BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045040
(255 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
Length = 416
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 100 KISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEGS 159
K V +++ +L N++L+ + ++ ++ RN IGI+Y+ VYY + +L
Sbjct: 8 KFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDR-FEATVYYMNQRLGAVP 66
Query: 160 LPKFYQGHKNTTVLNIPLTGQT 181
+P FY G KNT +L GQT
Sbjct: 67 MPLFYLGSKNTMLLRALFEGQT 88
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 62 RSCLCKCMCWTISLLLILIIIIAATVGILWLAFKPKLPKISVDRMQVSQLNLSDNSSLEA 121
R+C C C L I T LWL+ + PK S+ + L NS
Sbjct: 12 RNC---CTC-----CLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNT 63
Query: 122 TFNVTITARNPNEKIGIYYE----GGSRINVYYTDTK----LCEGSLPKFYQGHK 168
T N + NPN+ GIYY+ S IN ++ + ++PKFYQGHK
Sbjct: 64 TLNFMVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHK 118
>sp|P47300|Y054_MYCGE Uncharacterized protein MG054 OS=Mycoplasma genitalium (strain ATCC
33530 / G-37 / NCTC 10195) GN=MG054 PE=3 SV=1
Length = 316
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 143 GSRINVYYTDTKLCEGSLPKFYQGHKNTTVLNIPLTGQTE 182
G+ + V+ TDT +G + YQG N V+ I LT +T+
Sbjct: 262 GNLVEVHLTDTIHVQGQIKALYQGTVNKAVVEIELTSKTQ 301
>sp|Q5NNW5|ADE_ZYMMO Adenine deaminase OS=Zymomonas mobilis subsp. mobilis (strain ATCC
31821 / ZM4 / CP4) GN=ZMO0971 PE=3 SV=1
Length = 337
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 115 DNSSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEGSLPKFYQGHKNTTV 172
D S++A +N N E + IYY+G NV T+ C+ ++ FY+ H++ +
Sbjct: 44 DVESVKAAYNFN----NLQEFLDIYYQG---TNVLKTEEDFCDLAMAYFYRAHRDNVL 94
>sp|Q9PB02|RECN_XYLFA DNA repair protein RecN OS=Xylella fastidiosa (strain 9a5c) GN=recN
PE=3 SV=1
Length = 557
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 155 LCEGSLPKFY-QGHKNTTVLNIPLTGQTENATALVNTLQERQQRTGNVPLNLRVKQPVRI 213
LC LP+ +GH + V IP+ G T++A L+++ QERQ+ + + + +
Sbjct: 487 LCVTHLPQVAAKGHTHYRVSKIPIDGITQSAICLLDS-QERQEEIARMLGGVHISKEAHA 545
Query: 214 KLGKL 218
GKL
Sbjct: 546 AAGKL 550
>sp|Q9EPT5|SO2A1_MOUSE Solute carrier organic anion transporter family member 2A1 OS=Mus
musculus GN=Slco2a1 PE=1 SV=2
Length = 643
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 37 PAAAERYPPFQRTIPVMHSKPPKRKRSCLC 66
PA AE YPP T +H +PP +R CLC
Sbjct: 422 PAVAEVYPP--STPSSIHPQPPACRRDCLC 449
>sp|Q875S9|AKR1_LACK1 Palmitoyltransferase AKR1 OS=Lachancea kluyveri (strain ATCC 58438
/ CBS 3082 / CCRC 21498 / NBRC 1685 / JCM 7257 / NCYC
543 / NRRL Y-12651) GN=AKR1 PE=3 SV=1
Length = 737
Score = 30.8 bits (68), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 41 ERYPPFQRTIPVMHSKPPKRKRSCLCKCMCWTISLLLILIIIIAATVGI 89
E P IP + + P ++S C +CWT++ L +++I T G+
Sbjct: 612 EEADPLNPVIPGNNPRDPLMQKSRTCFGICWTLTGLDQFVMVIKETFGV 660
>sp|Q59S59|MRH4_CANAL ATP-dependent RNA helicase MRH4, mitochondrial OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=MRH4 PE=3 SV=1
Length = 555
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 16/156 (10%)
Query: 80 IIIIAATVGI--LWLAFKPKLPKISVDRMQV--SQLNLSDNSSLEATFNVTITARNPNEK 135
+ +AA G W P L K+ D M+ S DN+ + F ++ NE
Sbjct: 152 VFTVAAETGSGKTWSYLAPLLSKLKSDDMEFWKSDPEGYDNTRKKGQFVKSVILLPTNEL 211
Query: 136 IGIYYEGGSRINVYYTDTKLCEGSLPKFYQGHKNTTVLNIPLT--GQTENATALVNTLQE 193
+ YE R N + + K G+ F + +N T +NI GQ E L L+
Sbjct: 212 VDQVYETLQRANSFELEHKGAPGNFTSFLELPENKT-MNITTMKLGQGEAPVRLFRQLET 270
Query: 194 RQQRTGNVPLNLRVKQPVRIKLGKLKLMKVN--FRV 227
+ P+++ + P +I + KL+ +N FRV
Sbjct: 271 KG------PIDVLITTPGKI-VAFSKLVNINRPFRV 299
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,734,039
Number of Sequences: 539616
Number of extensions: 3678964
Number of successful extensions: 9438
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9424
Number of HSP's gapped (non-prelim): 22
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)