BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045040
         (255 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
          Length = 599

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 150 YTDTKLCEGSLPKFYQGHKNTTVLNIPLTGQTENATALVNT-LQERQQRTGNVPLNLRVK 208
           Y DT+L   SL K  Q    TT  +    G  E    L N  + +   RTGN+P N++  
Sbjct: 292 YGDTELDVSSLEKHLQTMHGTTT-HFDKIGLEEEFRKLTNVRIMKENMRTGNLPANMKKA 350

Query: 209 QPVRI 213
           + ++I
Sbjct: 351 RVIQI 355


>pdb|1BKJ|A Chain A, Nadph:fmn Oxidoreductase From Vibrio Harveyi
 pdb|1BKJ|B Chain B, Nadph:fmn Oxidoreductase From Vibrio Harveyi
 pdb|2BKJ|A Chain A, Nadph:fmn Oxidoreductase From Vibrio Harveyi Complexed
           With Nad+
 pdb|2BKJ|B Chain B, Nadph:fmn Oxidoreductase From Vibrio Harveyi Complexed
           With Nad+
          Length = 240

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 95  KPKLP-KISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGIY 139
           KP+LP  + V   Q  +LNL D  S + T      +R  N+K+  +
Sbjct: 167 KPRLPAHVVVHENQYQELNLDDIQSYDQTMQAYYASRTSNQKLSTW 212


>pdb|1QFJ|A Chain A, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
           Escherichia Coli
 pdb|1QFJ|B Chain B, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
           Escherichia Coli
 pdb|1QFJ|C Chain C, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
           Escherichia Coli
 pdb|1QFJ|D Chain D, Crystal Structure Of Nad(p)h:flavin Oxidoreductase From
           Escherichia Coli
          Length = 232

 Score = 28.1 bits (61), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 125 VTITARNPNEKIGIYYEGGSRINVYYTDTKLCE-GSLPKFYQGHKNTTVLNIPLTG-QTE 182
           +T  ARNPN  I IY+ G    ++Y     LCE  +L   + G +   V+  P  G +  
Sbjct: 122 LTALARNPNRDITIYWGGREEQHLY----DLCELEALSLKHPGLQVVPVVEQPEAGWRGR 177

Query: 183 NATALVNTLQE 193
             T L   LQ+
Sbjct: 178 TGTVLTAVLQD 188


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,069,691
Number of Sequences: 62578
Number of extensions: 263831
Number of successful extensions: 436
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 5
length of query: 255
length of database: 14,973,337
effective HSP length: 97
effective length of query: 158
effective length of database: 8,903,271
effective search space: 1406716818
effective search space used: 1406716818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)