Query 045044
Match_columns 122
No_of_seqs 103 out of 1037
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:19:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02847 triacylglycerol lipas 100.0 2.5E-31 5.5E-36 221.3 8.6 112 1-122 182-306 (633)
2 PF01764 Lipase_3: Lipase (cla 100.0 1.8E-29 4E-34 174.8 6.9 109 1-117 2-116 (140)
3 cd00519 Lipase_3 Lipase (class 100.0 1.3E-28 2.9E-33 184.2 10.0 105 1-115 67-176 (229)
4 PLN02934 triacylglycerol lipas 99.9 6E-27 1.3E-31 192.7 10.2 112 1-118 225-376 (515)
5 PLN02162 triacylglycerol lipas 99.9 1.1E-26 2.5E-31 189.5 9.6 114 1-118 202-333 (475)
6 PLN02408 phospholipase A1 99.9 1.9E-26 4.2E-31 184.3 8.7 109 1-118 122-252 (365)
7 PLN02454 triacylglycerol lipas 99.9 2.7E-26 5.8E-31 185.6 9.5 111 1-118 134-282 (414)
8 PLN02310 triacylglycerol lipas 99.9 1.9E-26 4.1E-31 186.2 8.6 109 1-119 136-261 (405)
9 PLN02719 triacylglycerol lipas 99.9 6.5E-26 1.4E-30 186.6 10.3 115 1-119 217-357 (518)
10 PLN00413 triacylglycerol lipas 99.9 4.5E-26 9.7E-31 186.4 8.5 112 1-118 204-339 (479)
11 PLN02802 triacylglycerol lipas 99.9 7.2E-26 1.6E-30 186.2 8.9 109 1-118 255-382 (509)
12 PLN02753 triacylglycerol lipas 99.9 9.6E-26 2.1E-30 186.1 9.5 114 1-118 231-370 (531)
13 PLN02324 triacylglycerol lipas 99.9 1E-25 2.2E-30 182.2 9.0 114 1-118 136-276 (415)
14 PLN02571 triacylglycerol lipas 99.9 1.7E-25 3.6E-30 181.1 9.1 115 1-119 149-287 (413)
15 PLN02761 lipase class 3 family 99.9 1.8E-25 3.9E-30 184.3 9.2 115 1-119 216-354 (527)
16 PLN03037 lipase class 3 family 99.9 2E-25 4.3E-30 184.0 8.1 110 1-119 239-371 (525)
17 KOG4569 Predicted lipase [Lipi 99.9 8E-24 1.7E-28 168.0 5.5 111 1-119 109-225 (336)
18 cd00741 Lipase Lipase. Lipase 99.8 5.5E-19 1.2E-23 124.9 9.8 74 34-113 1-74 (153)
19 KOG2088 Predicted lipase/calmo 99.5 1.3E-15 2.8E-20 128.6 2.0 122 1-122 183-313 (596)
20 PF11187 DUF2974: Protein of u 99.0 2.4E-10 5.3E-15 86.5 4.7 86 1-109 41-126 (224)
21 COG3675 Predicted lipase [Lipi 98.8 1.3E-09 2.8E-14 85.2 1.6 87 28-120 140-229 (332)
22 COG5153 CVT17 Putative lipase 98.8 1E-08 2.2E-13 80.7 5.3 36 47-82 262-297 (425)
23 KOG4540 Putative lipase essent 98.8 1E-08 2.2E-13 80.7 5.3 36 47-82 262-297 (425)
24 PF05057 DUF676: Putative seri 98.1 1.4E-05 3.1E-10 59.7 6.8 80 29-110 48-129 (217)
25 PF07819 PGAP1: PGAP1-like pro 98.0 1.9E-05 4.2E-10 59.6 5.9 56 48-110 67-127 (225)
26 COG3675 Predicted lipase [Lipi 97.8 1.5E-05 3.2E-10 62.7 3.1 68 31-115 223-290 (332)
27 KOG2088 Predicted lipase/calmo 97.6 1.1E-05 2.5E-10 68.7 -0.4 102 1-122 321-431 (596)
28 TIGR01607 PST-A Plasmodium sub 97.4 0.00028 6.1E-09 55.7 5.2 49 34-82 95-163 (332)
29 COG2267 PldB Lysophospholipase 97.4 0.0003 6.4E-09 55.2 5.0 50 33-82 79-128 (298)
30 PLN02733 phosphatidylcholine-s 97.4 0.00058 1.3E-08 56.6 6.9 63 44-112 145-207 (440)
31 PRK10985 putative hydrolase; P 97.3 0.00065 1.4E-08 53.2 6.6 56 45-108 115-170 (324)
32 PHA02857 monoglyceride lipase; 97.3 0.00058 1.3E-08 51.4 5.8 38 43-80 79-116 (276)
33 PRK10749 lysophospholipase L2; 97.3 0.00051 1.1E-08 53.8 5.6 43 38-80 108-150 (330)
34 PF01083 Cutinase: Cutinase; 97.3 0.00096 2.1E-08 48.7 6.4 68 35-108 55-124 (179)
35 PRK11126 2-succinyl-6-hydroxy- 97.2 0.00066 1.4E-08 49.7 5.2 38 45-82 50-87 (242)
36 PLN02965 Probable pheophorbida 97.2 0.0006 1.3E-08 51.0 5.0 36 45-80 55-91 (255)
37 PF12697 Abhydrolase_6: Alpha/ 97.2 0.0014 3.1E-08 45.9 6.5 33 47-79 52-84 (228)
38 TIGR02427 protocat_pcaD 3-oxoa 97.2 0.00083 1.8E-08 48.0 5.1 35 47-81 65-99 (251)
39 KOG2564 Predicted acetyltransf 97.2 0.00039 8.4E-09 54.9 3.5 38 40-78 126-163 (343)
40 PLN02824 hydrolase, alpha/beta 97.2 0.00072 1.6E-08 51.5 4.9 36 46-81 87-122 (294)
41 cd00707 Pancreat_lipase_like P 97.2 0.00096 2.1E-08 51.6 5.6 38 45-82 94-133 (275)
42 PRK10673 acyl-CoA esterase; Pr 97.1 0.00096 2.1E-08 49.1 5.1 35 47-81 67-101 (255)
43 TIGR03695 menH_SHCHC 2-succiny 97.1 0.0012 2.5E-08 47.0 5.3 31 51-81 60-90 (251)
44 PF00561 Abhydrolase_1: alpha/ 97.1 0.00096 2.1E-08 47.7 4.8 37 45-81 28-64 (230)
45 PRK11071 esterase YqiA; Provis 97.1 0.0011 2.4E-08 48.5 5.0 36 46-81 46-81 (190)
46 PLN02298 hydrolase, alpha/beta 97.1 0.0013 2.9E-08 51.0 5.5 40 41-80 112-153 (330)
47 TIGR02240 PHA_depoly_arom poly 97.0 0.0012 2.6E-08 49.9 5.0 37 45-81 75-111 (276)
48 PLN02652 hydrolase; alpha/beta 97.0 0.00097 2.1E-08 54.2 4.5 40 40-79 187-226 (395)
49 KOG3724 Negative regulator of 97.0 0.0018 3.8E-08 57.1 5.8 73 37-117 153-236 (973)
50 TIGR01250 pro_imino_pep_2 prol 96.9 0.0019 4.2E-08 47.3 5.1 35 47-81 82-116 (288)
51 PLN02385 hydrolase; alpha/beta 96.9 0.002 4.4E-08 50.7 5.6 38 43-80 142-181 (349)
52 PF02450 LCAT: Lecithin:choles 96.9 0.003 6.5E-08 51.2 6.6 67 42-113 101-167 (389)
53 PLN02511 hydrolase 96.9 0.0029 6.3E-08 51.1 6.4 34 45-78 157-190 (388)
54 TIGR03611 RutD pyrimidine util 96.9 0.0021 4.5E-08 46.5 5.1 36 46-81 65-100 (257)
55 PRK00870 haloalkane dehalogena 96.8 0.0024 5.2E-08 48.9 5.2 37 45-81 99-135 (302)
56 PF00975 Thioesterase: Thioest 96.8 0.007 1.5E-07 44.2 7.5 37 49-85 54-90 (229)
57 TIGR03056 bchO_mg_che_rel puta 96.8 0.0022 4.8E-08 47.4 4.8 34 47-80 81-114 (278)
58 KOG1455 Lysophospholipase [Lip 96.8 0.0014 3.1E-08 51.9 3.6 43 39-81 105-149 (313)
59 TIGR01836 PHA_synth_III_C poly 96.7 0.0038 8.3E-08 49.2 5.8 33 47-79 122-154 (350)
60 PLN02211 methyl indole-3-aceta 96.7 0.0033 7.3E-08 48.1 5.2 33 49-81 74-107 (273)
61 TIGR03100 hydr1_PEP hydrolase, 96.6 0.0046 1E-07 47.3 5.4 37 43-79 81-118 (274)
62 PRK03204 haloalkane dehalogena 96.6 0.0042 9.1E-08 47.6 5.1 35 46-80 86-120 (286)
63 PRK10566 esterase; Provisional 96.6 0.0064 1.4E-07 45.0 5.9 35 45-79 89-125 (249)
64 PRK03592 haloalkane dehalogena 96.6 0.0048 1E-07 47.0 5.1 34 48-81 80-113 (295)
65 TIGR03343 biphenyl_bphD 2-hydr 96.5 0.0038 8.2E-08 46.7 4.2 32 49-80 89-120 (282)
66 TIGR01249 pro_imino_pep_1 prol 96.4 0.0065 1.4E-07 46.9 5.2 36 47-82 81-116 (306)
67 PLN02679 hydrolase, alpha/beta 96.4 0.0095 2.1E-07 47.4 6.0 34 47-80 141-174 (360)
68 PRK14875 acetoin dehydrogenase 96.3 0.0076 1.7E-07 47.0 5.2 35 46-80 182-216 (371)
69 PLN02442 S-formylglutathione h 96.3 0.0078 1.7E-07 46.5 5.1 40 41-80 123-162 (283)
70 PRK13604 luxD acyl transferase 96.3 0.013 2.8E-07 46.6 6.3 34 45-79 93-126 (307)
71 TIGR01392 homoserO_Ac_trn homo 96.3 0.0086 1.9E-07 47.2 5.2 37 45-81 110-147 (351)
72 PF06028 DUF915: Alpha/beta hy 96.3 0.015 3.2E-07 45.0 6.3 65 34-108 80-145 (255)
73 TIGR01838 PHA_synth_I poly(R)- 96.2 0.019 4.2E-07 48.7 7.2 35 45-79 246-280 (532)
74 PF06259 Abhydrolase_8: Alpha/ 96.2 0.021 4.5E-07 42.0 6.3 55 45-109 92-147 (177)
75 PF07859 Abhydrolase_3: alpha/ 96.1 0.02 4.3E-07 41.4 5.8 28 58-85 68-95 (211)
76 PF00151 Lipase: Lipase; Inte 96.1 0.013 2.8E-07 46.8 5.2 41 44-84 131-173 (331)
77 PF05728 UPF0227: Uncharacteri 96.0 0.015 3.4E-07 42.8 5.2 36 47-82 45-80 (187)
78 PF12695 Abhydrolase_5: Alpha/ 96.0 0.014 3.1E-07 39.1 4.7 22 59-80 59-80 (145)
79 PRK08775 homoserine O-acetyltr 96.0 0.012 2.7E-07 46.2 4.9 36 47-82 123-159 (343)
80 TIGR01840 esterase_phb esteras 95.9 0.016 3.4E-07 42.6 4.8 33 48-80 80-114 (212)
81 TIGR01738 bioH putative pimelo 95.9 0.013 2.8E-07 41.7 4.3 20 61-80 65-84 (245)
82 TIGR03101 hydr2_PEP hydrolase, 95.9 0.036 7.8E-07 43.0 7.0 34 45-79 84-117 (266)
83 TIGR02821 fghA_ester_D S-formy 95.9 0.02 4.3E-07 43.8 5.3 35 47-81 121-158 (275)
84 PTZ00472 serine carboxypeptida 95.9 0.039 8.5E-07 45.9 7.4 64 43-107 150-216 (462)
85 PLN02894 hydrolase, alpha/beta 95.8 0.022 4.8E-07 46.2 5.7 21 61-81 176-196 (402)
86 PLN00021 chlorophyllase 95.8 0.018 3.9E-07 45.6 4.9 22 61-82 126-147 (313)
87 TIGR03230 lipo_lipase lipoprot 95.8 0.022 4.8E-07 47.4 5.6 37 45-81 101-139 (442)
88 PRK11460 putative hydrolase; P 95.7 0.032 7E-07 41.8 5.8 33 47-79 87-121 (232)
89 PRK00175 metX homoserine O-ace 95.7 0.022 4.7E-07 45.7 5.1 37 46-82 131-168 (379)
90 PLN02578 hydrolase 95.6 0.023 4.9E-07 45.0 4.9 23 60-82 151-173 (354)
91 PRK10349 carboxylesterase BioH 95.6 0.02 4.4E-07 42.5 4.3 20 61-80 74-93 (256)
92 PLN03087 BODYGUARD 1 domain co 95.6 0.025 5.4E-07 47.5 5.2 29 53-81 266-294 (481)
93 PF11288 DUF3089: Protein of u 95.5 0.055 1.2E-06 40.8 6.4 60 42-105 75-135 (207)
94 PRK06489 hypothetical protein; 95.5 0.028 6.1E-07 44.5 5.0 21 61-81 153-174 (360)
95 COG0596 MhpC Predicted hydrola 95.4 0.03 6.5E-07 39.1 4.4 35 48-82 75-109 (282)
96 PF00091 Tubulin: Tubulin/FtsZ 95.4 0.1 2.2E-06 38.9 7.4 54 31-84 94-147 (216)
97 PF00326 Peptidase_S9: Prolyl 95.4 0.031 6.7E-07 40.7 4.5 39 42-80 43-83 (213)
98 PF05990 DUF900: Alpha/beta hy 95.3 0.091 2E-06 39.8 7.1 76 40-117 72-147 (233)
99 PRK05855 short chain dehydroge 95.2 0.034 7.5E-07 45.8 4.9 20 60-79 93-112 (582)
100 PRK07581 hypothetical protein; 95.2 0.045 9.7E-07 42.7 5.3 22 61-82 123-145 (339)
101 PF08237 PE-PPE: PE-PPE domain 95.2 0.15 3.2E-06 38.7 7.9 51 59-113 46-96 (225)
102 PRK06765 homoserine O-acetyltr 95.1 0.038 8.3E-07 45.0 4.8 38 45-82 144-182 (389)
103 PF05677 DUF818: Chlamydia CHL 95.0 0.048 1E-06 44.2 4.9 35 44-78 195-232 (365)
104 PF10230 DUF2305: Uncharacteri 94.9 0.05 1.1E-06 41.9 4.7 30 47-76 68-99 (266)
105 PF05448 AXE1: Acetyl xylan es 94.9 0.063 1.4E-06 42.7 5.4 60 40-112 152-214 (320)
106 COG3319 Thioesterase domains o 94.9 0.066 1.4E-06 41.5 5.2 39 47-85 51-89 (257)
107 PRK10162 acetyl esterase; Prov 94.8 0.052 1.1E-06 42.6 4.7 26 60-85 153-178 (318)
108 COG3208 GrsT Predicted thioest 94.8 0.13 2.7E-06 39.8 6.5 52 31-85 47-98 (244)
109 PF00756 Esterase: Putative es 94.8 0.052 1.1E-06 40.3 4.4 39 40-79 95-133 (251)
110 KOG4409 Predicted hydrolase/ac 94.5 0.067 1.5E-06 43.4 4.7 38 46-83 145-182 (365)
111 KOG1454 Predicted hydrolase/ac 94.5 0.067 1.5E-06 42.5 4.7 36 47-82 114-149 (326)
112 COG0657 Aes Esterase/lipase [L 94.5 0.17 3.7E-06 39.1 6.8 26 60-85 151-176 (312)
113 PLN02517 phosphatidylcholine-s 94.3 0.06 1.3E-06 46.5 4.2 33 45-77 197-229 (642)
114 KOG1838 Alpha/beta hydrolase [ 94.3 0.16 3.4E-06 42.0 6.5 54 45-106 182-235 (409)
115 PLN02980 2-oxoglutarate decarb 94.1 0.086 1.9E-06 50.1 5.1 34 47-80 1431-1464(1655)
116 PF05277 DUF726: Protein of un 94.1 0.53 1.2E-05 38.1 9.0 57 59-120 218-274 (345)
117 PF01674 Lipase_2: Lipase (cla 94.0 0.068 1.5E-06 40.5 3.6 33 45-78 60-92 (219)
118 COG3571 Predicted hydrolase of 94.0 0.13 2.7E-06 38.1 4.7 35 50-84 78-112 (213)
119 smart00824 PKS_TE Thioesterase 93.8 0.17 3.6E-06 35.5 5.1 29 57-85 60-88 (212)
120 PLN02872 triacylglycerol lipas 93.8 0.11 2.4E-06 42.5 4.6 30 46-76 146-175 (395)
121 PF02230 Abhydrolase_2: Phosph 93.8 0.14 3.1E-06 37.6 4.8 45 33-80 80-124 (216)
122 PLN03084 alpha/beta hydrolase 93.6 0.13 2.8E-06 41.8 4.8 34 47-80 183-216 (383)
123 PF09752 DUF2048: Uncharacteri 93.4 0.26 5.7E-06 39.9 6.1 49 55-114 169-217 (348)
124 KOG2382 Predicted alpha/beta h 93.3 0.13 2.8E-06 41.1 4.2 28 45-72 107-134 (315)
125 COG1647 Esterase/lipase [Gener 93.3 0.24 5.1E-06 38.1 5.4 35 43-79 68-103 (243)
126 PF03403 PAF-AH_p_II: Platelet 92.9 0.091 2E-06 42.7 2.8 18 61-78 228-245 (379)
127 PF10503 Esterase_phd: Esteras 92.7 0.17 3.8E-06 38.2 4.0 36 47-82 81-118 (220)
128 COG3458 Acetyl esterase (deace 92.7 0.054 1.2E-06 42.8 1.3 52 29-80 137-195 (321)
129 PRK05077 frsA fermentation/res 92.6 0.23 5.1E-06 40.6 4.9 19 61-79 265-283 (414)
130 COG1075 LipA Predicted acetylt 92.4 0.34 7.3E-06 38.6 5.5 57 46-110 112-168 (336)
131 PF00450 Peptidase_S10: Serine 92.2 0.76 1.6E-05 36.5 7.3 65 44-109 116-183 (415)
132 COG0429 Predicted hydrolase of 91.8 0.55 1.2E-05 37.9 5.9 39 45-86 132-170 (345)
133 PRK04940 hypothetical protein; 91.7 0.51 1.1E-05 34.8 5.3 21 62-82 61-81 (180)
134 COG3545 Predicted esterase of 91.4 0.64 1.4E-05 34.4 5.5 34 49-83 48-81 (181)
135 KOG2369 Lecithin:cholesterol a 91.0 0.37 8E-06 40.4 4.4 30 47-76 168-197 (473)
136 TIGR03502 lipase_Pla1_cef extr 91.0 0.99 2.1E-05 40.3 7.3 23 58-80 552-574 (792)
137 COG2819 Predicted hydrolase of 90.8 0.81 1.7E-05 35.8 5.9 38 37-75 113-151 (264)
138 PRK03482 phosphoglycerate muta 90.4 0.96 2.1E-05 33.3 5.8 43 38-82 120-162 (215)
139 PRK07868 acyl-CoA synthetase; 90.3 0.65 1.4E-05 41.9 5.7 20 61-80 141-160 (994)
140 TIGR00976 /NonD putative hydro 90.2 0.43 9.3E-06 40.2 4.2 36 45-80 80-116 (550)
141 cd02189 delta_tubulin The tubu 90.0 0.56 1.2E-05 39.0 4.6 47 34-80 99-145 (446)
142 PF08840 BAAT_C: BAAT / Acyl-C 89.9 1.2 2.5E-05 33.1 5.9 29 54-82 12-43 (213)
143 PRK10439 enterobactin/ferric e 89.8 0.78 1.7E-05 37.7 5.3 41 40-80 266-307 (411)
144 cd02188 gamma_tubulin Gamma-tu 89.5 1.8 3.9E-05 35.9 7.2 51 34-85 104-158 (431)
145 cd00286 Tubulin_FtsZ Tubulin/F 89.4 0.84 1.8E-05 36.0 5.1 51 35-85 63-117 (328)
146 COG5023 Tubulin [Cytoskeleton] 89.1 0.33 7.1E-06 39.9 2.6 81 34-117 103-184 (443)
147 COG4782 Uncharacterized protei 88.9 2.2 4.7E-05 34.9 7.1 69 38-110 168-237 (377)
148 PF01738 DLH: Dienelactone hyd 88.6 0.71 1.5E-05 33.6 3.9 35 45-79 80-116 (218)
149 KOG4627 Kynurenine formamidase 88.6 1.3 2.9E-05 34.0 5.4 31 53-83 127-158 (270)
150 PRK15004 alpha-ribazole phosph 88.5 1.5 3.2E-05 31.9 5.5 43 38-82 119-161 (199)
151 PF07224 Chlorophyllase: Chlor 88.4 1 2.2E-05 35.6 4.8 46 38-83 94-142 (307)
152 TIGR03162 ribazole_cobC alpha- 88.3 1.6 3.5E-05 30.8 5.5 43 38-82 115-157 (177)
153 PRK10252 entF enterobactin syn 87.8 2.3 5E-05 38.8 7.3 28 58-85 1130-1157(1296)
154 cd06059 Tubulin The tubulin su 87.8 0.74 1.6E-05 37.3 3.8 47 32-78 60-106 (382)
155 PLN03016 sinapoylglucose-malat 87.7 1.5 3.2E-05 36.4 5.6 62 45-107 146-210 (433)
156 cd02190 epsilon_tubulin The tu 87.7 0.8 1.7E-05 37.2 4.0 47 34-80 72-118 (379)
157 PLN02213 sinapoylglucose-malat 87.6 2.5 5.4E-05 33.4 6.6 62 45-107 32-96 (319)
158 PLN02209 serine carboxypeptida 87.5 1.7 3.7E-05 36.1 5.9 62 45-107 148-212 (437)
159 KOG1552 Predicted alpha/beta h 87.5 0.76 1.6E-05 35.8 3.6 34 42-75 110-144 (258)
160 PF03959 FSH1: Serine hydrolas 87.5 1 2.2E-05 33.2 4.2 23 63-85 104-126 (212)
161 KOG3847 Phospholipase A2 (plat 87.4 0.24 5.1E-06 40.1 0.7 21 59-79 239-259 (399)
162 cd02186 alpha_tubulin The tubu 87.3 0.97 2.1E-05 37.4 4.4 46 34-79 104-149 (434)
163 KOG3101 Esterase D [General fu 87.3 0.37 8.1E-06 37.1 1.7 35 43-77 119-157 (283)
164 TIGR02802 Pal_lipo peptidoglyc 86.5 4.5 9.7E-05 26.3 6.5 52 49-105 20-82 (104)
165 PRK13463 phosphatase PhoE; Pro 86.3 2.2 4.7E-05 31.3 5.3 64 38-103 121-187 (203)
166 PLN00220 tubulin beta chain; P 86.1 1 2.2E-05 37.4 3.8 47 33-79 102-148 (447)
167 TIGR01839 PHA_synth_II poly(R) 85.9 2.8 6E-05 36.1 6.4 38 46-83 273-311 (560)
168 PF03583 LIP: Secretory lipase 85.6 5.1 0.00011 31.2 7.4 70 38-114 46-120 (290)
169 PF06821 Ser_hydrolase: Serine 85.5 0.91 2E-05 32.8 2.9 24 49-73 44-67 (171)
170 PRK10802 peptidoglycan-associa 85.2 4.6 0.0001 29.3 6.5 54 47-105 87-151 (173)
171 PTZ00335 tubulin alpha chain; 85.1 1.1 2.4E-05 37.4 3.5 47 34-80 105-151 (448)
172 PRK14119 gpmA phosphoglyceromu 84.7 2.7 5.9E-05 31.4 5.3 43 38-82 150-194 (228)
173 PLN00222 tubulin gamma chain; 84.7 4.4 9.5E-05 33.9 7.0 51 34-85 106-160 (454)
174 TIGR03848 MSMEG_4193 probable 84.1 3.4 7.3E-05 30.1 5.5 43 38-82 117-164 (204)
175 COG2945 Predicted hydrolase of 83.8 1.6 3.5E-05 32.9 3.6 37 46-82 87-124 (210)
176 COG0412 Dienelactone hydrolase 83.7 1.9 4.2E-05 32.6 4.1 36 45-81 94-132 (236)
177 COG1506 DAP2 Dipeptidyl aminop 83.5 1.9 4.1E-05 37.1 4.5 36 43-79 453-491 (620)
178 KOG1282 Serine carboxypeptidas 83.4 3.8 8.3E-05 34.4 6.1 63 45-108 149-214 (454)
179 COG4814 Uncharacterized protei 83.4 1.2 2.6E-05 35.0 2.9 27 48-74 123-149 (288)
180 PF07082 DUF1350: Protein of u 83.2 3.9 8.5E-05 31.7 5.6 55 25-82 53-111 (250)
181 PF12715 Abhydrolase_7: Abhydr 83.1 3.5 7.6E-05 34.0 5.6 27 54-80 216-245 (390)
182 PF12740 Chlorophyllase2: Chlo 83.0 1.9 4.2E-05 33.6 3.9 24 59-82 88-112 (259)
183 COG2885 OmpA Outer membrane pr 82.7 8.7 0.00019 27.8 7.2 58 46-108 100-170 (190)
184 cd02187 beta_tubulin The tubul 82.7 3.4 7.4E-05 34.1 5.5 52 34-85 102-157 (425)
185 PTZ00010 tubulin beta chain; P 82.5 4.3 9.3E-05 33.8 6.0 52 34-85 103-158 (445)
186 PF10081 Abhydrolase_9: Alpha/ 82.3 4.2 9.1E-05 32.2 5.6 42 37-80 86-127 (289)
187 COG4757 Predicted alpha/beta h 82.1 0.82 1.8E-05 35.6 1.5 43 34-79 81-123 (281)
188 PF00300 His_Phos_1: Histidine 82.0 5 0.00011 27.1 5.4 36 39-76 121-157 (158)
189 KOG2112 Lysophospholipase [Lip 81.9 2.6 5.6E-05 31.8 4.1 46 34-82 69-114 (206)
190 PRK13462 acid phosphatase; Pro 81.8 4.9 0.00011 29.6 5.6 43 38-82 117-159 (203)
191 PTZ00387 epsilon tubulin; Prov 81.2 3.9 8.5E-05 34.3 5.4 52 34-85 104-159 (465)
192 COG3150 Predicted esterase [Ge 80.9 3.4 7.4E-05 30.6 4.3 34 47-80 45-78 (191)
193 PLN00221 tubulin alpha chain; 80.6 2.2 4.9E-05 35.5 3.8 52 34-85 105-160 (450)
194 KOG1516 Carboxylesterase and r 80.5 4.3 9.3E-05 33.9 5.4 20 61-80 195-214 (545)
195 smart00864 Tubulin Tubulin/Fts 80.5 1.5 3.3E-05 32.0 2.5 43 39-84 64-106 (192)
196 KOG4372 Predicted alpha/beta h 80.1 0.59 1.3E-05 38.5 0.2 53 31-83 113-172 (405)
197 COG4188 Predicted dienelactone 79.7 2.6 5.6E-05 34.5 3.7 20 60-79 158-177 (365)
198 KOG4178 Soluble epoxide hydrol 78.9 4.4 9.5E-05 32.6 4.7 39 47-85 99-137 (322)
199 COG2382 Fes Enterochelin ester 78.8 2.7 5.8E-05 33.5 3.5 47 36-82 151-198 (299)
200 PTZ00123 phosphoglycerate muta 78.3 6.3 0.00014 29.7 5.3 43 38-82 137-181 (236)
201 PRK07238 bifunctional RNase H/ 78.0 6.2 0.00013 31.6 5.5 63 38-102 290-354 (372)
202 PF06342 DUF1057: Alpha/beta h 77.9 4.9 0.00011 31.9 4.7 35 48-82 90-125 (297)
203 COG3509 LpqC Poly(3-hydroxybut 76.8 4.6 0.0001 32.3 4.3 43 33-80 119-163 (312)
204 PLN02633 palmitoyl protein thi 76.0 6.9 0.00015 31.4 5.1 67 32-108 67-133 (314)
205 PF12048 DUF3530: Protein of u 75.8 8.5 0.00019 30.4 5.6 59 52-116 184-242 (310)
206 KOG2029 Uncharacterized conser 75.1 14 0.0003 32.4 6.9 51 60-110 525-576 (697)
207 COG0400 Predicted esterase [Ge 74.7 6.7 0.00015 29.4 4.5 30 47-76 83-114 (207)
208 cd00312 Esterase_lipase Estera 74.1 6.4 0.00014 32.3 4.7 32 49-80 162-195 (493)
209 KOG4391 Predicted alpha/beta h 74.0 2 4.3E-05 33.4 1.5 25 59-83 147-171 (300)
210 PRK14118 gpmA phosphoglyceromu 74.0 9.6 0.00021 28.5 5.3 43 38-82 149-193 (227)
211 COG0406 phoE Broad specificity 72.3 11 0.00024 27.2 5.2 67 37-105 122-190 (208)
212 PRK14116 gpmA phosphoglyceromu 72.1 11 0.00025 28.1 5.3 43 38-82 150-194 (228)
213 PRK01112 phosphoglyceromutase; 71.8 11 0.00024 28.3 5.2 41 40-82 151-193 (228)
214 KOG1515 Arylacetamide deacetyl 71.8 12 0.00026 30.1 5.6 43 37-85 147-190 (336)
215 PF10340 DUF2424: Protein of u 71.3 22 0.00047 29.2 7.0 37 48-84 182-218 (374)
216 cd07185 OmpA_C-like Peptidogly 71.2 7.7 0.00017 24.7 3.7 53 50-107 23-86 (106)
217 KOG2385 Uncharacterized conser 70.7 36 0.00077 29.6 8.3 52 61-117 447-498 (633)
218 PRK01295 phosphoglyceromutase; 69.7 14 0.0003 27.2 5.2 42 39-82 127-170 (206)
219 TIGR01258 pgm_1 phosphoglycera 69.3 15 0.00032 28.0 5.4 43 38-82 149-193 (245)
220 PF03283 PAE: Pectinacetyleste 68.7 21 0.00047 28.9 6.5 52 47-103 140-193 (361)
221 COG3673 Uncharacterized conser 68.1 28 0.00061 28.6 6.9 53 32-85 93-146 (423)
222 cd07067 HP_PGM_like Histidine 68.1 18 0.00039 24.5 5.2 57 47-105 86-144 (153)
223 PRK14115 gpmA phosphoglyceromu 68.0 17 0.00037 27.6 5.5 43 38-82 149-193 (247)
224 cd02202 FtsZ_type2 FtsZ is a G 67.9 9.3 0.0002 30.8 4.2 49 37-85 72-122 (349)
225 PF00135 COesterase: Carboxyle 67.4 5 0.00011 32.8 2.7 30 50-79 195-226 (535)
226 PF11144 DUF2920: Protein of u 66.0 15 0.00033 30.5 5.1 54 24-79 148-202 (403)
227 PF13173 AAA_14: AAA domain 65.7 7.5 0.00016 26.1 2.9 27 47-73 76-102 (128)
228 TIGR03350 type_VI_ompA type VI 64.3 43 0.00093 22.8 6.6 49 50-104 51-114 (137)
229 PF09994 DUF2235: Uncharacteri 64.2 21 0.00046 27.6 5.4 41 43-83 73-114 (277)
230 PLN02606 palmitoyl-protein thi 63.7 18 0.00038 29.0 5.0 60 41-109 74-135 (306)
231 PRK14120 gpmA phosphoglyceromu 63.2 22 0.00047 27.2 5.3 43 38-82 151-195 (249)
232 PF02089 Palm_thioest: Palmito 62.8 38 0.00083 26.7 6.7 38 62-108 81-118 (279)
233 KOG3975 Uncharacterized conser 62.4 11 0.00024 29.8 3.5 16 59-74 108-123 (301)
234 KOG2308 Phosphatidic acid-pref 61.7 8.4 0.00018 34.3 3.1 20 54-73 408-429 (741)
235 cd00394 Clp_protease_like Case 61.5 39 0.00084 23.4 6.0 37 44-80 13-49 (161)
236 PF08538 DUF1749: Protein of u 61.5 11 0.00023 30.1 3.4 31 45-75 88-122 (303)
237 PRK14117 gpmA phosphoglyceromu 61.2 26 0.00055 26.2 5.3 43 38-82 150-194 (230)
238 PF14253 AbiH: Bacteriophage a 60.7 4.8 0.0001 30.3 1.3 15 61-75 235-249 (270)
239 PF10664 NdhM: Cyanobacterial 60.7 15 0.00031 24.9 3.4 63 39-107 43-106 (108)
240 TIGR01849 PHB_depoly_PhaZ poly 60.6 37 0.0008 28.1 6.5 25 61-85 168-192 (406)
241 cd01714 ETF_beta The electron 60.1 18 0.0004 26.6 4.3 36 47-83 96-135 (202)
242 COG0627 Predicted esterase [Ge 59.3 13 0.00029 29.6 3.6 33 47-79 133-170 (316)
243 PRK08384 thiamine biosynthesis 58.2 15 0.00032 30.1 3.8 28 47-76 272-299 (381)
244 COG0331 FabD (acyl-carrier-pro 58.0 12 0.00027 29.7 3.2 13 60-72 84-96 (310)
245 PF09949 DUF2183: Uncharacteri 57.3 18 0.00038 24.1 3.4 28 46-73 50-77 (100)
246 PF06057 VirJ: Bacterial virul 56.6 47 0.001 24.8 5.9 36 47-82 54-89 (192)
247 KOG3734 Predicted phosphoglyce 56.3 27 0.00058 27.5 4.8 34 38-71 172-205 (272)
248 PF05577 Peptidase_S28: Serine 56.2 38 0.00082 27.5 5.9 31 47-77 96-129 (434)
249 KOG1578 Predicted carbonic anh 55.2 7.7 0.00017 30.5 1.6 35 48-82 141-175 (276)
250 KOG2551 Phospholipase/carboxyh 55.2 18 0.00039 27.8 3.6 35 44-80 88-123 (230)
251 PRK10510 putative outer membra 55.0 20 0.00043 27.0 3.8 53 50-105 133-194 (219)
252 TIGR00065 ftsZ cell division p 54.5 36 0.00078 27.5 5.4 44 37-83 81-124 (349)
253 COG2884 FtsE Predicted ATPase 54.0 18 0.00039 27.5 3.3 28 59-87 27-54 (223)
254 PRK07734 motB flagellar motor 54.0 91 0.002 23.8 7.4 52 49-104 162-228 (259)
255 PF03853 YjeF_N: YjeF-related 52.7 81 0.0018 22.4 7.3 69 37-117 6-75 (169)
256 PF06100 Strep_67kDa_ant: Stre 51.4 13 0.00029 31.6 2.5 28 71-101 9-36 (500)
257 TIGR00706 SppA_dom signal pept 51.3 85 0.0019 23.0 6.7 69 45-120 16-87 (207)
258 cd02201 FtsZ_type1 FtsZ is a G 49.2 50 0.0011 25.9 5.3 42 39-83 66-107 (304)
259 PRK15416 lipopolysaccharide co 47.8 22 0.00048 26.6 3.0 30 48-79 139-168 (201)
260 cd07040 HP Histidine phosphata 47.2 61 0.0013 21.4 5.0 35 47-83 84-120 (153)
261 PRK13320 pantothenate kinase; 46.9 46 0.001 25.4 4.7 33 32-67 179-211 (244)
262 PF02568 ThiI: Thiamine biosyn 46.8 25 0.00053 26.2 3.1 22 53-76 102-123 (197)
263 KOG2183 Prolylcarboxypeptidase 46.7 37 0.00081 28.7 4.4 51 31-86 136-188 (492)
264 TIGR02529 EutJ ethanolamine ut 45.5 1.1E+02 0.0023 23.1 6.5 27 41-67 176-202 (239)
265 PF00691 OmpA: OmpA family; I 45.4 40 0.00086 21.1 3.6 45 58-105 29-81 (97)
266 smart00855 PGAM Phosphoglycera 44.7 38 0.00083 23.0 3.7 31 39-69 117-149 (155)
267 KOG2624 Triglyceride lipase-ch 44.6 16 0.00036 30.2 2.0 29 48-76 148-176 (403)
268 KOG3253 Predicted alpha/beta h 44.3 19 0.00042 31.8 2.5 44 34-77 223-266 (784)
269 cd00307 RuBisCO_small_like Rib 44.1 43 0.00093 21.6 3.6 24 45-68 45-68 (84)
270 PF00919 UPF0004: Uncharacteri 44.0 40 0.00086 22.1 3.5 33 45-82 53-86 (98)
271 cd07399 MPP_YvnB Bacillus subt 43.7 21 0.00045 26.3 2.3 21 48-68 137-157 (214)
272 PRK13322 pantothenate kinase; 43.2 64 0.0014 24.6 5.0 35 31-67 180-214 (246)
273 PRK13325 bifunctional biotin-- 42.8 50 0.0011 28.7 4.7 37 31-67 511-547 (592)
274 cd07402 MPP_GpdQ Enterobacter 42.6 26 0.00055 25.6 2.7 26 48-73 170-195 (240)
275 PRK13331 pantothenate kinase; 42.1 60 0.0013 25.1 4.7 44 32-83 179-222 (251)
276 KOG4667 Predicted esterase [Li 42.1 21 0.00045 27.7 2.1 22 63-84 107-128 (269)
277 PRK11148 cyclic 3',5'-adenosin 40.5 28 0.00061 26.5 2.7 24 49-72 184-207 (275)
278 cd06060 misato Human Misato sh 40.2 61 0.0013 27.6 4.8 59 43-104 133-191 (493)
279 KOG3967 Uncharacterized conser 39.8 53 0.0012 25.6 4.0 41 61-110 190-230 (297)
280 PRK13327 pantothenate kinase; 39.0 80 0.0017 24.1 5.0 35 31-67 174-208 (242)
281 cd02191 FtsZ FtsZ is a GTPase 39.0 67 0.0015 25.3 4.6 46 37-85 64-109 (303)
282 cd06143 PAN2_exo DEDDh 3'-5' e 38.9 25 0.00055 25.8 2.1 29 44-76 88-116 (174)
283 PRK09038 flagellar motor prote 38.9 1.6E+02 0.0035 22.9 6.7 49 50-104 154-217 (281)
284 cd01823 SEST_like SEST_like. A 38.6 84 0.0018 23.2 5.0 28 40-67 126-153 (259)
285 PF13479 AAA_24: AAA domain 38.3 55 0.0012 24.0 3.9 32 37-69 105-136 (213)
286 TIGR03789 pdsO proteobacterial 38.2 52 0.0011 25.3 3.8 52 50-104 156-216 (239)
287 PRK09564 coenzyme A disulfide 38.1 1.2E+02 0.0026 24.4 6.1 55 51-116 140-197 (444)
288 PRK08944 motB flagellar motor 37.9 1.9E+02 0.0041 22.9 7.0 51 49-104 199-264 (302)
289 COG3243 PhaC Poly(3-hydroxyalk 37.9 86 0.0019 26.4 5.2 40 45-84 165-204 (445)
290 PF05582 Peptidase_U57: YabG p 37.8 41 0.00088 26.7 3.2 22 48-69 143-164 (287)
291 PF00070 Pyr_redox: Pyridine n 37.7 93 0.002 18.7 5.0 45 62-117 1-47 (80)
292 PRK15408 autoinducer 2-binding 37.6 1.3E+02 0.0029 23.6 6.2 50 48-107 197-246 (336)
293 PRK13512 coenzyme A disulfide 37.2 1.4E+02 0.0029 24.4 6.3 53 52-115 140-194 (438)
294 PF06961 DUF1294: Protein of u 37.2 29 0.00063 20.6 1.8 16 70-85 33-48 (55)
295 cd03527 RuBisCO_small Ribulose 36.7 63 0.0014 21.5 3.6 23 46-68 61-83 (99)
296 COG4099 Predicted peptidase [G 36.7 60 0.0013 26.5 4.0 31 47-77 252-285 (387)
297 PRK13318 pantothenate kinase; 36.4 93 0.002 23.5 5.0 35 31-67 188-222 (258)
298 TIGR03385 CoA_CoA_reduc CoA-di 36.3 1.4E+02 0.003 24.0 6.2 53 51-114 128-183 (427)
299 KOG1376 Alpha tubulin [Cytoske 35.2 37 0.0008 28.1 2.6 44 34-77 104-147 (407)
300 TIGR00288 conserved hypothetic 35.0 71 0.0015 23.1 3.9 28 94-121 127-154 (160)
301 PRK13326 pantothenate kinase; 35.0 83 0.0018 24.3 4.5 36 31-68 190-225 (262)
302 TIGR00671 baf pantothenate kin 35.0 90 0.002 23.7 4.7 36 31-68 180-215 (243)
303 PF00101 RuBisCO_small: Ribulo 34.7 77 0.0017 21.1 3.7 24 45-68 59-82 (99)
304 PRK09967 putative outer membra 34.5 63 0.0014 23.0 3.6 50 51-104 74-134 (160)
305 PF13692 Glyco_trans_1_4: Glyc 34.4 64 0.0014 20.9 3.4 22 47-68 20-42 (135)
306 cd03859 M14_CPT Peptidase M14- 34.3 52 0.0011 25.6 3.3 29 44-72 7-36 (295)
307 PRK12829 short chain dehydroge 34.3 1.1E+02 0.0023 22.3 4.9 29 55-85 6-34 (264)
308 smart00827 PKS_AT Acyl transfe 33.8 32 0.00068 26.1 2.0 16 64-79 85-100 (298)
309 cd07209 Pat_hypo_Ecoli_Z1214_l 33.7 63 0.0014 23.8 3.6 19 64-82 29-47 (215)
310 PF13174 TPR_6: Tetratricopept 33.0 63 0.0014 15.4 3.5 17 44-60 16-32 (33)
311 KOG1210 Predicted 3-ketosphing 32.9 2.3E+02 0.005 23.0 6.7 77 32-114 136-225 (331)
312 TIGR02855 spore_yabG sporulati 32.7 42 0.00092 26.6 2.5 36 34-69 114-163 (283)
313 cd07410 MPP_CpdB_N Escherichia 32.7 38 0.00082 25.8 2.3 19 52-70 210-228 (277)
314 COG3887 Predicted signaling pr 32.6 1.8E+02 0.004 25.7 6.5 57 23-82 303-365 (655)
315 cd00419 Ferrochelatase_C Ferro 32.0 66 0.0014 22.2 3.2 22 50-71 6-29 (135)
316 PRK13328 pantothenate kinase; 31.8 1E+02 0.0022 23.7 4.5 34 31-67 188-222 (255)
317 cd07425 MPP_Shelphs Shewanella 31.7 51 0.0011 24.3 2.8 39 31-70 132-177 (208)
318 PRK11869 2-oxoacid ferredoxin 31.2 2.1E+02 0.0045 22.5 6.2 22 25-46 8-29 (280)
319 TIGR02625 YiiL_rotase L-rhamno 31.2 69 0.0015 21.3 3.1 37 31-67 7-45 (102)
320 cd01992 PP-ATPase N-terminal d 30.6 1.3E+02 0.0029 20.9 4.8 34 49-83 86-119 (185)
321 PRK13018 cell division protein 30.2 1.3E+02 0.0029 24.7 5.1 39 44-85 99-137 (378)
322 PF04413 Glycos_transf_N: 3-De 30.1 67 0.0015 23.3 3.2 29 45-73 35-63 (186)
323 PRK13324 pantothenate kinase; 30.0 1.2E+02 0.0026 23.4 4.7 35 31-67 188-222 (258)
324 PTZ00122 phosphoglycerate muta 29.9 1.8E+02 0.0038 22.9 5.7 38 43-82 212-252 (299)
325 PRK13321 pantothenate kinase; 29.7 1.4E+02 0.003 22.6 5.0 35 32-68 189-223 (256)
326 PRK13329 pantothenate kinase; 29.7 1.1E+02 0.0025 23.3 4.5 35 31-67 181-215 (249)
327 TIGR02432 lysidine_TilS_N tRNA 29.4 1.3E+02 0.0028 21.2 4.5 34 49-83 89-122 (189)
328 TIGR00128 fabD malonyl CoA-acy 29.2 40 0.00086 25.4 1.9 16 64-79 86-101 (290)
329 cd03858 M14_CP_N-E_like Carbox 29.2 69 0.0015 25.7 3.4 29 44-72 4-33 (374)
330 PF02495 7kD_coat: 7kD viral c 29.1 35 0.00076 20.2 1.3 14 57-70 23-36 (59)
331 TIGR02637 RhaS rhamnose ABC tr 29.0 2.5E+02 0.0053 21.0 6.3 51 47-106 172-222 (302)
332 COG2021 MET2 Homoserine acetyl 28.9 1.3E+02 0.0029 24.7 4.9 32 48-79 133-165 (368)
333 PRK12462 phosphoserine aminotr 28.8 1.7E+02 0.0036 23.8 5.5 47 31-82 40-86 (364)
334 cd07217 Pat17_PNPLA8_PNPLA9_li 28.8 84 0.0018 25.2 3.8 17 64-80 44-60 (344)
335 PRK04148 hypothetical protein; 28.6 1E+02 0.0023 21.5 3.8 34 46-79 3-36 (134)
336 PRK14484 phosphotransferase ma 28.4 98 0.0021 21.3 3.6 21 62-82 3-25 (124)
337 COG4425 Predicted membrane pro 28.3 65 0.0014 27.6 3.0 35 37-72 374-408 (588)
338 COG1360 MotB Flagellar motor p 28.2 88 0.0019 23.8 3.6 52 50-105 153-218 (244)
339 PRK09330 cell division protein 28.1 1.4E+02 0.0031 24.6 5.0 45 37-84 77-121 (384)
340 PF08250 Sperm_act_pep: Sperm- 27.9 16 0.00035 14.4 -0.3 6 67-72 1-6 (10)
341 cd08162 MPP_PhoA_N Synechococc 27.7 46 0.00099 26.3 2.0 17 54-70 226-242 (313)
342 cd07411 MPP_SoxB_N Thermus the 27.6 47 0.001 25.1 2.1 20 52-71 199-218 (264)
343 cd03864 M14_CPN Peptidase M14 27.4 80 0.0017 26.0 3.4 28 44-71 4-32 (392)
344 TIGR03131 malonate_mdcH malona 27.2 47 0.001 25.4 2.0 17 63-79 78-94 (295)
345 COG2272 PnbA Carboxylesterase 26.6 1.3E+02 0.0028 25.8 4.5 15 61-75 180-194 (491)
346 PRK00035 hemH ferrochelatase; 26.4 1.1E+02 0.0024 24.1 4.0 10 60-69 189-198 (333)
347 KOG1283 Serine carboxypeptidas 26.2 2.4E+02 0.0051 23.4 5.8 73 42-118 100-177 (414)
348 PF06500 DUF1100: Alpha/beta h 26.0 1E+02 0.0023 25.6 3.9 36 60-105 260-295 (411)
349 PF01494 FAD_binding_3: FAD bi 25.5 45 0.00097 25.2 1.6 22 61-85 2-23 (356)
350 PRK06142 enoyl-CoA hydratase; 25.2 1.9E+02 0.0041 22.0 5.0 21 63-83 114-134 (272)
351 PF04488 Gly_transf_sug: Glyco 24.9 1.1E+02 0.0024 19.6 3.3 24 47-70 4-27 (103)
352 PF11312 DUF3115: Protein of u 24.9 3.7E+02 0.008 21.7 7.4 22 60-81 87-108 (315)
353 KOG4332 Predicted sugar transp 24.8 82 0.0018 25.7 2.9 28 51-78 113-141 (454)
354 cd01468 trunk_domain trunk dom 24.7 1.6E+02 0.0035 21.9 4.5 69 33-108 81-149 (239)
355 cd07212 Pat_PNPLA9 Patatin-lik 24.7 58 0.0013 25.7 2.1 17 64-80 35-51 (312)
356 PF00698 Acyl_transf_1: Acyl t 24.7 51 0.0011 25.6 1.8 16 63-78 86-101 (318)
357 PHA00447 lysozyme 24.6 1.5E+02 0.0032 20.7 3.9 27 44-72 99-125 (142)
358 PRK06667 motB flagellar motor 24.6 3.2E+02 0.0069 20.8 7.6 51 50-104 147-215 (252)
359 cd00839 MPP_PAPs purple acid p 24.6 83 0.0018 23.7 2.9 27 45-72 179-205 (294)
360 cd07205 Pat_PNPLA6_PNPLA7_NTE1 24.6 1.2E+02 0.0025 21.2 3.5 17 64-80 31-47 (175)
361 TIGR03767 P_acnes_RR metalloph 24.5 69 0.0015 27.4 2.6 27 49-75 369-395 (496)
362 PF02882 THF_DHG_CYH_C: Tetrah 24.3 1.2E+02 0.0026 21.7 3.5 21 58-78 34-56 (160)
363 PF01676 Metalloenzyme: Metall 24.2 1.4E+02 0.003 22.6 4.0 36 32-67 155-192 (252)
364 KOG2248 3'-5' exonuclease [Rep 24.2 46 0.001 27.4 1.5 44 32-82 268-311 (380)
365 cd07400 MPP_YydB Bacillus subt 24.1 87 0.0019 20.8 2.7 19 50-69 104-122 (144)
366 TIGR03729 acc_ester putative p 24.0 73 0.0016 23.6 2.5 21 49-70 199-219 (239)
367 PRK09040 hypothetical protein; 23.9 3.1E+02 0.0067 20.4 7.4 60 39-104 102-178 (214)
368 PRK07260 enoyl-CoA hydratase; 23.7 98 0.0021 23.3 3.2 21 63-83 103-123 (255)
369 PF00378 ECH: Enoyl-CoA hydrat 23.7 2E+02 0.0043 21.3 4.8 39 44-83 76-115 (245)
370 PRK08349 hypothetical protein; 23.7 97 0.0021 22.4 3.0 20 59-78 104-123 (198)
371 PLN03058 dynein light chain ty 23.5 1E+02 0.0022 21.5 2.9 30 45-75 69-100 (128)
372 cd07398 MPP_YbbF-LpxH Escheric 23.2 1.4E+02 0.0031 21.2 3.9 23 48-71 178-200 (217)
373 cd03863 M14_CPD_II The second 23.0 1.1E+02 0.0024 25.0 3.5 29 44-72 9-38 (375)
374 PF07533 BRK: BRK domain; Int 23.0 61 0.0013 18.5 1.4 16 49-64 28-43 (46)
375 PF03850 Tfb4: Transcription f 23.0 2.4E+02 0.0051 22.1 5.2 54 31-84 79-132 (276)
376 KOG4840 Predicted hydrolases o 22.7 97 0.0021 24.3 2.9 12 62-73 108-119 (299)
377 cd06905 Peptidase_M14-like_8 A 22.7 1.2E+02 0.0025 24.8 3.5 28 44-71 7-35 (360)
378 PRK05371 x-prolyl-dipeptidyl a 22.7 64 0.0014 28.9 2.2 21 60-80 337-357 (767)
379 PF05705 DUF829: Eukaryotic pr 22.5 3.1E+02 0.0068 20.0 6.6 44 62-106 68-111 (240)
380 cd00137 PI-PLCc Catalytic doma 22.5 58 0.0013 25.2 1.7 34 32-66 65-98 (274)
381 PF09989 DUF2229: CoA enzyme a 22.5 2E+02 0.0044 21.5 4.6 14 58-71 181-194 (221)
382 TIGR02867 spore_II_P stage II 22.5 1.6E+02 0.0035 21.9 4.0 26 41-66 63-88 (196)
383 COG0777 AccD Acetyl-CoA carbox 22.4 1.5E+02 0.0033 23.6 3.9 59 47-114 184-243 (294)
384 TIGR03768 RPA4764 metallophosp 22.4 72 0.0016 27.2 2.3 24 49-72 388-411 (492)
385 PRK06925 flagellar motor prote 22.3 1.3E+02 0.0028 22.6 3.5 49 51-104 140-203 (230)
386 COG2845 Uncharacterized protei 22.3 1.1E+02 0.0025 24.9 3.3 26 60-85 116-141 (354)
387 PLN02757 sirohydrochlorine fer 22.3 79 0.0017 22.4 2.3 33 38-71 83-115 (154)
388 cd07396 MPP_Nbla03831 Homo sap 22.2 86 0.0019 23.7 2.6 19 50-68 206-224 (267)
389 COG1932 SerC Phosphoserine ami 22.1 2.2E+02 0.0047 23.5 4.9 47 31-82 41-87 (365)
390 cd07014 S49_SppA Signal peptid 22.0 2.9E+02 0.0063 19.4 6.2 71 45-119 25-96 (177)
391 cd06281 PBP1_LacI_like_5 Ligan 22.0 3.2E+02 0.0068 19.8 6.4 52 47-106 163-215 (269)
392 PRK06213 enoyl-CoA hydratase; 22.0 1.4E+02 0.0031 22.0 3.7 21 63-83 96-116 (229)
393 PLN02469 hydroxyacylglutathion 21.9 1.2E+02 0.0026 23.1 3.4 28 46-73 152-179 (258)
394 cd07207 Pat_ExoU_VipD_like Exo 21.9 2.4E+02 0.0053 19.7 4.8 18 63-80 29-46 (194)
395 TIGR00342 thiazole biosynthesi 21.6 1.3E+02 0.0029 24.3 3.7 23 50-73 266-288 (371)
396 cd07206 Pat_TGL3-4-5_SDP1 Tria 21.6 1.3E+02 0.0028 23.9 3.5 17 64-80 100-116 (298)
397 PF03808 Glyco_tran_WecB: Glyc 21.5 3E+02 0.0066 19.4 6.3 13 59-71 47-59 (172)
398 COG4892 Predicted heme/steroid 21.5 97 0.0021 19.7 2.2 35 26-61 35-72 (81)
399 PF08513 LisH: LisH; InterPro 21.5 76 0.0017 15.7 1.5 14 32-45 12-25 (27)
400 PRK13938 phosphoheptose isomer 21.4 3.1E+02 0.0067 20.1 5.3 25 59-83 44-68 (196)
401 PRK14538 putative bifunctional 21.4 3.6E+02 0.0077 24.7 6.6 28 47-76 356-389 (838)
402 cd03868 M14_CPD_I The first ca 21.4 1.2E+02 0.0026 24.5 3.3 29 44-72 4-33 (372)
403 cd01833 XynB_like SGNH_hydrola 21.2 2.1E+02 0.0046 19.0 4.2 28 40-67 59-86 (157)
404 COG0621 MiaB 2-methylthioadeni 21.2 1.2E+02 0.0026 25.5 3.4 23 45-67 57-79 (437)
405 PLN02289 ribulose-bisphosphate 21.2 1.5E+02 0.0033 21.9 3.5 23 46-68 137-159 (176)
406 PRK07511 enoyl-CoA hydratase; 21.1 2.2E+02 0.0049 21.3 4.7 21 63-83 103-123 (260)
407 cd01820 PAF_acetylesterase_lik 21.1 2.1E+02 0.0045 20.6 4.3 28 40-67 108-135 (214)
408 PRK09039 hypothetical protein; 21.1 1.7E+02 0.0037 23.5 4.2 62 38-104 237-317 (343)
409 smart00592 BRK domain in trans 21.1 74 0.0016 18.0 1.5 18 47-64 24-41 (45)
410 PRK11789 N-acetyl-anhydromuran 21.0 1.1E+02 0.0024 22.5 2.9 28 42-69 130-157 (185)
411 cd04506 SGNH_hydrolase_YpmR_li 20.9 2.8E+02 0.0061 19.4 5.0 26 43-68 104-129 (204)
412 PF02558 ApbA: Ketopantoate re 20.9 2E+02 0.0043 19.2 4.0 14 71-84 6-19 (151)
413 cd07406 MPP_CG11883_N Drosophi 20.9 78 0.0017 23.9 2.1 21 53-73 188-208 (257)
414 PLN02752 [acyl-carrier protein 20.8 69 0.0015 25.3 1.8 15 64-78 127-141 (343)
415 cd01825 SGNH_hydrolase_peri1 S 20.8 2.2E+02 0.0047 19.5 4.3 28 41-68 77-104 (189)
416 PF02801 Ketoacyl-synt_C: Beta 20.7 80 0.0017 20.8 1.9 32 48-79 63-102 (119)
417 cd06558 crotonase-like Crotona 20.6 2.5E+02 0.0055 19.6 4.7 21 63-83 98-118 (195)
418 cd01090 Creatinase Creatine am 20.6 92 0.002 23.1 2.4 25 47-71 138-164 (228)
419 cd07378 MPP_ACP5 Homo sapiens 20.6 1.2E+02 0.0027 22.6 3.2 20 49-69 191-210 (277)
420 KOG2281 Dipeptidyl aminopeptid 20.6 2.3E+02 0.0049 25.7 5.0 47 29-76 685-742 (867)
421 KOG2214 Predicted esterase of 20.5 51 0.0011 28.4 1.1 20 64-83 205-224 (543)
422 PF05957 DUF883: Bacterial pro 20.4 1.4E+02 0.0031 19.0 3.0 35 44-83 58-92 (94)
423 PF07997 DUF1694: Protein of u 20.4 87 0.0019 21.4 2.1 22 47-68 50-71 (120)
424 PF10941 DUF2620: Protein of u 20.4 86 0.0019 21.6 2.0 39 60-111 46-85 (117)
425 PF04179 Init_tRNA_PT: Initiat 20.3 2.5E+02 0.0054 23.7 5.1 39 39-77 355-398 (451)
426 cd07409 MPP_CD73_N CD73 ecto-5 20.3 82 0.0018 24.2 2.1 18 52-69 198-215 (281)
427 cd03807 GT1_WbnK_like This fam 20.3 1.5E+02 0.0033 21.7 3.5 26 45-70 209-234 (365)
428 COG0529 CysC Adenylylsulfate k 20.2 1.1E+02 0.0024 22.9 2.7 29 50-79 13-41 (197)
429 TIGR03189 dienoyl_CoA_hyt cycl 20.2 1.1E+02 0.0023 23.2 2.8 20 64-83 95-114 (251)
430 cd01836 FeeA_FeeB_like SGNH_hy 20.0 2.2E+02 0.0048 19.7 4.2 28 41-68 87-114 (191)
No 1
>PLN02847 triacylglycerol lipase
Probab=99.97 E-value=2.5e-31 Score=221.28 Aligned_cols=112 Identities=29% Similarity=0.494 Sum_probs=99.6
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc-------------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF-------------DGGYVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~-------------~~g~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
|+||||.+++| ++||+.+...++ ..|++|+||+++|+++++.+.+.|.+++++||+|+|+|||
T Consensus 182 VsIRGT~Si~D----~LTDL~~~~vPf~~s~l~~gG~~n~~~G~AH~Gml~AArwI~~~i~~~L~kal~~~PdYkLVITG 257 (633)
T PLN02847 182 LLIRGTHSIKD----TLTAATGAVVPFHHSVLHDGGVSNLVLGYAHCGMVAAARWIAKLSTPCLLKALDEYPDFKIKIVG 257 (633)
T ss_pred EEECCCCCHHH----HHHhcccccccCCcccccccCcccCcCCccCccHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEec
Confidence 68999999888 999987655553 1368999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhccccccC
Q 045044 68 HSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEWIING 122 (122)
Q Consensus 68 HSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~i~s 122 (122)
||||||+|+|++++|+.+. . ..+++||+||||+|++.++++.|++||+|
T Consensus 258 HSLGGGVAALLAilLRe~~-~-----fssi~CyAFgPp~cvS~eLAe~~k~fVTS 306 (633)
T PLN02847 258 HSLGGGTAALLTYILREQK-E-----FSSTTCVTFAPAACMTWDLAESGKHFITT 306 (633)
T ss_pred cChHHHHHHHHHHHHhcCC-C-----CCCceEEEecCchhcCHHHHHHhhhheEE
Confidence 9999999999999997542 2 36899999999999999999999999975
No 2
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=99.96 E-value=1.8e-29 Score=174.79 Aligned_cols=109 Identities=24% Similarity=0.456 Sum_probs=93.2
Q ss_pred CEEeCCCCcCcCCceeEeeCCccccccC-----CCchhHhHHHHHH-HHHHHHHHHHHHHHHhCCCCeEEEeeccchHHH
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKFD-----GGYVHNGLLKATR-WVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGV 74 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~~-----~g~vH~Gf~~aa~-~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGav 74 (122)
|+||||.+.+| +++|+.....+.. ++++|+||++++. ..++++.+.|+++.+++|+++|++||||||||+
T Consensus 2 va~RGT~s~~d----~~~d~~~~~~~~~~~~~~~~~vh~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~itGHSLGGal 77 (140)
T PF01764_consen 2 VAFRGTNSPSD----WLTDLDAWPVSWSSFLLDGGRVHSGFLDAAEDSLYDQILDALKELVEKYPDYSIVITGHSLGGAL 77 (140)
T ss_dssp EEEEESSSHHH----HHHHTHHCEEECTTSTTCTHEEEHHHHHHHHCHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHH
T ss_pred EEEECCCCHHH----HHHhcccCceeccccccCceEEehhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhccchHHHH
Confidence 68999997666 8888877665553 6789999999999 999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhcc
Q 045044 75 VALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYE 117 (122)
Q Consensus 75 A~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~ 117 (122)
|.++++++.++.+. +..+++||+||+|+++|.++++.++
T Consensus 78 A~l~a~~l~~~~~~----~~~~~~~~~fg~P~~~~~~~~~~~~ 116 (140)
T PF01764_consen 78 ASLAAADLASHGPS----SSSNVKCYTFGAPRVGNSAFAKWYD 116 (140)
T ss_dssp HHHHHHHHHHCTTT----STTTEEEEEES-S--BEHHHHHHHH
T ss_pred HHHHHHhhhhcccc----cccceeeeecCCccccCHHHHHHHH
Confidence 99999999766422 1478999999999999999999877
No 3
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.96 E-value=1.3e-28 Score=184.19 Aligned_cols=105 Identities=20% Similarity=0.328 Sum_probs=93.6
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc-----CCCchhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHH
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF-----DGGYVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVV 75 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~-----~~g~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA 75 (122)
|+||||.+..| |++|+.....++ .+++||+||++++..+++++.+.++++++++|+++|++||||||||+|
T Consensus 67 va~RGT~~~~d----~~~d~~~~~~~~~~~~~~~~~vh~Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGaiA 142 (229)
T cd00519 67 IAFRGTVSLAD----WLTDLDFSPVPLDPPLCSGGKVHSGFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGALA 142 (229)
T ss_pred EEEeCCCchHH----HHHhcccccccCCCCCCCCcEEcHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHHHH
Confidence 68999998766 999988766554 468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHh
Q 045044 76 ALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVR 115 (122)
Q Consensus 76 ~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~ 115 (122)
+|+++++.... +..+++||+||+||++|.++++.
T Consensus 143 ~l~a~~l~~~~------~~~~i~~~tFg~P~vg~~~~a~~ 176 (229)
T cd00519 143 SLLALDLRLRG------PGSDVTVYTFGQPRVGNAAFAEY 176 (229)
T ss_pred HHHHHHHHhhC------CCCceEEEEeCCCCCCCHHHHHH
Confidence 99999997652 24689999999999999999983
No 4
>PLN02934 triacylglycerol lipase
Probab=99.94 E-value=6e-27 Score=192.65 Aligned_cols=112 Identities=20% Similarity=0.244 Sum_probs=89.8
Q ss_pred CEEeCCC--CcCcCCceeEeeCCccccccC-CCchhHhHHHHHHH-----------------------------------
Q 045044 1 LAIRGLN--LAKEGDYAVLLDNKLGQTKFD-GGYVHNGLLKATRW----------------------------------- 42 (122)
Q Consensus 1 laiRGT~--~~~~~~~~~~~D~~~~~~~~~-~g~vH~Gf~~aa~~----------------------------------- 42 (122)
||||||. +++| |++|+.+...+++ .|+||.||++|+..
T Consensus 225 VAFRGT~p~s~~d----WiTDldfs~~~~p~~gkVH~GF~~A~~l~~~~~~~tf~~~l~~~~~~~~~~~~~~~~~~~~~~ 300 (515)
T PLN02934 225 ISFRGTEPFDADD----WGTDFDYSWYEIPKVGKVHMGFLEAMGLGNRDDTTTFQTSLQTKATSELKEEESKKNLLEMVE 300 (515)
T ss_pred EEECCCCcCCHHH----HhhccCccccCCCCCCeecHHHHHHHhhhccccccchhhhhhhccccccccccccccccccch
Confidence 6899997 3544 9999988777764 58999999999852
Q ss_pred --HHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhccc
Q 045044 43 --VFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEW 118 (122)
Q Consensus 43 --~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~ 118 (122)
.|.++.+.|++++++||+++|+|||||||||+|+|++..|..+.. .+ .....+.|||||+|||||.+||++.+.
T Consensus 301 ~~Ay~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~~L~l~~~-~~-~l~~~~~vYTFGsPRVGN~~FA~~~~~ 376 (515)
T PLN02934 301 RSAYYAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPTVLVLQEE-TE-VMKRLLGVYTFGQPRIGNRQLGKFMEA 376 (515)
T ss_pred hhHHHHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHHHHHHhcc-cc-cccCceEEEEeCCCCccCHHHHHHHHH
Confidence 233578889999999999999999999999999999988764421 11 113468899999999999999986543
No 5
>PLN02162 triacylglycerol lipase
Probab=99.94 E-value=1.1e-26 Score=189.55 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=90.0
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc-CCCchhHhHHHHHHH-----------------HHHHHHHHHHHHHHhCCCCe
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF-DGGYVHNGLLKATRW-----------------VFDAKCEFLRGLVDRNLNYT 62 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~-~~g~vH~Gf~~aa~~-----------------~~~~~~~~l~~~~~~~p~~~ 62 (122)
||||||.+.+. .||++|+.+...+. ..|+||+||++|+.. .+.++.+.|+++++++|+++
T Consensus 202 VAFRGT~~~~~--~DWiTDld~s~~~~~~~GkVH~GF~~A~~~~~~~~~p~~~~~~~~~~ay~~I~~~L~~lL~k~p~~k 279 (475)
T PLN02162 202 VSFRGTEPFEA--ADWCTDLDLSWYELKNVGKVHAGFSRALGLQKDGGWPKENISLLHQYAYYTIRQMLRDKLARNKNLK 279 (475)
T ss_pred EEEccCCCCcH--HHHHhhcCcceecCCCCeeeeHHHHHHHHhhhcccccccccchhhhhhHHHHHHHHHHHHHhCCCce
Confidence 68999986422 24889998877665 468999999999863 34567888899999999999
Q ss_pred EEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhccc
Q 045044 63 LTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEW 118 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~ 118 (122)
|++||||||||+|+|++..+..+... ........|||||+|||||.+||+..+.
T Consensus 280 liVTGHSLGGALAtLaAa~L~~~~~~--~l~~~~~~vYTFGqPRVGn~~FA~~~~~ 333 (475)
T PLN02162 280 YILTGHSLGGALAALFPAILAIHGED--ELLDKLEGIYTFGQPRVGDEDFGEFMKG 333 (475)
T ss_pred EEEEecChHHHHHHHHHHHHHHcccc--ccccccceEEEeCCCCccCHHHHHHHHh
Confidence 99999999999999999888654210 0112356899999999999999987653
No 6
>PLN02408 phospholipase A1
Probab=99.93 E-value=1.9e-26 Score=184.28 Aligned_cols=109 Identities=19% Similarity=0.233 Sum_probs=90.9
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc-------------CCCchhHhHHHHHH-------HHHHHHHHHHHHHHHhCCC
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF-------------DGGYVHNGLLKATR-------WVFDAKCEFLRGLVDRNLN 60 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~-------------~~g~vH~Gf~~aa~-------~~~~~~~~~l~~~~~~~p~ 60 (122)
|+||||.+..| |++|+.+...+. .+++||+||++++. .+.+++.+.|++++++||+
T Consensus 122 VafRGT~s~~d----Wi~DL~~~l~~~p~~~~~~~~~~~~~~~kVH~GFl~~Yts~~~~~~s~r~qVl~eI~~ll~~y~~ 197 (365)
T PLN02408 122 IAFRGTATCLE----WLENLRATLTRLPNAPTDMNGSGDGSGPMVESGFLSLYTSGTAMGPSLQEMVREEIARLLQSYGD 197 (365)
T ss_pred EEEcCCCCHHH----HHHHhhhceeecCCCCccccccCCCCCCeecHhHHHHHhcccccchhHHHHHHHHHHHHHHhcCC
Confidence 68999997766 888887654432 14689999999997 4788899999999999987
Q ss_pred C--eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhccc
Q 045044 61 Y--TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEW 118 (122)
Q Consensus 61 ~--~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~ 118 (122)
+ +|+|||||||||+|+|++.++..+... .+.+++||||+|||||.+|++.+++
T Consensus 198 ~~~sI~vTGHSLGGALAtLaA~dl~~~~~~-----~~~V~v~tFGsPRVGN~~Fa~~~~~ 252 (365)
T PLN02408 198 EPLSLTITGHSLGAALATLTAYDIKTTFKR-----APMVTVISFGGPRVGNRSFRRQLEK 252 (365)
T ss_pred CCceEEEeccchHHHHHHHHHHHHHHhcCC-----CCceEEEEcCCCCcccHHHHHHHHh
Confidence 5 699999999999999999999865311 2368999999999999999998865
No 7
>PLN02454 triacylglycerol lipase
Probab=99.93 E-value=2.7e-26 Score=185.62 Aligned_cols=111 Identities=18% Similarity=0.125 Sum_probs=92.6
Q ss_pred CEEeCCCCcCcCCceeEeeCCccccc-------------------------cCCCchhHhHHHHHH-----------HHH
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTK-------------------------FDGGYVHNGLLKATR-----------WVF 44 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~-------------------------~~~g~vH~Gf~~aa~-----------~~~ 44 (122)
|+||||.+..+ |+.|+.+...+ ..+++||+||++++. .+.
T Consensus 134 VafRGT~t~~e----Wi~Dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kVH~GF~~~Yts~~~~~~f~~~S~r 209 (414)
T PLN02454 134 VAWRGTTRNYE----WVDVLGAKLTSADPLLPGPEQDGVVSGSSSDSDDDDEKGPKVMLGWLTIYTSDDPRSPFTKLSAR 209 (414)
T ss_pred EEECCCCcHHH----HHHhccccccccccccCccccccccccccccccCCCCCCcEEeHhHHHHhhccCccccchhHHHH
Confidence 68999998777 88887764333 236789999999996 788
Q ss_pred HHHHHHHHHHHHhCCCCe--EEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhccc
Q 045044 45 DAKCEFLRGLVDRNLNYT--LTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEW 118 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~--l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~ 118 (122)
+++.+.|++++++||+++ |+|||||||||+|+|++.++..+... .+..+|++|+||+|||||.+|++.+..
T Consensus 210 ~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di~~~g~~---~~~~~V~~~TFGsPRVGN~~Fa~~~~~ 282 (414)
T PLN02454 210 SQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDIVENGVS---GADIPVTAIVFGSPQVGNKEFNDRFKE 282 (414)
T ss_pred HHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHHHHhccc---ccCCceEEEEeCCCcccCHHHHHHHHh
Confidence 899999999999999886 99999999999999999999765310 123469999999999999999998765
No 8
>PLN02310 triacylglycerol lipase
Probab=99.93 E-value=1.9e-26 Score=186.16 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=91.4
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc--CCCchhHhHHHHHHH-----------HHHHHHHHHHHHHHhC----CCCeE
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF--DGGYVHNGLLKATRW-----------VFDAKCEFLRGLVDRN----LNYTL 63 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~--~~g~vH~Gf~~aa~~-----------~~~~~~~~l~~~~~~~----p~~~l 63 (122)
||||||.+..| |++|+.+...+. .+++||+||++++.. +.+++.+.+++++++| ++++|
T Consensus 136 VAfRGT~s~~d----Wi~Dl~~~l~~~~~~~~kVH~GF~~~Y~s~~~~~~~~~~sa~~qVl~eV~~L~~~y~~~~e~~sI 211 (405)
T PLN02310 136 VAWRGTVAPSE----WFLDLETKLEHIDNTNVKVQEGFLKIYKSKDESTRYNKLSASEQVMQEVKRLVNFYRGKGEEVSL 211 (405)
T ss_pred EEECCCCCHHH----HHHhcccceecCCCCCCEeeHhHHHHHhCcCcccccccchHHHHHHHHHHHHHHhhcccCCcceE
Confidence 68999997766 888888766554 467999999999985 6778888889888766 46899
Q ss_pred EEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhcccc
Q 045044 64 TFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEWI 119 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~ 119 (122)
+|||||||||+|+|+++++..+. +..++.+||||+|||||.+|++++++.
T Consensus 212 ~vTGHSLGGALAtLaA~dl~~~~------~~~~v~vyTFGsPRVGN~~Fa~~~~~~ 261 (405)
T PLN02310 212 TVTGHSLGGALALLNAYEAATTI------PDLFVSVISFGAPRVGNIAFKEKLNEL 261 (405)
T ss_pred EEEcccHHHHHHHHHHHHHHHhC------cCcceeEEEecCCCcccHHHHHHHHhc
Confidence 99999999999999999997542 235799999999999999999987653
No 9
>PLN02719 triacylglycerol lipase
Probab=99.93 E-value=6.5e-26 Score=186.64 Aligned_cols=115 Identities=19% Similarity=0.135 Sum_probs=91.5
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc---------CCCchhHhHHHHHH-----------HHHHHHHHHHHHHHHhCCC
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF---------DGGYVHNGLLKATR-----------WVFDAKCEFLRGLVDRNLN 60 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~---------~~g~vH~Gf~~aa~-----------~~~~~~~~~l~~~~~~~p~ 60 (122)
|+||||.+..| |+.|+++...+. .+++||+||++++. .+.+++.+.|++++++||+
T Consensus 217 VAfRGT~t~~e----Wi~DL~~~l~p~~~~~~~c~~~~~kVH~GFls~Yts~~~~s~~~k~SaReQVl~eV~rL~~~Ypd 292 (518)
T PLN02719 217 IAWRGTVTRLE----WIADLKDFLKPVSGNGFRCPDPAVKAESGFLDLYTDKDTCCNFSKFSAREQVLTEVKRLVERYGD 292 (518)
T ss_pred EEEcCCCCchh----hhhhccccceeccccccCCCCCCceeehhHHHHHhcccccccccchhHHHHHHHHHHHHHHHCCc
Confidence 68999997766 888887633332 14689999999997 4788899999999999975
Q ss_pred -----CeEEEeeccchHHHHHHHHHHHHhhcc-ccCCCCCCceEEEEecCCCcCCHHHHHhcccc
Q 045044 61 -----YTLTFARHSLGAGVVALLVLIVVQNLD-KFGNIKRNKIRCFAIAPTKCMSLNLAVRYEWI 119 (122)
Q Consensus 61 -----~~l~vtGHSLGGavA~L~~~~l~~~~~-~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~ 119 (122)
++|+|||||||||+|+|+++++..+.- .....+..+|.+||||+|||||.+|++.++..
T Consensus 293 ~~ge~~sItVTGHSLGGALAtLaA~Dl~~~gln~~~~~~~~pVtvyTFGsPRVGN~~Fa~~~~~~ 357 (518)
T PLN02719 293 EEGEELSITVTGHSLGGALAVLSAYDVAEMGLNRTRKGKVIPVTAFTYGGPRVGNIRFKERIEEL 357 (518)
T ss_pred ccCCcceEEEecCcHHHHHHHHHHHHHHHhcccccccccccceEEEEecCCCccCHHHHHHHHhc
Confidence 699999999999999999999976421 00011234689999999999999999987643
No 10
>PLN00413 triacylglycerol lipase
Probab=99.93 E-value=4.5e-26 Score=186.39 Aligned_cols=112 Identities=16% Similarity=0.295 Sum_probs=89.0
Q ss_pred CEEeCCCC--cCcCCceeEeeCCcccccc-CCCchhHhHHHHHHH---------------------HHHHHHHHHHHHHH
Q 045044 1 LAIRGLNL--AKEGDYAVLLDNKLGQTKF-DGGYVHNGLLKATRW---------------------VFDAKCEFLRGLVD 56 (122)
Q Consensus 1 laiRGT~~--~~~~~~~~~~D~~~~~~~~-~~g~vH~Gf~~aa~~---------------------~~~~~~~~l~~~~~ 56 (122)
||||||.. ++| |++|+.+.+.+. ..|+||.||++|+.. .+.++.+.++++++
T Consensus 204 VAFRGT~p~s~~D----WitDldf~~~~~~~~gkVH~GF~~Al~~~k~~w~~~~~~~~~~~~~~~~ayy~i~~~Lk~ll~ 279 (479)
T PLN00413 204 VSFRGTDPFDADD----WCTDLDLSWHEVKNVGKIHGGFMKALGLPKEGWPEEINLDETQNATSLLAYYTILRHLKEIFD 279 (479)
T ss_pred EEecCCCCCCHHH----HHhhccccccCCCCCceeehhHHHhhcccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 68999984 444 888888766665 568999999999731 45678889999999
Q ss_pred hCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhccc
Q 045044 57 RNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEW 118 (122)
Q Consensus 57 ~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~ 118 (122)
++|+++|+|||||||||+|+|++.++..+.+. ........+||||+|||||.+||+..+.
T Consensus 280 ~~p~~kliVTGHSLGGALAtLaA~~L~~~~~~--~~~~ri~~VYTFG~PRVGN~~FA~~~~~ 339 (479)
T PLN00413 280 QNPTSKFILSGHSLGGALAILFTAVLIMHDEE--EMLERLEGVYTFGQPRVGDEDFGIFMKD 339 (479)
T ss_pred HCCCCeEEEEecCHHHHHHHHHHHHHHhccch--hhccccceEEEeCCCCCccHHHHHHHHh
Confidence 99999999999999999999999888644211 0112345799999999999999987643
No 11
>PLN02802 triacylglycerol lipase
Probab=99.93 E-value=7.2e-26 Score=186.23 Aligned_cols=109 Identities=18% Similarity=0.233 Sum_probs=91.0
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc----------CCCchhHhHHHHHHH-------HHHHHHHHHHHHHHhCCC--C
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF----------DGGYVHNGLLKATRW-------VFDAKCEFLRGLVDRNLN--Y 61 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~----------~~g~vH~Gf~~aa~~-------~~~~~~~~l~~~~~~~p~--~ 61 (122)
|+||||.+..| |+.|+++...++ .+++||+||++++.. +.+++.+.|++++++||+ +
T Consensus 255 VAFRGT~s~~d----Wi~DL~~~lvp~~~~~~~~~~~~~~kVH~GFl~~Yts~~~~~~S~reqVl~eV~~Ll~~Y~~e~~ 330 (509)
T PLN02802 255 IALRGTATCLE----WAENLRAGLVPMPGDDDDAGDQEQPKVECGFLSLYKTAGAHVPSLSESVVGEVRRLMEKYKGEEL 330 (509)
T ss_pred EEEcCCCCHHH----HHHHhccceeecCcccccccCCCcchHHHHHHHHHHhhccccchHHHHHHHHHHHHHHhCCCCcc
Confidence 68999987766 888887755553 247899999999984 667889999999999975 6
Q ss_pred eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhccc
Q 045044 62 TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEW 118 (122)
Q Consensus 62 ~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~ 118 (122)
+|+|||||||||+|+|++.++...... ...|.+||||+|||||.+|+++++.
T Consensus 331 sI~VTGHSLGGALAtLaA~dL~~~~~~-----~~pV~vyTFGsPRVGN~aFA~~~~~ 382 (509)
T PLN02802 331 SITVTGHSLGAALALLVADELATCVPA-----APPVAVFSFGGPRVGNRAFADRLNA 382 (509)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhCCC-----CCceEEEEcCCCCcccHHHHHHHHh
Confidence 899999999999999999999765311 2368999999999999999998753
No 12
>PLN02753 triacylglycerol lipase
Probab=99.93 E-value=9.6e-26 Score=186.09 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=90.9
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc---------CCCchhHhHHHHHH-----------HHHHHHHHHHHHHHHhCC-
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF---------DGGYVHNGLLKATR-----------WVFDAKCEFLRGLVDRNL- 59 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~---------~~g~vH~Gf~~aa~-----------~~~~~~~~~l~~~~~~~p- 59 (122)
|+||||.+..| |+.|+++...+. .+++||+||++++. .+.+++.+.|++++++||
T Consensus 231 VAfRGT~s~~D----Wl~DL~~~l~p~~~~~~~~~~~~~kVH~GFl~lYts~d~~s~~~k~S~reQVl~eVkrLl~~Y~~ 306 (531)
T PLN02753 231 IAWRGTVTKLE----WIADLKDYLKPVSENKIRCPDPAVKVESGFLDLYTDKDTTCKFAKFSAREQILTEVKRLVEEHGD 306 (531)
T ss_pred EEECCCCCHHH----HHHHhhccccccCcccCCCCCCCcchhHhHHHHHhccCcccccchhhHHHHHHHHHHHHHHHccc
Confidence 68999997655 888887644332 24789999999997 578889999999999885
Q ss_pred ----CCeEEEeeccchHHHHHHHHHHHHhhcc-ccCCCCCCceEEEEecCCCcCCHHHHHhccc
Q 045044 60 ----NYTLTFARHSLGAGVVALLVLIVVQNLD-KFGNIKRNKIRCFAIAPTKCMSLNLAVRYEW 118 (122)
Q Consensus 60 ----~~~l~vtGHSLGGavA~L~~~~l~~~~~-~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~ 118 (122)
+++|+|||||||||+|+|++.++..... .....+..+|.+||||+|||||.+|+++++.
T Consensus 307 e~~~~~sItVTGHSLGGALAtLaA~Dla~~g~n~~~~~~~~pV~vyTFGsPRVGN~aFA~~~~~ 370 (531)
T PLN02753 307 DDDSDLSITVTGHSLGGALAILSAYDIAEMGLNRSKKGKVIPVTVLTYGGPRVGNVRFKDRMEE 370 (531)
T ss_pred ccCCCceEEEEccCHHHHHHHHHHHHHHHhcccccccCccCceEEEEeCCCCccCHHHHHHHHh
Confidence 6999999999999999999999976421 0001123468999999999999999998754
No 13
>PLN02324 triacylglycerol lipase
Probab=99.93 E-value=1e-25 Score=182.17 Aligned_cols=114 Identities=23% Similarity=0.178 Sum_probs=91.3
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc----------CCCchhHhHHHHHH-----------HHHHHHHHHHHHHHHhCC
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF----------DGGYVHNGLLKATR-----------WVFDAKCEFLRGLVDRNL 59 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~----------~~g~vH~Gf~~aa~-----------~~~~~~~~~l~~~~~~~p 59 (122)
|+||||.+..| |+.|+.+...+. .+++||+||++.+. .+.+++.+.|++++++||
T Consensus 136 VafRGT~t~~e----Wi~Dl~~~~~~~~~~~p~~~~~~~~kVH~GFl~~Yts~~~~~~f~k~SareqVl~eV~~L~~~Yp 211 (415)
T PLN02324 136 VAWRGTLQPYE----WANDFDFPLESAISVFPVTDPKDNPRIGSGWLDIYTASDSRSPYDTTSAQEQVQGELKRLLELYK 211 (415)
T ss_pred EEEccCCCHHH----HHHHhccccccccccCCCCCCCCCceeehhHHHHhcCcCcccccchhHHHHHHHHHHHHHHHHCC
Confidence 68999997766 888877654431 24689999999987 588889999999999998
Q ss_pred C--CeEEEeeccchHHHHHHHHHHHHhhcc-cc--C-CCCCCceEEEEecCCCcCCHHHHHhccc
Q 045044 60 N--YTLTFARHSLGAGVVALLVLIVVQNLD-KF--G-NIKRNKIRCFAIAPTKCMSLNLAVRYEW 118 (122)
Q Consensus 60 ~--~~l~vtGHSLGGavA~L~~~~l~~~~~-~~--~-~~~~~~v~~~tfg~P~v~~~~~a~~~~~ 118 (122)
+ ++|+|||||||||+|+|+++++..+.. .. + ..+..+|++||||+|||||.+|++.+..
T Consensus 212 ~e~~sItvTGHSLGGALAtLaA~dl~~~~~n~~~~~~~~~~~~V~v~TFGsPRVGN~~Fa~~~~~ 276 (415)
T PLN02324 212 NEEISITFTGHSLGAVMSVLSAADLVYGKKNKINISLQKKQVPITVFAFGSPRIGDHNFKNLVDS 276 (415)
T ss_pred CCCceEEEecCcHHHHHHHHHHHHHHHhcccccccccccCCCceEEEEecCCCcCCHHHHHHHHh
Confidence 5 789999999999999999999975421 00 0 0123569999999999999999998764
No 14
>PLN02571 triacylglycerol lipase
Probab=99.92 E-value=1.7e-25 Score=181.09 Aligned_cols=115 Identities=21% Similarity=0.188 Sum_probs=91.9
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc--------CCCchhHhHHHHHH-----------HHHHHHHHHHHHHHHhCCCC
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF--------DGGYVHNGLLKATR-----------WVFDAKCEFLRGLVDRNLNY 61 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~--------~~g~vH~Gf~~aa~-----------~~~~~~~~~l~~~~~~~p~~ 61 (122)
||||||.+..| |+.|+.+...+. ..++||+||++++. .+.+++.+.|++++++||++
T Consensus 149 VAfRGT~t~~e----Wi~Dl~~~lv~~~~~~g~~~~~~kVH~GF~~~Yts~~~~~~~~k~Sar~qvl~eV~~L~~~y~~e 224 (413)
T PLN02571 149 IAWRGTVQTLE----WVNDFEFNLVSASKIFGESNDQPKVHQGWYSIYTSDDERSPFNKTSARDQVLNEVGRLVEKYKDE 224 (413)
T ss_pred EEEcCCCCHHH----HHHhcccceeccccccCCCCCCceeeehHHHhhhccccccccchhhHHHHHHHHHHHHHHhcCcc
Confidence 68999987666 888887765553 13799999999996 67888999999999999875
Q ss_pred --eEEEeeccchHHHHHHHHHHHHhhcccc---CCCCCCceEEEEecCCCcCCHHHHHhcccc
Q 045044 62 --TLTFARHSLGAGVVALLVLIVVQNLDKF---GNIKRNKIRCFAIAPTKCMSLNLAVRYEWI 119 (122)
Q Consensus 62 --~l~vtGHSLGGavA~L~~~~l~~~~~~~---~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~ 119 (122)
+|+|||||||||+|+|+++++..+.-.. ...+..+|.+|+||+|||||.+|++.+.+.
T Consensus 225 ~~sI~VTGHSLGGALAtLaA~dl~~~g~n~~~~~~~~~~~V~v~TFGsPRVGN~~Fa~~~~~~ 287 (413)
T PLN02571 225 EISITICGHSLGAALATLNAVDIVANGFNRSKSRPNKSCPVTAFVFASPRVGDSDFKKLFSGL 287 (413)
T ss_pred cccEEEeccchHHHHHHHHHHHHHHhcccccccccccCcceEEEEeCCCCccCHHHHHHHhcc
Confidence 7999999999999999999997542100 001124689999999999999999977543
No 15
>PLN02761 lipase class 3 family protein
Probab=99.92 E-value=1.8e-25 Score=184.34 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=92.5
Q ss_pred CEEeCCCCcCcCCceeEeeCCccccc--c---CCCchhHhHHHHHH-----------HHHHHHHHHHHHHHHhC------
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTK--F---DGGYVHNGLLKATR-----------WVFDAKCEFLRGLVDRN------ 58 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~--~---~~g~vH~Gf~~aa~-----------~~~~~~~~~l~~~~~~~------ 58 (122)
|+||||.+..| |+.|+++...+ + .+++||+||++++. .+.+++.+.|++++++|
T Consensus 216 VAfRGT~t~~E----Wi~DL~~~lvpa~~~~~~~~kVH~GFls~Yts~~~~~~~~k~SaR~qVl~eV~rL~~~Y~~~~k~ 291 (527)
T PLN02761 216 IAWRGTVTYLE----WIYDLKDILCSANFGDDPSIKIELGFHDLYTKKEDSCKFSSFSAREQVLAEVKRLVEYYGTEEEG 291 (527)
T ss_pred EEEcCCCcHHH----HHHhccccccccCCCCCCchhHHHHHHHHhhccCccccccchhHHHHHHHHHHHHHHhcccccCC
Confidence 68999987666 88888765443 2 46799999999997 67888999999999988
Q ss_pred CCCeEEEeeccchHHHHHHHHHHHHhhccc-c-CCCCCCceEEEEecCCCcCCHHHHHhcccc
Q 045044 59 LNYTLTFARHSLGAGVVALLVLIVVQNLDK-F-GNIKRNKIRCFAIAPTKCMSLNLAVRYEWI 119 (122)
Q Consensus 59 p~~~l~vtGHSLGGavA~L~~~~l~~~~~~-~-~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~ 119 (122)
++++|+|||||||||+|+|+++++...... . ...+..+|++|+||+|||||.+|++++.+.
T Consensus 292 e~~sItVTGHSLGGALAtLaA~DIa~~gln~~~~~~~~~PVtv~TFGsPRVGN~~FA~~~d~l 354 (527)
T PLN02761 292 HEISITVTGHSLGASLALVSAYDIAELNLNHVPENNYKIPITVFSFSGPRVGNLRFKERCDEL 354 (527)
T ss_pred CCceEEEeccchHHHHHHHHHHHHHHhccccccccccCCceEEEEcCCCCcCCHHHHHHHHhc
Confidence 468999999999999999999999754210 0 012234699999999999999999988654
No 16
>PLN03037 lipase class 3 family protein; Provisional
Probab=99.92 E-value=2e-25 Score=184.02 Aligned_cols=110 Identities=19% Similarity=0.247 Sum_probs=89.4
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc--------CCCchhHhHHHHHHH-----------HHHHHHHHHHHHHHhCC--
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF--------DGGYVHNGLLKATRW-----------VFDAKCEFLRGLVDRNL-- 59 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~--------~~g~vH~Gf~~aa~~-----------~~~~~~~~l~~~~~~~p-- 59 (122)
||||||.+..| |+.|+.+.+.++ .+++||+||++++.. ..+++.+.|++++++|+
T Consensus 239 VAfRGT~s~~E----Wl~DL~~~lvp~~~~~~~~~~~~kVH~GFlslYtS~~~~s~fnk~SareQVl~eV~rLv~~Yk~~ 314 (525)
T PLN03037 239 VAWRGTVAPTE----WFMDLRTSLEPFDCDGDHGKNVVKVQSGFLSIYKSKSELTRYNKLSASEQVMEEVKRLVNFFKDR 314 (525)
T ss_pred EEECCCCCHHH----HHHhhhccccccccccCCCCCCceeeHhHHHHHhCcccccccccchhHHHHHHHHHHHHHhcccc
Confidence 68999987665 888887655554 246899999999974 34667888888888775
Q ss_pred --CCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhcccc
Q 045044 60 --NYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEWI 119 (122)
Q Consensus 60 --~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~ 119 (122)
+++|+|||||||||+|+|+++++..+.+.. .++.+||||+|||||.+|++.++..
T Consensus 315 ge~~SItVTGHSLGGALAtLaA~DIa~~~p~~-----~~VtvyTFGsPRVGN~aFA~~~~~l 371 (525)
T PLN03037 315 GEEVSLTITGHSLGGALALLNAYEAARSVPAL-----SNISVISFGAPRVGNLAFKEKLNEL 371 (525)
T ss_pred CCcceEEEeccCHHHHHHHHHHHHHHHhCCCC-----CCeeEEEecCCCccCHHHHHHHHhc
Confidence 689999999999999999999998653221 3799999999999999999987654
No 17
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=99.89 E-value=8e-24 Score=167.97 Aligned_cols=111 Identities=24% Similarity=0.315 Sum_probs=93.5
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccc----cc-CCCchhHhHHHHHHHHHH-HHHHHHHHHHHhCCCCeEEEeeccchHHH
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQT----KF-DGGYVHNGLLKATRWVFD-AKCEFLRGLVDRNLNYTLTFARHSLGAGV 74 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~----~~-~~g~vH~Gf~~aa~~~~~-~~~~~l~~~~~~~p~~~l~vtGHSLGGav 74 (122)
+|+|||....+ |+.|...... .+ .+|+|++||++++..+++ .+.+.+++++++||+|+|++||||||||+
T Consensus 109 vafRGt~~~~q----~~~e~~~~~~~~~~~~~~~g~v~~~f~~~~~~~~~~~~~~~~~~L~~~~~~~~i~vTGHSLGgAl 184 (336)
T KOG4569|consen 109 VAFRGTNTPLQ----WIAEFDKSLFPSKPFFPDGGKVEAYFLDAYTSLWNSGLDAELRRLIELYPNYSIWVTGHSLGGAL 184 (336)
T ss_pred EEEccCCChHH----HHHHHHhhhccccccccCCceEEEeccchhccccHHHHHHHHHHHHHhcCCcEEEEecCChHHHH
Confidence 58999987655 6555544322 23 588999999999999995 68999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhcccc
Q 045044 75 VALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEWI 119 (122)
Q Consensus 75 A~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~ 119 (122)
|+|++..+..+... ...++++||||+||+||.+|++.+.+.
T Consensus 185 A~laa~~i~~~~~~----~~~~v~v~tFG~PRvGn~~fa~~~d~~ 225 (336)
T KOG4569|consen 185 ASLAALDLVKNGLK----TSSPVKVYTFGQPRVGNLAFAEWHDEL 225 (336)
T ss_pred HHHHHHHHHHcCCC----CCCceEEEEecCCCcccHHHHHHHHhh
Confidence 99999999877422 246999999999999999999987654
No 18
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.79 E-value=5.5e-19 Score=124.85 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=67.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLA 113 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a 113 (122)
+||+++++.+++++.+.+++.+.++|+++|++|||||||++|.|++.++.... +...++|++||+|++++.+++
T Consensus 1 ~Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~------~~~~~~~~~fg~p~~~~~~~~ 74 (153)
T cd00741 1 KGFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRG------LGRLVRVYTFGPPRVGNAAFA 74 (153)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhcc------CCCceEEEEeCCCcccchHHH
Confidence 59999999999999999999999999999999999999999999999986542 246899999999999999986
No 19
>KOG2088 consensus Predicted lipase/calmodulin-binding heat-shock protein [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-15 Score=128.56 Aligned_cols=122 Identities=43% Similarity=0.616 Sum_probs=109.5
Q ss_pred CEEeC-CCCcCcCCceeE-------eeCCccccccCCCchhHhHHHHHHHHHHHHHHHHH-HHHHhCCCCeEEEeeccch
Q 045044 1 LAIRG-LNLAKEGDYAVL-------LDNKLGQTKFDGGYVHNGLLKATRWVFDAKCEFLR-GLVDRNLNYTLTFARHSLG 71 (122)
Q Consensus 1 laiRG-T~~~~~~~~~~~-------~D~~~~~~~~~~g~vH~Gf~~aa~~~~~~~~~~l~-~~~~~~p~~~l~vtGHSLG 71 (122)
+++|| +.++.+++.|+. .|.+.+...|.++++|.|+.+++.|+.++-...++ +....+|+|+++++|||+|
T Consensus 183 ~~ir~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~f~~~~~h~g~~~~a~~~~~~~~~~~~~r~~~~~p~~~~~~~ghslg 262 (596)
T KOG2088|consen 183 LAIRGALNSAYESDTDVTEAVAHASVLNDFGERKFDGGYVHNGLLKAAAWILAEETATLRSRLWRLYPSYKLTGVGHSLG 262 (596)
T ss_pred HHHHhhhcchhhhccccccchhhhhhhccchhhccccccccCcccchHHHHhhccchhhhhhhhhhcCCCceeEEecccc
Confidence 36899 888999888888 77778888899999999999999999999888888 8889999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhccccccC
Q 045044 72 AGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEWIING 122 (122)
Q Consensus 72 GavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~i~s 122 (122)
|.++++++.++..++..+.........|++|++||+...+.+|.+.++|++
T Consensus 263 ~~~~~l~~~~~l~~~~~l~~~~~~~~~~f~~a~~rc~~~~~~Et~~~vi~d 313 (596)
T KOG2088|consen 263 GLSASLLANCVLRNPAELLLIDKARNFCFVLAPPRCFSLRVAETPFDVITD 313 (596)
T ss_pred cchhhhhhHHHhcCHHHHhhccccceEEEEeccccccchhhccCHHHHHHh
Confidence 999999998887776666666677899999999999999999999998864
No 20
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=99.04 E-value=2.4e-10 Score=86.51 Aligned_cols=86 Identities=9% Similarity=0.105 Sum_probs=56.7
Q ss_pred CEEeCCCCcCcCCceeEeeCCccccccCCCchhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKFDGGYVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~~~g~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
||||||.. +..||-.|....... .+.. + ..-.+.++++++++++ +|++|||||||.+|..+++
T Consensus 41 vaFRGTd~---t~~~W~ed~~~~~~~----~~~~--q-------~~A~~yl~~~~~~~~~-~i~v~GHSkGGnLA~yaa~ 103 (224)
T PF11187_consen 41 VAFRGTDD---TLVDWKEDFNMSFQD----ETPQ--Q-------KSALAYLKKIAKKYPG-KIYVTGHSKGGNLAQYAAA 103 (224)
T ss_pred EEEECCCC---chhhHHHHHHhhcCC----CCHH--H-------HHHHHHHHHHHHhCCC-CEEEEEechhhHHHHHHHH
Confidence 68999952 333466666432211 1111 1 2234567777777887 4999999999999999998
Q ss_pred HHHhhccccCCCCCCceEEEEecCCCcCC
Q 045044 81 IVVQNLDKFGNIKRNKIRCFAIAPTKCMS 109 (122)
Q Consensus 81 ~l~~~~~~~~~~~~~~v~~~tfg~P~v~~ 109 (122)
.+.... ..+-.+||+|-.|....
T Consensus 104 ~~~~~~------~~rI~~vy~fDgPGf~~ 126 (224)
T PF11187_consen 104 NCDDEI------QDRISKVYSFDGPGFSE 126 (224)
T ss_pred HccHHH------hhheeEEEEeeCCCCCh
Confidence 864431 12467899999998764
No 21
>COG3675 Predicted lipase [Lipid metabolism]
Probab=98.82 E-value=1.3e-09 Score=85.19 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=67.5
Q ss_pred CCCchhHhHHHHHHHHHHHHHH-HHHHHHHhCCC-CeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCC
Q 045044 28 DGGYVHNGLLKATRWVFDAKCE-FLRGLVDRNLN-YTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPT 105 (122)
Q Consensus 28 ~~g~vH~Gf~~aa~~~~~~~~~-~l~~~~~~~p~-~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P 105 (122)
++...|+++.++-..+-..+.+ ..+.++++.|. |++.+||||.|||++.+.+..+-.. .|+.+-.++||++|
T Consensus 140 dn~gm~~~~sr~~dtlgmtv~~~q~~~lleeiP~~Yrig~tghS~g~aii~vrGtyfe~k------~p~vdnlv~tf~~P 213 (332)
T COG3675 140 DNEGMHRQPSRNQDTLGMTVIEKQEQTLLEEIPQGYRIGITGHSSGGAIICVRGTYFERK------YPRVDNLVVTFGQP 213 (332)
T ss_pred cccccccchhhhhhhcCchHHHHHHHHHHHhcccceEEEEEeecCCccEEEEeccchhcc------cCCcccceeeccCC
Confidence 3555888998888877777654 67778899998 9999999999999999988754322 23445566799999
Q ss_pred CcCCHHHHHh-ccccc
Q 045044 106 KCMSLNLAVR-YEWII 120 (122)
Q Consensus 106 ~v~~~~~a~~-~~~~i 120 (122)
.+.|.++.++ .+.|+
T Consensus 214 ~itd~r~~QyVh~gF~ 229 (332)
T COG3675 214 AITDWRFPQYVHEGFA 229 (332)
T ss_pred ccccchhHHHHHhHHH
Confidence 9999999987 44444
No 22
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=98.77 E-value=1e-08 Score=80.70 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
..+.+...++.||+.+||+||||||||+|+|+++-+
T Consensus 262 ~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T COG5153 262 ALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred HHHHHHHHHHhCCCceEEEeccccchHHHHHhcccc
Confidence 334555556679999999999999999999998654
No 23
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=98.77 E-value=1e-08 Score=80.70 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
..+.+...++.||+.+||+||||||||+|+|+++-+
T Consensus 262 ~ldI~~~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T KOG4540|consen 262 ALDILGAVRRIYPDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred HHHHHHHHHHhCCCceEEEeccccchHHHHHhcccc
Confidence 334555556679999999999999999999998654
No 24
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.06 E-value=1.4e-05 Score=59.74 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=52.0
Q ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccC-CCC-CCceEEEEecCCC
Q 045044 29 GGYVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFG-NIK-RNKIRCFAIAPTK 106 (122)
Q Consensus 29 ~g~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~-~~~-~~~v~~~tfg~P~ 106 (122)
..+-+.|+-..++.+.+++.+.++..-.+ ..+|.++||||||-++--+-..+..+....+ .+. -....-++||.|-
T Consensus 48 ~~~T~~gI~~~g~rL~~eI~~~~~~~~~~--~~~IsfIgHSLGGli~r~al~~~~~~~~~~~~~~~~~~~~~fitlatPH 125 (217)
T PF05057_consen 48 EFKTFDGIDVCGERLAEEILEHIKDYESK--IRKISFIGHSLGGLIARYALGLLHDKPQYFPGFFQKIKPHNFITLATPH 125 (217)
T ss_pred ccccchhhHHHHHHHHHHHHHhccccccc--cccceEEEecccHHHHHHHHHHhhhccccccccccceeeeeEEEeCCCC
Confidence 34578888888887777776665554322 3689999999999999866655554421111 010 1233446779999
Q ss_pred cCCH
Q 045044 107 CMSL 110 (122)
Q Consensus 107 v~~~ 110 (122)
.|..
T Consensus 126 ~G~~ 129 (217)
T PF05057_consen 126 LGSR 129 (217)
T ss_pred CCCc
Confidence 9854
No 25
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.97 E-value=1.9e-05 Score=59.61 Aligned_cols=56 Identities=11% Similarity=0.061 Sum_probs=37.9
Q ss_pred HHHHHHHHHhC-----CCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCH
Q 045044 48 CEFLRGLVDRN-----LNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSL 110 (122)
Q Consensus 48 ~~~l~~~~~~~-----p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~ 110 (122)
.+.++.+++.+ +.-+|+++||||||=+|..+..+. ... +..--.++++|+|-.+++
T Consensus 67 ~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~-~~~------~~~v~~iitl~tPh~g~~ 127 (225)
T PF07819_consen 67 AEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLP-NYD------PDSVKTIITLGTPHRGSP 127 (225)
T ss_pred HHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhcc-ccc------cccEEEEEEEcCCCCCcc
Confidence 34444444444 778999999999998887654332 211 124567899999988765
No 26
>COG3675 Predicted lipase [Lipid metabolism]
Probab=97.81 E-value=1.5e-05 Score=62.73 Aligned_cols=68 Identities=24% Similarity=0.168 Sum_probs=49.5
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCH
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSL 110 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~ 110 (122)
+||+||..-+..+ ...|+.-+...+.+.+.+ ||+|++-|.+. ..+ .+ .+.-+++|++ |+++..
T Consensus 223 yVh~gF~~~t~ri----~S~l~~ei~~~k~pf~yc--Hsgg~~~avl~-~~y-hn-------~p~~lrLy~y--prVGl~ 285 (332)
T COG3675 223 YVHEGFAHKTYRI----CSDLDIEIFMPKVPFLYC--HSGGLLWAVLG-RIY-HN-------TPTWLRLYRY--PRVGLI 285 (332)
T ss_pred HHHhHHHHHHHHH----hccchHhhcCcCCceEEE--ecCCccccccc-ccc-cC-------Cchhheeecc--cccccc
Confidence 4899999866543 445555566678888888 99999888665 111 11 1467889999 999999
Q ss_pred HHHHh
Q 045044 111 NLAVR 115 (122)
Q Consensus 111 ~~a~~ 115 (122)
.+||.
T Consensus 286 ~fae~ 290 (332)
T COG3675 286 RFAEY 290 (332)
T ss_pred chHHH
Confidence 99985
No 27
>KOG2088 consensus Predicted lipase/calmodulin-binding heat-shock protein [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.61 E-value=1.1e-05 Score=68.74 Aligned_cols=102 Identities=23% Similarity=0.220 Sum_probs=69.8
Q ss_pred CEEeCCCCcCcCCceeEeeCCcccccc------CCCchhHhHHHHHHHHHHHH--HHHHHHHHHhCCCCeEEEeeccchH
Q 045044 1 LAIRGLNLAKEGDYAVLLDNKLGQTKF------DGGYVHNGLLKATRWVFDAK--CEFLRGLVDRNLNYTLTFARHSLGA 72 (122)
Q Consensus 1 laiRGT~~~~~~~~~~~~D~~~~~~~~------~~g~vH~Gf~~aa~~~~~~~--~~~l~~~~~~~p~~~l~vtGHSLGG 72 (122)
|++|||.++.| .++|+.+..+.. +...-|+ ++++..++.. .+.|......+|.+.. +.||||||
T Consensus 321 ~~~r~~~sl~d----~l~~v~~e~~~l~~~~~~d~~~~~~---~~~~~~r~~~~~~~~l~~i~~~~~~~~~-~~~~~l~g 392 (596)
T KOG2088|consen 321 LPVRGATSLDD----LLTDVLLEPELLGLSCIRDDALPER---QAAVDPRSTLAEGSRLLSIVSRKPCRQG-IFGHVLGG 392 (596)
T ss_pred eeeccccchhh----hhhhhhcCccccccccchhhhhccc---ccccchhhhhCccchhhHHHhhCccccc-cccccccC
Confidence 46899998887 888887654322 1111222 3444444443 2356667777898888 99999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc-CCHHHHHhccccccC
Q 045044 73 GVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC-MSLNLAVRYEWIING 122 (122)
Q Consensus 73 avA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v-~~~~~a~~~~~~i~s 122 (122)
+ ++++++.. ...+.|+.|++|.+ .+..-++++..|++|
T Consensus 393 ~----l~v~lr~~--------~~~l~~~a~s~~~~~~s~~~~e~~~~~~~s 431 (596)
T KOG2088|consen 393 G----LGVDLRRE--------HPVLSCYAYSPPGGLWSERGAERGESFVTS 431 (596)
T ss_pred c----cccccccC--------CCceeeeecCCCcceecchhHHHHHHHHHh
Confidence 9 45566544 46899999996666 588888888888775
No 28
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=97.42 E-value=0.00028 Score=55.72 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH-------------------hCC-CCeEEEeeccchHHHHHHHHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVD-------------------RNL-NYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~-------------------~~p-~~~l~vtGHSLGGavA~L~~~~l 82 (122)
.|....+..+.+++...++.+.+ ++| +-.+++.||||||.++...+..+
T Consensus 95 ~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~ 163 (332)
T TIGR01607 95 RGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELL 163 (332)
T ss_pred ccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHh
Confidence 34445666666667666666554 466 67899999999999998765444
No 29
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=97.39 E-value=0.0003 Score=55.18 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=39.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 33 HNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 33 H~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
.+|-.+.+....+.+...++...+.+|+-.+.+.||||||.||.......
T Consensus 79 ~rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~ 128 (298)
T COG2267 79 QRGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARY 128 (298)
T ss_pred CcCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhC
Confidence 45556667777777777777777778999999999999999998765433
No 30
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=97.38 E-value=0.00058 Score=56.55 Aligned_cols=63 Identities=17% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHH
Q 045044 44 FDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNL 112 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~ 112 (122)
++.+.+.++++.+++++-++.++||||||.+|..+... +.+.. ...--+.++.|+|--|+...
T Consensus 145 ~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~---~p~~~---~k~I~~~I~la~P~~Gs~~~ 207 (440)
T PLN02733 145 MDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSL---HSDVF---EKYVNSWIAIAAPFQGAPGF 207 (440)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHH---CCHhH---HhHhccEEEECCCCCCCchh
Confidence 45566777777777888899999999999988754422 21111 01234678889988887644
No 31
>PRK10985 putative hydrolase; Provisional
Probab=97.35 E-value=0.00065 Score=53.15 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcC
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCM 108 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~ 108 (122)
+++...++.+.++++..+++++||||||.++...+.. +.++ ..-..+++.++|-.+
T Consensus 115 ~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~---~~~~-----~~~~~~v~i~~p~~~ 170 (324)
T PRK10985 115 EDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAK---EGDD-----LPLDAAVIVSAPLML 170 (324)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHh---hCCC-----CCccEEEEEcCCCCH
Confidence 4455555566666787889999999999976544432 2111 123467888887543
No 32
>PHA02857 monoglyceride lipase; Provisional
Probab=97.32 E-value=0.00058 Score=51.37 Aligned_cols=38 Identities=13% Similarity=0.148 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 43 VFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
..+++.+.+..+.+.+++-++.+.||||||.+|..++.
T Consensus 79 ~~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~ 116 (276)
T PHA02857 79 YVRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAY 116 (276)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHH
Confidence 34556666665555567778999999999999987664
No 33
>PRK10749 lysophospholipase L2; Provisional
Probab=97.31 E-value=0.00051 Score=53.81 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
..+....+++...++.+...++.-++.++||||||.+|..++.
T Consensus 108 ~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~ 150 (330)
T PRK10749 108 ERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQ 150 (330)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHH
Confidence 3444455556666666555556678999999999999976553
No 34
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.28 E-value=0.00096 Score=48.72 Aligned_cols=68 Identities=12% Similarity=-0.003 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH--HHhhccccCCCCCCceEEEEecCCCcC
Q 045044 35 GLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI--VVQNLDKFGNIKRNKIRCFAIAPTKCM 108 (122)
Q Consensus 35 Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~--l~~~~~~~~~~~~~~v~~~tfg~P~v~ 108 (122)
.+.++...-.+++...|++...+.|+.+|+++|+|.||.++.-+.-. +.... .....-++.||.|.-.
T Consensus 55 ~y~~S~~~G~~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~------~~~I~avvlfGdP~~~ 124 (179)
T PF01083_consen 55 SYGDSVAAGVANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDV------ADRIAAVVLFGDPRRG 124 (179)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHH------HHHEEEEEEES-TTTB
T ss_pred cccccHHHHHHHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhh------hhhEEEEEEecCCccc
Confidence 34556666666678888888889999999999999999988765444 11110 0123556899998764
No 35
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=97.24 E-value=0.00066 Score=49.73 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
++..+.+.+++++...-++++.||||||.+|..++...
T Consensus 50 ~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~ 87 (242)
T PRK11126 50 ADVSRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQG 87 (242)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhC
Confidence 44455566666665667899999999999998877643
No 36
>PLN02965 Probable pheophorbidase
Probab=97.24 E-value=0.0006 Score=51.04 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhCCC-CeEEEeeccchHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLN-YTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~-~~l~vtGHSLGGavA~L~~~ 80 (122)
+...+.+.+++++.+. -+++++||||||.+|..++.
T Consensus 55 ~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~ 91 (255)
T PLN02965 55 DQYNRPLFALLSDLPPDHKVILVGHSIGGGSVTEALC 91 (255)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHH
Confidence 3445556666666554 48999999999999987765
No 37
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=97.21 E-value=0.0014 Score=45.88 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
..+.+.+++++...-+++++|||+||.+|..++
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a 84 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALRLA 84 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHH
T ss_pred hhhhhhhcccccccccccccccccccccccccc
Confidence 344555555555556899999999999997665
No 38
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=97.18 E-value=0.00083 Score=47.99 Aligned_cols=35 Identities=20% Similarity=0.060 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
..+.+.++++....-++.+.|||+||.+|..++..
T Consensus 65 ~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 65 LADDVLALLDHLGIERAVFCGLSLGGLIAQGLAAR 99 (251)
T ss_pred HHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHH
Confidence 33344455554444579999999999999876643
No 39
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.18 E-value=0.00039 Score=54.94 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHH
Q 045044 40 TRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALL 78 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~ 78 (122)
+..+.+++...++++..+.| -.|+++|||||||||.=.
T Consensus 126 ~eT~~KD~~~~i~~~fge~~-~~iilVGHSmGGaIav~~ 163 (343)
T KOG2564|consen 126 LETMSKDFGAVIKELFGELP-PQIILVGHSMGGAIAVHT 163 (343)
T ss_pred HHHHHHHHHHHHHHHhccCC-CceEEEeccccchhhhhh
Confidence 34445556666666653322 469999999999999543
No 40
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=97.17 E-value=0.00072 Score=51.49 Aligned_cols=36 Identities=14% Similarity=-0.026 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
+..+.+..++++....++.++||||||.+|..++..
T Consensus 87 ~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~ 122 (294)
T PLN02824 87 TWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVD 122 (294)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHh
Confidence 344555555555555789999999999999877643
No 41
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.16 E-value=0.00096 Score=51.62 Aligned_cols=38 Identities=29% Similarity=0.240 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHh--CCCCeEEEeeccchHHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDR--NLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 45 ~~~~~~l~~~~~~--~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++...|+.+.++ .+.-++.++||||||.+|..++..+
T Consensus 94 ~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~ 133 (275)
T cd00707 94 AELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRL 133 (275)
T ss_pred HHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHh
Confidence 4455666666554 3446899999999999999988655
No 42
>PRK10673 acyl-CoA esterase; Provisional
Probab=97.13 E-value=0.00096 Score=49.14 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
..+.+.+++++....+++++|||+||.+|..++..
T Consensus 67 ~~~d~~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~ 101 (255)
T PRK10673 67 MAQDLLDTLDALQIEKATFIGHSMGGKAVMALTAL 101 (255)
T ss_pred HHHHHHHHHHHcCCCceEEEEECHHHHHHHHHHHh
Confidence 44455555555555679999999999999877643
No 43
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=97.11 E-value=0.0012 Score=46.99 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 51 LRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 51 l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
+..+++..+.-++.+.|||+||.+|..++..
T Consensus 60 ~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~ 90 (251)
T TIGR03695 60 LATLLDQLGIEPFFLVGYSMGGRIALYYALQ 90 (251)
T ss_pred HHHHHHHcCCCeEEEEEeccHHHHHHHHHHh
Confidence 4444455555689999999999999877654
No 44
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=97.11 E-value=0.00096 Score=47.69 Aligned_cols=37 Identities=16% Similarity=0.083 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
+.+.+.+..++++.+.-++.++|||+||.++..++..
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~ 64 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQ 64 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHH
Confidence 3355566666666676779999999999998766533
No 45
>PRK11071 esterase YqiA; Provisional
Probab=97.08 E-value=0.0011 Score=48.49 Aligned_cols=36 Identities=25% Similarity=0.194 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
+..+.+.++++++..-++.++||||||.+|..++..
T Consensus 46 ~~~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~ 81 (190)
T PRK11071 46 DAAELLESLVLEHGGDPLGLVGSSLGGYYATWLSQC 81 (190)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHH
Confidence 345566677776666789999999999999877643
No 46
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.06 E-value=0.0013 Score=51.03 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHh--CCCCeEEEeeccchHHHHHHHHH
Q 045044 41 RWVFDAKCEFLRGLVDR--NLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 41 ~~~~~~~~~~l~~~~~~--~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
....+++...++.+..+ +++.++++.||||||++|..++.
T Consensus 112 ~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~ 153 (330)
T PLN02298 112 DLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHL 153 (330)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHh
Confidence 33445555566655432 34567999999999999976653
No 47
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=97.03 E-value=0.0012 Score=49.89 Aligned_cols=37 Identities=8% Similarity=-0.038 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
+.+.+.+.++++...--++.++||||||.+|..++..
T Consensus 75 ~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~ 111 (276)
T TIGR02240 75 PGLAKLAARMLDYLDYGQVNAIGVSWGGALAQQFAHD 111 (276)
T ss_pred HHHHHHHHHHHHHhCcCceEEEEECHHHHHHHHHHHH
Confidence 3344455555554444579999999999999887754
No 48
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=97.01 E-value=0.00097 Score=54.24 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 40 TRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
..+..+++...++.+..++|+.++++.||||||.+|..++
T Consensus 187 ~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a 226 (395)
T PLN02652 187 LDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAA 226 (395)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHH
Confidence 3444556667777777777888999999999999987543
No 49
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.0018 Score=57.07 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCe------EEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc---
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLNYT------LTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC--- 107 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~~~------l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v--- 107 (122)
.+-++.+.+.|.-.++.. ++-++|+ |+++||||||-||..+..+-...++ .-=..+|-++|..
T Consensus 153 ~dQtEYV~dAIk~ILslY-r~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~-------sVntIITlssPH~a~P 224 (973)
T KOG3724|consen 153 LDQTEYVNDAIKYILSLY-RGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQG-------SVNTIITLSSPHAAPP 224 (973)
T ss_pred HHHHHHHHHHHHHHHHHh-hcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccc-------hhhhhhhhcCcccCCC
Confidence 344444444443333222 2235676 9999999999999766544432221 2234567776654
Q ss_pred --CCHHHHHhcc
Q 045044 108 --MSLNLAVRYE 117 (122)
Q Consensus 108 --~~~~~a~~~~ 117 (122)
.|..+.+.++
T Consensus 225 l~~D~~l~~fy~ 236 (973)
T KOG3724|consen 225 LPLDRFLLRFYL 236 (973)
T ss_pred CCCcHHHHHHHH
Confidence 3555555443
No 50
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=96.93 E-value=0.0019 Score=47.26 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
..+.+..++++...-+++++|||+||.+|..++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~ 116 (288)
T TIGR01250 82 FVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALK 116 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHh
Confidence 33444555555444569999999999999877653
No 51
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=96.92 E-value=0.002 Score=50.66 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHH--hCCCCeEEEeeccchHHHHHHHHH
Q 045044 43 VFDAKCEFLRGLVD--RNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 43 ~~~~~~~~l~~~~~--~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
+.+++...++.+.. ++++-+++++||||||++|..++.
T Consensus 142 ~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~ 181 (349)
T PLN02385 142 LVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHL 181 (349)
T ss_pred HHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHH
Confidence 34444445544432 234557999999999999976653
No 52
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=96.92 E-value=0.003 Score=51.25 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHH
Q 045044 42 WVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLA 113 (122)
Q Consensus 42 ~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a 113 (122)
..+.++...|+++.+++ +-+++++||||||-++.-+--.+... .+ ....--+.|++|+|-.|+....
T Consensus 101 ~~~~~lk~~ie~~~~~~-~~kv~li~HSmGgl~~~~fl~~~~~~--~W--~~~~i~~~i~i~~p~~Gs~~a~ 167 (389)
T PF02450_consen 101 EYFTKLKQLIEEAYKKN-GKKVVLIAHSMGGLVARYFLQWMPQE--EW--KDKYIKRFISIGTPFGGSPKAL 167 (389)
T ss_pred HHHHHHHHHHHHHHHhc-CCcEEEEEeCCCchHHHHHHHhccch--hh--HHhhhhEEEEeCCCCCCChHHH
Confidence 34455667777776666 88999999999998885432222111 00 0113457899999999887643
No 53
>PLN02511 hydrolase
Probab=96.91 E-value=0.0029 Score=51.08 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALL 78 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~ 78 (122)
+++...++.+..++|+-+++++||||||.++...
T Consensus 157 ~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~y 190 (388)
T PLN02511 157 GDLRQVVDHVAGRYPSANLYAAGWSLGANILVNY 190 (388)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHH
Confidence 4466677777778898899999999999987543
No 54
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=96.90 E-value=0.0021 Score=46.50 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
+..+.+.+++++...-++.+.|||+||.+|..++..
T Consensus 65 ~~~~~~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~ 100 (257)
T TIGR03611 65 HMADDVLQLLDALNIERFHFVGHALGGLIGLQLALR 100 (257)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHH
Confidence 344455555554444579999999999999887653
No 55
>PRK00870 haloalkane dehalogenase; Provisional
Probab=96.84 E-value=0.0024 Score=48.93 Aligned_cols=37 Identities=14% Similarity=0.101 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
++..+.+.+++++...-+++++|||+||.+|..++..
T Consensus 99 ~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~ 135 (302)
T PRK00870 99 ARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAE 135 (302)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHh
Confidence 3445556666665555589999999999999877643
No 56
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=96.84 E-value=0.007 Score=44.21 Aligned_cols=37 Identities=11% Similarity=0.111 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
..++.+.+..|+..+++.|||+||.+|.-++-.|...
T Consensus 54 ~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~ 90 (229)
T PF00975_consen 54 RYAEAIRARQPEGPYVLAGWSFGGILAFEMARQLEEA 90 (229)
T ss_dssp HHHHHHHHHTSSSSEEEEEETHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhCCCCCeeehccCccHHHHHHHHHHHHHh
Confidence 3444445556777999999999999999998888654
No 57
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=96.83 E-value=0.0022 Score=47.40 Aligned_cols=34 Identities=26% Similarity=0.148 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
..+.+.+++++...-++.++|||+||.+|..++.
T Consensus 81 ~~~~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~ 114 (278)
T TIGR03056 81 MAEDLSALCAAEGLSPDGVIGHSAGAAIALRLAL 114 (278)
T ss_pred HHHHHHHHHHHcCCCCceEEEECccHHHHHHHHH
Confidence 3444555555444456899999999999887654
No 58
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=96.78 E-value=0.0014 Score=51.91 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHH--HHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 39 ATRWVFDAKCEFLRGL--VDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 39 aa~~~~~~~~~~l~~~--~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
....+++++.+.+... .+++++--..+-|||||||||.+++..
T Consensus 105 ~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k 149 (313)
T KOG1455|consen 105 SFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALK 149 (313)
T ss_pred cHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhh
Confidence 3445566677777753 346788889999999999999887754
No 59
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=96.74 E-value=0.0038 Score=49.25 Aligned_cols=33 Identities=3% Similarity=-0.090 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
+...++.++++.+..++.++|||+||.++..++
T Consensus 122 ~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~ 154 (350)
T TIGR01836 122 IDKCVDYICRTSKLDQISLLGICQGGTFSLCYA 154 (350)
T ss_pred HHHHHHHHHHHhCCCcccEEEECHHHHHHHHHH
Confidence 555666677777778999999999999887654
No 60
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=96.72 E-value=0.0033 Score=48.12 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=23.3
Q ss_pred HHHHHHHHhCC-CCeEEEeeccchHHHHHHHHHH
Q 045044 49 EFLRGLVDRNL-NYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 49 ~~l~~~~~~~p-~~~l~vtGHSLGGavA~L~~~~ 81 (122)
+.+.+++++.. .-+++++||||||.++..++..
T Consensus 74 ~~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a~~ 107 (273)
T PLN02211 74 KPLIDFLSSLPENEKVILVGHSAGGLSVTQAIHR 107 (273)
T ss_pred HHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHh
Confidence 34444444443 3689999999999998877643
No 61
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=96.62 E-value=0.0046 Score=47.30 Aligned_cols=37 Identities=5% Similarity=-0.050 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhCCCC-eEEEeeccchHHHHHHHH
Q 045044 43 VFDAKCEFLRGLVDRNLNY-TLTFARHSLGAGVVALLV 79 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~~p~~-~l~vtGHSLGGavA~L~~ 79 (122)
..+++...++.+.++.|++ ++++.|||+||.+|..++
T Consensus 81 ~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a 118 (274)
T TIGR03100 81 IDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYA 118 (274)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHh
Confidence 4455677777776666665 599999999998887664
No 62
>PRK03204 haloalkane dehalogenase; Provisional
Probab=96.61 E-value=0.0042 Score=47.63 Aligned_cols=35 Identities=9% Similarity=0.045 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
...+.+..++++...-+++++|||+||.+|..++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~ 120 (286)
T PRK03204 86 EHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAV 120 (286)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECccHHHHHHHHH
Confidence 34455555565555567999999999999877654
No 63
>PRK10566 esterase; Provisional
Probab=96.61 E-value=0.0064 Score=44.99 Aligned_cols=35 Identities=11% Similarity=0.121 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhC--CCCeEEEeeccchHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRN--LNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 45 ~~~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~ 79 (122)
+++...+..+.++. ..-++.++|||+||.+|..++
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~ 125 (249)
T PRK10566 89 QEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIM 125 (249)
T ss_pred HHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHH
Confidence 44444444444432 235899999999999997554
No 64
>PRK03592 haloalkane dehalogenase; Provisional
Probab=96.56 E-value=0.0048 Score=46.95 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
.+.+..++++...-++.++|||+||.+|..++..
T Consensus 80 a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~ 113 (295)
T PRK03592 80 ARYLDAWFDALGLDDVVLVGHDWGSALGFDWAAR 113 (295)
T ss_pred HHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHh
Confidence 3444555554444689999999999999877643
No 65
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=96.52 E-value=0.0038 Score=46.73 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
+.+.++++....-++.++||||||.+|..++.
T Consensus 89 ~~l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~ 120 (282)
T TIGR03343 89 RAVKGLMDALDIEKAHLVGNSMGGATALNFAL 120 (282)
T ss_pred HHHHHHHHHcCCCCeeEEEECchHHHHHHHHH
Confidence 34555555555568999999999999987765
No 66
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=96.44 E-value=0.0065 Score=46.91 Aligned_cols=36 Identities=8% Similarity=-0.108 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+...+..++++...-+++++|||+||.+|..++...
T Consensus 81 ~~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~ 116 (306)
T TIGR01249 81 LVADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTH 116 (306)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHC
Confidence 444555556555555799999999999998776543
No 67
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=96.38 E-value=0.0095 Score=47.36 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
..+.+..++++...-+++++||||||.+|..++.
T Consensus 141 ~a~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 174 (360)
T PLN02679 141 WAELILDFLEEVVQKPTVLIGNSVGSLACVIAAS 174 (360)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHHH
Confidence 3344445555444468999999999998865543
No 68
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=96.35 E-value=0.0076 Score=46.99 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
++...+..++++...-++.++|||+||.+|..++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~ 216 (371)
T PRK14875 182 ELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAA 216 (371)
T ss_pred HHHHHHHHHHHhcCCccEEEEeechHHHHHHHHHH
Confidence 34455566666655568999999999999986654
No 69
>PLN02442 S-formylglutathione hydrolase
Probab=96.34 E-value=0.0078 Score=46.49 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 41 RWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
..+.+++.+.+++..+....-++.|+|||+||.+|..++.
T Consensus 123 ~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~ 162 (283)
T PLN02442 123 DYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYL 162 (283)
T ss_pred hhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHH
Confidence 3344555666666554434467999999999999877664
No 70
>PRK13604 luxD acyl transferase; Provisional
Probab=96.32 E-value=0.013 Score=46.61 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
+++...+.-+.++. ..+|.+.||||||++|.+++
T Consensus 93 ~Dl~aaid~lk~~~-~~~I~LiG~SmGgava~~~A 126 (307)
T PRK13604 93 NSLLTVVDWLNTRG-INNLGLIAASLSARIAYEVI 126 (307)
T ss_pred HHHHHHHHHHHhcC-CCceEEEEECHHHHHHHHHh
Confidence 33444444444443 35799999999999986554
No 71
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=96.28 E-value=0.0086 Score=47.22 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhCCCCe-EEEeeccchHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYT-LTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~-l~vtGHSLGGavA~L~~~~ 81 (122)
++..+.+.+++++..--+ +.++||||||.+|..++..
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~ 147 (351)
T TIGR01392 110 RDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAID 147 (351)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHH
Confidence 344455555555543345 9999999999999877654
No 72
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=96.26 E-value=0.015 Score=44.98 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=38.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhh-ccccCCCCCCceEEEEecCCCcC
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQN-LDKFGNIKRNKIRCFAIAPTKCM 108 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~-~~~~~~~~~~~v~~~tfg~P~v~ 108 (122)
..+.+-++|+. ..|+.+.++|---++-++||||||-.+. ..++... .+.+ +.--+++++|.|==+
T Consensus 80 ~~~~~qa~wl~----~vl~~L~~~Y~~~~~N~VGHSmGg~~~~--~yl~~~~~~~~~----P~l~K~V~Ia~pfng 145 (255)
T PF06028_consen 80 ANYKKQAKWLK----KVLKYLKKKYHFKKFNLVGHSMGGLSWT--YYLENYGNDKNL----PKLNKLVTIAGPFNG 145 (255)
T ss_dssp CHHHHHHHHHH----HHHHHHHHCC--SEEEEEEETHHHHHHH--HHHHHCTTGTTS-----EEEEEEEES--TTT
T ss_pred CCHHHHHHHHH----HHHHHHHHhcCCCEEeEEEECccHHHHH--HHHHHhccCCCC----cccceEEEeccccCc
Confidence 35566666554 4667777777777899999999987664 2233211 1122 255789999987543
No 73
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=96.21 E-value=0.019 Score=48.68 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
+.+...++.+.+....-++.++|||+||.+++++.
T Consensus 246 ~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~a~al 280 (532)
T TIGR01838 246 DGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTAL 280 (532)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECcCcHHHHHHH
Confidence 34566677766666777899999999999876633
No 74
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=96.15 E-value=0.021 Score=41.96 Aligned_cols=55 Identities=22% Similarity=0.165 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhC-CCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCC
Q 045044 45 DAKCEFLRGLVDRN-LNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMS 109 (122)
Q Consensus 45 ~~~~~~l~~~~~~~-p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~ 109 (122)
..+...++.+-..+ |+-++++.|||.|.-++.++.-. .. ..--.++.+|+|.++-
T Consensus 92 ~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~---~~-------~~vddvv~~GSPG~g~ 147 (177)
T PF06259_consen 92 PRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQ---GG-------LRVDDVVLVGSPGMGV 147 (177)
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhh---CC-------CCcccEEEECCCCCCC
Confidence 34444555554555 88999999999999988877544 11 1233478899999874
No 75
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=96.05 E-value=0.02 Score=41.36 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=23.8
Q ss_pred CCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 58 NLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 58 ~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
.+.-+|++.|+|-||.+|..++....+.
T Consensus 68 ~d~~~i~l~G~SAGg~la~~~~~~~~~~ 95 (211)
T PF07859_consen 68 IDPERIVLIGDSAGGHLALSLALRARDR 95 (211)
T ss_dssp EEEEEEEEEEETHHHHHHHHHHHHHHHT
T ss_pred ccccceEEeecccccchhhhhhhhhhhh
Confidence 4456999999999999999999887654
No 76
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=96.05 E-value=0.013 Score=46.80 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHh--CCCCeEEEeeccchHHHHHHHHHHHHh
Q 045044 44 FDAKCEFLRGLVDR--NLNYTLTFARHSLGAGVVALLVLIVVQ 84 (122)
Q Consensus 44 ~~~~~~~l~~~~~~--~p~~~l~vtGHSLGGavA~L~~~~l~~ 84 (122)
-..+...|+.+.+. .+--+|.++||||||-||.+++-.+..
T Consensus 131 g~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~ 173 (331)
T PF00151_consen 131 GRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKG 173 (331)
T ss_dssp HHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccC
Confidence 33345555555532 356789999999999999999988865
No 77
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=96.04 E-value=0.015 Score=42.84 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
....+++++++.+.-.++++|+||||-.|..++-.+
T Consensus 45 a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~ 80 (187)
T PF05728_consen 45 AIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERY 80 (187)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHh
Confidence 344566666666555599999999999998876433
No 78
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=96.03 E-value=0.014 Score=39.10 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.3
Q ss_pred CCCeEEEeeccchHHHHHHHHH
Q 045044 59 LNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 59 p~~~l~vtGHSLGGavA~L~~~ 80 (122)
..-++.+.|||+||.+|..++.
T Consensus 59 ~~~~i~l~G~S~Gg~~a~~~~~ 80 (145)
T PF12695_consen 59 DPDRIILIGHSMGGAIAANLAA 80 (145)
T ss_dssp TCCEEEEEEETHHHHHHHHHHH
T ss_pred CCCcEEEEEEccCcHHHHHHhh
Confidence 3468999999999998877654
No 79
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=96.02 E-value=0.012 Score=46.15 Aligned_cols=36 Identities=19% Similarity=0.001 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCe-EEEeeccchHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYT-LTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~-l~vtGHSLGGavA~L~~~~l 82 (122)
..+.+..+++...--+ ++++||||||.||.-++...
T Consensus 123 ~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~ 159 (343)
T PRK08775 123 QADAIALLLDALGIARLHAFVGYSYGALVGLQFASRH 159 (343)
T ss_pred HHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHC
Confidence 3444555555433224 57999999999998777543
No 80
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=95.93 E-value=0.016 Score=42.56 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCC--CCeEEEeeccchHHHHHHHHH
Q 045044 48 CEFLRGLVDRNL--NYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 48 ~~~l~~~~~~~p--~~~l~vtGHSLGGavA~L~~~ 80 (122)
...++.+.++++ .-++.+.|||+||.+|..++.
T Consensus 80 ~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~ 114 (212)
T TIGR01840 80 HQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGC 114 (212)
T ss_pred HHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHH
Confidence 344444444443 248999999999999876654
No 81
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=95.92 E-value=0.013 Score=41.67 Aligned_cols=20 Identities=20% Similarity=0.121 Sum_probs=17.1
Q ss_pred CeEEEeeccchHHHHHHHHH
Q 045044 61 YTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~ 80 (122)
-+++++|||+||.+|..++.
T Consensus 65 ~~~~lvG~S~Gg~~a~~~a~ 84 (245)
T TIGR01738 65 DPAIWLGWSLGGLVALHIAA 84 (245)
T ss_pred CCeEEEEEcHHHHHHHHHHH
Confidence 58999999999999977664
No 82
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=95.92 E-value=0.036 Score=42.97 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
+++...++.+. +....+++++||||||.+|..++
T Consensus 84 ~Dv~~ai~~L~-~~~~~~v~LvG~SmGG~vAl~~A 117 (266)
T TIGR03101 84 EDVAAAYRWLI-EQGHPPVTLWGLRLGALLALDAA 117 (266)
T ss_pred HHHHHHHHHHH-hcCCCCEEEEEECHHHHHHHHHH
Confidence 33444433333 33456899999999999998765
No 83
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=95.87 E-value=0.02 Score=43.81 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=23.5
Q ss_pred HHHHHHHHHHh-CC--CCeEEEeeccchHHHHHHHHHH
Q 045044 47 KCEFLRGLVDR-NL--NYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 47 ~~~~l~~~~~~-~p--~~~l~vtGHSLGGavA~L~~~~ 81 (122)
+.+.|..++++ ++ .-++.++|||+||.+|..++..
T Consensus 121 ~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~ 158 (275)
T TIGR02821 121 IVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALK 158 (275)
T ss_pred HHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHh
Confidence 33444444443 22 3579999999999999877654
No 84
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=95.87 E-value=0.039 Score=45.88 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhCCC---CeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc
Q 045044 43 VFDAKCEFLRGLVDRNLN---YTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC 107 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~~p~---~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v 107 (122)
+-+++...|+.+++++|+ -++.|+|||.||-.+-.++..+.+..+. +....-+++-+.+|-|-+
T Consensus 150 ~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~-~~~~~inLkGi~IGNg~~ 216 (462)
T PTZ00472 150 VSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKK-GDGLYINLAGLAVGNGLT 216 (462)
T ss_pred HHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccc-cCCceeeeEEEEEecccc
Confidence 444566778888888887 5799999999999998888777543211 111234677777777654
No 85
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=95.84 E-value=0.022 Score=46.22 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=17.6
Q ss_pred CeEEEeeccchHHHHHHHHHH
Q 045044 61 YTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~~ 81 (122)
-++++.||||||.+|..++..
T Consensus 176 ~~~~lvGhS~GG~la~~~a~~ 196 (402)
T PLN02894 176 SNFILLGHSFGGYVAAKYALK 196 (402)
T ss_pred CCeEEEEECHHHHHHHHHHHh
Confidence 479999999999999876643
No 86
>PLN00021 chlorophyllase
Probab=95.80 E-value=0.018 Score=45.56 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=19.2
Q ss_pred CeEEEeeccchHHHHHHHHHHH
Q 045044 61 YTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~~l 82 (122)
-++.+.|||+||.+|..++...
T Consensus 126 ~~v~l~GHS~GG~iA~~lA~~~ 147 (313)
T PLN00021 126 SKLALAGHSRGGKTAFALALGK 147 (313)
T ss_pred hheEEEEECcchHHHHHHHhhc
Confidence 4799999999999999888654
No 87
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=95.78 E-value=0.022 Score=47.37 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHh--CCCCeEEEeeccchHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDR--NLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 45 ~~~~~~l~~~~~~--~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
+.+...|+.+.++ .+--++.++||||||.+|..++..
T Consensus 101 ~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~ 139 (442)
T TIGR03230 101 KDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSL 139 (442)
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHh
Confidence 3344455544332 345689999999999999988753
No 88
>PRK11460 putative hydrolase; Provisional
Probab=95.70 E-value=0.032 Score=41.82 Aligned_cols=33 Identities=18% Similarity=-0.008 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhC--CCCeEEEeeccchHHHHHHHH
Q 045044 47 KCEFLRGLVDRN--LNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 47 ~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~ 79 (122)
+.+.++.+.+++ +.-+|++.|||+||.+|..++
T Consensus 87 l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a 121 (232)
T PRK11460 87 FIETVRYWQQQSGVGASATALIGFSQGAIMALEAV 121 (232)
T ss_pred HHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHH
Confidence 344444444443 345899999999999997554
No 89
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=95.69 E-value=0.022 Score=45.68 Aligned_cols=37 Identities=11% Similarity=-0.119 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCCCe-EEEeeccchHHHHHHHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYT-LTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~-l~vtGHSLGGavA~L~~~~l 82 (122)
...+.+.+++++..--+ .+++||||||.+|..++...
T Consensus 131 ~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~ 168 (379)
T PRK00175 131 DWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDY 168 (379)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhC
Confidence 34455556665555456 58999999999998777653
No 90
>PLN02578 hydrolase
Probab=95.62 E-value=0.023 Score=45.00 Aligned_cols=23 Identities=13% Similarity=-0.009 Sum_probs=18.9
Q ss_pred CCeEEEeeccchHHHHHHHHHHH
Q 045044 60 NYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~~~l 82 (122)
.-+++++|||+||.+|..++...
T Consensus 151 ~~~~~lvG~S~Gg~ia~~~A~~~ 173 (354)
T PLN02578 151 KEPAVLVGNSLGGFTALSTAVGY 173 (354)
T ss_pred cCCeEEEEECHHHHHHHHHHHhC
Confidence 35789999999999998877644
No 91
>PRK10349 carboxylesterase BioH; Provisional
Probab=95.60 E-value=0.02 Score=42.46 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=17.2
Q ss_pred CeEEEeeccchHHHHHHHHH
Q 045044 61 YTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~ 80 (122)
-+++++|||+||.+|..++.
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~ 93 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIAL 93 (256)
T ss_pred CCeEEEEECHHHHHHHHHHH
Confidence 57899999999999987654
No 92
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=95.58 E-value=0.025 Score=47.45 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=22.5
Q ss_pred HHHHhCCCCeEEEeeccchHHHHHHHHHH
Q 045044 53 GLVDRNLNYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 53 ~~~~~~p~~~l~vtGHSLGGavA~L~~~~ 81 (122)
.+++....-++.++||||||.+|..++..
T Consensus 266 ~ll~~lg~~k~~LVGhSmGG~iAl~~A~~ 294 (481)
T PLN03087 266 SVLERYKVKSFHIVAHSLGCILALALAVK 294 (481)
T ss_pred HHHHHcCCCCEEEEEECHHHHHHHHHHHh
Confidence 45555555689999999999999877653
No 93
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=95.53 E-value=0.055 Score=40.77 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhCCCC-eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCC
Q 045044 42 WVFDAKCEFLRGLVDRNLNY-TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPT 105 (122)
Q Consensus 42 ~~~~~~~~~l~~~~~~~p~~-~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P 105 (122)
.-|.++..+.+..++.+++- -+++.|||-|+.+..-| |+++.+.-+ ...+-|-+|.+|-|
T Consensus 75 ~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~L---L~e~~~~~p-l~~rLVAAYliG~~ 135 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRL---LKEEIAGDP-LRKRLVAAYLIGYP 135 (207)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHH---HHHHhcCch-HHhhhheeeecCcc
Confidence 34667888888888877554 69999999998765432 333211001 12456778888876
No 94
>PRK06489 hypothetical protein; Provisional
Probab=95.48 E-value=0.028 Score=44.51 Aligned_cols=21 Identities=14% Similarity=-0.064 Sum_probs=16.6
Q ss_pred CeE-EEeeccchHHHHHHHHHH
Q 045044 61 YTL-TFARHSLGAGVVALLVLI 81 (122)
Q Consensus 61 ~~l-~vtGHSLGGavA~L~~~~ 81 (122)
-++ +++||||||.+|..++..
T Consensus 153 ~~~~~lvG~SmGG~vAl~~A~~ 174 (360)
T PRK06489 153 KHLRLILGTSMGGMHAWMWGEK 174 (360)
T ss_pred CceeEEEEECHHHHHHHHHHHh
Confidence 355 489999999999877644
No 95
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=95.41 E-value=0.03 Score=39.05 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
...+..++++....+++++|||+||.+|..++...
T Consensus 75 ~~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~ 109 (282)
T COG0596 75 ADDLAALLDALGLEKVVLVGHSMGGAVALALALRH 109 (282)
T ss_pred HHHHHHHHHHhCCCceEEEEecccHHHHHHHHHhc
Confidence 44555555555555699999999988887766544
No 96
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=95.38 E-value=0.1 Score=38.92 Aligned_cols=54 Identities=19% Similarity=0.149 Sum_probs=43.6
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHh
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQ 84 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~ 84 (122)
.-..|.......+.+++.+.|++.+++..+...++.=|||||+.++=++..+.+
T Consensus 94 n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~ 147 (216)
T PF00091_consen 94 NWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAE 147 (216)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhccccccccceecccccceeccccccccch
Confidence 356777777777888899999999999899999999999999986655554443
No 97
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=95.35 E-value=0.031 Score=40.69 Aligned_cols=39 Identities=15% Similarity=0.067 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhC--CCCeEEEeeccchHHHHHHHHH
Q 045044 42 WVFDAKCEFLRGLVDRN--LNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 42 ~~~~~~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~~ 80 (122)
...+++...++.+.+++ ..-+|.++|||.||.+|.+++.
T Consensus 43 ~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~ 83 (213)
T PF00326_consen 43 ADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAAT 83 (213)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhccccccceeEEEEcccccccccchhhc
Confidence 34566777777777664 2368999999999999987765
No 98
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=95.33 E-value=0.091 Score=39.79 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhcc
Q 045044 40 TRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYE 117 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~ 117 (122)
+.+--+.+.+.|+.+.+..+.-+|.|.+||||+-+..-+--.+...... +. ...++.-+.+..|-+-...|.+...
T Consensus 72 a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~-~~-~~~~~~~viL~ApDid~d~f~~~~~ 147 (233)
T PF05990_consen 72 ARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGER-PD-VKARFDNVILAAPDIDNDVFRSQLP 147 (233)
T ss_pred HHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccc-hh-hHhhhheEEEECCCCCHHHHHHHHH
Confidence 3333444566666666555778999999999988765444344333210 00 0135666778889888777766554
No 99
>PRK05855 short chain dehydrogenase; Validated
Probab=95.23 E-value=0.034 Score=45.77 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=15.7
Q ss_pred CCeEEEeeccchHHHHHHHH
Q 045044 60 NYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~ 79 (122)
+-.++++|||+||.+|..++
T Consensus 93 ~~~~~lvGhS~Gg~~a~~~a 112 (582)
T PRK05855 93 DRPVHLLAHDWGSIQGWEAV 112 (582)
T ss_pred CCcEEEEecChHHHHHHHHH
Confidence 34599999999998876544
No 100
>PRK07581 hypothetical protein; Validated
Probab=95.21 E-value=0.045 Score=42.69 Aligned_cols=22 Identities=14% Similarity=-0.026 Sum_probs=17.7
Q ss_pred Ce-EEEeeccchHHHHHHHHHHH
Q 045044 61 YT-LTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 61 ~~-l~vtGHSLGGavA~L~~~~l 82 (122)
-+ ..++||||||.+|.-++...
T Consensus 123 ~~~~~lvG~S~GG~va~~~a~~~ 145 (339)
T PRK07581 123 ERLALVVGWSMGAQQTYHWAVRY 145 (339)
T ss_pred CceEEEEEeCHHHHHHHHHHHHC
Confidence 46 47899999999998777543
No 101
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=95.17 E-value=0.15 Score=38.68 Aligned_cols=51 Identities=12% Similarity=0.018 Sum_probs=37.7
Q ss_pred CCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHH
Q 045044 59 LNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLA 113 (122)
Q Consensus 59 p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a 113 (122)
++-+++|.|+|.|+.+|+...-.+..... .+...++.+.+|-|+--+--+.
T Consensus 46 ~~~~vvV~GySQGA~Va~~~~~~l~~~~~----~~~~~l~fVl~gnP~rp~GG~~ 96 (225)
T PF08237_consen 46 AGGPVVVFGYSQGAVVASNVLRRLAADGD----PPPDDLSFVLIGNPRRPNGGIL 96 (225)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHhcCC----CCcCceEEEEecCCCCCCCcch
Confidence 67889999999999999988877765321 1236889999998865443333
No 102
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=95.14 E-value=0.038 Score=44.96 Aligned_cols=38 Identities=11% Similarity=-0.075 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCCCeEE-EeeccchHHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLT-FARHSLGAGVVALLVLIV 82 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~-vtGHSLGGavA~L~~~~l 82 (122)
.++...+.+++++..--++. ++||||||.+|..++...
T Consensus 144 ~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~ 182 (389)
T PRK06765 144 LDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHY 182 (389)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHC
Confidence 44555666666665555675 999999999998766543
No 103
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=94.99 E-value=0.048 Score=44.16 Aligned_cols=35 Identities=29% Similarity=0.273 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhC--C-CCeEEEeeccchHHHHHHH
Q 045044 44 FDAKCEFLRGLVDRN--L-NYTLTFARHSLGAGVVALL 78 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~--p-~~~l~vtGHSLGGavA~L~ 78 (122)
...-...++.+.++. | --+|+.-||||||+|++.+
T Consensus 195 v~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~A 232 (365)
T PF05677_consen 195 VKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEA 232 (365)
T ss_pred HHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHH
Confidence 333344455554432 2 2579999999999999863
No 104
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=94.92 E-value=0.05 Score=41.94 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhC--CCCeEEEeeccchHHHHH
Q 045044 47 KCEFLRGLVDRN--LNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 47 ~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~ 76 (122)
..+.|++++.++ |+.+|++.|||.|+=|+.
T Consensus 68 k~~~i~~~~~~~~~~~~~liLiGHSIGayi~l 99 (266)
T PF10230_consen 68 KIDFIKELIPQKNKPNVKLILIGHSIGAYIAL 99 (266)
T ss_pred HHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHH
Confidence 567778877766 788999999999988763
No 105
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=94.91 E-value=0.063 Score=42.67 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCC---CeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHH
Q 045044 40 TRWVFDAKCEFLRGLVDRNLN---YTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNL 112 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~~p~---~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~ 112 (122)
++.++.+....+.-+. ..|+ -+|.++|.|.||++|.+++. | . ++|+...-..|-.+|...
T Consensus 152 yr~~~~D~~ravd~l~-slpevD~~rI~v~G~SqGG~lal~~aa-L--d---------~rv~~~~~~vP~l~d~~~ 214 (320)
T PF05448_consen 152 YRRVYLDAVRAVDFLR-SLPEVDGKRIGVTGGSQGGGLALAAAA-L--D---------PRVKAAAADVPFLCDFRR 214 (320)
T ss_dssp HHHHHHHHHHHHHHHH-TSTTEEEEEEEEEEETHHHHHHHHHHH-H--S---------ST-SEEEEESESSSSHHH
T ss_pred HHHHHHHHHHHHHHHH-hCCCcCcceEEEEeecCchHHHHHHHH-h--C---------ccccEEEecCCCccchhh
Confidence 3344444444444443 3464 48999999999999988764 3 1 356666666676666543
No 106
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.85 E-value=0.066 Score=41.51 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
....+..+.+..|+.-..+.|||+||.+|.=++..|...
T Consensus 51 a~~yv~~Ir~~QP~GPy~L~G~S~GG~vA~evA~qL~~~ 89 (257)
T COG3319 51 AAAYVAAIRRVQPEGPYVLLGWSLGGAVAFEVAAQLEAQ 89 (257)
T ss_pred HHHHHHHHHHhCCCCCEEEEeeccccHHHHHHHHHHHhC
Confidence 444555555567999999999999999999999888655
No 107
>PRK10162 acetyl esterase; Provisional
Probab=94.82 E-value=0.052 Score=42.59 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=22.3
Q ss_pred CCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 60 NYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
.-+|.|.|||.||.+|..+++.++..
T Consensus 153 ~~~i~l~G~SaGG~la~~~a~~~~~~ 178 (318)
T PRK10162 153 MSRIGFAGDSAGAMLALASALWLRDK 178 (318)
T ss_pred hhHEEEEEECHHHHHHHHHHHHHHhc
Confidence 35899999999999999998887643
No 108
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.79 E-value=0.13 Score=39.77 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=36.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
..+..++.....+-+.+...+.. -+++.-..+-||||||.+|-=++..+.+.
T Consensus 47 r~~ep~~~di~~Lad~la~el~~---~~~d~P~alfGHSmGa~lAfEvArrl~~~ 98 (244)
T COG3208 47 RFGEPLLTDIESLADELANELLP---PLLDAPFALFGHSMGAMLAFEVARRLERA 98 (244)
T ss_pred ccCCcccccHHHHHHHHHHHhcc---ccCCCCeeecccchhHHHHHHHHHHHHHc
Confidence 34555555555555655555443 35677799999999999998888777655
No 109
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=94.77 E-value=0.052 Score=40.27 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 40 TRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
.+.+.+++.+.|++-....++. ..|.||||||-.|.-++
T Consensus 95 ~~~l~~el~p~i~~~~~~~~~~-~~i~G~S~GG~~Al~~~ 133 (251)
T PF00756_consen 95 ETFLTEELIPYIEANYRTDPDR-RAIAGHSMGGYGALYLA 133 (251)
T ss_dssp HHHHHTHHHHHHHHHSSEEECC-EEEEEETHHHHHHHHHH
T ss_pred ceehhccchhHHHHhcccccce-eEEeccCCCcHHHHHHH
Confidence 3566677777777765444444 89999999998886544
No 110
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=94.53 E-value=0.067 Score=43.36 Aligned_cols=38 Identities=16% Similarity=0.054 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
...+.|++...+..--|.+++|||+||=+|+.-++..-
T Consensus 145 ~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyP 182 (365)
T KOG4409|consen 145 EFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYP 182 (365)
T ss_pred HHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhCh
Confidence 45567777776666679999999999999987666553
No 111
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=94.51 E-value=0.067 Score=42.54 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
....++++..++-.-++.++|||+||-+|..+|...
T Consensus 114 ~v~~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~ 149 (326)
T KOG1454|consen 114 LVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYY 149 (326)
T ss_pred HHHHHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhC
Confidence 344555555555555699999999999998888765
No 112
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=94.48 E-value=0.17 Score=39.13 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=23.4
Q ss_pred CCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 60 NYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
.-+|.+.|||-||.+|++++...+.+
T Consensus 151 p~~i~v~GdSAGG~La~~~a~~~~~~ 176 (312)
T COG0657 151 PSRIAVAGDSAGGHLALALALAARDR 176 (312)
T ss_pred ccceEEEecCcccHHHHHHHHHHHhc
Confidence 46899999999999999999999865
No 113
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=94.34 E-value=0.06 Score=46.46 Aligned_cols=33 Identities=15% Similarity=0.050 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVAL 77 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L 77 (122)
..+...|+.+.+.+-+-+++|+||||||-++.-
T Consensus 197 ~rLK~lIE~ay~~nggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 197 SRLKSNIELMVATNGGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHH
Confidence 334455555555555789999999999977653
No 114
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=94.33 E-value=0.16 Score=41.96 Aligned_cols=54 Identities=17% Similarity=0.141 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCC
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTK 106 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~ 106 (122)
+++...++-+.++||..++..+|-||||. ++.-.|-+..++ .+-+.+++...|=
T Consensus 182 ~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~---iL~nYLGE~g~~-----~~l~~a~~v~~Pw 235 (409)
T KOG1838|consen 182 EDLREVVNHIKKRYPQAPLFAVGFSMGGN---ILTNYLGEEGDN-----TPLIAAVAVCNPW 235 (409)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEecchHH---HHHHHhhhccCC-----CCceeEEEEeccc
Confidence 34777888888899999999999999987 566677655432 2456667766663
No 115
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=94.10 E-value=0.086 Score=50.12 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
+.+.+.+++++...-+++++||||||.+|.-++.
T Consensus 1431 ~a~~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~ 1464 (1655)
T PLN02980 1431 VADLLYKLIEHITPGKVTLVGYSMGARIALYMAL 1464 (1655)
T ss_pred HHHHHHHHHHHhCCCCEEEEEECHHHHHHHHHHH
Confidence 4444555555544458999999999999987664
No 116
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=94.09 E-value=0.53 Score=38.06 Aligned_cols=57 Identities=18% Similarity=0.171 Sum_probs=37.1
Q ss_pred CCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhccccc
Q 045044 59 LNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEWII 120 (122)
Q Consensus 59 p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~i 120 (122)
-+..|+++|||||+-+-.=+-..|.+. +..+ ---.++-+|.|-..|++--++.++.|
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~-~~~~----lVe~VvL~Gapv~~~~~~W~~~r~vV 274 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAER-KAFG----LVENVVLMGAPVPSDPEEWRKIRSVV 274 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhc-cccC----eEeeEEEecCCCCCCHHHHHHHHHHc
Confidence 345699999999987766555566543 2221 22457889999998876555444433
No 117
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=94.01 E-value=0.068 Score=40.47 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALL 78 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~ 78 (122)
.++...|.+.++. .+.||=|+|||+||.+|.-.
T Consensus 60 ~~l~~fI~~Vl~~-TGakVDIVgHS~G~~iaR~y 92 (219)
T PF01674_consen 60 KQLRAFIDAVLAY-TGAKVDIVGHSMGGTIARYY 92 (219)
T ss_dssp HHHHHHHHHHHHH-HT--EEEEEETCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hCCEEEEEEcCCcCHHHHHH
Confidence 4566666666644 44499999999999888643
No 118
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=93.96 E-value=0.13 Score=38.13 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHh
Q 045044 50 FLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQ 84 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~ 84 (122)
.+.++.+..-+-.|++-||||||-+|++++-.+..
T Consensus 78 ~~aql~~~l~~gpLi~GGkSmGGR~aSmvade~~A 112 (213)
T COG3571 78 AIAQLRAGLAEGPLIIGGKSMGGRVASMVADELQA 112 (213)
T ss_pred HHHHHHhcccCCceeeccccccchHHHHHHHhhcC
Confidence 33444444456689999999999999999877743
No 119
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=93.79 E-value=0.17 Score=35.46 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=23.2
Q ss_pred hCCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 57 RNLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 57 ~~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
..+...+.+.|||+||.+|..++..+...
T Consensus 60 ~~~~~~~~l~g~s~Gg~~a~~~a~~l~~~ 88 (212)
T smart00824 60 AAGGRPFVLVGHSSGGLLAHAVAARLEAR 88 (212)
T ss_pred hcCCCCeEEEEECHHHHHHHHHHHHHHhC
Confidence 34566789999999999998888777543
No 120
>PLN02872 triacylglycerol lipase
Probab=93.76 E-value=0.11 Score=42.47 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~ 76 (122)
++...++.+++. ...++.++|||+||.++.
T Consensus 146 Dl~a~id~i~~~-~~~~v~~VGhS~Gg~~~~ 175 (395)
T PLN02872 146 DLAEMIHYVYSI-TNSKIFIVGHSQGTIMSL 175 (395)
T ss_pred HHHHHHHHHHhc-cCCceEEEEECHHHHHHH
Confidence 344555555443 346899999999998885
No 121
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=93.76 E-value=0.14 Score=37.61 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=29.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 33 HNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 33 H~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
-.++.++++.+.+-+...+++. .+.-+|++.|.|.||++|.-+++
T Consensus 80 ~~~i~~s~~~l~~li~~~~~~~---i~~~ri~l~GFSQGa~~al~~~l 124 (216)
T PF02230_consen 80 EAGIEESAERLDELIDEEVAYG---IDPSRIFLGGFSQGAAMALYLAL 124 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-----GGGEEEEEETHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---CChhheehhhhhhHHHHHHHHHH
Confidence 4566666666654444333322 35578999999999999976654
No 122
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=93.62 E-value=0.13 Score=41.81 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
..+.|..++++....++.++|||+||.+|..++.
T Consensus 183 ~a~~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~ 216 (383)
T PLN03084 183 YVSSLESLIDELKSDKVSLVVQGYFSPPVVKYAS 216 (383)
T ss_pred HHHHHHHHHHHhCCCCceEEEECHHHHHHHHHHH
Confidence 3445555555444457999999999988765554
No 123
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=93.40 E-value=0.26 Score=39.86 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=32.6
Q ss_pred HHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHH
Q 045044 55 VDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAV 114 (122)
Q Consensus 55 ~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~ 114 (122)
+++..-.++-+||-||||.+|+|++... +.++-++.+=+|..-+.-|.+
T Consensus 169 l~~~G~~~~g~~G~SmGG~~A~laa~~~-----------p~pv~~vp~ls~~sAs~vFt~ 217 (348)
T PF09752_consen 169 LEREGYGPLGLTGISMGGHMAALAASNW-----------PRPVALVPCLSWSSASVVFTE 217 (348)
T ss_pred HHhcCCCceEEEEechhHhhHHhhhhcC-----------CCceeEEEeecccCCCcchhh
Confidence 3343444899999999999999988533 234666666666665544443
No 124
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=93.35 E-value=0.13 Score=41.12 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGA 72 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGG 72 (122)
+++...++.....+...++.+.||||||
T Consensus 107 ~dv~~Fi~~v~~~~~~~~~~l~GHsmGG 134 (315)
T KOG2382|consen 107 EDVKLFIDGVGGSTRLDPVVLLGHSMGG 134 (315)
T ss_pred HHHHHHHHHcccccccCCceecccCcch
Confidence 3333344443333357899999999999
No 125
>COG1647 Esterase/lipase [General function prediction only]
Probab=93.29 E-value=0.24 Score=38.10 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHh-CCCCeEEEeeccchHHHHHHHH
Q 045044 43 VFDAKCEFLRGLVDR-NLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~-~p~~~l~vtGHSLGGavA~L~~ 79 (122)
=|..+.+..+.+.++ |+ +|.++|-||||-+|..++
T Consensus 68 W~~~v~d~Y~~L~~~gy~--eI~v~GlSmGGv~alkla 103 (243)
T COG1647 68 WWEDVEDGYRDLKEAGYD--EIAVVGLSMGGVFALKLA 103 (243)
T ss_pred HHHHHHHHHHHHHHcCCC--eEEEEeecchhHHHHHHH
Confidence 345566666776632 33 799999999998776665
No 126
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=92.89 E-value=0.091 Score=42.69 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.1
Q ss_pred CeEEEeeccchHHHHHHH
Q 045044 61 YTLTFARHSLGAGVVALL 78 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~ 78 (122)
-+|.+.|||+|||.|.-+
T Consensus 228 ~~i~~~GHSFGGATa~~~ 245 (379)
T PF03403_consen 228 SRIGLAGHSFGGATALQA 245 (379)
T ss_dssp EEEEEEEETHHHHHHHHH
T ss_pred hheeeeecCchHHHHHHH
Confidence 369999999999998743
No 127
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=92.74 E-value=0.17 Score=38.25 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCC--CCeEEEeeccchHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNL--NYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 47 ~~~~l~~~~~~~p--~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+...++.+..+|+ .-+|.++|+|-||++|..++...
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~ 118 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAY 118 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhC
Confidence 3445555555664 46899999999999998766543
No 128
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.73 E-value=0.054 Score=42.81 Aligned_cols=52 Identities=19% Similarity=0.218 Sum_probs=37.2
Q ss_pred CCchhHhHHH-----HHHHHHHHHHHHHHHHHHhC--CCCeEEEeeccchHHHHHHHHH
Q 045044 29 GGYVHNGLLK-----ATRWVFDAKCEFLRGLVDRN--LNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 29 ~g~vH~Gf~~-----aa~~~~~~~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~~ 80 (122)
.|..-+|.++ -++.++.+...+++-+..-. .+-+|-++|-|.|||+|.+++.
T Consensus 137 pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaa 195 (321)
T COG3458 137 PGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAA 195 (321)
T ss_pred CceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhh
Confidence 3555677776 45566777777777666543 3679999999999999976653
No 129
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=92.63 E-value=0.23 Score=40.57 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=16.9
Q ss_pred CeEEEeeccchHHHHHHHH
Q 045044 61 YTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~ 79 (122)
-+|.++|||+||.+|..++
T Consensus 265 ~ri~l~G~S~GG~~Al~~A 283 (414)
T PRK05077 265 TRVAAFGFRFGANVAVRLA 283 (414)
T ss_pred ccEEEEEEChHHHHHHHHH
Confidence 5899999999999998765
No 130
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=92.42 E-value=0.34 Score=38.64 Aligned_cols=57 Identities=7% Similarity=0.046 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSL 110 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~ 110 (122)
++...+.+.+.+..--++.+.|||+||-+..+ +..+.+ .+..--..++.|.|.-+..
T Consensus 112 ql~~~V~~~l~~~ga~~v~LigHS~GG~~~ry----~~~~~~----~~~~V~~~~tl~tp~~Gt~ 168 (336)
T COG1075 112 QLFAYVDEVLAKTGAKKVNLIGHSMGGLDSRY----YLGVLG----GANRVASVVTLGTPHHGTE 168 (336)
T ss_pred HHHHHHHHHHhhcCCCceEEEeecccchhhHH----HHhhcC----ccceEEEEEEeccCCCCch
Confidence 34555666666655568999999999998863 223321 0123456788898887754
No 131
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=92.21 E-value=0.76 Score=36.54 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhCCCC---eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCC
Q 045044 44 FDAKCEFLRGLVDRNLNY---TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMS 109 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~---~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~ 109 (122)
-+++...|++++.++|++ .+.|+|-|.||-.+..++..|.+..... ..+.-+++-+..|.|-+..
T Consensus 116 a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~-~~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 116 AEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKG-DQPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp HHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC---STTSEEEEEEEESE-SBH
T ss_pred HHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccc-cccccccccceecCccccc
Confidence 344556777777777754 6999999999999888888776553221 1135689999999887754
No 132
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=91.76 E-value=0.55 Score=37.93 Aligned_cols=39 Identities=23% Similarity=0.105 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhc
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNL 86 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~ 86 (122)
.++...+..+..++|..+++.+|-||||. .++..+-++.
T Consensus 132 ~D~~~~l~~l~~~~~~r~~~avG~SLGgn---mLa~ylgeeg 170 (345)
T COG0429 132 EDIRFFLDWLKARFPPRPLYAVGFSLGGN---MLANYLGEEG 170 (345)
T ss_pred hHHHHHHHHHHHhCCCCceEEEEecccHH---HHHHHHHhhc
Confidence 45666777777778999999999999995 3444555554
No 133
>PRK04940 hypothetical protein; Provisional
Probab=91.69 E-value=0.51 Score=34.82 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=17.5
Q ss_pred eEEEeeccchHHHHHHHHHHH
Q 045044 62 TLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 62 ~l~vtGHSLGGavA~L~~~~l 82 (122)
.+.++|+||||=-|.-++...
T Consensus 61 ~~~liGSSLGGyyA~~La~~~ 81 (180)
T PRK04940 61 RPLICGVGLGGYWAERIGFLC 81 (180)
T ss_pred CcEEEEeChHHHHHHHHHHHH
Confidence 689999999999998776443
No 134
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=91.40 E-value=0.64 Score=34.39 Aligned_cols=34 Identities=24% Similarity=0.181 Sum_probs=22.0
Q ss_pred HHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHH
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
..|.+.++.-+ -.+++++||||..++.-.+.+..
T Consensus 48 ~~l~~~v~a~~-~~~vlVAHSLGc~~v~h~~~~~~ 81 (181)
T COG3545 48 ARLEKEVNAAE-GPVVLVAHSLGCATVAHWAEHIQ 81 (181)
T ss_pred HHHHHHHhccC-CCeEEEEecccHHHHHHHHHhhh
Confidence 44444444433 34999999999887766555553
No 135
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=91.03 E-value=0.37 Score=40.43 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~ 76 (122)
+...|+.....+-+-++++++|||||-+-.
T Consensus 168 LK~~iE~~~~~~G~kkVvlisHSMG~l~~l 197 (473)
T KOG2369|consen 168 LKKKIETMYKLNGGKKVVLISHSMGGLYVL 197 (473)
T ss_pred HHHHHHHHHHHcCCCceEEEecCCccHHHH
Confidence 344444444445668999999999987543
No 136
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=91.03 E-value=0.99 Score=40.29 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.9
Q ss_pred CCCCeEEEeeccchHHHHHHHHH
Q 045044 58 NLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 58 ~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
+|.-++.+.||||||-++..+..
T Consensus 552 ~~~~~V~~lGHSLGgiig~~~~~ 574 (792)
T TIGR03502 552 IDGSKVSFLGHSLGGIVGTSFIA 574 (792)
T ss_pred CCCCcEEEEecCHHHHHHHHHHH
Confidence 67889999999999999987663
No 137
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=90.83 E-value=0.81 Score=35.77 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=23.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHH
Q 045044 37 LKATR-WVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVV 75 (122)
Q Consensus 37 ~~aa~-~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA 75 (122)
-++++ .+-+++.+.|++-...+++ +-.+.||||||=++
T Consensus 113 ~~~f~~fL~~~lkP~Ie~~y~~~~~-~~~i~GhSlGGLfv 151 (264)
T COG2819 113 GDAFREFLTEQLKPFIEARYRTNSE-RTAIIGHSLGGLFV 151 (264)
T ss_pred hHHHHHHHHHhhHHHHhcccccCcc-cceeeeecchhHHH
Confidence 34444 3344566776664433333 38899999998655
No 138
>PRK03482 phosphoglycerate mutase; Provisional
Probab=90.36 E-value=0.96 Score=33.26 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+...+...++++.+.+++.+++|++| ||.+.+|++..+
T Consensus 120 Es~~~~~~Rv~~~l~~~~~~~~~~~vliVsH--g~~i~~l~~~l~ 162 (215)
T PRK03482 120 ESMQELSDRMHAALESCLELPQGSRPLLVSH--GIALGCLVSTIL 162 (215)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHHHHHHHh
Confidence 5666667777788888777777778999999 788888877666
No 139
>PRK07868 acyl-CoA synthetase; Validated
Probab=90.32 E-value=0.65 Score=41.94 Aligned_cols=20 Identities=10% Similarity=-0.051 Sum_probs=17.2
Q ss_pred CeEEEeeccchHHHHHHHHH
Q 045044 61 YTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~ 80 (122)
-++.++||||||.+|..++.
T Consensus 141 ~~v~lvG~s~GG~~a~~~aa 160 (994)
T PRK07868 141 RDVHLVGYSQGGMFCYQAAA 160 (994)
T ss_pred CceEEEEEChhHHHHHHHHH
Confidence 47999999999999977654
No 140
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=90.21 E-value=0.43 Score=40.22 Aligned_cols=36 Identities=8% Similarity=-0.039 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHh-CCCCeEEEeeccchHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDR-NLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 45 ~~~~~~l~~~~~~-~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
+++...|+-+..+ ..+-+|.++|||+||.+|.+++.
T Consensus 80 ~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~ 116 (550)
T TIGR00976 80 ADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAV 116 (550)
T ss_pred hHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhc
Confidence 3445555544443 23469999999999998877664
No 141
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=89.99 E-value=0.56 Score=38.96 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
.|++.....+.+++.+.|++.+|+.....-.+.=||||||.++=++.
T Consensus 99 ~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs 145 (446)
T cd02189 99 YGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGS 145 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHH
Confidence 46666567788999999999999998888888899999976543333
No 142
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=89.92 E-value=1.2 Score=33.13 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=23.0
Q ss_pred HHHhCCCC---eEEEeeccchHHHHHHHHHHH
Q 045044 54 LVDRNLNY---TLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 54 ~~~~~p~~---~l~vtGHSLGGavA~L~~~~l 82 (122)
.+.++|.. +|-|.|.|.||-+|.+++..+
T Consensus 12 ~L~~~p~v~~~~Igi~G~SkGaelALllAs~~ 43 (213)
T PF08840_consen 12 WLKSHPEVDPDKIGIIGISKGAELALLLASRF 43 (213)
T ss_dssp HHHCSTTB--SSEEEEEETHHHHHHHHHHHHS
T ss_pred HHHhCCCCCCCCEEEEEECHHHHHHHHHHhcC
Confidence 34455654 699999999999999988665
No 143
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=89.85 E-value=0.78 Score=37.67 Aligned_cols=41 Identities=15% Similarity=-0.041 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCC-CeEEEeeccchHHHHHHHHH
Q 045044 40 TRWVFDAKCEFLRGLVDRNLN-YTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~~p~-~~l~vtGHSLGGavA~L~~~ 80 (122)
.+.+.+++.+.|++...-..+ -+..|.|+||||-.|.-+++
T Consensus 266 ~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al 307 (411)
T PRK10439 266 WLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGL 307 (411)
T ss_pred HHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHH
Confidence 445566666766664222122 45789999999987765543
No 144
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=89.47 E-value=1.8 Score=35.90 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=37.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHH----HHHHHHHhh
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVA----LLVLIVVQN 85 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~----L~~~~l~~~ 85 (122)
+|+. ....+.+++.+.|++.+++.....=.++=||||||.++ ++.-.|+.+
T Consensus 104 ~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~ 158 (431)
T cd02188 104 SGYS-QGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDR 158 (431)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhH
Confidence 4643 46778888999999999998877878888999987643 444444443
No 145
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=89.40 E-value=0.84 Score=35.99 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchH----HHHHHHHHHHHhh
Q 045044 35 GLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGA----GVVALLVLIVVQN 85 (122)
Q Consensus 35 Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGG----avA~L~~~~l~~~ 85 (122)
|.+.+-....+++.+.|++.+|+......++.=||||| |+++.+.-.++++
T Consensus 63 G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~ 117 (328)
T cd00286 63 GHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDE 117 (328)
T ss_pred eeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHH
Confidence 44444345778888999999999888888999999998 4555555566554
No 146
>COG5023 Tubulin [Cytoskeleton]
Probab=89.14 E-value=0.33 Score=39.91 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=49.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhc-cccCCCCCCceEEEEecCCCcCCHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNL-DKFGNIKRNKIRCFAIAPTKCMSLNL 112 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~-~~~~~~~~~~v~~~tfg~P~v~~~~~ 112 (122)
+|-|.-.+.+.+.+.+.|++..+...+..=...=||+||+.++=++..|.+.. ++ +|.+.+.-|+-=|.+-.+...
T Consensus 103 ~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e---ypkK~~~tfSV~P~p~~Sd~V 179 (443)
T COG5023 103 RGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE---YPKKIKLTFSVFPAPKVSDVV 179 (443)
T ss_pred ccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh---cchhheeEEEeccCCccCcce
Confidence 55577778889999999999888776555455559999988776665554331 22 234444444444523333333
Q ss_pred HHhcc
Q 045044 113 AVRYE 117 (122)
Q Consensus 113 a~~~~ 117 (122)
.|.|+
T Consensus 180 VePYN 184 (443)
T COG5023 180 VEPYN 184 (443)
T ss_pred ecccH
Confidence 44343
No 147
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.88 E-value=2.2 Score=34.94 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccc-cCCCCCCceEEEEecCCCcCCH
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDK-FGNIKRNKIRCFAIAPTKCMSL 110 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~-~~~~~~~~v~~~tfg~P~v~~~ 110 (122)
+++++-.+.+...|+.+.++-|.-+|.|..||||.=+..=+--.|.-+..+ + ...++=+-+..|.+.--
T Consensus 168 eS~~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l----~~ki~nViLAaPDiD~D 237 (377)
T COG4782 168 ESTNYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLAIRADRPL----PAKIKNVILAAPDIDVD 237 (377)
T ss_pred hhhhhhHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHhccCCcch----hhhhhheEeeCCCCChh
Confidence 345555566777888888877888999999999976543322222222111 2 23455566677777533
No 148
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=88.62 E-value=0.71 Score=33.65 Aligned_cols=35 Identities=11% Similarity=-0.011 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhC--CCCeEEEeeccchHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRN--LNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 45 ~~~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~ 79 (122)
+++...+..+.++. ..-+|-++|.|+||.+|..++
T Consensus 80 ~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a 116 (218)
T PF01738_consen 80 ADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLA 116 (218)
T ss_dssp HHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhh
Confidence 33444444444332 246899999999999987665
No 149
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=88.59 E-value=1.3 Score=34.01 Aligned_cols=31 Identities=32% Similarity=0.294 Sum_probs=22.4
Q ss_pred HHHHhCCCCe-EEEeeccchHHHHHHHHHHHH
Q 045044 53 GLVDRNLNYT-LTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 53 ~~~~~~p~~~-l~vtGHSLGGavA~L~~~~l~ 83 (122)
=++..+|+.+ |++-|||.|+-+|.=+.+.++
T Consensus 127 filk~~~n~k~l~~gGHSaGAHLa~qav~R~r 158 (270)
T KOG4627|consen 127 FILKYTENTKVLTFGGHSAGAHLAAQAVMRQR 158 (270)
T ss_pred HHHHhcccceeEEEcccchHHHHHHHHHHHhc
Confidence 3445667754 889999999999876655543
No 150
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=88.45 E-value=1.5 Score=31.94 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+...+.+.++++.+++++-.++|++| ||.+.+|+...+
T Consensus 119 Es~~~~~~Rv~~~l~~l~~~~~~~~iliVsH--g~~i~~l~~~~~ 161 (199)
T PRK15004 119 EGFQAFSQRVERFIARLSAFQHYQNLLIVSH--QGVLSLLIARLL 161 (199)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--hHHHHHHHHHHh
Confidence 4555667777888888888888888999999 788888877665
No 151
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=88.38 E-value=1 Score=35.62 Aligned_cols=46 Identities=24% Similarity=0.136 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhC---CCCeEEEeeccchHHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDRN---LNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~---p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
+.+..+.+-+.+-|+.++..+ .--++.+.|||-||-.|--+++-..
T Consensus 94 ~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a 142 (307)
T PF07224_consen 94 KSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYA 142 (307)
T ss_pred HHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhccc
Confidence 344444444445555554332 2368999999999999987776554
No 152
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=88.27 E-value=1.6 Score=30.77 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
++...+.+.+.+.++++.+++++..|+|++| ||.+..++...+
T Consensus 115 Es~~~~~~R~~~~~~~l~~~~~~~~vlvVsH--g~~i~~l~~~~~ 157 (177)
T TIGR03162 115 ESFADFYQRVSEFLEELLKAHEGDNVLIVTH--GGVIRALLAHLL 157 (177)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCeEEEEEC--HHHHHHHHHHHh
Confidence 3555566777788888887778888999999 578877776554
No 153
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=87.79 E-value=2.3 Score=38.83 Aligned_cols=28 Identities=11% Similarity=0.023 Sum_probs=23.0
Q ss_pred CCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 58 NLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 58 ~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
.++-...+.|||+||.+|.-++..+...
T Consensus 1130 ~~~~p~~l~G~S~Gg~vA~e~A~~l~~~ 1157 (1296)
T PRK10252 1130 QPHGPYHLLGYSLGGTLAQGIAARLRAR 1157 (1296)
T ss_pred CCCCCEEEEEechhhHHHHHHHHHHHHc
Confidence 3566799999999999999888877543
No 154
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=87.78 E-value=0.74 Score=37.26 Aligned_cols=47 Identities=21% Similarity=0.156 Sum_probs=34.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHH
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALL 78 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~ 78 (122)
-..|++.......+++.+.|++.+++.....-.+.=||||||..+=+
T Consensus 60 ~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~ 106 (382)
T cd06059 60 WARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGL 106 (382)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhH
Confidence 44555555566778888999999998887766777899998764333
No 155
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=87.71 E-value=1.5 Score=36.39 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCC---eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc
Q 045044 45 DAKCEFLRGLVDRNLNY---TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC 107 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~---~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v 107 (122)
+++...|+++++++|+| .+.|+|.|.||-.+-.++..+.+...+ ...+.-+++-+..|-|-+
T Consensus 146 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~-~~~~~inLkGi~iGNg~t 210 (433)
T PLN03016 146 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYI-CCEPPINLQGYMLGNPVT 210 (433)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhccc-ccCCcccceeeEecCCCc
Confidence 45677888888888875 599999999998877777777543211 112345888999998855
No 156
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=87.66 E-value=0.8 Score=37.25 Aligned_cols=47 Identities=23% Similarity=0.181 Sum_probs=34.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
.|++.......+++.+.|++.+|+.....-.++=||||||.++=++.
T Consensus 72 ~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs 118 (379)
T cd02190 72 VGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGT 118 (379)
T ss_pred ceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHH
Confidence 45555556677888999999999887766677789999877443333
No 157
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=87.59 E-value=2.5 Score=33.35 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhCCCC---eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc
Q 045044 45 DAKCEFLRGLVDRNLNY---TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC 107 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~---~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v 107 (122)
+++...|+.+++++|+| .+.|+|-|.||--.-.++..+.+.... ...+.-+++=+.+|-|-+
T Consensus 32 ~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n~~-~~~~~inLkGi~IGNg~t 96 (319)
T PLN02213 32 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYI-CCEPPINLQGYMLGNPVT 96 (319)
T ss_pred HHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhccc-ccCCceeeeEEEeCCCCC
Confidence 56777888888888876 599999999998777777777543211 112245788888888755
No 158
>PLN02209 serine carboxypeptidase
Probab=87.55 E-value=1.7 Score=36.08 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhCCCC---eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc
Q 045044 45 DAKCEFLRGLVDRNLNY---TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC 107 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~---~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v 107 (122)
+++...|+.+++++|.| .+.|+|.|.||--+-.++..+.+...+ ...+.-+++-+.+|.|-+
T Consensus 148 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~-~~~~~inl~Gi~igng~t 212 (437)
T PLN02209 148 KKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYI-CCNPPINLQGYVLGNPIT 212 (437)
T ss_pred HHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccc-ccCCceeeeeEEecCccc
Confidence 55677888888889877 599999999998777777777543211 112345788888888754
No 159
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=87.50 E-value=0.76 Score=35.79 Aligned_cols=34 Identities=12% Similarity=0.053 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhC-CCCeEEEeeccchHHHH
Q 045044 42 WVFDAKCEFLRGLVDRN-LNYTLTFARHSLGAGVV 75 (122)
Q Consensus 42 ~~~~~~~~~l~~~~~~~-p~~~l~vtGHSLGGavA 75 (122)
.+++++....+-+.+.+ +.-+|++.|||+|.+.+
T Consensus 110 n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~t 144 (258)
T KOG1552|consen 110 NLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPT 144 (258)
T ss_pred cchhhHHHHHHHHHhhcCCCceEEEEEecCCchhh
Confidence 34556666666666677 78899999999998873
No 160
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=87.49 E-value=1 Score=33.23 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=18.6
Q ss_pred EEEeeccchHHHHHHHHHHHHhh
Q 045044 63 LTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
.-|.|.|.||++|+++..+....
T Consensus 104 dGvlGFSQGA~lAa~ll~~~~~~ 126 (212)
T PF03959_consen 104 DGVLGFSQGAALAALLLALQQRG 126 (212)
T ss_dssp SEEEEETHHHHHHHHHHHHHHHH
T ss_pred EEEEeecHHHHHHHHHHHHHHhh
Confidence 35789999999999888777543
No 161
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=87.35 E-value=0.24 Score=40.09 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=16.7
Q ss_pred CCCeEEEeeccchHHHHHHHH
Q 045044 59 LNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 59 p~~~l~vtGHSLGGavA~L~~ 79 (122)
.-.++.|.|||.|||.+....
T Consensus 239 ~~s~~aViGHSFGgAT~i~~s 259 (399)
T KOG3847|consen 239 DTSQAAVIGHSFGGATSIASS 259 (399)
T ss_pred hhhhhhheeccccchhhhhhh
Confidence 345799999999999886554
No 162
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=87.35 E-value=0.97 Score=37.41 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
+|++.....+.+++.+.|++.+++.....=.++=||||||.++=++
T Consensus 104 ~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlg 149 (434)
T cd02186 104 RGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFG 149 (434)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHH
Confidence 4666666677888999999999987766666667999986643333
No 163
>KOG3101 consensus Esterase D [General function prediction only]
Probab=87.26 E-value=0.37 Score=37.11 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhC----CCCeEEEeeccchHHHHHH
Q 045044 43 VFDAKCEFLRGLVDRN----LNYTLTFARHSLGAGVVAL 77 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~~----p~~~l~vtGHSLGGavA~L 77 (122)
+|+=+.+.|-+++... .--++-|+||||||-=|..
T Consensus 119 MYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~ 157 (283)
T KOG3101|consen 119 MYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALT 157 (283)
T ss_pred HHHHHHHHHHHHhccccccccchhcceeccccCCCceEE
Confidence 4555555666655421 2357899999999876643
No 164
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=86.51 E-value=4.5 Score=26.26 Aligned_cols=52 Identities=10% Similarity=0.137 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCeEEEeecc--chHH---------HHHHHHHHHHhhccccCCCCCCceEEEEecCC
Q 045044 49 EFLRGLVDRNLNYTLTFARHS--LGAG---------VVALLVLIVVQNLDKFGNIKRNKIRCFAIAPT 105 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHS--LGGa---------vA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P 105 (122)
..+-+.+.++|+++|.|.||+ .|.. -|.-..-.|.. .+++..+++..+||.-
T Consensus 20 ~~~a~~l~~~~~~~i~I~Ghtd~~g~~~~N~~LS~~RA~~V~~~L~~-----~gi~~~ri~~~g~G~~ 82 (104)
T TIGR02802 20 DAHAAYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQA-----KGVSASQIETVSYGEE 82 (104)
T ss_pred HHHHHHHHHCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHeEEEeeccc
Confidence 344555667899999999998 3322 12222222211 1456778999999963
No 165
>PRK13463 phosphatase PhoE; Provisional
Probab=86.25 E-value=2.2 Score=31.28 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhcccc---CCCCCCceEEEEec
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKF---GNIKRNKIRCFAIA 103 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~---~~~~~~~v~~~tfg 103 (122)
++...+...+.+.++.+.+++++-.|+|++| ||.+-++++..+-.....+ .......+.++.|.
T Consensus 121 Es~~~~~~R~~~~l~~i~~~~~~~~vlvVsH--g~~ir~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 187 (203)
T PRK13463 121 ENFEAVHKRVIEGMQLLLEKHKGESILIVSH--AAAAKLLVGHFAGIEIENVWDDPFMHSASLSIIEFE 187 (203)
T ss_pred eEHHHHHHHHHHHHHHHHHhCCCCEEEEEeC--hHHHHHHHHHHhCCCHHHHhhccCccCceEEEEEEe
Confidence 3555666667777888778888888999999 7888888776652111111 11234567777773
No 166
>PLN00220 tubulin beta chain; Provisional
Probab=86.10 E-value=1 Score=37.43 Aligned_cols=47 Identities=17% Similarity=0.092 Sum_probs=35.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 33 HNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 33 H~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
-+|++.....+.+++.+.|++.+++.....=.++=||||||.++=++
T Consensus 102 a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~g 148 (447)
T PLN00220 102 AKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMG 148 (447)
T ss_pred CceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHH
Confidence 35666666678899999999999998777777778999988743333
No 167
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=85.94 E-value=2.8 Score=36.11 Aligned_cols=38 Identities=13% Similarity=-0.020 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHHH-HHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVAL-LVLIVV 83 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L-~~~~l~ 83 (122)
.+.++|+.+.+....-+|.+.|||+||-++++ ++.+-.
T Consensus 273 ~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA 311 (560)
T TIGR01839 273 ALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQA 311 (560)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHh
Confidence 45566666666666778999999999999985 444433
No 168
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=85.64 E-value=5.1 Score=31.19 Aligned_cols=70 Identities=16% Similarity=0.025 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh---CCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCc--eEEEEecCCCcCCHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDR---NLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNK--IRCFAIAPTKCMSLNL 112 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~---~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~--v~~~tfg~P~v~~~~~ 112 (122)
..++.+.|.++.. +++..+ .++.++.+.|||-|| .|++.+..+..+. -|.-+ +.-..-|.|+.--.++
T Consensus 46 ~~a~avLD~vRAA-~~~~~~~gl~~~~~v~l~GySqGG-~Aa~~AA~l~~~Y-----ApeL~~~l~Gaa~gg~~~dl~~~ 118 (290)
T PF03583_consen 46 SEAYAVLDAVRAA-RNLPPKLGLSPSSRVALWGYSQGG-QAALWAAELAPSY-----APELNRDLVGAAAGGPPADLAAL 118 (290)
T ss_pred hHHHHHHHHHHHH-HhcccccCCCCCCCEEEEeeCccH-HHHHHHHHHhHHh-----CcccccceeEEeccCCccCHHHH
Confidence 3445555544433 222221 246789999999885 5556666775443 12234 7777777776544444
Q ss_pred HH
Q 045044 113 AV 114 (122)
Q Consensus 113 a~ 114 (122)
.+
T Consensus 119 ~~ 120 (290)
T PF03583_consen 119 LR 120 (290)
T ss_pred Hh
Confidence 44
No 169
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=85.46 E-value=0.91 Score=32.78 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=14.9
Q ss_pred HHHHHHHHhCCCCeEEEeeccchHH
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLGAG 73 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLGGa 73 (122)
+.|++.+.. .+-.++++|||||..
T Consensus 44 ~~l~~~i~~-~~~~~ilVaHSLGc~ 67 (171)
T PF06821_consen 44 QALDQAIDA-IDEPTILVAHSLGCL 67 (171)
T ss_dssp HHHHHCCHC--TTTEEEEEETHHHH
T ss_pred HHHHHHHhh-cCCCeEEEEeCHHHH
Confidence 344444443 234599999999954
No 170
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=85.23 E-value=4.6 Score=29.33 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCCeEEEeecc-----------chHHHHHHHHHHHHhhccccCCCCCCceEEEEecCC
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHS-----------LGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPT 105 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHS-----------LGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P 105 (122)
+.+.+.+.+.++|+.+|.|.||. |+-.-|.-..-.|... +++..+++.++||.-
T Consensus 87 ~L~~~a~~L~~~p~~~v~I~GhtD~~Gs~~yN~~LS~~RA~aV~~~L~~~-----Gv~~~ri~~~g~Ge~ 151 (173)
T PRK10802 87 MLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGK-----GVSADQISIVSYGKE 151 (173)
T ss_pred HHHHHHHHHHhCCCceEEEEEecCCCCChHHHHHHHHHHHHHHHHHHHHc-----CCCHHHeEEEEecCC
Confidence 34455566778899999999997 3344444333333322 466789999999963
No 171
>PTZ00335 tubulin alpha chain; Provisional
Probab=85.06 E-value=1.1 Score=37.35 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
+|++.....+.+++.+.|++.+++.....=.+.=||||||.++=++.
T Consensus 105 ~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs 151 (448)
T PTZ00335 105 RGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGS 151 (448)
T ss_pred ccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHH
Confidence 46666667788889999999999876665556679999876443333
No 172
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=84.75 E-value=2.7 Score=31.40 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC--CCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDRN--LNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+.+.+.+.+++++.++ ++-+++|++| ||.+-+|++..+
T Consensus 150 ES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsH--g~vir~l~~~~~ 194 (228)
T PRK14119 150 ESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAH--GNSIRALIKYLE 194 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeC--hHHHHHHHHHHh
Confidence 566677777778888876655 6778999999 788888887655
No 173
>PLN00222 tubulin gamma chain; Provisional
Probab=84.70 E-value=4.4 Score=33.86 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=37.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHH----HHHHHHHHhh
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVV----ALLVLIVVQN 85 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA----~L~~~~l~~~ 85 (122)
+|+. ....+.+++.+.|++.+++.....-.++=||||||.+ +.+.-.|+.+
T Consensus 106 ~Gy~-~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 106 SGYH-QGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred HhHH-HHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 4644 5677888899999999998887777777899998764 4444444443
No 174
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=84.13 E-value=3.4 Score=30.07 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----CCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDR-----NLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~-----~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+...+.+.++++.++ +++-.++|++| ||.+.+|++..+
T Consensus 117 Es~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsH--g~~ir~ll~~~l 164 (204)
T TIGR03848 117 ESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSH--GDVIKSVLADAL 164 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeC--ChHHHHHHHHHh
Confidence 34445555666666666544 36668999999 788888877665
No 175
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=83.75 E-value=1.6 Score=32.92 Aligned_cols=37 Identities=22% Similarity=0.130 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCeE-EEeeccchHHHHHHHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTL-TFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l-~vtGHSLGGavA~L~~~~l 82 (122)
+...++.=+.++||+..+ ++.|.|.|+-||+.+++..
T Consensus 87 Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~ 124 (210)
T COG2945 87 DAAAALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRR 124 (210)
T ss_pred HHHHHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhc
Confidence 345566667788999887 9999999999999887655
No 176
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.66 E-value=1.9 Score=32.61 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCC---CCeEEEeeccchHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRNL---NYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p---~~~l~vtGHSLGGavA~L~~~~ 81 (122)
.++...+.-+. +.| .-+|-++|.|+||.+|.+++-.
T Consensus 94 ~d~~a~~~~L~-~~~~~~~~~ig~~GfC~GG~~a~~~a~~ 132 (236)
T COG0412 94 ADIDAALDYLA-RQPQVDPKRIGVVGFCMGGGLALLAATR 132 (236)
T ss_pred HHHHHHHHHHH-hCCCCCCceEEEEEEcccHHHHHHhhcc
Confidence 33444444433 345 5689999999999999877643
No 177
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=83.53 E-value=1.9 Score=37.09 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhCCCC---eEEEeeccchHHHHHHHH
Q 045044 43 VFDAKCEFLRGLVDRNLNY---TLTFARHSLGAGVVALLV 79 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~~p~~---~l~vtGHSLGGavA~L~~ 79 (122)
.++++.+.++ ++.++|.. |+.|+|||.||=++.+++
T Consensus 453 ~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~ 491 (620)
T COG1506 453 DLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAA 491 (620)
T ss_pred cHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHH
Confidence 4566777777 67777743 699999999998775544
No 178
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=83.38 E-value=3.8 Score=34.38 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhCCCCe---EEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcC
Q 045044 45 DAKCEFLRGLVDRNLNYT---LTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCM 108 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~---l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~ 108 (122)
++....|++.++++|+|+ +.|+|-|.+|-.-=-++-.+.+..+. ...+.-+++-+.+|-|-+-
T Consensus 149 ~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~-~~~~~iNLkG~~IGNg~td 214 (454)
T KOG1282|consen 149 KDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKK-CCKPNINLKGYAIGNGLTD 214 (454)
T ss_pred HHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhcccc-ccCCcccceEEEecCcccC
Confidence 456678899999998774 99999999995543344444333211 0123468899999887653
No 179
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=83.37 E-value=1.2 Score=34.99 Aligned_cols=27 Identities=15% Similarity=-0.025 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCCeEEEeeccchHHH
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLGAGV 74 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLGGav 74 (122)
...++.+.+.|.--++-++|||+||.-
T Consensus 123 k~~msyL~~~Y~i~k~n~VGhSmGg~~ 149 (288)
T COG4814 123 KKAMSYLQKHYNIPKFNAVGHSMGGLG 149 (288)
T ss_pred HHHHHHHHHhcCCceeeeeeeccccHH
Confidence 345556666676668999999999863
No 180
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=83.18 E-value=3.9 Score=31.74 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=32.0
Q ss_pred cccCCCchhHhHHHHHHHHHHHHHHHHHHHHHhC---CC-CeEEEeeccchHHHHHHHHHHH
Q 045044 25 TKFDGGYVHNGLLKATRWVFDAKCEFLRGLVDRN---LN-YTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 25 ~~~~~g~vH~Gf~~aa~~~~~~~~~~l~~~~~~~---p~-~~l~vtGHSLGGavA~L~~~~l 82 (122)
.|+..+.=|.. .|+.++.+...+++.+.+.. +. .-+.=+|||||.=+=.|+....
T Consensus 53 tPy~~tfDH~~---~A~~~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~ 111 (250)
T PF07082_consen 53 TPYVVTFDHQA---IAREVWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLF 111 (250)
T ss_pred EecCCCCcHHH---HHHHHHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhc
Confidence 34455566754 44445555444554444322 22 2455699999998887776554
No 181
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=83.07 E-value=3.5 Score=33.96 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=19.7
Q ss_pred HHHhCCC---CeEEEeeccchHHHHHHHHH
Q 045044 54 LVDRNLN---YTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 54 ~~~~~p~---~~l~vtGHSLGGavA~L~~~ 80 (122)
+++..|. -+|-++|+|+||-.+.+++.
T Consensus 216 fL~slpeVD~~RIG~~GfSmGg~~a~~LaA 245 (390)
T PF12715_consen 216 FLASLPEVDPDRIGCMGFSMGGYRAWWLAA 245 (390)
T ss_dssp HHCT-TTEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred HHhcCcccCccceEEEeecccHHHHHHHHH
Confidence 3444453 58999999999999877663
No 182
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=82.96 E-value=1.9 Score=33.55 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.9
Q ss_pred CCC-eEEEeeccchHHHHHHHHHHH
Q 045044 59 LNY-TLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 59 p~~-~l~vtGHSLGGavA~L~~~~l 82 (122)
+|+ +|-+.|||-||-+|..+++..
T Consensus 88 ~D~s~l~l~GHSrGGk~Af~~al~~ 112 (259)
T PF12740_consen 88 PDFSKLALAGHSRGGKVAFAMALGN 112 (259)
T ss_pred ccccceEEeeeCCCCHHHHHHHhhh
Confidence 565 899999999999999888776
No 183
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=82.69 E-value=8.7 Score=27.76 Aligned_cols=58 Identities=12% Similarity=0.127 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEeecc-----------chHHHHHHHHHHHHhhccccCCCCCCceEEEEecC--CCcC
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHS-----------LGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAP--TKCM 108 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHS-----------LGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~--P~v~ 108 (122)
++...+.+.++++|..+|+|.||. |+---|--.+-.|... +++..++.+.+||. |-+.
T Consensus 100 ~~L~~~a~~L~~~p~~~i~V~GHTD~~Gs~~yN~~LS~rRA~aV~~~L~~~-----Gv~~~~i~~~G~G~~~Pia~ 170 (190)
T COG2885 100 ATLDELAKYLKKNPITRILVEGHTDSTGSDEYNQALSERRAEAVADYLVSQ-----GVVADRISTVGYGEEKPIAS 170 (190)
T ss_pred HHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHhHHHHHHHHHHHHHHHHHc-----CCCcccEEEEEcCcCCCCCC
Confidence 345566666778899999999993 4444454444444332 24456999999995 5543
No 184
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=82.69 E-value=3.4 Score=34.10 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=38.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHH----HHHHHHHHHhh
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGV----VALLVLIVVQN 85 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGav----A~L~~~~l~~~ 85 (122)
+|++.....+.+++.+.|++.+++.....=.++=||||||. ++.+.-.|+.+
T Consensus 102 ~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~ 157 (425)
T cd02187 102 KGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE 157 (425)
T ss_pred ccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHh
Confidence 57777667788889999999999887776666679999855 44444455444
No 185
>PTZ00010 tubulin beta chain; Provisional
Probab=82.47 E-value=4.3 Score=33.78 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=38.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHH----HHHHHHHHHhh
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGV----VALLVLIVVQN 85 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGav----A~L~~~~l~~~ 85 (122)
+|++.....+.+++.+.|++.+++.....=.++=||+|||. ++.+.-.|+.+
T Consensus 103 ~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~de 158 (445)
T PTZ00010 103 KGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREE 158 (445)
T ss_pred cchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhh
Confidence 57777677788889999999999887666667779999865 45555555544
No 186
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.29 E-value=4.2 Score=32.21 Aligned_cols=42 Identities=24% Similarity=0.161 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
.++++.+++.+...+.++=+. .-=||++.|-|||+ .++-.+.
T Consensus 86 ~~a~~aL~~aV~~~~~~lP~~-~RPkL~l~GeSLGa-~g~~~af 127 (289)
T PF10081_consen 86 REAARALFEAVYARWSTLPED-RRPKLYLYGESLGA-YGGEAAF 127 (289)
T ss_pred HHHHHHHHHHHHHHHHhCCcc-cCCeEEEeccCccc-cchhhhh
Confidence 567888888887777765222 11289999999994 4444443
No 187
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=82.07 E-value=0.82 Score=35.61 Aligned_cols=43 Identities=26% Similarity=0.157 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
-+|.+=|+.= +-..|..+...-|+--++++|||+||.+-.|+.
T Consensus 81 ~~~~DwA~~D---~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~ 123 (281)
T COG4757 81 WRYLDWARLD---FPAALAALKKALPGHPLYFVGHSFGGQALGLLG 123 (281)
T ss_pred cchhhhhhcc---hHHHHHHHHhhCCCCceEEeeccccceeecccc
Confidence 3444444433 334444444444677799999999998776654
No 188
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=82.01 E-value=5 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHH-hCCCCeEEEeeccchHHHHH
Q 045044 39 ATRWVFDAKCEFLRGLVD-RNLNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 39 aa~~~~~~~~~~l~~~~~-~~p~~~l~vtGHSLGGavA~ 76 (122)
+...+...+...++++.. ..++-.++|++| ||.+.+
T Consensus 121 s~~~~~~R~~~~~~~l~~~~~~~~~vliVsH--g~~i~~ 157 (158)
T PF00300_consen 121 SWEDFQQRVKQFLDELIAYKRPGENVLIVSH--GGFIRA 157 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSEEEEEE---HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCEEEEEec--HHHHHh
Confidence 555666667777777775 668899999999 455443
No 189
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=81.87 E-value=2.6 Score=31.81 Aligned_cols=46 Identities=13% Similarity=0.028 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
.|+.+++..+.+-+..++.+- -|--+|.|-|-|+||++|.-+++.+
T Consensus 69 ~~~~~aa~~i~~Li~~e~~~G---i~~~rI~igGfs~G~a~aL~~~~~~ 114 (206)
T KOG2112|consen 69 EGLHRAADNIANLIDNEPANG---IPSNRIGIGGFSQGGALALYSALTY 114 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHcC---CCccceeEcccCchHHHHHHHHhcc
Confidence 455555554444333333322 2556899999999999998887766
No 190
>PRK13462 acid phosphatase; Provisional
Probab=81.75 E-value=4.9 Score=29.58 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+...+.+.++.+++++++-+++|++|. |.+-++++..+
T Consensus 117 ES~~~~~~Rv~~~l~~i~~~~~~~~vliVsHg--~vir~ll~~~l 159 (203)
T PRK13462 117 ESVAQVNERADRAVALALEHMESRDVVFVSHG--HFSRAVITRWV 159 (203)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCC--HHHHHHHHHHh
Confidence 56677777888888888888888889999996 67777776655
No 191
>PTZ00387 epsilon tubulin; Provisional
Probab=81.16 E-value=3.9 Score=34.31 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHH----HHHHHHHHhh
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVV----ALLVLIVVQN 85 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA----~L~~~~l~~~ 85 (122)
.|++.......+++.+.|++.+|+.....=.++=||||||.+ +.+.-.|+++
T Consensus 104 ~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~ 159 (465)
T PTZ00387 104 VGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDE 159 (465)
T ss_pred CCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHh
Confidence 465555567778899999999998776665666799999764 4444444433
No 192
>COG3150 Predicted esterase [General function prediction only]
Probab=80.87 E-value=3.4 Score=30.62 Aligned_cols=34 Identities=18% Similarity=0.032 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
..+.|+++++++.+-++.|+|=||||=-|.=++.
T Consensus 45 a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~ 78 (191)
T COG3150 45 ALKELEKAVQELGDESPLIVGSSLGGYYATWLGF 78 (191)
T ss_pred HHHHHHHHHHHcCCCCceEEeecchHHHHHHHHH
Confidence 4456777777777667999999999998876653
No 193
>PLN00221 tubulin alpha chain; Provisional
Probab=80.61 E-value=2.2 Score=35.52 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=37.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHH----HHHHHHHhh
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVA----LLVLIVVQN 85 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~----L~~~~l~~~ 85 (122)
+|++.....+.+++.+.|++.+|+.....=.+.=||||||.++ ++.-.|+.+
T Consensus 105 ~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l~d~ 160 (450)
T PLN00221 105 RGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD 160 (450)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHHHHh
Confidence 4666666678899999999999988766666666999987644 444444443
No 194
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=80.53 E-value=4.3 Score=33.86 Aligned_cols=20 Identities=45% Similarity=0.557 Sum_probs=17.8
Q ss_pred CeEEEeeccchHHHHHHHHH
Q 045044 61 YTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~ 80 (122)
-+|++.|||-||+.+.++++
T Consensus 195 ~~vTl~G~saGa~~v~~l~~ 214 (545)
T KOG1516|consen 195 KNVTLFGHSAGAASVSLLTL 214 (545)
T ss_pred CeEEEEeechhHHHHHHHhc
Confidence 58999999999999988765
No 195
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=80.47 E-value=1.5 Score=31.96 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHh
Q 045044 39 ATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQ 84 (122)
Q Consensus 39 aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~ 84 (122)
..+.+.++..+.+++.+++. ..++.=|||||+..+-++..+.+
T Consensus 64 ~g~~~~~~~~~~ir~~le~~---d~~~i~~slgGGTGsG~~~~i~~ 106 (192)
T smart00864 64 VGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAE 106 (192)
T ss_pred HHHHHHHHHHHHHHHHhcCC---CEEEEeccCCCCccccHHHHHHH
Confidence 45666677777888877754 77777899999776666655543
No 196
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=80.12 E-value=0.59 Score=38.54 Aligned_cols=53 Identities=21% Similarity=0.200 Sum_probs=30.7
Q ss_pred chhHhHHHHHHHHHHH-------HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHH
Q 045044 31 YVHNGLLKATRWVFDA-------KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~-------~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
.||+|+.+++-.-++- ..+.+.+.+..+.--+|-++||||||=+|..+--.+.
T Consensus 113 iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~si~kISfvghSLGGLvar~AIgyly 172 (405)
T KOG4372|consen 113 IVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDYSIEKISFVGHSLGGLVARYAIGYLY 172 (405)
T ss_pred EeeeccccchhhccccceeeecccHHHHhhhhhccccceeeeeeeecCCeeeeEEEEeec
Confidence 4777777655433332 2233333332333358999999999988765543443
No 197
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=79.74 E-value=2.6 Score=34.46 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.8
Q ss_pred CCeEEEeeccchHHHHHHHH
Q 045044 60 NYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~ 79 (122)
-++|-+.|||+||..+.-++
T Consensus 158 ~~~Vgv~GhS~GG~T~m~la 177 (365)
T COG4188 158 PQRVGVLGHSFGGYTAMELA 177 (365)
T ss_pred ccceEEEecccccHHHHHhc
Confidence 57999999999999886543
No 198
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=78.90 E-value=4.4 Score=32.59 Aligned_cols=39 Identities=21% Similarity=0.058 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
+...+..+++..-.-++.++||++||-||.=++++..+.
T Consensus 99 l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Per 137 (322)
T KOG4178|consen 99 LVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPER 137 (322)
T ss_pred HHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChhh
Confidence 555666666665677999999999999998888776544
No 199
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=78.80 E-value=2.7 Score=33.48 Aligned_cols=47 Identities=15% Similarity=-0.017 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEeeccchHHHHHHHHHHH
Q 045044 36 LLKATRWVFDAKCEFLRGLVDRNL-NYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 36 f~~aa~~~~~~~~~~l~~~~~~~p-~~~l~vtGHSLGGavA~L~~~~l 82 (122)
.-...+.+.+++.+.|++-....+ ...=++.|-||||.+|..+++..
T Consensus 151 n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~ 198 (299)
T COG2382 151 NEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRH 198 (299)
T ss_pred cHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcC
Confidence 344555666777777777543332 23468899999999987776543
No 200
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=78.27 E-value=6.3 Score=29.67 Aligned_cols=43 Identities=12% Similarity=0.132 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDR--NLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~--~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+.+.+.+.+++++.+ .++-.|+|++| ||.+.+++...+
T Consensus 137 ES~~~~~~Rv~~~l~~li~~~~~~~~~vliVsH--G~vir~ll~~l~ 181 (236)
T PTZ00123 137 ECLKDTVERVLPYWEDHIAPDILAGKKVLVAAH--GNSLRALVKYLD 181 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--HHHHHHHHHHHh
Confidence 56666777777777775432 35678999999 889998888666
No 201
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=78.00 E-value=6.2 Score=31.58 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccC--CCCCCceEEEEe
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFG--NIKRNKIRCFAI 102 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~--~~~~~~v~~~tf 102 (122)
+++..+.+.+.+.++++.+++++-.++|++| ||.+..++...+-.....+. .++...+.++-|
T Consensus 290 Es~~~~~~Rv~~~l~~l~~~~~~~~vlvVtH--g~~ir~ll~~~l~~~~~~~~~~~~~~~~~s~l~~ 354 (372)
T PRK07238 290 ESFDAVARRVRRARDRLIAEYPGATVLVVSH--VTPIKTLLRLALDAGPGVLYRLHLDLASLSIAEF 354 (372)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCeEEEEEC--hHHHHHHHHHHhCCCHHHhhhcccCCceEEEEEE
Confidence 3555666777778888877778888999999 68888888766632111110 123455666666
No 202
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=77.87 E-value=4.9 Score=31.93 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=25.1
Q ss_pred HHHHHHHHHhC-CCCeEEEeeccchHHHHHHHHHHH
Q 045044 48 CEFLRGLVDRN-LNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 48 ~~~l~~~~~~~-p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
...+.+++++. =+-++++.|||.|+..|.-++...
T Consensus 90 ~~~~~~ll~~l~i~~~~i~~gHSrGcenal~la~~~ 125 (297)
T PF06342_consen 90 QNFVNALLDELGIKGKLIFLGHSRGCENALQLAVTH 125 (297)
T ss_pred HHHHHHHHHHcCCCCceEEEEeccchHHHHHHHhcC
Confidence 34555555543 247899999999999998777554
No 203
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.82 E-value=4.6 Score=32.28 Aligned_cols=43 Identities=14% Similarity=0.045 Sum_probs=31.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEeeccchHHHHHHHHH
Q 045044 33 HNGLLKATRWVFDAKCEFLRGLVDRN--LNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 33 H~Gf~~aa~~~~~~~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~~ 80 (122)
|+|.-+..- +.+.+.++..+| ..-+|.+||-|=||.+|..++-
T Consensus 119 ~~g~ddVgf-----lr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac 163 (312)
T COG3509 119 RRGVDDVGF-----LRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLAC 163 (312)
T ss_pred cCCccHHHH-----HHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHh
Confidence 666655332 566677777776 3469999999999999986653
No 204
>PLN02633 palmitoyl protein thioesterase family protein
Probab=76.02 E-value=6.9 Score=31.39 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=38.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcC
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCM 108 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~ 108 (122)
..+||+.-...-.+.+.+.|++ ..+.++ .+-+.|||-||-++-=+.-.. ... ++--..|+||.|.-|
T Consensus 67 ~~~s~~~~~~~Qve~vce~l~~-~~~l~~-G~naIGfSQGGlflRa~ierc-~~~-------p~V~nlISlggph~G 133 (314)
T PLN02633 67 VGDSWLMPLTQQAEIACEKVKQ-MKELSQ-GYNIVGRSQGNLVARGLIEFC-DGG-------PPVYNYISLAGPHAG 133 (314)
T ss_pred ccccceeCHHHHHHHHHHHHhh-chhhhC-cEEEEEEccchHHHHHHHHHC-CCC-------CCcceEEEecCCCCC
Confidence 5667765544444444555555 333343 488899999998876433211 110 134557888876554
No 205
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=75.76 E-value=8.5 Score=30.37 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhc
Q 045044 52 RGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRY 116 (122)
Q Consensus 52 ~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~ 116 (122)
-.++.+++..++++.||+.|++++. -++.+.... .+..-|-+=.|-+++--|.++.+..
T Consensus 184 ~~~~~~~~~~~ivlIg~G~gA~~~~---~~la~~~~~---~~daLV~I~a~~p~~~~n~~l~~~l 242 (310)
T PF12048_consen 184 IAFAQQQGGKNIVLIGHGTGAGWAA---RYLAEKPPP---MPDALVLINAYWPQPDRNPALAEQL 242 (310)
T ss_pred HHHHHhcCCceEEEEEeChhHHHHH---HHHhcCCCc---ccCeEEEEeCCCCcchhhhhHHHHh
Confidence 3345567877899999999998663 334333210 0112233333444444556666654
No 206
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.08 E-value=14 Score=32.43 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=30.4
Q ss_pred CCeEEEeeccchHHHHHHHHHHHHh-hccccCCCCCCceEEEEecCCCcCCH
Q 045044 60 NYTLTFARHSLGAGVVALLVLIVVQ-NLDKFGNIKRNKIRCFAIAPTKCMSL 110 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~~~l~~-~~~~~~~~~~~~v~~~tfg~P~v~~~ 110 (122)
+--++..|||+||-+|-.+-+.-.. ..+.+.+.-.....|+=|+.|.-|++
T Consensus 525 ~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~PHrGS~ 576 (697)
T KOG2029|consen 525 DRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVPHRGSR 576 (697)
T ss_pred CCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecCCCCCc
Confidence 4559999999999666544433321 11222222234455888888877765
No 207
>COG0400 Predicted esterase [General function prediction only]
Probab=74.66 E-value=6.7 Score=29.38 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhC--CCCeEEEeeccchHHHHH
Q 045044 47 KCEFLRGLVDRN--LNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 47 ~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~ 76 (122)
+.+.|+.+.+++ +.-++++.|.|-||.+|+
T Consensus 83 ~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial 114 (207)
T COG0400 83 LAEFLEELAEEYGIDSSRIILIGFSQGANIAL 114 (207)
T ss_pred HHHHHHHHHHHhCCChhheEEEecChHHHHHH
Confidence 456666666665 346999999999999985
No 208
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=74.08 E-value=6.4 Score=32.30 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=21.0
Q ss_pred HHHHHHHHhC--CCCeEEEeeccchHHHHHHHHH
Q 045044 49 EFLRGLVDRN--LNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 49 ~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~~ 80 (122)
+-+++.++++ ..-+|++.|||-||..+.++..
T Consensus 162 ~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~ 195 (493)
T cd00312 162 KWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLL 195 (493)
T ss_pred HHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhh
Confidence 3344444443 2258999999999987766543
No 209
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=74.02 E-value=2 Score=33.37 Aligned_cols=25 Identities=20% Similarity=0.114 Sum_probs=19.8
Q ss_pred CCCeEEEeeccchHHHHHHHHHHHH
Q 045044 59 LNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 59 p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
...+|++-|-|||||+|.-++..-+
T Consensus 147 dktkivlfGrSlGGAvai~lask~~ 171 (300)
T KOG4391|consen 147 DKTKIVLFGRSLGGAVAIHLASKNS 171 (300)
T ss_pred CcceEEEEecccCCeeEEEeeccch
Confidence 3568999999999999976665443
No 210
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=73.96 E-value=9.6 Score=28.47 Aligned_cols=43 Identities=16% Similarity=0.148 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDR--NLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~--~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
++...+.+.+.+.+++++.+ +++-+++|+.| ||.+-+|++..+
T Consensus 149 Es~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsH--ggvir~ll~~~l 193 (227)
T PRK14118 149 ENLKVTLERVLPFWEDQIAPALLSGKRVLVAAH--GNSLRALAKHIE 193 (227)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeC--HHHHHHHHHHHh
Confidence 44555666677777776543 46778999999 888888887665
No 211
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=72.32 E-value=11 Score=27.20 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhcccc--CCCCCCceEEEEecCC
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKF--GNIKRNKIRCFAIAPT 105 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~--~~~~~~~v~~~tfg~P 105 (122)
.+++..+...+.+.++++..++++-.++|+.| ||.+-+|+...+-...... -..+...+.++.|-.-
T Consensus 122 gEs~~~~~~R~~~~~~~~~~~~~~~~vlvVsH--g~~ir~l~~~~~~~~~~~~~~~~~~~~si~~l~~~~~ 190 (208)
T COG0406 122 GESLADVSKRVVAALAELLRSPPGNNVLVVSH--GGVIRALLAYLLGLDLEELWRLRLDNASVTVLEFDDG 190 (208)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEC--hHHHHHHHHHhcCCChhhHHhcCCCCceEEEEEeeCC
Confidence 45677778888889999888877668999999 6777666655552111000 0133456666666643
No 212
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=72.10 E-value=11 Score=28.08 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-h-CCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVD-R-NLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~-~-~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+.+.+.+.+++++. . +++-+++|+.| ||.+-+|++..+
T Consensus 150 Es~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsH--g~vir~ll~~~~ 194 (228)
T PRK14116 150 ENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAH--GNSLRALTKYIE 194 (228)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcC--hHHHHHHHHHHh
Confidence 4555666677777777653 3 46778999999 889998888665
No 213
>PRK01112 phosphoglyceromutase; Provisional
Probab=71.78 E-value=11 Score=28.28 Aligned_cols=41 Identities=7% Similarity=0.076 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHh--CCCCeEEEeeccchHHHHHHHHHHH
Q 045044 40 TRWVFDAKCEFLRGLVDR--NLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~--~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+..+.+.+.+.+++.+.+ .++-.++|+.| ||.+.++++..+
T Consensus 151 ~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsH--g~vir~l~~~ll 193 (228)
T PRK01112 151 LEDTGQRTLPYFQNRILPHLQQGKNVFVSAH--GNSLRSLIMDLE 193 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEEeC--HHHHHHHHHHHh
Confidence 334555566666655433 25678999999 899999988766
No 214
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=71.76 E-value=12 Score=30.14 Aligned_cols=43 Identities=14% Similarity=0.291 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CeEEEeeccchHHHHHHHHHHHHhh
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLN-YTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~-~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
++|.+|++++. ++..+-| -++.|.|=|-||-+|.-++..+.+.
T Consensus 147 ~~Al~w~~~~~------~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~ 190 (336)
T KOG1515|consen 147 WAALKWVLKNS------WLKLGADPSRVFLAGDSAGGNIAHVVAQRAADE 190 (336)
T ss_pred HHHHHHHHHhH------HHHhCCCcccEEEEccCccHHHHHHHHHHHhhc
Confidence 56667777664 3333322 4699999999999999999988754
No 215
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=71.25 E-value=22 Score=29.21 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHh
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQ 84 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~ 84 (122)
.+..+.+.++...-+|++.|-|-||-+|.-+...|++
T Consensus 182 v~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~LqyL~~ 218 (374)
T PF10340_consen 182 VATYDYLVESEGNKNIILMGDSAGGNLALSFLQYLKK 218 (374)
T ss_pred HHHHHHHHhccCCCeEEEEecCccHHHHHHHHHHHhh
Confidence 3444555534345689999999999998777667765
No 216
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=71.17 E-value=7.7 Score=24.71 Aligned_cols=53 Identities=11% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCeEEEeeccchHHHH-----------HHHHHHHHhhccccCCCCCCceEEEEecCCCc
Q 045044 50 FLRGLVDRNLNYTLTFARHSLGAGVV-----------ALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC 107 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHSLGGavA-----------~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v 107 (122)
.+...+..+|+++|.|.||+=..+.. .-..-.|.+. +.+..++.+..+|...-
T Consensus 23 ~~~~~l~~~~~~~v~v~g~a~~~g~~~~n~~Ls~~RA~~v~~~L~~~-----g~~~~~i~~~~~G~~~~ 86 (106)
T cd07185 23 KLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSK-----GVDASRITAVGYGESRP 86 (106)
T ss_pred HHHHHHHHCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHc-----CCCHHHEEEEEeCCcCc
Confidence 34556667899999999999654211 1111112111 24456899999996443
No 217
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.75 E-value=36 Score=29.56 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=34.9
Q ss_pred CeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhcc
Q 045044 61 YTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYE 117 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~ 117 (122)
.-|+++|.|||+-+--=.-..|.+ .++++ -.-.+|-||.|-+.+.+.-.+.+
T Consensus 447 RPVTLVGFSLGARvIf~CL~~Lak-kke~~----iIEnViL~GaPv~~k~~~w~k~r 498 (633)
T KOG2385|consen 447 RPVTLVGFSLGARVIFECLLELAK-KKEVG----IIENVILFGAPVPTKAKLWLKAR 498 (633)
T ss_pred CceeEeeeccchHHHHHHHHHHhh-ccccc----ceeeeeeccCCccCCHHHHHHHH
Confidence 349999999998776534445544 23332 23358999999999887655533
No 218
>PRK01295 phosphoglyceromutase; Provisional
Probab=69.73 E-value=14 Score=27.21 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHH-HHHHHhC-CCCeEEEeeccchHHHHHHHHHHH
Q 045044 39 ATRWVFDAKCEFL-RGLVDRN-LNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 39 aa~~~~~~~~~~l-~~~~~~~-p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
++..+...+.+.+ +.++++. ++-+++|++| ||.+.+++...+
T Consensus 127 S~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtH--g~~ir~l~~~~l 170 (206)
T PRK01295 127 SLKDTGARVLPYYLQEILPRVLRGERVLVAAH--GNSLRALVMVLD 170 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCeEEEEcC--hHHHHHHHHHHh
Confidence 3444455555543 3444443 5678999999 788888887665
No 219
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=69.33 E-value=15 Score=27.96 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVDR--NLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~--~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+.+.+.+.+++++.+ +++-.++|+.| ||.+.++++..+
T Consensus 149 ES~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsH--g~vir~l~~~l~ 193 (245)
T TIGR01258 149 ESLKDTIARVLPYWNDEIAPDLLSGKRVLIVAH--GNSLRALVKHLE 193 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhcCCCEEEEEcC--hHHHHHHHHHHH
Confidence 45556666677777776533 46778999999 889998887666
No 220
>PF03283 PAE: Pectinacetylesterase
Probab=68.73 E-value=21 Score=28.89 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=30.4
Q ss_pred HHHHHHHHHHh-CCC-CeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEec
Q 045044 47 KCEFLRGLVDR-NLN-YTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIA 103 (122)
Q Consensus 47 ~~~~l~~~~~~-~p~-~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg 103 (122)
+...|+.++++ .++ -+|+++|-|-||-=+.+-+-.++...+ +..+|+++.-+
T Consensus 140 ~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d~~~~~lp-----~~~~v~~~~Ds 193 (361)
T PF03283_consen 140 LRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHADYVRDRLP-----SSVKVKCLSDS 193 (361)
T ss_pred HHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHHHHHHHhc-----cCceEEEeccc
Confidence 44455555554 444 479999999996655555556654421 12455555443
No 221
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=68.14 E-value=28 Score=28.56 Aligned_cols=53 Identities=15% Similarity=-0.020 Sum_probs=39.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDRN-LNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~~-p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
-|.| .--+..+.++|.++.+=+++.| |+-+|..-|.|=|+=.|-.++-|++..
T Consensus 93 ~~~g-smFg~gL~~nI~~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagmir~v 146 (423)
T COG3673 93 LSGG-SMFGQGLVQNIREAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGMIRHV 146 (423)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeeccchhHHHHHHHHHHHHh
Confidence 4555 1223345566777776666655 899999999999999999999999754
No 222
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=68.12 E-value=18 Score=24.49 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhcccc--CCCCCCceEEEEecCC
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKF--GNIKRNKIRCFAIAPT 105 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~--~~~~~~~v~~~tfg~P 105 (122)
+.+.++++.+++++-.++|+|| |+.+..++...+....... ..++...+..+.|-.+
T Consensus 86 ~~~~~~~l~~~~~~~~iliV~H--~~~i~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~ 144 (153)
T cd07067 86 VLPALEELIAPHDGKNVLIVSH--GGVLRALLAYLLGLSDEDILRLNLPNGSISVLELDEN 144 (153)
T ss_pred HHHHHHHHHHhCCCCeEEEEeC--hHHHHHHHHHHhCCCHHHHHhcCCCCceEEEEEEeCC
Confidence 5566666666666778999999 6788877776653221111 1234456667766543
No 223
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=67.98 E-value=17 Score=27.64 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHH-h-CCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLVD-R-NLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~-~-~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+...+.+.+++++. . +++-.++|+.| ||.+.+++...+
T Consensus 149 ES~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVtH--ggvir~l~~~ll 193 (247)
T PRK14115 149 ESLKDTIARVLPYWNETIAPQLKSGKRVLIAAH--GNSLRALVKYLD 193 (247)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeC--hHHHHHHHHHHh
Confidence 4555666667777776543 2 46678999999 889998887666
No 224
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=67.92 E-value=9.3 Score=30.76 Aligned_cols=49 Identities=12% Similarity=0.025 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC--CeEEEeeccchHHHHHHHHHHHHhh
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLN--YTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~--~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
++..+.+.++..+.|++.++.... ...++.=|||||+.++=++..+.+.
T Consensus 72 ~~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~ 122 (349)
T cd02202 72 RELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKE 122 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHH
Confidence 345566667777778887876553 8899999999999877666655443
No 225
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=67.43 E-value=5 Score=32.75 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHHHHhCC--CCeEEEeeccchHHHHHHHH
Q 045044 50 FLRGLVDRNL--NYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 50 ~l~~~~~~~p--~~~l~vtGHSLGGavA~L~~ 79 (122)
=+++-++.+- --+|+|.|||-||+.+.++.
T Consensus 195 WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l 226 (535)
T PF00135_consen 195 WVQDNIAAFGGDPDNVTLFGQSAGAASVSLLL 226 (535)
T ss_dssp HHHHHGGGGTEEEEEEEEEEETHHHHHHHHHH
T ss_pred HHHhhhhhcccCCcceeeeeecccccccceee
Confidence 3444444442 25899999999988776543
No 226
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=65.96 E-value=15 Score=30.45 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=31.7
Q ss_pred ccccCCCchhHhHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEeeccchHHHHHHHH
Q 045044 24 QTKFDGGYVHNGLLKATRWVFDAKCEFLRGLVDRNLN-YTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 24 ~~~~~~g~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~-~~l~vtGHSLGGavA~L~~ 79 (122)
..|..+.+=--|++.|-- +.+.+....+. +....+ -+++..|||-||=+|.|++
T Consensus 148 l~P~n~EYQN~GIMqAiD-~INAl~~l~k~-~~~~~~~lp~I~~G~s~G~yla~l~~ 202 (403)
T PF11144_consen 148 LIPPNGEYQNFGIMQAID-IINALLDLKKI-FPKNGGGLPKIYIGSSHGGYLAHLCA 202 (403)
T ss_pred ecCCchhhhhhHHHHHHH-HHHHHHHHHHh-hhcccCCCcEEEEecCcHHHHHHHHH
Confidence 344445555567766543 22322222222 223333 6899999999999998876
No 227
>PF13173 AAA_14: AAA domain
Probab=65.73 E-value=7.5 Score=26.07 Aligned_cols=27 Identities=22% Similarity=0.096 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAG 73 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGa 73 (122)
..+.++.+.+..+++++++||.|.+..
T Consensus 76 ~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 76 WEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred HHHHHHHHHHhccCceEEEEccchHHH
Confidence 456777777777899999999998854
No 228
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=64.31 E-value=43 Score=22.82 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=29.2
Q ss_pred HHHHHHHhCCCCeEEEeeccc--h-------------HHHHHHHHHHHHhhccccCCCCCCceEEEEecC
Q 045044 50 FLRGLVDRNLNYTLTFARHSL--G-------------AGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAP 104 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHSL--G-------------GavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~ 104 (122)
.+-+.+..+| .+|.|.||.= | ..-|.-..-.|... +++..++++.+||.
T Consensus 51 ~ia~~l~~~~-~~i~I~GhTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~-----Gi~~~ri~~~g~G~ 114 (137)
T TIGR03350 51 RIAKALAAVP-GRITVVGHTDNVPIRTSRFPSNWHLSEARAKAVADVLAQG-----GVPAGRVRAEGRGD 114 (137)
T ss_pred HHHHHHHhCC-CeEEEEEecCCCCCccCCcccHHHHHHHHHHHHHHHHHHc-----CCCHHHEEEEEECC
Confidence 4444455567 7899999982 2 22233333333222 35567899999995
No 229
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=64.17 E-value=21 Score=27.60 Aligned_cols=41 Identities=12% Similarity=-0.030 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhC-CCCeEEEeeccchHHHHHHHHHHHH
Q 045044 43 VFDAKCEFLRGLVDRN-LNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~~-p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
+-+.+....+.+.+.+ |+.+|.+.|-|=|+..|--++-++.
T Consensus 73 ~~~~I~~ay~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~i~ 114 (277)
T PF09994_consen 73 IEARIRDAYRFLSKNYEPGDRIYLFGFSRGAYTARAFANMID 114 (277)
T ss_pred hHHHHHHHHHHHHhccCCcceEEEEecCccHHHHHHHHHHHh
Confidence 3344555555555444 7889999999999999999998884
No 230
>PLN02606 palmitoyl-protein thioesterase
Probab=63.71 E-value=18 Score=28.98 Aligned_cols=60 Identities=10% Similarity=-0.030 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHH--hCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCC
Q 045044 41 RWVFDAKCEFLRGLVD--RNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMS 109 (122)
Q Consensus 41 ~~~~~~~~~~l~~~~~--~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~ 109 (122)
..+++|+....+++.+ +.++ .+-+.|+|-||-++-=+.-.. .. .++--..|+||.|.-|-
T Consensus 74 ~~~~~Qv~~vce~l~~~~~L~~-G~naIGfSQGglflRa~ierc-~~-------~p~V~nlISlggph~Gv 135 (306)
T PLN02606 74 MPLRQQASIACEKIKQMKELSE-GYNIVAESQGNLVARGLIEFC-DN-------APPVINYVSLGGPHAGV 135 (306)
T ss_pred cCHHHHHHHHHHHHhcchhhcC-ceEEEEEcchhHHHHHHHHHC-CC-------CCCcceEEEecCCcCCc
Confidence 3444555444444432 2332 478899999998776332111 11 02345678888876653
No 231
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=63.24 E-value=22 Score=27.16 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHH-HH-hCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGL-VD-RNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~-~~-~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+++..+.+.+.+.++++ ++ .+++-+++|++| ||.+-++++..+
T Consensus 151 ES~~~~~~Rv~~~l~~~~~~~~~~~~~iliVsH--ggvir~l~~~~~ 195 (249)
T PRK14120 151 ECLKDVVARFLPYWEDDIVPDLKAGKTVLIAAH--GNSLRALVKHLD 195 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCCEEEEEeC--HHHHHHHHHHHh
Confidence 45556666677777663 33 346678999999 788888888665
No 232
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=62.79 E-value=38 Score=26.68 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=22.2
Q ss_pred eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcC
Q 045044 62 TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCM 108 (122)
Q Consensus 62 ~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~ 108 (122)
.+-+.|+|-||-+.--+.-.. .. ++--..|++|.|--|
T Consensus 81 G~~~IGfSQGgl~lRa~vq~c-~~--------~~V~nlISlggph~G 118 (279)
T PF02089_consen 81 GFNAIGFSQGGLFLRAYVQRC-ND--------PPVHNLISLGGPHMG 118 (279)
T ss_dssp -EEEEEETCHHHHHHHHHHH--TS--------S-EEEEEEES--TT-
T ss_pred ceeeeeeccccHHHHHHHHHC-CC--------CCceeEEEecCcccc
Confidence 688999999998776433222 11 245668899887654
No 233
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.42 E-value=11 Score=29.79 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.5
Q ss_pred CCCeEEEeeccchHHH
Q 045044 59 LNYTLTFARHSLGAGV 74 (122)
Q Consensus 59 p~~~l~vtGHSLGGav 74 (122)
.+-||++.|||-|+=+
T Consensus 108 k~~ki~iiGHSiGaYm 123 (301)
T KOG3975|consen 108 KDRKIYIIGHSIGAYM 123 (301)
T ss_pred CCCEEEEEecchhHHH
Confidence 4789999999999654
No 234
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.70 E-value=8.4 Score=34.28 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=15.6
Q ss_pred HHHhCCCCe--EEEeeccchHH
Q 045044 54 LVDRNLNYT--LTFARHSLGAG 73 (122)
Q Consensus 54 ~~~~~p~~~--l~vtGHSLGGa 73 (122)
+...+|++. |-|.|||||--
T Consensus 408 f~~rnPef~G~Vsi~gHSLGSv 429 (741)
T KOG2308|consen 408 FKDRNPEFNGKVSIAGHSLGSV 429 (741)
T ss_pred HHhcChhhcCceeeccCCCCce
Confidence 445678876 99999999943
No 235
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=61.52 E-value=39 Score=23.38 Aligned_cols=37 Identities=16% Similarity=0.055 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH
Q 045044 44 FDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~ 80 (122)
++++.+.|+++-+.-+-..|++...|.||.++....+
T Consensus 13 ~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i 49 (161)
T cd00394 13 ADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNI 49 (161)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHH
Confidence 4556667777654433466888899999988776543
No 236
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=61.46 E-value=11 Score=30.11 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhC----CCCeEEEeeccchHHHH
Q 045044 45 DAKCEFLRGLVDRN----LNYTLTFARHSLGAGVV 75 (122)
Q Consensus 45 ~~~~~~l~~~~~~~----p~~~l~vtGHSLGGavA 75 (122)
+++...|+-+.... ..-+|++.|||=|-.-.
T Consensus 88 ~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdv 122 (303)
T PF08538_consen 88 EEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDV 122 (303)
T ss_dssp HHHHHHHHHHHHHS------S-EEEEEECCHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEecCCCcHHH
Confidence 34566666665553 44689999999997754
No 237
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=61.22 E-value=26 Score=26.24 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HhC-CCCeEEEeeccchHHHHHHHHHHH
Q 045044 38 KATRWVFDAKCEFLRGLV-DRN-LNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~-~~~-p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
++...+++.+.+.+++++ .++ ++-.++|+.| ||.+-+|++..+
T Consensus 150 Es~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsH--g~~ir~ll~~~l 194 (230)
T PRK14117 150 ENLKVTLERALPFWEDKIAPALKDGKNVFVGAH--GNSIRALVKHIK 194 (230)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccCCCEEEEEeC--hHHHHHHHHHHh
Confidence 456667777778887765 333 4567999999 788888887665
No 238
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=60.73 E-value=4.8 Score=30.34 Aligned_cols=15 Identities=27% Similarity=0.193 Sum_probs=12.4
Q ss_pred CeEEEeeccchHHHH
Q 045044 61 YTLTFARHSLGAGVV 75 (122)
Q Consensus 61 ~~l~vtGHSLGGavA 75 (122)
..|+|-|||||.+=.
T Consensus 235 ~~I~i~GhSl~~~D~ 249 (270)
T PF14253_consen 235 DEIIIYGHSLGEVDY 249 (270)
T ss_pred CEEEEEeCCCchhhH
Confidence 679999999997633
No 239
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=60.70 E-value=15 Score=24.86 Aligned_cols=63 Identities=13% Similarity=0.163 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHH-HhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc
Q 045044 39 ATRWVFDAKCEFLRGLV-DRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC 107 (122)
Q Consensus 39 aa~~~~~~~~~~l~~~~-~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v 107 (122)
+-+.+++...+.++... +...+|.+.-.|-.|=+-|=.|+- . .++..++..+|-=|+.|-||+
T Consensus 43 ~l~kVy~~F~eLVe~~~G~~LtdYnLRrIGSdLE~~iR~LLq-----~-GeisYNl~~RVlNySMGlPr~ 106 (108)
T PF10664_consen 43 ALQKVYRKFDELVESYAGEDLTDYNLRRIGSDLEHFIRSLLQ-----A-GEISYNLDSRVLNYSMGLPRV 106 (108)
T ss_pred HHHHHHHHHHHHHHhhcCCCchhhhHHHhccHHHHHHHHHHH-----C-CceeeCCCcceeccccCCCCC
Confidence 33445555444444433 234689999999999888776652 2 344556678999999999987
No 240
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=60.62 E-value=37 Score=28.12 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=20.1
Q ss_pred CeEEEeeccchHHHHHHHHHHHHhh
Q 045044 61 YTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
-++.+.|.++||-.+..++..+...
T Consensus 168 ~~v~l~GvCqgG~~~laa~Al~a~~ 192 (406)
T TIGR01849 168 PDIHVIAVCQPAVPVLAAVALMAEN 192 (406)
T ss_pred CCCcEEEEchhhHHHHHHHHHHHhc
Confidence 3499999999999988777777554
No 241
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=60.07 E-value=18 Score=26.60 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccc----hHHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSL----GAGVVALLVLIVV 83 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSL----GGavA~L~~~~l~ 83 (122)
..+.|.+++++.. +.++++|||. |..+|..++..|-
T Consensus 96 ~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarLg 135 (202)
T cd01714 96 TAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELLG 135 (202)
T ss_pred HHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHhC
Confidence 4456666665533 7999999999 8899999988873
No 242
>COG0627 Predicted esterase [General function prediction only]
Probab=59.30 E-value=13 Score=29.62 Aligned_cols=33 Identities=18% Similarity=0.010 Sum_probs=21.1
Q ss_pred HHHHHHH-HHHhCC-C---CeEEEeeccchHHHHHHHH
Q 045044 47 KCEFLRG-LVDRNL-N---YTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 47 ~~~~l~~-~~~~~p-~---~~l~vtGHSLGGavA~L~~ 79 (122)
+.+.|-. +.+.+| + -+--|+||||||.=|..++
T Consensus 133 l~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA 170 (316)
T COG0627 133 LTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLA 170 (316)
T ss_pred HHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhh
Confidence 4445553 333445 2 2688999999998776654
No 243
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=58.20 E-value=15 Score=30.15 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~ 76 (122)
+...+.++.++ -++..++||||||- +|+
T Consensus 272 m~r~a~~iA~~-~g~~~IaTGhslgq-vaS 299 (381)
T PRK08384 272 MVKHADRIAKE-FGAKGIVMGDSLGQ-VAS 299 (381)
T ss_pred HHHHHHHHHHH-cCCCEEEEcccchh-HHH
Confidence 34455555555 47899999999985 444
No 244
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=57.97 E-value=12 Score=29.73 Aligned_cols=13 Identities=38% Similarity=0.255 Sum_probs=10.0
Q ss_pred CCeEEEeeccchH
Q 045044 60 NYTLTFARHSLGA 72 (122)
Q Consensus 60 ~~~l~vtGHSLGG 72 (122)
.....+.|||||=
T Consensus 84 ~~p~~~aGHSlGE 96 (310)
T COG0331 84 VKPDFVAGHSLGE 96 (310)
T ss_pred CCCceeecccHhH
Confidence 3445999999993
No 245
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=57.29 E-value=18 Score=24.05 Aligned_cols=28 Identities=7% Similarity=-0.022 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAG 73 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGa 73 (122)
.....|+++++.+|+.+.+++|-|=-.=
T Consensus 50 ~K~~~i~~i~~~fP~~kfiLIGDsgq~D 77 (100)
T PF09949_consen 50 HKRDNIERILRDFPERKFILIGDSGQHD 77 (100)
T ss_pred HHHHHHHHHHHHCCCCcEEEEeeCCCcC
Confidence 4567888899999999999999995444
No 246
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=56.61 E-value=47 Score=24.81 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
+...++...++...-+++++|-|.|+-|.-.+.-.|
T Consensus 54 l~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrL 89 (192)
T PF06057_consen 54 LARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRL 89 (192)
T ss_pred HHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhC
Confidence 444555555555677999999999998765544333
No 247
>KOG3734 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=56.28 E-value=27 Score=27.49 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccch
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLG 71 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLG 71 (122)
++.....+.+...++++++++|+-.|+|++|..+
T Consensus 172 es~e~~~~R~~~~~k~i~~k~~~~~lLIV~H~~s 205 (272)
T KOG3734|consen 172 ESLEDCNDRIQKVFKAIADKYPNENLLIVAHGSS 205 (272)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCceEEEeccch
Confidence 5666677888999999999999999999999654
No 248
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=56.16 E-value=38 Score=27.50 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhC---CCCeEEEeeccchHHHHHH
Q 045044 47 KCEFLRGLVDRN---LNYTLTFARHSLGAGVVAL 77 (122)
Q Consensus 47 ~~~~l~~~~~~~---p~~~l~vtGHSLGGavA~L 77 (122)
+...++.+..++ ++-++++.|=|.||++|+-
T Consensus 96 ~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw 129 (434)
T PF05577_consen 96 LAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAW 129 (434)
T ss_dssp HHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHH
Confidence 444444444333 6678999999999998764
No 249
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=55.18 E-value=7.7 Score=30.51 Aligned_cols=35 Identities=20% Similarity=0.155 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
...|+-.+..+.--+|++.|||+=|+++.+++...
T Consensus 141 ~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~ 175 (276)
T KOG1578|consen 141 GAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSL 175 (276)
T ss_pred cchHHHHHHHhccceEEEeccccCCchhhcccccc
Confidence 35666666666777999999999999999887544
No 250
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=55.15 E-value=18 Score=27.76 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhC-CCCeEEEeeccchHHHHHHHHH
Q 045044 44 FDAKCEFLRGLVDRN-LNYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~-p~~~l~vtGHSLGGavA~L~~~ 80 (122)
+++..+.|++.+.++ |-.. +.|.|-|+++|++++-
T Consensus 88 ~eesl~yl~~~i~enGPFDG--llGFSQGA~laa~l~~ 123 (230)
T KOG2551|consen 88 FEESLEYLEDYIKENGPFDG--LLGFSQGAALAALLAG 123 (230)
T ss_pred hHHHHHHHHHHHHHhCCCcc--ccccchhHHHHHHhhc
Confidence 344566777777666 5344 4599999999998876
No 251
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=55.02 E-value=20 Score=27.02 Aligned_cols=53 Identities=11% Similarity=0.156 Sum_probs=31.0
Q ss_pred HHHHHHHhCCCCeEEEeecc--chHHHHHHHHHHHHhhcc-----cc--CCCCCCceEEEEecCC
Q 045044 50 FLRGLVDRNLNYTLTFARHS--LGAGVVALLVLIVVQNLD-----KF--GNIKRNKIRCFAIAPT 105 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHS--LGGavA~L~~~~l~~~~~-----~~--~~~~~~~v~~~tfg~P 105 (122)
.+-+.+.++|+.+|.|.||. -|..- --+.|...+- -| .+++..+++...||.-
T Consensus 133 ~ia~~L~~~p~~~I~I~GhTD~~G~~~---~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~G~G~~ 194 (219)
T PRK10510 133 GVAMVLKEYPKTAVNVVGYTDSTGSHD---LNMRLSQQRADSVASALITQGVDASRIRTQGMGPA 194 (219)
T ss_pred HHHHHHHhCCCceEEEEEecCCCCChH---HHHHHHHHHHHHHHHHHHHcCCChhhEEEEEEcCC
Confidence 34455667899999999995 33221 0122222110 00 2466789999999953
No 252
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=54.49 E-value=36 Score=27.48 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHH
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
++..+.+.++..+.|++.++. ...+++=|||||+.++=++..+.
T Consensus 81 ~~~G~~~aee~~d~Ir~~le~---~D~vfI~aglGGGTGSG~apvia 124 (349)
T TIGR00065 81 PEIGRKAAEESRDEIRKLLEG---ADMVFITAGMGGGTGTGAAPVVA 124 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhC---CCEEEEEEeccCccchhHHHHHH
Confidence 445566667777777777753 45456669999988666665443
No 253
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=54.01 E-value=18 Score=27.55 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=22.6
Q ss_pred CCCeEEEeeccchHHHHHHHHHHHHhhcc
Q 045044 59 LNYTLTFARHSLGAGVVALLVLIVVQNLD 87 (122)
Q Consensus 59 p~~~l~vtGHSLGGavA~L~~~~l~~~~~ 87 (122)
|+-=+.+|||| |++=++++-+.+..+.+
T Consensus 27 ~Gef~fl~GpS-GAGKSTllkLi~~~e~p 54 (223)
T COG2884 27 KGEFVFLTGPS-GAGKSTLLKLIYGEERP 54 (223)
T ss_pred CceEEEEECCC-CCCHHHHHHHHHhhhcC
Confidence 55568899999 88999999988876643
No 254
>PRK07734 motB flagellar motor protein MotB; Reviewed
Probab=53.98 E-value=91 Score=23.84 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCCeEEEeeccc--h-------------HHHHHHHHHHHHhhccccCCCCCCceEEEEecC
Q 045044 49 EFLRGLVDRNLNYTLTFARHSL--G-------------AGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAP 104 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSL--G-------------GavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~ 104 (122)
..|...+..+|...|.|.||.= | ..-|.-..-.|..+ .+++..++.+.+||.
T Consensus 162 ~~ia~~l~~~~~~~i~I~GhTD~~~~~~~~~~~N~~LS~~RA~~V~~~L~~~----~gi~~~ri~~~G~G~ 228 (259)
T PRK07734 162 KEISNLLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLEN----KELDPEKFSAKGYGE 228 (259)
T ss_pred HHHHHHHHHCCCCeEEEEEecCCCCCccCCchhHHHHHHHHHHHHHHHHHHh----cCCChhhEEEEEEcC
Confidence 3444555567888999999973 2 22332222222221 235567899999996
No 255
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=52.68 E-value=81 Score=22.38 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHh
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLN-YTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVR 115 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~-~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~ 115 (122)
-+|++.+.+.+...+. ..+. .=++++|--=-|+-+..++-.|.+. ..+|+++.++++.-.+++....
T Consensus 6 E~Ag~~~a~~i~~~~~----~~~~~~v~il~G~GnNGgDgl~~AR~L~~~--------G~~V~v~~~~~~~~~~~~~~~~ 73 (169)
T PF03853_consen 6 ENAGRAIAELIRKLFG----SPKGPRVLILCGPGNNGGDGLVAARHLANR--------GYNVTVYLVGPPEKLSEDAKQQ 73 (169)
T ss_dssp HHHHHHHHHHHHHHST----CCTT-EEEEEE-SSHHHHHHHHHHHHHHHT--------TCEEEEEEEESSSSTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----ccCCCeEEEEECCCCChHHHHHHHHHHHHC--------CCeEEEEEEeccccCCHHHHHH
Confidence 3455555554333322 2222 3478888888899998888888655 3679999999988888877665
Q ss_pred cc
Q 045044 116 YE 117 (122)
Q Consensus 116 ~~ 117 (122)
.+
T Consensus 74 ~~ 75 (169)
T PF03853_consen 74 LE 75 (169)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 256
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=51.45 E-value=13 Score=31.64 Aligned_cols=28 Identities=14% Similarity=0.348 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHhhccccCCCCCCceEEEE
Q 045044 71 GAGVVALLVLIVVQNLDKFGNIKRNKIRCFA 101 (122)
Q Consensus 71 GGavA~L~~~~l~~~~~~~~~~~~~~v~~~t 101 (122)
|||+|+|+|....-+. +..|+.+|+++-
T Consensus 9 GsGiAsLAAAvfLIrD---a~~pg~nIhIlE 36 (500)
T PF06100_consen 9 GSGIASLAAAVFLIRD---AKMPGENIHILE 36 (500)
T ss_pred CCCHHHHHhhhhhhcc---CCCCccceEEEe
Confidence 8999999987554443 345678888763
No 257
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=51.34 E-value=85 Score=22.98 Aligned_cols=69 Identities=20% Similarity=0.152 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCC-eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc--CCHHHHHhccccc
Q 045044 45 DAKCEFLRGLVDRNLNY-TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC--MSLNLAVRYEWII 120 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~-~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v--~~~~~a~~~~~~i 120 (122)
+++.+.|+++.+ .|+. .|++.+.|.||.++.+-.+.- ....+ + ....+|+|..-.+ +...++..|..++
T Consensus 16 ~~l~~~l~~a~~-d~~i~~vvl~~~s~Gg~~~~~~~l~~--~i~~~---~-~~kpvia~v~g~a~s~g~~la~aaD~i~ 87 (207)
T TIGR00706 16 EDFDKKIKRIKD-DKSIKALLLRINSPGGTVVASEEIYE--KLKKL---K-AKKPVVASMGGVAASGGYYIAMAADEIV 87 (207)
T ss_pred HHHHHHHHHHhh-CCCccEEEEEecCCCCCHHHHHHHHH--HHHHh---c-CCCCEEEEECCccchHHHHHHhcCCEEE
Confidence 456667777654 3544 588899999998886543322 21112 1 1234555554433 3456666555443
No 258
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=49.25 E-value=50 Score=25.88 Aligned_cols=42 Identities=12% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHH
Q 045044 39 ATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 39 aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
..+...++..+.|++.++. ...++.=|||||+..+=++..+.
T Consensus 66 ~g~~~a~~~~~~I~~~l~~---~d~v~i~aglGGGTGSG~ap~ia 107 (304)
T cd02201 66 VGRKAAEESREEIKEALEG---ADMVFITAGMGGGTGTGAAPVIA 107 (304)
T ss_pred HHHHHHHHHHHHHHHHHhC---CCEEEEeeccCCCcchhHHHHHH
Confidence 3344455566667777654 55678889999988665555443
No 259
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=47.77 E-value=22 Score=26.65 Aligned_cols=30 Identities=7% Similarity=0.123 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
.+.+.+++++.|+-+|+|+||+=| +..|+.
T Consensus 139 ~~~i~~~i~~~~~~tVLIVGHnp~--i~~La~ 168 (201)
T PRK15416 139 YSAIKDLQRKSPDKNIVIFTHNHC--LTYIAK 168 (201)
T ss_pred HHHHHHHHHhCCCCEEEEEeCchh--HHHHHH
Confidence 344466677778888999999865 555544
No 260
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=47.20 E-value=61 Score=21.45 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhC--CCCeEEEeeccchHHHHHHHHHHHH
Q 045044 47 KCEFLRGLVDRN--LNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 47 ~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
+.+.+.+++++. ++-.++++|| |+.+..++...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~iliv~H--~~~i~~~~~~l~~ 120 (153)
T cd07040 84 VLNALLELLARHLLDGKNVLIVSH--GGTIRALLAALLG 120 (153)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEeC--CHHHHHHHHHHhC
Confidence 455666666654 5678999999 6778887776664
No 261
>PRK13320 pantothenate kinase; Reviewed
Probab=46.94 E-value=46 Score=25.35 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=22.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
++.|++.++....+.+.+. +.+++++.++++||
T Consensus 179 i~sG~~~~~~~~i~~~i~~---~~~~~~~~~vi~TG 211 (244)
T PRK13320 179 IRSGVVWGCVAEIEGLIEA---YKSKLPELLVILTG 211 (244)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHcCCCEEEEEC
Confidence 7788888777666554444 44445678999997
No 262
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=46.76 E-value=25 Score=26.22 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=10.1
Q ss_pred HHHHhCCCCeEEEeeccchHHHHH
Q 045044 53 GLVDRNLNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 53 ~~~~~~p~~~l~vtGHSLGGavA~ 76 (122)
+++++ -+++.++||.|||= +|+
T Consensus 102 ~ia~~-~ga~~IvTGEsLGQ-vaS 123 (197)
T PF02568_consen 102 EIAEE-EGADAIVTGESLGQ-VAS 123 (197)
T ss_dssp HHHHH-TT--EEE----SSS-TTS
T ss_pred HHHHH-CCCCEEEeCchhHH-HHh
Confidence 33444 48999999999994 454
No 263
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=46.69 E-value=37 Score=28.68 Aligned_cols=51 Identities=18% Similarity=0.029 Sum_probs=32.6
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEeeccchHHHHHHHHHHHHhhc
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRN--LNYTLTFARHSLGAGVVALLVLIVVQNL 86 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~--p~~~l~vtGHSLGGavA~L~~~~l~~~~ 86 (122)
.-|-|++.+.+.+-+ ....|+.++++. ...-++..|-|.||.+| .++|...
T Consensus 136 ~~hlgyLtseQALAD-fA~ll~~lK~~~~a~~~pvIafGGSYGGMLa----AWfRlKY 188 (492)
T KOG2183|consen 136 ARHLGYLTSEQALAD-FAELLTFLKRDLSAEASPVIAFGGSYGGMLA----AWFRLKY 188 (492)
T ss_pred hhhhccccHHHHHHH-HHHHHHHHhhccccccCcEEEecCchhhHHH----HHHHhcC
Confidence 378999998887755 333444443332 34569999999999654 4555443
No 264
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=45.55 E-value=1.1e+02 Score=23.08 Aligned_cols=27 Identities=7% Similarity=0.108 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 41 RWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
+.+.+++.+.+++.+++.+-.+|++||
T Consensus 176 ~~~~~~i~~~i~~~l~~~~~~~v~LtG 202 (239)
T TIGR02529 176 KPVYQKMASIVKRHIEGQGVKDLYLVG 202 (239)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 344566777777777777667899997
No 265
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=45.39 E-value=40 Score=21.07 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=25.1
Q ss_pred CCCCeEEEeeccchHHHHHHHHHHHHhhc--------cccCCCCCCceEEEEecCC
Q 045044 58 NLNYTLTFARHSLGAGVVALLVLIVVQNL--------DKFGNIKRNKIRCFAIAPT 105 (122)
Q Consensus 58 ~p~~~l~vtGHSLGGavA~L~~~~l~~~~--------~~~~~~~~~~v~~~tfg~P 105 (122)
++. .|.|.||+=..+-+.- -..|...+ -. .+++..++.+.+||..
T Consensus 29 ~~~-~i~I~G~td~~g~~~~-n~~LS~~RA~~V~~~L~~-~gi~~~ri~~~~~G~~ 81 (97)
T PF00691_consen 29 NKD-QIEIEGHTDSTGSAEY-NQELSQRRAEAVKQYLVE-NGIPPERISVVGYGES 81 (97)
T ss_dssp STT-EEEEEEEEESSSSHHH-HHHHHHHHHHHHHHHHHH-TTSSGGGEEEEEETTT
T ss_pred CCC-eEEEEEEEcCcchhhH-HhHHHHHHHHHHHHHHHH-cCCChHhEEEEEEccC
Confidence 344 6999999865321111 12221111 01 2466789999999973
No 266
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=44.67 E-value=38 Score=23.04 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhC--CCCeEEEeecc
Q 045044 39 ATRWVFDAKCEFLRGLVDRN--LNYTLTFARHS 69 (122)
Q Consensus 39 aa~~~~~~~~~~l~~~~~~~--p~~~l~vtGHS 69 (122)
++..+...+.+.+.++.+++ ++-.++|++|.
T Consensus 117 s~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg 149 (155)
T smart00855 117 SLADVVERLVRALEELIATHDKSGQNVLIVSHG 149 (155)
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCeEEEEECC
Confidence 45556666666677766554 55679999995
No 267
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=44.56 E-value=16 Score=30.15 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCCeEEEeeccchHHHHH
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLGGavA~ 76 (122)
-..|...++.-...+|..+|||.|.++.-
T Consensus 148 PA~IdyIL~~T~~~kl~yvGHSQGtt~~f 176 (403)
T KOG2624|consen 148 PAMIDYILEKTGQEKLHYVGHSQGTTTFF 176 (403)
T ss_pred HHHHHHHHHhccccceEEEEEEccchhhe
Confidence 34555556655568999999999987664
No 268
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=44.27 E-value=19 Score=31.76 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVAL 77 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L 77 (122)
.++..+++.+..-....+.+.-.+||...|+++|.|+|+.++.-
T Consensus 223 ~nI~h~ae~~vSf~r~kvlei~gefpha~IiLvGrsmGAlVach 266 (784)
T KOG3253|consen 223 ANIKHAAEYSVSFDRYKVLEITGEFPHAPIILVGRSMGALVACH 266 (784)
T ss_pred cchHHHHHHHHHHhhhhhhhhhccCCCCceEEEecccCceeeEE
Confidence 44555555544444444555566789999999999999665543
No 269
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=44.12 E-value=43 Score=21.65 Aligned_cols=24 Identities=4% Similarity=-0.086 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeec
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
.++...|++++.+||+.-|.+.|-
T Consensus 45 ~~Vl~el~~c~~~~p~~YVRlig~ 68 (84)
T cd00307 45 AQVLAALEACLAEHPGEYVRLIGI 68 (84)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEE
Confidence 346778888899999999998874
No 270
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=44.02 E-value=40 Score=22.10 Aligned_cols=33 Identities=6% Similarity=-0.071 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhC-CCCeEEEeeccchHHHHHHHHHHH
Q 045044 45 DAKCEFLRGLVDRN-LNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 45 ~~~~~~l~~~~~~~-p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
++....|+++.+.. |+-+|++|| -+|....-.+
T Consensus 53 ~k~~~~i~~l~~~~~~~~~ivv~G-----C~aq~~~~~l 86 (98)
T PF00919_consen 53 QKSRNRIRKLKKLKKPGAKIVVTG-----CMAQRYGEEL 86 (98)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEe-----CccccChHHH
Confidence 34555666666666 899999886 4444444444
No 271
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=43.74 E-value=21 Score=26.34 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.7
Q ss_pred HHHHHHHHHhCCCCeEEEeec
Q 045044 48 CEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGH 68 (122)
.+.+.++++++|+-+.+++||
T Consensus 137 ~~~~~~ll~~~~~V~~v~~GH 157 (214)
T cd07399 137 QQIWDKLVKKNDNVFMVLSGH 157 (214)
T ss_pred HHHHHHHHhCCCCEEEEEccc
Confidence 346777888899999999999
No 272
>PRK13322 pantothenate kinase; Reviewed
Probab=43.17 E-value=64 Score=24.60 Aligned_cols=35 Identities=20% Similarity=0.241 Sum_probs=25.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
.++.|++.+.....+.+.+.+++-. .++.++++||
T Consensus 180 ai~sG~~~~~~~~i~~~i~~~~~~~--~~~~~vilTG 214 (246)
T PRK13322 180 AVERGCLLMLRGFIESQLEQARELW--GPDFEIFLTG 214 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 3788888888877777666555533 2578999997
No 273
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed
Probab=42.78 E-value=50 Score=28.66 Aligned_cols=37 Identities=11% Similarity=0.005 Sum_probs=29.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
.++.|++.+.....+.+...+++...++++.++++||
T Consensus 511 ai~sG~~~~~~g~v~~~~~~~~~~~~~~~~~~vilTG 547 (592)
T PRK13325 511 AVASGMMDAVCGSVMMMHGRLKEKTGAGKPVDVIITG 547 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence 4899999999888888777777765545678999997
No 274
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=42.58 E-value=26 Score=25.63 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCeEEEeeccchHH
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLGAG 73 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLGGa 73 (122)
.+.+.++++++|+.+++++||.=...
T Consensus 170 ~~~~~~~l~~~~~v~~v~~GH~H~~~ 195 (240)
T cd07402 170 AEALAAVLARHPNVRAILCGHVHRPI 195 (240)
T ss_pred HHHHHHHHhcCCCeeEEEECCcCchH
Confidence 45677777778888999999987653
No 275
>PRK13331 pantothenate kinase; Reviewed
Probab=42.06 E-value=60 Score=25.09 Aligned_cols=44 Identities=11% Similarity=-0.020 Sum_probs=29.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHH
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
++.|++.++....+.+.+.++ +++++.++++|| +-|.++.-.++
T Consensus 179 i~sGi~~g~~g~i~~~i~~~~---~~~~~~~vi~TG-----G~a~~l~~~~~ 222 (251)
T PRK13331 179 IQSGVIYTILAGLRDFIEDWL---SLFPDGKIVLTG-----GDGELLHNYLQ 222 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHcCCCEEEEEC-----CCHHHHHHHhh
Confidence 788888888777666555444 445678999997 34555555443
No 276
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=42.06 E-value=21 Score=27.74 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=17.9
Q ss_pred EEEeeccchHHHHHHHHHHHHh
Q 045044 63 LTFARHSLGAGVVALLVLIVVQ 84 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~~~l~~ 84 (122)
-+|.|||-||-++.+-+..+..
T Consensus 107 ~vi~gHSkGg~Vvl~ya~K~~d 128 (269)
T KOG4667|consen 107 PVILGHSKGGDVVLLYASKYHD 128 (269)
T ss_pred EEEEeecCccHHHHHHHHhhcC
Confidence 3689999999999888777643
No 277
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=40.55 E-value=28 Score=26.49 Aligned_cols=24 Identities=13% Similarity=0.051 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCeEEEeeccchH
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLGA 72 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLGG 72 (122)
+.+.+++++||+.+++++||.=..
T Consensus 184 ~~l~~ll~~~~~v~~vl~GH~H~~ 207 (275)
T PRK11148 184 HELAEVLAKFPNVKAILCGHIHQE 207 (275)
T ss_pred HHHHHHHhcCCCceEEEecccChH
Confidence 467777888888999999998764
No 278
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=40.19 E-value=61 Score=27.57 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecC
Q 045044 43 VFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAP 104 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~ 104 (122)
..+++.+.|++.+|+....+=..+=||++||-+.+.+.++-.-.++.+ .+.+-.+.+.|
T Consensus 133 ~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~sG~gs~lLE~L~DEy~---k~~i~~~~v~P 191 (493)
T cd06060 133 FQEEFEDRLRFYVEECDYLQGFQVLCDLHDGFSGVGAKCLEHLQDEYG---KASLLFPGLPP 191 (493)
T ss_pred hHHHHHHHHHHHHHhCcccccEEEEEecCCcccchHHHHHHHHHHhcC---ccceeEEEeCC
Confidence 446678889999988776665556688888877776665543344442 23344444444
No 279
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.80 E-value=53 Score=25.56 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=24.8
Q ss_pred CeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCH
Q 045044 61 YTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSL 110 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~ 110 (122)
-.+.++.||.||.. ++.|....+. ..+|..|+|--.+++++
T Consensus 190 ~sv~vvahsyGG~~----t~~l~~~f~~-----d~~v~aialTDs~~~~p 230 (297)
T KOG3967|consen 190 ESVFVVAHSYGGSL----TLDLVERFPD-----DESVFAIALTDSAMGSP 230 (297)
T ss_pred ceEEEEEeccCChh----HHHHHHhcCC-----ccceEEEEeecccccCc
Confidence 47999999999974 3344333221 25777777654334433
No 280
>PRK13327 pantothenate kinase; Reviewed
Probab=39.01 E-value=80 Score=24.15 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=24.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
.++.|++.+.....+.+.+.+++... ++.++++||
T Consensus 174 ai~sG~~~~~~~~I~~~i~~~~~~~~--~~~~vilTG 208 (242)
T PRK13327 174 ALTSGCDGAAVALIERSLQHAHRSLG--QPVRLLVHG 208 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 38899998887766665554444321 367999997
No 281
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=39.00 E-value=67 Score=25.31 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
++-.+...++..+.|++.++. ...++.=|||||+.++=++..+.+.
T Consensus 64 ~~~G~~~a~e~~~~I~~~le~---~D~v~i~aglGGGTGSG~ap~ia~~ 109 (303)
T cd02191 64 PELGAEAAEEVQEAIDNIPVH---VDMVFITAGLGGGTGTGGAPVVAEH 109 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHcC---CCEEEEEeccCCccchhHHHHHHHH
Confidence 344445556666677776654 4568888999999888777766543
No 282
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=38.89 E-value=25 Score=25.76 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEeeccchHHHHH
Q 045044 44 FDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~ 76 (122)
++++...|.+++. -.-+++||||--=+.+
T Consensus 88 ~~~v~~~l~~li~----~~tILVGHsL~nDL~a 116 (174)
T cd06143 88 LKSAYLKLRLLVD----LGCIFVGHGLAKDFRV 116 (174)
T ss_pred HHHHHHHHHHHcC----CCCEEEeccchhHHHH
Confidence 3444455555543 2358999999876544
No 283
>PRK09038 flagellar motor protein MotD; Reviewed
Probab=38.86 E-value=1.6e+02 Score=22.87 Aligned_cols=49 Identities=8% Similarity=0.120 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCCeEEEeeccc--h-------------HHHHHHHHHHHHhhccccCCCCCCceEEEEecC
Q 045044 50 FLRGLVDRNLNYTLTFARHSL--G-------------AGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAP 104 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHSL--G-------------GavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~ 104 (122)
.|.+.+..+|+ +|.|.||.= | ..-|.-..-+|.. .+++..++.+.+||.
T Consensus 154 ~ia~~L~~~~~-~I~I~GHTD~~~~~~~~~~~Nw~LS~~RA~aV~~~L~~-----~Gi~~~ri~~~G~G~ 217 (281)
T PRK09038 154 KVAEVLKPAPN-PIHVEGFTDNVPIATAQFPSNWELSAARAASVVRLLAD-----DGVAPSRLAAVGYGE 217 (281)
T ss_pred HHHHHHHhCCC-eEEEEEECCCCCCcCCCCccHHHHHHHHHHHHHHHHHH-----cCCCHHHEEEEEECC
Confidence 34444555675 899999963 2 1233333323322 235677899999995
No 284
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=38.56 E-value=84 Score=23.18 Aligned_cols=28 Identities=14% Similarity=-0.029 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 40 TRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
...+.+++...|+++.+..|+.+|+++|
T Consensus 126 ~~~~~~~l~~~l~~i~~~~p~a~I~~~g 153 (259)
T cd01823 126 LDEVGARLKAVLDRIRERAPNARVVVVG 153 (259)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 3345555777777777788999999999
No 285
>PF13479 AAA_24: AAA domain
Probab=38.34 E-value=55 Score=24.03 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeecc
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLNYTLTFARHS 69 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHS 69 (122)
.++|..+-+.+...+++++.+ .+..|++|+|+
T Consensus 105 ~~~yg~~~~~~~~~i~~l~~~-~~~~VI~tah~ 136 (213)
T PF13479_consen 105 GKGYGELQQEFMRFIDKLLNA-LGKNVIFTAHA 136 (213)
T ss_pred cchHHHHHHHHHHHHHHHHHH-CCCcEEEEEEE
Confidence 455555555566666655543 67999999997
No 286
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=38.16 E-value=52 Score=25.31 Aligned_cols=52 Identities=8% Similarity=0.036 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCCeEEEeeccc--hHHHHHHHHHHHHhhcc-------ccCCCCCCceEEEEecC
Q 045044 50 FLRGLVDRNLNYTLTFARHSL--GAGVVALLVLIVVQNLD-------KFGNIKRNKIRCFAIAP 104 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHSL--GGavA~L~~~~l~~~~~-------~~~~~~~~~v~~~tfg~ 104 (122)
.+-..+.++|+.+|.|.||.= |-.-. -+.|...+- .-.+++..+++..+||.
T Consensus 156 ~iA~~Lk~~p~~~V~I~GHTD~~Gs~~~---N~~LS~~RA~aV~~yLv~~GI~~~RI~~~G~Ge 216 (239)
T TIGR03789 156 EVATLMKQSPELKLDLSGYADRRGDSQY---NQALSEQRVLEVRSYLIKQGVDEARLTTQAFGE 216 (239)
T ss_pred HHHHHHHhCCCCeEEEEEeCCCCCChhh---HHHHHHHHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 344455678999999999963 32211 122222210 00246778999999995
No 287
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=38.05 E-value=1.2e+02 Score=24.41 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=31.7
Q ss_pred HHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecC---CCcCCHHHHHhc
Q 045044 51 LRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAP---TKCMSLNLAVRY 116 (122)
Q Consensus 51 l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~---P~v~~~~~a~~~ 116 (122)
+++.+++...-+++|+| ||.++.=++..++.. ..+|+++.-++ |+..++++++..
T Consensus 140 l~~~l~~~~~~~vvVvG---gG~~g~e~A~~l~~~--------g~~Vtli~~~~~~l~~~~~~~~~~~l 197 (444)
T PRK09564 140 LKELLKDEEIKNIVIIG---AGFIGLEAVEAAKHL--------GKNVRIIQLEDRILPDSFDKEITDVM 197 (444)
T ss_pred HHHHHhhcCCCEEEEEC---CCHHHHHHHHHHHhc--------CCcEEEEeCCcccCchhcCHHHHHHH
Confidence 33334334456899998 566666666666533 25677775543 223466666543
No 288
>PRK08944 motB flagellar motor protein MotB; Reviewed
Probab=37.93 E-value=1.9e+02 Score=22.87 Aligned_cols=51 Identities=8% Similarity=0.141 Sum_probs=29.6
Q ss_pred HHHHHHHHhCCCCeEEEeeccch---------------HHHHHHHHHHHHhhccccCCCCCCceEEEEecC
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLG---------------AGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAP 104 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLG---------------GavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~ 104 (122)
..|..++..+|+ +|.|.||.=- .+-|.-.+-.|... .+++..++.+.+||.
T Consensus 199 ~~ia~~L~~~~~-~I~I~GHTD~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~----~Gi~~~ri~~~G~Ge 264 (302)
T PRK08944 199 RKIGELLKDVPG-IITVSGHTDNVPISSELYRSNWDLSSARAVAVAHELLKV----KGFDPQRLKVVGMAD 264 (302)
T ss_pred HHHHHHHHhCCC-eEEEEEecCCCCCcccccchHHHHHHHHHHHHHHHHHHh----cCCChhHEEEEEEcC
Confidence 334444556676 7999999642 22232222223221 235678899999995
No 289
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=37.86 E-value=86 Score=26.43 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHh
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQ 84 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~ 84 (122)
+.+.+++....+.--.-+|-+.||+.||-+.+.+...++.
T Consensus 165 e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~~ 204 (445)
T COG3243 165 EGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMAA 204 (445)
T ss_pred HHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhhh
Confidence 3344555555554445789999999999988766655543
No 290
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=37.83 E-value=41 Score=26.72 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCeEEEeecc
Q 045044 48 CEFLRGLVDRNLNYTLTFARHS 69 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHS 69 (122)
-+.+.+++++++.-=|++|||-
T Consensus 143 p~~i~~Ll~~~~PDIlViTGHD 164 (287)
T PF05582_consen 143 PEKIYRLLEEYRPDILVITGHD 164 (287)
T ss_pred hHHHHHHHHHcCCCEEEEeCch
Confidence 3678888888877889999995
No 291
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=37.65 E-value=93 Score=18.74 Aligned_cols=45 Identities=9% Similarity=-0.002 Sum_probs=28.9
Q ss_pred eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc--CCHHHHHhcc
Q 045044 62 TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC--MSLNLAVRYE 117 (122)
Q Consensus 62 ~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v--~~~~~a~~~~ 117 (122)
+++|.| ||.+|.=++..|... ...++++.-++... .+++.++...
T Consensus 1 ~vvViG---gG~ig~E~A~~l~~~--------g~~vtli~~~~~~~~~~~~~~~~~~~ 47 (80)
T PF00070_consen 1 RVVVIG---GGFIGIELAEALAEL--------GKEVTLIERSDRLLPGFDPDAAKILE 47 (80)
T ss_dssp EEEEES---SSHHHHHHHHHHHHT--------TSEEEEEESSSSSSTTSSHHHHHHHH
T ss_pred CEEEEC---cCHHHHHHHHHHHHh--------CcEEEEEeccchhhhhcCHHHHHHHH
Confidence 466776 667777777777543 25777777765443 5777766543
No 292
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=37.56 E-value=1.3e+02 Score=23.60 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC 107 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v 107 (122)
.+..++++++||+-+.+++.-+.+ +.+++-++ +.. + ...+.+++|+.|..
T Consensus 197 ~~~~~~lL~~~pdi~aI~~~~~~~-~~Ga~~Al--~~~----g---~~~v~VvG~D~~~~ 246 (336)
T PRK15408 197 LQTAEGILKAYPDLDAIIAPDANA-LPAAAQAA--ENL----K---RDKVAIVGFSTPNV 246 (336)
T ss_pred HHHHHHHHHHCCCCcEEEECCCcc-HHHHHHHH--HhC----C---CCCEEEEEeCCcHH
Confidence 346778888899988877764433 32322222 211 1 12789999987753
No 293
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=37.21 E-value=1.4e+02 Score=24.38 Aligned_cols=53 Identities=6% Similarity=-0.049 Sum_probs=32.6
Q ss_pred HHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCC--CcCCHHHHHh
Q 045044 52 RGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPT--KCMSLNLAVR 115 (122)
Q Consensus 52 ~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P--~v~~~~~a~~ 115 (122)
++.+.+...-+++|+| ||.++.=++..|+.. ..+|+++.-++. +..++++.+.
T Consensus 140 ~~~l~~~~~~~vvViG---gG~ig~E~A~~l~~~--------g~~Vtli~~~~~l~~~~d~~~~~~ 194 (438)
T PRK13512 140 DQFIKANQVDKALVVG---AGYISLEVLENLYER--------GLHPTLIHRSDKINKLMDADMNQP 194 (438)
T ss_pred HHHHhhcCCCEEEEEC---CCHHHHHHHHHHHhC--------CCcEEEEecccccchhcCHHHHHH
Confidence 3333333346899999 788888777777643 256787776542 2346665543
No 294
>PF06961 DUF1294: Protein of unknown function (DUF1294); InterPro: IPR010718 This family includes a number of hypothetical bacterial and archaeal proteins of unknown function.
Probab=37.18 E-value=29 Score=20.61 Aligned_cols=16 Identities=31% Similarity=0.330 Sum_probs=13.3
Q ss_pred chHHHHHHHHHHHHhh
Q 045044 70 LGAGVVALLVLIVVQN 85 (122)
Q Consensus 70 LGGavA~L~~~~l~~~ 85 (122)
+||.+++++++.+..+
T Consensus 33 ~GG~~Ga~~~m~~frH 48 (55)
T PF06961_consen 33 LGGWPGALLGMYLFRH 48 (55)
T ss_pred HHhHHHHHHHHHHhcc
Confidence 6899999999887655
No 295
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=36.74 E-value=63 Score=21.53 Aligned_cols=23 Identities=0% Similarity=-0.167 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEeec
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
++...|++++.+||+.-|.+.|-
T Consensus 61 ~Vl~ei~~C~~~~p~~YVRliG~ 83 (99)
T cd03527 61 QVLREIEACRKAYPDHYVRVVGF 83 (99)
T ss_pred HHHHHHHHHHHHCCCCeEEEEEE
Confidence 46778888899999999998884
No 296
>COG4099 Predicted peptidase [General function prediction only]
Probab=36.66 E-value=60 Score=26.47 Aligned_cols=31 Identities=13% Similarity=-0.079 Sum_probs=20.2
Q ss_pred HHHHHH-HHHHhC--CCCeEEEeeccchHHHHHH
Q 045044 47 KCEFLR-GLVDRN--LNYTLTFARHSLGAGVVAL 77 (122)
Q Consensus 47 ~~~~l~-~~~~~~--p~~~l~vtGHSLGGavA~L 77 (122)
..+.+. .+.++| ..-||.++|.|.||-.+.-
T Consensus 252 ~idli~~vlas~ynID~sRIYviGlSrG~~gt~a 285 (387)
T COG4099 252 KIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWA 285 (387)
T ss_pred HHHHHHHHHhhccCcccceEEEEeecCcchhhHH
Confidence 444555 444454 2468999999999765543
No 297
>PRK13318 pantothenate kinase; Reviewed
Probab=36.45 E-value=93 Score=23.54 Aligned_cols=35 Identities=3% Similarity=0.022 Sum_probs=24.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
.++.|++.+.....+.+.+.+++-. .++.++++||
T Consensus 188 ai~~G~~~~~~~~i~~~~~~~~~~~--~~~~~vi~TG 222 (258)
T PRK13318 188 AMQSGIYYGYVGLVEGIVKRIKEEL--GKDPKVIATG 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 3889999888877777655555432 1367899997
No 298
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=36.28 E-value=1.4e+02 Score=23.97 Aligned_cols=53 Identities=8% Similarity=0.108 Sum_probs=30.8
Q ss_pred HHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCC---CcCCHHHHH
Q 045044 51 LRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPT---KCMSLNLAV 114 (122)
Q Consensus 51 l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P---~v~~~~~a~ 114 (122)
+++.++.....+++|+| ||.++.-++..|+.. ...|+++.-+++ +..++++.+
T Consensus 128 ~~~~l~~~~~~~vvViG---gG~~g~e~A~~l~~~--------g~~Vtli~~~~~~~~~~~~~~~~~ 183 (427)
T TIGR03385 128 IKQYIDKNKVENVVIIG---GGYIGIEMAEALRER--------GKNVTLIHRSERILNKLFDEEMNQ 183 (427)
T ss_pred HHHHHhhcCCCeEEEEC---CCHHHHHHHHHHHhC--------CCcEEEEECCcccCccccCHHHHH
Confidence 44444444557899988 566666666666543 246777776543 234555544
No 299
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=35.17 E-value=37 Score=28.07 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHH
Q 045044 34 NGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVAL 77 (122)
Q Consensus 34 ~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L 77 (122)
+|.|.-.+.+.+-....++++.+...+++=.+.=||.||+..+=
T Consensus 104 rghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg 147 (407)
T KOG1376|consen 104 RGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSG 147 (407)
T ss_pred hhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCC
Confidence 56666666777778888899888888887777779999965443
No 300
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=35.03 E-value=71 Score=23.09 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=24.4
Q ss_pred CCceEEEEecCCCcCCHHHHHhcccccc
Q 045044 94 RNKIRCFAIAPTKCMSLNLAVRYEWIIN 121 (122)
Q Consensus 94 ~~~v~~~tfg~P~v~~~~~a~~~~~~i~ 121 (122)
....+++.+|.++..+.+|.+.|..||.
T Consensus 127 e~G~~V~v~g~~~~ts~~L~~acd~FI~ 154 (160)
T TIGR00288 127 ENGKETIVIGAEPGFSTALQNSADIAII 154 (160)
T ss_pred HCCCEEEEEeCCCCChHHHHHhcCeEEe
Confidence 3578899999999999999999999984
No 301
>PRK13326 pantothenate kinase; Reviewed
Probab=35.00 E-value=83 Score=24.33 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=25.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeec
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
.++.|++.++....+.+.+.+++-.. .+.++++||-
T Consensus 190 aI~sGi~~g~~~~I~g~i~~~~~e~~--~~~~vv~TGG 225 (262)
T PRK13326 190 SVNSGVIYQYKYLIEGVYHDLKRNYD--REFNLIITGG 225 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 38899999888777766555544432 2678999973
No 302
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=34.97 E-value=90 Score=23.69 Aligned_cols=36 Identities=6% Similarity=0.065 Sum_probs=25.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeec
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
.++.|++.++....+.+.+.+++-+. ++.++++||-
T Consensus 180 ai~sG~~~g~~~~i~~~i~~~~~~~~--~~~~vi~TGG 215 (243)
T TIGR00671 180 AVQSGAVYGVLGLIQGLLKDWKKYFK--RKFAVVITGG 215 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 38888888888777766555544432 2679999984
No 303
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=34.74 E-value=77 Score=21.06 Aligned_cols=24 Identities=4% Similarity=-0.079 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeec
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
.++...|++++.+||+.-|.+.|-
T Consensus 59 ~~Vl~el~~c~~~~p~~yVRlig~ 82 (99)
T PF00101_consen 59 AQVLAELEACLAEHPGEYVRLIGF 82 (99)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEEE
Confidence 346778888999999999988873
No 304
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=34.48 E-value=63 Score=23.02 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCeEEEeeccc--hH---------HHHHHHHHHHHhhccccCCCCCCceEEEEecC
Q 045044 51 LRGLVDRNLNYTLTFARHSL--GA---------GVVALLVLIVVQNLDKFGNIKRNKIRCFAIAP 104 (122)
Q Consensus 51 l~~~~~~~p~~~l~vtGHSL--GG---------avA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~ 104 (122)
+.+.+.++|...|.|.||.= |- .-|.-..-.|... .+++..++++.+||.
T Consensus 74 ia~~l~~~~~~~v~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~----~gi~~~ri~~~g~Ge 134 (160)
T PRK09967 74 MAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAWAMG----GQIPRSNLTTQGLGK 134 (160)
T ss_pred HHHHHHhCCCceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHeEEEEecC
Confidence 33445556888999999963 32 2222222222211 135667899999997
No 305
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=34.35 E-value=64 Score=20.87 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=17.5
Q ss_pred HHH-HHHHHHHhCCCCeEEEeec
Q 045044 47 KCE-FLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 47 ~~~-~l~~~~~~~p~~~l~vtGH 68 (122)
+.+ .++++.+++|+.+++++|.
T Consensus 20 li~~~~~~l~~~~p~~~l~i~G~ 42 (135)
T PF13692_consen 20 LIEAALERLKEKHPDIELIIIGN 42 (135)
T ss_dssp HHH-HHHHHHHHSTTEEEEEECE
T ss_pred hhhhHHHHHHHHCcCEEEEEEeC
Confidence 444 6677777889999999998
No 306
>cd03859 M14_CPT Peptidase M14-like domain of carboxypeptidase (CP) T (CPT), CPT belongs to the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPT has moderate similarity to CPA and CPB, and exhibits dual-substrate specificity by cleaving C-terminal hydrophobic amino acid residues like CPA and C-terminal positively charged residues like CPB. CPA and CPB are M14 family peptidases but do not belong to this CPT group. The substrate specificity difference between CPT and CPA and CPB is ascribed to a few amino acid substitutions at the substrate-binding pocket while the spatial organization of the binding site remains the same as in all Zn-CPs. CPT has increased thermal stability in presence of Ca2+ ions, and two disulfide bridges which give an additional stabilization factor.
Probab=34.32 E-value=52 Score=25.65 Aligned_cols=29 Identities=10% Similarity=-0.004 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCC-CeEEEeeccchH
Q 045044 44 FDAKCEFLRGLVDRNLN-YTLTFARHSLGA 72 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~-~~l~vtGHSLGG 72 (122)
++++.+.|+++.++||+ .++...|.|.-|
T Consensus 7 y~ei~~~l~~l~~~~p~~v~~~~iG~S~eG 36 (295)
T cd03859 7 YLEMVDELNAAAAAYPNLTKVKSIGKSYEG 36 (295)
T ss_pred HHHHHHHHHHHHHHCCCceEEEeeeecCCC
Confidence 57788999999999998 688888999876
No 307
>PRK12829 short chain dehydrogenase; Provisional
Probab=34.32 E-value=1.1e+02 Score=22.32 Aligned_cols=29 Identities=3% Similarity=0.015 Sum_probs=21.4
Q ss_pred HHhCCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 55 VDRNLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 55 ~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
+...++.+++|||-| |+++..++..|.++
T Consensus 6 ~~~~~~~~vlItGa~--g~iG~~~a~~L~~~ 34 (264)
T PRK12829 6 LKPLDGLRVLVTGGA--SGIGRAIAEAFAEA 34 (264)
T ss_pred hhccCCCEEEEeCCC--CcHHHHHHHHHHHC
Confidence 334577899999997 67777777777654
No 308
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=33.78 E-value=32 Score=26.14 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=12.0
Q ss_pred EEeeccchHHHHHHHH
Q 045044 64 TFARHSLGAGVVALLV 79 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~ 79 (122)
.++|||+|-=.|..++
T Consensus 85 ~~~GhSlGE~aA~~~a 100 (298)
T smart00827 85 AVVGHSLGEIAAAYVA 100 (298)
T ss_pred EEEecCHHHHHHHHHh
Confidence 7899999976665544
No 309
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=33.65 E-value=63 Score=23.77 Aligned_cols=19 Identities=26% Similarity=0.032 Sum_probs=16.3
Q ss_pred EEeeccchHHHHHHHHHHH
Q 045044 64 TFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~~~l 82 (122)
.++|-|.|+-+|++++...
T Consensus 29 ~i~GtS~GAl~aa~~a~~~ 47 (215)
T cd07209 29 IISGTSIGAINGALIAGGD 47 (215)
T ss_pred EEEEECHHHHHHHHHHcCC
Confidence 7899999999999888643
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=32.99 E-value=63 Score=15.42 Aligned_cols=17 Identities=24% Similarity=0.595 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhCCC
Q 045044 44 FDAKCEFLRGLVDRNLN 60 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~ 60 (122)
+++-.+.+++++++||+
T Consensus 16 ~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 16 YDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHCcC
Confidence 44566788888888986
No 311
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=32.95 E-value=2.3e+02 Score=23.03 Aligned_cols=77 Identities=10% Similarity=0.034 Sum_probs=51.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccch-----------HHHHHHH--HHHHHhhccccCCCCCCceE
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLG-----------AGVVALL--VLIVVQNLDKFGNIKRNKIR 98 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLG-----------GavA~L~--~~~l~~~~~~~~~~~~~~v~ 98 (122)
+|.+|---+..-++-....++...+.-+.++|++++-++| .+-+++- +..|+++ + ...+|+
T Consensus 136 v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~GysaYs~sK~alrgLa~~l~qE---~---i~~~v~ 209 (331)
T KOG1210|consen 136 VEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALRGLAEALRQE---L---IKYGVH 209 (331)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcccccccccHHHHHHHHHHHHHHH---H---hhcceE
Confidence 7777766666666666777777776666679999998886 1112222 2234333 2 134899
Q ss_pred EEEecCCCcCCHHHHH
Q 045044 99 CFAIAPTKCMSLNLAV 114 (122)
Q Consensus 99 ~~tfg~P~v~~~~~a~ 114 (122)
+..+-||.+.++-|.+
T Consensus 210 Vt~~~P~~~~tpGfE~ 225 (331)
T KOG1210|consen 210 VTLYYPPDTLTPGFER 225 (331)
T ss_pred EEEEcCCCCCCCcccc
Confidence 9999999999987765
No 312
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=32.73 E-value=42 Score=26.55 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHH--------------HHHHHHHHHHhCCCCeEEEeecc
Q 045044 34 NGLLKATRWVFDA--------------KCEFLRGLVDRNLNYTLTFARHS 69 (122)
Q Consensus 34 ~Gf~~aa~~~~~~--------------~~~~l~~~~~~~p~~~l~vtGHS 69 (122)
.-+++--..+|++ +-+.+..+++++..-=|++|||-
T Consensus 114 ~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 114 PEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCch
Confidence 4455555556655 23678888888877789999996
No 313
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=32.72 E-value=38 Score=25.77 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=15.2
Q ss_pred HHHHHhCCCCeEEEeeccc
Q 045044 52 RGLVDRNLNYTLTFARHSL 70 (122)
Q Consensus 52 ~~~~~~~p~~~l~vtGHSL 70 (122)
+++.++.|+..+++.|||=
T Consensus 210 ~~la~~~~~vD~IlgGHsH 228 (277)
T cd07410 210 YELAEEVPGIDAILTGHQH 228 (277)
T ss_pred HHHHhcCCCCcEEEeCCCc
Confidence 3566667999999999994
No 314
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=32.56 E-value=1.8e+02 Score=25.67 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=33.8
Q ss_pred cccccCCCchhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeec------cchHHHHHHHHHHH
Q 045044 23 GQTKFDGGYVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARH------SLGAGVVALLVLIV 82 (122)
Q Consensus 23 ~~~~~~~g~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGH------SLGGavA~L~~~~l 82 (122)
+...|-||+- +-+-+-.|.=-+-+..+|++.+.+ .-++.|.|| ++|+|++...-...
T Consensus 303 ~k~~fyGG~s-~~~ekrTRvRaRvis~al~d~i~e--~d~VfImGHk~pDmDalGsAig~~~~A~~ 365 (655)
T COG3887 303 GKVRFYGGKS-NPMEKRTRVRARVISTALSDIIKE--SDNVFIMGHKFPDMDALGSAIGMQKFASM 365 (655)
T ss_pred CceeeeCCCc-chhHHhHHHHHHHHHHHHHHHHhh--cCcEEEEccCCCChHHHHHHHHHHHHHHh
Confidence 3344555552 222333332223356677777665 468999999 89999997544333
No 315
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=31.98 E-value=66 Score=22.18 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=15.4
Q ss_pred HHHHHHHhC--CCCeEEEeeccch
Q 045044 50 FLRGLVDRN--LNYTLTFARHSLG 71 (122)
Q Consensus 50 ~l~~~~~~~--p~~~l~vtGHSLG 71 (122)
.|++.+++. +...|+++-||+=
T Consensus 6 ~I~~~~~~~~~~~~~llfsaHgiP 29 (135)
T cd00419 6 HIREALAELPREKDRLLFSAHGLP 29 (135)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCH
Confidence 444444443 6789999999986
No 316
>PRK13328 pantothenate kinase; Reviewed
Probab=31.83 E-value=1e+02 Score=23.67 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=24.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCC-CCeEEEee
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNL-NYTLTFAR 67 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p-~~~l~vtG 67 (122)
.++.|++.++....+.+.+.+++. ++ +.++++||
T Consensus 188 ai~sG~~~~~~~~i~~~i~~~~~~---~~~~~~vi~TG 222 (255)
T PRK13328 188 AISAGCLAAQAGLIERAWRDLAAR---WQAPVRLVLSG 222 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hCCCCEEEEEC
Confidence 388898888887777655554443 44 47899997
No 317
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=31.69 E-value=51 Score=24.29 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=23.3
Q ss_pred chhHhHHHHH--HHHHHHHHH-----HHHHHHHhCCCCeEEEeeccc
Q 045044 31 YVHNGLLKAT--RWVFDAKCE-----FLRGLVDRNLNYTLTFARHSL 70 (122)
Q Consensus 31 ~vH~Gf~~aa--~~~~~~~~~-----~l~~~~~~~p~~~l~vtGHSL 70 (122)
.||.|+-.-+ ..+.+.... .+++.++.+ +.+++|+||.=
T Consensus 132 fvHag~~~~w~r~y~~~~~~~~~~~~~~~~~l~~~-~~~~iv~GHTh 177 (208)
T cd07425 132 FVHGGLGPLWYRGYSKETSDKECAAAHLDKVLERL-GAKRMVVGHTP 177 (208)
T ss_pred EEeCCcHHHHhhHhhhhhhhccchHHHHHHHHHHc-CCCeEEEcCee
Confidence 4999984444 222222211 366666664 46899999973
No 318
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=31.24 E-value=2.1e+02 Score=22.47 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=16.3
Q ss_pred cccCCCchhHhHHHHHHHHHHH
Q 045044 25 TKFDGGYVHNGLLKATRWVFDA 46 (122)
Q Consensus 25 ~~~~~g~vH~Gf~~aa~~~~~~ 46 (122)
..|..|.-|.+++++......+
T Consensus 8 ~~~CpGCg~~~i~~~~~~a~~~ 29 (280)
T PRK11869 8 IAWCPGCGNFGIRNALMKALSE 29 (280)
T ss_pred CCCCcCCCCHHHHHHHHHHHHH
Confidence 4567788899999887766644
No 319
>TIGR02625 YiiL_rotase L-rhamnose 1-epimerase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp.
Probab=31.23 E-value=69 Score=21.29 Aligned_cols=37 Identities=14% Similarity=0.232 Sum_probs=29.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhC--CCCeEEEee
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRN--LNYTLTFAR 67 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~--p~~~l~vtG 67 (122)
+++-|..+.++...+++-+.|.+.+.+. .+|+|.+-|
T Consensus 7 ~l~p~~~~eY~~~H~~vWPEv~~~L~~~Gi~~ysIfl~~ 45 (102)
T TIGR02625 7 YVNPDAHEEYQKRHNEIWPELKEVLKSHGAHNYSIFLDK 45 (102)
T ss_pred EeCHHHHHHHHHHHHccCHHHHHHHHHCCCeEEEEEEEC
Confidence 4678888999988888888888887765 578887764
No 320
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=30.63 E-value=1.3e+02 Score=20.90 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHH
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
..+.++.++ .++..++|||.+.-....++...++
T Consensus 86 ~~l~~~a~~-~~~~~i~~Gh~~dD~~e~~l~~l~~ 119 (185)
T cd01992 86 DFFAEIAKE-HGADVLLTAHHADDQAETVLMRLLR 119 (185)
T ss_pred HHHHHHHHH-cCCCEEEEcCCcHHHHHHHHHHHHc
Confidence 444554444 5688999999999887777665554
No 321
>PRK13018 cell division protein FtsZ; Provisional
Probab=30.20 E-value=1.3e+02 Score=24.65 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 44 FDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
.++..+.|++.+ .+...++.=|||||+..+=++..+.+.
T Consensus 99 aee~~d~I~~~l---e~~D~vfI~aGLGGGTGSGaapvIa~i 137 (378)
T PRK13018 99 AEESRDEIKEVL---KGADLVFVTAGMGGGTGTGAAPVVAEI 137 (378)
T ss_pred HHHHHHHHHHHh---cCCCEEEEEeeccCcchhhHHHHHHHH
Confidence 344445555555 356678889999998877776655443
No 322
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=30.13 E-value=67 Score=23.32 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchHH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGAG 73 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGGa 73 (122)
....+.++++.+++|+.+|++|-.+--|.
T Consensus 35 ~a~~~Li~~l~~~~p~~~illT~~T~tg~ 63 (186)
T PF04413_consen 35 NAARPLIKRLRKQRPDLRILLTTTTPTGR 63 (186)
T ss_dssp HHHHHHHHHHTT---TS-EEEEES-CCHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEecCCchH
Confidence 34567888888889999999999977665
No 323
>PRK13324 pantothenate kinase; Reviewed
Probab=30.05 E-value=1.2e+02 Score=23.37 Aligned_cols=35 Identities=6% Similarity=-0.164 Sum_probs=24.2
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
.++.|++.++....+.+.+.+++-.. ++.++++||
T Consensus 188 ai~sG~~~g~~~~i~~~~~~~~~~~~--~~~~vi~TG 222 (258)
T PRK13324 188 NIRSGLYYGHLGALKELKRRSVEEFG--SPVYTIATG 222 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 37888888888777666555544332 367899997
No 324
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=29.95 E-value=1.8e+02 Score=22.88 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhCC---CCeEEEeeccchHHHHHHHHHHH
Q 045044 43 VFDAKCEFLRGLVDRNL---NYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~~p---~~~l~vtGHSLGGavA~L~~~~l 82 (122)
..+.+.+.++++.++.+ +-.++|+.| ||.+-.|+...+
T Consensus 212 ~~~Rv~~al~~i~~r~~~~~~~~vLVVsH--GgvIR~ll~~lL 252 (299)
T PTZ00122 212 DMKRIEAAFEKYFHRPVEDEDSVEIIVCH--GNVIRYLVCRAL 252 (299)
T ss_pred HHHHHHHHHHHHHHhcccCCCCeEEEEeC--ChHHHHHHHHHh
Confidence 34556666777665553 235799999 788888887665
No 325
>PRK13321 pantothenate kinase; Reviewed
Probab=29.68 E-value=1.4e+02 Score=22.61 Aligned_cols=35 Identities=6% Similarity=0.013 Sum_probs=24.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeec
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
++.|++.+.....+.+.+.+++... ++.++++||-
T Consensus 189 i~~G~~~~~~~~i~~~i~~~~~~~~--~~~~vi~TGG 223 (256)
T PRK13321 189 IQSGLYYGYAGLVEGIVARIKAELG--GPPRVIATGG 223 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 7888888888777776665555431 3578999974
No 326
>PRK13329 pantothenate kinase; Reviewed
Probab=29.67 E-value=1.1e+02 Score=23.30 Aligned_cols=35 Identities=9% Similarity=-0.032 Sum_probs=23.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
.++.|++.+.....+.+.+.+++-. ..+.++++||
T Consensus 181 ai~sG~~~g~~~~I~~~i~~~~~~~--~~~~~vilTG 215 (249)
T PRK13329 181 ALTSGGTQAIAGAVERMFRHLAQHC--GAEPECLLTG 215 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 3788888888766666555544432 1246899997
No 327
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=29.39 E-value=1.3e+02 Score=21.21 Aligned_cols=34 Identities=9% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHH
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
..+.+...+ .++..+++||.+.=-...++...++
T Consensus 89 ~~l~~~a~~-~g~~~i~~Gh~~~D~~e~~l~~~~~ 122 (189)
T TIGR02432 89 DFFEEIAKK-HGADYILTAHHADDQAETILLRLLR 122 (189)
T ss_pred HHHHHHHHH-cCCCEEEEcCccHHHHHHHHHHHHc
Confidence 445555555 4799999999999877766654443
No 328
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=29.23 E-value=40 Score=25.42 Aligned_cols=16 Identities=31% Similarity=0.216 Sum_probs=11.8
Q ss_pred EEeeccchHHHHHHHH
Q 045044 64 TFARHSLGAGVVALLV 79 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~ 79 (122)
.+.|||+|==.|+.++
T Consensus 86 ~v~GhS~GE~aAa~~a 101 (290)
T TIGR00128 86 FAAGHSLGEYSALVAA 101 (290)
T ss_pred EEeecCHHHHHHHHHh
Confidence 6899999975555444
No 329
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=29.18 E-value=69 Score=25.74 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCCC-eEEEeeccchH
Q 045044 44 FDAKCEFLRGLVDRNLNY-TLTFARHSLGA 72 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~-~l~vtGHSLGG 72 (122)
++++.+.|+++.++||+. ++...|.|.-|
T Consensus 4 y~ei~~~l~~l~~~~p~~~~~~~iG~S~eG 33 (374)
T cd03858 4 YAELESFLKEVAANYPNITRLYSIGKSVQG 33 (374)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEcccCCCC
Confidence 577889999999999986 78888988754
No 330
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=29.07 E-value=35 Score=20.22 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=11.4
Q ss_pred hCCCCeEEEeeccc
Q 045044 57 RNLNYTLTFARHSL 70 (122)
Q Consensus 57 ~~p~~~l~vtGHSL 70 (122)
..++-.|++||||-
T Consensus 23 ~~~~C~I~ItGeSv 36 (59)
T PF02495_consen 23 SSPSCVIVITGESV 36 (59)
T ss_pred CCCCcEEEEeCcEE
Confidence 45678999999994
No 331
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=29.03 E-value=2.5e+02 Score=20.99 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCC
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTK 106 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~ 106 (122)
..+.++++++++|+.+.+++. +=.++++.+-++. +. + ....+.+++|+.+.
T Consensus 172 ~~~~~~~~L~~~~~~~ai~~~-~d~~a~ga~~al~--~~----g--~~~~i~vvg~d~~~ 222 (302)
T TIGR02637 172 SYQEAQGLLKSYPNLKGIIAP-TTVGIKAAAQAVS--DA----K--LIGKVKLTGLGLPS 222 (302)
T ss_pred HHHHHHHHHHhCCCccEEEeC-CCchHHHHHHHHH--hc----C--CCCCEEEEEcCCcH
Confidence 345677778888887777763 3333444433221 11 1 12478999998643
No 332
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=28.89 E-value=1.3e+02 Score=24.71 Aligned_cols=32 Identities=19% Similarity=-0.003 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCeEE-EeeccchHHHHHHHH
Q 045044 48 CEFLRGLVDRNLNYTLT-FARHSLGAGVVALLV 79 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~-vtGHSLGGavA~L~~ 79 (122)
...-+.+++..-=-+|. |+|-||||..|.=-+
T Consensus 133 V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa 165 (368)
T COG2021 133 VRAQRLLLDALGIKKLAAVVGGSMGGMQALEWA 165 (368)
T ss_pred HHHHHHHHHhcCcceEeeeeccChHHHHHHHHH
Confidence 33335566655444666 899999999885443
No 333
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=28.85 E-value=1.7e+02 Score=23.85 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=32.6
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
.-|++ ..+..++++..+.|+++++.-.+|++.+.- |||....-++.+
T Consensus 40 isHRs--~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~---GggT~~~ea~~~ 86 (364)
T PRK12462 40 MSHRS--SWFSSLLAQAEADLRDLLGIPDEYGVVFLQ---GGSSLQFSMIPM 86 (364)
T ss_pred ccccc--HHHHHHHHHHHHHHHHHhCCCCCCeEEEEe---ccHHHHHHHHHH
Confidence 35774 678889999999999998763369987765 555554444433
No 334
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=28.81 E-value=84 Score=25.23 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=15.5
Q ss_pred EEeeccchHHHHHHHHH
Q 045044 64 TFARHSLGAGVVALLVL 80 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~~ 80 (122)
+|+|-|-||-+|++++.
T Consensus 44 lIaGTStGgIIAa~la~ 60 (344)
T cd07217 44 FVGGTSTGSIIAACIAL 60 (344)
T ss_pred EEEEecHHHHHHHHHHc
Confidence 78999999999999885
No 335
>PRK04148 hypothetical protein; Provisional
Probab=28.59 E-value=1e+02 Score=21.50 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
++.+.|.+.+.+..+.+++.+|=..|..+|..++
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHH
Confidence 3445555544444457899999998888887665
No 336
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=28.36 E-value=98 Score=21.33 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=13.2
Q ss_pred eEEEeecc--chHHHHHHHHHHH
Q 045044 62 TLTFARHS--LGAGVVALLVLIV 82 (122)
Q Consensus 62 ~l~vtGHS--LGGavA~L~~~~l 82 (122)
.|++++|| |+=++..++..+.
T Consensus 3 GIVlVSHs~~lA~gl~~~~~~i~ 25 (124)
T PRK14484 3 GIVIVSHSKKIAEGVKDLIKQMA 25 (124)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhh
Confidence 57778887 6666665555444
No 337
>COG4425 Predicted membrane protein [Function unknown]
Probab=28.28 E-value=65 Score=27.65 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchH
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGA 72 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGG 72 (122)
.++|+.+++.+...+.++=+ ..-=||++-|-|||+
T Consensus 374 ~~aa~aLf~aVy~yw~qLP~-~sRPKLylhG~SLGa 408 (588)
T COG4425 374 ADAARALFEAVYGYWTQLPK-SSRPKLYLHGESLGA 408 (588)
T ss_pred hhHHHHHHHHHHHHHHhCCc-CCCCceEEecccccc
Confidence 35778888888777776532 122489999999995
No 338
>COG1360 MotB Flagellar motor protein [Cell motility and secretion]
Probab=28.22 E-value=88 Score=23.77 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCCeEEEeecc--------------chHHHHHHHHHHHHhhccccCCCCCCceEEEEecCC
Q 045044 50 FLRGLVDRNLNYTLTFARHS--------------LGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPT 105 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHS--------------LGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P 105 (122)
.+-..+...++++|.|+||- |-++-|.-..-+|... +..+..++.+.+||.-
T Consensus 153 ~ia~~l~~~~~~~I~I~GHTDn~p~~~~~~sNWeLS~aRA~~v~~~L~~~----g~~~~~~~~~~G~gd~ 218 (244)
T COG1360 153 KIAKLLADIPNGNIRIEGHTDNVPIKGSFYSNWELSAARAQSVVRVLING----GLVEAKRLSVVGYADT 218 (244)
T ss_pred HHHHHHhhcCCCeEEEEeCCCCCCcCCCCCchHHHHHHHHHHHHHHHHHc----CCCCcceEEEEecccc
Confidence 33334445566699999994 7777887666555442 3356789999999953
No 339
>PRK09330 cell division protein FtsZ; Validated
Probab=28.09 E-value=1.4e+02 Score=24.57 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHh
Q 045044 37 LKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQ 84 (122)
Q Consensus 37 ~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~ 84 (122)
.+..+...++..+.|++.++ +..+++.=|+|||+..+=++..+.+
T Consensus 77 pe~G~~aaee~~e~I~~~l~---~~D~vfI~AGmGGGTGTGaapvIA~ 121 (384)
T PRK09330 77 PEVGRKAAEESREEIREALE---GADMVFITAGMGGGTGTGAAPVVAE 121 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHc---CCCEEEEEecCCCcccHHHHHHHHH
Confidence 34444555555566666654 5788899999999987777765543
No 340
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=27.86 E-value=16 Score=14.42 Aligned_cols=6 Identities=50% Similarity=0.678 Sum_probs=3.0
Q ss_pred eccchH
Q 045044 67 RHSLGA 72 (122)
Q Consensus 67 GHSLGG 72 (122)
|.+|||
T Consensus 1 gf~l~G 6 (10)
T PF08250_consen 1 GFSLGG 6 (10)
T ss_pred Cccccc
Confidence 345554
No 341
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=27.71 E-value=46 Score=26.28 Aligned_cols=17 Identities=18% Similarity=-0.052 Sum_probs=13.7
Q ss_pred HHHhCCCCeEEEeeccc
Q 045044 54 LVDRNLNYTLTFARHSL 70 (122)
Q Consensus 54 ~~~~~p~~~l~vtGHSL 70 (122)
+.++.|+..++|.|||=
T Consensus 226 lA~~v~gIDvIigGHsH 242 (313)
T cd08162 226 LAALLSGVDVIIAGGSN 242 (313)
T ss_pred HHhcCCCCCEEEeCCCC
Confidence 45567899999999983
No 342
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=27.63 E-value=47 Score=25.14 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=15.7
Q ss_pred HHHHHhCCCCeEEEeeccch
Q 045044 52 RGLVDRNLNYTLTFARHSLG 71 (122)
Q Consensus 52 ~~~~~~~p~~~l~vtGHSLG 71 (122)
+++.++.|+..+++.|||=.
T Consensus 199 ~~la~~~~~iDlilgGH~H~ 218 (264)
T cd07411 199 VELAERVPGIDVILSGHTHE 218 (264)
T ss_pred HHHHhcCCCCcEEEeCcccc
Confidence 34556679999999999975
No 343
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=27.44 E-value=80 Score=25.98 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhCCCC-eEEEeeccch
Q 045044 44 FDAKCEFLRGLVDRNLNY-TLTFARHSLG 71 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~-~l~vtGHSLG 71 (122)
++++...|+++.++||+. ++...|.|.-
T Consensus 4 y~em~~~L~~l~~~yP~i~~l~sIG~Sve 32 (392)
T cd03864 4 YDDLVRALYAVQNECPYITRIYSIGRSVE 32 (392)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEeeeccC
Confidence 577889999999999986 7888898854
No 344
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=27.23 E-value=47 Score=25.36 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=12.4
Q ss_pred EEEeeccchHHHHHHHH
Q 045044 63 LTFARHSLGAGVVALLV 79 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~ 79 (122)
-.+.|||+|=-.|+.++
T Consensus 78 ~~v~GhS~GE~aAa~~a 94 (295)
T TIGR03131 78 SAVAGYSVGEYAAAVVA 94 (295)
T ss_pred cEEeecCHHHHHHHHHh
Confidence 36999999976655544
No 345
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=26.63 E-value=1.3e+02 Score=25.77 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=12.5
Q ss_pred CeEEEeeccchHHHH
Q 045044 61 YTLTFARHSLGAGVV 75 (122)
Q Consensus 61 ~~l~vtGHSLGGavA 75 (122)
-+|++.|+|-||+.+
T Consensus 180 ~NVTl~GeSAGa~si 194 (491)
T COG2272 180 QNVTLFGESAGAASI 194 (491)
T ss_pred cceEEeeccchHHHH
Confidence 589999999997643
No 346
>PRK00035 hemH ferrochelatase; Reviewed
Probab=26.41 E-value=1.1e+02 Score=24.06 Aligned_cols=10 Identities=30% Similarity=0.424 Sum_probs=8.9
Q ss_pred CCeEEEeecc
Q 045044 60 NYTLTFARHS 69 (122)
Q Consensus 60 ~~~l~vtGHS 69 (122)
+..|+++|||
T Consensus 189 ~~~llfs~HG 198 (333)
T PRK00035 189 PDRLLFSAHG 198 (333)
T ss_pred CcEEEEecCC
Confidence 4789999998
No 347
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=26.24 E-value=2.4e+02 Score=23.37 Aligned_cols=73 Identities=12% Similarity=0.153 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCe---EEEeeccchHHHHHHHHHHHHhhc--cccCCCCCCceEEEEecCCCcCCHHHHHhc
Q 045044 42 WVFDAKCEFLRGLVDRNLNYT---LTFARHSLGAGVVALLVLIVVQNL--DKFGNIKRNKIRCFAIAPTKCMSLNLAVRY 116 (122)
Q Consensus 42 ~~~~~~~~~l~~~~~~~p~~~---l~vtGHSLGGavA~L~~~~l~~~~--~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~ 116 (122)
.+-.++.+.|+.+...||+++ +.|.=-|.||=+|.=+++.+-.-. .++ ..+..-+..|-|=+.-.++.-..
T Consensus 100 qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i----~~nf~~VaLGDSWISP~D~V~SW 175 (414)
T KOG1283|consen 100 QIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEI----KLNFIGVALGDSWISPEDFVFSW 175 (414)
T ss_pred HHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCce----eecceeEEccCcccChhHhhhcc
Confidence 444556778888888888876 889999999999998887774321 112 24566677787777666665544
Q ss_pred cc
Q 045044 117 EW 118 (122)
Q Consensus 117 ~~ 118 (122)
.+
T Consensus 176 GP 177 (414)
T KOG1283|consen 176 GP 177 (414)
T ss_pred hH
Confidence 43
No 348
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=26.04 E-value=1e+02 Score=25.63 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=22.6
Q ss_pred CCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCC
Q 045044 60 NYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPT 105 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P 105 (122)
.-+|-+.|-|+||-+|.=++. + +.+ +-.-|++.|+|
T Consensus 260 ~~RV~~~G~SfGGy~AvRlA~-l--e~~-------RlkavV~~Ga~ 295 (411)
T PF06500_consen 260 HTRVGAWGFSFGGYYAVRLAA-L--EDP-------RLKAVVALGAP 295 (411)
T ss_dssp EEEEEEEEETHHHHHHHHHHH-H--TTT-------T-SEEEEES--
T ss_pred hhheEEEEeccchHHHHHHHH-h--ccc-------ceeeEeeeCch
Confidence 358999999999999864432 1 211 23456888876
No 349
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=25.49 E-value=45 Score=25.17 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=14.3
Q ss_pred CeEEEeeccchHHHHHHHHHHHHhh
Q 045044 61 YTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 61 ~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
|+|+|+|-+++|..++ +.|++.
T Consensus 2 ~dV~IvGaG~aGl~~A---~~L~~~ 23 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAA---LALARA 23 (356)
T ss_dssp EEEEEE--SHHHHHHH---HHHHHT
T ss_pred ceEEEECCCHHHHHHH---HHHHhc
Confidence 6899999888887654 455544
No 350
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=25.19 E-value=1.9e+02 Score=21.95 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=17.3
Q ss_pred EEEeeccchHHHHHHHHHHHH
Q 045044 63 LTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~~~l~ 83 (122)
-.|.||.+|||+...++-+++
T Consensus 114 Aav~G~a~GgG~~lalacD~~ 134 (272)
T PRK06142 114 AAVQGWCIGGGVDLISACDMR 134 (272)
T ss_pred EEecCccccchHHHHHhCCEE
Confidence 457899999999988887664
No 351
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=24.94 E-value=1.1e+02 Score=19.57 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccc
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSL 70 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSL 70 (122)
....++...+.+|++++++.--..
T Consensus 4 ~~~~i~s~~~~nP~~~~~~~~d~~ 27 (103)
T PF04488_consen 4 FQCSIESWARHNPDYEYILWTDES 27 (103)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCC
Confidence 456788888999999988866553
No 352
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=24.91 E-value=3.7e+02 Score=21.67 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=18.5
Q ss_pred CCeEEEeeccchHHHHHHHHHH
Q 045044 60 NYTLTFARHSLGAGVVALLVLI 81 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~~~ 81 (122)
..+|+++|---||=+.+|++++
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~ 108 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAF 108 (315)
T ss_pred CceEEEECCChHHHHHHHHHHH
Confidence 3799999988887788888877
No 353
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=24.76 E-value=82 Score=25.74 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=20.0
Q ss_pred HHHHHHhC-CCCeEEEeeccchHHHHHHH
Q 045044 51 LRGLVDRN-LNYTLTFARHSLGAGVVALL 78 (122)
Q Consensus 51 l~~~~~~~-p~~~l~vtGHSLGGavA~L~ 78 (122)
+-.++.|+ |+|++..+|-=|||--.+|+
T Consensus 113 iLsCiTKhSpqYkVLmVGR~LGGiaTsLL 141 (454)
T KOG4332|consen 113 ILSCITKHSPQYKVLMVGRVLGGIATSLL 141 (454)
T ss_pred HHHHHhhcCCceEEEeehhhhhhHHHHHH
Confidence 33344444 89999999999998554444
No 354
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=24.75 E-value=1.6e+02 Score=21.89 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=34.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcC
Q 045044 33 HNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCM 108 (122)
Q Consensus 33 H~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~ 108 (122)
+.+++--.....+.+.+.|+++........-.-.+.++|.|+-+... +..... ...+|-+++-|+|..|
T Consensus 81 ~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~--ll~~~~-----~gGkI~~f~sg~pt~G 149 (239)
T cd01468 81 PDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFL--LLKGTF-----AGGRIIVFQGGLPTVG 149 (239)
T ss_pred cCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHH--HHhhcC-----CCceEEEEECCCCCCC
Confidence 34444333333333444444444332221134467888887775433 322210 1357788887888765
No 355
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=24.69 E-value=58 Score=25.70 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=15.3
Q ss_pred EEeeccchHHHHHHHHH
Q 045044 64 TFARHSLGAGVVALLVL 80 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~~ 80 (122)
+|+|-|.||-||++++.
T Consensus 35 ~i~GTStGgiIA~~la~ 51 (312)
T cd07212 35 WIAGTSTGGILALALLH 51 (312)
T ss_pred EEEeeChHHHHHHHHHc
Confidence 78999999999998875
No 356
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=24.68 E-value=51 Score=25.59 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=10.7
Q ss_pred EEEeeccchHHHHHHH
Q 045044 63 LTFARHSLGAGVVALL 78 (122)
Q Consensus 63 l~vtGHSLGGavA~L~ 78 (122)
-.+.|||+|=-.|..+
T Consensus 86 ~~v~GhSlGE~aA~~a 101 (318)
T PF00698_consen 86 DAVIGHSLGEYAALVA 101 (318)
T ss_dssp SEEEESTTHHHHHHHH
T ss_pred ceeeccchhhHHHHHH
Confidence 3578999995544433
No 357
>PHA00447 lysozyme
Probab=24.58 E-value=1.5e+02 Score=20.75 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEeeccchH
Q 045044 44 FDAKCEFLRGLVDRNLNYTLTFARHSLGA 72 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~~l~vtGHSLGG 72 (122)
.+.+...|..+.+++|+++ |.||+=-+
T Consensus 99 ~~al~~Ll~~L~~~~~~~~--I~GHrd~~ 125 (142)
T PHA00447 99 MQSLKSLLVTLKAKYPGAE--IKAHHDVA 125 (142)
T ss_pred HHHHHHHHHHHHHHCCCCE--EEeccCCC
Confidence 3445556666777788775 56997543
No 358
>PRK06667 motB flagellar motor protein MotB; Validated
Probab=24.57 E-value=3.2e+02 Score=20.75 Aligned_cols=51 Identities=6% Similarity=0.048 Sum_probs=29.3
Q ss_pred HHHHHHHhCC--CCeEEEeeccchH----------------HHHHHHHHHHHhhccccCCCCCCceEEEEecC
Q 045044 50 FLRGLVDRNL--NYTLTFARHSLGA----------------GVVALLVLIVVQNLDKFGNIKRNKIRCFAIAP 104 (122)
Q Consensus 50 ~l~~~~~~~p--~~~l~vtGHSLGG----------------avA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~ 104 (122)
.+-+.+..+| +..|.|.||.=-- +-|.-..-.|... +..+..++.+.+||.
T Consensus 147 ~ia~~l~~~~~~~~~i~I~GhTD~~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~----g~~~~~ri~~~G~G~ 215 (252)
T PRK06667 147 KIASFIGFLDLAGRNFRIEGHTDNVDVNPEGPWKSNWELSGARAVNMLEYILNY----GDQSESWFQVSGFAG 215 (252)
T ss_pred HHHHHHHhCCCCCceEEEEEeCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHc----CCCCcceEEEEEECC
Confidence 3444455566 6899999997421 1233222233222 223467899999995
No 359
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=24.57 E-value=83 Score=23.73 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccchH
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSLGA 72 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSLGG 72 (122)
....+.+.++++++ +.+++++||.=..
T Consensus 179 ~~~~~~l~~ll~~~-~v~~vl~GH~H~y 205 (294)
T cd00839 179 EKMRAALEDLFYKY-GVDLVLSGHVHAY 205 (294)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEccceee
Confidence 34566777888877 5889999997653
No 360
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=24.55 E-value=1.2e+02 Score=21.22 Aligned_cols=17 Identities=35% Similarity=0.202 Sum_probs=15.4
Q ss_pred EEeeccchHHHHHHHHH
Q 045044 64 TFARHSLGAGVVALLVL 80 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~~ 80 (122)
.++|=|-|+-+|++++.
T Consensus 31 ~i~GtSaGal~a~~~a~ 47 (175)
T cd07205 31 IVSGTSAGAIVGALYAA 47 (175)
T ss_pred EEEEECHHHHHHHHHHc
Confidence 79999999999998874
No 361
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=24.45 E-value=69 Score=27.40 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCCeEEEeeccchHHHH
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLGAGVV 75 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLGGavA 75 (122)
+.|.+++++||+.+.+++||-=--.++
T Consensus 369 ~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 369 TELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred HHHHHHHhcCCCceEEEECCcCCCccc
Confidence 467777888999999999997654443
No 362
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=24.25 E-value=1.2e+02 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=14.1
Q ss_pred CCCCeEEEeecc--chHHHHHHH
Q 045044 58 NLNYTLTFARHS--LGAGVVALL 78 (122)
Q Consensus 58 ~p~~~l~vtGHS--LGGavA~L~ 78 (122)
..+.+++++|.| .|--+|.|+
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL 56 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLL 56 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHH
T ss_pred CCCCEEEEECCcCCCChHHHHHH
Confidence 367899999999 576666554
No 363
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=24.19 E-value=1.4e+02 Score=22.59 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=28.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHh--CCCCeEEEee
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDR--NLNYTLTFAR 67 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~--~p~~~l~vtG 67 (122)
-|+|-++++....+.+.+.|.+++++ .+++.|+||+
T Consensus 155 GH~~~~~~~~~~ie~~D~~l~~l~~~~~~~~~~liiTa 192 (252)
T PF01676_consen 155 GHRGDPEAYIEAIERIDRFLGRLLEALDKEDDLLIITA 192 (252)
T ss_dssp HTTT-HHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 58998998888888887777777764 3678888886
No 364
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair]
Probab=24.16 E-value=46 Score=27.38 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=25.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
|+.=.++-+.-...++...|++++.. .=+++||||=== |-++.+
T Consensus 268 IT~~~~e~~t~tl~dvq~~l~~~~~~----~TILVGHSLenD---L~aLKl 311 (380)
T KOG2248|consen 268 ITEEDLENSTITLEDVQKELLELISK----NTILVGHSLEND---LKALKL 311 (380)
T ss_pred ccHHHHhcCccCHHHHHHHHHhhcCc----CcEEEeechhhH---HHHHhh
Confidence 45444443333445566666666543 558899999744 455554
No 365
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=24.07 E-value=87 Score=20.83 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=13.2
Q ss_pred HHHHHHHhCCCCeEEEeecc
Q 045044 50 FLRGLVDRNLNYTLTFARHS 69 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHS 69 (122)
.+.+.++++ +.+++++||.
T Consensus 104 ~~~~~l~~~-~~~~~l~GH~ 122 (144)
T cd07400 104 DALKLLAEA-GVDLVLHGHK 122 (144)
T ss_pred HHHHHHHHc-CCCEEEECCC
Confidence 345555554 6899999995
No 366
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=23.99 E-value=73 Score=23.60 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCCeEEEeeccc
Q 045044 49 EFLRGLVDRNLNYTLTFARHSL 70 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSL 70 (122)
+.+.++++++ +-+++|.||.=
T Consensus 199 ~~l~~li~~~-~v~~~i~GH~H 219 (239)
T TIGR03729 199 QHFGQLLVKY-EIKDVIFGHLH 219 (239)
T ss_pred HHHHHHHHHh-CCCEEEECCcc
Confidence 5677777776 67899999963
No 367
>PRK09040 hypothetical protein; Provisional
Probab=23.94 E-value=3.1e+02 Score=20.40 Aligned_cols=60 Identities=8% Similarity=0.031 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEeeccch-----------------HHHHHHHHHHHHhhccccCCCCCCceEEEE
Q 045044 39 ATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLG-----------------AGVVALLVLIVVQNLDKFGNIKRNKIRCFA 101 (122)
Q Consensus 39 aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLG-----------------GavA~L~~~~l~~~~~~~~~~~~~~v~~~t 101 (122)
.++.+.+++.+.|++.+...| ..|.|.||.=- ..-|.-..-.|.. .+++..++.+.+
T Consensus 102 ~~~~~L~~la~~L~~~~~~~~-~~V~IeGHTD~~~~~~~~~~y~~N~~LS~~RA~aV~~~L~~-----~Gi~~~ri~~~G 175 (214)
T PRK09040 102 EGRELLKSLAGPLAAYLRARD-EILMVSGFTDDQPVRAGNRRFADNWELSAQRALTVTRALID-----AGVPASSVFAAA 175 (214)
T ss_pred HHHHHHHHHHHHHHHHhccCC-CeEEEEEEcCCCCccccccccccHHHHHHHHHHHHHHHHHH-----cCCCHHHEEEEE
Confidence 345566666666666655544 35999999731 1122222222221 235678999999
Q ss_pred ecC
Q 045044 102 IAP 104 (122)
Q Consensus 102 fg~ 104 (122)
||.
T Consensus 176 ~G~ 178 (214)
T PRK09040 176 FGS 178 (214)
T ss_pred eCC
Confidence 995
No 368
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=23.72 E-value=98 Score=23.29 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=17.2
Q ss_pred EEEeeccchHHHHHHHHHHHH
Q 045044 63 LTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~~~l~ 83 (122)
-.|.||.+|||+...++-+++
T Consensus 103 aav~G~a~GgG~~lala~D~r 123 (255)
T PRK07260 103 MCVDGAVAGAAANMAVAADFC 123 (255)
T ss_pred EEecCeeehhhHHHHHhCCEE
Confidence 456899999999988887664
No 369
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=23.71 E-value=2e+02 Score=21.25 Aligned_cols=39 Identities=21% Similarity=0.166 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhCCC-CeEEEeeccchHHHHHHHHHHHH
Q 045044 44 FDAKCEFLRGLVDRNLN-YTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~-~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
.......+..+ ..+|- .=-.+.||.+|||....++-+++
T Consensus 76 ~~~~~~l~~~l-~~~~kp~Iaav~G~a~GgG~~lala~D~~ 115 (245)
T PF00378_consen 76 FRRFQELLSRL-ANFPKPTIAAVNGHAVGGGFELALACDFR 115 (245)
T ss_dssp HHHHHHHHHHH-HHSSSEEEEEESSEEETHHHHHHHHSSEE
T ss_pred chhhccccccc-hhhhhheeecccccccccccccccccceE
Confidence 33333433333 34452 22346799999999877776554
No 370
>PRK08349 hypothetical protein; Validated
Probab=23.67 E-value=97 Score=22.39 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.4
Q ss_pred CCCeEEEeeccchHHHHHHH
Q 045044 59 LNYTLTFARHSLGAGVVALL 78 (122)
Q Consensus 59 p~~~l~vtGHSLGGavA~L~ 78 (122)
-++..++|||++|=.....+
T Consensus 104 ~g~~~I~tG~~~~d~a~~~l 123 (198)
T PRK08349 104 IGASAIITGDSLGQVASQTL 123 (198)
T ss_pred cCCCEEEEecCCchHHHHHH
Confidence 47899999999998654433
No 371
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=23.50 E-value=1e+02 Score=21.53 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHh-C-CCCeEEEeeccchHHHH
Q 045044 45 DAKCEFLRGLVDR-N-LNYTLTFARHSLGAGVV 75 (122)
Q Consensus 45 ~~~~~~l~~~~~~-~-p~~~l~vtGHSLGGavA 75 (122)
.++...|++.+++ | |.+..+| |+|.|.-+.
T Consensus 69 kdIA~~IKk~fDkkYG~tWHCIV-Gk~FGs~VT 100 (128)
T PLN03058 69 KRLALALKKEFDSAYGPAWHCIV-GTSFGSYVT 100 (128)
T ss_pred HHHHHHHHHHHhhhhCCceEEEE-CCcEEEEEE
Confidence 3466677666654 3 7788877 999996543
No 372
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=23.20 E-value=1.4e+02 Score=21.18 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCCeEEEeeccch
Q 045044 48 CEFLRGLVDRNLNYTLTFARHSLG 71 (122)
Q Consensus 48 ~~~l~~~~~~~p~~~l~vtGHSLG 71 (122)
.+.+++.++ ..+.+++|+||.=-
T Consensus 178 ~~~~~~~~~-~~~~~~~i~GH~H~ 200 (217)
T cd07398 178 EEAVARLAR-RKGVDGVICGHTHR 200 (217)
T ss_pred HHHHHHHHH-hcCCCEEEECCCCC
Confidence 344444443 36789999999643
No 373
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=23.01 E-value=1.1e+02 Score=24.95 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCC-eEEEeeccchH
Q 045044 44 FDAKCEFLRGLVDRNLNY-TLTFARHSLGA 72 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~-~l~vtGHSLGG 72 (122)
++++...|+++.++||+. ++...|.|.-|
T Consensus 9 y~ei~~~l~~l~~~~P~i~~l~~IG~S~eG 38 (375)
T cd03863 9 FSDMEIFLRRYANEYPSITRLYSVGKSVEL 38 (375)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEcccCCcc
Confidence 567888999999999985 68888888754
No 374
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=23.00 E-value=61 Score=18.49 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCCCeEE
Q 045044 49 EFLRGLVDRNLNYTLT 64 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~ 64 (122)
+.|.+.+++||+|.+.
T Consensus 28 ~~L~~WL~~~P~y~V~ 43 (46)
T PF07533_consen 28 KELEEWLEEHPGYEVA 43 (46)
T ss_dssp CCHHHHHHH-TTEEES
T ss_pred HHHHHHHHHCcCceeC
Confidence 4577788889998763
No 375
>PF03850 Tfb4: Transcription factor Tfb4; InterPro: IPR004600 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p34 subunit.; GO: 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent, 0000439 core TFIIH complex
Probab=22.97 E-value=2.4e+02 Score=22.06 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=37.6
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHHh
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVVQ 84 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~~ 84 (122)
....|+|+.++.+-+.+.+.+++++++-.+...--+-=.|.||++.-+...-|.
T Consensus 79 ~~~~~~y~~f~~v~~~v~~~l~~l~~~~~~~~~~~~~s~LagALS~ALCyINR~ 132 (276)
T PF03850_consen 79 SSDSNKYRQFRNVDETVLEELKKLMSETSESSDSTTSSLLAGALSMALCYINRI 132 (276)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHhhh
Confidence 456789999998888899999998876543333222267888988755554443
No 376
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=22.75 E-value=97 Score=24.32 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.6
Q ss_pred eEEEeeccchHH
Q 045044 62 TLTFARHSLGAG 73 (122)
Q Consensus 62 ~l~vtGHSLGGa 73 (122)
+|++.|||-|-.
T Consensus 108 ~vVL~GhSTGcQ 119 (299)
T KOG4840|consen 108 DVVLVGHSTGCQ 119 (299)
T ss_pred ceEEEecCccch
Confidence 899999999954
No 377
>cd06905 Peptidase_M14-like_8 A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly differe
Probab=22.71 E-value=1.2e+02 Score=24.76 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCCC-eEEEeeccch
Q 045044 44 FDAKCEFLRGLVDRNLNY-TLTFARHSLG 71 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~-~l~vtGHSLG 71 (122)
++++.+.|+++.+++|+. ++...|.|.-
T Consensus 7 y~ei~~~L~~La~~~P~lv~l~~IG~S~E 35 (360)
T cd06905 7 YDELTAALQAWASAYPQLCSLESIGKSYE 35 (360)
T ss_pred HHHHHHHHHHHHHHCCCceEEEEeeecCC
Confidence 567888999998899984 8998999964
No 378
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=22.68 E-value=64 Score=28.86 Aligned_cols=21 Identities=10% Similarity=0.009 Sum_probs=18.2
Q ss_pred CCeEEEeeccchHHHHHHHHH
Q 045044 60 NYTLTFARHSLGAGVVALLVL 80 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~~ 80 (122)
+-+|-++|.|.||.++.+++.
T Consensus 337 nGkVGm~G~SY~G~~~~~aAa 357 (767)
T PRK05371 337 NGKVAMTGKSYLGTLPNAVAT 357 (767)
T ss_pred CCeeEEEEEcHHHHHHHHHHh
Confidence 679999999999999986653
No 379
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=22.54 E-value=3.1e+02 Score=19.99 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=26.8
Q ss_pred eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCC
Q 045044 62 TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTK 106 (122)
Q Consensus 62 ~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~ 106 (122)
.|++-..|.||+......+...++..+.+ .+.++++..-|-+.|
T Consensus 68 ~il~H~FSnGG~~~~~~l~~~~~~~~~~~-~~~~~i~g~I~DS~P 111 (240)
T PF05705_consen 68 PILFHSFSNGGSFLYSQLLEAYQSRKKFG-KLLPRIKGIIFDSCP 111 (240)
T ss_pred CEEEEEEECchHHHHHHHHHHHHhccccc-ccccccceeEEeCCC
Confidence 89999999999887655544333322211 123446666676544
No 380
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C. This subfamily corresponds to the catalytic domain present in prokaryotic and eukaryotic phosphoinositide-specific phospholipase C (PI-PLC), which is a ubiquitous enzyme catalyzing the cleavage of the sn3-phosphodiester bond in the membrane phosphoinositides (phosphatidylinositol, PI; Phosphatidylinositol-4-phosphate, PIP; phosphatidylinositol 4,5-bisphosphate, PIP2) to yield inositol phosphates (inositol monosphosphate, InsP; inositol diphosphate, InsP2; inositol trisphosphate, InsP3) and diacylglycerol (DAG). The higher eukaryotic PI-PLCs (EC 3.1.4.11) have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. They play a critical role in most signal transduction pathways, controlling numerous cellular events, such as cell growth, proliferation, excitation and secretion. These PI-PLCs strictly require Ca2+ for their catalytic a
Probab=22.52 E-value=58 Score=25.23 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=24.3
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEe
Q 045044 32 VHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFA 66 (122)
Q Consensus 32 vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vt 66 (122)
+|-|..-. ...+.++.+.+++++.++|.+-|++.
T Consensus 65 v~HG~~~~-~~~f~dvl~~i~~fl~~~p~e~vIls 98 (274)
T cd00137 65 IYHGPTFL-DIFLKEVIEAIAQFLKKNPPETIIMS 98 (274)
T ss_pred EEECCccc-CcCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 44453222 55677889999999999998887663
No 381
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=22.48 E-value=2e+02 Score=21.52 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=10.7
Q ss_pred CCCCeEEEeeccch
Q 045044 58 NLNYTLTFARHSLG 71 (122)
Q Consensus 58 ~p~~~l~vtGHSLG 71 (122)
.....|++.||+.=
T Consensus 181 ~~~~~Ivl~GrpY~ 194 (221)
T PF09989_consen 181 NGKPAIVLLGRPYN 194 (221)
T ss_pred cCCceEEEEcCCCc
Confidence 35678999999864
No 382
>TIGR02867 spore_II_P stage II sporulation protein P. Stage II sporulation protein P is a protein of the endospore formation program in a number of lineages in the Firmicutes (low-GC Gram-positive bacteria). It is expressed in the mother cell compartment, under control of Sigma-E. SpoIIP, along with SpoIIM and SpoIID, is one of three major proteins involved in engulfment of the forespore by the mother cell. This protein family is named for the single member in Bacillus subtilis, although most sporulating bacteria have two members.
Probab=22.47 E-value=1.6e+02 Score=21.89 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEe
Q 045044 41 RWVFDAKCEFLRGLVDRNLNYTLTFA 66 (122)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~p~~~l~vt 66 (122)
..-|..-.+.++++++++|+.+++|=
T Consensus 63 ~~sY~~Sr~tv~~~l~~~p~i~~viD 88 (196)
T TIGR02867 63 EQSYDRSRETVKKALKENKDLKYIID 88 (196)
T ss_pred HHHHHHHHHHHHHHHHHCCCceEEEE
Confidence 44556667788888888997777654
No 383
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=22.43 E-value=1.5e+02 Score=23.60 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHH-HHHhhccccCCCCCCceEEEEecCCCcCCHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVL-IVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAV 114 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~-~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~ 114 (122)
+..+|+++.+..--|=.++|.==.||..|+.+.+ ++. + ..+--.|+|+-|||.-+..-+
T Consensus 184 tsaAl~~l~ea~lpyIsVLt~PTtGGVsASfA~lGDi~-----i----AEP~AlIGFAGpRVIEQTire 243 (294)
T COG0777 184 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDII-----I----AEPGALIGFAGPRVIEQTIRE 243 (294)
T ss_pred HHHHHHHHHhcCCceEEEecCCCccchhHhHHhccCee-----e----cCcccccccCcchhhhhhhcc
Confidence 5677788777666688999999999999987653 111 1 123346899999997665443
No 384
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=22.37 E-value=72 Score=27.23 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCeEEEeeccchH
Q 045044 49 EFLRGLVDRNLNYTLTFARHSLGA 72 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHSLGG 72 (122)
..|.+++++||+-..+++||-=-.
T Consensus 388 ~eLlaLL~~hPnVla~LsGHvHrn 411 (492)
T TIGR03768 388 TGLVTTLQKYPNLLMWIAGHRHLN 411 (492)
T ss_pred HHHHHHHhcCCCeEEEEcCCcccc
Confidence 478888999999999999997543
No 385
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=22.35 E-value=1.3e+02 Score=22.56 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=28.2
Q ss_pred HHHHHHhCCCCeEEEeecc--chHH-------------HHHHHHHHHHhhccccCCCCCCceEEEEecC
Q 045044 51 LRGLVDRNLNYTLTFARHS--LGAG-------------VVALLVLIVVQNLDKFGNIKRNKIRCFAIAP 104 (122)
Q Consensus 51 l~~~~~~~p~~~l~vtGHS--LGGa-------------vA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~ 104 (122)
+-.++..+|+ .|.|.||. -|.. -|.-..-.|.+. .+++..++.+.+||.
T Consensus 140 ia~~l~~~~~-~I~I~GhTD~~~~~~~~~~~N~~LS~~RA~~V~~~L~~~----~gv~~~ri~~~G~G~ 203 (230)
T PRK06925 140 IGVLLSTIPN-DIKVEGHTDSRPISTYRYPSNWELSAARASSVIRYFTSK----EKLDSSRFIAVGYAD 203 (230)
T ss_pred HHHHHHhCCC-eEEEEEeCCCCCccccCCccHHHHHHHHHHHHHHHHHHc----cCCChHHEEEEeccC
Confidence 4445556687 79999997 3321 222222222211 235567899999996
No 386
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.34 E-value=1.1e+02 Score=24.89 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=21.4
Q ss_pred CCeEEEeeccchHHHHHHHHHHHHhh
Q 045044 60 NYTLTFARHSLGAGVVALLVLIVVQN 85 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~~~l~~~ 85 (122)
.-+|.++|-||.+++|--+-..|.+.
T Consensus 116 a~kvLvvGDslm~gla~gl~~al~t~ 141 (354)
T COG2845 116 ADKVLVVGDSLMQGLAEGLDKALATS 141 (354)
T ss_pred CCEEEEechHHhhhhHHHHHHHhccC
Confidence 35899999999999998777777653
No 387
>PLN02757 sirohydrochlorine ferrochelatase
Probab=22.30 E-value=79 Score=22.42 Aligned_cols=33 Identities=6% Similarity=-0.000 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccch
Q 045044 38 KATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLG 71 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLG 71 (122)
....++.+++-+.+.++.++||+-+++++-| ||
T Consensus 83 ~~G~H~~~DIp~~v~~~~~~~p~~~i~~~~p-LG 115 (154)
T PLN02757 83 SPGRHWQEDIPALTAEAAKEHPGVKYLVTAP-IG 115 (154)
T ss_pred cCCcchHhHHHHHHHHHHHHCCCcEEEECCC-CC
Confidence 3334455667788888888899888877655 66
No 388
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=22.17 E-value=86 Score=23.72 Aligned_cols=19 Identities=5% Similarity=-0.057 Sum_probs=10.8
Q ss_pred HHHHHHHhCCCCeEEEeec
Q 045044 50 FLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGH 68 (122)
.+.++++++++.++++.||
T Consensus 206 ~~~~ll~~~~~V~~v~~GH 224 (267)
T cd07396 206 EVLSILRAYGCVKACISGH 224 (267)
T ss_pred HHHHHHHhCCCEEEEEcCC
Confidence 3444455555556666666
No 389
>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]
Probab=22.07 E-value=2.2e+02 Score=23.47 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=33.6
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHH
Q 045044 31 YVHNGLLKATRWVFDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIV 82 (122)
Q Consensus 31 ~vH~Gf~~aa~~~~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l 82 (122)
.-|| -+.++.+..+..+.++++++-=.+|+|.++ .||+.+...+..+
T Consensus 41 ~SHR--sk~~~~v~~~a~~~lreLl~iPd~Y~Vlfl---qGGat~qf~~~p~ 87 (365)
T COG1932 41 ISHR--SKEFKNVLEEAEKDLRELLNIPDDYKVLFL---QGGATGQFAMAPM 87 (365)
T ss_pred eccc--cHHHHHHHHHHHHHHHHHhCCCCCceEEEE---cCccHHHHHHHHH
Confidence 4677 466777888888899998876558998876 4666666555443
No 390
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=22.04 E-value=2.9e+02 Score=19.41 Aligned_cols=71 Identities=13% Similarity=0.080 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCC-eEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCcCCHHHHHhcccc
Q 045044 45 DAKCEFLRGLVDRNLNY-TLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKCMSLNLAVRYEWI 119 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~-~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v~~~~~a~~~~~~ 119 (122)
+++.+.++++.+ .|+. -|++++.|.||.++..-. +++....+. ..+++|-++.=|...-+...++..|...
T Consensus 25 ~~l~~~l~~a~~-d~~v~~vvl~~~~~gg~~~~~~~--~~~~i~~~~-~~~kpVia~v~G~a~g~g~~la~a~D~i 96 (177)
T cd07014 25 DTTAAQIRDARL-DPKVKAIVLRVNSPGGSVTASEV--IRAELAAAR-AAGKPVVASGGGNAASGGYWISTPANYI 96 (177)
T ss_pred HHHHHHHHHHhc-CCCceEEEEEeeCCCcCHHHHHH--HHHHHHHHH-hCCCCEEEEECCchhHHHHHHHHhCCEE
Confidence 456666666654 3665 488999999998775432 211111110 0123444444334433455666655443
No 391
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.00 E-value=3.2e+02 Score=19.80 Aligned_cols=52 Identities=13% Similarity=0.024 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCeEEEee-ccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCC
Q 045044 47 KCEFLRGLVDRNLNYTLTFAR-HSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTK 106 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtG-HSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~ 106 (122)
..+.++++++++|..+.+++. .++. .+.+- .+.+.... .+..+.+++|+.++
T Consensus 163 ~~~~~~~~l~~~~~~~ai~~~~d~~a--~g~~~--~l~~~g~~----ip~dv~iig~d~~~ 215 (269)
T cd06281 163 GFDATRALLALPDRPTAIIAGGTQVL--VGVLR--ALREAGLR----IPRDLSVISIGDSD 215 (269)
T ss_pred HHHHHHHHHcCCCCCcEEEEcCcHHH--HHHHH--HHHHcCCC----CCcceeEEEecCch
Confidence 345666777666766666654 3332 22221 22222111 13578999998654
No 392
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=21.99 E-value=1.4e+02 Score=22.03 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=17.1
Q ss_pred EEEeeccchHHHHHHHHHHHH
Q 045044 63 LTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~~~l~ 83 (122)
-.|.||-+|||+...++-+++
T Consensus 96 Aav~G~a~GgG~~lal~~D~r 116 (229)
T PRK06213 96 VACTGHAIAKGAFLLLSADYR 116 (229)
T ss_pred EEEcCeeeHHHHHHHHhCCee
Confidence 456899999999988876665
No 393
>PLN02469 hydroxyacylglutathione hydrolase
Probab=21.89 E-value=1.2e+02 Score=23.13 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEeeccchHH
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARHSLGAG 73 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGHSLGGa 73 (122)
++.+.|++.+...|+..++++||-.-..
T Consensus 152 ~~~~Sl~~~l~~Lp~~t~vypGH~yt~~ 179 (258)
T PLN02469 152 QMYQSLCVTLGSLPKPTQVYCGHEYTVK 179 (258)
T ss_pred HHHHHHHHHHHcCCCCeEEEcCCCCchh
Confidence 3444555556667999999999975433
No 394
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=21.88 E-value=2.4e+02 Score=19.74 Aligned_cols=18 Identities=44% Similarity=0.353 Sum_probs=16.0
Q ss_pred EEEeeccchHHHHHHHHH
Q 045044 63 LTFARHSLGAGVVALLVL 80 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~~ 80 (122)
=+++|=|.||-+|++++.
T Consensus 29 d~i~GtSaGai~aa~~a~ 46 (194)
T cd07207 29 KRVAGTSAGAITAALLAL 46 (194)
T ss_pred ceEEEECHHHHHHHHHHc
Confidence 488999999999998886
No 395
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=21.63 E-value=1.3e+02 Score=24.26 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=16.1
Q ss_pred HHHHHHHhCCCCeEEEeeccchHH
Q 045044 50 FLRGLVDRNLNYTLTFARHSLGAG 73 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHSLGGa 73 (122)
...++.++ -++.-++||||+|=.
T Consensus 266 ~a~~~A~~-~g~~~I~tG~~l~d~ 288 (371)
T TIGR00342 266 AASKVAEK-EGCLAIVTGESLGQV 288 (371)
T ss_pred HHHHHHHH-cCCCEEEEccChHhh
Confidence 33344333 579999999999953
No 396
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=21.62 E-value=1.3e+02 Score=23.91 Aligned_cols=17 Identities=41% Similarity=0.309 Sum_probs=15.1
Q ss_pred EEeeccchHHHHHHHHH
Q 045044 64 TFARHSLGAGVVALLVL 80 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~~ 80 (122)
+++|-|.|+.+|++++.
T Consensus 100 ~i~GtSaGAi~aa~~~~ 116 (298)
T cd07206 100 VISGSSAGAIVAALLGT 116 (298)
T ss_pred EEEEEcHHHHHHHHHHc
Confidence 59999999999998874
No 397
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=21.50 E-value=3e+02 Score=19.43 Aligned_cols=13 Identities=8% Similarity=-0.164 Sum_probs=7.8
Q ss_pred CCCeEEEeeccch
Q 045044 59 LNYTLTFARHSLG 71 (122)
Q Consensus 59 p~~~l~vtGHSLG 71 (122)
+++++.+.|=+-+
T Consensus 47 ~~~~ifllG~~~~ 59 (172)
T PF03808_consen 47 RGKRIFLLGGSEE 59 (172)
T ss_pred cCCeEEEEeCCHH
Confidence 3566666666653
No 398
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=21.50 E-value=97 Score=19.68 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=22.9
Q ss_pred ccCCCchhHhHHHHHHHHHHHHH---HHHHHHHHhCCCC
Q 045044 26 KFDGGYVHNGLLKATRWVFDAKC---EFLRGLVDRNLNY 61 (122)
Q Consensus 26 ~~~~g~vH~Gf~~aa~~~~~~~~---~~l~~~~~~~p~~ 61 (122)
.|.+| .|.|.+.|-+.+-+++. +...++++.+|-.
T Consensus 35 ~W~dG-tHqglhsaG~DLs~~~~~~aphg~eil~~~PvV 72 (81)
T COG4892 35 SWGDG-THQGLHSAGKDLSSEFNSCAPHGMEILTSLPVV 72 (81)
T ss_pred ccCCC-ccccccccchhHHHHHhhcCCchhHHHhcCchh
Confidence 34544 49999998887766654 4555566666643
No 399
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=21.47 E-value=76 Score=15.72 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=9.9
Q ss_pred hhHhHHHHHHHHHH
Q 045044 32 VHNGLLKATRWVFD 45 (122)
Q Consensus 32 vH~Gf~~aa~~~~~ 45 (122)
+++|+.++|..+.+
T Consensus 12 ~~~Gy~~tA~~f~~ 25 (27)
T PF08513_consen 12 VENGYKETAKAFAK 25 (27)
T ss_dssp HHCT-HHHHHHHHH
T ss_pred HHCCcHHHHHHHHh
Confidence 68899998886654
No 400
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.44 E-value=3.1e+02 Score=20.14 Aligned_cols=25 Identities=4% Similarity=-0.089 Sum_probs=21.8
Q ss_pred CCCeEEEeeccchHHHHHHHHHHHH
Q 045044 59 LNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 59 p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
.+-+|.++|..=.|.+|..++..|.
T Consensus 44 ~g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 44 AGARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHcC
Confidence 4679999999999999999888875
No 401
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=21.42 E-value=3.6e+02 Score=24.69 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCCeEEEeec------cchHHHHH
Q 045044 47 KCEFLRGLVDRNLNYTLTFARH------SLGAGVVA 76 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGH------SLGGavA~ 76 (122)
+...|.++++++. +++|+|| ++|.++|.
T Consensus 356 ia~~L~elI~~~d--~ViI~gH~nPD~DAlGSalaL 389 (838)
T PRK14538 356 NAQNLVDILKKNP--HCFIMGHNHTDLDSLGSMIAF 389 (838)
T ss_pred HHHHHHHHHhcCC--eEEEEecCCCCchHHHHHHHH
Confidence 4556666665543 8999999 68888763
No 402
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=21.38 E-value=1.2e+02 Score=24.52 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCCC-eEEEeeccchH
Q 045044 44 FDAKCEFLRGLVDRNLNY-TLTFARHSLGA 72 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~-~l~vtGHSLGG 72 (122)
++++.+.|+++.++||+. ++...|.|.-|
T Consensus 4 y~ei~~~l~~l~~~~p~~~~l~~iG~S~eG 33 (372)
T cd03868 4 YEELTDLLHSLAKKYPNIARLHSIGRSVEG 33 (372)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeccccCCC
Confidence 567888999998899985 68888888754
No 403
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.23 E-value=2.1e+02 Score=19.04 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 40 TRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
.....+++...++.+.+.+|+.++++++
T Consensus 59 ~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 86 (157)
T cd01833 59 PDTAPDRLRALIDQMRAANPDVKIIVAT 86 (157)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 3445566777777777778999988875
No 404
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.17 E-value=1.2e+02 Score=25.46 Aligned_cols=23 Identities=4% Similarity=-0.047 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCCCCeEEEee
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
+++...|.++.+.+|+.+|+|||
T Consensus 57 ~k~~~~i~~~~~~~p~~~iiVtG 79 (437)
T COG0621 57 QKVRSAIGELKKLKPDAKIIVTG 79 (437)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeC
Confidence 44566777777777999999987
No 405
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=21.16 E-value=1.5e+02 Score=21.85 Aligned_cols=23 Identities=9% Similarity=-0.115 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCCeEEEeec
Q 045044 46 AKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 46 ~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
++..+|+++...||+.-|.|.|.
T Consensus 137 ~Vl~Ei~eC~kayP~~yIRiigF 159 (176)
T PLN02289 137 QVLKELEEAKKAYPNAFIRIIGF 159 (176)
T ss_pred HHHHHHHHHHHHCCcceEEEEEE
Confidence 46778888889999999999885
No 406
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=21.14 E-value=2.2e+02 Score=21.34 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.2
Q ss_pred EEEeeccchHHHHHHHHHHHH
Q 045044 63 LTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~~~l~ 83 (122)
-.|-||.+|||+...++-+++
T Consensus 103 Aav~G~a~GgG~~lala~D~~ 123 (260)
T PRK07511 103 AAVEGAAAGAGFSLALACDLL 123 (260)
T ss_pred EEECCeeehHHHHHHHhCCEE
Confidence 457899999999988876664
No 407
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=21.09 E-value=2.1e+02 Score=20.57 Aligned_cols=28 Identities=4% Similarity=0.043 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCeEEEee
Q 045044 40 TRWVFDAKCEFLRGLVDRNLNYTLTFAR 67 (122)
Q Consensus 40 a~~~~~~~~~~l~~~~~~~p~~~l~vtG 67 (122)
...+.+.+...++++.+++|+.+|++++
T Consensus 108 ~~~~~~~l~~ii~~l~~~~P~~~Iil~~ 135 (214)
T cd01820 108 AEEIAEGILAIVEEIREKLPNAKILLLG 135 (214)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4445566777777777889999999887
No 408
>PRK09039 hypothetical protein; Validated
Probab=21.08 E-value=1.7e+02 Score=23.48 Aligned_cols=62 Identities=10% Similarity=0.078 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC---CCeEEEeeccch------HH----------HHHHHHHHHHhhccccCCCCCCceE
Q 045044 38 KATRWVFDAKCEFLRGLVDRNL---NYTLTFARHSLG------AG----------VVALLVLIVVQNLDKFGNIKRNKIR 98 (122)
Q Consensus 38 ~aa~~~~~~~~~~l~~~~~~~p---~~~l~vtGHSLG------Ga----------vA~L~~~~l~~~~~~~~~~~~~~v~ 98 (122)
..++...+++.+.|+....++| ++.|.|.||.=- |. -|.-..-.|.. .++|+.++.
T Consensus 237 ~~~~~~L~~ia~~l~~~~~~~p~~i~~~I~I~GHTD~~p~~~~g~~~~N~~LS~~RA~aV~~~Li~-----~Gi~~~ri~ 311 (343)
T PRK09039 237 PEGQAEIAKLAAALIELAKEIPPEINWVLRVDGHTDNVPLSGTGRFRDNWELSSARAISVVKFLIA-----LGVPADRLA 311 (343)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcCCeeEEEEEecCCCCccCCCCcccHHHHHHHHHHHHHHHHHH-----CCCCHHHeE
Confidence 3455566777777777665555 457999999742 22 22222222221 246778899
Q ss_pred EEEecC
Q 045044 99 CFAIAP 104 (122)
Q Consensus 99 ~~tfg~ 104 (122)
+.+||.
T Consensus 312 ~~G~G~ 317 (343)
T PRK09039 312 AAGFGE 317 (343)
T ss_pred EEEeCC
Confidence 999995
No 409
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=21.06 E-value=74 Score=18.02 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhCCCCeEE
Q 045044 47 KCEFLRGLVDRNLNYTLT 64 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~ 64 (122)
....|.+.++.+|+|.+.
T Consensus 24 ~~~~l~~WL~~~p~yev~ 41 (45)
T smart00592 24 KAKDLERWLEENPEYEVA 41 (45)
T ss_pred cHHHHHHHHhcCCCcccC
Confidence 346778889999998764
No 410
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=21.02 E-value=1.1e+02 Score=22.50 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEEeecc
Q 045044 42 WVFDAKCEFLRGLVDRNLNYTLTFARHS 69 (122)
Q Consensus 42 ~~~~~~~~~l~~~~~~~p~~~l~vtGHS 69 (122)
..++.+...++.+.++||.-.-.|+|||
T Consensus 130 aQ~~aL~~L~~~L~~~y~i~~~~IvGH~ 157 (185)
T PRK11789 130 AQYQALAALTRALRAAYPIIAERITGHS 157 (185)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhEEehh
Confidence 3456667788888888886555789997
No 411
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=20.93 E-value=2.8e+02 Score=19.42 Aligned_cols=26 Identities=4% Similarity=0.001 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCCCCeEEEeec
Q 045044 43 VFDAKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 43 ~~~~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
....+.+.|+++.+++|+.+|+++|.
T Consensus 104 ~~~~l~~~i~~ir~~~p~~~Ivv~~~ 129 (204)
T cd04506 104 YQNNLKKIFKEIRKLNPDAPIFLVGL 129 (204)
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 33456677777777789999999985
No 412
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=20.87 E-value=2e+02 Score=19.23 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHh
Q 045044 71 GAGVVALLVLIVVQ 84 (122)
Q Consensus 71 GGavA~L~~~~l~~ 84 (122)
.|+++.+++..|.+
T Consensus 6 ~GaiG~~~a~~L~~ 19 (151)
T PF02558_consen 6 AGAIGSLYAARLAQ 19 (151)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 56778888877754
No 413
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=20.87 E-value=78 Score=23.93 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=16.5
Q ss_pred HHHHhCCCCeEEEeeccchHH
Q 045044 53 GLVDRNLNYTLTFARHSLGAG 73 (122)
Q Consensus 53 ~~~~~~p~~~l~vtGHSLGGa 73 (122)
++.++.|+..+++.||+=..-
T Consensus 188 ~la~~~~~iD~IlgGH~H~~~ 208 (257)
T cd07406 188 RLAREVPEIDLILGGHDHEYI 208 (257)
T ss_pred HHHHhCCCCceEEecccceeE
Confidence 456667999999999987643
No 414
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=20.82 E-value=69 Score=25.25 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=10.4
Q ss_pred EEeeccchHHHHHHH
Q 045044 64 TFARHSLGAGVVALL 78 (122)
Q Consensus 64 ~vtGHSLGGavA~L~ 78 (122)
.++|||+|==.|..+
T Consensus 127 ~~~GHSlGE~aA~~~ 141 (343)
T PLN02752 127 VCAGLSLGEYTALVF 141 (343)
T ss_pred eeeeccHHHHHHHHH
Confidence 479999996444443
No 415
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.80 E-value=2.2e+02 Score=19.51 Aligned_cols=28 Identities=14% Similarity=0.032 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEeec
Q 045044 41 RWVFDAKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
....+.+...++++.+.+|+.+|+++|-
T Consensus 77 ~~~~~~~~~li~~i~~~~~~~~iv~~~~ 104 (189)
T cd01825 77 SEYRQQLREFIKRLRQILPNASILLVGP 104 (189)
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEcC
Confidence 3445667777777777789999998874
No 416
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=20.68 E-value=80 Score=20.84 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCC-CCeEEE------eeccchHH-HHHHHH
Q 045044 48 CEFLRGLVDRNL-NYTLTF------ARHSLGAG-VVALLV 79 (122)
Q Consensus 48 ~~~l~~~~~~~p-~~~l~v------tGHSLGGa-vA~L~~ 79 (122)
...|++++.+.. .-.+.| +||.+|++ +..|+.
T Consensus 63 ~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~~asG~~~l~~ 102 (119)
T PF02801_consen 63 AEAIARVFGDSARQQPVPVGSVKSNIGHTEAASGLLSLAK 102 (119)
T ss_dssp HHHHHHHHGGGGGTSTSEEE-THHHH-B-GGGHHHHHHHH
T ss_pred hhhhhhhhcccccccccceeccccccccccccchHHHHHH
Confidence 456666665432 223444 49998864 333433
No 417
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=20.62 E-value=2.5e+02 Score=19.57 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=15.7
Q ss_pred EEEeeccchHHHHHHHHHHHH
Q 045044 63 LTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 63 l~vtGHSLGGavA~L~~~~l~ 83 (122)
-.+.||..|||....++-+++
T Consensus 98 a~v~G~a~g~G~~la~~~D~~ 118 (195)
T cd06558 98 AAVNGAALGGGLELALACDIR 118 (195)
T ss_pred EEECCeeecHHHHHHHhCCEE
Confidence 346799999998877765553
No 418
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=20.62 E-value=92 Score=23.14 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhC--CCCeEEEeeccch
Q 045044 47 KCEFLRGLVDRN--LNYTLTFARHSLG 71 (122)
Q Consensus 47 ~~~~l~~~~~~~--p~~~l~vtGHSLG 71 (122)
+....++.++++ ..+...-+||++|
T Consensus 138 v~~a~~~~~~~~G~~~~~~~~~GHgiG 164 (228)
T cd01090 138 IAAELNEMYREHDLLRYRTFGYGHSFG 164 (228)
T ss_pred HHHHHHHHHHHcCCCcccccccCcccc
Confidence 334555555553 4555667999998
No 419
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=20.61 E-value=1.2e+02 Score=22.59 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=11.1
Q ss_pred HHHHHHHHhCCCCeEEEeecc
Q 045044 49 EFLRGLVDRNLNYTLTFARHS 69 (122)
Q Consensus 49 ~~l~~~~~~~p~~~l~vtGHS 69 (122)
+.+.++++++. ..++++||.
T Consensus 191 ~~l~~l~~~~~-v~~vl~GH~ 210 (277)
T cd07378 191 DRLLPLLKKYK-VDAYLSGHD 210 (277)
T ss_pred HHHHHHHHHcC-CCEEEeCCc
Confidence 34455555543 566677763
No 420
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=20.58 E-value=2.3e+02 Score=25.67 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=31.7
Q ss_pred CCchhHhHHHHHHHHH--------HHHHHHHHHHHHhC---CCCeEEEeeccchHHHHH
Q 045044 29 GGYVHNGLLKATRWVF--------DAKCEFLRGLVDRN---LNYTLTFARHSLGAGVVA 76 (122)
Q Consensus 29 ~g~vH~Gf~~aa~~~~--------~~~~~~l~~~~~~~---p~~~l~vtGHSLGGavA~ 76 (122)
-|.+|+|. +-=.++. ++..+.|+-+.+++ .-.+|.|-|+|.||=++.
T Consensus 685 RGS~hRGl-kFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSl 742 (867)
T KOG2281|consen 685 RGSAHRGL-KFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSL 742 (867)
T ss_pred CCccccch-hhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHH
Confidence 46789885 2222332 23556777777776 235899999999998764
No 421
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=20.47 E-value=51 Score=28.38 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=17.0
Q ss_pred EEeeccchHHHHHHHHHHHH
Q 045044 64 TFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~~~l~ 83 (122)
+|+|-|.||-||+|++..=.
T Consensus 205 IIsGsS~GaivAsl~~v~~~ 224 (543)
T KOG2214|consen 205 IISGSSAGAIVASLVGVRSN 224 (543)
T ss_pred hhcCCchhHHHHHHHhhcch
Confidence 78999999999999986443
No 422
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=20.45 E-value=1.4e+02 Score=18.96 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhCCCCeEEEeeccchHHHHHHHHHHHH
Q 045044 44 FDAKCEFLRGLVDRNLNYTLTFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 44 ~~~~~~~l~~~~~~~p~~~l~vtGHSLGGavA~L~~~~l~ 83 (122)
..+..........++|-..|- ...+++.|++++++
T Consensus 58 ~~~~~~~~~~~V~e~P~~svg-----iAagvG~llG~Ll~ 92 (94)
T PF05957_consen 58 AREAAEQTEDYVRENPWQSVG-----IAAGVGFLLGLLLR 92 (94)
T ss_pred HHHHHHHHHHHHHHChHHHHH-----HHHHHHHHHHHHHh
Confidence 344556666677788833322 24456667776664
No 423
>PF07997 DUF1694: Protein of unknown function (DUF1694); InterPro: IPR012543 This family contains many hypothetical proteins.; PDB: 2OHW_A.
Probab=20.40 E-value=87 Score=21.42 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCCCeEEEeec
Q 045044 47 KCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 47 ~~~~l~~~~~~~p~~~l~vtGH 68 (122)
+.+.+++.+.++|+++|.+-|+
T Consensus 50 ~~~~~~~~l~~~~~~~l~ing~ 71 (120)
T PF07997_consen 50 IYPEFEQALKDYPNYKLKINGN 71 (120)
T ss_dssp --HHHHHHHHC-SSEEEEEETT
T ss_pred HHHHHHHHHhhCCCeEEEEcCC
Confidence 5677888888899999999986
No 424
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=20.37 E-value=86 Score=21.61 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=23.0
Q ss_pred CCeEEEeeccchHHHHHHHHHHHHhhccccCCCCCCceEEEEecCCCc-CCHH
Q 045044 60 NYTLTFARHSLGAGVVALLVLIVVQNLDKFGNIKRNKIRCFAIAPTKC-MSLN 111 (122)
Q Consensus 60 ~~~l~vtGHSLGGavA~L~~~~l~~~~~~~~~~~~~~v~~~tfg~P~v-~~~~ 111 (122)
||-|=-|=--=|||+|...+++= .-+|.|++.|.. .+++
T Consensus 46 DYY~GACnTGgGgALamAIallG-------------~~~C~Tvs~pg~~~~ee 85 (117)
T PF10941_consen 46 DYYLGACNTGGGGALAMAIALLG-------------YGKCATVSMPGKIPSEE 85 (117)
T ss_pred CEeEeecCCCccHHHHHHHHHhC-------------ccceeEeecCCCCCCHH
Confidence 45555554445777776554322 345999998854 4443
No 425
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=20.33 E-value=2.5e+02 Score=23.69 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCeEEEe---e--ccchHHHHHH
Q 045044 39 ATRWVFDAKCEFLRGLVDRNLNYTLTFA---R--HSLGAGVVAL 77 (122)
Q Consensus 39 aa~~~~~~~~~~l~~~~~~~p~~~l~vt---G--HSLGGavA~L 77 (122)
..+....++.+.++..+.+.++.+|+|+ | .|.|=++|.|
T Consensus 355 ~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaIL 398 (451)
T PF04179_consen 355 DLRKALPKICSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAIL 398 (451)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHH
Confidence 3445556677777777776678898888 6 4455444443
No 426
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=20.28 E-value=82 Score=24.18 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=14.2
Q ss_pred HHHHHhCCCCeEEEeecc
Q 045044 52 RGLVDRNLNYTLTFARHS 69 (122)
Q Consensus 52 ~~~~~~~p~~~l~vtGHS 69 (122)
+++.++.|+..+++.|||
T Consensus 198 ~~la~~~~giD~IiggH~ 215 (281)
T cd07409 198 KEIARKVPGVDVIVGGHS 215 (281)
T ss_pred HHHHHcCCCCcEEEeCCc
Confidence 345566799999999997
No 427
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=20.27 E-value=1.5e+02 Score=21.70 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCCeEEEeeccc
Q 045044 45 DAKCEFLRGLVDRNLNYTLTFARHSL 70 (122)
Q Consensus 45 ~~~~~~l~~~~~~~p~~~l~vtGHSL 70 (122)
+.+.+.++.+.+++|+++++++|..-
T Consensus 209 ~~li~a~~~l~~~~~~~~l~i~G~~~ 234 (365)
T cd03807 209 ATLLRAAALLLKKFPNARLLLVGDGP 234 (365)
T ss_pred HHHHHHHHHHHHhCCCeEEEEecCCc
Confidence 44566777777778999999999743
No 428
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=20.19 E-value=1.1e+02 Score=22.92 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCCeEEEeeccchHHHHHHHH
Q 045044 50 FLRGLVDRNLNYTLTFARHSLGAGVVALLV 79 (122)
Q Consensus 50 ~l~~~~~~~p~~~l~vtGHSLGGavA~L~~ 79 (122)
.-+..+..++.+-||+||-| |++=++|+.
T Consensus 13 ~~r~~~~~~~~~viW~TGLS-GsGKSTiA~ 41 (197)
T COG0529 13 QEREALKGQKGAVIWFTGLS-GSGKSTIAN 41 (197)
T ss_pred HHHHHHhCCCCeEEEeecCC-CCCHHHHHH
Confidence 34445556678999999999 555444443
No 429
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=20.19 E-value=1.1e+02 Score=23.15 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=17.2
Q ss_pred EEeeccchHHHHHHHHHHHH
Q 045044 64 TFARHSLGAGVVALLVLIVV 83 (122)
Q Consensus 64 ~vtGHSLGGavA~L~~~~l~ 83 (122)
.|.||.+|||+...++-+++
T Consensus 95 av~G~a~GgG~~lal~cD~~ 114 (251)
T TIGR03189 95 AVRGQCLGGGLEVAAAGNLM 114 (251)
T ss_pred EecCeeeeHHHHHHHhCCEE
Confidence 67899999999988887765
No 430
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=20.04 E-value=2.2e+02 Score=19.69 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEeec
Q 045044 41 RWVFDAKCEFLRGLVDRNLNYTLTFARH 68 (122)
Q Consensus 41 ~~~~~~~~~~l~~~~~~~p~~~l~vtGH 68 (122)
..+.+.+.+.++++.+++|+.+|++++-
T Consensus 87 ~~~~~~l~~li~~i~~~~~~~~iiv~~~ 114 (191)
T cd01836 87 ARWRKQLAELVDALRAKFPGARVVVTAV 114 (191)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 3455667777777777789999999873
Done!