Query 045040
Match_columns 255
No_of_seqs 174 out of 839
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:17:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 3.6E-40 7.8E-45 286.7 27.5 182 62-255 33-219 (219)
2 PF03168 LEA_2: Late embryogen 99.4 3.8E-12 8.3E-17 96.3 11.1 97 126-230 1-100 (101)
3 smart00769 WHy Water Stress an 98.6 1.1E-06 2.3E-11 67.3 11.9 85 117-208 11-97 (100)
4 PF12751 Vac7: Vacuolar segreg 98.2 2.2E-05 4.7E-10 73.0 12.5 89 59-156 293-381 (387)
5 PF07092 DUF1356: Protein of u 97.8 0.00054 1.2E-08 60.2 13.7 83 96-180 98-182 (238)
6 COG5608 LEA14-like dessication 97.3 0.016 3.4E-07 47.6 14.6 92 97-199 31-123 (161)
7 PLN03160 uncharacterized prote 97.1 0.0045 9.8E-08 54.1 10.1 110 58-178 32-153 (219)
8 PF14155 DUF4307: Domain of un 86.0 12 0.00027 29.1 9.8 77 88-178 20-99 (112)
9 TIGR02588 conserved hypothetic 86.0 1.7 3.7E-05 34.5 4.8 50 79-135 12-63 (122)
10 TIGR03602 streptolysinS bacter 85.7 0.066 1.4E-06 35.5 -2.7 11 63-73 25-35 (56)
11 PF06072 Herpes_US9: Alphaherp 77.6 0.82 1.8E-05 31.6 0.3 23 69-91 36-58 (60)
12 PRK07021 fliL flagellar basal 70.6 20 0.00044 29.5 7.0 16 138-154 78-93 (162)
13 PRK05529 cell division protein 70.2 9.2 0.0002 34.1 5.2 53 98-151 58-137 (255)
14 COG1580 FliL Flagellar basal b 68.2 18 0.00039 30.1 6.1 26 69-94 17-42 (159)
15 COG4698 Uncharacterized protei 67.6 18 0.0004 30.7 6.0 31 85-115 25-58 (197)
16 PF03100 CcmE: CcmE; InterPro 66.9 6.9 0.00015 31.3 3.3 14 127-140 75-88 (131)
17 PHA02844 putative transmembran 65.5 5.4 0.00012 28.8 2.2 24 69-92 46-69 (75)
18 PF09911 DUF2140: Uncharacteri 63.3 11 0.00024 32.0 4.2 27 73-99 5-31 (187)
19 KOG3950 Gamma/delta sarcoglyca 62.8 19 0.00042 32.0 5.5 21 118-138 105-125 (292)
20 PRK13183 psbN photosystem II r 62.8 10 0.00022 24.9 2.9 23 74-96 10-32 (46)
21 PF12575 DUF3753: Protein of u 61.5 9.6 0.00021 27.5 2.8 24 69-92 46-69 (72)
22 PF12273 RCR: Chitin synthesis 60.9 4.3 9.3E-05 32.3 1.1 6 71-76 2-7 (130)
23 PF10177 DUF2371: Uncharacteri 60.9 20 0.00043 29.3 4.9 25 66-90 35-59 (141)
24 PHA02650 hypothetical protein; 60.8 6 0.00013 28.9 1.7 24 69-92 47-70 (81)
25 PHA03054 IMV membrane protein; 60.1 6.4 0.00014 28.2 1.7 24 69-92 46-69 (72)
26 PRK07718 fliL flagellar basal 59.9 21 0.00046 28.8 5.1 10 144-153 67-76 (142)
27 PHA02819 hypothetical protein; 59.9 6.6 0.00014 28.1 1.8 24 69-92 44-67 (71)
28 CHL00020 psbN photosystem II p 59.5 11 0.00025 24.3 2.6 23 74-96 7-29 (43)
29 PRK01844 hypothetical protein; 59.4 7.9 0.00017 27.9 2.1 21 70-90 3-23 (72)
30 PF05473 Herpes_UL45: UL45 pro 58.0 33 0.00072 29.5 6.2 7 70-76 54-60 (200)
31 PRK06975 bifunctional uroporph 57.5 31 0.00067 35.1 6.8 9 30-38 288-296 (656)
32 COG5294 Uncharacterized protei 57.3 53 0.0011 25.7 6.5 15 120-134 51-65 (113)
33 PF09624 DUF2393: Protein of u 55.6 45 0.00098 26.8 6.3 62 86-157 33-96 (149)
34 PF02468 PsbN: Photosystem II 55.5 9.6 0.00021 24.7 1.8 21 76-96 9-29 (43)
35 PF11906 DUF3426: Protein of u 55.2 50 0.0011 26.3 6.5 57 102-160 49-106 (149)
36 PHA02975 hypothetical protein; 53.2 9.7 0.00021 27.1 1.7 25 68-92 41-65 (69)
37 PF09307 MHC2-interact: CLIP, 53.1 4.5 9.7E-05 31.8 0.0 34 62-96 25-58 (114)
38 COG3763 Uncharacterized protei 52.0 14 0.00031 26.5 2.4 19 71-89 4-22 (71)
39 PRK13150 cytochrome c-type bio 51.6 35 0.00077 28.4 5.1 37 123-160 78-115 (159)
40 PRK10893 lipopolysaccharide ex 50.6 1.3E+02 0.0027 25.7 8.5 21 95-115 37-57 (192)
41 PRK00523 hypothetical protein; 50.4 15 0.00033 26.4 2.4 20 71-90 5-24 (72)
42 COG5353 Uncharacterized protei 49.1 8.6 0.00019 31.6 1.0 30 68-97 5-34 (161)
43 COG5009 MrcA Membrane carboxyp 49.0 8.4 0.00018 39.5 1.2 36 67-102 3-38 (797)
44 PF05478 Prominin: Prominin; 46.7 19 0.0004 37.5 3.3 27 62-88 134-160 (806)
45 KOG4331 Polytopic membrane pro 46.3 13 0.00028 38.5 2.0 13 80-92 161-173 (865)
46 PF12273 RCR: Chitin synthesis 45.2 18 0.00039 28.7 2.3 10 70-79 4-13 (130)
47 PF14283 DUF4366: Domain of un 44.8 20 0.00043 31.4 2.7 20 82-101 171-190 (218)
48 KOG0810 SNARE protein Syntaxin 44.1 9 0.0002 35.1 0.5 7 65-71 272-278 (297)
49 PRK06531 yajC preprotein trans 42.6 13 0.00028 29.2 1.1 12 87-98 13-24 (113)
50 PF00927 Transglut_C: Transglu 42.1 44 0.00096 25.1 4.1 59 116-177 10-74 (107)
51 PHA02692 hypothetical protein; 41.5 17 0.00037 26.0 1.5 9 69-77 43-51 (70)
52 PF12505 DUF3712: Protein of u 40.9 1.7E+02 0.0037 22.7 9.2 67 154-225 2-69 (125)
53 PF14927 Neurensin: Neurensin 40.8 81 0.0018 25.7 5.5 8 82-89 56-63 (140)
54 PF10907 DUF2749: Protein of u 40.7 34 0.00074 24.1 2.9 16 82-97 13-28 (66)
55 cd07912 Tweety_N N-terminal do 40.5 19 0.00041 34.6 2.1 29 63-91 64-101 (418)
56 PTZ00116 signal peptidase; Pro 40.4 1.5E+02 0.0031 25.4 7.2 52 96-152 36-93 (185)
57 PF15145 DUF4577: Domain of un 40.2 26 0.00056 27.5 2.4 25 72-96 64-88 (128)
58 PF07787 DUF1625: Protein of u 39.1 31 0.00067 30.4 3.1 12 85-96 237-248 (248)
59 PF05478 Prominin: Prominin; 38.1 18 0.00039 37.5 1.7 19 72-91 141-159 (806)
60 PF05545 FixQ: Cbb3-type cytoc 37.4 16 0.00035 23.9 0.8 17 82-98 18-34 (49)
61 cd01324 cbb3_Oxidase_CcoQ Cyto 37.1 18 0.0004 23.8 1.0 16 83-98 20-35 (48)
62 PF09604 Potass_KdpF: F subuni 36.6 14 0.0003 21.1 0.3 19 80-98 6-24 (25)
63 PF11770 GAPT: GRB2-binding ad 36.6 43 0.00093 27.6 3.3 18 79-96 19-36 (158)
64 PRK08455 fliL flagellar basal 36.6 38 0.00082 28.7 3.1 15 139-154 103-117 (182)
65 PHA03049 IMV membrane protein; 36.6 15 0.00032 26.0 0.5 20 76-95 5-24 (68)
66 PF11395 DUF2873: Protein of u 36.3 18 0.00038 22.7 0.8 10 85-94 23-32 (43)
67 PRK13159 cytochrome c-type bio 35.9 1.1E+02 0.0024 25.4 5.6 14 181-194 126-139 (155)
68 PF08113 CoxIIa: Cytochrome c 35.8 24 0.00052 21.6 1.2 13 80-92 12-24 (34)
69 PF04573 SPC22: Signal peptida 35.8 2.7E+02 0.0058 23.4 8.3 30 118-152 65-95 (175)
70 PF05961 Chordopox_A13L: Chord 35.3 15 0.00033 26.1 0.4 21 76-96 5-25 (68)
71 PF10694 DUF2500: Protein of u 35.1 2E+02 0.0044 21.9 7.1 37 97-133 31-76 (110)
72 PF04790 Sarcoglycan_1: Sarcog 34.3 3.5E+02 0.0075 24.3 11.5 18 118-135 83-100 (264)
73 PF12505 DUF3712: Protein of u 34.1 82 0.0018 24.5 4.5 26 120-147 99-124 (125)
74 PF06092 DUF943: Enterobacteri 34.1 25 0.00055 29.2 1.6 15 82-96 14-28 (157)
75 PRK12785 fliL flagellar basal 33.9 1.2E+02 0.0027 25.0 5.8 15 139-154 87-101 (166)
76 PF06024 DUF912: Nucleopolyhed 33.9 53 0.0012 25.0 3.3 10 85-94 77-86 (101)
77 PF07423 DUF1510: Protein of u 33.7 23 0.00051 30.9 1.4 7 189-195 153-159 (217)
78 KOG1785 Tyrosine kinase negati 33.4 44 0.00094 32.0 3.2 11 45-55 537-547 (563)
79 KOG3927 Na+/K+ ATPase, beta su 33.1 42 0.00091 30.8 3.0 35 80-115 56-93 (300)
80 PF04478 Mid2: Mid2 like cell 32.5 36 0.00078 28.1 2.3 18 82-99 63-80 (154)
81 PRK14759 potassium-transportin 31.9 24 0.00052 20.9 0.8 20 79-98 9-28 (29)
82 PF02009 Rifin_STEVOR: Rifin/s 31.8 18 0.00039 33.2 0.4 22 74-95 259-280 (299)
83 PF09865 DUF2092: Predicted pe 31.2 3.5E+02 0.0076 23.4 9.0 40 116-156 34-74 (214)
84 PF14992 TMCO5: TMCO5 family 31.1 25 0.00055 31.9 1.2 23 62-84 211-233 (280)
85 PF15012 DUF4519: Domain of un 31.0 54 0.0012 22.5 2.5 13 85-97 44-56 (56)
86 COG2332 CcmE Cytochrome c-type 30.6 1.1E+02 0.0024 25.3 4.7 35 125-160 74-109 (153)
87 PF01690 PLRV_ORF5: Potato lea 30.1 3.5E+02 0.0075 26.5 8.7 60 95-154 47-111 (465)
88 PF14221 DUF4330: Domain of un 29.9 3.2E+02 0.007 22.6 11.0 18 78-95 21-38 (168)
89 PF09753 Use1: Membrane fusion 29.7 54 0.0012 28.9 3.1 8 68-75 228-235 (251)
90 COG5074 t-SNARE complex subuni 29.4 36 0.00077 30.3 1.8 7 69-75 252-258 (280)
91 PRK13254 cytochrome c-type bio 29.1 2.8E+02 0.006 22.7 7.0 16 125-140 73-88 (148)
92 COG5612 Predicted integral mem 28.9 39 0.00083 27.2 1.8 22 71-92 6-29 (148)
93 PF11322 DUF3124: Protein of u 28.6 3.1E+02 0.0066 21.9 6.9 53 117-174 19-74 (125)
94 PF01102 Glycophorin_A: Glycop 28.5 21 0.00046 28.3 0.3 23 83-105 78-101 (122)
95 KOG4298 CAP-binding protein co 28.5 84 0.0018 27.1 3.9 31 69-99 148-179 (245)
96 PF13396 PLDc_N: Phospholipase 28.2 68 0.0015 20.3 2.6 24 69-97 23-46 (46)
97 PF09788 Tmemb_55A: Transmembr 27.9 59 0.0013 29.1 2.9 22 67-88 197-218 (256)
98 KOG2302 T-type voltage-gated C 27.8 1E+02 0.0022 33.3 4.9 36 57-96 64-101 (1956)
99 TIGR02115 potass_kdpF K+-trans 27.4 16 0.00035 21.1 -0.4 18 81-98 6-23 (26)
100 PRK14762 membrane protein; Pro 26.8 1E+02 0.0022 17.6 2.7 7 68-74 3-9 (27)
101 COG1589 FtsQ Cell division sep 26.6 72 0.0016 28.4 3.4 66 84-150 43-135 (269)
102 PF15482 CCER1: Coiled-coil do 26.6 19 0.00041 30.5 -0.4 8 64-71 113-120 (214)
103 COG4736 CcoQ Cbb3-type cytochr 26.6 31 0.00068 24.0 0.8 11 87-97 23-33 (60)
104 PF03929 PepSY_TM: PepSY-assoc 26.0 85 0.0018 18.1 2.4 20 71-90 7-26 (27)
105 PHA03292 envelope glycoprotein 25.9 1.3E+02 0.0027 28.7 4.9 7 21-27 286-292 (413)
106 PF09125 COX2-transmemb: Cytoc 25.8 1.1E+02 0.0025 19.1 3.1 11 70-80 15-25 (38)
107 PF06692 MNSV_P7B: Melon necro 25.5 26 0.00055 24.0 0.2 9 93-101 31-39 (61)
108 KOG0810 SNARE protein Syntaxin 23.7 31 0.00068 31.6 0.5 19 62-80 266-284 (297)
109 PF06919 Phage_T4_Gp30_7: Phag 23.1 1.3E+02 0.0027 23.4 3.6 34 131-165 40-73 (121)
110 COG4968 PilE Tfp pilus assembl 22.7 56 0.0012 26.6 1.7 22 70-91 7-28 (139)
111 PRK15136 multidrug efflux syst 22.3 1.1E+02 0.0023 28.9 3.8 6 71-76 23-28 (390)
112 PF14283 DUF4366: Domain of un 22.3 88 0.0019 27.3 3.0 27 78-104 164-190 (218)
113 KOG4684 Uncharacterized conser 21.5 1E+02 0.0022 27.1 3.1 23 66-88 208-230 (275)
114 PF11606 AlcCBM31: Family 31 c 21.1 87 0.0019 23.3 2.3 24 130-153 4-27 (93)
115 KOG2927 Membrane component of 20.9 47 0.001 31.2 1.0 42 54-95 208-251 (372)
116 PTZ00201 amastin surface glyco 20.5 95 0.0021 26.6 2.7 25 64-91 100-124 (192)
117 TIGR01477 RIFIN variant surfac 20.4 41 0.00088 31.6 0.5 23 73-95 312-334 (353)
118 PF12321 DUF3634: Protein of u 20.3 42 0.00092 26.1 0.5 7 88-94 11-17 (108)
119 KOG1923 Rac1 GTPase effector F 20.1 1.3E+02 0.0028 31.2 4.0 35 17-58 281-315 (830)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=3.6e-40 Score=286.74 Aligned_cols=182 Identities=23% Similarity=0.338 Sum_probs=154.7
Q ss_pred CCceehhhHHHHHHHHHHHHHHHHHhheeeeEeecCCCEEEEEEEEEeeeecCC----CCeeeEEEEEEEEEecCCCeeE
Q 045040 62 RSCLCKCMCWTISLLLILIIIIAATVGILWLAFKPKLPKISVDRMQVSQLNLSD----NSSLEATFNVTITARNPNEKIG 137 (255)
Q Consensus 62 r~~ccr~~c~~~~~ll~lvlllgi~~~ilylv~rPk~P~~~V~s~~v~~f~~~~----~~~L~~~~~v~l~~~NPN~k~g 137 (255)
|++||||++|+++++++ ++++++.++|++||||.|+|+|+++++++|+++. +..+|++++++++++|||. ++
T Consensus 33 r~~~~~c~~~~~a~~l~---l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~ 108 (219)
T PLN03160 33 RRNCIKCCGCITATLLI---LATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-AS 108 (219)
T ss_pred cccceEEHHHHHHHHHH---HHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-ee
Confidence 33555555555544433 3566677789999999999999999999999865 3468888999999999998 89
Q ss_pred EEEecCeEEEEEECCeEeeccCCCceeecCCCeEEEEEEEEEe-eccchHHHHHHHHHhhcCCcEeEEEEEEEEEEEEEc
Q 045040 138 IYYEGGSRINVYYTDTKLCEGSLPKFYQGHKNTTVLNIPLTGQ-TENATALVNTLQERQQRTGNVPLNLRVKQPVRIKLG 216 (255)
Q Consensus 138 i~Y~~~~~v~v~Y~g~~Lg~~~lp~F~Q~~~ntt~v~v~l~g~-~~l~~~~~~~L~~d~~~~G~v~l~v~v~~~vr~kvg 216 (255)
|+| ++++++++|+|+.+|++.+|+|+|++++++.+++++.+. ..+.+ ..+|.+|+ ++|.++|++++++++|+++|
T Consensus 109 ~~Y-~~~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~--~~~L~~D~-~~G~v~l~~~~~v~gkVkv~ 184 (219)
T PLN03160 109 FKY-SNTTTTIYYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS--VPGLLTDI-SSGLLNMNSYTRIGGKVKIL 184 (219)
T ss_pred EEE-cCeEEEEEECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc--chhHHHHh-hCCeEEEEEEEEEEEEEEEE
Confidence 999 999999999999999999999999999999999998766 33333 25699999 89999999999999999999
Q ss_pred EEEeeeeEEEEEeEEEEecCCCCCceeeecCCeeEeeeC
Q 045040 217 KLKLMKVNFRVRCRLVVNSLNPDNSIRIQDSSCKFRFRL 255 (255)
Q Consensus 217 ~~~~~~~~~~v~C~l~v~~~~~~~~~~i~~~~C~~~~~l 255 (255)
++++++++++++|++.++.. ...|++++|+++++|
T Consensus 185 ~i~k~~v~~~v~C~v~V~~~----~~~i~~~~C~~~~~~ 219 (219)
T PLN03160 185 KIIKKHVVVKMNCTMTVNIT----SQAIQGQKCKRHVDL 219 (219)
T ss_pred EEEEEEEEEEEEeEEEEECC----CCEEeccEecccccC
Confidence 99999999999999999864 347889999999886
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.40 E-value=3.8e-12 Score=96.30 Aligned_cols=97 Identities=28% Similarity=0.532 Sum_probs=71.7
Q ss_pred EEEEecCCCeeEEEEecCeEEEEEECCeEee-ccCCCceeecCCCeEEEEEEEEEe-eccchHHHHHHHHHhhcCCcEeE
Q 045040 126 TITARNPNEKIGIYYEGGSRINVYYTDTKLC-EGSLPKFYQGHKNTTVLNIPLTGQ-TENATALVNTLQERQQRTGNVPL 203 (255)
Q Consensus 126 ~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg-~~~lp~F~Q~~~ntt~v~v~l~g~-~~l~~~~~~~L~~d~~~~G~v~l 203 (255)
+|+++|||. ++++| +++++.++|+|..+| .+..++|+|++++++.+.+.+..+ ..+ .+.+.++. +|..++
T Consensus 1 ~l~v~NPN~-~~i~~-~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~--~~~~~~ 72 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRY-DSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL--AGRVPF 72 (101)
T ss_dssp EEEEEESSS-S-EEE-EEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH--HTTSCE
T ss_pred CEEEECCCc-eeEEE-eCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh--ccccce
Confidence 589999999 99999 999999999999999 778999999999999999887776 333 34444443 457788
Q ss_pred EEEEEEEEEEEE-cEEEeeeeEEEEEeE
Q 045040 204 NLRVKQPVRIKL-GKLKLMKVNFRVRCR 230 (255)
Q Consensus 204 ~v~v~~~vr~kv-g~~~~~~~~~~v~C~ 230 (255)
++.+++++++++ +.....+.++.++|+
T Consensus 73 ~v~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 73 DVTYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEEEcccceeeeEEEeEEeE
Confidence 888888888884 333223445555553
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.60 E-value=1.1e-06 Score=67.29 Aligned_cols=85 Identities=27% Similarity=0.388 Sum_probs=66.7
Q ss_pred CeeeEEEEEEEEEecCCCeeEEEEecCeEEEEEECCeEeeccCCC-ceeecCCCeEEEEEEEEEeeccchHHHHHHHHHh
Q 045040 117 SSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEGSLP-KFYQGHKNTTVLNIPLTGQTENATALVNTLQERQ 195 (255)
Q Consensus 117 ~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~~lp-~F~Q~~~ntt~v~v~l~g~~~l~~~~~~~L~~d~ 195 (255)
..++.++.+++.+.|||. +.+.| ++++..++|+|..+|++..+ .+..++++++.+.+.++.... ....+..++
T Consensus 11 ~~~~~~~~l~l~v~NPN~-~~l~~-~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~~----~~~~~~~~l 84 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNP-FPIPV-NGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNLF----LAEALIWHI 84 (100)
T ss_pred cceEEEEEEEEEEECCCC-Ccccc-ccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeehh----HhHHHHHhh
Confidence 457899999999999998 89999 99999999999999999986 689999999999888887522 234455555
Q ss_pred hcCC-cEeEEEEEE
Q 045040 196 QRTG-NVPLNLRVK 208 (255)
Q Consensus 196 ~~~G-~v~l~v~v~ 208 (255)
.+| .++++++.+
T Consensus 85 -~~~~~~~y~l~g~ 97 (100)
T smart00769 85 -ANGEEIPYRLDGK 97 (100)
T ss_pred -ccCCCccEEEEEE
Confidence 333 455555444
No 4
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=98.21 E-value=2.2e-05 Score=73.02 Aligned_cols=89 Identities=20% Similarity=0.257 Sum_probs=58.1
Q ss_pred CCCCCceehhhHHHHHHHHHHHHHHHHHhheeeeEeecCCCEEEEEEEEEeeeecCCCCeeeEEEEEEEEEecCCCeeEE
Q 045040 59 KRKRSCLCKCMCWTISLLLILIIIIAATVGILWLAFKPKLPKISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGI 138 (255)
Q Consensus 59 k~rr~~ccr~~c~~~~~ll~lvlllgi~~~ilylv~rPk~P~~~V~s~~v~~f~~~~~~~L~~~~~v~l~~~NPN~k~gi 138 (255)
+++|+||.|..+|+++.+++|+++.|++.+++. .-+| --.|+-+.+++.-.+ .-..-|++++.+.|||. +.|
T Consensus 293 ~r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~A-ttKp---L~~v~v~~I~NVlaS---~qELmfdl~V~A~NPn~-~~V 364 (387)
T PF12751_consen 293 YRQRSWFSRFASCIYLSILLLLVIGFAIGFVFA-TTKP---LTDVQVVSIQNVLAS---EQELMFDLTVEAFNPNW-FTV 364 (387)
T ss_pred hccccHHhhhhHHHHHHHHHHHHHHHHHHhhhh-cCcc---cccceEEEeeeeeec---cceEEEeeEEEEECCCe-EEE
Confidence 345778888888877666655555445544433 3344 333333344443222 23578999999999997 899
Q ss_pred EEecCeEEEEEECCeEee
Q 045040 139 YYEGGSRINVYYTDTKLC 156 (255)
Q Consensus 139 ~Y~~~~~v~v~Y~g~~Lg 156 (255)
.. +..++.||-+-..+|
T Consensus 365 ~I-~d~dldIFAKS~yvg 381 (387)
T PF12751_consen 365 TI-DDMDLDIFAKSRYVG 381 (387)
T ss_pred Ee-ccceeeeEecCCccC
Confidence 99 999999986655554
No 5
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.85 E-value=0.00054 Score=60.19 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=61.4
Q ss_pred cCCCEEEEEEEEEeeeecCC-CCeeeEEEEEEEEEecCCCeeEEEEecCeEEEEEECCeEeeccCCCce-eecCCCeEEE
Q 045040 96 PKLPKISVDRMQVSQLNLSD-NSSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEGSLPKF-YQGHKNTTVL 173 (255)
Q Consensus 96 Pk~P~~~V~s~~v~~f~~~~-~~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~~lp~F-~Q~~~ntt~v 173 (255)
|+.-.++-.++......++. +..+..++.-.|.++|+|. ..+.- .++++++.|..+.+|.+..... ..++++.+.+
T Consensus 98 PRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~V-t~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~ 175 (238)
T PF07092_consen 98 PRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTV-TNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQV 175 (238)
T ss_pred CcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEE-EeEEEEEEEEEeEEeeeEecceEEecccCCceE
Confidence 76555554444444333333 3568888999999999997 89999 8899999999999999876543 6677877777
Q ss_pred EEEEEEe
Q 045040 174 NIPLTGQ 180 (255)
Q Consensus 174 ~v~l~g~ 180 (255)
...+...
T Consensus 176 ~~tV~t~ 182 (238)
T PF07092_consen 176 NYTVKTT 182 (238)
T ss_pred EEEeeEE
Confidence 7766655
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.34 E-value=0.016 Score=47.60 Aligned_cols=92 Identities=20% Similarity=0.256 Sum_probs=67.8
Q ss_pred CCCEEEEEEEEEeeeecCCCCeeeEEEEEEEEEecCCCeeEEEEecCeEEEEEECCeEeeccCC-CceeecCCCeEEEEE
Q 045040 97 KLPKISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEGSL-PKFYQGHKNTTVLNI 175 (255)
Q Consensus 97 k~P~~~V~s~~v~~f~~~~~~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~~l-p~F~Q~~~ntt~v~v 175 (255)
+.|...--.+..-.... ....+-.++.++|||. +.+-. .+++..++-+|.++|+|.. .++..++++...+.+
T Consensus 31 ~~p~ve~~ka~wGkvt~-----s~~EiV~t~KiyNPN~-fPipV-tgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv 103 (161)
T COG5608 31 KKPGVESMKAKWGKVTN-----SETEIVGTLKIYNPNP-FPIPV-TGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDV 103 (161)
T ss_pred CCCCceEEEEEEEEEec-----cceEEEEEEEecCCCC-cceee-eceEEEEEEcceEeeccccccceEECCCCeEEEEE
Confidence 45655555555444332 4578999999999998 89999 9999999999999999975 569999999999999
Q ss_pred EEEEeeccchHHHHHHHHHhhcCC
Q 045040 176 PLTGQTENATALVNTLQERQQRTG 199 (255)
Q Consensus 176 ~l~g~~~l~~~~~~~L~~d~~~~G 199 (255)
.+..+. +...+.+...+ .+|
T Consensus 104 ~l~~d~---~~~ke~w~~hi-~ng 123 (161)
T COG5608 104 PLRLDN---SKIKEWWVTHI-ENG 123 (161)
T ss_pred EEEEeh---HHHHHHHHHHh-hcc
Confidence 988872 11223455555 444
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=97.12 E-value=0.0045 Score=54.06 Aligned_cols=110 Identities=23% Similarity=0.364 Sum_probs=62.2
Q ss_pred CCCCCCceehhhHHHHHHHHHHHHHHHHHhheeeeEeec--CCCEEEEEEEEEee---eecCCCCee-------eEEEEE
Q 045040 58 PKRKRSCLCKCMCWTISLLLILIIIIAATVGILWLAFKP--KLPKISVDRMQVSQ---LNLSDNSSL-------EATFNV 125 (255)
Q Consensus 58 ~k~rr~~ccr~~c~~~~~ll~lvlllgi~~~ilylv~rP--k~P~~~V~s~~v~~---f~~~~~~~L-------~~~~~v 125 (255)
++|++.+||+|+|.+++++.++++++ ++.+|-.=+| +.-.++++++.++. .+..-+.+| |.|. +
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l---~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~ 107 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVL---VFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-A 107 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHhe---eeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-e
Confidence 45667788888887777766654332 3344444555 33566666666532 111111122 3444 3
Q ss_pred EEEEecCCCeeEEEEecCeEEEEEECCeEeeccCCCceeecCCCeEEEEEEEE
Q 045040 126 TITARNPNEKIGIYYEGGSRINVYYTDTKLCEGSLPKFYQGHKNTTVLNIPLT 178 (255)
Q Consensus 126 ~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~~lp~F~Q~~~ntt~v~v~l~ 178 (255)
.+.-. |....++| ++..+ +...+..+..+++.+...+.+..-...+
T Consensus 108 ~~~Y~--~~~~~v~Y-~g~~v----G~a~~p~g~~~ar~T~~l~~tv~~~~~~ 153 (219)
T PLN03160 108 SFKYS--NTTTTIYY-GGTVV----GEARTPPGKAKARRTMRMNVTVDIIPDK 153 (219)
T ss_pred eEEEc--CeEEEEEE-CCEEE----EEEEcCCcccCCCCeEEEEEEEEEEece
Confidence 44443 34478999 76444 3346777788888887777775433333
No 8
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=85.99 E-value=12 Score=29.07 Aligned_cols=77 Identities=18% Similarity=0.391 Sum_probs=36.8
Q ss_pred heeeeEee-cCCCEEEEEEEEEeeeecCCCCeeeEEEEEEEEEecCCCeeEEEEecCeEEEEEECCeEeecc--CCCcee
Q 045040 88 GILWLAFK-PKLPKISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEG--SLPKFY 164 (255)
Q Consensus 88 ~ilylv~r-Pk~P~~~V~s~~v~~f~~~~~~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~--~lp~F~ 164 (255)
++.|+.++ -..+.+ +....+|++.++.++..+|+++- +|.... ..- + -...|.+..+|.- .+|+
T Consensus 20 ~~~w~~~~~~~~~~v---~~~~~gf~vv~d~~v~v~f~Vtr---~~~~~a-~C~---V-rA~~~d~aeVGrreV~vp~-- 86 (112)
T PF14155_consen 20 VVAWFGYSQFGSPPV---SAEVIGFEVVDDSTVEVTFDVTR---DPGRPA-VCI---V-RALDYDGAEVGRREVLVPP-- 86 (112)
T ss_pred HHhHhhhhhccCCCc---eEEEEEEEECCCCEEEEEEEEEE---CCCCCE-EEE---E-EEEeCCCCEEEEEEEEECC--
Confidence 33354443 344554 34455566665655555554442 255422 222 1 2245777788854 4565
Q ss_pred ecCCCeEEEEEEEE
Q 045040 165 QGHKNTTVLNIPLT 178 (255)
Q Consensus 165 Q~~~ntt~v~v~l~ 178 (255)
+...+..+.+.+.
T Consensus 87 -~~~~~~~~~v~v~ 99 (112)
T PF14155_consen 87 -SGERTVRVTVTVR 99 (112)
T ss_pred -CCCcEEEEEEEEE
Confidence 2333444444443
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=85.97 E-value=1.7 Score=34.54 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=33.1
Q ss_pred HHHHHHHHhheeeeEe--ecCCCEEEEEEEEEeeeecCCCCeeeEEEEEEEEEecCCCe
Q 045040 79 LIIIIAATVGILWLAF--KPKLPKISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEK 135 (255)
Q Consensus 79 lvlllgi~~~ilylv~--rPk~P~~~V~s~~v~~f~~~~~~~L~~~~~v~l~~~NPN~k 135 (255)
++++++++.+++|.++ +.+.|.+.+......+- ....+-+-++++|-..+
T Consensus 12 ~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~-------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 12 TLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM-------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE-------eCCEEEEEEEEEeCCCc
Confidence 3445566677776544 66889998888776542 23446677788887754
No 10
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=85.66 E-value=0.066 Score=35.47 Aligned_cols=11 Identities=36% Similarity=1.231 Sum_probs=6.8
Q ss_pred CceehhhHHHH
Q 045040 63 SCLCKCMCWTI 73 (255)
Q Consensus 63 ~~ccr~~c~~~ 73 (255)
+|||||.||.+
T Consensus 25 gcccccc~cc~ 35 (56)
T TIGR03602 25 GCCCCCCCCCF 35 (56)
T ss_pred CeEEEeccEEE
Confidence 57776665544
No 11
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=77.63 E-value=0.82 Score=31.58 Aligned_cols=23 Identities=4% Similarity=0.229 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHHHHHhheee
Q 045040 69 MCWTISLLLILIIIIAATVGILW 91 (255)
Q Consensus 69 ~c~~~~~ll~lvlllgi~~~ily 91 (255)
...++.++++-++..++-+++.|
T Consensus 36 v~~v~~~~~~c~~S~~lG~~~~~ 58 (60)
T PF06072_consen 36 VAIVFAVVALCVLSGGLGALVAW 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333333333333344444
No 12
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=70.61 E-value=20 Score=29.55 Aligned_cols=16 Identities=6% Similarity=-0.195 Sum_probs=8.1
Q ss_pred EEEecCeEEEEEECCeE
Q 045040 138 IYYEGGSRINVYYTDTK 154 (255)
Q Consensus 138 i~Y~~~~~v~v~Y~g~~ 154 (255)
-+| =...+++.+.+..
T Consensus 78 ~ry-lkv~i~L~~~~~~ 93 (162)
T PRK07021 78 DRV-LYVGLTLRLPDEA 93 (162)
T ss_pred ceE-EEEEEEEEECCHH
Confidence 455 3355555555543
No 13
>PRK05529 cell division protein FtsQ; Provisional
Probab=70.17 E-value=9.2 Score=34.06 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=32.5
Q ss_pred CCEEEEEEEEEeeeecCC-------------CC--------------eeeEEEEEEEEEecCCCeeEEEEecCeEEEEEE
Q 045040 98 LPKISVDRMQVSQLNLSD-------------NS--------------SLEATFNVTITARNPNEKIGIYYEGGSRINVYY 150 (255)
Q Consensus 98 ~P~~~V~s~~v~~f~~~~-------------~~--------------~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y 150 (255)
.|.|.|+++.|++-..-+ .+ .+-.-=+++++-+.||. +.|...+.--+..+.
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~Er~pvA~~~ 136 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVERVPLAFIQ 136 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEEeeeEEEEE
Confidence 589999999998744211 00 11222356788889996 777774555555554
Q ss_pred C
Q 045040 151 T 151 (255)
Q Consensus 151 ~ 151 (255)
.
T Consensus 137 ~ 137 (255)
T PRK05529 137 R 137 (255)
T ss_pred E
Confidence 3
No 14
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=68.16 E-value=18 Score=30.07 Aligned_cols=26 Identities=19% Similarity=0.597 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHhheeeeEe
Q 045040 69 MCWTISLLLILIIIIAATVGILWLAF 94 (255)
Q Consensus 69 ~c~~~~~ll~lvlllgi~~~ilylv~ 94 (255)
..|+++++++.++++|+.+.++|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 56777777777777777777777765
No 15
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.64 E-value=18 Score=30.71 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=19.3
Q ss_pred HHhheeeeEeecCCCEEEEEEEEE---eeeecCC
Q 045040 85 ATVGILWLAFKPKLPKISVDRMQV---SQLNLSD 115 (255)
Q Consensus 85 i~~~ilylv~rPk~P~~~V~s~~v---~~f~~~~ 115 (255)
++++++-+++.|+.+..++...+= ..|.++.
T Consensus 25 ~~~~i~~~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 25 LAVLIALFVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred HHHHhheeeccCCCCCchhhccCcccceeEEEEc
Confidence 335555678899997777666554 2355543
No 16
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=66.95 E-value=6.9 Score=31.25 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=5.7
Q ss_pred EEEecCCCeeEEEE
Q 045040 127 ITARNPNEKIGIYY 140 (255)
Q Consensus 127 l~~~NPN~k~gi~Y 140 (255)
+.+...++.+.+.|
T Consensus 75 F~i~D~~~~i~V~Y 88 (131)
T PF03100_consen 75 FTITDGGKEIPVVY 88 (131)
T ss_dssp EEEE-SS-EEEEEE
T ss_pred EEEEECCcEEEEEE
Confidence 33344455455555
No 17
>PHA02844 putative transmembrane protein; Provisional
Probab=65.52 E-value=5.4 Score=28.83 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHhheeee
Q 045040 69 MCWTISLLLILIIIIAATVGILWL 92 (255)
Q Consensus 69 ~c~~~~~ll~lvlllgi~~~ilyl 92 (255)
..|.+.++++++++++++..++||
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443444444455555565
No 18
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=63.28 E-value=11 Score=32.00 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhheeeeEeecCCC
Q 045040 73 ISLLLILIIIIAATVGILWLAFKPKLP 99 (255)
Q Consensus 73 ~~~ll~lvlllgi~~~ilylv~rPk~P 99 (255)
+++++++.+++++++++++.+++|..+
T Consensus 5 ~aF~~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 5 WAFLILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHHHHHhheeeEEEccCCC
Confidence 334444555667777788889999866
No 19
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=62.82 E-value=19 Score=32.04 Aligned_cols=21 Identities=48% Similarity=0.600 Sum_probs=17.0
Q ss_pred eeeEEEEEEEEEecCCCeeEE
Q 045040 118 SLEATFNVTITARNPNEKIGI 138 (255)
Q Consensus 118 ~L~~~~~v~l~~~NPN~k~gi 138 (255)
++...=++++.++|||.++.=
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~ 125 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTG 125 (292)
T ss_pred EEEeccCeeEEccCCCCceee
Confidence 567777899999999987643
No 20
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=62.80 E-value=10 Score=24.87 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhheeeeEeec
Q 045040 74 SLLLILIIIIAATVGILWLAFKP 96 (255)
Q Consensus 74 ~~ll~lvlllgi~~~ilylv~rP 96 (255)
+.+.+..+++|+++..+|..|-|
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCC
Confidence 33445567889999999999977
No 21
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=61.50 E-value=9.6 Score=27.46 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHhheeee
Q 045040 69 MCWTISLLLILIIIIAATVGILWL 92 (255)
Q Consensus 69 ~c~~~~~ll~lvlllgi~~~ilyl 92 (255)
+.|.+.++.++++++.++..++||
T Consensus 46 ~~~~~~ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 46 FNWIILIISIIFVLIIVLLTFLYL 69 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHh
Confidence 444333333333333333334443
No 22
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=60.94 E-value=4.3 Score=32.27 Aligned_cols=6 Identities=17% Similarity=0.877 Sum_probs=2.5
Q ss_pred HHHHHH
Q 045040 71 WTISLL 76 (255)
Q Consensus 71 ~~~~~l 76 (255)
|+|+++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 444433
No 23
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=60.89 E-value=20 Score=29.28 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=13.6
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhhee
Q 045040 66 CKCMCWTISLLLILIIIIAATVGIL 90 (255)
Q Consensus 66 cr~~c~~~~~ll~lvlllgi~~~il 90 (255)
||...++++++-++++++|++..++
T Consensus 35 l~s~Sg~~l~lG~lvllvGiaMAv~ 59 (141)
T PF10177_consen 35 LCSPSGLFLLLGILVLLVGIAMAVL 59 (141)
T ss_pred EecHHHHHHHHHHHHHHHhhHhhee
Confidence 3334444555555666777765543
No 24
>PHA02650 hypothetical protein; Provisional
Probab=60.81 E-value=6 Score=28.94 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHhheeee
Q 045040 69 MCWTISLLLILIIIIAATVGILWL 92 (255)
Q Consensus 69 ~c~~~~~ll~lvlllgi~~~ilyl 92 (255)
..|.+.+++++++++.++..++||
T Consensus 47 ~~~~~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 47 FNGQNFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555544444455555555665
No 25
>PHA03054 IMV membrane protein; Provisional
Probab=60.10 E-value=6.4 Score=28.17 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHhheeee
Q 045040 69 MCWTISLLLILIIIIAATVGILWL 92 (255)
Q Consensus 69 ~c~~~~~ll~lvlllgi~~~ilyl 92 (255)
..|.+.++++++++++++..++||
T Consensus 46 ~~~~~~ii~l~~v~~~~l~~flYL 69 (72)
T PHA03054 46 WGWYWLIIIFFIVLILLLLIYLYL 69 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444444444444444444443
No 26
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=59.91 E-value=21 Score=28.81 Aligned_cols=10 Identities=0% Similarity=0.023 Sum_probs=5.2
Q ss_pred eEEEEEECCe
Q 045040 144 SRINVYYTDT 153 (255)
Q Consensus 144 ~~v~v~Y~g~ 153 (255)
.++++.+.+.
T Consensus 67 ~~i~l~~~~~ 76 (142)
T PRK07718 67 IQFKIETDSK 76 (142)
T ss_pred EEEEEEECCH
Confidence 4455555544
No 27
>PHA02819 hypothetical protein; Provisional
Probab=59.88 E-value=6.6 Score=28.07 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHhheeee
Q 045040 69 MCWTISLLLILIIIIAATVGILWL 92 (255)
Q Consensus 69 ~c~~~~~ll~lvlllgi~~~ilyl 92 (255)
..|.+.++++++++++++..++||
T Consensus 44 ~~~~~~ii~l~~~~~~~~~~flYL 67 (71)
T PHA02819 44 FLRYYLIIGLVTIVFVIIFIIFYL 67 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444444444444444444453
No 28
>CHL00020 psbN photosystem II protein N
Probab=59.49 E-value=11 Score=24.32 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhheeeeEeec
Q 045040 74 SLLLILIIIIAATVGILWLAFKP 96 (255)
Q Consensus 74 ~~ll~lvlllgi~~~ilylv~rP 96 (255)
+.+.+..+++++++..+|..|-|
T Consensus 7 ~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 7 VAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHHHHhhheeeeeccCC
Confidence 34445567889999999999977
No 29
>PRK01844 hypothetical protein; Provisional
Probab=59.44 E-value=7.9 Score=27.88 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhee
Q 045040 70 CWTISLLLILIIIIAATVGIL 90 (255)
Q Consensus 70 c~~~~~ll~lvlllgi~~~il 90 (255)
.|+++++.++.+++|++++++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666677778877755
No 30
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=57.99 E-value=33 Score=29.49 Aligned_cols=7 Identities=14% Similarity=0.301 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 045040 70 CWTISLL 76 (255)
Q Consensus 70 c~~~~~l 76 (255)
||+++.+
T Consensus 54 ~~~~~Gi 60 (200)
T PF05473_consen 54 CGILIGI 60 (200)
T ss_pred HHHHHHH
Confidence 4444433
No 31
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=57.52 E-value=31 Score=35.06 Aligned_cols=9 Identities=56% Similarity=0.582 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q 045040 30 SKSDHGDPA 38 (255)
Q Consensus 30 ~~~~~~~p~ 38 (255)
+++....|.
T Consensus 288 ~~~~~~~~~ 296 (656)
T PRK06975 288 SKSVTSQPA 296 (656)
T ss_pred ccCCCCCCC
Confidence 334344444
No 32
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.26 E-value=53 Score=25.71 Aligned_cols=15 Identities=40% Similarity=0.448 Sum_probs=11.5
Q ss_pred eEEEEEEEEEecCCC
Q 045040 120 EATFNVTITARNPNE 134 (255)
Q Consensus 120 ~~~~~v~l~~~NPN~ 134 (255)
+...+.++++.|-|.
T Consensus 51 ~~~y~y~i~ayn~~G 65 (113)
T COG5294 51 SPGYEYTITAYNKNG 65 (113)
T ss_pred CccceeeehhhccCC
Confidence 335668899999987
No 33
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=55.58 E-value=45 Score=26.78 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=36.2
Q ss_pred HhheeeeEeec--CCCEEEEEEEEEeeeecCCCCeeeEEEEEEEEEecCCCeeEEEEecCeEEEEEECCeEeec
Q 045040 86 TVGILWLAFKP--KLPKISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCE 157 (255)
Q Consensus 86 ~~~ilylv~rP--k~P~~~V~s~~v~~f~~~~~~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~ 157 (255)
+.+++|.++.- +.++.++.+.+- ++ .+-.+.+..+++|-.+ ..+.. =.+++.+...+...++
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~------~~~~~~v~g~V~N~g~-~~i~~-c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQ------YSESFYVDGTVTNTGK-FTIKK-CKITVKLYNDKQVSGN 96 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--ee------eccEEEEEEEEEECCC-CEeeE-EEEEEEEEeCCCccCc
Confidence 44444555544 456666555543 33 2466778899999987 45666 3366666665544444
No 34
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=55.49 E-value=9.6 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhheeeeEeec
Q 045040 76 LLILIIIIAATVGILWLAFKP 96 (255)
Q Consensus 76 ll~lvlllgi~~~ilylv~rP 96 (255)
+.+..+++|+++..+|..|-|
T Consensus 9 i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHhhhhhheeCC
Confidence 344556778889999999976
No 35
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=55.17 E-value=50 Score=26.35 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=35.6
Q ss_pred EEEEEEEeeeecCCCCeeeEEEEEEEEEecCCCeeEEEEecCeEEEEE-ECCeEeeccCC
Q 045040 102 SVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGIYYEGGSRINVY-YTDTKLCEGSL 160 (255)
Q Consensus 102 ~V~s~~v~~f~~~~~~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~-Y~g~~Lg~~~l 160 (255)
.++.+++....+.....-+-.+.++.+++|... ....| =.+++++. -+|..+.+-.+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~-P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQAL-PALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccC-ceEEEEEECCCCCEEEEEEE
Confidence 455555544343332234567778899999997 56777 66667666 56666765443
No 36
>PHA02975 hypothetical protein; Provisional
Probab=53.21 E-value=9.7 Score=27.10 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhheeee
Q 045040 68 CMCWTISLLLILIIIIAATVGILWL 92 (255)
Q Consensus 68 ~~c~~~~~ll~lvlllgi~~~ilyl 92 (255)
+..|.+.+++++++++++...++||
T Consensus 41 ~~~~~~~ii~i~~v~~~~~~~flYL 65 (69)
T PHA02975 41 SSLSIILIIFIIFITCIAVFTFLYL 65 (69)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455544444443343444444443
No 37
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=53.05 E-value=4.5 Score=31.79 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=0.0
Q ss_pred CCceehhhHHHHHHHHHHHHHHHHHhheeeeEeec
Q 045040 62 RSCLCKCMCWTISLLLILIIIIAATVGILWLAFKP 96 (255)
Q Consensus 62 r~~ccr~~c~~~~~ll~lvlllgi~~~ilylv~rP 96 (255)
|+.|.|.+-|.-+.+|+.++++|-++. .|++|+=
T Consensus 25 ~~s~sra~~vagltvLa~LLiAGQa~T-aYfv~~Q 58 (114)
T PF09307_consen 25 RGSCSRALKVAGLTVLACLLIAGQAVT-AYFVFQQ 58 (114)
T ss_dssp -----------------------------------
T ss_pred CCCccchhHHHHHHHHHHHHHHhHHHH-HHHHHHh
Confidence 456777777766666666666665555 4667753
No 38
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.97 E-value=14 Score=26.45 Aligned_cols=19 Identities=26% Similarity=0.618 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhe
Q 045040 71 WTISLLLILIIIIAATVGI 89 (255)
Q Consensus 71 ~~~~~ll~lvlllgi~~~i 89 (255)
|+.++++++.+++|++.+.
T Consensus 4 ~lail~ivl~ll~G~~~G~ 22 (71)
T COG3763 4 WLAILLIVLALLAGLIGGF 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556667777788888874
No 39
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=51.63 E-value=35 Score=28.37 Aligned_cols=37 Identities=14% Similarity=0.364 Sum_probs=18.8
Q ss_pred EEEEEEEecCCCeeEEEEecCeEEEEEECCe-EeeccCC
Q 045040 123 FNVTITARNPNEKIGIYYEGGSRINVYYTDT-KLCEGSL 160 (255)
Q Consensus 123 ~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~-~Lg~~~l 160 (255)
..+.+.+..-+..+.+.| .++-=++|=.|+ .+++|.+
T Consensus 78 ~~v~F~vtD~~~~v~V~Y-~GilPDlFrEG~gVVveG~~ 115 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSY-EGILPDLFREGQGVVVQGTL 115 (159)
T ss_pred cEEEEEEEcCCcEEEEEE-eccCCccccCCCeEEEEEEE
Confidence 344555555566666666 444334444443 3445544
No 40
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=50.63 E-value=1.3e+02 Score=25.67 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=17.5
Q ss_pred ecCCCEEEEEEEEEeeeecCC
Q 045040 95 KPKLPKISVDRMQVSQLNLSD 115 (255)
Q Consensus 95 rPk~P~~~V~s~~v~~f~~~~ 115 (255)
.++.|.|.+++++...|+.+.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~G 57 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPEG 57 (192)
T ss_pred CCCCCCEEEeccEEEEECCCC
Confidence 467799999999999988653
No 41
>PRK00523 hypothetical protein; Provisional
Probab=50.38 E-value=15 Score=26.42 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhee
Q 045040 71 WTISLLLILIIIIAATVGIL 90 (255)
Q Consensus 71 ~~~~~ll~lvlllgi~~~il 90 (255)
|++++++++++++|++++++
T Consensus 5 ~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555556667777777754
No 42
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.11 E-value=8.6 Score=31.64 Aligned_cols=30 Identities=27% Similarity=0.515 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhheeeeEeecC
Q 045040 68 CMCWTISLLLILIIIIAATVGILWLAFKPK 97 (255)
Q Consensus 68 ~~c~~~~~ll~lvlllgi~~~ilylv~rPk 97 (255)
.+-|+.+++++|+.+++.+++++|....|.
T Consensus 5 ~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 5 HLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred EeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 456777777777778888888889888873
No 43
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=49.05 E-value=8.4 Score=39.53 Aligned_cols=36 Identities=28% Similarity=0.559 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhheeeeEeecCCCEEE
Q 045040 67 KCMCWTISLLLILIIIIAATVGILWLAFKPKLPKIS 102 (255)
Q Consensus 67 r~~c~~~~~ll~lvlllgi~~~ilylv~rPk~P~~~ 102 (255)
|.+||++.++++++++.+.+++++|+.+.++.|.+.
T Consensus 3 r~i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~~ 38 (797)
T COG5009 3 KLIKYLLGILVTLILLGAGALAGLYLYISPDLPDVE 38 (797)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChH
Confidence 456777777766666666667777778889988764
No 44
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=46.74 E-value=19 Score=37.47 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=17.1
Q ss_pred CCceehhhHHHHHHHHHHHHHHHHHhh
Q 045040 62 RSCLCKCMCWTISLLLILIIIIAATVG 88 (255)
Q Consensus 62 r~~ccr~~c~~~~~ll~lvlllgi~~~ 88 (255)
+..|-|++|.++++++++++++|++++
T Consensus 134 ~~~c~R~~l~~~L~~~~~~il~g~i~a 160 (806)
T PF05478_consen 134 NDACRRGCLGILLLLLTLIILFGVICA 160 (806)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666677776654
No 45
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=46.26 E-value=13 Score=38.46 Aligned_cols=13 Identities=15% Similarity=0.478 Sum_probs=5.9
Q ss_pred HHHHHHHhheeee
Q 045040 80 IIIIAATVGILWL 92 (255)
Q Consensus 80 vlllgi~~~ilyl 92 (255)
+++++++++|++.
T Consensus 161 vl~i~~ligv~~~ 173 (865)
T KOG4331|consen 161 VLAIELLIGVFRA 173 (865)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444555443
No 46
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=45.20 E-value=18 Score=28.67 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 045040 70 CWTISLLLIL 79 (255)
Q Consensus 70 c~~~~~ll~l 79 (255)
.|+++++++|
T Consensus 4 l~~iii~~i~ 13 (130)
T PF12273_consen 4 LFAIIIVAIL 13 (130)
T ss_pred eHHHHHHHHH
Confidence 3444444333
No 47
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=44.79 E-value=20 Score=31.38 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=9.7
Q ss_pred HHHHHhheeeeEeecCCCEE
Q 045040 82 IIAATVGILWLAFKPKLPKI 101 (255)
Q Consensus 82 llgi~~~ilylv~rPk~P~~ 101 (255)
++|..++.+|-+++||....
T Consensus 171 l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 171 LIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HhhcceEEEEEEeccccccc
Confidence 33433333333778876543
No 48
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.06 E-value=9 Score=35.09 Aligned_cols=7 Identities=0% Similarity=-0.035 Sum_probs=2.6
Q ss_pred eehhhHH
Q 045040 65 LCKCMCW 71 (255)
Q Consensus 65 ccr~~c~ 71 (255)
|||++|+
T Consensus 272 ~i~ii~~ 278 (297)
T KOG0810|consen 272 IIIIIIL 278 (297)
T ss_pred eeeehHH
Confidence 3333333
No 49
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=42.65 E-value=13 Score=29.20 Aligned_cols=12 Identities=8% Similarity=0.506 Sum_probs=7.5
Q ss_pred hheeeeEeecCC
Q 045040 87 VGILWLAFKPKL 98 (255)
Q Consensus 87 ~~ilylv~rPk~ 98 (255)
++++|+.+||..
T Consensus 13 ~~i~yf~iRPQk 24 (113)
T PRK06531 13 LGLIFFMQRQQK 24 (113)
T ss_pred HHHHHheechHH
Confidence 334567799853
No 50
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=42.14 E-value=44 Score=25.08 Aligned_cols=59 Identities=14% Similarity=0.205 Sum_probs=32.3
Q ss_pred CCeeeEEEEEEEEEecCCCee----EEEEecCeEEEEEECCeEeec--cCCCceeecCCCeEEEEEEE
Q 045040 116 NSSLEATFNVTITARNPNEKI----GIYYEGGSRINVYYTDTKLCE--GSLPKFYQGHKNTTVLNIPL 177 (255)
Q Consensus 116 ~~~L~~~~~v~l~~~NPN~k~----gi~Y~~~~~v~v~Y~g~~Lg~--~~lp~F~Q~~~ntt~v~v~l 177 (255)
+..+.-.|++.+++.||...- .+.. ...++.|.|..... -........++++..+.+.+
T Consensus 10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l---~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNL---CAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SSS-EECEEEEE---EEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred CccCCCCEEEEEEEEeCCcCccccceeEE---EEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 344667889999999997521 1111 34566888875422 22233455566665555443
No 51
>PHA02692 hypothetical protein; Provisional
Probab=41.54 E-value=17 Score=26.00 Aligned_cols=9 Identities=33% Similarity=0.829 Sum_probs=3.8
Q ss_pred hHHHHHHHH
Q 045040 69 MCWTISLLL 77 (255)
Q Consensus 69 ~c~~~~~ll 77 (255)
..|...+++
T Consensus 43 ~~~~~~ii~ 51 (70)
T PHA02692 43 VPWTTVFLI 51 (70)
T ss_pred cchHHHHHH
Confidence 345444333
No 52
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=40.88 E-value=1.7e+02 Score=22.68 Aligned_cols=67 Identities=21% Similarity=0.231 Sum_probs=38.8
Q ss_pred EeeccCCCceeecCCCeEEEEEEEEEeecc-chHHHHHHHHHhhcCCcEeEEEEEEEEEEEEEcEEEeeeeEE
Q 045040 154 KLCEGSLPKFYQGHKNTTVLNIPLTGQTEN-ATALVNTLQERQQRTGNVPLNLRVKQPVRIKLGKLKLMKVNF 225 (255)
Q Consensus 154 ~Lg~~~lp~F~Q~~~ntt~v~v~l~g~~~l-~~~~~~~L~~d~~~~G~v~l~v~v~~~vr~kvg~~~~~~~~~ 225 (255)
.+|...+|+... +++.+.. + ......+ ..+...++.+++-....+.+.++.+ .+.++|.++...+..
T Consensus 2 ~f~~~~lP~~~~-~~~~~~~-~-~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i~~ 69 (125)
T PF12505_consen 2 PFATLDLPQIKI-KGNGTIS-I-IDQTLTITDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGIPF 69 (125)
T ss_pred ceEEEECCCEEe-cCCceEE-E-eeeeEEecCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEEee
Confidence 467778899888 3333221 1 2222332 3344567777764556677777766 477888886543433
No 53
>PF14927 Neurensin: Neurensin
Probab=40.79 E-value=81 Score=25.70 Aligned_cols=8 Identities=0% Similarity=0.019 Sum_probs=3.8
Q ss_pred HHHHHhhe
Q 045040 82 IIAATVGI 89 (255)
Q Consensus 82 llgi~~~i 89 (255)
++|+++++
T Consensus 56 l~Gi~~l~ 63 (140)
T PF14927_consen 56 LLGIVALT 63 (140)
T ss_pred HHHHHHHH
Confidence 45554443
No 54
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=40.72 E-value=34 Score=24.12 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=11.3
Q ss_pred HHHHHhheeeeEeecC
Q 045040 82 IIAATVGILWLAFKPK 97 (255)
Q Consensus 82 llgi~~~ilylv~rPk 97 (255)
+.+.+..+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 3344666778899997
No 55
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=40.54 E-value=19 Score=34.63 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=0.0
Q ss_pred Cceehh---------hHHHHHHHHHHHHHHHHHhheee
Q 045040 63 SCLCKC---------MCWTISLLLILIIIIAATVGILW 91 (255)
Q Consensus 63 ~~ccr~---------~c~~~~~ll~lvlllgi~~~ily 91 (255)
.||||+ ++|....++++.++..+++++.|
T Consensus 64 ~CCcr~~~~~~k~~s~~c~~~sLiiltL~~~aaIi~~f 101 (418)
T cd07912 64 RCCDRKPTEERPRHSICCLKWSLVIATLLCCAAIGVGL 101 (418)
T ss_pred hccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHh
No 56
>PTZ00116 signal peptidase; Provisional
Probab=40.37 E-value=1.5e+02 Score=25.40 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=31.1
Q ss_pred cCCCEEEEEEEEEeeeecCC---C--CeeeEEEEEEEEE-ecCCCeeEEEEecCeEEEEEECC
Q 045040 96 PKLPKISVDRMQVSQLNLSD---N--SSLEATFNVTITA-RNPNEKIGIYYEGGSRINVYYTD 152 (255)
Q Consensus 96 Pk~P~~~V~s~~v~~f~~~~---~--~~L~~~~~v~l~~-~NPN~k~gi~Y~~~~~v~v~Y~g 152 (255)
.+.|...|.-..|.+|..+. . ..++.++++.|+- -|=|.|.-+-| +.+.|.+
T Consensus 36 ~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFvy-----v~a~Y~t 93 (185)
T PTZ00116 36 EKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFLY-----VLVTYET 93 (185)
T ss_pred CCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEEE-----EEEEEcC
Confidence 35565666655566776433 1 2344444444442 38888877777 7778865
No 57
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=40.16 E-value=26 Score=27.49 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhheeeeEeec
Q 045040 72 TISLLLILIIIIAATVGILWLAFKP 96 (255)
Q Consensus 72 ~~~~ll~lvlllgi~~~ilylv~rP 96 (255)
++.++++|++-+++..+++||+++-
T Consensus 64 fvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 64 FVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeec
Confidence 3444455666777777888887764
No 58
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=39.06 E-value=31 Score=30.42 Aligned_cols=12 Identities=33% Similarity=1.049 Sum_probs=8.0
Q ss_pred HHhheeeeEeec
Q 045040 85 ATVGILWLAFKP 96 (255)
Q Consensus 85 i~~~ilylv~rP 96 (255)
+++++.|+.+||
T Consensus 237 ~~Ia~aW~~yRP 248 (248)
T PF07787_consen 237 LTIALAWLFYRP 248 (248)
T ss_pred HHHHHhheeeCc
Confidence 345556888887
No 59
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=38.13 E-value=18 Score=37.55 Aligned_cols=19 Identities=16% Similarity=0.576 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhheee
Q 045040 72 TISLLLILIIIIAATVGILW 91 (255)
Q Consensus 72 ~~~~ll~lvlllgi~~~ily 91 (255)
++.+ ++++++++++++++.
T Consensus 141 ~l~~-~L~~~~~~il~g~i~ 159 (806)
T PF05478_consen 141 CLGI-LLLLLTLIILFGVIC 159 (806)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 4444 445566666666654
No 60
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=37.35 E-value=16 Score=23.89 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=9.6
Q ss_pred HHHHHhheeeeEeecCC
Q 045040 82 IIAATVGILWLAFKPKL 98 (255)
Q Consensus 82 llgi~~~ilylv~rPk~ 98 (255)
++++.++++|.+++|+.
T Consensus 18 ~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 18 FFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHcccc
Confidence 33444555555777863
No 61
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=37.06 E-value=18 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=8.6
Q ss_pred HHHHhheeeeEeecCC
Q 045040 83 IAATVGILWLAFKPKL 98 (255)
Q Consensus 83 lgi~~~ilylv~rPk~ 98 (255)
+++.++|++-+|+|+.
T Consensus 20 ~~~Figiv~wa~~p~~ 35 (48)
T cd01324 20 ALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 3444444455777853
No 62
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=36.62 E-value=14 Score=21.13 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=11.2
Q ss_pred HHHHHHHhheeeeEeecCC
Q 045040 80 IIIIAATVGILWLAFKPKL 98 (255)
Q Consensus 80 vlllgi~~~ilylv~rPk~ 98 (255)
++.+++++-.+|..++|.+
T Consensus 6 ~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 6 IVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 3445555666666678753
No 63
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=36.62 E-value=43 Score=27.63 Aligned_cols=18 Identities=17% Similarity=0.536 Sum_probs=11.1
Q ss_pred HHHHHHHHhheeeeEeec
Q 045040 79 LIIIIAATVGILWLAFKP 96 (255)
Q Consensus 79 lvlllgi~~~ilylv~rP 96 (255)
|++++..+++.+|-+=+.
T Consensus 19 l~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 19 LLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHhcceEEEeecc
Confidence 334455667778876654
No 64
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=36.58 E-value=38 Score=28.70 Aligned_cols=15 Identities=20% Similarity=0.281 Sum_probs=7.8
Q ss_pred EEecCeEEEEEECCeE
Q 045040 139 YYEGGSRINVYYTDTK 154 (255)
Q Consensus 139 ~Y~~~~~v~v~Y~g~~ 154 (255)
+| =..++++.+.+..
T Consensus 103 ry-Lkv~i~Le~~~~~ 117 (182)
T PRK08455 103 RY-LKTSISLELSNEK 117 (182)
T ss_pred eE-EEEEEEEEECCHh
Confidence 56 3455555555543
No 65
>PHA03049 IMV membrane protein; Provisional
Probab=36.56 E-value=15 Score=26.04 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhheeeeEee
Q 045040 76 LLILIIIIAATVGILWLAFK 95 (255)
Q Consensus 76 ll~lvlllgi~~~ilylv~r 95 (255)
++++++.++++++|+|-+++
T Consensus 5 ~~l~iICVaIi~lIvYgiYn 24 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYN 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555667788888887774
No 66
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=36.26 E-value=18 Score=22.71 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=5.0
Q ss_pred HHhheeeeEe
Q 045040 85 ATVGILWLAF 94 (255)
Q Consensus 85 i~~~ilylv~ 94 (255)
|...|+|.++
T Consensus 23 imliif~f~l 32 (43)
T PF11395_consen 23 IMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHH
Confidence 3344556554
No 67
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=35.87 E-value=1.1e+02 Score=25.40 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=8.7
Q ss_pred eccchHHHHHHHHH
Q 045040 181 TENATALVNTLQER 194 (255)
Q Consensus 181 ~~l~~~~~~~L~~d 194 (255)
...+.++.+.|++.
T Consensus 126 ~YmP~Ev~~al~~~ 139 (155)
T PRK13159 126 TYMPKELKDAMAEG 139 (155)
T ss_pred cCCCHHHHHHHHhc
Confidence 34667766667654
No 68
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=35.78 E-value=24 Score=21.56 Aligned_cols=13 Identities=23% Similarity=0.851 Sum_probs=7.6
Q ss_pred HHHHHHHhheeee
Q 045040 80 IIIIAATVGILWL 92 (255)
Q Consensus 80 vlllgi~~~ilyl 92 (255)
+.+++++++++|+
T Consensus 12 v~iLt~~ILvFWf 24 (34)
T PF08113_consen 12 VMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455666666664
No 69
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=35.77 E-value=2.7e+02 Score=23.44 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=17.9
Q ss_pred eeeEEEEEEEEE-ecCCCeeEEEEecCeEEEEEECC
Q 045040 118 SLEATFNVTITA-RNPNEKIGIYYEGGSRINVYYTD 152 (255)
Q Consensus 118 ~L~~~~~v~l~~-~NPN~k~gi~Y~~~~~v~v~Y~g 152 (255)
.++.+++++|+- -|=|.|--+-| +.+.|.+
T Consensus 65 ~i~fdl~aDls~lfnWNtKq~Fvy-----v~A~Y~t 95 (175)
T PF04573_consen 65 KITFDLDADLSPLFNWNTKQLFVY-----VTAEYET 95 (175)
T ss_pred EEEEEeccCcccceeeeeeEEEEE-----EEEEECC
Confidence 344444444432 37788777777 6677865
No 70
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=35.33 E-value=15 Score=26.06 Aligned_cols=21 Identities=24% Similarity=0.407 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhheeeeEeec
Q 045040 76 LLILIIIIAATVGILWLAFKP 96 (255)
Q Consensus 76 ll~lvlllgi~~~ilylv~rP 96 (255)
++++++.++++++|+|-+++-
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr 25 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNR 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 444556677888888877743
No 71
>PF10694 DUF2500: Protein of unknown function (DUF2500); InterPro: IPR019635 This entry represents a group of proteins that is largely confined to the Gammaproteobacteria. The function is not known. ; PDB: 3RD4_D 2L0C_A 3Q6C_N.
Probab=35.14 E-value=2e+02 Score=21.91 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=17.2
Q ss_pred CCCEEEEEEEEEeee-ecCC---C-----CeeeEEEEEEEEEecCC
Q 045040 97 KLPKISVDRMQVSQL-NLSD---N-----SSLEATFNVTITARNPN 133 (255)
Q Consensus 97 k~P~~~V~s~~v~~f-~~~~---~-----~~L~~~~~v~l~~~NPN 133 (255)
+.|..++...-++.= +... + ..-+..+-+++...|-.
T Consensus 31 ~aP~~sv~a~Vv~Kr~~~~~~~~~~~~~~~~~~~~YyvtFe~e~G~ 76 (110)
T PF10694_consen 31 NAPVRSVPATVVDKRTEVSTHRRSRQREVGSESTEYYVTFEFESGD 76 (110)
T ss_dssp ---EEEEEEEEEEEEEEEEEESGG--SS-SS-EEEEEEEEEESSSS
T ss_pred CCCcEEEEEEEEEeEeEEeCCCCCCCCccCCCceEEEEEEEECCCC
Confidence 558888877666542 1111 0 11344566666666655
No 72
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=34.26 E-value=3.5e+02 Score=24.33 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=13.5
Q ss_pred eeeEEEEEEEEEecCCCe
Q 045040 118 SLEATFNVTITARNPNEK 135 (255)
Q Consensus 118 ~L~~~~~v~l~~~NPN~k 135 (255)
.+..+=++++.++|.|..
T Consensus 83 ~i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 83 VIQSSRNVTLNARNENGS 100 (264)
T ss_pred EEEecCceEEEEecCCCc
Confidence 455566788888999875
No 73
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=34.10 E-value=82 Score=24.52 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=18.7
Q ss_pred eEEEEEEEEEecCCCeeEEEEecCeEEE
Q 045040 120 EATFNVTITARNPNEKIGIYYEGGSRIN 147 (255)
Q Consensus 120 ~~~~~v~l~~~NPN~k~gi~Y~~~~~v~ 147 (255)
..++..++.+.||.. +++.. +..++.
T Consensus 99 g~~~~~~~~l~NPS~-~ti~l-G~v~~~ 124 (125)
T PF12505_consen 99 GINLNATVTLPNPSP-LTIDL-GNVTLN 124 (125)
T ss_pred cEEEEEEEEEcCCCe-EEEEe-ccEEEe
Confidence 566778888888886 77777 655543
No 74
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=34.05 E-value=25 Score=29.17 Aligned_cols=15 Identities=33% Similarity=0.928 Sum_probs=10.2
Q ss_pred HHHHHhheeeeEeec
Q 045040 82 IIAATVGILWLAFKP 96 (255)
Q Consensus 82 llgi~~~ilylv~rP 96 (255)
++|+++.++|+.+||
T Consensus 14 l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 14 LLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHhhhhccCC
Confidence 334444778888998
No 75
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=33.94 E-value=1.2e+02 Score=25.03 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=7.9
Q ss_pred EEecCeEEEEEECCeE
Q 045040 139 YYEGGSRINVYYTDTK 154 (255)
Q Consensus 139 ~Y~~~~~v~v~Y~g~~ 154 (255)
+| =...+++.+.+..
T Consensus 87 ry-Lkv~i~L~~~~~~ 101 (166)
T PRK12785 87 QY-LKLKVVLEVKDEK 101 (166)
T ss_pred eE-EEEEEEEEECCHH
Confidence 55 3355666666543
No 76
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=33.87 E-value=53 Score=24.97 Aligned_cols=10 Identities=10% Similarity=0.285 Sum_probs=4.8
Q ss_pred HHhheeeeEe
Q 045040 85 ATVGILWLAF 94 (255)
Q Consensus 85 i~~~ilylv~ 94 (255)
++.+|.|+++
T Consensus 77 ily~IyYFVI 86 (101)
T PF06024_consen 77 ILYAIYYFVI 86 (101)
T ss_pred HHhhheEEEE
Confidence 3344556544
No 77
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=33.65 E-value=23 Score=30.92 Aligned_cols=7 Identities=14% Similarity=0.173 Sum_probs=3.1
Q ss_pred HHHHHHh
Q 045040 189 NTLQERQ 195 (255)
Q Consensus 189 ~~L~~d~ 195 (255)
.+|.+.+
T Consensus 153 ~Em~~Ai 159 (217)
T PF07423_consen 153 NEMLKAI 159 (217)
T ss_pred HHHHHHH
Confidence 3444444
No 78
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=33.36 E-value=44 Score=32.02 Aligned_cols=11 Identities=18% Similarity=-0.015 Sum_probs=4.3
Q ss_pred CCCCCCCCCCC
Q 045040 45 PFQRTIPVMHS 55 (255)
Q Consensus 45 ~~~~~~~~~~~ 55 (255)
+|.||+++.++
T Consensus 537 aP~rpp~~~a~ 547 (563)
T KOG1785|consen 537 APPRPPRLSAS 547 (563)
T ss_pred CCCCCCCCCcc
Confidence 33444444333
No 79
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=33.10 E-value=42 Score=30.83 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=20.3
Q ss_pred HHHHHHHhheeee---EeecCCCEEEEEEEEEeeeecCC
Q 045040 80 IIIIAATVGILWL---AFKPKLPKISVDRMQVSQLNLSD 115 (255)
Q Consensus 80 vlllgi~~~ilyl---v~rPk~P~~~V~s~~v~~f~~~~ 115 (255)
+++.+++++.+|. -+.|+.|++. ++..=.++.+..
T Consensus 56 ~~la~lf~~~~~~~~~tidp~~P~~~-~~~~~PGl~~~P 93 (300)
T KOG3927|consen 56 GVLAALFAGCMWFMLQTIDPKVPKYK-DSGANPGLSFRP 93 (300)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccc-ccCCCCceeecC
Confidence 4444455555554 4689999999 663333444433
No 80
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=32.50 E-value=36 Score=28.14 Aligned_cols=18 Identities=6% Similarity=0.178 Sum_probs=12.5
Q ss_pred HHHHHhheeeeEeecCCC
Q 045040 82 IIAATVGILWLAFKPKLP 99 (255)
Q Consensus 82 llgi~~~ilylv~rPk~P 99 (255)
+|+++++++|+..|.|.=
T Consensus 63 ll~il~lvf~~c~r~kkt 80 (154)
T PF04478_consen 63 LLGILALVFIFCIRRKKT 80 (154)
T ss_pred HHHHHHhheeEEEecccC
Confidence 345667777888888753
No 81
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=31.87 E-value=24 Score=20.87 Aligned_cols=20 Identities=5% Similarity=0.177 Sum_probs=11.5
Q ss_pred HHHHHHHHhheeeeEeecCC
Q 045040 79 LIIIIAATVGILWLAFKPKL 98 (255)
Q Consensus 79 lvlllgi~~~ilylv~rPk~ 98 (255)
.++.+|+.+-.+|-.+||..
T Consensus 9 ~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 34445555555566678853
No 82
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=31.83 E-value=18 Score=33.16 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhheeeeEee
Q 045040 74 SLLLILIIIIAATVGILWLAFK 95 (255)
Q Consensus 74 ~~ll~lvlllgi~~~ilylv~r 95 (255)
...++.++++.++.+|+||++|
T Consensus 259 ~aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 259 IASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555567777788775
No 83
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=31.16 E-value=3.5e+02 Score=23.45 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=30.4
Q ss_pred CCeeeEEEEEEEEEecCCCeeEEEE-ecCeEEEEEECCeEee
Q 045040 116 NSSLEATFNVTITARNPNEKIGIYY-EGGSRINVYYTDTKLC 156 (255)
Q Consensus 116 ~~~L~~~~~v~l~~~NPN~k~gi~Y-~~~~~v~v~Y~g~~Lg 156 (255)
...+...-..++.++=||+ +.+.+ .+..+..++|.|..+.
T Consensus 34 gqklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 34 GQKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred CceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEE
Confidence 3567888889999999997 88887 3455667888887654
No 84
>PF14992 TMCO5: TMCO5 family
Probab=31.13 E-value=25 Score=31.90 Aligned_cols=23 Identities=4% Similarity=0.161 Sum_probs=12.6
Q ss_pred CCceehhhHHHHHHHHHHHHHHH
Q 045040 62 RSCLCKCMCWTISLLLILIIIIA 84 (255)
Q Consensus 62 r~~ccr~~c~~~~~ll~lvlllg 84 (255)
+-.|-|.|+|+++.+++|+-++|
T Consensus 211 ~~~wkr~lr~l~f~vL~f~~LL~ 233 (280)
T PF14992_consen 211 PTFWKRALRLLFFMVLFFTRLLG 233 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666665555555555554
No 85
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=31.03 E-value=54 Score=22.46 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=8.8
Q ss_pred HHhheeeeEeecC
Q 045040 85 ATVGILWLAFKPK 97 (255)
Q Consensus 85 i~~~ilylv~rPk 97 (255)
++++++|+.-||+
T Consensus 44 ~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 44 FIVVFVYLKTRPR 56 (56)
T ss_pred HHhheeEEeccCC
Confidence 3456678888874
No 86
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=30.62 E-value=1.1e+02 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=18.9
Q ss_pred EEEEEecCCCeeEEEEecCeEEEEEECCe-EeeccCC
Q 045040 125 VTITARNPNEKIGIYYEGGSRINVYYTDT-KLCEGSL 160 (255)
Q Consensus 125 v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~-~Lg~~~l 160 (255)
+.+.+..-|.++.+.| .+.-=++|=+|+ -+++|.+
T Consensus 74 v~F~vtD~~~~v~V~Y-~GiLPDLFREGQgVVa~G~~ 109 (153)
T COG2332 74 VSFVVTDGNKSVTVSY-EGILPDLFREGQGVVAEGQL 109 (153)
T ss_pred EEEEEecCCceEEEEE-eccCchhhhcCCeEEEEEEe
Confidence 3344446677778888 544444554444 3445544
No 87
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=30.08 E-value=3.5e+02 Score=26.47 Aligned_cols=60 Identities=10% Similarity=0.157 Sum_probs=32.3
Q ss_pred ecCCCEEEEEEEEEeeeecCCC-CeeeEEEEEEEEEecCCCeeEEEE----ecCeEEEEEECCeE
Q 045040 95 KPKLPKISVDRMQVSQLNLSDN-SSLEATFNVTITARNPNEKIGIYY----EGGSRINVYYTDTK 154 (255)
Q Consensus 95 rPk~P~~~V~s~~v~~f~~~~~-~~L~~~~~v~l~~~NPN~k~gi~Y----~~~~~v~v~Y~g~~ 154 (255)
|=..=.+.|.++...+|..-.| +.-..+++..-...|-.+.+.+++ ++..+|.+.-.|.+
T Consensus 47 r~n~d~I~v~~l~~q~~~yiEdE~~~~~~i~a~w~snn~~~A~p~f~~Pvp~G~~sV~isceG~q 111 (465)
T PF01690_consen 47 RENDDSISVRSLNSQRMRYIEDENWNWVNIDAGWYSNNSVKAIPMFVFPVPKGKWSVEISCEGYQ 111 (465)
T ss_pred cccccceEeeccCceeEEEEecccceeEEecceeEecCcceeeeEEEEecCCceEEEEEEeccee
Confidence 3344455555555555554322 222345555555666666555554 56667777766653
No 88
>PF14221 DUF4330: Domain of unknown function (DUF4330)
Probab=29.92 E-value=3.2e+02 Score=22.63 Aligned_cols=18 Identities=28% Similarity=0.693 Sum_probs=11.0
Q ss_pred HHHHHHHHHhheeeeEee
Q 045040 78 ILIIIIAATVGILWLAFK 95 (255)
Q Consensus 78 ~lvlllgi~~~ilylv~r 95 (255)
+++++++++++++|....
T Consensus 21 ~~lvvl~v~~g~~~~~~~ 38 (168)
T PF14221_consen 21 AILVVLAVVVGIFWKPGL 38 (168)
T ss_pred HHHHHHHHhheeEEEecc
Confidence 344455667777776554
No 89
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=29.66 E-value=54 Score=28.92 Aligned_cols=8 Identities=25% Similarity=1.066 Sum_probs=3.9
Q ss_pred hhHHHHHH
Q 045040 68 CMCWTISL 75 (255)
Q Consensus 68 ~~c~~~~~ 75 (255)
|+.|++++
T Consensus 228 ~~~~~~i~ 235 (251)
T PF09753_consen 228 CWTWLMIF 235 (251)
T ss_pred HHHHHHHH
Confidence 55554433
No 90
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=29.39 E-value=36 Score=30.25 Aligned_cols=7 Identities=29% Similarity=0.899 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 045040 69 MCWTISL 75 (255)
Q Consensus 69 ~c~~~~~ 75 (255)
+||.+++
T Consensus 252 ~c~gI~~ 258 (280)
T COG5074 252 RCYGICF 258 (280)
T ss_pred ehhhhHH
Confidence 3443333
No 91
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=29.09 E-value=2.8e+02 Score=22.68 Aligned_cols=16 Identities=19% Similarity=0.416 Sum_probs=8.4
Q ss_pred EEEEEecCCCeeEEEE
Q 045040 125 VTITARNPNEKIGIYY 140 (255)
Q Consensus 125 v~l~~~NPN~k~gi~Y 140 (255)
+++.+...+..+.+.|
T Consensus 73 ~~F~ltD~~~~i~V~Y 88 (148)
T PRK13254 73 VRFVVTDGNATVPVVY 88 (148)
T ss_pred EEEEEEeCCeEEEEEE
Confidence 3444444455566666
No 92
>COG5612 Predicted integral membrane protein [Function unknown]
Probab=28.91 E-value=39 Score=27.16 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=12.9
Q ss_pred HHHHHHHHH-HHHHHHHhh-eeee
Q 045040 71 WTISLLLIL-IIIIAATVG-ILWL 92 (255)
Q Consensus 71 ~~~~~ll~l-vlllgi~~~-ilyl 92 (255)
|+++.++++ ++++|..++ +.|+
T Consensus 6 ~lli~livlNvFL~galAGa~vyv 29 (148)
T COG5612 6 PLLIGLIVLNVFLIGALAGAVVYV 29 (148)
T ss_pred ceehhHHHHHHHHHHHhccceEEE
Confidence 555555555 666676655 5664
No 93
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=28.61 E-value=3.1e+02 Score=21.94 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=34.0
Q ss_pred CeeeEEEEEEEEEecCCCeeEEEEecCeEEEEEE---CCeEeeccCCCceeecCCCeEEEE
Q 045040 117 SSLEATFNVTITARNPNEKIGIYYEGGSRINVYY---TDTKLCEGSLPKFYQGHKNTTVLN 174 (255)
Q Consensus 117 ~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y---~g~~Lg~~~lp~F~Q~~~ntt~v~ 174 (255)
.....++.++|++||.+.+-.|+. ..+-| +|..+-+---.+.+.++-.+..+-
T Consensus 19 ~~~~~~Lt~tLSiRNtd~~~~i~i-----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~v 74 (125)
T PF11322_consen 19 KHRPFNLTATLSIRNTDPTDPIYI-----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFV 74 (125)
T ss_pred CCceEeEEEEEEEEcCCCCCCEEE-----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEE
Confidence 345678899999999998777776 23444 344444433345666776665553
No 94
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=28.53 E-value=21 Score=28.35 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=8.0
Q ss_pred HHHHhheeeeEeec-CCCEEEEEE
Q 045040 83 IAATVGILWLAFKP-KLPKISVDR 105 (255)
Q Consensus 83 lgi~~~ilylv~rP-k~P~~~V~s 105 (255)
+|++++|+|++-|= |.+...++.
T Consensus 78 Ig~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 78 IGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHhccCCCCCCC
Confidence 45566666665533 555555555
No 95
>KOG4298 consensus CAP-binding protein complex interacting protein 2 [RNA processing and modification]
Probab=28.49 E-value=84 Score=27.06 Aligned_cols=31 Identities=29% Similarity=0.755 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHhheeeeEeec-CCC
Q 045040 69 MCWTISLLLILIIIIAATVGILWLAFKP-KLP 99 (255)
Q Consensus 69 ~c~~~~~ll~lvlllgi~~~ilylv~rP-k~P 99 (255)
+.|.|..++.+++.++=+++++|.-|-| +.|
T Consensus 148 laW~FST~iGllLFL~Ei~llcwvKF~~v~~P 179 (245)
T KOG4298|consen 148 LAWAFSTVIGLLLFLAEIVLLCWVKFLPVGYP 179 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeecCCCc
Confidence 5699999888888888888899987776 445
No 96
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=28.25 E-value=68 Score=20.27 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHhheeeeEeecC
Q 045040 69 MCWTISLLLILIIIIAATVGILWLAFKPK 97 (255)
Q Consensus 69 ~c~~~~~ll~lvlllgi~~~ilylv~rPk 97 (255)
..|++.++ ++-++..++|++++.+
T Consensus 23 ~~W~~~i~-----~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 23 ILWLIVIL-----FFPIIGPILYLIFGRK 46 (46)
T ss_pred hHHHHHHH-----HHHHHHHhheEEEeCC
Confidence 46655432 3456777789888653
No 97
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=27.90 E-value=59 Score=29.12 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=11.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhh
Q 045040 67 KCMCWTISLLLILIIIIAATVG 88 (255)
Q Consensus 67 r~~c~~~~~ll~lvlllgi~~~ 88 (255)
|+++++++.++++++.+|++++
T Consensus 197 R~i~f~llgllfliiaigltvG 218 (256)
T PF09788_consen 197 RAIIFFLLGLLFLIIAIGLTVG 218 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3445555555555555555544
No 98
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.83 E-value=1e+02 Score=33.30 Aligned_cols=36 Identities=28% Similarity=0.679 Sum_probs=22.6
Q ss_pred CCCCCCCceehhhH--HHHHHHHHHHHHHHHHhheeeeEeec
Q 045040 57 PPKRKRSCLCKCMC--WTISLLLILIIIIAATVGILWLAFKP 96 (255)
Q Consensus 57 ~~k~rr~~ccr~~c--~~~~~ll~lvlllgi~~~ilylv~rP 96 (255)
+..+.|+||-|..| |+=.+..+.+++=+++++ .|||
T Consensus 64 qttrprswclr~vcnpwfe~vsmlvillncvtlg----mfrp 101 (1956)
T KOG2302|consen 64 QTTRPRSWCLRMVCNPWFECVSMLVILLNCVTLG----MFRP 101 (1956)
T ss_pred cCCCchhHHHHhhccHHHHHHHHHHHHHhhhhhc----cccc
Confidence 33445789999888 776665555555555544 3566
No 99
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=27.37 E-value=16 Score=21.08 Aligned_cols=18 Identities=6% Similarity=0.355 Sum_probs=10.4
Q ss_pred HHHHHHhheeeeEeecCC
Q 045040 81 IIIAATVGILWLAFKPKL 98 (255)
Q Consensus 81 lllgi~~~ilylv~rPk~ 98 (255)
+.+++++..+|..+||..
T Consensus 6 l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 6 LAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHhCHHh
Confidence 344555555566678753
No 100
>PRK14762 membrane protein; Provisional
Probab=26.85 E-value=1e+02 Score=17.61 Aligned_cols=7 Identities=14% Similarity=0.748 Sum_probs=3.8
Q ss_pred hhHHHHH
Q 045040 68 CMCWTIS 74 (255)
Q Consensus 68 ~~c~~~~ 74 (255)
.+.|++.
T Consensus 3 i~lw~i~ 9 (27)
T PRK14762 3 IILWAVL 9 (27)
T ss_pred eHHHHHH
Confidence 4567543
No 101
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=26.61 E-value=72 Score=28.44 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=39.9
Q ss_pred HHHhheeeeEeecCCCEEEEEEEEEee-eecCC-----------C-CeeeE--------------EEEEEEEEecCCCee
Q 045040 84 AATVGILWLAFKPKLPKISVDRMQVSQ-LNLSD-----------N-SSLEA--------------TFNVTITARNPNEKI 136 (255)
Q Consensus 84 gi~~~ilylv~rPk~P~~~V~s~~v~~-f~~~~-----------~-~~L~~--------------~~~v~l~~~NPN~k~ 136 (255)
++.++++|...-+..|.|.+..+.+++ .+++. + ..++. -=+++++=.=||+ +
T Consensus 43 ~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~~Pnt-v 121 (269)
T COG1589 43 LLVLVVLWVLILLSLPYFPIRKVSVSGNNQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQFPNT-L 121 (269)
T ss_pred HHHHHHHheehhhhcCCccceEEEEecCcccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEeCCCc-E
Confidence 444556677777888999999999986 22321 0 00110 1123444456887 7
Q ss_pred EEEEecCeEEEEEE
Q 045040 137 GIYYEGGSRINVYY 150 (255)
Q Consensus 137 gi~Y~~~~~v~v~Y 150 (255)
.|.-++.-.+.+|-
T Consensus 122 ~I~v~Er~piA~w~ 135 (269)
T COG1589 122 EIEVVEREPIAYWQ 135 (269)
T ss_pred EEEEEEeeeEEEEe
Confidence 88876666666665
No 102
>PF15482 CCER1: Coiled-coil domain-containing glutamate-rich protein family 1
Probab=26.59 E-value=19 Score=30.46 Aligned_cols=8 Identities=75% Similarity=2.494 Sum_probs=6.2
Q ss_pred ceehhhHH
Q 045040 64 CLCKCMCW 71 (255)
Q Consensus 64 ~ccr~~c~ 71 (255)
|.|||.||
T Consensus 113 c~cccscw 120 (214)
T PF15482_consen 113 CLCCCSCW 120 (214)
T ss_pred hheecccc
Confidence 67778887
No 103
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=26.57 E-value=31 Score=23.96 Aligned_cols=11 Identities=18% Similarity=0.978 Sum_probs=7.1
Q ss_pred hheeeeEeecC
Q 045040 87 VGILWLAFKPK 97 (255)
Q Consensus 87 ~~ilylv~rPk 97 (255)
++++|.+|||+
T Consensus 23 iavi~~ayr~~ 33 (60)
T COG4736 23 IAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHhccc
Confidence 44456688885
No 104
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=25.98 E-value=85 Score=18.11 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhhee
Q 045040 71 WTISLLLILIIIIAATVGIL 90 (255)
Q Consensus 71 ~~~~~ll~lvlllgi~~~il 90 (255)
|+..+..++.+++++..+++
T Consensus 7 w~~~i~al~~lv~~iTGl~l 26 (27)
T PF03929_consen 7 WFGDIFALFMLVFAITGLIL 26 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 43333333334444444443
No 105
>PHA03292 envelope glycoprotein I; Provisional
Probab=25.95 E-value=1.3e+02 Score=28.69 Aligned_cols=7 Identities=43% Similarity=0.600 Sum_probs=2.8
Q ss_pred CCCCcCC
Q 045040 21 TAPLVPR 27 (255)
Q Consensus 21 ~~~~~~~ 27 (255)
++|..|+
T Consensus 286 ~~p~~~~ 292 (413)
T PHA03292 286 TPPPDPS 292 (413)
T ss_pred CCCCCcc
Confidence 3443343
No 106
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=25.81 E-value=1.1e+02 Score=19.06 Aligned_cols=11 Identities=18% Similarity=0.537 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 045040 70 CWTISLLLILI 80 (255)
Q Consensus 70 c~~~~~ll~lv 80 (255)
.|+++.+..++
T Consensus 15 ~Wi~F~l~mi~ 25 (38)
T PF09125_consen 15 GWIAFALAMIL 25 (38)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 47665554433
No 107
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=25.47 E-value=26 Score=23.97 Aligned_cols=9 Identities=0% Similarity=-0.094 Sum_probs=6.7
Q ss_pred EeecCCCEE
Q 045040 93 AFKPKLPKI 101 (255)
Q Consensus 93 v~rPk~P~~ 101 (255)
.|-|+.|.+
T Consensus 31 ~l~qq~~~y 39 (61)
T PF06692_consen 31 SLGQQGNTY 39 (61)
T ss_pred hhccCCCee
Confidence 567888876
No 108
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.74 E-value=31 Score=31.57 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=10.6
Q ss_pred CCceehhhHHHHHHHHHHH
Q 045040 62 RSCLCKCMCWTISLLLILI 80 (255)
Q Consensus 62 r~~ccr~~c~~~~~ll~lv 80 (255)
+.++-.|+||+++++++++
T Consensus 266 kaRK~k~i~ii~~iii~~v 284 (297)
T KOG0810|consen 266 KARKWKIIIIIILIIIIVV 284 (297)
T ss_pred HhhhceeeeehHHHHHHHH
Confidence 3456666666665554433
No 109
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=23.07 E-value=1.3e+02 Score=23.43 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=24.8
Q ss_pred cCCCeeEEEEecCeEEEEEECCeEeeccCCCceee
Q 045040 131 NPNEKIGIYYEGGSRINVYYTDTKLCEGSLPKFYQ 165 (255)
Q Consensus 131 NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~~lp~F~Q 165 (255)
|||. .=+.||.+.+++|-|.|..+.-|.-..|.+
T Consensus 40 ~pNY-vf~~FEnG~tvsv~~~gs~~kI~~~Dd~r~ 73 (121)
T PF06919_consen 40 TPNY-VFMRFENGITVSVTYNGSIFKIGLDDDHRE 73 (121)
T ss_pred CCCE-EEEEecCCCEEEEEecCcEEEEEecCchhh
Confidence 9998 558899999999999987554443333433
No 110
>COG4968 PilE Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.73 E-value=56 Score=26.57 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhheee
Q 045040 70 CWTISLLLILIIIIAATVGILW 91 (255)
Q Consensus 70 c~~~~~ll~lvlllgi~~~ily 91 (255)
+++++=|++.++++||.++|.|
T Consensus 7 GFTLIELmIvVaIv~ILa~IAy 28 (139)
T COG4968 7 GFTLIELMIVVAIVGILALIAY 28 (139)
T ss_pred CccHHHHHHHHHHHHHHHHHHh
Confidence 7888888888889999999998
No 111
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=22.34 E-value=1.1e+02 Score=28.89 Aligned_cols=6 Identities=17% Similarity=-0.081 Sum_probs=2.6
Q ss_pred HHHHHH
Q 045040 71 WTISLL 76 (255)
Q Consensus 71 ~~~~~l 76 (255)
|.++++
T Consensus 23 ~~~~~~ 28 (390)
T PRK15136 23 ALLLLT 28 (390)
T ss_pred HHHHHH
Confidence 444433
No 112
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=22.33 E-value=88 Score=27.35 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=21.5
Q ss_pred HHHHHHHHHhheeeeEeecCCCEEEEE
Q 045040 78 ILIIIIAATVGILWLAFKPKLPKISVD 104 (255)
Q Consensus 78 ~lvlllgi~~~ilylv~rPk~P~~~V~ 104 (255)
+++++++++++-.|..|+-..|+=.-.
T Consensus 164 l~lllv~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 164 LLLLLVALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHHHHHHHhhcceEEEEEEeccccccc
Confidence 345689999999999999988876644
No 113
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=21.48 E-value=1e+02 Score=27.10 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=11.8
Q ss_pred ehhhHHHHHHHHHHHHHHHHHhh
Q 045040 66 CKCMCWTISLLLILIIIIAATVG 88 (255)
Q Consensus 66 cr~~c~~~~~ll~lvlllgi~~~ 88 (255)
-|++||+++.|++++..++++.+
T Consensus 208 ~Ra~~ffilal~~avta~~lt~g 230 (275)
T KOG4684|consen 208 RRALLFFILALTVAVTAVILTMG 230 (275)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Confidence 34566666555555444444433
No 114
>PF11606 AlcCBM31: Family 31 carbohydrate binding protein; InterPro: IPR021016 Beta-1,3-xylan is a homopolymer of b-1,3-linked D-xylose and is a polysaccharide peculiar to marine algae. Beta-1,3-xylanase is a beta-1,3-xylan hydrolyzing enzyme [].; GO: 0033905 xylan endo-1,3-beta-xylosidase activity; PDB: 2COV_F.
Probab=21.11 E-value=87 Score=23.35 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.1
Q ss_pred ecCCCeeEEEEecCeEEEEEECCe
Q 045040 130 RNPNEKIGIYYEGGSRINVYYTDT 153 (255)
Q Consensus 130 ~NPN~k~gi~Y~~~~~v~v~Y~g~ 153 (255)
+|++..+++.|.+..++.|+..+.
T Consensus 4 e~c~~dFg~~Yvsds~ievfH~d~ 27 (93)
T PF11606_consen 4 ENCSEDFGYNYVSDSEIEVFHKDN 27 (93)
T ss_dssp GGGTSSEEEEEEETTEEEEEEE--
T ss_pred CCcchhhCeeeecCceEEEEEecC
Confidence 588999999998999999998765
No 115
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.86 E-value=47 Score=31.19 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=20.1
Q ss_pred CCCCCCCCCCce-ehh-hHHHHHHHHHHHHHHHHHhheeeeEee
Q 045040 54 HSKPPKRKRSCL-CKC-MCWTISLLLILIIIIAATVGILWLAFK 95 (255)
Q Consensus 54 ~~~~~k~rr~~c-cr~-~c~~~~~ll~lvlllgi~~~ilylv~r 95 (255)
|.-|+.=|++.. -+. .+|++.++|+|+|+=.|+.+|.|+++.
T Consensus 208 PLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 208 PLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred ccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444554455432 222 334444444454454555566666654
No 116
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=20.48 E-value=95 Score=26.64 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=12.1
Q ss_pred ceehhhHHHHHHHHHHHHHHHHHhheee
Q 045040 64 CLCKCMCWTISLLLILIIIIAATVGILW 91 (255)
Q Consensus 64 ~ccr~~c~~~~~ll~lvlllgi~~~ily 91 (255)
|||.|+.|+..+|- ++..+.++|.|
T Consensus 100 ~cc~~lr~vcl~Ln---ivg~vt~~VvW 124 (192)
T PTZ00201 100 YGCTIHRWVCLALN---IVGAVTLGVVW 124 (192)
T ss_pred HccchHHHHHHHHH---HHHHHHHheee
Confidence 35556666544332 22233455566
No 117
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=20.37 E-value=41 Score=31.59 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhheeeeEee
Q 045040 73 ISLLLILIIIIAATVGILWLAFK 95 (255)
Q Consensus 73 ~~~ll~lvlllgi~~~ilylv~r 95 (255)
+.+.++.++++.++.+|+||+||
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILR 334 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILR 334 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555567788898876
No 118
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=20.29 E-value=42 Score=26.11 Aligned_cols=7 Identities=57% Similarity=1.279 Sum_probs=4.1
Q ss_pred heeeeEe
Q 045040 88 GILWLAF 94 (255)
Q Consensus 88 ~ilylv~ 94 (255)
+|+||++
T Consensus 11 li~~Lv~ 17 (108)
T PF12321_consen 11 LIFWLVF 17 (108)
T ss_pred HHHHHHH
Confidence 5566654
No 119
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=20.09 E-value=1.3e+02 Score=31.16 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 045040 17 QQKPTAPLVPRDTSKSDHGDPAAAERYPPFQRTIPVMHSKPP 58 (255)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 58 (255)
+++|.+|+-+...+.+ ++++||.++.+|.++++++
T Consensus 281 ~ppppap~p~~~~~~a-------~p~p~~~~~~pPppp~~pp 315 (830)
T KOG1923|consen 281 GPPPPAPLPHTAQSDA-------APSPLRLRCSPPPPPPFPP 315 (830)
T ss_pred CCCCCCCCCCcccccC-------CCCCCCCCCCCCCCCCCCC
Done!