BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045042
         (111 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7TKW4|SLA1_VANPO Actin cytoskeleton-regulatory complex protein SLA1
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=SLA1 PE=3 SV=1
          Length = 1202

 Score = 32.3 bits (72), Expect = 0.99,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 25  SGKSFTSAAVGGNQIYATHDLPQIPPRMPRQSH 57
           S K+   A+  GN+ YA  DLP +PP  P +S+
Sbjct: 180 SSKTNAQASDSGNRDYADKDLPDLPPNKPSRSN 212


>sp|A2IDD5|CCD78_HUMAN Coiled-coil domain-containing protein 78 OS=Homo sapiens
          GN=CCDC78 PE=2 SV=1
          Length = 438

 Score = 30.4 bits (67), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 8  SGQRPYGGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRM 52
          +G RP    RR+E V +  K +   A GG  ++AT    ++PP +
Sbjct: 7  TGPRPGPPSRRVENVVLRAKDWLPGAPGGTAVWATSLEAEVPPDL 51


>sp|P06179|FLIC_SALTY Flagellin OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
           700720) GN=fliC PE=1 SV=4
          Length = 495

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 14  GGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRM---PRQSHDASL 61
           G D + E+VS+ GK++ ++   G+   A  DL +        P Q  DA+L
Sbjct: 366 GADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAAL 416


>sp|P06175|FLIC_SALRU Flagellin OS=Salmonella rubislaw GN=fliC PE=3 SV=2
          Length = 493

 Score = 30.4 bits (67), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 14  GGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRM---PRQSHDASL 61
           G D + E+VS+ GK++ ++   G+   A  DL +        P Q  DA+L
Sbjct: 364 GADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPLQKIDAAL 414


>sp|Q7ZT42|SND1_DANRE Staphylococcal nuclease domain-containing protein 1 OS=Danio rerio
           GN=snd1 PE=2 SV=1
          Length = 897

 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 56  SHDASLKPWGFTDPEMKRRKRIAKYKVYTVEGKVKASLRKGLRWIKNKCS 105
           + D   +PW F   E  R+K I K   +TVE K       G+ ++    S
Sbjct: 70  TKDTPDEPWAFQAREFMRKKVIGKEVCFTVENKTPQGREYGMVYLGKDTS 119


>sp|Q8Y2D9|LOLB_RALSO Outer-membrane lipoprotein LolB OS=Ralstonia solanacearum (strain
           GMI1000) GN=lolB PE=3 SV=1
          Length = 209

 Score = 29.6 bits (65), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 11  RPYGGDRRLEIVSVSGKSFTSAAVGGNQIYATHDLPQIPPRMPRQSHDASLKPWGFTDP 69
           R  G D +LE++S  G++   A V  N+  AT +LP  PPR   +         GF+ P
Sbjct: 71  RERGADVQLELMSPLGQTL--AIVSQNRQGATLELPNQPPRRAAEVDTLMQDALGFSLP 127


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,174,706
Number of Sequences: 539616
Number of extensions: 1764494
Number of successful extensions: 3620
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3617
Number of HSP's gapped (non-prelim): 9
length of query: 111
length of database: 191,569,459
effective HSP length: 79
effective length of query: 32
effective length of database: 148,939,795
effective search space: 4766073440
effective search space used: 4766073440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)