Query 045042
Match_columns 111
No_of_seqs 90 out of 92
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 16:16:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cqt_I POU domain, class 2, as 20.2 56 0.0019 20.1 1.9 12 66-77 24-37 (44)
2 1dul_A Signal recognition part 17.0 38 0.0013 21.8 0.6 8 72-79 36-43 (69)
3 3c01_A Surface presentation of 14.3 67 0.0023 19.5 1.2 12 66-77 14-25 (48)
4 1mfq_C SRP54, signal recogniti 13.4 61 0.0021 23.1 0.9 11 69-79 81-96 (129)
5 1k4u_P Phagocyte NADPH oxidase 13.0 95 0.0033 17.9 1.5 11 44-54 3-13 (32)
6 1ifp_A PF3 inovirus, major coa 12.8 41 0.0014 20.6 -0.1 14 91-104 30-43 (44)
7 1hq1_A Signal recognition part 12.5 59 0.002 22.3 0.6 8 72-79 70-77 (105)
8 3gk6_A Integron cassette prote 11.3 96 0.0033 21.1 1.4 25 78-102 113-137 (170)
9 3bzy_A ESCU; auto cleavage pro 10.9 98 0.0034 19.3 1.2 12 66-77 20-31 (54)
10 3qrx_B Melittin; calcium-bindi 10.4 50 0.0017 18.4 -0.2 9 96-104 16-24 (26)
No 1
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=20.17 E-value=56 Score=20.12 Aligned_cols=12 Identities=50% Similarity=0.767 Sum_probs=7.9
Q ss_pred CCCH--HHHhhhhh
Q 045042 66 FTDP--EMKRRKRI 77 (111)
Q Consensus 66 ~~Dp--E~kRkkRV 77 (111)
..|| |+-||||=
T Consensus 24 VkePVKELLrRKRG 37 (44)
T 1cqt_I 24 VKEPVKELLRRKRG 37 (44)
T ss_dssp CSSCHHHHHHHTTC
T ss_pred cccHHHHHHHHhhc
Confidence 3554 88888773
No 2
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=17.02 E-value=38 Score=21.80 Aligned_cols=8 Identities=50% Similarity=0.870 Sum_probs=6.8
Q ss_pred Hhhhhhhe
Q 045042 72 KRRKRIAK 79 (111)
Q Consensus 72 kRkkRVA~ 79 (111)
.||+|||.
T Consensus 36 SR~~RIA~ 43 (69)
T 1dul_A 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 69999984
No 3
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=14.33 E-value=67 Score=19.54 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=9.1
Q ss_pred CCCHHHHhhhhh
Q 045042 66 FTDPEMKRRKRI 77 (111)
Q Consensus 66 ~~DpE~kRkkRV 77 (111)
-+|||+|-++|=
T Consensus 14 EGdP~iK~~~R~ 25 (48)
T 3c01_A 14 EGNPEVKSKRRE 25 (48)
T ss_pred cCCHHHHHHHHH
Confidence 379999977663
No 4
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=13.38 E-value=61 Score=23.14 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=9.2
Q ss_pred HHHH-----hhhhhhe
Q 045042 69 PEMK-----RRKRIAK 79 (111)
Q Consensus 69 pE~k-----RkkRVA~ 79 (111)
|++= ||+|||.
T Consensus 81 P~ii~~~~SRk~RIA~ 96 (129)
T 1mfq_C 81 AKVFSKQPGRIQRVAR 96 (129)
T ss_dssp HHHHHHCTHHHHHHHH
T ss_pred cccccCChHHHHHHHc
Confidence 8875 9999985
No 5
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=13.00 E-value=95 Score=17.95 Aligned_cols=11 Identities=36% Similarity=0.772 Sum_probs=7.5
Q ss_pred cCCCCCCCCCC
Q 045042 44 DLPQIPPRMPR 54 (111)
Q Consensus 44 ~~p~~~p~p~~ 54 (111)
+.|.+||+|+.
T Consensus 3 ~~P~vPpRPs~ 13 (32)
T 1k4u_P 3 PQPAVPPRPSA 13 (32)
T ss_dssp CCCCCCCCCCH
T ss_pred CCCCCCCCCCH
Confidence 46777877754
No 6
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=12.83 E-value=41 Score=20.55 Aligned_cols=14 Identities=43% Similarity=0.883 Sum_probs=10.1
Q ss_pred hhhhccchhhcccc
Q 045042 91 ASLRKGLRWIKNKC 104 (111)
Q Consensus 91 ~S~R~sfrWiK~k~ 104 (111)
+.+--++||||..+
T Consensus 30 aavvlgirwikaqf 43 (44)
T 1ifp_A 30 AAVVLGIRWIKAQF 43 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhHhhc
Confidence 44556899999764
No 7
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=12.49 E-value=59 Score=22.29 Aligned_cols=8 Identities=50% Similarity=0.870 Sum_probs=6.8
Q ss_pred Hhhhhhhe
Q 045042 72 KRRKRIAK 79 (111)
Q Consensus 72 kRkkRVA~ 79 (111)
.||+|||.
T Consensus 70 SR~~RIA~ 77 (105)
T 1hq1_A 70 SRKRRIAA 77 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 69999984
No 8
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=11.33 E-value=96 Score=21.11 Aligned_cols=25 Identities=16% Similarity=0.245 Sum_probs=20.0
Q ss_pred heeeeeeeechhhhhhhccchhhcc
Q 045042 78 AKYKVYTVEGKVKASLRKGLRWIKN 102 (111)
Q Consensus 78 A~YK~YavEGKvK~S~R~sfrWiK~ 102 (111)
..|-||..+|.+-.+|.+.++||=.
T Consensus 113 g~YAVF~~~G~~p~~i~~~w~~I~~ 137 (170)
T 3gk6_A 113 GKYVTFSATGEMPQVVIDLWNEVWN 137 (170)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHH
Confidence 4699999999987788888777643
No 9
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=10.86 E-value=98 Score=19.27 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=9.0
Q ss_pred CCCHHHHhhhhh
Q 045042 66 FTDPEMKRRKRI 77 (111)
Q Consensus 66 ~~DpE~kRkkRV 77 (111)
-+|||+|-++|=
T Consensus 20 EGdP~iK~r~R~ 31 (54)
T 3bzy_A 20 DGNPEIKGERRR 31 (54)
T ss_pred cCCHHHHHHHHH
Confidence 379999977663
No 10
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=10.45 E-value=50 Score=18.37 Aligned_cols=9 Identities=44% Similarity=0.774 Sum_probs=6.6
Q ss_pred cchhhcccc
Q 045042 96 GLRWIKNKC 104 (111)
Q Consensus 96 sfrWiK~k~ 104 (111)
-+.|||+|-
T Consensus 16 liSWiK~kr 24 (26)
T 3qrx_B 16 LISWIKRKR 24 (26)
T ss_pred HHHHHHHHh
Confidence 357999874
Done!