Query 045043
Match_columns 490
No_of_seqs 170 out of 838
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:18:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045043.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045043hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 9E-132 2E-136 1076.2 46.8 467 2-489 28-538 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 7E-123 1E-127 1028.7 41.9 439 24-489 269-771 (784)
3 PLN02592 ent-copalyl diphospha 100.0 2.4E-96 5E-101 813.4 38.0 405 24-488 309-793 (800)
4 PF03936 Terpene_synth_C: Terp 100.0 4.2E-47 9.2E-52 375.7 22.8 265 155-440 1-270 (270)
5 cd00868 Terpene_cyclase_C1 Ter 100.0 6E-45 1.3E-49 362.9 29.8 280 169-469 1-284 (284)
6 PF01397 Terpene_synth: Terpen 100.0 5.2E-37 1.1E-41 289.3 11.9 125 2-126 23-183 (183)
7 cd00687 Terpene_cyclase_nonpla 100.0 2.7E-31 5.9E-36 268.7 20.7 241 176-443 18-265 (303)
8 PLN02150 terpene synthase/cycl 99.9 4.2E-28 9.1E-33 206.1 9.1 86 403-489 3-89 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 9.9E-20 2.2E-24 173.2 12.3 225 203-463 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.1 0.0091 2E-07 62.4 13.4 218 202-468 71-298 (376)
11 cd00686 Terpene_cyclase_cis_tr 96.5 0.028 6.1E-07 58.0 11.8 206 213-465 81-295 (357)
12 PF00494 SQS_PSY: Squalene/phy 94.5 1.8 3.9E-05 43.0 16.0 195 200-443 7-219 (267)
13 TIGR03464 HpnC squalene syntha 92.5 13 0.00028 37.3 19.0 170 200-424 7-182 (266)
14 TIGR03465 HpnD squalene syntha 92.2 12 0.00026 37.4 17.7 209 200-463 7-228 (266)
15 cd00683 Trans_IPPS_HH Trans-Is 90.8 19 0.0004 35.9 18.7 210 200-464 13-238 (265)
16 cd00867 Trans_IPPS Trans-Isopr 78.9 25 0.00054 33.9 11.3 85 313-402 87-172 (236)
17 PLN02632 phytoene synthase 76.1 1E+02 0.0023 32.0 19.9 118 201-366 63-185 (334)
18 cd00685 Trans_IPPS_HT Trans-Is 66.0 84 0.0018 31.1 11.7 87 312-402 109-195 (259)
19 TIGR02749 prenyl_cyano solanes 60.7 1.5E+02 0.0033 30.6 12.8 87 312-402 134-220 (322)
20 PLN02857 octaprenyl-diphosphat 56.7 1.5E+02 0.0032 32.1 12.1 87 312-402 228-314 (416)
21 KOG1719 Dual specificity phosp 55.4 8.6 0.00019 35.9 2.2 39 403-441 120-165 (183)
22 PLN02890 geranyl diphosphate s 52.6 2.6E+02 0.0057 30.3 13.2 88 311-402 227-314 (422)
23 COG3707 AmiR Response regulato 52.0 11 0.00023 36.4 2.3 42 392-433 128-174 (194)
24 PF03861 ANTAR: ANTAR domain; 46.7 13 0.00028 28.2 1.7 28 406-433 15-42 (56)
25 TIGR02748 GerC3_HepT heptapren 46.4 3.2E+02 0.0069 28.2 12.4 85 312-402 130-216 (319)
26 PF12368 DUF3650: Protein of u 42.9 17 0.00036 24.1 1.4 18 412-429 9-26 (28)
27 COG0142 IspA Geranylgeranyl py 42.1 4.1E+02 0.0089 27.4 14.7 103 312-419 135-251 (322)
28 CHL00151 preA prenyl transfera 41.1 3.8E+02 0.0082 27.7 12.0 85 313-402 136-221 (323)
29 PF10073 DUF2312: Uncharacteri 30.7 46 0.00099 27.2 2.5 47 31-86 9-71 (74)
30 COG1308 EGD2 Transcription fac 28.3 43 0.00094 29.9 2.2 21 410-430 88-108 (122)
31 COG5123 TOA2 Transcription ini 27.6 22 0.00048 30.5 0.3 41 76-125 1-41 (113)
32 smart00463 SMR Small MutS-rela 27.0 76 0.0017 25.4 3.3 24 417-440 7-30 (80)
33 PF01713 Smr: Smr domain; Int 25.7 71 0.0015 25.8 2.9 28 417-444 4-31 (83)
34 PRK10888 octaprenyl diphosphat 25.7 7.5E+02 0.016 25.5 14.6 86 312-402 131-217 (323)
35 PRK12793 flaF flagellar biosyn 24.1 2.5E+02 0.0054 24.8 6.2 44 418-462 39-82 (115)
36 smart00400 ZnF_CHCC zinc finge 23.6 64 0.0014 24.2 2.1 25 404-428 30-54 (55)
37 PF07739 TipAS: TipAS antibiot 21.4 1.8E+02 0.0039 24.6 4.8 41 237-278 10-50 (118)
38 KOG1720 Protein tyrosine phosp 21.1 62 0.0014 31.7 1.9 28 403-430 158-186 (225)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=9.1e-132 Score=1076.15 Aligned_cols=467 Identities=47% Similarity=0.786 Sum_probs=452.1
Q ss_pred hHHHHHHHHHHHHHHHHhhc--cCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhcC--------------------
Q 045043 2 KYQRRAKELEEEVKFMINNE--NGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQ-------------------- 59 (490)
Q Consensus 2 ~~~~~~~~lk~~v~~~l~~~--~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~-------------------- 59 (490)
.+.+++++||++||+||... ..|++++|++||+||||||||||++||+++|++||+.+
T Consensus 28 ~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~dl~~~al~FRl 107 (542)
T cd00684 28 ELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRL 107 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhhcccccccCCCHHHHHHHHHH
Confidence 36789999999999999863 33899999999999999999999999999999999732
Q ss_pred ----cccc----------CCCccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhc---cCCChhhHh
Q 045043 60 ----GYDH----------PEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTK---LNPYMSELV 122 (490)
Q Consensus 60 ----Gy~v----------~~g~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~---~~~~l~~~V 122 (490)
||+| ++|+|++++.+||+||||||||||++||||+|||||++||++||+++++. ++++|+++|
T Consensus 108 LR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V 187 (542)
T cd00684 108 LRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEI 187 (542)
T ss_pred HHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHH
Confidence 9999 66999999999999999999999999999999999999999999999976 789999999
Q ss_pred hhhccccccccchhhHHHHHHHHhc-ccCCChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHH
Q 045043 123 SHSLELPRHYRMRRLEVRWYTEAYR-KKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECF 201 (490)
Q Consensus 123 ~~aL~~P~~~~~~Rle~r~yi~~Y~-~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~y 201 (490)
++||++|||+++||||||+||++|+ ++++|++||||||+|||+||++||+||++++|||+++||.+++||+|+|+++||
T Consensus 188 ~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~y 267 (542)
T cd00684 188 EYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEELKILSRWWKDLDLASKLPFARDRLVECY 267 (542)
T ss_pred HHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHH
Confidence 9999999999999999999999999 889999999999999999999999999999999999999888899999999999
Q ss_pred HHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHH
Q 045043 202 IWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAY 281 (490)
Q Consensus 202 fw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~ 281 (490)
||++|++|||++|.+|+++||+++|++++||+||+|||++|++.||+||+|||.++++++|+|||+||.+|+++++++
T Consensus 268 f~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei-- 345 (542)
T cd00684 268 FWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEI-- 345 (542)
T ss_pred HHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHH
Q 045043 282 DILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVH 361 (490)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~ 361 (490)
+.++.+++|+++.++++++|+++++||++||+|+++|++||++|||++|.+|+|+++++++
T Consensus 346 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~ 406 (542)
T cd00684 346 -------------------EEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLT 406 (542)
T ss_pred -------------------HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 045043 362 SYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWK 437 (490)
Q Consensus 362 ~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk 437 (490)
++++||+.+|+++++|+..+|+++++++.++||+|||+|++ +|+++|+|.|||+|+|+|+|+|+++++++|+++||
T Consensus 407 ~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk 486 (542)
T cd00684 407 SFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWK 486 (542)
T ss_pred HHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043 438 KMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 438 ~ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~ 489 (490)
+||++++++++++|++|+++++|+||+++++|+++||||.|++.+|++|+++
T Consensus 487 ~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~l 538 (542)
T cd00684 487 ELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSL 538 (542)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Confidence 9999999983389999999999999999999999999999988899999986
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=6.9e-123 Score=1028.71 Aligned_cols=439 Identities=28% Similarity=0.443 Sum_probs=419.0
Q ss_pred CccchhhhHHHHHhcCCccccHHHHHHHHHhchhcC------------------------cccc---------CCCcccc
Q 045043 24 EMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQ------------------------GYDH---------PEGNFTE 70 (490)
Q Consensus 24 d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~------------------------Gy~v---------~~g~F~~ 70 (490)
++++++|+||+||||||+|||++||+++|+++|+.+ ||+| +++ |++
T Consensus 269 ~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~~~~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~~-F~~ 347 (784)
T PLN02279 269 DQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEEEIFLDLATCALAFRILRLNGYDVSSDPLKQFAEDH-FSD 347 (784)
T ss_pred cHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHcCCCCChhHHhhcCCCc-ccc
Confidence 789999999999999999999999999999999831 9999 445 998
Q ss_pred cc---chhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhc-------cCCChhhHhhhhccccccccchhhHHH
Q 045043 71 TV---HKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTK-------LNPYMSELVSHSLELPRHYRMRRLEVR 140 (490)
Q Consensus 71 ~~---~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~~~Rle~r 140 (490)
++ .+||+||||||||||++||||+|||||+.||++||++.++. ++++|+++|+|||++|||+++||||||
T Consensus 348 ~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l~RlEaR 427 (784)
T PLN02279 348 SLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANLERLANR 427 (784)
T ss_pred hhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCccHHHHH
Confidence 88 59999999999999999999999999999999999998853 578999999999999999999999999
Q ss_pred HHHHHhc-ccC------------CChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHhcc
Q 045043 141 WYTEAYR-KKD------------ANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGM 207 (490)
Q Consensus 141 ~yi~~Y~-~~~------------~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~ 207 (490)
+||++|+ ++. +|++||||||+|||+||++||+||++++|||+++|| .++||||||++|||||++|+
T Consensus 428 ~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~Yf~aaa~ 506 (784)
T PLN02279 428 RSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYCYFSAAAT 506 (784)
T ss_pred HHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHHHHHHHHh
Confidence 9999999 664 899999999999999999999999999999999999 79999999999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcc-cccCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 045043 208 VPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDIN-AVNDLPNYMKLSFLALYNTINEMAYDILKQ 286 (490)
Q Consensus 208 ~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~-~~~~lPe~mk~~~~al~~~~~e~~~~~~~~ 286 (490)
+|||+||.+|++|||.++|++++||+||+|||.|||+.||+||+|||.+ .++++|+|||+||.+|++++||+
T Consensus 507 ~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei------- 579 (784)
T PLN02279 507 LFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEI------- 579 (784)
T ss_pred hcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999998 56899999999999999999999
Q ss_pred cccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhh
Q 045043 287 HISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLV 366 (490)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~ 366 (490)
+.++.+.+|+++++|++++|++++++|++||+|+++||+||++|||+|+.+|+|.++++..+++++
T Consensus 580 --------------~~~~~~~qGr~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~ 645 (784)
T PLN02279 580 --------------GDKAFTWQGRNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLV 645 (784)
T ss_pred --------------HHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHh
Confidence 999888889999999999999999999999999999999999999999999999998888888889
Q ss_pred cCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcC--CCCHHHHHHHHHHHHHHHHHHHH
Q 045043 367 SRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHET--GLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 367 g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~--gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
|..+|+++++| .++|+++++++.|+||+|||+|++ +|++ |+|+|||+|+ |+|+|||+++++++|+++||+||
T Consensus 646 G~~l~eev~e~-~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn 723 (784)
T PLN02279 646 GPKLSEEVVDS-PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELL 723 (784)
T ss_pred CCCCCHHHHhC-cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 489999999999999999999999 9998 9999999997 89999999999999999999999
Q ss_pred HHHhcCC-CCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043 441 KEWVNDQ-HPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 441 ~e~l~~~-~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~ 489 (490)
+++++++ +++|++|+++++|++|+++++|+++||||.+ .+|++|+++
T Consensus 724 ~~~l~~~~~~vp~~~~~~~ln~aR~~~~~Y~~~Dgyt~~--~~k~~i~~l 771 (784)
T PLN02279 724 RLVLQEKGSNVPRECKDLFWKMSKVLHLFYRKDDGFTSN--DMMSLVKSV 771 (784)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHhhhhheeCCCCCChH--HHHHHHHHH
Confidence 9999753 2799999999999999999999999999974 699999986
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=2.4e-96 Score=813.37 Aligned_cols=405 Identities=23% Similarity=0.323 Sum_probs=368.4
Q ss_pred CccchhhhHHHHHhcCCccccHHHHHHHHHhchhc---------------C--------------cccc---------CC
Q 045043 24 EMLPILELIDDVQRLGLGYRFENEIKRALHRILSW---------------Q--------------GYDH---------PE 65 (490)
Q Consensus 24 d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~---------------~--------------Gy~v---------~~ 65 (490)
|++++||+||+||||||+|||++||+++|+++|+. + ||+| ++
T Consensus 309 d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~~ 388 (800)
T PLN02592 309 DLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEKG 388 (800)
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcCC
Confidence 78999999999999999999999999999999871 0 8999 78
Q ss_pred Ccccccc---chhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhh--c------cCCChhhHhhhhccccccccc
Q 045043 66 GNFTETV---HKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKT--K------LNPYMSELVSHSLELPRHYRM 134 (490)
Q Consensus 66 g~F~~~~---~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~--~------~~~~l~~~V~~aL~~P~~~~~ 134 (490)
|+|++.+ .+|++||||||||||++||||+|||+|+.||++||++.++ + ++++|+++|+|||++|||+++
T Consensus 389 g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~l 468 (800)
T PLN02592 389 GEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYASL 468 (800)
T ss_pred CCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcCc
Confidence 8998665 7999999999999999999999999999999999999853 1 467899999999999999999
Q ss_pred hhhHHHHHHHHhc-ccC-------------CChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHH
Q 045043 135 RRLEVRWYTEAYR-KKD-------------ANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMEC 200 (490)
Q Consensus 135 ~Rle~r~yi~~Y~-~~~-------------~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~ 200 (490)
||||||+||++|+ +++ +|++||||||+|||+||++||+||++++|||+++|| .++||||||++||
T Consensus 469 ~RlEaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~ve~ 547 (800)
T PLN02592 469 PRVETRFYIEQYGGEDDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELLLA 547 (800)
T ss_pred chHHHHHHHHHhcCCcccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHHHH
Confidence 9999999999999 655 499999999999999999999999999999999999 5999999999999
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhh--------hcCcccccCCCh------hHH
Q 045043 201 FIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVE--------RWDINAVNDLPN------YMK 266 (490)
Q Consensus 201 yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~--------rWd~~~~~~lPe------~mk 266 (490)
|||++|++|||+||.+|++|||.+++++++||+||+|||+|||+.||++|+ |||.+++++||+ |||
T Consensus 548 Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~mk 627 (800)
T PLN02592 548 YFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKTGE 627 (800)
T ss_pred HHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhHHH
Confidence 999999999999999999999999999999999999999999999999996 899999999988 999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHH
Q 045043 267 LSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYL 346 (490)
Q Consensus 267 ~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl 346 (490)
+||.||+||+|++ +.++.+.||+++.+|++++|.++|+ +|..+|+
T Consensus 628 i~f~aLy~tinei---------------------a~~a~~~qGr~v~~~L~~~W~~l~~------~w~~~g~-------- 672 (800)
T PLN02592 628 ELVGLLLGTLNQL---------------------SLDALEAHGRDISHLLRHAWEMWLL------KWLLEGD-------- 672 (800)
T ss_pred HHHHHHHHHHHHH---------------------HHHHHHHhCccHHHHHHHHHHHHHH------HHHhcCc--------
Confidence 9999999999999 8999999999999999999999998 5766665
Q ss_pred hhcccccchhHHHHHHHH-hhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccccCCCcchhhhhhhcCC-CCHHHH
Q 045043 347 ENAWRSSSGELSLVHSYF-LVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETG-LSEEIA 424 (490)
Q Consensus 347 ~~~~~Ssg~~~ll~~~~~-~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~krG~~~n~V~cyMke~g-vS~EeA 424 (490)
+|+|++.+++.+++ .+|..+|+++++ +|++.++++.+.||+||++|++++.++ .| +|+ +|
T Consensus 673 ----~s~~~~~ilv~~~~l~~g~~lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~---------~~~~~~-~a 734 (800)
T PLN02592 673 ----GRQGEAELLVKTINLTAGRSLSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH---------INTYNP-EE 734 (800)
T ss_pred ----eeccchhhHHHHHHHhcCCCCCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc---------CCcccH-HH
Confidence 45577777778888 459999999664 799999999999999999999954432 23 455 89
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhh
Q 045043 425 RQHLRNMIDSCWKKMNKEWVNDQ-HPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVI 488 (490)
Q Consensus 425 ~~~i~~~i~~~wk~ln~e~l~~~-~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~ 488 (490)
++++.+.|+.+++++.+.+++.. +.+|++|+++|+|++| +||.. ||+.| ..++.+|..
T Consensus 735 ~~~~~~~ie~~~~eL~~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~-~~~~~~i~~ 793 (800)
T PLN02592 735 KSKTTPSIESDMQELVQLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDP-GTINYHIAK 793 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCH-HHHHHHHHH
Confidence 99999999999999999999733 3699999999999999 55655 89998 579998864
No 4
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=4.2e-47 Score=375.74 Aligned_cols=265 Identities=30% Similarity=0.408 Sum_probs=245.8
Q ss_pred HHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhh
Q 045043 155 LLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIY 234 (490)
Q Consensus 155 lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~y 234 (490)
+|+|||+|||.||..||+|++++++||+++||..+.+.+|+|+..++|+.+|.++.|+.+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999878887899999999999999888997777779999999999999999
Q ss_pred cccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcC-cccH
Q 045043 235 AVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHG-EIII 313 (490)
Q Consensus 235 D~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 313 (490)
|..|+.++++.|+++++||++.....+|+.+++++.++.++++++ ...+.+.++ +++.
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~---------------------~~~~~~~~~~~~~~ 139 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRI---------------------AARMSPAQRRRDQI 139 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHH---------------------HHHhhhhhcccHHh
Confidence 999999999999999999998888899999999999999999999 777755543 3478
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHH
Q 045043 314 PYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFR 393 (490)
Q Consensus 314 ~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~R 393 (490)
++++++|.+++.++++|++|+..|++||++||++.|+.|+|+++++.++.+++|...++...+++.+.|.+.++++.+++
T Consensus 140 ~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (270)
T PF03936_consen 140 KRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFALGELPPEVLEHPPMLRRLAADIIR 219 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSCHTHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhCCCccccccHHHHHhchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998889777777777777777889999999999
Q ss_pred Hhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 394 LSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 394 L~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
|+|||+|++ +|+.+|.|.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 220 l~NDl~S~~KE~~~g~~~N~v~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 220 LVNDLYSYKKEIARGDVHNLVVVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHHHHHHHTTSCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchhhcchhhcccccHHHHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999998 99999999999999999999999999999999999998
No 5
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=6e-45 Score=362.90 Aligned_cols=280 Identities=46% Similarity=0.771 Sum_probs=262.7
Q ss_pred hhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHH
Q 045043 169 SYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTY 248 (490)
Q Consensus 169 ~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~ 248 (490)
.||+|++++++||+++||....+++|.+...+|+|+++++|+|+.+..|+++||+++|+|++||+||..++.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999976666999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Q 045043 249 AVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFL 328 (490)
Q Consensus 249 av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l 328 (490)
+++||+....+.+|+++++++.++.++++++ ...+.+.+|..+..++++.|.+++.++.
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~---------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 139 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEI---------------------EEELAKEGGSESLPYLKEAWKDLLRAYL 139 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHH---------------------HHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 9999999989999999999999999999999 8888888888999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cC
Q 045043 329 QEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IG 404 (490)
Q Consensus 329 ~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG 404 (490)
+|++|+..|++||++||+.+|..|+|+++++..+.+++|..+|++.+.+....+.+++.++.+++|+||++|++ +|
T Consensus 140 ~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~~~~g~~l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g 219 (284)
T cd00868 140 VEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARG 219 (284)
T ss_pred HHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHHHHcCCCCCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccC
Confidence 99999999999999999999999999999999999999999998555556778999999999999999999998 89
Q ss_pred CCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhhhchhc
Q 045043 405 KTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTY 469 (490)
Q Consensus 405 ~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y 469 (490)
+.+|+|.|||+++|+|.++|++++.++++++|++|++.+.....+.|+++++.+.|..|+....|
T Consensus 220 ~~~N~v~vl~~~~~~~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 220 EVANSVECYMKEYGVSEEEALEELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred CcccHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999999999999999999999985312578999999999999887655
No 6
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=5.2e-37 Score=289.27 Aligned_cols=125 Identities=48% Similarity=0.705 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhcC----------------------
Q 045043 2 KYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQ---------------------- 59 (490)
Q Consensus 2 ~~~~~~~~lk~~v~~~l~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~---------------------- 59 (490)
++.+++++||++||.||.....|++++|++||+||||||+|||++||+++|+++|+.+
T Consensus 23 ~~~~~~~~Lk~~v~~~l~~~~~d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~~~~~~~~~~~~dL~~~AL~FRLLRq 102 (183)
T PF01397_consen 23 KCKERAEELKEEVRNMLPASYPDPLEKLELIDTLQRLGISYHFEDEIKEILDSIYRSWDEDNEEIDDLYTTALRFRLLRQ 102 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTTTTTSHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccccccccCchhHHHHHHHHHHH
Confidence 4678999999999999987654899999999999999999999999999999999852
Q ss_pred -cccc----------CCCccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhccCC---ChhhHhhhh
Q 045043 60 -GYDH----------PEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNP---YMSELVSHS 125 (490)
Q Consensus 60 -Gy~v----------~~g~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~---~l~~~V~~a 125 (490)
||+| ++|+|+.++.+||+||||||||||+++|||+|||||+.||++||++++++..+ +|+++|+||
T Consensus 103 hGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~A 182 (183)
T PF01397_consen 103 HGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILDEARAFTTKHLKSLLSNLSIPDPHLAKEVKHA 182 (183)
T ss_dssp TT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHH
T ss_pred cCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHh
Confidence 9999 78999999999999999999999999999999999999999999999975543 499999999
Q ss_pred c
Q 045043 126 L 126 (490)
Q Consensus 126 L 126 (490)
|
T Consensus 183 L 183 (183)
T PF01397_consen 183 L 183 (183)
T ss_dssp H
T ss_pred C
Confidence 7
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=99.98 E-value=2.7e-31 Score=268.66 Aligned_cols=241 Identities=16% Similarity=0.103 Sum_probs=207.2
Q ss_pred HHHHHHhhhCccccchhhhhhHHHHHHHHhccccCCCCchHHH-HHHHHHHHHHHHHHhhccc-CCHHHHHHHHHHhhhc
Q 045043 176 NLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRR-ALTKVAAFVTIIDYIYAVY-GTLDELELFTYAVERW 253 (490)
Q Consensus 176 ~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~~-gt~eEl~~ft~av~rW 253 (490)
++..|..+.|+... +.+|+++..+.|+..+.++.|+++..|+ +.++++.|++++||+||.. ++++++..+++.+.++
T Consensus 18 ~~~~w~~~~~l~~~-~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~ 96 (303)
T cd00687 18 EYLEWVLEEMLIPS-EKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDI 96 (303)
T ss_pred HHHHHHHHcCCCCc-chhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhc
Confidence 47789999977433 4599999998777777667799999999 6779999999999999976 5999999999999885
Q ss_pred CcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Q 045043 254 DINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKW 333 (490)
Q Consensus 254 d~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW 333 (490)
.......-|....++..++.+++.++ ...+ +.....++++.|.+++.++++|++|
T Consensus 97 ~~~~~~~~~~~~~p~~~~~~d~~~r~---------------------~~~~----~~~~~~r~~~~~~~~~~a~~~e~~~ 151 (303)
T cd00687 97 LRGDGLDSPDDATPLEFGLADLWRRT---------------------LARM----SAEWFNRFAHYTEDYFDAYIWEGKN 151 (303)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHh---------------------ccCC----CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322212578888999999999988 4443 2234799999999999999999999
Q ss_pred hhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc-----cCCCcc
Q 045043 334 SYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK-----IGKTAS 408 (490)
Q Consensus 334 ~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k-----rG~~~n 408 (490)
+.+|++||++||+++|..|+|+++++.++.+++|..+|+++.+. ....+++++++.+++|+|||+||+ .|+.+|
T Consensus 152 ~~~~~~psl~eYl~~R~~~~g~~~~~~l~~~~~g~~lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N 230 (303)
T cd00687 152 RLNGHVPDVAEYLEMRRFNIGADPCLGLSEFIGGPEVPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHN 230 (303)
T ss_pred HhcCCCcCHHHHHHHhhhcccccccHHHHHHhcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccch
Confidence 99999999999999999999999999999999999999986654 234558899999999999999998 788899
Q ss_pred hhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045043 409 SILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443 (490)
Q Consensus 409 ~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 443 (490)
+|.|+|+++|+|.|+|++++.++++++++++.+..
T Consensus 231 ~V~vl~~~~g~s~~eA~~~~~~~~~~~~~~f~~~~ 265 (303)
T cd00687 231 LVKVLAEEHGLSLEEAISVVRDMHNERITQFEELE 265 (303)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988654
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.95 E-value=4.2e-28 Score=206.12 Aligned_cols=86 Identities=28% Similarity=0.499 Sum_probs=84.0
Q ss_pred cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhhhchh-cccCCCCCCCChh
Q 045043 403 IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCT-YQYGDEHGAPDGR 481 (490)
Q Consensus 403 rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~-Y~~~D~~t~~~~~ 481 (490)
|||++|+|+|||||||+|+|||+++++++|+++||+||+|+|+++ ++|.+++++++|+||+++|+ |+++||||.|++.
T Consensus 3 rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~-~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~~ 81 (96)
T PLN02150 3 RGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIK-DVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHGK 81 (96)
T ss_pred CCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHhheecCCCCCCCCcHH
Confidence 899999999999999999999999999999999999999999988 89999999999999999999 9999999998889
Q ss_pred HHHHhhhc
Q 045043 482 AKKRVVIS 489 (490)
Q Consensus 482 ~k~~i~~~ 489 (490)
+|++|++|
T Consensus 82 ~K~~I~sL 89 (96)
T PLN02150 82 LKDLITSL 89 (96)
T ss_pred HHHHHHHH
Confidence 99999987
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.81 E-value=9.9e-20 Score=173.18 Aligned_cols=225 Identities=27% Similarity=0.294 Sum_probs=178.1
Q ss_pred HHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHH
Q 045043 203 WSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYD 282 (490)
Q Consensus 203 w~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~ 282 (490)
|+++++|+|+++..|.+++++.++++++||++|..++..........+ .....|..+...+..+.+.++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~--- 72 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEEL--- 72 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHH---
Confidence 566778889989999999999999999999999877666655554333 23346777778888888888887
Q ss_pred HhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHH
Q 045043 283 ILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHS 362 (490)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~ 362 (490)
..... ..+...+.+.|.+++.++.+|+.|... ..||++||+..+..++|.. +....
T Consensus 73 ------------------~~~~~----~~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t~~~-~~~~~ 128 (243)
T cd00385 73 ------------------AREGS----PEALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKTAGL-VGALC 128 (243)
T ss_pred ------------------HhCCC----HHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhHHHH-HHHHH
Confidence 33221 345789999999999999999999977 8899999999999998544 44455
Q ss_pred HHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cC-CCcchhhhhhhcCCC------------CHHHHH
Q 045043 363 YFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IG-KTASSILCYMHETGL------------SEEIAR 425 (490)
Q Consensus 363 ~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG-~~~n~V~cyMke~gv------------S~EeA~ 425 (490)
..+++...++ ..+......+....+.+.+|.||+.|+. +| +..|++.++|+++|+ +.++|.
T Consensus 129 ~~~~~~~~~~--~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 206 (243)
T cd00385 129 LLGAGLSGGE--AELLEALRKLGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEAL 206 (243)
T ss_pred HHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHH
Confidence 5666655554 3334456778899999999999999999 43 668999999999999 889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhh
Q 045043 426 QHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLAR 463 (490)
Q Consensus 426 ~~i~~~i~~~wk~ln~e~l~~~~~~p~~~~~~~~n~aR 463 (490)
+.+..+++++|+++++...... +.+.++++.+.++.|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 243 (243)
T cd00385 207 EELAKLAEEALKELNELILSLP-DVPRALLALALNLYR 243 (243)
T ss_pred HHHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHHHhC
Confidence 9999999999999998766433 356777777777654
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.07 E-value=0.0091 Score=62.37 Aligned_cols=218 Identities=14% Similarity=0.097 Sum_probs=122.0
Q ss_pred HHHhccccCCCCch-HHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHH
Q 045043 202 IWSVGMVPKPQYSN-CRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMA 280 (490)
Q Consensus 202 fw~~a~~feP~~s~-~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~ 280 (490)
-+++...| |..+. .+..+|-..++++++||.++.. .+++..|-+.+-. +. .... ++..++.+.+.
T Consensus 71 v~~~~~~y-~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~--Gq-~Q~~-----p~L~~~~~~L~--- 136 (376)
T PF06330_consen 71 VNMAVYCY-PHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL--GQ-PQKH-----PLLDGFASLLR--- 136 (376)
T ss_dssp HHHHHHHS-TTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH--T----SS-----HHHHHHHHHHH---
T ss_pred hheeEeec-CCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc--CC-CCCC-----HHHHHHHHHHH---
Confidence 34433444 65555 4668999999999999997643 4666666655543 11 1111 23333333333
Q ss_pred HHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCC-CCCCHHHHHhhcccccchhHHH
Q 045043 281 YDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNE-YTPTFEEYLENAWRSSSGELSL 359 (490)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g-~vPs~eEYl~~~~~Ssg~~~ll 359 (490)
++.+.-|+.+.+-+..+--+++.+...|.+..+.. .-|.+-+|+. .=+|.....
T Consensus 137 ----------------------~~~~~fgpf~anmI~~STLdFi~g~~LE~~~f~~~p~A~~FP~fLR---~ktGlsEaY 191 (376)
T PF06330_consen 137 ----------------------EMWRHFGPFCANMIVKSTLDFINGCWLEQKNFHGSPGAPDFPDFLR---RKTGLSEAY 191 (376)
T ss_dssp ----------------------HHHTTS-HHHHHHHHHHHHHHHHHHHHHTTT----TT-TTHHHHHH---HHHH-HHHH
T ss_pred ----------------------HHHHHcchHHHHHHHHHHHHHHHHHHhhcccCCCCCCCccccHHHH---hccCcchhh
Confidence 33444566677888899999999999998754211 1245666663 334444433
Q ss_pred HHHHHhhcCCCcHHHHHhhhchhhh---HHHHHHHHHHhhcccccc-----cCCCcchhhhhhhcCCCCHHHHHHHHHHH
Q 045043 360 VHSYFLVSRSINKKALESLGKYHNL---IRWPSTIFRLSNDLATSK-----IGKTASSILCYMHETGLSEEIARQHLRNM 431 (490)
Q Consensus 360 ~~~~~~~g~~l~~e~~e~~~~~p~i---i~~s~~i~RL~NDI~S~k-----rG~~~n~V~cyMke~gvS~EeA~~~i~~~ 431 (490)
+...+ -....|+. .....+ +--.....-++|||.|+= .|+.+|.|.-+-.-+|+|.-+|.+.+.+-
T Consensus 192 A~FiF-Pk~~fpe~-----~~~~~y~~AIpdl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~e 265 (376)
T PF06330_consen 192 AFFIF-PKALFPEV-----EYFIQYTPAIPDLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDE 265 (376)
T ss_dssp HHHT---TTTS-TT-----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHH
T ss_pred eeeec-ccccCChH-----HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHH
Confidence 22222 22223322 223333 334445556899999986 57889999877777899999999998776
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhhhchh
Q 045043 432 IDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCT 468 (490)
Q Consensus 432 i~~~wk~ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~ 468 (490)
.-.+-+++.+. |.+. =| .....+-++++..-.+
T Consensus 266 ti~a~~rv~~v-L~~~--dp-~ll~a~~~Fi~GYi~~ 298 (376)
T PF06330_consen 266 TIEAVERVRRV-LSDK--DP-ELLAAWDSFIQGYIAF 298 (376)
T ss_dssp HHHHHHHHHHH-HTTS---H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hccC--Ch-HHHHHHHHHHHHHHHh
Confidence 66666666554 4432 12 3455555555555443
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=96.52 E-value=0.028 Score=58.00 Aligned_cols=206 Identities=13% Similarity=0.020 Sum_probs=119.6
Q ss_pred CchHHH-HHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccch
Q 045043 213 YSNCRR-ALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFP 291 (490)
Q Consensus 213 ~s~~Rl-~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~ 291 (490)
-|..=+ .++-..+.++++||.=|.. .+.++.|.+.+.. + -....| +...+.+.
T Consensus 81 ~skev~~~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~--G-~~qkhP-----~l~~v~~~---------------- 134 (357)
T cd00686 81 VSKECMADLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQA--G-REQAHP-----WWALVNEH---------------- 134 (357)
T ss_pred CCHHHHHHHHHHHheeeEeccccccc--chHHHHHHHHHhc--C-CCCCCc-----HHHHHHHH----------------
Confidence 555433 5566667788999986532 2455566655544 1 111222 21112222
Q ss_pred hhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCc
Q 045043 292 ALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSIN 371 (490)
Q Consensus 292 ~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~ 371 (490)
=.....--|+.+..-+.++--+++.+..-|.... +..|.-..|-...+.=+|.+-....+. .|
T Consensus 135 ---------l~~~lr~fGpF~s~~IikSTLdFv~g~~iEq~nf--~~~p~A~~fP~ylR~ksGl~E~yA~Fi------FP 197 (357)
T cd00686 135 ---------FPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQYNF--GGFPGSHDYPQFLRRMNGLGHCVGASL------WP 197 (357)
T ss_pred ---------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhcc--CCCCCCcccchHHHhccCCcceeEEEe------cc
Confidence 2233333466777788888889999999996643 335655555555455555443332211 24
Q ss_pred HHHHHhhhchhhhHHHH---HHHHHHhhcccccc-----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045043 372 KKALESLGKYHNLIRWP---STIFRLSNDLATSK-----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443 (490)
Q Consensus 372 ~e~~e~~~~~p~ii~~s---~~i~RL~NDI~S~k-----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 443 (490)
++.|.-...+..+..+. ....-++|||.|+= .++-.|.|.-|.+-+|+|..+|.+.+..-.-.+-+++.+ .
T Consensus 198 k~~FpE~~~~~qi~~AIp~~~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~-V 276 (357)
T cd00686 198 KEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVA-V 276 (357)
T ss_pred hhhCchHhhHHHhhHHHHHHHHHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHH-H
Confidence 44333222233333333 34455899999986 345578888888889999999999888877777777765 4
Q ss_pred hcCCCCCcHHHHHHHHHHhhhh
Q 045043 444 VNDQHPFVEPFVETAFNLARIA 465 (490)
Q Consensus 444 l~~~~~~p~~~~~~~~n~aR~~ 465 (490)
|++. . ..++..+-++++..
T Consensus 277 Lse~-d--p~l~~av~~Fi~GY 295 (357)
T cd00686 277 FSDK-D--PQVMDTIECFMHGY 295 (357)
T ss_pred hcCC-C--hHHHHHHHHHHHHH
Confidence 6554 2 23444555555544
No 12
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=94.45 E-value=1.8 Score=42.96 Aligned_cols=195 Identities=12% Similarity=0.101 Sum_probs=103.9
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHH----HHHHHHHHhhhcCcccccCCChhHHHHHHHHHHH
Q 045043 200 CFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLD----ELELFTYAVERWDINAVNDLPNYMKLSFLALYNT 275 (490)
Q Consensus 200 ~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~e----El~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~ 275 (490)
.||++.-.. | ...|..+.-+-++.-.+||+-|...... -|+-+-+++...-.+..+..|....++..++..+
T Consensus 7 sf~~a~~~l--P--~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~ 82 (267)
T PF00494_consen 7 SFYLASLLL--P--KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADL 82 (267)
T ss_dssp HHHHHHTTS-----HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHH
T ss_pred cHHHHHHHC--C--HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHH
Confidence 344444444 4 5677888889999999999999655322 2444555555422111122333445565555555
Q ss_pred HHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccch
Q 045043 276 INEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSG 355 (490)
Q Consensus 276 ~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~ 355 (490)
.+.. . --++.+.+++.++-+ +.....+||++|.......+.|.
T Consensus 83 ~~~~---------------------~-------------l~~~~l~~li~~~~~---dl~~~~~~t~~~L~~Y~~~vag~ 125 (267)
T PF00494_consen 83 VRRY---------------------G-------------LPREPLLELIDGMEM---DLEFTPYETFADLERYCYYVAGS 125 (267)
T ss_dssp HCCS---------------------H-------------HHHHHHHHHHHHHHH---CTT-S--SSHHHHHHHHHHHTHH
T ss_pred HHHH---------------------h-------------hhHHHHHHHHHHhcc---cccCCCCCCHHHHHHHHHHHHHH
Confidence 5444 1 223345566666653 33345678999999999998887
Q ss_pred hHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhccccc-c-cCCC--cchhhhhhhcCCCCHHHHHHH----
Q 045043 356 ELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATS-K-IGKT--ASSILCYMHETGLSEEIARQH---- 427 (490)
Q Consensus 356 ~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~-k-rG~~--~n~V~cyMke~gvS~EeA~~~---- 427 (490)
...+++-.++..+. ..+..+.+...-.....++++- |+..- - +|-+ +. =.|.+||+|.++-.+.
T Consensus 126 vg~l~~~~~~~~~~-~~~~~~~a~~lG~alql~nilR----d~~~D~~~~gR~ylP~---d~l~~~gv~~~dl~~~~~~~ 197 (267)
T PF00494_consen 126 VGLLLLQLLGAHDP-DEAARDAARALGRALQLTNILR----DIPEDALRRGRIYLPL---DDLRRFGVTPEDLLAGRPRS 197 (267)
T ss_dssp HHHHHHHHHHSSTS-HHHHHHHHHHHHHHHHHHHHHH----THHHH-HHTT---S-H---HHHHHTTSSHHHHHHHG-GG
T ss_pred HHHHHHHHhccccc-hhhHHHHHHHHHHHHHHHHHHH----HhHHHHHhcccccCCc---hhHHHcCCCHHHHHhcccCC
Confidence 76666656544321 1234444332333333443333 44443 2 4442 22 2568899988865432
Q ss_pred ------HHHHHHHHHHHHHHHH
Q 045043 428 ------LRNMIDSCWKKMNKEW 443 (490)
Q Consensus 428 ------i~~~i~~~wk~ln~e~ 443 (490)
+..++..+...+.+..
T Consensus 198 ~~~~~~~~~~~~~A~~~l~~a~ 219 (267)
T PF00494_consen 198 ERLRALIRELAARARAHLDEAR 219 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555433
No 13
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=92.47 E-value=13 Score=37.28 Aligned_cols=170 Identities=21% Similarity=0.198 Sum_probs=86.1
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhccc-CCHHH----HHHHHHHhhh-cCcccccCCChhHHHHHHHHH
Q 045043 200 CFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVY-GTLDE----LELFTYAVER-WDINAVNDLPNYMKLSFLALY 273 (490)
Q Consensus 200 ~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~-gt~eE----l~~ft~av~r-Wd~~~~~~lPe~mk~~~~al~ 273 (490)
+|+|+.-..+ ...|..+.-+-++.=++||+=|.. +++++ |..+-+.+.. ..+. | -.++..+|.
T Consensus 7 sf~~a~~~lp----~~~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~~~~g~-----~--~~pv~~aL~ 75 (266)
T TIGR03464 7 NFPVASLLLP----ARLRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDAIYSGE-----P--AAPVFVALA 75 (266)
T ss_pred cHHHHHHhCC----HHHHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHhCCC-----C--CChHHHHHH
Confidence 4566665554 345667777888889999999964 45443 4444444433 1111 1 113444554
Q ss_pred HHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccccc
Q 045043 274 NTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSS 353 (490)
Q Consensus 274 ~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ss 353 (490)
+++.+. +.. ++.+.+++.++... ......+|++|.......+.
T Consensus 76 ~~~~~~-----------------------------~l~-----~~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vA 118 (266)
T TIGR03464 76 RTVQRH-----------------------------GLP-----IEPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSA 118 (266)
T ss_pred HHHHHc-----------------------------CCC-----hHHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhH
Confidence 444333 111 23445555555422 22345689999999888888
Q ss_pred chhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccccCCCcchhhhhhhcCCCCHHHH
Q 045043 354 SGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEEIA 424 (490)
Q Consensus 354 g~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~krG~~~n~V~cyMke~gvS~EeA 424 (490)
|+...+++-.++.+. .+........-.-...++++=-+-.|.. +|-+- .=.=.|+++|+|.|+-
T Consensus 119 g~vg~l~~~i~g~~~---~~~~~~A~~lG~AlQltniLRDl~eD~~---~gR~Y-LP~~~l~~~Gv~~edl 182 (266)
T TIGR03464 119 NPVGRLVLDLYGASD---PENVALSDAICTALQLINFWQDVGVDYR---KGRVY-LPRDDLARFGVSEEDL 182 (266)
T ss_pred HHHHHHHHHHcCCCC---hhHHHHHHHHHHHHHHHHHHHhhHHHHh---cCCcc-CCHHHHHHcCCCHHHH
Confidence 866655555544322 1222222212222233333333333332 45420 0011367899997664
No 14
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=92.22 E-value=12 Score=37.44 Aligned_cols=209 Identities=14% Similarity=0.128 Sum_probs=103.8
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHH----HHHHHHHhhhcCcccccCCChhHHHHHHHHHHH
Q 045043 200 CFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDE----LELFTYAVERWDINAVNDLPNYMKLSFLALYNT 275 (490)
Q Consensus 200 ~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eE----l~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~ 275 (490)
+|+++.-..+ ...|..+.-+-++.-.+||+=|..+++++ |+-+-+++..-. ..-| -.++..++.++
T Consensus 7 sF~~a~~~lp----~~~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~----~g~~--~~pv~~al~~~ 76 (266)
T TIGR03465 7 SFYYGMRLLP----PERRRAMTALYAFCREVDDIVDEDSDPEVAQAKLAWWRAEIDRLY----AGAP--SHPVARALADP 76 (266)
T ss_pred cHHHHHHHCC----HHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHh----CCCC--CChHHHHHHHH
Confidence 4666665554 35677778888899999999997444332 222222222200 0001 12333333333
Q ss_pred HHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccch
Q 045043 276 INEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSG 355 (490)
Q Consensus 276 ~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~ 355 (490)
+... +. -++.+.+++.++-+... ....+|++|+......+.|.
T Consensus 77 ~~~~-----------------------------~l-----~~~~~~~li~g~~~Dl~---~~~~~t~~dL~~Y~~~vAg~ 119 (266)
T TIGR03465 77 ARRF-----------------------------DL-----PQEDFLEVIDGMEMDLE---QTRYPDFAELDLYCDRVAGA 119 (266)
T ss_pred HHHc-----------------------------CC-----CHHHHHHHHHHHHHHcC---CCCCCCHHHHHHHHHHhHHH
Confidence 2222 11 12345666666653332 44578999988888888776
Q ss_pred hHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccccCCCcchhhhhhhcCCCCHH---------HHHH
Q 045043 356 ELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKTASSILCYMHETGLSEE---------IARQ 426 (490)
Q Consensus 356 ~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~krG~~~n~V~cyMke~gvS~E---------eA~~ 426 (490)
...+++-.+ |.. ++.........-.-..+++++--+-.|+. +|-+ -.=.=-|.++|+|.+ ...+
T Consensus 120 vg~l~~~ll--g~~-~~~~~~~a~~lG~AlqltnilRdv~eD~~---~gR~-ylP~~~l~~~gv~~~~l~~~~~~~~~~~ 192 (266)
T TIGR03465 120 VGRLSARIF--GAT-DARTLEYAHHLGRALQLTNILRDVGEDAR---RGRI-YLPAEELQRFGVPAADILEGRYSPALAA 192 (266)
T ss_pred HHHHHHHHh--CCC-ChhHHHHHHHHHHHHHHHHHHHHhHHHHh---CCCe-ecCHHHHHHcCCCHHHhcCCCCCHHHHH
Confidence 655544444 321 22323322222222233333333333432 5543 000113577888876 3345
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhh
Q 045043 427 HLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLAR 463 (490)
Q Consensus 427 ~i~~~i~~~wk~ln~e~l~~~~~~p~~~~~~~~n~aR 463 (490)
-+..+++.+..-+.+..--.. .+|......++-.+.
T Consensus 193 ~~~~l~~~A~~~l~~a~~~~~-~~p~~~~~~~~~~~~ 228 (266)
T TIGR03465 193 LCRFQAERARAHYAEADALLP-ACDRRAQRAARAMAA 228 (266)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-hCCHhhhHHHHHHHH
Confidence 556666666655554432222 577654444443333
No 15
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=90.80 E-value=19 Score=35.87 Aligned_cols=210 Identities=16% Similarity=0.133 Sum_probs=104.4
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCH-----HHHHHHHHHhhhcCcccccCCChhHHHHHHHHHH
Q 045043 200 CFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTL-----DELELFTYAVERWDINAVNDLPNYMKLSFLALYN 274 (490)
Q Consensus 200 ~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~-----eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~ 274 (490)
.|+++.-..+ ...|..+.-+-++.-.+||+=|..... ..|+-+-+++..-.... -|. .++..+|..
T Consensus 13 sf~~a~~~lp----~~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~~~---~~~--~pv~~al~~ 83 (265)
T cd00683 13 SFYLASRLLP----PELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYWGG---APT--HPVLRALAD 83 (265)
T ss_pred cHHHHHHhCC----HHHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHcCC---CCC--ChHHHHHHH
Confidence 3555554443 456777778888888999999964322 23334444433311100 010 133333333
Q ss_pred HHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccc
Q 045043 275 TINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSS 354 (490)
Q Consensus 275 ~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg 354 (490)
+..+. + --++.+.+++.++-.... ....||++|.......+.|
T Consensus 84 ~~~~~-----------------------------~-----l~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg 126 (265)
T cd00683 84 LARRY-----------------------------G-----IPREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAG 126 (265)
T ss_pred HHHHc-----------------------------C-----CCHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHH
Confidence 33322 1 112445667777664444 4567899888888877777
Q ss_pred hhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccccCCC--cchhhhhhhcCCCCHHHHH-------
Q 045043 355 GELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKT--ASSILCYMHETGLSEEIAR------- 425 (490)
Q Consensus 355 ~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~krG~~--~n~V~cyMke~gvS~EeA~------- 425 (490)
....+++-.++.+ -+++......+.-.-..+++++=-+-.|.. +|-+ +. =-|.++|+|.++-.
T Consensus 127 ~vg~l~~~i~~~~--~~~~~~~~A~~lG~AlqltnilRdv~eD~~---~gR~YlP~---d~l~~~gv~~~~l~~~~~~~~ 198 (265)
T cd00683 127 VVGLMLLRVFGAS--SDEAALERARALGLALQLTNILRDVGEDAR---RGRIYLPR---EELARFGVTLEDLLAPENSPA 198 (265)
T ss_pred HHHHHHHHHhCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCCcCCH---HHHHHcCCCHHHHcCCCCCHH
Confidence 6555544444321 123333332222233344444434444431 5542 22 13678898876632
Q ss_pred --HHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhh
Q 045043 426 --QHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARI 464 (490)
Q Consensus 426 --~~i~~~i~~~wk~ln~e~l~~~~~~p~~~~~~~~n~aR~ 464 (490)
.-+..+++.+.+-+....-... .+|....-.++-++.+
T Consensus 199 ~~~~~~~~~~~A~~~~~~a~~~~~-~lp~~~~~~~~~~~~~ 238 (265)
T cd00683 199 FRALLRRLIARARAHYREALAGLA-ALPRRSRFCVRAAAML 238 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-hCCHhhHHHHHHHHHH
Confidence 4445555555555544332222 5775555444444443
No 16
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=78.91 E-value=25 Score=33.87 Aligned_cols=85 Identities=18% Similarity=0.154 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhccc-ccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHH
Q 045043 313 IPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWR-SSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTI 391 (490)
Q Consensus 313 ~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~-Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i 391 (490)
...+.+....++.+...+..|... ..||.++|++.... |++....++....+.+.. +++..+. ..++.+..+..
T Consensus 87 ~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~lG~a 161 (236)
T cd00867 87 LELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA-DDEQAEA---LKDYGRALGLA 161 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc-CHHHHHH---HHHHHHHHHHH
Confidence 556677888999999999988654 57999999999888 666544433333222322 2332322 35667788888
Q ss_pred HHHhhcccccc
Q 045043 392 FRLSNDLATSK 402 (490)
Q Consensus 392 ~RL~NDI~S~k 402 (490)
.-+.||+..+.
T Consensus 162 ~Qi~dd~~D~~ 172 (236)
T cd00867 162 FQLTDDLLDVF 172 (236)
T ss_pred HHHHHHhcccc
Confidence 88999998876
No 17
>PLN02632 phytoene synthase
Probab=76.08 E-value=1e+02 Score=32.03 Aligned_cols=118 Identities=12% Similarity=0.127 Sum_probs=64.7
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCH----HHHHHHHHHhhh-cCcccccCCChhHHHHHHHHHHH
Q 045043 201 FIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTL----DELELFTYAVER-WDINAVNDLPNYMKLSFLALYNT 275 (490)
Q Consensus 201 yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~----eEl~~ft~av~r-Wd~~~~~~lPe~mk~~~~al~~~ 275 (490)
|+++.-..+ ...|..+.-+-.+.-.+||+=|..... ..|..+-+.+.+ .++. |. .++..+|.++
T Consensus 63 Fyla~~lLP----~~~R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~~~g~-----~~--~pv~~aL~~~ 131 (334)
T PLN02632 63 FYLGTLLMT----PERRKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDLFDGR-----PY--DMLDAALADT 131 (334)
T ss_pred HHHHHHhCC----HHHHHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHHhCCC-----CC--ChHHHHHHHH
Confidence 444444443 245667777888889999999954322 234444444433 1111 11 1345555555
Q ss_pred HHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccch
Q 045043 276 INEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSG 355 (490)
Q Consensus 276 ~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~ 355 (490)
..+. +. -++.+.+++.++..... ....+|++|+......+.|.
T Consensus 132 ~~~~-----------------------------~L-----~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Ycy~vAgt 174 (334)
T PLN02632 132 VSKF-----------------------------PL-----DIQPFRDMIEGMRMDLV---KSRYENFDELYLYCYYVAGT 174 (334)
T ss_pred HHHC-----------------------------CC-----ChHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHhhHH
Confidence 5444 10 12334566666553322 34568999999888877776
Q ss_pred hHHHHHHHHhh
Q 045043 356 ELSLVHSYFLV 366 (490)
Q Consensus 356 ~~ll~~~~~~~ 366 (490)
.-.+++..++.
T Consensus 175 VG~l~l~vlg~ 185 (334)
T PLN02632 175 VGLMSVPVMGI 185 (334)
T ss_pred HHHHHHHHhCC
Confidence 55555544443
No 18
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=66.01 E-value=84 Score=31.14 Aligned_cols=87 Identities=15% Similarity=0.142 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTI 391 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i 391 (490)
+...+.+....++.+-..+..|... ..||.++|++....-+|.....+....++--..+++..+. .-++-+..+..
T Consensus 109 ~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~---l~~~g~~lG~a 184 (259)
T cd00685 109 ALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAGADEEEAEA---LKRFGRNLGLA 184 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 4556667788888888888888754 5799999999987777765443322222111123443332 34566777778
Q ss_pred HHHhhcccccc
Q 045043 392 FRLSNDLATSK 402 (490)
Q Consensus 392 ~RL~NDI~S~k 402 (490)
.-+.||+..+.
T Consensus 185 fQi~DD~ld~~ 195 (259)
T cd00685 185 FQIQDDILDLF 195 (259)
T ss_pred HHHHHHhhccc
Confidence 88889987765
No 19
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=60.74 E-value=1.5e+02 Score=30.61 Aligned_cols=87 Identities=10% Similarity=0.224 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTI 391 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i 391 (490)
+...+.+....++.+-+.+..|... ..+|.++|++.-..=+|.-+..+...-++-...+++..+. .-++-...++.
T Consensus 134 ~~~~~~~~~~~~~~Gq~~~~~~~~~-~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~---l~~~G~~lG~a 209 (322)
T TIGR02749 134 VVKLISKVITDFAEGEIKQGLNQFD-SDLSLEDYLEKSFYKTASLVAASSKAAAVLSDVPSQVAND---LYEYGKHLGLA 209 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcCcCHHHHHH---HHHHHHHHHHH
Confidence 4556677777888888877776533 3479999998766555544322211111112234444433 35666788888
Q ss_pred HHHhhcccccc
Q 045043 392 FRLSNDLATSK 402 (490)
Q Consensus 392 ~RL~NDI~S~k 402 (490)
.-+.||+..+.
T Consensus 210 FQi~DDild~~ 220 (322)
T TIGR02749 210 FQVVDDILDFT 220 (322)
T ss_pred HHHHHHhccCC
Confidence 88899998765
No 20
>PLN02857 octaprenyl-diphosphate synthase
Probab=56.66 E-value=1.5e+02 Score=32.06 Aligned_cols=87 Identities=11% Similarity=0.213 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTI 391 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i 391 (490)
+...+.+...+++.+-+.+..+.. +..+|.++|++....-+|..+..+...-+.--..+++..+. .-++-+..++.
T Consensus 228 ~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~---l~~fG~~LGiA 303 (416)
T PLN02857 228 VIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQ---MYEYGKNLGLA 303 (416)
T ss_pred HHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHH
Confidence 355666677777877777777764 34579999999866666644332211111112234554443 35566777788
Q ss_pred HHHhhcccccc
Q 045043 392 FRLSNDLATSK 402 (490)
Q Consensus 392 ~RL~NDI~S~k 402 (490)
.-+.||+..+.
T Consensus 304 FQI~DDiLD~~ 314 (416)
T PLN02857 304 FQVVDDILDFT 314 (416)
T ss_pred HHHHHHHHhhc
Confidence 88888888775
No 21
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=55.43 E-value=8.6 Score=35.87 Aligned_cols=39 Identities=21% Similarity=0.535 Sum_probs=30.7
Q ss_pred cCCCcchhhhhhhcC-CCCHHHHHHHHHHH------HHHHHHHHHH
Q 045043 403 IGKTASSILCYMHET-GLSEEIARQHLRNM------IDSCWKKMNK 441 (490)
Q Consensus 403 rG~~~n~V~cyMke~-gvS~EeA~~~i~~~------i~~~wk~ln~ 441 (490)
||-.+..|.||+-++ +.|.++|.++++++ ....|+-+++
T Consensus 120 RtRSaTvV~cYLmq~~~wtpe~A~~~vr~iRp~VlL~~~Qw~~l~e 165 (183)
T KOG1719|consen 120 RTRSATVVACYLMQHKNWTPEAAVEHVRKIRPRVLLRPAQWDVLKE 165 (183)
T ss_pred CccchhhhhhhhhhhcCCCHHHHHHHHHhcCcceeecHHHHHHHHH
Confidence 888889999999886 99999999999983 2345555443
No 22
>PLN02890 geranyl diphosphate synthase
Probab=52.60 E-value=2.6e+02 Score=30.26 Aligned_cols=88 Identities=13% Similarity=0.096 Sum_probs=57.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHH
Q 045043 311 IIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPST 390 (490)
Q Consensus 311 ~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~ 390 (490)
.++..+.++...++.+-+.+..|.. ...+|.++|++....-+|.-+..+...-++--..+++..+.+ -.+-+..++
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l---~~fG~~lGl 302 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAGQTAEVAVLA---FEYGRNLGL 302 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHH
Confidence 3466778888899999999998874 356899999987655555443322211111112345544443 456677888
Q ss_pred HHHHhhcccccc
Q 045043 391 IFRLSNDLATSK 402 (490)
Q Consensus 391 i~RL~NDI~S~k 402 (490)
..-+.||+..+.
T Consensus 303 AFQI~DDiLD~~ 314 (422)
T PLN02890 303 AFQLIDDVLDFT 314 (422)
T ss_pred HHHHHHHHHhhc
Confidence 888899998875
No 23
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=51.97 E-value=11 Score=36.40 Aligned_cols=42 Identities=31% Similarity=0.199 Sum_probs=29.8
Q ss_pred HHHhhcccccc-----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHH
Q 045043 392 FRLSNDLATSK-----IGKTASSILCYMHETGLSEEIARQHLRNMID 433 (490)
Q Consensus 392 ~RL~NDI~S~k-----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~ 433 (490)
-+|--++..+| |.-+.-+=.+.|++||+|++||+++++++--
T Consensus 128 ~~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 128 RALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33445555555 4444455567999999999999999998643
No 24
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=46.73 E-value=13 Score=28.19 Aligned_cols=28 Identities=29% Similarity=0.191 Sum_probs=21.2
Q ss_pred CcchhhhhhhcCCCCHHHHHHHHHHHHH
Q 045043 406 TASSILCYMHETGLSEEIARQHLRNMID 433 (490)
Q Consensus 406 ~~n~V~cyMke~gvS~EeA~~~i~~~i~ 433 (490)
+.-++.+.|..+|+|+++|.+.+++.-.
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am 42 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAM 42 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3456788999999999999999988544
No 25
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=46.42 E-value=3.2e+02 Score=28.15 Aligned_cols=85 Identities=12% Similarity=0.222 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPS 389 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~ 389 (490)
....+.+....++.+-..+..|.. +..+|.++|++.-..-+|..+..+ ...| ++ ..+++..+. .-++-+..+
T Consensus 130 ~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~-~~~ga~~a-g~~~~~~~~---l~~~g~~lG 203 (319)
T TIGR02748 130 AHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAAS-CQLGAIAS-GANEAIVKK---LYWFGYYVG 203 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHH
Confidence 355667777888888888888753 345799999988766666543322 2222 11 123443333 245667777
Q ss_pred HHHHHhhcccccc
Q 045043 390 TIFRLSNDLATSK 402 (490)
Q Consensus 390 ~i~RL~NDI~S~k 402 (490)
+..-+.||+..+.
T Consensus 204 ~aFQI~DDilD~~ 216 (319)
T TIGR02748 204 MSYQITDDILDFV 216 (319)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888887664
No 26
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=42.88 E-value=17 Score=24.14 Aligned_cols=18 Identities=44% Similarity=0.623 Sum_probs=14.8
Q ss_pred hhhhcCCCCHHHHHHHHH
Q 045043 412 CYMHETGLSEEIARQHLR 429 (490)
Q Consensus 412 cyMke~gvS~EeA~~~i~ 429 (490)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 599999999999766654
No 27
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=42.14 E-value=4.1e+02 Score=27.44 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTI 391 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i 391 (490)
....+.+....++.+-+.+-.|.... +|.++|++.-..=+|.-+..+...-++--..+++..+.+ -.+-+..++.
T Consensus 135 ~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l---~~~g~~lGla 209 (322)
T COG0142 135 AIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAGADEELLEAL---EDYGRNLGLA 209 (322)
T ss_pred HHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHhhHH
Confidence 46677788889999999888887655 999999998666665443332222111112234555543 5667888888
Q ss_pred HHHhhcccccc-----cCCC---------cchhhhhhhcCCC
Q 045043 392 FRLSNDLATSK-----IGKT---------ASSILCYMHETGL 419 (490)
Q Consensus 392 ~RL~NDI~S~k-----rG~~---------~n~V~cyMke~gv 419 (490)
.-+.||+..+. -|+. .+...++.-+.+-
T Consensus 210 FQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~ 251 (322)
T COG0142 210 FQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKAN 251 (322)
T ss_pred HHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCc
Confidence 88999998887 2321 4666666666543
No 28
>CHL00151 preA prenyl transferase; Reviewed
Probab=41.09 E-value=3.8e+02 Score=27.65 Aligned_cols=85 Identities=11% Similarity=0.209 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-hcCCCcHHHHHhhhchhhhHHHHHHH
Q 045043 313 IPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL-VSRSINKKALESLGKYHNLIRWPSTI 391 (490)
Q Consensus 313 ~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~-~g~~l~~e~~e~~~~~p~ii~~s~~i 391 (490)
...+.+....++.+-+.+..|.. ..-+|.++|+.....=+|..+-.+...-+ ++. .+++..+. .-.+-...++.
T Consensus 136 ~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~G~~lG~a 210 (323)
T CHL00151 136 VKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD-ADEKDHND---FYLYGKHLGLA 210 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHHH
Confidence 45566677777777766666643 33479999999754445443322211111 122 23443333 35666788888
Q ss_pred HHHhhcccccc
Q 045043 392 FRLSNDLATSK 402 (490)
Q Consensus 392 ~RL~NDI~S~k 402 (490)
.-+.||+..+.
T Consensus 211 FQi~DDilD~~ 221 (323)
T CHL00151 211 FQIIDDVLDIT 221 (323)
T ss_pred HHHHHHHhhcc
Confidence 88899998775
No 29
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.71 E-value=46 Score=27.20 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=28.9
Q ss_pred hHHHHHhcCCccccHHHHHHHHH---hchhc---Ccccc----------CCCccccccchhhHHHHHHHhhc
Q 045043 31 LIDDVQRLGLGYRFENEIKRALH---RILSW---QGYDH----------PEGNFTETVHKDVKGVLSLNEAS 86 (490)
Q Consensus 31 liD~lqrLGi~~hF~~EI~~~L~---~i~~~---~Gy~v----------~~g~F~~~~~~dv~~llsLyeAs 86 (490)
+|++++|| ++|++.+=+ .||.. .||++ ..+. .-...-..+|.||.++
T Consensus 9 ~ieRiErL------EeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d~---~~r~E~eail~~Y~~A 71 (74)
T PF10073_consen 9 FIERIERL------EEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKKDP---DEREEEEAILDLYMSA 71 (74)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCCH---hHHHHHHHHHHHHHHH
Confidence 57777777 566655544 45664 49998 2221 1124456789999875
No 30
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=28.31 E-value=43 Score=29.90 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.6
Q ss_pred hhhhhhcCCCCHHHHHHHHHH
Q 045043 410 ILCYMHETGLSEEIARQHLRN 430 (490)
Q Consensus 410 V~cyMke~gvS~EeA~~~i~~ 430 (490)
|.+.|.|.|||.|+|++.+.+
T Consensus 88 IkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 88 IKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 788999999999999988764
No 31
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=27.63 E-value=22 Score=30.54 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=26.3
Q ss_pred hHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhccCCChhhHhhhh
Q 045043 76 VKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHS 125 (490)
Q Consensus 76 v~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~a 125 (490)
+.|+++|||-|-++--=|++||+-++ .+.|+|+|+..|-..
T Consensus 1 v~~yYElYRrs~ig~~L~dalD~lis---------~g~isp~lam~vLet 41 (113)
T COG5123 1 VPGYYELYRRSMIGKVLEDALDELIS---------AGVISPNLAMHVLET 41 (113)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHh---------cCCcCHHHHHHHHHH
Confidence 45899999999886545667766542 134566666555443
No 32
>smart00463 SMR Small MutS-related domain.
Probab=27.03 E-value=76 Score=25.38 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 417 TGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 417 ~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
||.|.++|+..+...++++++.-.
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~~ 30 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKGL 30 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCC
Confidence 799999999999999998887654
No 33
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=25.73 E-value=71 Score=25.78 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 045043 417 TGLSEEIARQHLRNMIDSCWKKMNKEWV 444 (490)
Q Consensus 417 ~gvS~EeA~~~i~~~i~~~wk~ln~e~l 444 (490)
||.+.+||+..+.+.+.++++.-...+.
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~~~~ 31 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIRELR 31 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHSEEE
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 7999999999999999999977665554
No 34
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=25.69 E-value=7.5e+02 Score=25.50 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=54.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhh-cCCCcHHHHHhhhchhhhHHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLV-SRSINKKALESLGKYHNLIRWPST 390 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~-g~~l~~e~~e~~~~~p~ii~~s~~ 390 (490)
+...+.++...++.+-..+..|... ..+|.++|++....-+|..+-.+ ...|. --..+++..+. .-.+-+..++
T Consensus 131 ~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~i~~KTa~lf~~~-~~~ga~lag~~~~~~~~---l~~~g~~lG~ 205 (323)
T PRK10888 131 VLEVMSEAVNVIAEGEVLQLMNVND-PDITEENYMRVIYSKTARLFEAA-AQCSGILAGCTPEQEKG---LQDYGRYLGT 205 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHH---HHHHHHHHHH
Confidence 4556677778888888888877543 35899999998766666543322 22221 01224443333 3456677788
Q ss_pred HHHHhhcccccc
Q 045043 391 IFRLSNDLATSK 402 (490)
Q Consensus 391 i~RL~NDI~S~k 402 (490)
..-+.||+..+.
T Consensus 206 aFQi~DD~ld~~ 217 (323)
T PRK10888 206 AFQLIDDLLDYS 217 (323)
T ss_pred HHHHHHHhhccc
Confidence 888889998775
No 35
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=24.08 E-value=2.5e+02 Score=24.83 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHh
Q 045043 418 GLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLA 462 (490)
Q Consensus 418 gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~~p~~~~~~~~n~a 462 (490)
|.+..++++.+.. ...-|--|-.++..|.+++|..++.-+++++
T Consensus 39 ~~~~~~~~eAL~~-NrrLWt~~~~Dl~~p~N~LP~eLRa~lisL~ 82 (115)
T PRK12793 39 GAYSREAIEALYF-TRRLWTVLIEDLGSPENALPEELRADLISIG 82 (115)
T ss_pred CCChHHHHHHHHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence 4444565666655 7778999999999988899999999999887
No 36
>smart00400 ZnF_CHCC zinc finger.
Probab=23.60 E-value=64 Score=24.16 Aligned_cols=25 Identities=28% Similarity=0.161 Sum_probs=20.9
Q ss_pred CCCcchhhhhhhcCCCCHHHHHHHH
Q 045043 404 GKTASSILCYMHETGLSEEIARQHL 428 (490)
Q Consensus 404 G~~~n~V~cyMke~gvS~EeA~~~i 428 (490)
|.-.+.|..+|+-+|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 4445779999999999999999875
No 37
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=21.41 E-value=1.8e+02 Score=24.62 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=8.8
Q ss_pred cCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHH
Q 045043 237 YGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINE 278 (490)
Q Consensus 237 ~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e 278 (490)
||+ +....+.+....|.......+-..+..++..|...+++
T Consensus 10 yg~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~ 50 (118)
T PF07739_consen 10 YGD-EAYAESEERLASLSKEEWQELQKEWDELFAELAALMEE 50 (118)
T ss_dssp ------------------------TTHHHHHHHHHHHHHHHH
T ss_pred HCh-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444 33333333333344444444444455555555444444
No 38
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=21.10 E-value=62 Score=31.73 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=23.4
Q ss_pred cCCCcchhhhhh-hcCCCCHHHHHHHHHH
Q 045043 403 IGKTASSILCYM-HETGLSEEIARQHLRN 430 (490)
Q Consensus 403 rG~~~n~V~cyM-ke~gvS~EeA~~~i~~ 430 (490)
-|-....|.||| +++|.|..||++.++.
T Consensus 158 lGRTG~liAc~lmy~~g~ta~eaI~~lR~ 186 (225)
T KOG1720|consen 158 LGRTGTLIACYLMYEYGMTAGEAIAWLRI 186 (225)
T ss_pred CCchhHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 566678899997 6689999999998875
Done!