Query 045043
Match_columns 490
No_of_seqs 170 out of 838
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045043.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045043hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 3E-143 1E-147 1156.9 45.0 466 2-489 47-547 (554)
2 3n0f_A Isoprene synthase; terp 100.0 5E-143 2E-147 1157.3 42.7 466 2-489 41-545 (555)
3 3m00_A Aristolochene synthase; 100.0 2E-142 6E-147 1150.5 43.2 465 2-489 43-543 (550)
4 2ong_A 4S-limonene synthase; m 100.0 1E-136 5E-141 1110.9 48.0 465 2-489 28-537 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 1E-136 4E-141 1111.1 44.9 465 2-489 32-543 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 3E-136 1E-140 1111.5 41.8 464 2-489 61-563 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 1E-128 4E-133 1084.4 41.5 443 24-489 297-810 (817)
8 3s9v_A Abietadiene synthase, c 100.0 2E-128 6E-133 1079.8 41.3 442 24-489 269-779 (785)
9 3p5p_A Taxadiene synthase; cla 100.0 2E-128 8E-133 1075.8 42.0 441 24-489 245-749 (764)
10 3pya_A ENT-copalyl diphosphate 100.0 6.7E-94 2.3E-98 792.1 33.0 411 4-488 220-713 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.4E-49 4.8E-54 405.8 17.3 247 167-443 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 2.1E-47 7.2E-52 383.1 21.0 238 169-443 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 5.5E-46 1.9E-50 376.6 20.6 242 165-443 23-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 1.5E-43 5.2E-48 368.8 20.2 239 176-442 65-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 8E-30 2.7E-34 269.1 19.9 238 176-443 134-390 (433)
16 1yyq_A Trichodiene synthase; t 99.6 1E-15 3.5E-20 158.5 14.5 248 172-465 30-295 (374)
17 3acx_A Dehydrosqualene synthas 91.9 8.4 0.00029 37.7 17.9 202 190-441 14-231 (293)
18 4hd1_A Squalene synthase HPNC; 91.7 11 0.00036 37.0 19.8 177 190-423 15-199 (294)
19 3ipi_A Geranyltranstransferase 82.0 12 0.00042 36.8 12.0 136 312-463 128-277 (295)
20 3lmd_A Geranylgeranyl pyrophos 78.7 21 0.00073 36.1 12.8 85 311-402 160-246 (360)
21 3oyr_A Trans-isoprenyl diphosp 65.2 86 0.003 31.4 13.5 86 311-402 151-238 (345)
22 3mzv_A Decaprenyl diphosphate 64.5 1E+02 0.0036 30.6 14.0 86 311-402 139-226 (341)
23 2ftz_A Geranyltranstransferase 62.2 68 0.0023 31.2 11.8 116 312-441 135-264 (284)
24 3vj8_A Squalene synthase; farn 61.0 1.4E+02 0.0046 29.8 21.1 63 186-252 9-79 (343)
25 3rmg_A Octaprenyl-diphosphate 58.8 1.1E+02 0.0039 30.2 13.0 86 311-402 133-220 (334)
26 3ts7_A Geranyltranstransferase 57.4 81 0.0028 31.3 11.5 108 321-440 158-281 (324)
27 3pko_A Geranylgeranyl pyrophos 52.9 1.7E+02 0.0057 29.0 13.1 85 312-402 144-230 (334)
28 1rtr_A Geranyltranstransferase 50.9 85 0.0029 30.7 10.4 108 321-441 148-271 (301)
29 3p8l_A Geranyltranstransferase 50.4 1.2E+02 0.0042 29.6 11.5 108 321-441 156-279 (302)
30 3p8r_A Geranyltranstransferase 49.8 65 0.0022 31.6 9.3 108 321-440 158-281 (302)
31 3lsn_A Geranyltranstransferase 49.4 1.2E+02 0.0041 29.7 11.2 107 322-440 153-275 (304)
32 4dhd_A Polyprenyl synthetase; 49.1 91 0.0031 31.3 10.5 87 312-402 133-231 (358)
33 3lom_A Geranyltranstransferase 48.9 1.2E+02 0.0041 29.9 11.1 109 321-440 158-282 (313)
34 3m0g_A Farnesyl diphosphate sy 48.7 56 0.0019 32.0 8.6 112 315-440 139-268 (297)
35 3npk_A Geranyltranstransferase 47.9 2E+02 0.007 27.9 12.7 108 320-440 144-265 (291)
36 2h8o_A Geranyltranstransferase 45.4 1E+02 0.0035 30.7 10.1 107 321-440 192-314 (335)
37 4f62_A Geranyltranstransferase 41.3 1.3E+02 0.0045 29.7 10.1 107 322-440 152-274 (317)
38 4hrt_B Hemoglobin B chain; oxy 36.1 1.8E+02 0.0062 24.9 9.1 125 171-326 15-147 (152)
39 1rqj_A Geranyltranstransferase 36.0 1.7E+02 0.0058 28.4 9.8 108 321-441 152-276 (299)
40 1wy0_A Geranylgeranyl pyrophos 36.0 1.3E+02 0.0043 29.9 9.0 85 312-402 138-224 (342)
41 3apz_A Geranyl diphosphate syn 35.6 1.6E+02 0.0053 29.3 9.7 85 312-402 154-240 (348)
42 1pd3_A Nonstructural protein N 35.3 26 0.0009 25.5 2.7 32 6-38 17-48 (58)
43 3llw_A Geranyltranstransferase 34.9 1.4E+02 0.0048 29.4 9.0 109 320-440 158-280 (311)
44 3uca_A Geranyltranstransferase 33.4 2.7E+02 0.0091 27.5 10.9 109 321-441 180-304 (324)
45 3nf2_A Putative polyprenyl syn 30.5 1.5E+02 0.0051 29.7 8.5 86 312-402 144-230 (352)
46 3pde_A Farnesyl-diphosphate sy 29.7 3.2E+02 0.011 26.7 10.7 107 321-440 155-277 (309)
47 2e8v_A Geranylgeranyl pyrophos 27.2 1.5E+02 0.005 29.5 7.8 86 312-402 132-220 (340)
48 2q80_A Geranylgeranyl pyrophos 25.6 3.1E+02 0.011 26.5 9.7 84 311-402 111-195 (301)
49 3aqb_B Component B of hexapren 24.4 2.3E+02 0.008 27.7 8.6 87 312-402 131-217 (325)
50 3fau_A NEDD4-binding protein 2 23.9 62 0.0021 25.1 3.4 23 417-439 6-28 (82)
51 2j1p_A Geranylgeranyl pyrophos 23.7 91 0.0031 30.3 5.3 108 322-440 161-271 (293)
52 1sct_A Hemoglobin II (carbonmo 20.6 3.8E+02 0.013 22.5 10.6 126 170-326 12-145 (150)
53 3ic3_A Putative pyruvate dehyd 20.0 85 0.0029 26.0 3.5 44 390-447 48-91 (101)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=3.4e-143 Score=1156.95 Aligned_cols=466 Identities=35% Similarity=0.598 Sum_probs=444.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhc------C--------------cc
Q 045043 2 KYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSW------Q--------------GY 61 (490)
Q Consensus 2 ~~~~~~~~lk~~v~~~l~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~------~--------------Gy 61 (490)
.+.+|+++||+|||+||.++.+|++++|++||+||||||+|||++||+++|++||+. + ||
T Consensus 47 ~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy 126 (554)
T 3g4d_A 47 ETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGY 126 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 467899999999999997633499999999999999999999999999999999951 1 99
Q ss_pred cc----------CCCccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhccCCChhhHhhhhcccccc
Q 045043 62 DH----------PEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRH 131 (490)
Q Consensus 62 ~v----------~~g~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~ 131 (490)
+| ++|+|++++.+||+||||||||||+++|||+|||||+.||++||++.++.++++|+++|+|||++|||
T Consensus 127 ~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~ 206 (554)
T 3g4d_A 127 NVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIR 206 (554)
T ss_dssp CCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTT
T ss_pred CCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCcc
Confidence 99 66899999999999999999999999999999999999999999999887888999999999999999
Q ss_pred ccchhhHHHHHHHHhc-ccCCChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHhccccC
Q 045043 132 YRMRRLEVRWYTEAYR-KKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPK 210 (490)
Q Consensus 132 ~~~~Rle~r~yi~~Y~-~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~~fe 210 (490)
+++||||||+||++|+ ++++|++||||||||||+||++||+||++++|||+++||.+++||||||++|||||++|++||
T Consensus 207 ~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~fe 286 (554)
T 3g4d_A 207 RGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFE 286 (554)
T ss_dssp TSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCS
T ss_pred CCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCC
Confidence 9999999999999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045043 211 PQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISF 290 (490)
Q Consensus 211 P~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~ 290 (490)
|+||.+|+++||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|+|+++|+
T Consensus 287 P~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~----------- 355 (554)
T 3g4d_A 287 PQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM----------- 355 (554)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHH-----------
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCC
Q 045043 291 PALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSI 370 (490)
Q Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l 370 (490)
++++.++||.++++|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++||+.+
T Consensus 356 ----------~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~l 425 (554)
T 3g4d_A 356 ----------VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIV 425 (554)
T ss_dssp ----------HHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTS
T ss_pred ----------HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCC
Confidence 8899888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045043 371 NKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVND 446 (490)
Q Consensus 371 ~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~ 446 (490)
|+++++|+.++|+++++++.|+||+|||+|++ +|+++|+|+|||+|||+|+|+|++++++||+++||+||++|+++
T Consensus 426 t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~ 505 (554)
T 3g4d_A 426 TPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP 505 (554)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred CCCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043 447 QHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 447 ~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~ 489 (490)
+ ++|+||+++++|+||+++++|+++||||.|+..+|++|+++
T Consensus 506 ~-~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~l 547 (554)
T 3g4d_A 506 T-EMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSL 547 (554)
T ss_dssp C-SSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Confidence 7 89999999999999999999999999999988899999986
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=4.6e-143 Score=1157.26 Aligned_cols=466 Identities=58% Similarity=0.996 Sum_probs=447.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhc---------C-------------
Q 045043 2 KYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSW---------Q------------- 59 (490)
Q Consensus 2 ~~~~~~~~lk~~v~~~l~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~---------~------------- 59 (490)
.+.+|+++||+|||+||.+..+|++++|++||+||||||+|||++||+++|++||+. +
T Consensus 41 ~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~DL~~~Al~FRLLR~ 120 (555)
T 3n0f_A 41 VYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQ 120 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHh
Confidence 467899999999999997532279999999999999999999999999999999962 1
Q ss_pred -cccc----------CCCccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhh-ccCCChhhHhhhhcc
Q 045043 60 -GYDH----------PEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKT-KLNPYMSELVSHSLE 127 (490)
Q Consensus 60 -Gy~v----------~~g~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~-~~~~~l~~~V~~aL~ 127 (490)
||+| ++|+|++++++||+||||||||||++||||+|||||+.||++||++.+. .++++|+++|+|||+
T Consensus 121 hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~ 200 (555)
T 3n0f_A 121 HGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKIGKELAEQVNHALE 200 (555)
T ss_dssp TTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHH
T ss_pred cCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHhc
Confidence 9999 6689999999999999999999999999999999999999999998764 568889999999999
Q ss_pred ccccccchhhHHHHHHHHhc-ccCCChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHhc
Q 045043 128 LPRHYRMRRLEVRWYTEAYR-KKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVG 206 (490)
Q Consensus 128 ~P~~~~~~Rle~r~yi~~Y~-~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a 206 (490)
+|||+++||||||+||++|+ ++++|++||||||||||+||++||+||++++|||+++||.+++||||||++|||||++|
T Consensus 201 ~P~~~~l~Rlear~yI~~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~ 280 (555)
T 3n0f_A 201 LPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVG 280 (555)
T ss_dssp SCTTTSCHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHH
T ss_pred CCcccCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHH
Confidence 99999999999999999999 88899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhh
Q 045043 207 MVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQ 286 (490)
Q Consensus 207 ~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~ 286 (490)
++|||+||.+|++|||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|+|+++|+
T Consensus 281 ~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~------- 353 (555)
T 3n0f_A 281 VAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEI------- 353 (555)
T ss_dssp HCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHH-------
T ss_pred hhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhh
Q 045043 287 HISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLV 366 (490)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~ 366 (490)
+.++.++||+++++|++++|+++++||++||+|+++||+||+||||+||.+|+|+++++++++++|
T Consensus 354 --------------~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m 419 (555)
T 3n0f_A 354 --------------AYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV 419 (555)
T ss_dssp --------------HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH
T ss_pred --------------HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045043 367 SRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKE 442 (490)
Q Consensus 367 g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e 442 (490)
|+.+|+++++|+.++|+++++++.|+||+|||+|++ +|+++|+|+|||+|||+|+|+|++++++||+++||+||++
T Consensus 420 g~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e 499 (555)
T 3n0f_A 420 VQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKE 499 (555)
T ss_dssp CSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HhcCCCCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043 443 WVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 443 ~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~ 489 (490)
|++++ ++|+||+++++|+||+++++|+++||||.|+..+|++|+++
T Consensus 500 ~l~~~-~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~l 545 (555)
T 3n0f_A 500 KLGGS-LFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSV 545 (555)
T ss_dssp HHSCC-SSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHH
T ss_pred HhcCC-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHH
Confidence 99987 89999999999999999999999999999977899999986
No 3
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.8e-142 Score=1150.48 Aligned_cols=465 Identities=33% Similarity=0.607 Sum_probs=445.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhcC-------------------ccc
Q 045043 2 KYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSWQ-------------------GYD 62 (490)
Q Consensus 2 ~~~~~~~~lk~~v~~~l~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~-------------------Gy~ 62 (490)
.+.+|+++||+|||+||.++.+|++++|++||+||||||+|||++||+++|++||+.+ ||+
T Consensus 43 ~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~dl~~~al~FRLLR~hGy~ 122 (550)
T 3m00_A 43 KYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFN 122 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhcCCC
Confidence 4678999999999999975334999999999999999999999999999999999631 999
Q ss_pred c----------CCCccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhccCCChhhHhhhhccccccc
Q 045043 63 H----------PEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKLNPYMSELVSHSLELPRHY 132 (490)
Q Consensus 63 v----------~~g~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~ 132 (490)
| ++|+|++++.+||+||||||||||+++|||+|||||+.||++||++.+++++++|+++|+|||++|||+
T Consensus 123 VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~ 202 (550)
T 3m00_A 123 ISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHK 202 (550)
T ss_dssp CCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTT
T ss_pred CChHHhhhccccCCCccccchhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccC
Confidence 9 678999999999999999999999999999999999999999999998778889999999999999999
Q ss_pred cchhhHHHHHHH-Hhc-ccCCChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHhccccC
Q 045043 133 RMRRLEVRWYTE-AYR-KKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPK 210 (490)
Q Consensus 133 ~~~Rle~r~yi~-~Y~-~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~~fe 210 (490)
++||||||+||+ +|+ ++++|++||||||||||+||++||+||++++|||+++||.+++||||||++|||||++|++||
T Consensus 203 ~l~rlear~yI~~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~fe 282 (550)
T 3m00_A 203 GVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFE 282 (550)
T ss_dssp SCHHHHHHHHHHHTGGGCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCS
T ss_pred CchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCC
Confidence 999999999999 999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 045043 211 PQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISF 290 (490)
Q Consensus 211 P~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~ 290 (490)
|+||.+|+++||+++++|++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|+|+++|+
T Consensus 283 P~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~----------- 351 (550)
T 3m00_A 283 PQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDY----------- 351 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHH-----------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHH-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCC
Q 045043 291 PALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSI 370 (490)
Q Consensus 291 ~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l 370 (490)
++++.++||.++++|++++|+++++||++||+|+++||+||+||||+||.+|+|++++++++++|+ +.+
T Consensus 352 ----------~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~l 420 (550)
T 3m00_A 352 ----------EKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSA 420 (550)
T ss_dssp ----------HHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTC
T ss_pred ----------HHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCC
Confidence 888988888899999999999999999999999999999999999999999999999999998877 779
Q ss_pred cHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045043 371 NKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVND 446 (490)
Q Consensus 371 ~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~ 446 (490)
|+++++|+.++|+++++++.|+||+|||+|++ +|+++|+|+|||+|||+|+|+|++++++||+++||+||++++++
T Consensus 421 t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~ 500 (550)
T 3m00_A 421 TEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 500 (550)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred CCCCcHHHHHHHHHHhhhhchhcccC-CCCCCCChhHHHHhhhc
Q 045043 447 QHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 447 ~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~~~~~k~~i~~~ 489 (490)
+ ++|+||+++++|+||+++++|+++ ||||.|++.+|++|+++
T Consensus 501 ~-~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~l 543 (550)
T 3m00_A 501 T-PVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINL 543 (550)
T ss_dssp C-SSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH
Confidence 7 899999999999999999999998 99999987899999986
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=1.4e-136 Score=1110.94 Aligned_cols=465 Identities=42% Similarity=0.751 Sum_probs=452.7
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhc-------------C---------
Q 045043 2 KYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSW-------------Q--------- 59 (490)
Q Consensus 2 ~~~~~~~~lk~~v~~~l~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-------------~--------- 59 (490)
.+.+++++||++||+|+.+.. |++++|++||+||||||||||++||+++|++||+. +
T Consensus 28 ~~~~~~~~Lk~~V~~~~~~~~-d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~~dl~~~al~FR 106 (543)
T 2ong_A 28 KHVIRASELVTLVKMELEKET-DQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFR 106 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHTTTCCCSSCCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc-CHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhhcccccccccccCCHHHHHHHHH
Confidence 478999999999999998877 89999999999999999999999999999999951 1
Q ss_pred -----cccc----------CCCccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhc-c-CCChhhHh
Q 045043 60 -----GYDH----------PEGNFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTK-L-NPYMSELV 122 (490)
Q Consensus 60 -----Gy~v----------~~g~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~-~-~~~l~~~V 122 (490)
||+| ++|+|++++++||+|||||||||||++|||+|||||+.||++||++++.. + +++|+++|
T Consensus 107 lLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V 186 (543)
T 2ong_A 107 LLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRI 186 (543)
T ss_dssp HHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHH
T ss_pred HHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccCCCCcHHHHH
Confidence 9999 77999999999999999999999999999999999999999999999876 5 78999999
Q ss_pred hhhccccccccchhhHHHHHHHHhc-ccCCChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHH
Q 045043 123 SHSLELPRHYRMRRLEVRWYTEAYR-KKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECF 201 (490)
Q Consensus 123 ~~aL~~P~~~~~~Rle~r~yi~~Y~-~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~y 201 (490)
+|||++|||+++||||||+||++|+ ++++|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||
T Consensus 187 ~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Y 266 (543)
T 2ong_A 187 AYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECY 266 (543)
T ss_dssp HHHHHSCTTTSCSTTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHH
T ss_pred HHHHhhhHhccchHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHH
Confidence 9999999999999999999999999 889999999999999999999999999999999999999888999999999999
Q ss_pred HHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHH
Q 045043 202 IWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAY 281 (490)
Q Consensus 202 fw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~ 281 (490)
||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+|+++++|+
T Consensus 267 fw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei-- 344 (543)
T 2ong_A 267 FWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDT-- 344 (543)
T ss_dssp HTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHH
Q 045043 282 DILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVH 361 (490)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~ 361 (490)
+.++.+.||+++++|++++|++++++|++||+|+++||+||++|||+||.+|+|+++++++
T Consensus 345 -------------------~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~ 405 (543)
T 2ong_A 345 -------------------SYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTH 405 (543)
T ss_dssp -------------------HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHH
T ss_pred -------------------HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHH
Q 045043 362 SYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWK 437 (490)
Q Consensus 362 ~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk 437 (490)
++++||+.+|+++++|+.++|+++++++.|+||+|||+|++ +|+++|+|+|||+|||+|+|+|+++++++|+++||
T Consensus 406 ~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk 485 (543)
T 2ong_A 406 IFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWK 485 (543)
T ss_dssp HHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHH-hcCCCCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043 438 KMNKEW-VNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 438 ~ln~e~-l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~ 489 (490)
+||+++ ++++ ++|++|+++++|+||+++++|+++||||.|++.+|++|+++
T Consensus 486 ~ln~e~~l~~~-~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l 537 (543)
T 2ong_A 486 KMNAERVSKDS-PFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRT 537 (543)
T ss_dssp HHHHHHTCSSC-SSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHH
T ss_pred HHHHHhccCCC-CCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHH
Confidence 999999 9987 89999999999999999999999999999988899999986
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.3e-136 Score=1111.13 Aligned_cols=465 Identities=38% Similarity=0.664 Sum_probs=442.1
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhc------------C----------
Q 045043 2 KYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSW------------Q---------- 59 (490)
Q Consensus 2 ~~~~~~~~lk~~v~~~l~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~------------~---------- 59 (490)
.+.+++++||++||+|+.+.. |++++|++||+||||||||||++||+++|++||+. +
T Consensus 32 ~~~~~~~~Lk~~V~~~~~~~~-d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~~~~~~~dl~~~al~FRl 110 (549)
T 1n1b_A 32 RHLDRKAELIVQVRILLKEKM-EPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRL 110 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCHHHHHCCCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc-CHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhhhccccccccccCChhhchhhhhH
Confidence 367899999999999998777 89999999999999999999999999999999952 1
Q ss_pred ----cccc----------CCC-ccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhc---c-CCChhh
Q 045043 60 ----GYDH----------PEG-NFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTK---L-NPYMSE 120 (490)
Q Consensus 60 ----Gy~v----------~~g-~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~---~-~~~l~~ 120 (490)
||+| ++| +|++++++||+||||||||||+++|||+|||||+.||++||++++.. + +++|++
T Consensus 111 LR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~ 190 (549)
T 1n1b_A 111 LRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLL 190 (549)
T ss_dssp HHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHHHHH
T ss_pred HHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHH
Confidence 9999 678 99999999999999999999999999999999999999999999865 5 788999
Q ss_pred HhhhhccccccccchhhHHHHHHHHhc-ccCCChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHH
Q 045043 121 LVSHSLELPRHYRMRRLEVRWYTEAYR-KKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLME 199 (490)
Q Consensus 121 ~V~~aL~~P~~~~~~Rle~r~yi~~Y~-~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e 199 (490)
+|+|||++|||+++||||||+||++|+ ++++|++||||||||||+||++||+||++++|||+++||.+++||+|||++|
T Consensus 191 ~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve 270 (549)
T 1n1b_A 191 WIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVE 270 (549)
T ss_dssp HHHHHHHSCGGGCCTTTSHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHH
T ss_pred HHHHHhcCchhcCchHHHHHHHHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHH
Confidence 999999999999999999999999999 8899999999999999999999999999999999999998889999999999
Q ss_pred HHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHH
Q 045043 200 CFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEM 279 (490)
Q Consensus 200 ~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~ 279 (490)
||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+|+++++|+
T Consensus 271 ~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei 350 (549)
T 1n1b_A 271 SFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDA 350 (549)
T ss_dssp HHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHH
Q 045043 280 AYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSL 359 (490)
Q Consensus 280 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll 359 (490)
+.++.+.+|+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++++
T Consensus 351 ---------------------~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~ 409 (549)
T 1n1b_A 351 ---------------------AYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII 409 (549)
T ss_dssp ---------------------HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH
T ss_pred ---------------------HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH
Confidence 99998999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCcHHH-HHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHH
Q 045043 360 VHSYFLVSRSINKKA-LESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDS 434 (490)
Q Consensus 360 ~~~~~~~g~~l~~e~-~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~ 434 (490)
++++++||+.+|+++ ++|+.++|+++++++.|+||+|||+|++ +|+++|+|+|||+|||+|+|||++++++||++
T Consensus 410 ~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~ 489 (549)
T 1n1b_A 410 SPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIRE 489 (549)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043 435 CWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 435 ~wk~ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~ 489 (490)
+||+||+++++++ ++|++|+++++|+||+++++|+++||||.|++.+|++|+++
T Consensus 490 ~wk~ln~e~l~~~-~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l 543 (549)
T 1n1b_A 490 AWKDMNTAIAAGY-PFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGL 543 (549)
T ss_dssp HHHHHHHHHHTCC-SSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHH
Confidence 9999999999987 89999999999999999999999999999988899999986
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=3e-136 Score=1111.52 Aligned_cols=464 Identities=41% Similarity=0.718 Sum_probs=434.4
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHhcCCccccHHHHHHHHHhch-hc------C--------------c
Q 045043 2 KYQRRAKELEEEVKFMINNENGEMLPILELIDDVQRLGLGYRFENEIKRALHRIL-SW------Q--------------G 60 (490)
Q Consensus 2 ~~~~~~~~lk~~v~~~l~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~-~~------~--------------G 60 (490)
.+.+++++||++||+|+.+.. |++++|++||+||||||+|||++||+++|++|| +. + |
T Consensus 61 ~~~~~~~~Lk~~Vr~~~~~~~-d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~Dl~~~al~FRlLR~hG 139 (569)
T 2j5c_A 61 KHLMRAAGMIDQVKMMLQEEV-DSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYD 139 (569)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCSCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCcccCChhhhhHHhHHHHhcC
Confidence 367899999999999998877 899999999999999999999999999999999 52 1 9
Q ss_pred ccc----------CCC-ccccccchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhcc-CCChhhHhhhhccc
Q 045043 61 YDH----------PEG-NFTETVHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTKL-NPYMSELVSHSLEL 128 (490)
Q Consensus 61 y~v----------~~g-~F~~~~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~~-~~~l~~~V~~aL~~ 128 (490)
|+| ++| +|++++++||+|||||||||||++|||+|||||+.||++||++++..+ +++|+++|+|||++
T Consensus 140 y~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~ 219 (569)
T 2j5c_A 140 FSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALEL 219 (569)
T ss_dssp CCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHS
T ss_pred CCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcC
Confidence 999 778 999999999999999999999999999999999999999999988766 78899999999999
Q ss_pred cccccchhhHHHHHHHHhc-ccCCChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHhcc
Q 045043 129 PRHYRMRRLEVRWYTEAYR-KKDANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSVGM 207 (490)
Q Consensus 129 P~~~~~~Rle~r~yi~~Y~-~~~~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~ 207 (490)
|||+++||||||+||++|+ ++++|++||||||||||+||++||+||++++|||+++||.+++||+|||++|||||++|+
T Consensus 220 P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~ 299 (569)
T 2j5c_A 220 PTHWRVQMPNARSFIDAYKRRPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGV 299 (569)
T ss_dssp CGGGCCSHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999 889999999999999999999999999999999999999888999999999999999999
Q ss_pred ccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhc
Q 045043 208 VPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQH 287 (490)
Q Consensus 208 ~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~ 287 (490)
+|||++|.+|+++||+++|+|++||+||+|||++|++.||+||+|||+++++++|+|||+||.+|+++++|+
T Consensus 300 ~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei-------- 371 (569)
T 2j5c_A 300 VERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEM-------- 371 (569)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHH--------
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhc
Q 045043 288 ISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVS 367 (490)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g 367 (490)
+.++.+.+|+++++|++++|++++++|++||+|+++||+||++|||+||.+|+|+++++++++++||
T Consensus 372 -------------~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g 438 (569)
T 2j5c_A 372 -------------AYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLT 438 (569)
T ss_dssp -------------HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSC
T ss_pred -------------HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045043 368 RSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443 (490)
Q Consensus 368 ~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 443 (490)
+.+|+++++|+.++|+++++++.|+||+|||+|++ +|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++|
T Consensus 439 ~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e~ 518 (569)
T 2j5c_A 439 DSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEM 518 (569)
T ss_dssp SSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hcCCCCCcHHHHHHHHHHhhhhchhcccC-CCCCCCChhHHHHhhhc
Q 045043 444 VNDQHPFVEPFVETAFNLARIAQCTYQYG-DEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 444 l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~-D~~t~~~~~~k~~i~~~ 489 (490)
++ + ++|++|+++++|+||+++++|+++ ||||.|++.+|++|+++
T Consensus 519 l~-~-~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~l 563 (569)
T 2j5c_A 519 MT-S-SFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDL 563 (569)
T ss_dssp HH-C-CSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHH
T ss_pred hc-c-CCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHH
Confidence 99 7 899999999999999999999999 99999988899999986
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.3e-128 Score=1084.39 Aligned_cols=443 Identities=34% Similarity=0.580 Sum_probs=419.7
Q ss_pred CccchhhhHHHHHhcCCccccHHHHHHHHHhchhc---------------C--------------cccc----------C
Q 045043 24 EMLPILELIDDVQRLGLGYRFENEIKRALHRILSW---------------Q--------------GYDH----------P 64 (490)
Q Consensus 24 d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~---------------~--------------Gy~v----------~ 64 (490)
|++++||+||+||||||+|||++||+++|+++|+. + ||+| +
T Consensus 297 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 376 (817)
T 3sdr_A 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDA 376 (817)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCC
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhhc
Confidence 78999999999999999999999999999999851 1 9999 6
Q ss_pred CCcccccc---chhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhhc--------cCCChhhHhhhhcccccccc
Q 045043 65 EGNFTETV---HKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKTK--------LNPYMSELVSHSLELPRHYR 133 (490)
Q Consensus 65 ~g~F~~~~---~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~ 133 (490)
+|+|++++ .+||+||||||||||++||||+|||||+.||++||++.+.. ++++|+++|+|||++|||++
T Consensus 377 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~ 456 (817)
T 3sdr_A 377 NGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHAS 456 (817)
T ss_dssp --CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTC
T ss_pred CCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhcc
Confidence 68899865 69999999999999999999999999999999999998742 34789999999999999999
Q ss_pred chhhHHHHHHHHhc-ccC------------CChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHH
Q 045043 134 MRRLEVRWYTEAYR-KKD------------ANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMEC 200 (490)
Q Consensus 134 ~~Rle~r~yi~~Y~-~~~------------~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~ 200 (490)
+||||||+||++|+ ++. +|++||||||||||+||++||+||++++|||+++|| .++||||||++||
T Consensus 457 l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~ 535 (817)
T 3sdr_A 457 VPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLEF 535 (817)
T ss_dssp CHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHHH
T ss_pred ChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHHH
Confidence 99999999999999 654 499999999999999999999999999999999999 6999999999999
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHH
Q 045043 201 FIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMA 280 (490)
Q Consensus 201 yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~ 280 (490)
|||++|++|||+||.+|++|||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|++++||+
T Consensus 536 Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~- 614 (817)
T 3sdr_A 536 YFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEV- 614 (817)
T ss_dssp HHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhH-HH
Q 045043 281 YDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGEL-SL 359 (490)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~-ll 359 (490)
+.++.++||+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|+++ ++
T Consensus 615 --------------------~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~ 674 (817)
T 3sdr_A 615 --------------------AWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLL 674 (817)
T ss_dssp --------------------HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred --------------------HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999999999998 88
Q ss_pred HHHHHhhcCCCcHHHHHhhh--chhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcC-CCCHHHHHHHHHHHH
Q 045043 360 VHSYFLVSRSINKKALESLG--KYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHET-GLSEEIARQHLRNMI 432 (490)
Q Consensus 360 ~~~~~~~g~~l~~e~~e~~~--~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~-gvS~EeA~~~i~~~i 432 (490)
.++++++|+.+|+++++|+. +.|+|+++++.|+||+|||+|++ +|+++|+|+|||||| |+|+|+|+++++++|
T Consensus 675 ~~~~~~~g~~lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~I 754 (817)
T 3sdr_A 675 SGVLIMDGQLLSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSIL 754 (817)
T ss_dssp HHHTTCTTCCCCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 88889999999999999987 55699999999999999999999 999999999999999 799999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043 433 DSCWKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 433 ~~~wk~ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~ 489 (490)
+++||+||++|++++ ++|++|+++++|+||+++++|+++||||.|+..+|++|+++
T Consensus 755 e~~wKeln~e~l~~~-~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~l 810 (817)
T 3sdr_A 755 EPAVKELTREFLKPD-DVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKEC 810 (817)
T ss_dssp HHHHHHHHHHHHSCC-SSCHHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHH
Confidence 999999999999987 89999999999999999999999999999987899999986
No 8
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=1.6e-128 Score=1079.79 Aligned_cols=442 Identities=33% Similarity=0.578 Sum_probs=420.6
Q ss_pred CccchhhhHHHHHhcCCccccHHHHHHHHHhchhc---------------C--------------cccc----------C
Q 045043 24 EMLPILELIDDVQRLGLGYRFENEIKRALHRILSW---------------Q--------------GYDH----------P 64 (490)
Q Consensus 24 d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~---------------~--------------Gy~v----------~ 64 (490)
|++++||+||+||||||+|||++||+++|+++|+. + ||+| +
T Consensus 269 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 348 (785)
T 3s9v_A 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDE 348 (785)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 78999999999999999999999999999999862 1 9999 6
Q ss_pred CCcccccc---chhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhh--------ccCCChhhHhhhhcccccccc
Q 045043 65 EGNFTETV---HKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKT--------KLNPYMSELVSHSLELPRHYR 133 (490)
Q Consensus 65 ~g~F~~~~---~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~--------~~~~~l~~~V~~aL~~P~~~~ 133 (490)
+|+|++++ .+||+||||||||||++||||+|||||+.||++||++.+. .++++|+++|+|||++|||++
T Consensus 349 ~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~ 428 (785)
T 3s9v_A 349 NGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKS 428 (785)
T ss_dssp TSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGC
T ss_pred CCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccC
Confidence 78998866 6999999999999999999999999999999999999864 257889999999999999999
Q ss_pred chhhHHHHHHHHhc-ccC------------CChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHH
Q 045043 134 MRRLEVRWYTEAYR-KKD------------ANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMEC 200 (490)
Q Consensus 134 ~~Rle~r~yi~~Y~-~~~------------~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~ 200 (490)
+||||||+||++|+ ++. +|++||||||||||+||++||+||++++|||+++|| .++||+|||++||
T Consensus 429 l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve~ 507 (785)
T 3s9v_A 429 MPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEI 507 (785)
T ss_dssp CHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHHH
T ss_pred chHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHHH
Confidence 99999999999999 654 499999999999999999999999999999999999 6999999999999
Q ss_pred HHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHH
Q 045043 201 FIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMA 280 (490)
Q Consensus 201 yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~ 280 (490)
|||++|++|||+||.+|++|||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|++++||+
T Consensus 508 Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei- 586 (785)
T 3s9v_A 508 YFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDI- 586 (785)
T ss_dssp HHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHH
Q 045043 281 YDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLV 360 (490)
Q Consensus 281 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~ 360 (490)
++++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++
T Consensus 587 --------------------~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~ 646 (785)
T 3s9v_A 587 --------------------AKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVL 646 (785)
T ss_dssp --------------------HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHH
T ss_pred --------------------HHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHH
Confidence 899999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcC-CCCHHHHHHHHHHHHHHH
Q 045043 361 HSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHET-GLSEEIARQHLRNMIDSC 435 (490)
Q Consensus 361 ~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~-gvS~EeA~~~i~~~i~~~ 435 (490)
+++++||+.+|+++++|+..+|+++++++.|+||+|||+|++ +|+++|+|+|||||| |+|+|+|+++++++|+++
T Consensus 647 ~~~~~~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~ 726 (785)
T 3s9v_A 647 ISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENA 726 (785)
T ss_dssp HHTTCSSSCCCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998777999999999999999999999 999999999999999 999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHhhhhchhcccCCCCCCCCh-hHHHHhhhc
Q 045043 436 WKKMNKEWVNDQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDG-RAKKRVVIS 489 (490)
Q Consensus 436 wk~ln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~-~~k~~i~~~ 489 (490)
||+||+++++++ +|++|+++++|+||+++++|+++||||.|+. .+|++|+++
T Consensus 727 wKeln~e~l~~~--~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~l 779 (785)
T 3s9v_A 727 LEELNREFVNNK--IPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNC 779 (785)
T ss_dssp HHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHH
Confidence 999999999954 9999999999999999999999999999975 799999986
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=2.4e-128 Score=1075.76 Aligned_cols=441 Identities=31% Similarity=0.527 Sum_probs=416.3
Q ss_pred CccchhhhHHHHHhcCCccccHHHHHHHHHhchhc---------------C--------------cccc----------C
Q 045043 24 EMLPILELIDDVQRLGLGYRFENEIKRALHRILSW---------------Q--------------GYDH----------P 64 (490)
Q Consensus 24 d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~---------------~--------------Gy~v----------~ 64 (490)
|++++||+||+||||||+|||++||+++|+++|+. + ||+| +
T Consensus 245 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 324 (764)
T 3p5p_A 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDE 324 (764)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhcC
Confidence 78999999999999999999999999999999851 1 9999 6
Q ss_pred CCccccc---cchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhh---ccCCChhhHhhhhccccccccchhhH
Q 045043 65 EGNFTET---VHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKT---KLNPYMSELVSHSLELPRHYRMRRLE 138 (490)
Q Consensus 65 ~g~F~~~---~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~---~~~~~l~~~V~~aL~~P~~~~~~Rle 138 (490)
+|+|+++ +.+||+||||||||||++||||+|||||+.||++||++.+. .++++|+++|+|||++|||+++||||
T Consensus 325 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rle 404 (764)
T 3p5p_A 325 NGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLE 404 (764)
T ss_dssp TSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHHH
T ss_pred CCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHHH
Confidence 7899864 58999999999999999999999999999999999999874 36788999999999999999999999
Q ss_pred HHHHHHHhc-ccC------------CChHHHHHHhhhhHHHHhhhHHHHHHHHHHHhhhCccccchhhhhhHHHHHHHHh
Q 045043 139 VRWYTEAYR-KKD------------ANCMLLEFAKLDFNRVQSSYQEEIKNLTRWWEDIDLAKNLKFARDRLMECFIWSV 205 (490)
Q Consensus 139 ~r~yi~~Y~-~~~------------~n~~lLelAKldFn~~Q~~hq~El~~lsrWw~~~~L~~~l~faRdr~~e~yfw~~ 205 (490)
||+||++|+ ++. +|++||||||||||+||++||+||++++|||+++|| .++||||||++|||||++
T Consensus 405 ar~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~~ 483 (764)
T 3p5p_A 405 ARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSSA 483 (764)
T ss_dssp HHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHTC
T ss_pred HHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHHH
Confidence 999999999 654 499999999999999999999999999999999999 699999999999999999
Q ss_pred ccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhh
Q 045043 206 GMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILK 285 (490)
Q Consensus 206 a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~ 285 (490)
| |||+||.+|++|||+++|++++||+||+|||+|||+.||+||+|||++++++||+|||+||.+|++++||+
T Consensus 484 ~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei------ 555 (764)
T 3p5p_A 484 T--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEV------ 555 (764)
T ss_dssp C--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHH------
T ss_pred h--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHH------
Confidence 9 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh
Q 045043 286 QHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL 365 (490)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~ 365 (490)
++++.+++|+++++|++++|++++++|++||+|+++||+||+||||+||.+|+|++++++.++++
T Consensus 556 ---------------~~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~ 620 (764)
T 3p5p_A 556 ---------------NNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL 620 (764)
T ss_dssp ---------------HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ---------------HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH
Confidence 89999889999999999999999999999999999999999999999999999999988899999
Q ss_pred hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCcchhhhhhhcC-CCCHHHHHHHHHHHHHHHHHHHH
Q 045043 366 VSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTASSILCYMHET-GLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 366 ~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~n~V~cyMke~-gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
+|+.+|+++++|+..+|+|+++++.|+||+|||+|++ +|+++|+|+|||||| |+|+|+|+++++++|+++||+||
T Consensus 621 ~G~~lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln 700 (764)
T 3p5p_A 621 MGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEAS 700 (764)
T ss_dssp SSSCCCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998777999999999999999999999 999999999999999 89999999999999999999999
Q ss_pred HHHhc-CCCCCcHHHHHHHHHHhhhhchhcccCCCCCCCChhHHHHhhhc
Q 045043 441 KEWVN-DQHPFVEPFVETAFNLARIAQCTYQYGDEHGAPDGRAKKRVVIS 489 (490)
Q Consensus 441 ~e~l~-~~~~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~~ 489 (490)
+++++ ++ ++|++|+++++|+||+++++|+++||||.|+..+|++|+++
T Consensus 701 ~e~l~~~~-~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~l 749 (764)
T 3p5p_A 701 FEYFKPSN-DIPMGCKSFIFNLRLCVQIFYKFIDGYGIANEEIKDYIRKV 749 (764)
T ss_dssp HHHHSCCS-SSCHHHHHHHHHTHHHHHHHSCC-------CCCHHHHHHHH
T ss_pred HHHhhCCC-CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHH
Confidence 99997 55 89999999999999999999999999999977799999986
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=6.7e-94 Score=792.06 Aligned_cols=411 Identities=22% Similarity=0.322 Sum_probs=348.8
Q ss_pred HHHHHHHHHHHHHHHhhc----cCCccchhhhHHHHHhcCCccccHHHHHHHHHhchhc---------------C-----
Q 045043 4 QRRAKELEEEVKFMINNE----NGEMLPILELIDDVQRLGLGYRFENEIKRALHRILSW---------------Q----- 59 (490)
Q Consensus 4 ~~~~~~lk~~v~~~l~~~----~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~---------------~----- 59 (490)
.+..+-|+..|+++..+. ..|++++||+||+||||||+|||++||+++|+++|+. +
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tA 299 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTA 299 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHH
Confidence 345677888888875432 1278999999999999999999999999999999862 1
Q ss_pred ---------cccc---------CCCccccc---cchhhHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhh--c---
Q 045043 60 ---------GYDH---------PEGNFTET---VHKDVKGVLSLNEASYLAFEGEDILNEALTFSRTHLNQLKT--K--- 113 (490)
Q Consensus 60 ---------Gy~v---------~~g~F~~~---~~~dv~~llsLyeAs~l~~~gE~iLdeA~~fs~~~L~~~~~--~--- 113 (490)
||+| ++|+|++. ..+||+||||||||||+++|||+|||||+.||++||++.+. .
T Consensus 300 L~FRLLRqhGy~VS~DvF~~Fk~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d 379 (727)
T 3pya_A 300 MAFRLLRQHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELID 379 (727)
T ss_dssp HHHHHHHHTTCCCCGGGGGGGEETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHhCCCCCCHHHHHhccCCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 9999 67889843 46899999999999999999999999999999999999773 2
Q ss_pred ---cCCChhhHhhhhccccccccchhhHHHHHHHHhc-ccC-------------CChHHHHHHhhhhHHHHhhhHHHHHH
Q 045043 114 ---LNPYMSELVSHSLELPRHYRMRRLEVRWYTEAYR-KKD-------------ANCMLLEFAKLDFNRVQSSYQEEIKN 176 (490)
Q Consensus 114 ---~~~~l~~~V~~aL~~P~~~~~~Rle~r~yi~~Y~-~~~-------------~n~~lLelAKldFn~~Q~~hq~El~~ 176 (490)
++++|+++|+|||++|||+++||||||+||++|+ +++ +|++||||||||||+||++||+||++
T Consensus 380 kw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~ 459 (727)
T 3pya_A 380 KWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDI 459 (727)
T ss_dssp SSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhh
Confidence 3578999999999999999999999999999999 554 69999999999999999999999999
Q ss_pred HHHHHhhhCccccchhhhhhHHHHHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhhcCcc
Q 045043 177 LTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVERWDIN 256 (490)
Q Consensus 177 lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~rWd~~ 256 (490)
++|||+++|| .++||||||++|||||++|++|||+||.+|+++||++++++++||+||+|| |||+.||+||+|||.+
T Consensus 460 lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~ 536 (727)
T 3pya_A 460 FQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIAN 536 (727)
T ss_dssp HHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC--
T ss_pred hheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccc
Confidence 9999999999 569999999999999999999999999999999999999999999999999 9999999999999974
Q ss_pred ---------cccC---CChh--HHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHH
Q 045043 257 ---------AVND---LPNY--MKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWAD 322 (490)
Q Consensus 257 ---------~~~~---lPe~--mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~ 322 (490)
+.+. +|+| ||+||.+|+||+||+ +.++.++||+++.+|++++|.+
T Consensus 537 ~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei---------------------~~~~~k~qg~~v~~~l~~~W~~ 595 (727)
T 3pya_A 537 ARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQM---------------------SFDLFMSHGRDVNNLLYLSWGD 595 (727)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHCCCCHHHHHHHHHH
T ss_pred cccccccccchhhcccCCCcHHHHHHHHHHHHHHHHH---------------------HHHHHHHcCCchHHHHHHHHHH
Confidence 3333 3887 899999999999999 8899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhh-cCCCcHHHHHhhhchhhhHHHHHHHHHHhhccccc
Q 045043 323 LCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLV-SRSINKKALESLGKYHNLIRWPSTIFRLSNDLATS 401 (490)
Q Consensus 323 ~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~-g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~ 401 (490)
+++++++||+ + +| |. +++..+..+ |..+++ ++.. ..+..+.++++.||||+||+.++
T Consensus 596 ~l~s~~~Ea~-~--------~E---------Ae--llv~~I~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~ 653 (727)
T 3pya_A 596 WMEKWKLYGD-E--------GE---------GE--LMVKMIILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKAR 653 (727)
T ss_dssp HHHHHHHHSS-C--------CH---------HH--HHHHHHHHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHhcc-c--------cc---------ee--eeeeeeecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHH
Confidence 9999999998 2 33 22 333344444 555666 3332 33455889999999999999998
Q ss_pred ccCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHhhhhchhcccCCCCCCCCh
Q 045043 402 KIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQH-PFVEPFVETAFNLARIAQCTYQYGDEHGAPDG 480 (490)
Q Consensus 402 krG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~-~~p~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~ 480 (490)
++ |.++++.+.|+..|++|++.++++++ .+|++| |+.+|++.||.. ||+.|.
T Consensus 654 ~~-------------------E~~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~- 706 (727)
T 3pya_A 654 RN-------------------DEKEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH- 706 (727)
T ss_dssp -C-------------------HHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS-
T ss_pred HH-------------------HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH-
Confidence 85 11668999999999999999998763 799999 888889999986 899885
Q ss_pred hHHHHhhh
Q 045043 481 RAKKRVVI 488 (490)
Q Consensus 481 ~~k~~i~~ 488 (490)
|+.+|..
T Consensus 707 -i~~hI~k 713 (727)
T 3pya_A 707 -LQTHISK 713 (727)
T ss_dssp -CHHHHHH
T ss_pred -HHHHHHH
Confidence 8888864
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.4e-49 Score=405.80 Aligned_cols=247 Identities=11% Similarity=0.106 Sum_probs=220.2
Q ss_pred HhhhHHHHHHHH-HHHhhhCccccchhhhhhHHHHHHHHhccccCCCCchHHH-HHHHHHHHHHHHHHhhccc--CCHHH
Q 045043 167 QSSYQEEIKNLT-RWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRR-ALTKVAAFVTIIDYIYAVY--GTLDE 242 (490)
Q Consensus 167 Q~~hq~El~~ls-rWw~~~~L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~~--gt~eE 242 (490)
+..|.+|++..+ +||+++|+.+ .||+|+|++++|||.+|++++|+++.+|+ ++||+++|+|++||+||.+ ||++|
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 455677776544 5999999965 59999999999999999999999999999 9999999999999999998 69999
Q ss_pred HHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHH
Q 045043 243 LELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWAD 322 (490)
Q Consensus 243 l~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~ 322 (490)
++.|++++.+|+.+ .+|+++++++.++.++++++ +..+ +.....+++++|++
T Consensus 94 ~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~---------------------~~~~----~~~~~~~~~~~~~~ 145 (337)
T 1ps1_A 94 TKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRT---------------------CEGM----TPAWCARSARHWRN 145 (337)
T ss_dssp HHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHH---------------------HTTS----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHH---------------------hccC----CHHHHHHHHHHHHH
Confidence 99999999999864 48999999999999999999 5443 33457899999999
Q ss_pred HHHHHHHHHHHhhCCCCC-CHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhccccc
Q 045043 323 LCKSFLQEAKWSYNEYTP-TFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATS 401 (490)
Q Consensus 323 ~~~a~l~EAkW~~~g~vP-s~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~ 401 (490)
++.++++||+|+.+|++| |++||+++|++|+|++++++++++++|..+|+++++. ...++++++++.++||+|||+||
T Consensus 146 ~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~ 224 (337)
T 1ps1_A 146 YFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASL 224 (337)
T ss_dssp HHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999 9999999999999999999999999999999886655 33458999999999999999999
Q ss_pred c----cCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045043 402 K----IGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443 (490)
Q Consensus 402 k----rG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 443 (490)
+ +|+++|+|.|||+++|+|+|+|++++.++++++||+||++.
T Consensus 225 ~kE~~~G~~~n~V~~~m~~~g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 225 EKEEARGEQNNMVMILRREHGWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp HHHHHTTCCCSHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2.1e-47 Score=383.07 Aligned_cols=238 Identities=12% Similarity=0.049 Sum_probs=216.7
Q ss_pred hhHHHHHHHHH-HHhhhCccccchhhhhhHHHHHHHHhccccCCCCchHHH-HHHHHHHHHHHHHHhhcccCCHHHHHHH
Q 045043 169 SYQEEIKNLTR-WWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRR-ALTKVAAFVTIIDYIYAVYGTLDELELF 246 (490)
Q Consensus 169 ~hq~El~~lsr-Ww~~~~L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~~gt~eEl~~f 246 (490)
-|.+|++..++ ||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. ||++|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 46777776554 66999996 569999999999999988888899999999 999999999999999999 889999999
Q ss_pred HHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHH
Q 045043 247 TYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKS 326 (490)
Q Consensus 247 t~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a 326 (490)
++++.+|+.+ +.+|++|++++.+++++++++ +..+. .+.++.|+.++++
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~---------------------~~~~~--------~~~~~~~~~~~~~ 139 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESM---------------------RAHDA--------ELANEVLEPTFVF 139 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHH---------------------HHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHH---------------------HhhCh--------HHHHHHHHHHHHH
Confidence 9999999875 478999999999999999999 66552 3567779999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----
Q 045043 327 FLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK---- 402 (490)
Q Consensus 327 ~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k---- 402 (490)
|+ ||+|+.+|++||++||+++|++|+|++++++++++++|..+|+++++ ..|+++++++.++||+|||+||+
T Consensus 140 ~~-ea~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~ 215 (300)
T 1di1_A 140 MR-AQTDRARLSIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEE 215 (300)
T ss_dssp HH-TTTCCCCCCCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HH-HHhccccCCCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 97 89999999999999999999999999999999999999999999998 36999999999999999999999
Q ss_pred cCC--------CcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045043 403 IGK--------TASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443 (490)
Q Consensus 403 rG~--------~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 443 (490)
+|+ ++|+|.|||+++|+|+|+|+++++++|+++||+||+..
T Consensus 216 ~g~~~h~~~~~~~n~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 216 ASRTGHKEGAFLCSAVKVLAEESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp C----------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccchhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 77999999999999999999999999999999999876
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=5.5e-46 Score=376.63 Aligned_cols=242 Identities=14% Similarity=0.089 Sum_probs=215.8
Q ss_pred HHHhhhHHHHHHHHH-HHhhhCccccchhhhhhHHHHHHHHhccccCCCCchHHH-HHHHHHHHHHHHHHhhcccCCHHH
Q 045043 165 RVQSSYQEEIKNLTR-WWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRR-ALTKVAAFVTIIDYIYAVYGTLDE 242 (490)
Q Consensus 165 ~~Q~~hq~El~~lsr-Ww~~~~L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~~gt~eE 242 (490)
.-...|.+|++..+. ||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. ||++|
T Consensus 23 ~~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e 100 (320)
T 3bny_A 23 PLCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEE 100 (320)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhh
Confidence 334557778776555 6699999766 9999999999999998888899999999 999999999999999999 89999
Q ss_pred HHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHH
Q 045043 243 LELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWAD 322 (490)
Q Consensus 243 l~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~ 322 (490)
++.|++++.+|+.+ ..+|++|++++.+++++++++ ++.+. .+.++.|+.
T Consensus 101 ~~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~---------------------~~~~~--------~~~~~~~~~ 149 (320)
T 3bny_A 101 GSAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESM---------------------RAHDR--------EMADEILEP 149 (320)
T ss_dssp HHHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHH---------------------HHHHH--------HHHHHTHHH
T ss_pred HHHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHH---------------------HhhCH--------HHHHHHHHH
Confidence 99999999999974 468999999999999999999 65542 245555777
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc
Q 045043 323 LCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK 402 (490)
Q Consensus 323 ~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k 402 (490)
++ ++++|++|+.+|++||++||+++|++|+|++++++++++++|..+|+++++ ..|+++++++.++||+|||+||+
T Consensus 150 ~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~ 225 (320)
T 3bny_A 150 VF-LFMRAQTDRTRARPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQ---RVREIDANCSKHLSVVNDIYSYE 225 (320)
T ss_dssp HH-HHHHHTSCCCCCCCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHH---HTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHhhhccCCCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHhcccchhH
Confidence 77 599999999999999999999999999999999999999999999999998 36999999999999999999999
Q ss_pred ----cCC--------CcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045043 403 ----IGK--------TASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443 (490)
Q Consensus 403 ----rG~--------~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 443 (490)
+|+ ++|+|.|||+++|+|+|+|++++++++++.|++||+..
T Consensus 226 kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 226 KELYTSKTAHSEGGILCTSVQILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHCC-----------CCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 78999999999999999999999999999999999865
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=1.5e-43 Score=368.82 Aligned_cols=239 Identities=9% Similarity=-0.008 Sum_probs=217.5
Q ss_pred HHHHHHhhhCccccchhhhhhHHHHHHHHhccccCCCCchHHH-HHHHHHHHHHHHHHhhcc--cC-CHHHHHHHHHHhh
Q 045043 176 NLTRWWEDIDLAKNLKFARDRLMECFIWSVGMVPKPQYSNCRR-ALTKVAAFVTIIDYIYAV--YG-TLDELELFTYAVE 251 (490)
Q Consensus 176 ~lsrWw~~~~L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~--~g-t~eEl~~ft~av~ 251 (490)
++.+||+++|+... +++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.
T Consensus 65 ~~~~W~~~~gl~~~-~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~ 143 (382)
T 3kb9_A 65 TTRTWLLEKRLMPA-DKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLH 143 (382)
T ss_dssp HHHHHHHHTTSSCH-HHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCC-HHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH
Confidence 36789999999544 7899999999999999999999999999 999999999999999996 77 9999999999999
Q ss_pred hcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH
Q 045043 252 RWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEA 331 (490)
Q Consensus 252 rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EA 331 (490)
++- .....+|+++++++.++.++++++ +..+.+ ....+++++|++++++|++||
T Consensus 144 ~~l-~~~~~~p~~~~p~~~al~dl~~~~---------------------~~~~~~----~~~~r~~~~~~~~~~a~l~Ea 197 (382)
T 3kb9_A 144 TAL-DSPGDHLHHEDTLVAGFADSVRRL---------------------YAFLPA----TWNARFARHFHTVIEAYDREF 197 (382)
T ss_dssp HHH-HSCGGGTTCSSHHHHHHHHHHHHH---------------------TTSSCH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh-cCCCCCCCCCChHHHHHHHHHHHH---------------------HccCCH----HHHHHHHHHHHHHHHHHHHHH
Confidence 851 123336889999999999999999 544422 238999999999999999999
Q ss_pred HHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc----cCCCc
Q 045043 332 KWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK----IGKTA 407 (490)
Q Consensus 332 kW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k----rG~~~ 407 (490)
+|+.+|++||++|||++|++|+|++++++++++++|..+|++++++ ...++++++++.++||+|||+|++ +|+++
T Consensus 198 ~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~ 276 (382)
T 3kb9_A 198 HNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVH 276 (382)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999998877 456778999999999999999999 99999
Q ss_pred chhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045043 408 SSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKE 442 (490)
Q Consensus 408 n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e 442 (490)
|+|.|||+++|+|+|+|++++++||+++||+||+.
T Consensus 277 N~V~~~m~~~g~s~eeA~~~v~~~i~~~~k~~~~~ 311 (382)
T 3kb9_A 277 NLGISLITHHSLTLEEAIGEVRRRVEECITEFLAV 311 (382)
T ss_dssp SHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999984
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.97 E-value=8e-30 Score=269.05 Aligned_cols=238 Identities=12% Similarity=0.044 Sum_probs=179.9
Q ss_pred HHHHHHhhhCccccchhhhhhHHHH-HHHHhccccCCCC-chHHH-HHHHHHHHHHHHHHhh-cccC-CHHH-HHHHHH-
Q 045043 176 NLTRWWEDIDLAKNLKFARDRLMEC-FIWSVGMVPKPQY-SNCRR-ALTKVAAFVTIIDYIY-AVYG-TLDE-LELFTY- 248 (490)
Q Consensus 176 ~lsrWw~~~~L~~~l~faRdr~~e~-yfw~~a~~feP~~-s~~Rl-~~aK~~~l~~iiDD~y-D~~g-t~eE-l~~ft~- 248 (490)
++..|..++++...-. .|+++..+ |...+|.+| |.. +..|+ +.+|++.|+|++||.| |..| +.+. -..+..
T Consensus 134 ~~~~W~~~~~~l~~~~-~~~~~~~~~~~llaa~~y-P~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l~~a 211 (433)
T 3v1v_A 134 RIKRWAEDEVQLYPEE-WEGQFDGFSVGRYMVGCH-PDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRLLLA 211 (433)
T ss_dssp HHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHC-TTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHH-HHHHHHhcCHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHHHHH
Confidence 5667999887644323 57788777 777788888 999 79999 9999999999999995 9754 3332 112222
Q ss_pred --HhhhcCcccccCCCh-----hHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHH
Q 045043 249 --AVERWDINAVNDLPN-----YMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWA 321 (490)
Q Consensus 249 --av~rWd~~~~~~lPe-----~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~ 321 (490)
++...... .+.-|. --..+-.+++++++++ ...+.+ ....+++++|+
T Consensus 212 ~~~~d~l~~~-~~g~p~~~~~~~~dp~~~al~d~~~~l---------------------~~~a~~----~q~~r~~~~~~ 265 (433)
T 3v1v_A 212 HTAIDHFHST-AEYTPTWQASLAADAPRRAYDSAMGYF---------------------VRAATP----SQSDRYRHDMA 265 (433)
T ss_dssp HTTTSCCCCC-TTTHHHHHHHTTSSHHHHHHHHHHHHH---------------------HHHSCH----HHHHHHHHHHH
T ss_pred HHHHHhhhcc-cCCCCccccccCCchHHHHHHHHHHHH---------------------HhhcCH----HHHHHHHHHHH
Confidence 22221110 010010 0124567888888888 555432 34899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhccccc
Q 045043 322 DLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATS 401 (490)
Q Consensus 322 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~ 401 (490)
+++++|++||+|+.+|++||++|||++|++| |+.+++.++.+++|..+|++++++ ....+++++++.++||+|||+||
T Consensus 266 ~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy 343 (433)
T 3v1v_A 266 RLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSY 343 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999999999999999999 554445567777999999998776 34567899999999999999999
Q ss_pred c----c-CCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 045043 402 K----I-GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEW 443 (490)
Q Consensus 402 k----r-G~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~ 443 (490)
+ + |+++|+|.|||+++|+|+|+|++++.+|+++++++|.+..
T Consensus 344 ~kE~~~gg~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 344 TKELNSPGRHLNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHTTSSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 5 5788999999999999999999999999999999998654
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.64 E-value=1e-15 Score=158.51 Aligned_cols=248 Identities=11% Similarity=-0.035 Sum_probs=172.7
Q ss_pred HHHHHHHHHHhhhC------------ccccchhhhhhHHHHHHHHhccccCCCCchHHH-HHHHHHHHHHHHHHhhcccC
Q 045043 172 EEIKNLTRWWEDID------------LAKNLKFARDRLMECFIWSVGMVPKPQYSNCRR-ALTKVAAFVTIIDYIYAVYG 238 (490)
Q Consensus 172 ~El~~lsrWw~~~~------------L~~~l~faRdr~~e~yfw~~a~~feP~~s~~Rl-~~aK~~~l~~iiDD~yD~~g 238 (490)
+|-.+..+|..+.| |... +=..++++.+=.|+++..| |..+...+ +++++.+|+|++||++|..+
T Consensus 30 e~r~~~l~w~~~~~~~~~~~~~~~~~l~~~-~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~ 107 (374)
T 1yyq_A 30 EERIENLHYAYNKAAHHFAQPRQQQLLKVD-PKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY 107 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHSCCC-HHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH
T ss_pred HHHHHHHHHHHHhccchhcccccccccccC-HHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH
Confidence 44455668988888 4211 2144566666566777777 99999888 99999999999999998543
Q ss_pred CHHHHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHH
Q 045043 239 TLDELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTK 318 (490)
Q Consensus 239 t~eEl~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke 318 (490)
+++..|.+.+-+ +.+. + .++..++.+.+.++ .+.-+..+...+.+
T Consensus 108 --~~l~~~~~~ll~--G~~~---~---~Pl~~al~dl~~rl-------------------------~~~~~p~~~~rf~~ 152 (374)
T 1yyq_A 108 --PTMVNYFDDLQA--GREQ---A---HPWWALVNEHFPNV-------------------------LRHFGPFCSLNLIR 152 (374)
T ss_dssp --HHHTTHHHHHHH--TCCC---S---SHHHHHHHHHHHHH-------------------------HTTSCHHHHHHHHH
T ss_pred --HHHHHHHHHHhc--CCCC---C---ChHHHHHHHHHHHH-------------------------HHhcCHHHHHHHHH
Confidence 677777776654 2211 1 14445555555555 44455567889999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 319 AWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 319 ~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
+|.+++.++++|+.. .+..|+.++|...++.++|....... ++ .+..+.++... .......+.....++.|+|||
T Consensus 153 s~~~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~~-~~-~P~~~~~e~~~-~~~~~~~i~am~~~i~~~NDI 227 (374)
T 1yyq_A 153 STLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGA-SL-WPKEQFNERSL-FLEITSAIAQMENWMVWVNDL 227 (374)
T ss_dssp HHHHHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHHH-TT-CCTTTCCTTTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHHH-hh-ccccccchhhc-chhHHHHHHHHHHHHHhhhhh
Confidence 999999999999874 67789999999998888887543322 11 22222211100 111334556666699999999
Q ss_pred cccc----c-CCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhhh
Q 045043 399 ATSK----I-GKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVEPFVETAFNLARIA 465 (490)
Q Consensus 399 ~S~k----r-G~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~~~~p~~~~~~~~n~aR~~ 465 (490)
.|+. . |+.+|.|..++.++|+|.++|++++..++..+..++.+ .+.+ ..| .++..+-+..|.-
T Consensus 228 lSf~KE~~~~Gd~~NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~-~L~~--~~~-~~l~al~~~irG~ 295 (374)
T 1yyq_A 228 MSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVA-VFSD--KDP-QVMDTIECFMHGY 295 (374)
T ss_dssp HHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH-HHSS--SCH-HHHHHHHHHHHHH
T ss_pred hccchhhhccCCccchhhhehhcCCCCHHHHHHHHHHHHHHHHHHHHH-Hhcc--CCH-HHHHHHHHHHhHh
Confidence 9999 3 99999999999999999999999999999999988865 4432 233 2455555555544
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=91.90 E-value=8.4 Score=37.65 Aligned_cols=202 Identities=10% Similarity=0.092 Sum_probs=106.4
Q ss_pred chhhhhhHHH---HHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhhh-cCcccc-cC-CCh
Q 045043 190 LKFARDRLME---CFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYGTLDELELFTYAVER-WDINAV-ND-LPN 263 (490)
Q Consensus 190 l~faRdr~~e---~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~gt~eEl~~ft~av~r-Wd~~~~-~~-lPe 263 (490)
+.++++.+.. +|+++.-.. | ...|..+.-+-.+.-.+||+=|....+.+|+.+-+.+++ .++... ++ .|+
T Consensus 14 ~~~c~~~~~~~s~sF~~a~~~L--p--~~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~ 89 (293)
T 3acx_A 14 FKYCHKIMKKHSKSFSYAFDLL--P--EDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD 89 (293)
T ss_dssp HHHHHHHHHHHCHHHHHHHTTS--C--HHHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC
T ss_pred HHHHHHHHhccCCcHHHHHHhC--C--HHHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC
Confidence 3455554433 355554444 3 256788888889999999999964434447777666655 222210 00 022
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHH
Q 045043 264 YMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFE 343 (490)
Q Consensus 264 ~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~e 343 (490)
.++..+|.+++.+. +. -++.+.+++.++-+ +......+|++
T Consensus 90 --~pv~~al~~~~~~~-----------------------------~l-----~~~~~~~li~g~~~---Dl~~~~~~t~~ 130 (293)
T 3acx_A 90 --RRIMMALQHVAQHK-----------------------------NI-----AFQSFYNLIDTVYK---DQHFTMFETDA 130 (293)
T ss_dssp --HHHHHHHHHHHHHS-----------------------------CC-----CHHHHHHHHHHHHH---HTTCCCCSSHH
T ss_pred --CHHHHHHHHHHHHh-----------------------------CC-----CHHHHHHHHHHHHH---HcCCCCCCCHH
Confidence 35666666665554 11 12334556666643 33345678999
Q ss_pred HHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccc-cCCCcchhhhhhhcCCCCHH
Q 045043 344 EYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSK-IGKTASSILCYMHETGLSEE 422 (490)
Q Consensus 344 EYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~k-rG~~~n~V~cyMke~gvS~E 422 (490)
|+......+.|.--.+++-.+ |..-.++......+.-.-.+.++ ++.|+.--- +|-+ -.=.=-|.++|+|.+
T Consensus 131 dL~~Yc~~vAg~VG~l~~~l~--g~~~~~~~~~~A~~lG~AlQltN----ilRDv~eD~~~gR~-YLP~d~l~~~gv~~e 203 (293)
T 3acx_A 131 ELFGYCYGVAGTVGEVLTPIL--SDHETHQTYDVARRLGESLQLIN----ILRDVGEDFENERI-YFSKQRLKQYEVDIA 203 (293)
T ss_dssp HHHHHHHHHTHHHHHHHHHHH--CSSCCHHHHHHHHHHHHHHHHHH----HHHCHHHHHHTTCC-CSCHHHHHHHTCCHH
T ss_pred HHHHHHHHhhHHHHHHHHHHh--CCCCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHhCCcE-EeCHHHHHHcCCCHH
Confidence 999888888876554444444 33211333332221122222233 233443222 5543 111124678899987
Q ss_pred H---------HHHHHHHHHHHHHHHHHH
Q 045043 423 I---------ARQHLRNMIDSCWKKMNK 441 (490)
Q Consensus 423 e---------A~~~i~~~i~~~wk~ln~ 441 (490)
+ ..+-+..++..+..-+.+
T Consensus 204 ~l~~~~~~~~~~~~~~~l~~~A~~~~~~ 231 (293)
T 3acx_A 204 EVYQNGVNNHYIDLWEYYAAIAEKDFRD 231 (293)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 234455666666655554
No 18
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=91.74 E-value=11 Score=37.04 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=89.8
Q ss_pred chhhhhhHHH---HHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhccc-CC-HHHHHHHHHHhhh-cCcccccCCCh
Q 045043 190 LKFARDRLME---CFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVY-GT-LDELELFTYAVER-WDINAVNDLPN 263 (490)
Q Consensus 190 l~faRdr~~e---~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~-gt-~eEl~~ft~av~r-Wd~~~~~~lPe 263 (490)
+.|+|+-+-. +|+++.-..+ | ..|..+.-+-.++=.+||+=|.. +. ...|+.+-+.+.+ ..+. |.
T Consensus 15 y~~C~~i~~~~~~sF~~a~~~lp-~---~~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~ 85 (294)
T 4hd1_A 15 FEVCRRLTRSHYENFSVVSLFVP-R---HLRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----AT 85 (294)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTCC-T---TTHHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CC
T ss_pred HHHHHHHHHHhCCcHHHHHHHCC-H---HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CC
Confidence 3445544432 3555543333 2 34666677778888999999953 32 3455555555554 2221 21
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHH
Q 045043 264 YMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFE 343 (490)
Q Consensus 264 ~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~e 343 (490)
.+++.+|.+++.+. . ++ ++.+.+++.++.+... ....+|++
T Consensus 86 --~pv~~al~~~~~~~---------------------~--l~-----------~~~~~~li~g~~~Dl~---~~~~~t~~ 126 (294)
T 4hd1_A 86 --TPAFRALQFTIATC---------------------N--LP-----------MEPFLRLIEANRRDQR---KHTYDTWE 126 (294)
T ss_dssp --SHHHHHHHHHHHHH---------------------T--CC-----------SHHHHHHHHHHHHHHH---CSBCCSHH
T ss_pred --CHHHHHHHHHHHHc---------------------C--CC-----------HHHHHHHHHHHHhccc---cCCCCCHH
Confidence 25666666666655 0 11 1234455666654332 34568988
Q ss_pred HHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcccccccCCC--cchhhhhhhcCCCCH
Q 045043 344 EYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTIFRLSNDLATSKIGKT--ASSILCYMHETGLSE 421 (490)
Q Consensus 344 EYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~S~krG~~--~n~V~cyMke~gvS~ 421 (490)
|+......+.|..-.+++-.+ |.. +++........-.-.++++++=-+--|.. +|-+ +. -.|.++|+|.
T Consensus 127 dL~~Y~~~vAg~VG~m~~~i~--g~~-~~~~~~~A~~lG~AlQltNilRDv~eD~~---~gR~YlP~---~~l~~~gv~~ 197 (294)
T 4hd1_A 127 DLRDYCRYSADPVGRLVLGIF--GCL-DDERARLSDATCTALQVANHMQDIDRDLA---LGRIYVPR---ADLEQFGATL 197 (294)
T ss_dssp HHHHHHHHHTHHHHHHHHHHT--TCC-SHHHHHHHHHHHHHHHHHHHHHTHHHHHH---TTCBCSCH---HHHHTTTCCH
T ss_pred HHHHHHHhccchHHHHHHHHh--CCC-CHHHHHHHHHHHHHHHHHHHHHhchhhhc---cCceeCCH---HHHHHcCCCH
Confidence 888887777765444443333 322 23333322111111222222222233321 5543 32 3568899998
Q ss_pred HH
Q 045043 422 EI 423 (490)
Q Consensus 422 Ee 423 (490)
++
T Consensus 198 ~d 199 (294)
T 4hd1_A 198 DD 199 (294)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=82.01 E-value=12 Score=36.80 Aligned_cols=136 Identities=12% Similarity=0.179 Sum_probs=73.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPS 389 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~ 389 (490)
++..+.++...++.+-..+..|... .||.++|++.-..-+|.-+..+ ...| ++. .+++..+.+ -.+-+..+
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~lag-~~~~~~~~l---~~~g~~lG 200 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTGG-AEEELAERF---SHFGNALG 200 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 3555666777888888888888654 3899999987665565443222 2222 122 345544433 55667777
Q ss_pred HHHHHhhcccccc---------cCCCcchhhhhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHH
Q 045043 390 TIFRLSNDLATSK---------IGKTASSILCYMHETGL--SEEIARQHLRNMIDSCWKKMNKEWVNDQHPFVE-PFVET 457 (490)
Q Consensus 390 ~i~RL~NDI~S~k---------rG~~~n~V~cyMke~gv--S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~~p~-~~~~~ 457 (490)
...-+.||+..+. .|. .+...+|..+.+- ..+.|.+.+++.++.+.+.+. .+|. +-++.
T Consensus 201 laFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~--------~lp~~~~~~~ 271 (295)
T 3ipi_A 201 TAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE--------TFRECPARDK 271 (295)
T ss_dssp HHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT--------TSCCSHHHHH
T ss_pred HHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH--------hCCCchHHHH
Confidence 8888888887765 233 3666677655431 145555555555555554443 3442 34445
Q ss_pred HHHHhh
Q 045043 458 AFNLAR 463 (490)
Q Consensus 458 ~~n~aR 463 (490)
..++++
T Consensus 272 L~~l~~ 277 (295)
T 3ipi_A 272 LFQITD 277 (295)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=78.65 E-value=21 Score=36.14 Aligned_cols=85 Identities=12% Similarity=0.182 Sum_probs=57.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHH
Q 045043 311 IIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWP 388 (490)
Q Consensus 311 ~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s 388 (490)
..+..+.+.+..++.+-..+..|.... ||.++|++.-..-+|..+..+ ..+| ++. .+++..+.+ -.+-...
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a-~~lga~lag-a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASA-GYLGAMHAG-AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 346777888889999999999998655 999999988666666543322 1222 122 345544443 4566777
Q ss_pred HHHHHHhhcccccc
Q 045043 389 STIFRLSNDLATSK 402 (490)
Q Consensus 389 ~~i~RL~NDI~S~k 402 (490)
++..-+.||+..+.
T Consensus 233 G~aFQI~DDilD~~ 246 (360)
T 3lmd_A 233 GMIFQIVDDIIDIF 246 (360)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc
Confidence 77788888887664
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=65.22 E-value=86 Score=31.36 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHH
Q 045043 311 IIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWP 388 (490)
Q Consensus 311 ~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s 388 (490)
.++..+.++...++.+-+.+..|.. +..||.++|+..-..-+|.-+..+ ...| ++ ..+++..+.+ -.+-...
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~l 224 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSA-GVDVAKSEAL---RDYGLNL 224 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 3466677788889999998888864 345899999988666666543322 2222 12 2355544433 5667788
Q ss_pred HHHHHHhhcccccc
Q 045043 389 STIFRLSNDLATSK 402 (490)
Q Consensus 389 ~~i~RL~NDI~S~k 402 (490)
++..-+.||+..+.
T Consensus 225 G~aFQi~DD~lD~~ 238 (345)
T 3oyr_A 225 GLAFQLADDALDYG 238 (345)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcc
Confidence 88888899988775
No 22
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=64.46 E-value=1e+02 Score=30.63 Aligned_cols=86 Identities=13% Similarity=0.111 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHH
Q 045043 311 IIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWP 388 (490)
Q Consensus 311 ~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s 388 (490)
.+...+.+....++.+-..+..|.. +..||.++|++.-..-+|..+..+ ...| ++ ..+++..+.+ -.+-...
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~la-g~~~~~~~~l---~~~g~~l 212 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGGIIG-GAPEDQVQAL---FDYGDAL 212 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHH
Confidence 3456677778889999999988874 346899999987666666543222 1222 12 2345544433 4566777
Q ss_pred HHHHHHhhcccccc
Q 045043 389 STIFRLSNDLATSK 402 (490)
Q Consensus 389 ~~i~RL~NDI~S~k 402 (490)
+...-+.||+..+.
T Consensus 213 G~aFQI~DD~ld~~ 226 (341)
T 3mzv_A 213 GIAFQIVDDLLDYG 226 (341)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcc
Confidence 77888888887664
No 23
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=62.25 E-value=68 Score=31.21 Aligned_cols=116 Identities=10% Similarity=0.046 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPS 389 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~ 389 (490)
++..+.++...++.+-..+..|......||.++|+..-..-+|..+..+ ...| ++. .+++ . .-++-...+
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~-~~~ga~lag-~~~~---~---l~~~g~~lG 206 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFC-FSAPFILXG-XDHT---X---MXLLGEXFG 206 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-CCCH---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhC-CChh---H---HHHHHHHHH
Confidence 4556667778889999999999865547899999998666565443221 1111 111 2233 1 245667778
Q ss_pred HHHHHhhcccccc-----cCC-----C--cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045043 390 TIFRLSNDLATSK-----IGK-----T--ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNK 441 (490)
Q Consensus 390 ~i~RL~NDI~S~k-----rG~-----~--~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 441 (490)
...-+.||+..+. -|+ . .+...+| ..+.|.+.+++.++.+.+.+..
T Consensus 207 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 207 VAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888775 232 1 2333333 3678888899999988888764
No 24
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=61.01 E-value=1.4e+02 Score=29.79 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=39.7
Q ss_pred ccccchhhhhhHHH---HHHHHhccccCCCCchHHHHHHHHHHHHHHHHHhhcccC-CHH----HHHHHHHHhhh
Q 045043 186 LAKNLKFARDRLME---CFIWSVGMVPKPQYSNCRRALTKVAAFVTIIDYIYAVYG-TLD----ELELFTYAVER 252 (490)
Q Consensus 186 L~~~l~faRdr~~e---~yfw~~a~~feP~~s~~Rl~~aK~~~l~~iiDD~yD~~g-t~e----El~~ft~av~r 252 (490)
+...+.++++-+.. +|+++.-..+ | ..|..+.-+-.++=.+||+=|... +.+ .|+.|.+.+..
T Consensus 9 l~~~~~~C~~~l~~~srsF~la~~lLp-~---~~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~ 79 (343)
T 3vj8_A 9 LSSSLKTCYKYLNQTSRSFAAVIQALD-G---EMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQ 79 (343)
T ss_dssp CCHHHHHHHHHHHHHHGGGHHHHHTCC-T---THHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHhcCCcHHHHHHhCC-H---HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhc
Confidence 33455667665544 3555554444 3 457777888889999999999643 454 36666666653
No 25
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=58.82 E-value=1.1e+02 Score=30.23 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=56.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHH
Q 045043 311 IIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWP 388 (490)
Q Consensus 311 ~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s 388 (490)
.+...+.+....++.+-..+..|.. ...||.++|+..-..-+|..+..+. ..| ++. .+++..+.+ -.+-...
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag-~~~~~~~~l---~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACA-EAAALSVQ-VGEEEVAFA---RLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHH-HHHHHHTT-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHH-HHHHHHcC-CCHHHHHHH---HHHHHHH
Confidence 4566778888899999999998874 3458999999887766665433322 221 122 345544433 5566777
Q ss_pred HHHHHHhhcccccc
Q 045043 389 STIFRLSNDLATSK 402 (490)
Q Consensus 389 ~~i~RL~NDI~S~k 402 (490)
+...-+.||+..+.
T Consensus 207 G~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 207 GICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCC
Confidence 78888888887764
No 26
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=57.38 E-value=81 Score=31.31 Aligned_cols=108 Identities=8% Similarity=0.107 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 321 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
..++.+-..+..|... .||.++|+..-..-+|.-+..+ ...| ++...+++..+.+ -.+-...+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777788643 7899999988555555433222 2222 2222455544443 55667777788888888
Q ss_pred cccc-----cCC---------CcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 399 ATSK-----IGK---------TASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 399 ~S~k-----rG~---------~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
..+. -|+ -.+.+.+| ..|.|.+..++.++.+...+.
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKPNYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHTCC---------------CCCHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7764 111 12444444 468888888888887766554
No 27
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=52.86 E-value=1.7e+02 Score=28.99 Aligned_cols=85 Identities=12% Similarity=0.179 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPS 389 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~ 389 (490)
....+.+....++.+-+.+..|.. +..||.++|++.-..-+|..+..+ ...| ++. .+++..+.+ -.+-...+
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~g~~lG 217 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAG-APQSVIDRT---RDIGIAIG 217 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 355666777888888888887764 356899999987555555433222 2222 122 345544443 45566777
Q ss_pred HHHHHhhcccccc
Q 045043 390 TIFRLSNDLATSK 402 (490)
Q Consensus 390 ~i~RL~NDI~S~k 402 (490)
...-+.||+..+.
T Consensus 218 ~aFQi~DD~ld~~ 230 (334)
T 3pko_A 218 CAYQMLDDILDYA 230 (334)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcc
Confidence 7777788877654
No 28
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=50.93 E-value=85 Score=30.69 Aligned_cols=108 Identities=11% Similarity=0.138 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 321 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
..++.+-..+..|... .||.++|+..-..-+|..+..+ ...| ++. .+++..+.+ -++-...++..-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFA-VMSAADIAN-VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5677788888888643 7899999998666666543222 1221 122 455555443 55667778888888888
Q ss_pred cccc-----cCC-----C----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045043 399 ATSK-----IGK-----T----ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNK 441 (490)
Q Consensus 399 ~S~k-----rG~-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 441 (490)
..+. -|+ . .+.+.++- .+.|.+.+.+.++.+.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKSTYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 7664 121 1 24444432 578888888888888877763
No 29
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=50.42 E-value=1.2e+02 Score=29.63 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 321 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
..++.+-..+..|.. ..||.++|...-..-+|.-+..+ ...| ++ ..+++..+.+ -.+-...+...-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~-~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFA-LIAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 356677777777754 37899999987544444332221 1221 22 2345544433 55667778888888988
Q ss_pred cccc-----cCC-----C----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045043 399 ATSK-----IGK-----T----ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNK 441 (490)
Q Consensus 399 ~S~k-----rG~-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 441 (490)
..+. -|+ . .+...++ ..+.|.+.+.+.++++.+.++.
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKSTYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7774 121 1 2434333 4788999999999999888874
No 30
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=49.83 E-value=65 Score=31.63 Aligned_cols=108 Identities=10% Similarity=0.092 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 321 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
..++.+-..+..|. +..||.++|+..-..-+|..+..+ ...| ++...+++..+. .-++-...+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677878888886 357899999988554444433221 2222 121122332222 245667777778888888
Q ss_pred cccc-----cCC-----C----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 399 ATSK-----IGK-----T----ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 399 ~S~k-----rG~-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
..+. .|+ . .+.+.+| ..+.|.+.+.+.++.+.+.++
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 281 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKSTYPALL------GLEGAQQKAHTLLQEALLALE 281 (302)
T ss_dssp HHHTTC---------------CCCHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHHhcCCchHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7765 122 1 2444443 367888888888888877765
No 31
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=49.38 E-value=1.2e+02 Score=29.70 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhccc
Q 045043 322 DLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDLA 399 (490)
Q Consensus 322 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~ 399 (490)
.++.+-..+..|... .||.++|...-..-+|..+..+ ...| ++...+++..+.+ -.+-...+...-+.||+.
T Consensus 153 ~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDil 226 (304)
T 3lsn_A 153 GMVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDIL 226 (304)
T ss_dssp THHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 367777777788653 4899999988544444332221 1222 2222145544443 556677777788888887
Q ss_pred ccc-----cCC-----C----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 400 TSK-----IGK-----T----ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 400 S~k-----rG~-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
.+. -|+ . .+.+.+| ..+.|.+..++.++.+.+.++
T Consensus 227 D~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 227 DVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 764 122 1 2555444 468888888888887776654
No 32
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=49.08 E-value=91 Score=31.33 Aligned_cols=87 Identities=10% Similarity=0.092 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhh----------CCC-CCCHHHHHhhcccccchhHHHHHHHHhh-cCCCcHHHHHhhh
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSY----------NEY-TPTFEEYLENAWRSSSGELSLVHSYFLV-SRSINKKALESLG 379 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~----------~g~-vPs~eEYl~~~~~Ssg~~~ll~~~~~~~-g~~l~~e~~e~~~ 379 (490)
++..+.++...++.+-..+..|.. .+. .||.++|+..-..-+|..+..+. .+|. --..+++..+.+
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l- 210 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSVSDDRGLAEAA- 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHCCCHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH-
Confidence 456677788889999999999972 223 67999999886666665433221 2221 012345544433
Q ss_pred chhhhHHHHHHHHHHhhcccccc
Q 045043 380 KYHNLIRWPSTIFRLSNDLATSK 402 (490)
Q Consensus 380 ~~p~ii~~s~~i~RL~NDI~S~k 402 (490)
-.+-...++..-+.||+..+.
T Consensus 211 --~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 --WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777788877663
No 33
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=48.88 E-value=1.2e+02 Score=29.92 Aligned_cols=109 Identities=8% Similarity=0.100 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhH-HHHHHHHhhcCC-CcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGEL-SLVHSYFLVSRS-INKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 321 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~-ll~~~~~~~g~~-l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
..++.+-..+..|... ..||.++|...-..-+|.-+ +.+.+ ..++.. .+++..+.+ -.+-...+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3567777777788643 37899999987654444332 22223 333332 556655443 55667777888888888
Q ss_pred cccc-----cCC-----C----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 399 ATSK-----IGK-----T----ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 399 ~S~k-----rG~-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
..+. -|+ . .+.+.+| ..+.|.+..++.++.+.+.+.
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKTTFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHCC---------------CCCHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHhhCCCCcchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7764 121 1 2444443 478888888888887776654
No 34
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=48.67 E-value=56 Score=32.02 Aligned_cols=112 Identities=10% Similarity=0.082 Sum_probs=65.9
Q ss_pred HHHHHH--HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHH
Q 045043 315 YLTKAW--ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPST 390 (490)
Q Consensus 315 ~lke~w--~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~ 390 (490)
.+.++. ..++.+-..+..|...+..||.++|+..-..-+|.-+..+ ...| ++. .+++ . .-.+-...+.
T Consensus 139 ~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~-~~~ga~lag-~~~~---~---l~~~g~~lG~ 210 (297)
T 3m0g_A 139 ALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFA-AQAGAILAG-ADRG---P---LTAYATALGL 210 (297)
T ss_dssp HHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-CCCH---H---HHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHH-HHHHHHHcC-CCHH---H---HHHHHHHHHH
Confidence 344444 5677888888889865678999999987555555432221 1111 122 2333 1 2456677888
Q ss_pred HHHHhhcccccc-----cCC-----C----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 391 IFRLSNDLATSK-----IGK-----T----ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 391 i~RL~NDI~S~k-----rG~-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
..-+.||+..+. -|+ . .+.+.++ ..+.|.+..++.++.+.+.++
T Consensus 211 aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 211 AFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp HHHHHTTCC---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 888899998775 121 1 2444443 346788888888887776665
No 35
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=47.93 E-value=2e+02 Score=27.88 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhc
Q 045043 320 WADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSND 397 (490)
Q Consensus 320 w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~ND 397 (490)
...++.+-..+..|.. ..||.++|...-..-+|..+..+ ...| ++ ..+++..+. .-.+-...+...-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAA-LKMGCEIC-ELNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4556777777777753 46899999988555555433222 1222 12 234554433 35666778888888899
Q ss_pred ccccc-----cCCCc-------chhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 398 LATSK-----IGKTA-------SSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 398 I~S~k-----rG~~~-------n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
+..+. -|+.. +.+.++ ..+.|.+..+++++++.+.++
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 88776 23321 222221 367777888888887776665
No 36
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=45.40 E-value=1e+02 Score=30.70 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 321 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
..++.+-..+..|... .+|.++|+..-..-+|..+..+ ...| ++. .+++..+.+ -++-...++..-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a-~~~Ga~lag-a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFA-CEAGAIIAG-SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHhC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577788888888765 7899999998766666543222 1111 122 355544443 56667788888888988
Q ss_pred cccc-----cCC-----C----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 399 ATSK-----IGK-----T----ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 399 ~S~k-----rG~-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
..+. -|+ . .+...+| ..|.|.+.+.+.++.+.+.+.
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------~le~a~~~a~~~~~~A~~~L~ 314 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKGTLVALR------GEAWAREKLQEQVAEASELLA 314 (335)
T ss_dssp HHHC-----------------CCCHHHHH------CHHHHHHHHHHHHHHHHHHTG
T ss_pred HHhcCCHHHhCCCcchHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7765 121 1 2444433 267888888888888877665
No 37
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=41.29 E-value=1.3e+02 Score=29.67 Aligned_cols=107 Identities=8% Similarity=0.080 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhccc
Q 045043 322 DLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDLA 399 (490)
Q Consensus 322 ~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI~ 399 (490)
.++.+-..+..|.. ..||.++|+..-..-+|.-+..+ ...| ++...+++..+.+ -.+-...+...-+.||+.
T Consensus 152 ~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDiL 225 (317)
T 4f62_A 152 GMITGQMIDLSSEN--KNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDII 225 (317)
T ss_dssp THHHHHHHHHHTSS--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhccC--CCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 46677777777763 45999999988554444432221 2222 2232455544443 556677788888889987
Q ss_pred ccc-----cCC---------CcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 400 TSK-----IGK---------TASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 400 S~k-----rG~---------~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
.+. -|+ -.+.+.+| ..|.|.+.+++.++.+.+.++
T Consensus 226 D~~gd~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 274 (317)
T 4f62_A 226 DLTSDTETLGKTQFSDAEANKATYPKLL------GLDGAKALVVRLHEQAIAQIS 274 (317)
T ss_dssp HTC----------------CCCCHHHHH------HHHHHHHHHHHHHHHHHHHHG
T ss_pred hccCChHhhCCCcchHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 775 121 12445444 468888888888888887776
No 38
>4hrt_B Hemoglobin B chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_B*
Probab=36.11 E-value=1.8e+02 Score=24.85 Aligned_cols=125 Identities=10% Similarity=0.057 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhhCc-cccch-hhhhhHHHHHHHHhccccCCCC---ch---HHHHHHHHHHHHHHHHHhhcccCCHHH
Q 045043 171 QEEIKNLTRWWEDIDL-AKNLK-FARDRLMECFIWSVGMVPKPQY---SN---CRRALTKVAAFVTIIDYIYAVYGTLDE 242 (490)
Q Consensus 171 q~El~~lsrWw~~~~L-~~~l~-faRdr~~e~yfw~~a~~feP~~---s~---~Rl~~aK~~~l~~iiDD~yD~~gt~eE 242 (490)
.+|.+.+..=|..+.= ...++ -.-.|+.+.|-+.-. +| |.+ +. ...+-+-...++..++..-+.-+.++.
T Consensus 15 ~~~~~~I~~sw~~v~~~~~~~g~~~y~rlF~~~P~~k~-~F-~~f~~~~~~~~~~~~~~h~~~v~~al~~~v~~ldd~~~ 92 (152)
T 4hrt_B 15 ADQKDLLRMSWGVLSVDMEGTGLMLMANLFKTSPSAKG-KF-ARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVER 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHCTHHHH-HT-GGGCCCC---CCHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHCHhHHH-hh-HHhCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 4566677777777632 12332 223455555555544 33 322 11 222344455566777777776667777
Q ss_pred HHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHHH
Q 045043 243 LELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWAD 322 (490)
Q Consensus 243 l~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~~ 322 (490)
+..+...+-+=- ....--|++.+.+-.+|+.++.+. -|..+.+-+.++|.+
T Consensus 93 l~~~l~~L~~~H-~~~gV~p~~f~~~~~~Ll~~l~~~----------------------------lg~~~t~e~~~AW~k 143 (152)
T 4hrt_B 93 LKCVVEKFAVNH-INRQISADEFGEIVGPLRQTLKAR----------------------------MGNYFDEDTVAAWAS 143 (152)
T ss_dssp HHHHHHHHHHHH-HC-CCCHHHHGGGHHHHHHHHHHH----------------------------HGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHHHHHH----------------------------hcccCCHHHHHHHHH
Confidence 777776665421 123445888888888888887777 234457788889987
Q ss_pred HHHH
Q 045043 323 LCKS 326 (490)
Q Consensus 323 ~~~a 326 (490)
.+..
T Consensus 144 ~~~~ 147 (152)
T 4hrt_B 144 LVAV 147 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6643
No 39
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=36.04 E-value=1.7e+02 Score=28.45 Aligned_cols=108 Identities=13% Similarity=0.171 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--h-cCCCcHHHHHhhhchhhhHHHHHHHHHHhhc
Q 045043 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--V-SRSINKKALESLGKYHNLIRWPSTIFRLSND 397 (490)
Q Consensus 321 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~-g~~l~~e~~e~~~~~p~ii~~s~~i~RL~ND 397 (490)
..++.+-..+..|... .+|.++|+..-..-+|..+..+ ...| + +. .+++..+. .-++-...+...-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~ag-~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAGD-KGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTH-HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567788888888644 7899999998655555443221 2221 1 11 23443333 35566777888888898
Q ss_pred ccccc-----cCC---------CcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045043 398 LATSK-----IGK---------TASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNK 441 (490)
Q Consensus 398 I~S~k-----rG~---------~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 441 (490)
+..+. -|+ -.+...+| ..+.|.+.+++.++.+.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCCCHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 87765 232 12444443 2577888899999999888875
No 40
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=35.95 E-value=1.3e+02 Score=29.91 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPS 389 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~ 389 (490)
++..+.+....++.+-..+..|.... ..|.++|++.-..-+|..+..+ ..+| ++. .+++..+.+ -.+-...+
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag-~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEAS-AKVGGIIGT-DNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 35666777788999999999997543 4599999998666666543332 2222 122 355544443 56667778
Q ss_pred HHHHHhhcccccc
Q 045043 390 TIFRLSNDLATSK 402 (490)
Q Consensus 390 ~i~RL~NDI~S~k 402 (490)
...-+.||+..+.
T Consensus 212 ~aFQI~DD~lD~~ 224 (342)
T 1wy0_A 212 IAFQIWDDVLDLI 224 (342)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 8888888887764
No 41
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=35.57 E-value=1.6e+02 Score=29.27 Aligned_cols=85 Identities=13% Similarity=0.109 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPS 389 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~ 389 (490)
++..+.+....++.+-..+..|... ..||.++|+..-..-+|..+..+. ..| ++. .+++..+.+ -.+-...+
T Consensus 154 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag-~~~~~~~~l---~~~g~~lG 227 (348)
T 3apz_A 154 VVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSC-KAVAVLTG-QTAEVAVLA---FEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHH-HHHHHTTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC-cCHHHHHHH---HHHHHHHH
Confidence 4556667778888888887777532 357999999875555554432221 111 222 345544432 45666777
Q ss_pred HHHHHhhcccccc
Q 045043 390 TIFRLSNDLATSK 402 (490)
Q Consensus 390 ~i~RL~NDI~S~k 402 (490)
+..-+.||+..+.
T Consensus 228 ~aFQi~DD~lD~~ 240 (348)
T 3apz_A 228 LAFQLIDDILDFT 240 (348)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 7777888887764
No 42
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=35.29 E-value=26 Score=25.49 Aligned_cols=32 Identities=19% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhhccCCccchhhhHHHHHhc
Q 045043 6 RAKELEEEVKFMINNENGEMLPILELIDDVQRL 38 (490)
Q Consensus 6 ~~~~lk~~v~~~l~~~~~d~~~~l~liD~lqrL 38 (490)
++.=|.+|||..|..+. +.++++.+..+||-|
T Consensus 17 eIRwlIeE~Rh~Lk~Te-nsfeQItfmqalQLl 48 (58)
T 1pd3_A 17 EIRWLIEEVRHRLKITE-NSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHTCCCCT-TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh-chHHHHHHHHHHHHH
Confidence 44456788888887766 899999999999864
No 43
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=34.89 E-value=1.4e+02 Score=29.37 Aligned_cols=109 Identities=12% Similarity=0.054 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHH-HhhhchhhhHHHHHHHHHHhh
Q 045043 320 WADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKAL-ESLGKYHNLIRWPSTIFRLSN 396 (490)
Q Consensus 320 w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~-e~~~~~p~ii~~s~~i~RL~N 396 (490)
...++.+-..+..|. +..||.++|+..-..-+|..+..+ ...| ++. .+++.. +.+ -.+-...+...-+.|
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~lga~lag-a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISAS-LIMGLVASG-IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC-CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHcC-CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345677777777776 467899999987554555432221 1111 122 234433 332 556677788888889
Q ss_pred cccccc-----cCCCcchhhhhhhcCCC------CHHHHHHHHHHHHHHHHHHHH
Q 045043 397 DLATSK-----IGKTASSILCYMHETGL------SEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 397 DI~S~k-----rG~~~n~V~cyMke~gv------S~EeA~~~i~~~i~~~wk~ln 440 (490)
|+..+. -|+.... ++... ..+.|.+..+++++++.+.+.
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988775 3443221 33333 357788888888887776665
No 44
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=33.37 E-value=2.7e+02 Score=27.53 Aligned_cols=109 Identities=9% Similarity=0.112 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 321 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
..++.+-..+..|... ..||.++|...-..-+|.-+..+ ...| ++ ..+++..+.+ -.+-...+...-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3567787888888643 36899999988544444332221 2222 22 2345544433 55667777888888888
Q ss_pred cccc-----cCC-----C----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045043 399 ATSK-----IGK-----T----ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNK 441 (490)
Q Consensus 399 ~S~k-----rG~-----~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~ 441 (490)
..+. -|+ . .+...+| ..+.|.+.+++.++.+.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKNNYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC-----------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 7764 121 1 2444433 4688999999999988888763
No 45
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=30.55 E-value=1.5e+02 Score=29.67 Aligned_cols=86 Identities=19% Similarity=0.108 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhh-cCCCcHHHHHhhhchhhhHHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLV-SRSINKKALESLGKYHNLIRWPST 390 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~-g~~l~~e~~e~~~~~p~ii~~s~~ 390 (490)
++..+.+....++.+-..+..|... ..||.++|+..-..-+|..+..+ ..+|+ --..+++..+.+ -.+-...++
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag~~~~~~~~l---~~~g~~lG~ 218 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGAVLGGADERTADTL---EKYGYHLGL 218 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcCCCHHHHHHH---HHHHHHHHH
Confidence 3556777788999999999999754 36899999987666666543322 22221 012355544443 456677778
Q ss_pred HHHHhhcccccc
Q 045043 391 IFRLSNDLATSK 402 (490)
Q Consensus 391 i~RL~NDI~S~k 402 (490)
..-+.||+..+.
T Consensus 219 aFQi~DD~ld~~ 230 (352)
T 3nf2_A 219 AFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 888888887663
No 46
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=29.72 E-value=3.2e+02 Score=26.69 Aligned_cols=107 Identities=9% Similarity=0.011 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 321 ADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 321 ~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
..++.+-..+..|.. ..||.++|...-..-+|.-+..+ ...| ++. .+++..+. .-.+-...+...-+.||+
T Consensus 155 ~~m~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~a-~~~ga~lag-a~~~~~~~---l~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 155 SGMVAGQAKDIQSEH--VNLPLSQLRVLHKEKTGALLHYA-VQAGLILGQ-APEAQWPA---YLQFADAFGLAFQIYDDI 227 (309)
T ss_dssp TTHHHHHHHHHHTTT--CCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCGGGHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccC--CCCCHHHHHHHHHhccHHHHHHH-HHHHHHHcC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 346667777777753 36899999988544444432221 1221 222 24443333 245667777777788888
Q ss_pred cccc-----cC-----CC----cchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 399 ATSK-----IG-----KT----ASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 399 ~S~k-----rG-----~~----~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
..+. -| |. .+.+.+| ..+.|.+..+++++++.+.+.
T Consensus 228 LD~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 228 LDVVSSPAEMGKATQKDADEAKNTYPGKL------GLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHHCC-----------CTTTSSSHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 7764 11 21 1334332 367788888888888877766
No 47
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=27.17 E-value=1.5e+02 Score=29.48 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCHHHHHhhcccccchhHHHHHHHHh-hcCCCcHHHHHhhhchhhhHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNE--YTPTFEEYLENAWRSSSGELSLVHSYFL-VSRSINKKALESLGKYHNLIRWP 388 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g--~vPs~eEYl~~~~~Ssg~~~ll~~~~~~-~g~~l~~e~~e~~~~~p~ii~~s 388 (490)
....+.+....++.+-..+..|.... ..||.++|+..-..-+|..+.++...-+ ++. .+++ . ...-.+-...
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~-~---~~l~~~g~~l 206 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP-SSHH-G---HSLVPFINLL 206 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC-C----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CcHH-H---HHHHHHHHHH
Confidence 35556677888999999999998765 5789999999876666654332221111 121 1221 2 2235677888
Q ss_pred HHHHHHhhcccccc
Q 045043 389 STIFRLSNDLATSK 402 (490)
Q Consensus 389 ~~i~RL~NDI~S~k 402 (490)
++..-+.||+..+.
T Consensus 207 G~aFQi~DD~ld~~ 220 (340)
T 2e8v_A 207 GIIYQIRDDYLNLK 220 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 88888899988764
No 48
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=25.57 E-value=3.1e+02 Score=26.53 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=55.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHh-hcCCCcHHHHHhhhchhhhHHHHH
Q 045043 311 IIIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFL-VSRSINKKALESLGKYHNLIRWPS 389 (490)
Q Consensus 311 ~~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~-~g~~l~~e~~e~~~~~p~ii~~s~ 389 (490)
.....+.+.+..++.+-..+..|......||.++|+..-..-+|..+.++...-+ ++. .++. .-.+-...+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~~-------l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKED-------LKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCSC-------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChHH-------HHHHHHHHH
Confidence 3456677888899999999999987666899999999877666654333221111 121 2211 245566777
Q ss_pred HHHHHhhcccccc
Q 045043 390 TIFRLSNDLATSK 402 (490)
Q Consensus 390 ~i~RL~NDI~S~k 402 (490)
...-+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 7778888887653
No 49
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=24.42 E-value=2.3e+02 Score=27.69 Aligned_cols=87 Identities=11% Similarity=0.207 Sum_probs=55.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHhhcccccchhHHHHHHHHhhcCCCcHHHHHhhhchhhhHHHHHHH
Q 045043 312 IIPYLTKAWADLCKSFLQEAKWSYNEYTPTFEEYLENAWRSSSGELSLVHSYFLVSRSINKKALESLGKYHNLIRWPSTI 391 (490)
Q Consensus 312 ~~~~lke~w~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~Ssg~~~ll~~~~~~~g~~l~~e~~e~~~~~p~ii~~s~~i 391 (490)
+...+.+....++.+-..+..|... ..||.++|++.-..-+|..+..+...-+.--..+++..+.+ -.+-...+..
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~a 206 (325)
T 3aqb_B 131 FHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQSTYHI---KQFGHCIGMS 206 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHH
Confidence 4566677778899999999998753 35899999998766666543332211111112355544443 5566777777
Q ss_pred HHHhhcccccc
Q 045043 392 FRLSNDLATSK 402 (490)
Q Consensus 392 ~RL~NDI~S~k 402 (490)
.-+.||+..+.
T Consensus 207 fQi~DD~ld~~ 217 (325)
T 3aqb_B 207 YQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 77888887664
No 50
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=23.87 E-value=62 Score=25.08 Aligned_cols=23 Identities=22% Similarity=0.344 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 045043 417 TGLSEEIARQHLRNMIDSCWKKM 439 (490)
Q Consensus 417 ~gvS~EeA~~~i~~~i~~~wk~l 439 (490)
||.+.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888654
No 51
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=23.66 E-value=91 Score=30.35 Aligned_cols=108 Identities=9% Similarity=0.064 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhhCC-CCCCHHHHHhhcccccchhHHHHHHHHh--hcCCCcHHHHHhhhchhhhHHHHHHHHHHhhcc
Q 045043 322 DLCKSFLQEAKWSYNE-YTPTFEEYLENAWRSSSGELSLVHSYFL--VSRSINKKALESLGKYHNLIRWPSTIFRLSNDL 398 (490)
Q Consensus 322 ~~~~a~l~EAkW~~~g-~vPs~eEYl~~~~~Ssg~~~ll~~~~~~--~g~~l~~e~~e~~~~~p~ii~~s~~i~RL~NDI 398 (490)
.++.+-..+..|...+ ..+|.++|+..-..-+|..+..+ ...| ++. .+++..+.+ -.+-...+...-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a-~~~ga~lag-~~~~~~~~l---~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEAS-AVLGGIIGG-GSDEEIERL---RKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHTT-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566666666665321 34688999987444444332221 1222 222 355544443 56677788888889999
Q ss_pred cccccCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 045043 399 ATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMN 440 (490)
Q Consensus 399 ~S~krG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln 440 (490)
..+....-.+...+| ..|.|.+.+.+.++.+.+.+.
T Consensus 236 LD~~~~~K~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 271 (293)
T 2j1p_A 236 LDVTKSSKLTYPKLM------GLEKSREFAEKLNTEARDQLL 271 (293)
T ss_dssp HHHHC--CCCHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHccCCccccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 877611133544444 467788888888887776654
No 52
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET: HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Probab=20.64 E-value=3.8e+02 Score=22.54 Aligned_cols=126 Identities=11% Similarity=0.044 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhhhCc-cccch-hhhhhHHHHHHHHhccccCCCC---c---hHHHHHHHHHHHHHHHHHhhcccCCHH
Q 045043 170 YQEEIKNLTRWWEDIDL-AKNLK-FARDRLMECFIWSVGMVPKPQY---S---NCRRALTKVAAFVTIIDYIYAVYGTLD 241 (490)
Q Consensus 170 hq~El~~lsrWw~~~~L-~~~l~-faRdr~~e~yfw~~a~~feP~~---s---~~Rl~~aK~~~l~~iiDD~yD~~gt~e 241 (490)
-.+|.+.+..-|..+.= ...++ -.-.|+.+.|-+.-. +| |.+ + ..-..-+....++..++..-+.-+.++
T Consensus 12 s~~~~~~v~~sw~~v~~~~~~~g~~~~~rlF~~~P~~k~-~F-~~~~d~~~~~~n~~~~~h~~~v~~al~~~v~~ldd~~ 89 (150)
T 1sct_A 12 SEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKT-YF-TRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDPS 89 (150)
T ss_dssp CHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGG-GG-CTTCCGGGGGGSHHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHChhHHH-HH-HHhCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 46677788888877632 12332 223455555555544 44 443 2 111223445566667777766666677
Q ss_pred HHHHHHHHhhhcCcccccCCChhHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHhcCcccHHHHHHHHH
Q 045043 242 ELELFTYAVERWDINAVNDLPNYMKLSFLALYNTINEMAYDILKQHISFPALYNTVNEMAYDILKQHGEIIIPYLTKAWA 321 (490)
Q Consensus 242 El~~ft~av~rWd~~~~~~lPe~mk~~~~al~~~~~e~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lke~w~ 321 (490)
.+......+-+=-.. ..--|++.+.+-.+|+.++.+. -|..+.+-..++|.
T Consensus 90 ~l~~~l~~L~~~H~~-~gV~p~~f~~~~~~ll~~l~~~----------------------------lg~~~t~e~~~AW~ 140 (150)
T 1sct_A 90 RLKCVVEKFAVNHIN-RKISGDAFGAIVEPMKETLKAR----------------------------MGNYYSDDVAGAWA 140 (150)
T ss_dssp HHHHHHHHHHHHHHH-TTCCHHHHGGGHHHHHHHHHHH----------------------------HGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHH----------------------------hcccCCHHHHHHHH
Confidence 777666666542211 3445888888888888877776 23345777888998
Q ss_pred HHHHH
Q 045043 322 DLCKS 326 (490)
Q Consensus 322 ~~~~a 326 (490)
+.+..
T Consensus 141 k~~~~ 145 (150)
T 1sct_A 141 ALVGV 145 (150)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
No 53
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=20.02 E-value=85 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHHHhhcccccccCCCcchhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045043 390 TIFRLSNDLATSKIGKTASSILCYMHETGLSEEIARQHLRNMIDSCWKKMNKEWVNDQ 447 (490)
Q Consensus 390 ~i~RL~NDI~S~krG~~~n~V~cyMke~gvS~EeA~~~i~~~i~~~wk~ln~e~l~~~ 447 (490)
.-++|+=||+- .+...|-++.|+|.++|++.|.+ .||.|.-.|+
T Consensus 48 ~WG~lLaDlar-------HaA~a~a~~~~~s~~eal~rI~e-------gF~~El~~pt 91 (101)
T 3ic3_A 48 MWGLLLVDIAR-------HAARSYARESEYTEDEALERIVE-------MFEAELSRPT 91 (101)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHTSSCCHHHHHHHHHH-------HHHHHHTSCC
T ss_pred HHHHHHHHHHH-------HHHHHHHHhcCCCHHHHHHHHHH-------HHHHHhcCCc
Confidence 44677777762 23446778999999999998877 5667776665
Done!