Query 045042
Match_columns 111
No_of_seqs 90 out of 92
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 16:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045042.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045042hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmwa2 b.1.1.4 (A:113-178) CD 19.6 8.5 0.00062 23.7 -0.5 23 81-103 3-25 (66)
2 d1p3da2 c.59.1.1 (A:322-473) U 15.3 22 0.0016 21.1 0.7 9 14-22 1-9 (152)
3 d1zs4a1 a.35.1.9 (A:4-81) Regu 12.9 25 0.0018 22.3 0.5 18 63-80 56-74 (78)
4 d1j6ua2 c.59.1.1 (A:296-446) U 12.6 32 0.0023 21.3 1.0 9 14-22 1-9 (151)
5 d1wp1a_ f.5.1.1 (A:) Outer mem 10.3 62 0.0045 22.4 2.0 13 61-73 37-51 (456)
6 d1hd7a_ d.151.1.1 (A:) DNA rep 8.6 40 0.0029 20.9 0.3 25 76-104 20-45 (275)
7 d1dula_ a.36.1.1 (A:) Signal s 7.9 43 0.0031 20.2 0.2 8 72-79 36-43 (69)
8 d1p8ja1 b.18.1.20 (A:443-578) 7.6 70 0.0051 20.4 1.2 16 13-28 55-70 (136)
9 d2adza1 b.55.1.1 (A:1-43,A:117 7.4 94 0.0069 20.3 1.8 13 16-28 68-80 (105)
10 d1qb2a_ a.36.1.1 (A:) SRP54M { 7.0 50 0.0036 20.7 0.2 7 73-79 77-83 (107)
No 1
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}
Probab=19.63 E-value=8.5 Score=23.71 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.9
Q ss_pred eeeeeechhhhhhhccchhhccc
Q 045042 81 KVYTVEGKVKASLRKGLRWIKNK 103 (111)
Q Consensus 81 K~YavEGKvK~S~R~sfrWiK~k 103 (111)
+|+..|+||--+--.++.|+|+.
T Consensus 3 ~v~e~edkV~L~Cn~sI~w~k~~ 25 (66)
T d1xmwa2 3 EVLEAEDKVILKCNSSITLLQGT 25 (66)
T ss_dssp EEEEETTEEEEECSSSCEEEEEC
T ss_pred ceEecCceEEEEccCeEEEccCc
Confidence 68899999988778899999985
No 2
>d1p3da2 c.59.1.1 (A:322-473) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}
Probab=15.34 E-value=22 Score=21.11 Aligned_cols=9 Identities=33% Similarity=0.785 Sum_probs=7.4
Q ss_pred CCCceeEEe
Q 045042 14 GGDRRLEIV 22 (111)
Q Consensus 14 ~~drr~eiV 22 (111)
|+.||+|++
T Consensus 1 Gv~RRfe~~ 9 (152)
T d1p3da2 1 GAGRRFDQL 9 (152)
T ss_dssp CBTTSSEEE
T ss_pred CCCcceEEe
Confidence 678899987
No 3
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=12.94 E-value=25 Score=22.28 Aligned_cols=18 Identities=33% Similarity=0.780 Sum_probs=14.8
Q ss_pred CCCCCCHHHHhh-hhhhee
Q 045042 63 PWGFTDPEMKRR-KRIAKY 80 (111)
Q Consensus 63 ~W~~~DpE~kRk-kRVA~Y 80 (111)
-|+..|.||-|- ||||.|
T Consensus 56 E~GV~D~ema~Lak~vA~~ 74 (78)
T d1zs4a1 56 EWGVVDDDMARLARQVAAI 74 (78)
T ss_dssp TTCCCHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHH
Confidence 488999999886 788865
No 4
>d1j6ua2 c.59.1.1 (A:296-446) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}
Probab=12.61 E-value=32 Score=21.32 Aligned_cols=9 Identities=44% Similarity=0.719 Sum_probs=7.1
Q ss_pred CCCceeEEe
Q 045042 14 GGDRRLEIV 22 (111)
Q Consensus 14 ~~drr~eiV 22 (111)
|+.||+|++
T Consensus 1 Gv~rR~e~i 9 (151)
T d1j6ua2 1 GVHRRFSIA 9 (151)
T ss_dssp CCTTSSEEE
T ss_pred CCCCCeEEE
Confidence 677888886
No 5
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.28 E-value=62 Score=22.41 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=8.9
Q ss_pred CCCCC--CCCHHHHh
Q 045042 61 LKPWG--FTDPEMKR 73 (111)
Q Consensus 61 s~~W~--~~DpE~kR 73 (111)
...|+ |+||+++.
T Consensus 37 ~~~w~~~~~d~tL~~ 51 (456)
T d1wp1a_ 37 DIGWREFFRDPQLQQ 51 (456)
T ss_dssp GSCHHHHBCCHHHHH
T ss_pred chhHHHhcCCHHHHH
Confidence 34565 89998764
No 6
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.64 E-value=40 Score=20.87 Aligned_cols=25 Identities=32% Similarity=0.838 Sum_probs=14.7
Q ss_pred hhheeeeeeeechhhhhhhcc-chhhcccc
Q 045042 76 RIAKYKVYTVEGKVKASLRKG-LRWIKNKC 104 (111)
Q Consensus 76 RVA~YK~YavEGKvK~S~R~s-frWiK~k~ 104 (111)
||++|++ .| +++.+++. +.||++.=
T Consensus 20 ki~S~Nv---nG-lr~~~~~~~~~~i~~~~ 45 (275)
T d1hd7a_ 20 KICSWNV---DG-LRAWIKKKGLDWVKEEA 45 (275)
T ss_dssp EEEEEEC---SS-HHHHHHTTHHHHHHHHC
T ss_pred EEEEEEe---cc-HHhhhhccHHHHHHhCC
Confidence 7888888 33 23333333 57887653
No 7
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=7.88 E-value=43 Score=20.16 Aligned_cols=8 Identities=50% Similarity=0.870 Sum_probs=6.6
Q ss_pred Hhhhhhhe
Q 045042 72 KRRKRIAK 79 (111)
Q Consensus 72 kRkkRVA~ 79 (111)
-|++|||.
T Consensus 36 SR~~RIA~ 43 (69)
T d1dula_ 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHc
Confidence 59999985
No 8
>d1p8ja1 b.18.1.20 (A:443-578) Furin, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.55 E-value=70 Score=20.36 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=12.7
Q ss_pred CCCCceeEEeecCCCc
Q 045042 13 YGGDRRLEIVSVSGKS 28 (111)
Q Consensus 13 y~~drr~eiVs~~gk~ 28 (111)
|=+|=+|+++||+|..
T Consensus 55 ~~GDL~I~L~SPsGT~ 70 (136)
T d1p8ja1 55 RRGDLAIHLISPMGTR 70 (136)
T ss_dssp CGGGEEEEEECTTCCE
T ss_pred CCCcEEEEEECCCCCE
Confidence 4568899999999943
No 9
>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.39 E-value=94 Score=20.31 Aligned_cols=13 Identities=38% Similarity=0.618 Sum_probs=11.5
Q ss_pred CceeEEeecCCCc
Q 045042 16 DRRLEIVSVSGKS 28 (111)
Q Consensus 16 drr~eiVs~~gk~ 28 (111)
+|-+||-||+|+.
T Consensus 68 nR~lElhSpDG~~ 80 (105)
T d2adza1 68 PRYLEICAADGQD 80 (105)
T ss_dssp SCEEEEEETTTTE
T ss_pred ccEEEEECCCCCc
Confidence 6789999999976
No 10
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.04 E-value=50 Score=20.73 Aligned_cols=7 Identities=43% Similarity=0.795 Sum_probs=6.2
Q ss_pred hhhhhhe
Q 045042 73 RRKRIAK 79 (111)
Q Consensus 73 RkkRVA~ 79 (111)
|++|||.
T Consensus 77 R~~RIA~ 83 (107)
T d1qb2a_ 77 RIQRVAR 83 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999985
Done!