Query 045040
Match_columns 255
No_of_seqs 174 out of 839
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 16:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.5 6.3E-07 2.2E-11 74.3 9.6 105 97-212 43-148 (174)
2 1xo8_A AT1G01470; structural g 98.3 7.9E-07 2.7E-11 72.1 6.4 105 97-212 20-125 (151)
3 3but_A Uncharacterized protein 98.0 9.2E-05 3.1E-09 58.9 11.8 71 120-192 17-89 (136)
4 3hd7_B Syntaxin-1A; membrane p 76.4 0.25 8.5E-06 37.3 -1.8 6 83-88 100-105 (109)
5 3hd7_B Syntaxin-1A; membrane p 63.5 5.5 0.00019 29.7 3.2 7 79-85 100-106 (109)
6 2knc_B Integrin beta-3; transm 48.3 9.6 0.00033 26.9 2.2 22 71-92 12-33 (79)
7 3vmt_A Monofunctional glycosyl 43.0 11 0.00037 32.7 2.1 12 21-32 11-22 (263)
8 3j1r_A Archaeal adhesion filam 42.3 6.9 0.00023 21.6 0.5 7 87-93 18-24 (26)
9 2k9j_B Integrin beta-3; transm 39.5 18 0.00061 22.4 2.2 22 70-91 10-31 (43)
10 1fm5_A Early activation antige 28.9 12 0.0004 30.3 0.0 9 69-77 42-50 (199)
11 2l8s_A Integrin alpha-1; trans 28.0 35 0.0012 22.3 2.2 22 78-99 18-41 (54)
12 2lk9_A Bone marrow stromal ant 26.3 54 0.0018 19.2 2.5 19 66-84 3-21 (35)
13 3j00_Z Cell division protein F 25.6 47 0.0016 24.1 2.8 39 68-109 4-42 (98)
14 3ixz_B Potassium-transporting 25.5 32 0.0011 30.1 2.2 24 81-104 50-76 (290)
15 2knc_A Integrin alpha-IIB; tra 25.3 41 0.0014 21.9 2.2 21 78-98 21-43 (54)
16 3s8f_C Cytochrome C oxidase po 25.0 22 0.00076 21.0 0.7 14 79-92 11-24 (34)
17 2k1a_A Integrin alpha-IIB; sin 21.3 58 0.002 20.0 2.2 13 79-91 20-32 (42)
18 1afo_A Glycophorin A; integral 21.2 23 0.0008 21.5 0.3 17 75-91 13-29 (40)
19 3qde_A Cellobiose phosphorylas 21.0 1.5E+02 0.0051 29.5 6.3 68 92-176 742-809 (811)
20 1nrp_R Receptor based peptide 20.2 22 0.00075 19.1 0.0 14 127-140 6-19 (26)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.48 E-value=6.3e-07 Score=74.34 Aligned_cols=105 Identities=14% Similarity=0.224 Sum_probs=81.8
Q ss_pred CCCEEEEEEEEEeeeecCCCCeeeEEEEEEEEEecCCCeeEEEEecCeEEEEEECCeEeeccCCCc-eeecCCCeEEEEE
Q 045040 97 KLPKISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEGSLPK-FYQGHKNTTVLNI 175 (255)
Q Consensus 97 k~P~~~V~s~~v~~f~~~~~~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~~lp~-F~Q~~~ntt~v~v 175 (255)
+.|++++.++++.+++.. ..+|.++|+++|||. +.+.+ .+++..++-+|..|++|.++. +..++++++.+.+
T Consensus 43 ~~PeV~v~~v~~~~~~l~-----~~~~~l~LrV~NPN~-~pLpi-~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~V 115 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD-----GVDYHAKVSVKNPYS-QSIPI-CQISYILKSATRTIASGTIPDPGSLVGSGTTVLDV 115 (174)
T ss_dssp CCCEEEEEEEEEEEECSS-----SEEEEEEEEEEECSS-SCCBC-CSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc-----eEEEEEEEEEECCCC-CCccc-cceEEEEEECCEEEEEEecCCCceECCCCcEEEEE
Confidence 679999999999987764 488999999999998 89999 999999999999999998865 7888899999998
Q ss_pred EEEEeeccchHHHHHHHHHhhcCCcEeEEEEEEEEEE
Q 045040 176 PLTGQTENATALVNTLQERQQRTGNVPLNLRVKQPVR 212 (255)
Q Consensus 176 ~l~g~~~l~~~~~~~L~~d~~~~G~v~l~v~v~~~vr 212 (255)
.++... ....++..++...+.++.++++...+.
T Consensus 116 pv~v~~----~~l~~~~~~l~~~~~i~Y~L~g~L~id 148 (174)
T 1yyc_A 116 PVKVAY----SIAVSLMKDMCTDWDIDYQLDIGLTFD 148 (174)
T ss_dssp EEEESH----HHHHHTCCCCCSSEEECEEEEEEEEEE
T ss_pred EEEEEH----HHHHHHHHhcCCCCccceEEEEEEEec
Confidence 888751 111222233324456777777655444
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.33 E-value=7.9e-07 Score=72.11 Aligned_cols=105 Identities=15% Similarity=0.212 Sum_probs=80.5
Q ss_pred CCCEEEEEEEEEeeeecCCCCeeeEEEEEEEEEecCCCeeEEEEecCeEEEEEECCeEeeccCCCc-eeecCCCeEEEEE
Q 045040 97 KLPKISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEGSLPK-FYQGHKNTTVLNI 175 (255)
Q Consensus 97 k~P~~~V~s~~v~~f~~~~~~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~~lp~-F~Q~~~ntt~v~v 175 (255)
+.|+++|.++++.+++.. ..+|.++++++|||. +.+.+ .+++..++-+|..+++|..+. +..++++++.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~~-----~~~~~~~l~V~NPN~-~~lpi-~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD-----SVEYLAKVSVTNPYS-HSIPI-CEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTTT-----EECEEEEEEEECSSS-SCCCC-EEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCcc-----eeEEEEEEEEECCCC-CCccc-ccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEE
Confidence 679999999999876653 578999999999998 89999 999999999999999998864 7788899999888
Q ss_pred EEEEeeccchHHHHHHHHHhhcCCcEeEEEEEEEEEE
Q 045040 176 PLTGQTENATALVNTLQERQQRTGNVPLNLRVKQPVR 212 (255)
Q Consensus 176 ~l~g~~~l~~~~~~~L~~d~~~~G~v~l~v~v~~~vr 212 (255)
.++... .. ..++..++...+.++.++++...+.
T Consensus 93 pv~v~~---~~-l~~~~~~l~~~~~i~Y~l~g~l~i~ 125 (151)
T 1xo8_A 93 PVVVPY---SI-LFNLARDVGVDWDIDYELQIGLTID 125 (151)
T ss_dssp CCCEEH---HH-HHHHHHHHHHHSEEEEEEEEEEEEC
T ss_pred EEEEEH---HH-HHHHHHhcccCCcccEEEEEEEEEc
Confidence 877761 11 2222233324467787777666544
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.98 E-value=9.2e-05 Score=58.88 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=58.9
Q ss_pred eEEEEEEEEEecCCCeeEEEEecCeEEEEEECCeEeeccC-CCceeecCCCeEEEEEEEEEe-eccchHHHHHHH
Q 045040 120 EATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEGS-LPKFYQGHKNTTVLNIPLTGQ-TENATALVNTLQ 192 (255)
Q Consensus 120 ~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~~-lp~F~Q~~~ntt~v~v~l~g~-~~l~~~~~~~L~ 192 (255)
.+.|.+.|++.|||. +.+.+ ++++..++++|..||+|. ...+..++.+++.+.+.+..+ ..+.+...+-++
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i-~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~ 89 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVV-SGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA 89 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEE-EEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH
T ss_pred EEEEEEEEEEeCCCC-cceee-eceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh
Confidence 678999999999997 89999 999999999999999986 567899999999999998888 445444333333
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=76.36 E-value=0.25 Score=37.29 Aligned_cols=6 Identities=67% Similarity=1.093 Sum_probs=2.3
Q ss_pred HHHHhh
Q 045040 83 IAATVG 88 (255)
Q Consensus 83 lgi~~~ 88 (255)
++++++
T Consensus 100 ~~~~~~ 105 (109)
T 3hd7_B 100 IASTIG 105 (109)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 344433
No 5
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=63.54 E-value=5.5 Score=29.70 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 045040 79 LIIIIAA 85 (255)
Q Consensus 79 lvlllgi 85 (255)
+.+++|+
T Consensus 100 ~~~~~~~ 106 (109)
T 3hd7_B 100 IASTIGG 106 (109)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 3444444
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=48.27 E-value=9.6 Score=26.85 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhheeee
Q 045040 71 WTISLLLILIIIIAATVGILWL 92 (255)
Q Consensus 71 ~~~~~ll~lvlllgi~~~ilyl 92 (255)
.++..+++.++++|++++++|-
T Consensus 12 ~Iv~gvi~gilliGllllliwk 33 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4445556667778888887774
No 7
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=42.96 E-value=11 Score=32.71 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=0.0
Q ss_pred CCCCcCCCCCCC
Q 045040 21 TAPLVPRDTSKS 32 (255)
Q Consensus 21 ~~~~~~~~~~~~ 32 (255)
+.-+||+|+--.
T Consensus 11 ~~~~~~~~~~~~ 22 (263)
T 3vmt_A 11 SSGLVPRGSHMQ 22 (263)
T ss_dssp ------------
T ss_pred ccCcccCCCccc
Confidence 345777765444
No 8
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=42.30 E-value=6.9 Score=21.57 Aligned_cols=7 Identities=14% Similarity=0.135 Sum_probs=3.0
Q ss_pred hheeeeE
Q 045040 87 VGILWLA 93 (255)
Q Consensus 87 ~~ilylv 93 (255)
+.++|++
T Consensus 18 aVllylW 24 (26)
T 3j1r_A 18 AVLLYTW 24 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334543
No 9
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=39.49 E-value=18 Score=22.40 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhheee
Q 045040 70 CWTISLLLILIIIIAATVGILW 91 (255)
Q Consensus 70 c~~~~~ll~lvlllgi~~~ily 91 (255)
-+++...+..++++|++++++|
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777888888777
No 10
>1fm5_A Early activation antigen CD69; C-type lectin-like domain, natural killer cell receptor, lectin, C-type lectin, immune system; 2.27A {Homo sapiens} SCOP: d.169.1.1
Probab=28.90 E-value=12 Score=30.34 Aligned_cols=9 Identities=11% Similarity=0.729 Sum_probs=0.0
Q ss_pred hHHHHHHHH
Q 045040 69 MCWTISLLL 77 (255)
Q Consensus 69 ~c~~~~~ll 77 (255)
.|.++++++
T Consensus 42 ~~~~l~~ll 50 (199)
T 1fm5_A 42 LCAVMNVVF 50 (199)
T ss_dssp ---------
T ss_pred hHHHHHHHH
Confidence 343333333
No 11
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=27.96 E-value=35 Score=22.26 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=12.6
Q ss_pred HHHHHHHHHhheeee--EeecCCC
Q 045040 78 ILIIIIAATVGILWL--AFKPKLP 99 (255)
Q Consensus 78 ~lvlllgi~~~ilyl--v~rPk~P 99 (255)
.-+++++++++++|- .|+-+.|
T Consensus 18 ~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 18 AGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred HHHHHHHHHHHHHHHcCcccCCCc
Confidence 335566677777773 4554443
No 12
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=26.32 E-value=54 Score=19.22 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=7.5
Q ss_pred ehhhHHHHHHHHHHHHHHH
Q 045040 66 CKCMCWTISLLLILIIIIA 84 (255)
Q Consensus 66 cr~~c~~~~~ll~lvlllg 84 (255)
|+...|+=+++++.++.+|
T Consensus 3 cKL~lg~Gvl~LLviV~Lg 21 (35)
T 2lk9_A 3 SKLLLGIGILVLLIIVILG 21 (35)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred ceeeecccHHHHHHHHHhc
Confidence 5566665443333333333
No 13
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Probab=25.60 E-value=47 Score=24.14 Aligned_cols=39 Identities=8% Similarity=0.258 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhheeeeEeecCCCEEEEEEEEEe
Q 045040 68 CMCWTISLLLILIIIIAATVGILWLAFKPKLPKISVDRMQVS 109 (255)
Q Consensus 68 ~~c~~~~~ll~lvlllgi~~~ilylv~rPk~P~~~V~s~~v~ 109 (255)
.++++|+++++..++.|...+..|+.=.+. +-+..+.|+
T Consensus 4 ~~G~~F~l~Vl~~l~~~~~~~~~Wl~~~~~---~PI~~V~V~ 42 (98)
T 3j00_Z 4 LAGILFLLTVLTTVLVSGWVVLGWMEDAQR---LPLSKLVLT 42 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCCCC---CCCCSSSCC
T ss_pred echhhHHHHHHHHHHHHHHHHHHHHhcCCC---CCceEEEEe
Confidence 345555544444444454455566554544 344445554
No 14
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=25.47 E-value=32 Score=30.07 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=14.2
Q ss_pred HHHHHHhhee---eeEeecCCCEEEEE
Q 045040 81 IIIAATVGIL---WLAFKPKLPKISVD 104 (255)
Q Consensus 81 lllgi~~~il---ylv~rPk~P~~~V~ 104 (255)
+|+|++++.+ +..+.|+.|++.-+
T Consensus 50 ~LaglFa~~m~v~l~Tld~~~Pkyqd~ 76 (290)
T 3ixz_B 50 VMSGIFALCIYVLMRTIDPYTPDYQDQ 76 (290)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcccc
Confidence 3334444443 34678999999743
No 15
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.28 E-value=41 Score=21.88 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=12.1
Q ss_pred HHHHHHHHHhheeee--EeecCC
Q 045040 78 ILIIIIAATVGILWL--AFKPKL 98 (255)
Q Consensus 78 ~lvlllgi~~~ilyl--v~rPk~ 98 (255)
.-+++++++++++|- .|+-+.
T Consensus 21 ~GLllL~li~~~LwK~GFFkR~~ 43 (54)
T 2knc_A 21 GGLLLLTILVLAMWKVGFFKRNR 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHcCcccCCC
Confidence 335566667777773 454443
No 16
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=25.05 E-value=22 Score=20.96 Aligned_cols=14 Identities=29% Similarity=0.914 Sum_probs=8.0
Q ss_pred HHHHHHHHhheeee
Q 045040 79 LIIIIAATVGILWL 92 (255)
Q Consensus 79 lvlllgi~~~ilyl 92 (255)
.++++|+++.++|+
T Consensus 11 ~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 11 VILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666666664
No 17
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=21.25 E-value=58 Score=20.00 Aligned_cols=13 Identities=15% Similarity=0.526 Sum_probs=7.9
Q ss_pred HHHHHHHHhheee
Q 045040 79 LIIIIAATVGILW 91 (255)
Q Consensus 79 lvlllgi~~~ily 91 (255)
-+++++++++++|
T Consensus 20 GLllL~li~~~Lw 32 (42)
T 2k1a_A 20 GLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455566666677
No 18
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=21.17 E-value=23 Score=21.50 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhheee
Q 045040 75 LLLILIIIIAATVGILW 91 (255)
Q Consensus 75 ~ll~lvlllgi~~~ily 91 (255)
+++++.+++|++..|+.
T Consensus 13 ~lII~~vmaGiIG~Ill 29 (40)
T 1afo_A 13 TLIIFGVMAGVIGTILL 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555544443
No 19
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=20.97 E-value=1.5e+02 Score=29.47 Aligned_cols=68 Identities=25% Similarity=0.401 Sum_probs=42.2
Q ss_pred eEeecCCCEEEEEEEEEeeeecCCCCeeeEEEEEEEEEecCCCeeEEEEecCeEEEEEECCeEeeccCCCceeecCCCeE
Q 045040 92 LAFKPKLPKISVDRMQVSQLNLSDNSSLEATFNVTITARNPNEKIGIYYEGGSRINVYYTDTKLCEGSLPKFYQGHKNTT 171 (255)
Q Consensus 92 lv~rPk~P~~~V~s~~v~~f~~~~~~~L~~~~~v~l~~~NPN~k~gi~Y~~~~~v~v~Y~g~~Lg~~~lp~F~Q~~~ntt 171 (255)
|.++|..|.. .+.++++ +.+.. .. +.|+++||+.. +....++.-+|..+....+|-+..+. +.
T Consensus 742 L~i~P~LP~~-w~~~~~~-~~~~g-----~~--~~I~v~~~~~~------~~~~~~~~~dg~~~~~~~i~~~~~~~--~~ 804 (811)
T 3qde_A 742 LKIDPCIPKA-WDGYKVT-RYFRG-----ST--YEITVKNPNHV------SKGVAKITVDGNEISGNILPVFNDGK--TH 804 (811)
T ss_dssp EEECCBCCTT-CCEEEEE-EEETT-----EE--EEEEEECTTCC------SBCEEEEEETTEECSSSBCCCCCSSC--EE
T ss_pred EEEeCcCCcc-cCcEEEE-EEECC-----EE--EEEEEEccCCC------CCCcEEEEECCEECcCCeeeecCCCC--EE
Confidence 5678888876 6677665 34432 22 45777899862 22345677899999777787544442 33
Q ss_pred EEEEE
Q 045040 172 VLNIP 176 (255)
Q Consensus 172 ~v~v~ 176 (255)
.|.+.
T Consensus 805 ~v~v~ 809 (811)
T 3qde_A 805 KVEVI 809 (811)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44444
No 20
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=20.16 E-value=22 Score=19.05 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=9.9
Q ss_pred EEEecCCCeeEEEE
Q 045040 127 ITARNPNEKIGIYY 140 (255)
Q Consensus 127 l~~~NPN~k~gi~Y 140 (255)
+-.+|||.|..-++
T Consensus 6 fllrnpndkyepfw 19 (26)
T 1nrp_R 6 FLLRNPNDKYEPFW 19 (26)
T ss_pred hhhcCCCcccCccc
Confidence 45689999865554
Done!