BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045044
         (122 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O69460|RECG_MYCLE ATP-dependent DNA helicase RecG OS=Mycobacterium leprae (strain TN)
           GN=recG PE=3 SV=2
          Length = 743

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 20  NKLGQTKFDGGYVHNGLLKATRWVFDAKCEFLRGLV 55
           NK+  T F+ GY+  GL K TR +   +  F RG++
Sbjct: 92  NKVIATFFNAGYISKGLTKDTRVMLSGEVGFFRGVM 127


>sp|Q0CBM7|FAEA_ASPTN Probable feruloyl esterase A OS=Aspergillus terreus (strain NIH
           2624 / FGSC A1156) GN=faeA PE=3 SV=1
          Length = 281

 Score = 29.6 bits (65), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 24/53 (45%)

Query: 25  TKFDGGYVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVAL 77
           ++  G  VH G       V D     ++   D+  +YTLT   HSLGA +  L
Sbjct: 110 SECSGCEVHGGYFIGWSSVQDQVMSLVKEQADQYPDYTLTVTGHSLGASMATL 162


>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus
           GN=Oma1 PE=3 SV=1
          Length = 504

 Score = 28.9 bits (63), Expect = 9.0,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 34  NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIK 93
           N L +   W   A C     L   N N+ L+   H          V+++ +NL     +K
Sbjct: 20  NTLARRRTWTPPAGCPLASRLPAVNANWGLSTVSHCYS-------VILLPRNLHFCRTLK 72

Query: 94  RNKIRCFAIAPTKCMSLNLAVRYEWIING 122
             + RC + A +K M +   + Y W + G
Sbjct: 73  NKRSRCLSSAQSKEMGV---LTYNWTVWG 98


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.143    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,117,235
Number of Sequences: 539616
Number of extensions: 1599190
Number of successful extensions: 4134
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4130
Number of HSP's gapped (non-prelim): 6
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)