BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045043
(490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 525 bits (1352), Expect = e-149, Method: Compositional matrix adjust.
Identities = 273/524 (52%), Positives = 352/524 (67%), Gaps = 61/524 (11%)
Query: 3 YQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQGYD 62
Y+ +AK+LE EV+ INNE E L +LELID+VQRLGLGYRFE++I+RAL R +S G+D
Sbjct: 42 YKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFD 101
Query: 63 ---------------------------------HPEGNFTETVHKDVKGVLSLNEASYLA 89
GNF E + +D K +LSL EAS+LA
Sbjct: 102 GVTKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLA 161
Query: 90 FEGEDILNEALTFSRTHLNQL-KTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRK 148
EGE+IL+EA F+ +HL +L + K+ ++E V+H+LELP H R +RLE W EAYRK
Sbjct: 162 LEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRK 221
Query: 149 K-DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGM 207
K DAN +LLE A LD+N +QS YQ +++ +RWW + LA L FARDRL+E F W+VG+
Sbjct: 222 KEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGV 281
Query: 208 VPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKL 267
+PQYS+CR ++ K+ +FVTIID IY VYGTLDELELFT AVERWD+NA+NDLP+YMKL
Sbjct: 282 AFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKL 341
Query: 268 SFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSF 327
FLALYNTIN E+AYD LK GE I+PYLTKAWADLC +F
Sbjct: 342 CFLALYNTIN---------------------EIAYDNLKDKGENILPYLTKAWADLCNAF 380
Query: 328 LQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRW 387
LQEAKW YN+ TPTF++Y NAW+SSSG L L+ +YF V ++I K+ +E+L KYH++I
Sbjct: 381 LQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISR 440
Query: 388 PSTIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443
PS IFRL NDLA++ G+TA+S+ CYM G+SEE+A + + N+ID WKKMNKE
Sbjct: 441 PSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEK 500
Query: 444 VNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVV 487
+ F +PFVETA NLAR + CTY GD H +PD +KRV+
Sbjct: 501 LGGS-LFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVL 543
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 353 bits (905), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 198/521 (38%), Positives = 291/521 (55%), Gaps = 66/521 (12%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
DK+ RA EL VK + E ++ LELIDD+QR+GL F+NE K L
Sbjct: 27 DKHVIRASELVTLVKMELEKETDQIRQ-LELIDDLQRMGLSDHFQNEFKEILSSIYLDHH 85
Query: 54 --------------------RILSWQGYD----------HPEGNFTETVHKDVKGVLSLN 83
R+L G+ + EG F E++ D +G+L L
Sbjct: 86 YYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLY 145
Query: 84 EASYLAFEGEDILNEALTFSRTHLNQL--KTKLNPYMSELVSHSLELPRHYRMRRLEVRW 141
EAS+L EGE L A F+ L + + ++ + +++SL++P H+R++R
Sbjct: 146 EASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPV 205
Query: 142 YTEAYRKK-DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMEC 200
+ E YRK+ D N ++LE A LD N VQ+ +QEE+K RWW + + L FARDRL+EC
Sbjct: 206 WIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVEC 265
Query: 201 FIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVND 260
+ W+ G++ Q+++ R + KV A +T+ID IY VYGTL+ELE FT + RWDIN+++
Sbjct: 266 YFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQ 325
Query: 261 LPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAW 320
LP+YM+L FLAL N V++ +YD++K+ G +IPYL ++W
Sbjct: 326 LPDYMQLCFLALNN---------------------FVDDTSYDVMKEKGVNVIPYLRQSW 364
Query: 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGK 380
DL ++ EA+W Y + P+ EEYLEN+W+S SG L H +F V+ S K+ ++SL K
Sbjct: 365 VDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYK 424
Query: 381 YHNLIRWPSTIFRLSNDLATS----KIGKTASSILCYMHETGLSEEIARQHLRNMIDSCW 436
YH+L+RW S + RL++DL TS G S+ CYM + SE AR+H++ +I W
Sbjct: 425 YHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVW 484
Query: 437 KKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGA 477
KKMN E V+ PF + F+ A +L R+AQ Y GD HG
Sbjct: 485 KKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGT 525
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 330 bits (847), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 193/511 (37%), Positives = 291/511 (56%), Gaps = 66/511 (12%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+K+ RA + ++VK M+ E + + LELIDD++RLG+ FE EI L+
Sbjct: 60 EKHLMRAAGMIDQVKMMLQEEV-DSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNN 118
Query: 54 --------------RILS----------WQGYDHPEG-NFTETVHKDVKGVLSLNEASYL 88
R+L + + + +G +F ++ D +G+L L EAS+L
Sbjct: 119 EIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFL 178
Query: 89 AFEGEDILNEALTFSRTHLNQ---LKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEA 145
+ +GE+ L A F+ L + + +N S + +LELP H+R++ R + +A
Sbjct: 179 SAQGEETLRLARDFATKFLQKRVLVDKDINLLSS--IERALELPTHWRVQMPNARSFIDA 236
Query: 146 Y-RKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWS 204
Y R+ D N +LE AKLDFN VQ+ +Q+E+K +RWW L L F RDR++EC+ W+
Sbjct: 237 YKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWT 296
Query: 205 VGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNY 264
G+V + Q+ R LTK+ A VT ID ++ +YGTL+EL+LFT A++RWDI ++ LP Y
Sbjct: 297 TGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPY 356
Query: 265 MKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLC 324
M++ +LAL+N +N EMAYD L+ G PYL K W L
Sbjct: 357 MQICYLALFNFVN---------------------EMAYDTLRDKGFDSTPYLRKVWVGLI 395
Query: 325 KSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNL 384
+S+L EAKW Y + P+ EEY++N+W S G L H +F ++ SI ++A ES+ KYH++
Sbjct: 396 ESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDI 455
Query: 385 IRWPSTIFRLSNDLATS----KIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440
+R TI RL++D+ TS + G S+ CYM+E SEE AR+H+R++ID WK MN
Sbjct: 456 VRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMN 515
Query: 441 KEWVNDQHPFVEPFVETAFNLARIAQCTYQY 471
KE + F + FVE + NLAR+AQ YQ+
Sbjct: 516 KEMMTS--SFSKYFVEVSANLARMAQWIYQH 544
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 177/534 (33%), Positives = 282/534 (52%), Gaps = 70/534 (13%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRAL-------- 52
+++ R EL +V+ ++ E E + LELI D++ LGL F++EIK L
Sbjct: 31 ERHLDRKAELIVQVRILLK-EKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHK 89
Query: 53 ------------------HRILSWQGYDHPEG-----------NFTETVHKDVKGVLSLN 83
R+L G++ + +F ++ +D KG+L L
Sbjct: 90 CFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLY 149
Query: 84 EASYLAFEGEDILNEALTFS----RTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEV 139
EAS+L +GED L A F+ + L++ +++ + + HSL+LP H+R++ +E
Sbjct: 150 EASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEA 209
Query: 140 RWYTEAY-RKKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLM 198
RW+ +AY R+ D N ++ E AKL+FN +Q+++Q+E+K+L+RWW + + L F RDRL+
Sbjct: 210 RWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLV 269
Query: 199 ECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAV 258
E F W+VGM Q+ R+ + T+ID IY VYGTLDELELFT +RWD ++
Sbjct: 270 ESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESI 329
Query: 259 NDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTK 318
LP YM+L + ++N I++ AY DILK+HG + YL K
Sbjct: 330 TRLPYYMQLCYWGVHNYISDAAY---------------------DILKEHGFFCLQYLRK 368
Query: 319 AWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKA-LES 377
+ DL +++ EAKW ++ YTP+ +EYL A S + + +YF + + + A ++S
Sbjct: 369 SVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDS 428
Query: 378 LGKYHNLIRWPSTIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMID 433
L +YH+++ I RL +DL TS G +I CYM ET SEE A +H++ +I
Sbjct: 429 LYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIR 488
Query: 434 SCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVV 487
WK MN + +PF + V A N+ R+AQ Y +GD G + + +
Sbjct: 489 EAWKDMNTA-IAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIA 541
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 261 bits (666), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 167/522 (31%), Positives = 264/522 (50%), Gaps = 60/522 (11%)
Query: 4 QRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH---------- 53
++R ++L+EEV+ MI L ID VQRLG+ Y F EI+ L
Sbjct: 49 EKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAE 108
Query: 54 ----------RILSWQGYD----------HPEGNFTETVHKDVKGVLSLNEASYLAFEGE 93
R+L GY+ +GNF +V DV+G+L L +ASYL GE
Sbjct: 109 NDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGE 168
Query: 94 DILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYRKKDA-N 152
DIL+EA++F+ HL+ L+ +SE VSH+L+ + R+E R Y Y+ ++ N
Sbjct: 169 DILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHN 228
Query: 153 CMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQ 212
LLEFAK+DFN +Q +++E+ + RWW+D+D + L +ARDR++E + W G+ +PQ
Sbjct: 229 KALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQ 288
Query: 213 YSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLAL 272
YS R+ LTKV A +I+D Y Y T +EL +T A+ERWDI ++++P YMK S+ AL
Sbjct: 289 YSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKAL 348
Query: 273 YNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHG-EIIIPYLTKAWADLCKSFLQEA 331
+ EM ++ +HG + + Y A L +S+L EA
Sbjct: 349 LDVYEEMV----------------------QLVAEHGRQYRVEYAKNAMIRLAQSYLVEA 386
Query: 332 KWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTI 391
KW+ Y P+FEE+ NA + + + S+ + + + + +I+ + I
Sbjct: 387 KWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTII 446
Query: 392 FRLSNDLATSKIG----KTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQ 447
R +D+A K S+I CYM E G++ + A ++S WK +N+E++
Sbjct: 447 CRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPT 506
Query: 448 HPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS 489
E + + NLAR+ Y+ GD + G+A K + S
Sbjct: 507 EMPTE-VLNRSLNLARVMDVLYREGDGYTYV-GKAAKGGITS 546
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 251 bits (640), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 269/523 (51%), Gaps = 59/523 (11%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+KY + + L+E+ + M+ ++ L LID ++RLG+ Y FE EI L
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 99
Query: 54 ------------RILSWQGYD-HPE---------GNFTETVHKDVKGVLSLNEASYLAFE 91
R+L G++ PE G F E++ DV G+L+L EAS++
Sbjct: 100 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 159
Query: 92 GEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY--RKK 149
+DIL +AL FS HL L + E V+H+LE H + R+E R++ + +++
Sbjct: 160 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 219
Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
N +LL FAKLDFN +Q +++E+ ++RWW+D+D L +ARDR++EC+ W++G+
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYF 279
Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
+PQYS R L K + ++I+D + YGT+ ELE +T A++RWDIN ++ LP+YMK+S+
Sbjct: 280 EPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISY 339
Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
A+ + LY + + H I+ + + ++ +++
Sbjct: 340 KAILD------------------LYKDYEKELSSAGRSH---IVCHAIERMKEVVRNYNV 378
Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
E+ W YTP EYL NA +++ SY L +S ++ E L K ++
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASV 437
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
I+R+ +D AT ++ G+ A+ I C M + G+S + A +NM ++ WK +N E +
Sbjct: 438 IIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLL 496
Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVV 487
P F+ NLARI + TY + D + P+ K ++
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHII 539
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 268/523 (51%), Gaps = 59/523 (11%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+KY + + L+E+ + M+ ++ L LID ++RLG+ Y FE EI L
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 99
Query: 54 ------------RILSWQGYD-HPE---------GNFTETVHKDVKGVLSLNEASYLAFE 91
R+L G++ PE G F E++ DV G+L+L EAS++
Sbjct: 100 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 159
Query: 92 GEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY--RKK 149
+DIL +AL FS HL L + E V+H+LE H + R+E R++ + +++
Sbjct: 160 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 219
Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
N +LL FAKLDFN +Q +++E+ ++RWW+D+D L +ARDR++EC+ W++G+
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYF 279
Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
+PQYS R L K + ++I+D + YGT+ ELE +T A++RWDIN ++ LP+YMK+S+
Sbjct: 280 EPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISY 339
Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
A+ + LY + + H I+ + + ++ +++
Sbjct: 340 KAILD------------------LYKDYEKELSSAGRSH---IVCHAIERMKEVVRNYNV 378
Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
E+ W YTP EYL NA +++ SY L +S ++ E L K ++
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASV 437
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
I R+ +D AT ++ G+ A+ I C M + G+S + A +NM ++ WK +N E +
Sbjct: 438 IICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLL 496
Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVV 487
P F+ NLARI + TY + D + P+ K ++
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHII 539
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 268/523 (51%), Gaps = 59/523 (11%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+KY + + L+E+ + M+ ++ L LID ++RLG+ Y FE EI L
Sbjct: 42 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 101
Query: 54 ------------RILSWQGYD-HPE---------GNFTETVHKDVKGVLSLNEASYLAFE 91
R+L G++ PE G F E++ DV G+L+L EAS++
Sbjct: 102 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 161
Query: 92 GEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY--RKK 149
+DIL +AL FS HL L + E V+H+LE H + R+E R++ + +++
Sbjct: 162 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 221
Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
N +LL FAKLDFN +Q +++E+ ++RWW+D+D L +ARDR++EC+ W++G+
Sbjct: 222 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYF 281
Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
+PQYS R L K + ++I+D + YGT+ ELE +T A++RWDIN ++ LP+YMK+S+
Sbjct: 282 EPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISY 341
Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
A+ + LY + + H I+ + + ++ +++
Sbjct: 342 KAILD------------------LYKDYEKELSSAGRSH---IVCHAIERMKEVVRNYNV 380
Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
E+ W YTP EYL NA +++ SY L +S ++ E L K ++
Sbjct: 381 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASV 439
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
I R+ +D AT ++ G+ A+ I C M + G+S + A +NM ++ WK +N E +
Sbjct: 440 IICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLL 498
Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVV 487
P F+ NLARI + TY + D + P+ K ++
Sbjct: 499 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHII 541
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 250 bits (639), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 161/523 (30%), Positives = 269/523 (51%), Gaps = 59/523 (11%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+KY + + L+E+ + M+ ++ L LID ++RLG+ Y FE EI L
Sbjct: 42 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 101
Query: 54 ------------RILSWQGYD-HPE---------GNFTETVHKDVKGVLSLNEASYLAFE 91
R+L G++ PE G F E++ DV G+L+L EAS++
Sbjct: 102 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 161
Query: 92 GEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY--RKK 149
+DIL +AL FS HL L + E V+H+LE H + R+E R++ + +++
Sbjct: 162 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 221
Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
N +LL FAKLDFN +Q +++E+ ++RWW+D+D L +ARDR++EC+ W++G+
Sbjct: 222 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYF 281
Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
+PQYS R L K + ++I+D + YGT+ ELE +T A++RWDIN ++ LP+YMK+S+
Sbjct: 282 EPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISY 341
Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
A+ + LY + + H I+ + + ++ +++
Sbjct: 342 KAILD------------------LYKDYEKELSSAGRSH---IVCHAIERMKEIVRNYNV 380
Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
E+ W YTP EYL NA +++ L SY L +S ++ E L K ++
Sbjct: 381 ESTWFIEGYTPPVSEYLSNALATTTYYLLATTSY-LGMKSATEQDFEWLSKNPKILEASV 439
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
I R+ +D AT ++ G+ A+ I C M + G+S + A +NM ++ WK +N E +
Sbjct: 440 IICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLL 498
Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVV 487
P F+ NLARI + TY + D + P+ K ++
Sbjct: 499 RPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHII 541
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 250 bits (638), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 268/523 (51%), Gaps = 59/523 (11%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+KY + + L+E+ + M+ ++ L LID ++RLG+ Y FE EI L
Sbjct: 27 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 86
Query: 54 ------------RILSWQGYD-HPE---------GNFTETVHKDVKGVLSLNEASYLAFE 91
R+L G++ PE G F E++ DV G+L+L EAS++
Sbjct: 87 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 146
Query: 92 GEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY--RKK 149
+DIL +AL FS HL L + E V+H+LE H + R+E R++ + +++
Sbjct: 147 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 206
Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
N +LL FAKLDFN +Q +++E+ ++RWW+D+D L +ARDR++EC+ W++G+
Sbjct: 207 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYF 266
Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
+PQYS R L K + ++I+D + YGT+ ELE +T A++RWDIN ++ LP+YMK+S+
Sbjct: 267 EPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISY 326
Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
A+ + LY + + H I+ + + ++ +++
Sbjct: 327 KAILD------------------LYKDYEKELSSAGRSH---IVCHAIERMKEVVRNYNV 365
Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
E+ W YTP EYL NA +++ SY L +S ++ E L K ++
Sbjct: 366 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASV 424
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
I R+ +D AT ++ G+ A+ I C M + G+S + A +NM ++ WK +N E +
Sbjct: 425 IICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLL 483
Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVV 487
P F+ NLARI + TY + D + P+ K ++
Sbjct: 484 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHII 526
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 268/523 (51%), Gaps = 59/523 (11%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+KY + + L+E+ + M+ ++ L LID ++RLG+ Y FE EI L
Sbjct: 40 EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS 99
Query: 54 ------------RILSWQGYD-HPE---------GNFTETVHKDVKGVLSLNEASYLAFE 91
R+L G++ PE G F E++ DV G+L+L EAS++
Sbjct: 100 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 159
Query: 92 GEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY--RKK 149
+DIL +AL FS HL L + E V+H+LE H + R+E R++ + +++
Sbjct: 160 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 219
Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
N +LL FAKLDFN +Q +++E+ ++RWW+D+D L +ARDR++EC+ W++G+
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYF 279
Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
+PQYS R L K + ++I+D + YGT+ ELE +T A++RWDIN ++ LP+YMK+S+
Sbjct: 280 EPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISY 339
Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
A+ + LY + + H I+ + + ++ +++
Sbjct: 340 KAILD------------------LYKDYEKELSSAGRSH---IVCHAIERMKEVVRNYNV 378
Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
E+ W YTP EYL NA +++ SY L +S ++ E L K ++
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASV 437
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
I R+ +D AT ++ G+ A+ I C M + G+S + A +NM ++ WK +N E +
Sbjct: 438 IICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLL 496
Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVV 487
P F+ NLARI + TY + D + P+ K ++
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHII 539
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 249 bits (637), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 160/523 (30%), Positives = 268/523 (51%), Gaps = 59/523 (11%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+KY + + L+E+ + M+ ++ L LID ++RLG+ Y FE EI L
Sbjct: 40 EKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS 99
Query: 54 ------------RILSWQGYD-HPE---------GNFTETVHKDVKGVLSLNEASYLAFE 91
R+L G++ PE G F E++ DV G+L+L EAS++
Sbjct: 100 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 159
Query: 92 GEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY--RKK 149
+DIL +AL FS HL L + E V+H+LE H + R+E R++ + +++
Sbjct: 160 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 219
Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
N +LL FAKLDFN +Q +++E+ ++RWW+D+D L +ARDR++EC+ W++G+
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYF 279
Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
+PQYS R L K + ++I+D + YGT+ ELE +T A++RWDIN ++ LP+YMK+S+
Sbjct: 280 EPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISY 339
Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
A+ + LY + + H I+ + + ++ +++
Sbjct: 340 KAILD------------------LYKDYEKELSSAGRSH---IVCHAIERMKEVVRNYNV 378
Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
E+ W YTP EYL NA +++ SY L +S ++ E L K ++
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASV 437
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
I R+ +D AT ++ G+ A+ I C M + G+S + A +NM ++ WK +N E +
Sbjct: 438 IICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLL 496
Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVV 487
P F+ NLARI + TY + D + P+ K ++
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHII 539
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 246 bits (627), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 159/523 (30%), Positives = 268/523 (51%), Gaps = 59/523 (11%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+KY + + L+E+ + M+ ++ L LID ++RLG+ Y FE EI L
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 99
Query: 54 ------------RILSWQGYD-HPE---------GNFTETVHKDVKGVLSLNEASYLAFE 91
R+L G++ PE G F E++ DV G+L+L EAS++
Sbjct: 100 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 159
Query: 92 GEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY--RKK 149
+DIL +AL FS HL L + E V+H+LE H + R+E R++ + +++
Sbjct: 160 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 219
Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
N +LL FAKLDFN +Q +++E+ ++RWW+D+D L +ARDR++EC+ ++G+
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYF 279
Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
+PQYS R L K + ++I+D + YGT+ ELE +T A++RWDIN ++ LP+YMK+S+
Sbjct: 280 EPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISY 339
Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
A+ + LY + + H I+ + + ++ +++
Sbjct: 340 KAILD------------------LYKDYEKELSSAGRSH---IVCHAIERMKEVVRNYNV 378
Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
E+ W YTP EYL NA +++ SY L +S ++ E L K ++
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASV 437
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
I+R+ +D AT ++ G+ A+ I C M + G+S + A +NM ++ WK +N E +
Sbjct: 438 IIWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLL 496
Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVV 487
P F+ NLARI + TY + D + P+ K ++
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHII 539
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 245 bits (626), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 159/523 (30%), Positives = 267/523 (51%), Gaps = 59/523 (11%)
Query: 1 DKYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALH------- 53
+KY + + L+E+ + M+ ++ L LID ++RLG+ Y FE EI L
Sbjct: 40 EKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNS 99
Query: 54 ------------RILSWQGYD-HPE---------GNFTETVHKDVKGVLSLNEASYLAFE 91
R+L G++ PE G F E++ DV G+L+L EAS++
Sbjct: 100 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTH 159
Query: 92 GEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHYRMRRLEVRWYTEAY--RKK 149
+DIL +AL FS HL L + E V+H+LE H + R+E R++ + +++
Sbjct: 160 ADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ 219
Query: 150 DANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVP 209
N +LL FAKLDFN +Q +++E+ ++RWW+D+D L +ARDR++EC+ ++G+
Sbjct: 220 SKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSALGVYF 279
Query: 210 KPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSF 269
+PQYS R L K + ++I+D + YGT+ ELE +T A++RWDIN ++ LP+YMK+S+
Sbjct: 280 EPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISY 339
Query: 270 LALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQ 329
A+ + LY + + H I+ + + ++ +++
Sbjct: 340 KAILD------------------LYKDYEKELSSAGRSH---IVCHAIERMKEVVRNYNV 378
Query: 330 EAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPS 389
E+ W YTP EYL NA +++ SY L +S ++ E L K ++
Sbjct: 379 ESTWFIEGYTPPVSEYLSNALATTTYYYLATTSY-LGMKSATEQDFEWLSKNPKILEASV 437
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVN 445
I R+ +D AT ++ G+ A+ I C M + G+S + A +NM ++ WK +N E +
Sbjct: 438 IICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDIN-EGLL 496
Query: 446 DQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVV 487
P F+ NLARI + TY + D + P+ K ++
Sbjct: 497 RPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHII 539
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 146/510 (28%), Positives = 244/510 (47%), Gaps = 92/510 (18%)
Query: 32 IDDVQRLGLGYRFENEIKRALH-----------------------------RILSWQGYD 62
+D V+RLG+ F+ EIK AL RIL GY+
Sbjct: 277 VDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYN 336
Query: 63 ----------HPEGNFTETVHKDVKGV---LSLNEASYLAFEGEDILNEALTFSRTHLNQ 109
G F + + +GV L++N S+++F GE I+ EA + +L
Sbjct: 337 VSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRN 396
Query: 110 LKTKLNPY--------MSELVSHSLELPRHYRMRRLEVRWYTEAYRKKD----------- 150
++ + + V ++L+ P H M RLE R Y E Y D
Sbjct: 397 ALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWLGKTVYMMP 456
Query: 151 --ANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMV 208
+N LE AKLDFN+VQS +Q E+++L RWW+ +L F R+R+ E + +
Sbjct: 457 YISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGFT-DLNFTRERVTEIYFSPASFI 515
Query: 209 PKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLS 268
+P++S CR TK + F I+D +Y +G+LD+L+LFT +V+RWD++ V+ +P MK+
Sbjct: 516 FEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKIC 575
Query: 269 FLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFL 328
F+ YNT N++A + ++ G ++ Y+ W +++
Sbjct: 576 FVGFYNTF---------------------NDIAKEGRERQGRDVLGYIQNVWKVQLEAYT 614
Query: 329 QEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWP 388
+EA+WS +Y P+F EY+ENA S + ++ S + + L + + ++
Sbjct: 615 KEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLM 674
Query: 389 STIFRLSNDLATSKI----GKTASSILCYMHE-TGLSEEIARQHLRNMIDSCWKKMNKEW 443
RL ND T + G+ AS+I CYM + +SEE A QH+ +++++ +++N+E+
Sbjct: 675 GLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREF 734
Query: 444 VNDQHPFVEPFVETAFNLARIAQCTYQYGD 473
VN++ P + + F ARI Q Y GD
Sbjct: 735 VNNKIPDI--YKRLVFETARIMQLFYMQGD 762
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 211 bits (538), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 161/523 (30%), Positives = 258/523 (49%), Gaps = 68/523 (13%)
Query: 3 YQRRAKELEEEVKFMIN--NENGEMLPILELIDDVQRLGLGYRFENEIKRALHRI----L 56
Y+ KE++E + ++ NE G L I D++ LG+R LHR
Sbjct: 314 YRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLR-----LHRYNVSPA 368
Query: 57 SWQGYDHPEGNF---TETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTK 113
+ + G F T +KDV +L+L AS LAF GE+IL+EA +F+ +L + K
Sbjct: 369 IFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEK 428
Query: 114 LNPY--------MSELVSHSLELPRHYRMRRLEVRWYTEAYRK---KDANCM-------- 154
+S+ + ++L+ H + R+E + Y + YR + A C+
Sbjct: 429 SETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNN 488
Query: 155 --LLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQ 212
LE KLDFN +QS +QEE+KN+T W+ D L FAR+R +E + +PQ
Sbjct: 489 EKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGLPL-FTFARERPLEFYFLVAAGTYEPQ 547
Query: 213 YSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLAL 272
Y+ CR TKVA T++D +Y YGTLDEL+LFT AV RWD++ +LP+YMKL +
Sbjct: 548 YAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCY--- 604
Query: 273 YNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAK 332
++ YDI V+E+A++ K+ G ++ + K W D + +EA+
Sbjct: 605 -----QIYYDI-------------VHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAE 646
Query: 333 WSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLV-SRSINKKALESLG--KYHNLIRWPS 389
W EY PT +EY++N S + L+ ++ + ++++ALE + L S
Sbjct: 647 WLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTELNS 706
Query: 390 TIFRLSNDLATSKI----GKTASSILCYMHE-TGLSEEIARQHLRNMIDSCWKKMNKEWV 444
I RL++D T K G+ ASSI CYM + +EE A H+ ++++ K++ +E++
Sbjct: 707 LISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFL 766
Query: 445 N-DQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRV 486
D PF + F R+ ++ GD G K +
Sbjct: 767 KPDDVPFA--CKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHI 807
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 182 bits (461), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 145/516 (28%), Positives = 237/516 (45%), Gaps = 87/516 (16%)
Query: 24 EMLPILELIDDVQRLGLGYRFENEIKRALH-----------------------------R 54
++L L L+D+++ LG+G F+ EIK AL R
Sbjct: 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLR 304
Query: 55 ILSWQGYD----------HPEGNFTET---VHKDVKGVLSLNEASYLAFEGEDILNEALT 101
L GY+ G F + H +++ V++L AS LAF E +++A
Sbjct: 305 TLRMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARK 364
Query: 102 FSRTHLNQ-LKTKL--NPYMSELVSHSLELPRHYRMRRLEVRWYTEAY------RKKD-- 150
F+ +L + L TK+ N + + + + +E P H + RLE R Y ++Y ++K
Sbjct: 365 FAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLY 424
Query: 151 -----ANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSV 205
+N LE AKLDFN VQS +QEE+K LTRWW++ +A ++ F R R+ E + S
Sbjct: 425 RMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMA-DINFTRHRVAEVYFSSA 483
Query: 206 GMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYM 265
+P+YS R A TK+ + D + ++ TLDEL+ FT V+RWD + ++++P M
Sbjct: 484 TF--EPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECM 541
Query: 266 KLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCK 325
+ F + + E VN D++K G ++ ++ K W
Sbjct: 542 QTCFKVWFKLMEE------------------VNN---DVVKVQGRDMLAHIRKPWELYFN 580
Query: 326 SFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLI 385
++QE +W Y PTFEEYL+ S + L+ + +E + N+
Sbjct: 581 CYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMF 640
Query: 386 RWPSTIFRLSNDLATSKI----GKTASSILCYMHET-GLSEEIARQHLRNMIDSCWKKMN 440
S +RL+ND T + G+ AS I CYM + G +EE A +H+ ++D K+ +
Sbjct: 641 ELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEAS 700
Query: 441 KEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHG 476
E+ + FNL Q Y++ D +G
Sbjct: 701 FEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFIDGYG 736
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 137/332 (41%), Gaps = 76/332 (22%)
Query: 31 LIDDVQRLGLGYRFENEIKRALH-----------------------------RILSWQGY 61
++D +QRLG+ FE EIK L R+L GY
Sbjct: 251 IVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 62 D---------HPEGNFTETV---HKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQ 109
EG F V ++ V G+ +L AS LAF E+IL A FS +L +
Sbjct: 311 QVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLE 370
Query: 110 LKTK---LNPY--MSEL---VSHSLELPRHYRMRRLEVRWYTEAYRKKDA---------- 151
+ + ++ + M +L + +LE+P + + R+E R+Y + Y ++
Sbjct: 371 KREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRM 430
Query: 152 ----NCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGM 207
N LE AK D+N Q+ +Q E +W+E+ L++ R L+EC+ +
Sbjct: 431 PYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRLSE-WGVRRSELLECYYLAAAT 489
Query: 208 VPKPQYSNCRRALTKVAAFVTII-----DYIYAVYGTLDELELFTYAVERWD--INAVN- 259
+ + + S+ R K + V I + + D+ + R D N N
Sbjct: 490 IFESERSHERMVWAKSSVLVKAISSSFGESSDSRRSFSDQFHEYIANARRSDHHFNDRNM 549
Query: 260 --DLPNYMKLSFLA--LYNTINEMAYDILKQH 287
D P ++ S LA L T+N+M++D+ H
Sbjct: 550 RLDRPGSVQASRLAGVLIGTLNQMSFDLFMSH 581
>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
pdb|2ZOQ|B Chain B, Structural Dissection Of Human Mitogen-Activated Kinase
Erk1
Length = 382
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 8/133 (6%)
Query: 178 TRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVY 237
TRW+ ++ N ++ IWSVG + SN R + ++ +++I +
Sbjct: 210 TRWYRAPEIMLN---SKGYTKSIDIWSVGCILAEMLSN--RPIFPGKHYLDQLNHILGIL 264
Query: 238 GTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISF-PALYNT 296
G+ + +L + N + LP+ K+++ L+ + A D+L + ++F P T
Sbjct: 265 GSPSQEDL-NCIINMKARNYLQSLPSKTKVAWAKLFPKSDSKALDLLDRMLTFNPNKRIT 323
Query: 297 VNE-MAYDILKQH 308
V E +A+ L+Q+
Sbjct: 324 VEEALAHPYLEQY 336
>pdb|1OZ9|A Chain A, Crystal Structure Of Aq_1354, A Hypothetical Protein From
Aquifex Aeolicus
Length = 150
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 40 LGYRFENEIKRAL-HRILSWQGYDHPEGNFTE 70
LG+ E E+KR + H I+ GYDH +G E
Sbjct: 101 LGHSLEEEVKRLIVHGIVHLLGYDHEKGGEEE 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,912,688
Number of Sequences: 62578
Number of extensions: 616039
Number of successful extensions: 1417
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 32
length of query: 490
length of database: 14,973,337
effective HSP length: 103
effective length of query: 387
effective length of database: 8,527,803
effective search space: 3300259761
effective search space used: 3300259761
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)