BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045042
         (111 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UCU|A Chain A, R-type Straight Flagellar Filament Made Of Full-length
           Flagellin
          Length = 494

 Score = 30.4 bits (67), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 14  GGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRM---PRQSHDASL 61
           G D + E+VS+ GK++ ++   G+   A  DL +        P Q  DA+L
Sbjct: 365 GADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAAL 415


>pdb|1IO1|A Chain A, Crystal Structure Of F41 Fragment Of Flagellin
          Length = 398

 Score = 30.4 bits (67), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 14  GGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRM---PRQSHDASL 61
           G D + E+VS+ GK++ ++   G+   A  DL +        P Q  DA+L
Sbjct: 313 GADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAAL 363


>pdb|3A5X|A Chain A, L-Type Straight Flagellar Filament Made Of Full-Length
           Flagellin
          Length = 494

 Score = 30.4 bits (67), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 14  GGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRM---PRQSHDASL 61
           G D + E+VS+ GK++ ++   G+   A  DL +        P Q  DA+L
Sbjct: 365 GADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAAL 415


>pdb|3LOY|A Chain A, Crystal Structure Of A Copper-Containing Benzylamine
           Oxidase From Hansenula Polymorpha
 pdb|3LOY|B Chain B, Crystal Structure Of A Copper-Containing Benzylamine
           Oxidase From Hansenula Polymorpha
 pdb|3LOY|C Chain C, Crystal Structure Of A Copper-Containing Benzylamine
           Oxidase From Hansenula Polymorpha
          Length = 633

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 39  IYATHDLPQIP-----PRMPRQSHDASLKPWGFTD 68
           ++AT     IP     P MP ++H+ +L P+GF D
Sbjct: 588 VWATLGFTHIPRVEDFPVMPVEAHEIALVPFGFFD 622


>pdb|3G9D|A Chain A, Crystal Structure Glycohydrolase
 pdb|3G9D|B Chain B, Crystal Structure Glycohydrolase
 pdb|3O5T|A Chain A, Structure Of Drag-Glnz Complex With Adp
          Length = 297

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 19  LEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRMPRQ 55
           +E V+  G + T+ A+ G    AT+ +  IPPR  R+
Sbjct: 235 VETVNQGGDADTTGAIAGMLAGATYGVETIPPRWLRK 271


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,711,297
Number of Sequences: 62578
Number of extensions: 139482
Number of successful extensions: 287
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 5
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)