BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045044
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AI0|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With
           Para-Nitrophenyl-Beta-D-Glucopyranoside
 pdb|3VIM|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With A New
           Glucopyranosidic Product
 pdb|3VIN|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With A New
           Glucopyranosidic Product
 pdb|3VIO|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With A New
           Glucopyranosidic Product
 pdb|3VIP|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With A New
           Glucopyranosidic Product
          Length = 487

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 8   LAKEGDYAVLLDNKLGQTKFDGGYVHNGLLKATRWVFDAKCEFLRGLVD 56
             +EGDY  +L +++ +   D GY  + L + T      + E++RG  D
Sbjct: 267 FTEEGDYPAVLKDRVSRNSADEGYTDSRLPQFTA----EEVEYIRGTHD 311


>pdb|3VIK|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With Cellobiose
 pdb|3VIL|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With Salicin
          Length = 487

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 8   LAKEGDYAVLLDNKLGQTKFDGGYVHNGLLKATRWVFDAKCEFLRGLVD 56
             +EGDY  +L +++ +   D GY  + L + T      + E++RG  D
Sbjct: 267 FTEEGDYPAVLKDRVSRNSADEGYTDSRLPQFTA----EEVEYIRGTHD 311


>pdb|3VIJ|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With Glucose
          Length = 487

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 8   LAKEGDYAVLLDNKLGQTKFDGGYVHNGLLKATRWVFDAKCEFLRGLVD 56
             +EGDY  +L +++ +   D GY  + L + T      + E++RG  D
Sbjct: 267 FTEEGDYPAVLKDRVSRNSADEGYTDSRLPQFTA----EEVEYIRGTHD 311


>pdb|3AHZ|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With Tris
 pdb|3VIF|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With Gluconolactone
 pdb|3VIG|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With 1-Deoxynojirimycin
 pdb|3VIH|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With Glycerol
 pdb|3VII|A Chain A, Crystal Structure Of Beta-Glucosidase From Termite
           Neotermes Koshunensis In Complex With Bis-Tris
          Length = 487

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 8   LAKEGDYAVLLDNKLGQTKFDGGYVHNGLLKATRWVFDAKCEFLRGLVD 56
             +EGDY  +L +++ +   D GY  + L + T      + E++RG  D
Sbjct: 267 FTEEGDYPAVLKDRVSRNSADEGYTDSRLPQFTA----EEVEYIRGTHD 311


>pdb|3C37|A Chain A, X-ray Structure Of The Putative Zn-dependent Peptidase
           Q74d82 At The Resolution 1.7 A. Northeast Structural
           Genomics Consortium Target Gsr143a
 pdb|3C37|B Chain B, X-ray Structure Of The Putative Zn-dependent Peptidase
           Q74d82 At The Resolution 1.7 A. Northeast Structural
           Genomics Consortium Target Gsr143a
          Length = 253

 Score = 26.2 bits (56), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 11/64 (17%)

Query: 9   AKEGDYA--VLLDNKLGQTKFDGG--YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLT 64
           A E DY   V+ D+ +      GG  YVH GLLKA     D + E L G++   +N+ + 
Sbjct: 59  AVEFDYVFKVVKDDSVNAFAIPGGRVYVHTGLLKAA----DNETE-LAGVLAHEINHAV- 112

Query: 65  FARH 68
            ARH
Sbjct: 113 -ARH 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.142    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,216,792
Number of Sequences: 62578
Number of extensions: 102011
Number of successful extensions: 207
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)