BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045046
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KS8|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 2.5.
pdb|1KSC|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 5.6.
pdb|1KSD|A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes
Takasagoensis, At Ph 6.5
Length = 433
Score = 257 bits (657), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 163/441 (36%), Positives = 233/441 (52%), Gaps = 46/441 (10%)
Query: 2 SHNYADALTKSILFFEGQRSGKLPQDQRMTWRKDSALNDGADIGVDLTGGYYDAGDNVKF 61
+++Y L S+LF+E QRSG+LP DQ++TWRKDSALND D G DLTGGY+DAGD VKF
Sbjct: 2 AYDYKQVLRDSLLFYEAQRSGRLPADQKVTWRKDSALNDQGDQGQDLTGGYFDAGDFVKF 61
Query: 62 TFPMAFTATVLAWSVLEF--GDSMGPDQHHALNAIRWATDFLMKATNKPDTVYFQVGHGQ 119
FPMA+TATVLAW +++F G S A++WATD+ +KA + Y QVG G
Sbjct: 62 GFPMAYTATVLAWGLIDFEAGYSSAGALDDGRKAVKWATDYFIKAHTSQNEFYGQVGQGD 121
Query: 120 EDHNCWQRPEDMDTPRAVFAATIEKPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLLSRA 179
DH W RPEDM R + +P SD++ SIVF+ D YS LL+ A
Sbjct: 122 ADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHA 181
Query: 180 KKVFEFGHKHRGRYSENYAKPPGAVCPFYCSGGIAEDDLAWGAMWLFKATNYDHYYWNSA 239
+++F+F + +RG+YS++ FY S D+L W A WL++ATN D+ Y N+A
Sbjct: 182 RQLFDFANNYRGKYSDSITDARN----FYASADY-RDELVWAAAWLYRATN-DNTYLNTA 235
Query: 240 VNSSKILNHNLHEFG----WEGKNAGINVLVSTGVN---FKHASLTFL------------ 280
S L +G W+ K +G+ VL++ N +K +++
Sbjct: 236 --ESLYDEFGLQNWGGGLNWDSKVSGVQVLLAKLTNKQAYKDTVQSYVNYLINNQQKTPK 293
Query: 281 ----LVVYSRFLKEANKE---IHCGHVVVKRNRLIEIAKGYVDYMLGNNPMNMSYMVGYG 333
+ ++ AN + + + + + A+ +DY LG+ S++ G+G
Sbjct: 294 GLLYIDMWGTLRHAANAAFIMLEAAELGLSASSYRQFAQTQIDYALGDG--GRSFVCGFG 351
Query: 334 KKFPHKIHHRGASLPSMDKHPAKIPCANNHFFHHSDLN--ELTGAIVGGPFDNDSYVDDR 391
P + HHR +S P PA C N F+ D N L+GA+VGGP ND+YVDDR
Sbjct: 352 SNPPTRPHHRSSSCP-----PAPATCDWNT-FNSPDPNYHVLSGALVGGPDQNDNYVDDR 405
Query: 392 NTVERSEPTTYMNAPFVGLLA 412
+ +E T NA F LA
Sbjct: 406 SDYVHNEVATDYNAGFQSALA 426
>pdb|1JS4|A Chain A, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|1JS4|B Chain B, EndoEXOCELLULASE:CELLOBIOSE FROM THERMOMONOSPORA
pdb|4TF4|A Chain A, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|4TF4|B Chain B, EndoEXOCELLULASE:CELLOPENTAOSE FROM THERMOMONOSPORA
pdb|3TF4|A Chain A, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|3TF4|B Chain B, EndoEXOCELLULASE:CELLOTRIOSE FROM THERMOMONOSPORA
pdb|1TF4|A Chain A, EndoEXOCELLULASE FROM THERMOMONOSPORA
pdb|1TF4|B Chain B, EndoEXOCELLULASE FROM THERMOMONOSPORA
Length = 605
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 167/459 (36%), Positives = 225/459 (49%), Gaps = 75/459 (16%)
Query: 4 NYADALTKSILFFEGQRSGKLPQDQRMTWRKDSALNDGADIGVDLTGGYYDAGDNVKFTF 63
NYA+AL KS+ F+E QRSGKLP++ R++WR DS LNDGAD+G+DLTGG+YDAGD+VKF F
Sbjct: 5 NYAEALQKSMFFYEAQRSGKLPENNRVSWRGDSGLNDGADVGLDLTGGWYDAGDHVKFGF 64
Query: 64 PMAFTATVLAWSVLEF--GDSMGPDQHHALNAIRWATDFLMKATNKPDTVYFQVGHGQED 121
PMAFTAT+LAW +E G + + +RW D+ +KA P+ +Y QVG G D
Sbjct: 65 PMAFTATMLAWGAIESPEGYIRSGQMPYLKDNLRWVNDYFIKAHPSPNVLYVQVGDGDAD 124
Query: 122 HNCWQRPEDMDTPRAVFAATIEKPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLLSRAKK 181
H W E M R F P SDV+ +SIVF D AY+ATL+ AK+
Sbjct: 125 HKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFADDDPAYAATLVQHAKQ 184
Query: 182 VFEFGHKHRGRYSENYAKPPGAVCPFYCSGGIAEDDLAWGAMWLFKATNYDHYYWNS--- 238
++ F +RG YS+ P GA FY S +D+L WGA WL+KAT D Y +
Sbjct: 185 LYTFADTYRGVYSD--CVPAGA---FYNSWSGYQDELVWGAYWLYKATGDDSYLAKAEYE 239
Query: 239 ----AVNSSKILNHNLHEFGWEGKNAGINVLV--------------------STGVNFKH 274
+ L W+ K+ G VL+ + GVN +
Sbjct: 240 YDFLSTEQQTDLRSYRWTIAWDDKSYGTYVLLAKETGKQKYIDDANRWLDYWTVGVNGQR 299
Query: 275 --------------------ASLTFLLVVYSRFLKEANKEIHCGHVVVKRNRLIEIAKGY 314
A+ F+ +VY++ + + V++ R + A
Sbjct: 300 VPYSPGGMAVLDTWGALRYAANTAFVALVYAKVIDDP----------VRKQRYHDFAVRQ 349
Query: 315 VDYMLGNNPMNMSYMVGYGKKFPHKIHHRGASLPSMDKHPAKIPCANNHFFHHSDLNELT 374
++Y LG+NP N SY+VG+G P HHR A D + P N H L
Sbjct: 350 INYALGDNPRNSSYVVGFGNNPPRNPHHRTAHGSWTDSIAS--PAENRHV--------LY 399
Query: 375 GAIVGGPFD-NDSYVDDRNTVERSEPTTYMNAPFVGLLA 412
GA+VGGP ND+Y DDR +E T NA F LA
Sbjct: 400 GALVGGPGSPNDAYTDDRQDYVANEVATDYNAGFSSALA 438
>pdb|2XFG|A Chain A, Reassembly And Co-Crystallization Of A Family 9 Processive
Endoglucanase From Separately Expressed Gh9 And Cbm3c
Modules
Length = 466
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/461 (33%), Positives = 214/461 (46%), Gaps = 80/461 (17%)
Query: 4 NYADALTKSILFFEGQRSGKLPQDQ-RMTWRKDSALNDGADIGVDLTGGYYDAGDNVKFT 62
NY +AL K+I F+E QRSGKL R+ WR DS L+DG D G+DLTGG+YDAGD+VKF
Sbjct: 25 NYGEALQKAIFFYECQRSGKLDSSTLRLNWRGDSGLDDGKDAGIDLTGGWYDAGDHVKFN 84
Query: 63 FPMAFTATVLAWSVLEFGDS--MGPDQHHALNAIRWATDFLMKATNKPDTVYFQVGHGQE 120
PM+++A +L W+V E+ D+ +H LN I+WA D+ +K + D Y+QVG G
Sbjct: 85 LPMSYSAAMLGWAVYEYEDAFKQSGQYNHILNNIKWACDYFIKCHPEKDVYYYQVGDGHA 144
Query: 121 DHNCWQRPEDMDTPRAVFAATIEKPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLLSRAK 180
DH W E M R + P S V SI+FK D YS L AK
Sbjct: 145 DHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFKKVDGEYSKECLKHAK 204
Query: 181 KVFEFGHKHRGRYSENYAKPPGAVCPFYCSGGIAEDDLAWGAMWLFKATNYDHYYWNSAV 240
++FEF + + Y G FY S D+L+W A+WL+ ATN D Y + A
Sbjct: 205 ELFEFADTTKS--DDGYTAANG----FYNSWSGFYDELSWAAVWLYLATN-DSSYLDKAE 257
Query: 241 NSSKILNH----NLHEFG----WEGKNAGINVLV---------------------STGVN 271
+ S + N+ ++ W+ G +L+ +TG N
Sbjct: 258 SYSDKWGYEPQTNIPKYKWAQCWDDVTYGTYLLLARIKNDNGKYKEAIERHLDWWTTGYN 317
Query: 272 -------------------FKHASLT-FLLVVYSRFLKEANKEIHCGHVVVKRNRLIEIA 311
++A+ T FL VYS + + +KE K +E A
Sbjct: 318 GERITYTPKGLAWLDQWGSLRYATTTAFLACVYSDW-ENGDKE--------KAKTYLEFA 368
Query: 312 KGYVDYMLGNNPMNMSYMVGYGKKFPHKIHHRGASLPSMDKHPAKIPCANNHFFHHSDLN 371
+ DY LG+ S++VG+G+ P + HHR A D P + H
Sbjct: 369 RSQADYALGST--GRSFVVGFGENPPKRPHHRTAHGSWADSQME--PPEHRHV------- 417
Query: 372 ELTGAIVGGPFDNDSYVDDRNTVERSEPTTYMNAPFVGLLA 412
L GA+VGGP D+Y DD + +E NA FVGLLA
Sbjct: 418 -LYGALVGGPDSTDNYTDDISNYTCNEVACDYNAGFVGLLA 457
>pdb|1K72|A Chain A, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
pdb|1K72|B Chain B, The X-ray Crystal Structure Of Cel9g Complexed With
Cellotriose
Length = 614
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 207/456 (45%), Gaps = 67/456 (14%)
Query: 1 ASHNYADALTKSILFFEGQRSGKLPQDQRMTWRKDSALNDGADIGVDLTGGYYDAGDNVK 60
++NY +AL KSI+F+E QRSG LP D+R WR DS + DG+D+GVDLTGG+YDAGD+VK
Sbjct: 2 GTYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVK 61
Query: 61 FTFPMAFTATVLAWSVLEFGDSMGPDQH--HALNAIRWATDFLMKATNKPDTVYFQVGHG 118
F PM++T+ +LAWS+ E D+ + ++ I+WA D+ +K P Y+QVG G
Sbjct: 62 FNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDG 121
Query: 119 QEDHNCWQRPEDMDTPRAVFAATIEKPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLLSR 178
+DH+ W E M R F KP S V ++VFK SD Y+ +S
Sbjct: 122 GKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISH 181
Query: 179 AKKVFEFGHKHRGRYSENYAKPPGAVCPFYCSGGIAEDDLAWGAMWLFKATN-------- 230
AK +F+ K + A + DDL+W A+WL+ ATN
Sbjct: 182 AKNLFDMADKAKSDAGYTAASGYYSSS-------SFYDDLSWAAVWLYLATNDSTYLDKA 234
Query: 231 -----------------------YDHYYWNSAVNSSKILNHNLH----EFGWEGKNAGIN 263
+D ++ + + +K+ N L+ E + G+N
Sbjct: 235 ESYVPNWGKEQQTDIIAYKWGQXWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTTGVN 294
Query: 264 VLVSTGVNFKHASLTFLL-------VVYSRFLKEANKEIHCGHVVVKRNRLIEIAKGYVD 316
T V++ L +L FL E G K + + K +D
Sbjct: 295 ---GTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWE-GCTPSKVSVYKDFLKSQID 350
Query: 317 YMLGNNPMNMSYMVGYGKKFPHKIHHRGASLPSMDKHPAKIPCANNHFFHHSDLNELTGA 376
Y LG+ S++VGYG P HHR A D+ + P + H + GA
Sbjct: 351 YALGST--GRSFVVGYGVNPPQHPHHRTAHGSWTDQMTS--PTYHRHTIY--------GA 398
Query: 377 IVGGPFDNDSYVDDRNTVERSEPTTYMNAPFVGLLA 412
+VGGP + D Y D+ N +E NA F G LA
Sbjct: 399 LVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALA 434
>pdb|1GA2|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1GA2|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum Complexed With Cellobiose
pdb|1G87|A Chain A, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1G87|B Chain B, The Crystal Structure Of Endoglucanase 9g From Clostridium
Cellulolyticum
pdb|1KFG|A Chain A, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
pdb|1KFG|B Chain B, The X-Ray Crystal Structure Of Cel9g From Clostridium
Cellulolyticum Complexed With A Thio-Oligosaccharide
Inhibitor
Length = 614
Score = 201 bits (512), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 207/456 (45%), Gaps = 67/456 (14%)
Query: 1 ASHNYADALTKSILFFEGQRSGKLPQDQRMTWRKDSALNDGADIGVDLTGGYYDAGDNVK 60
++NY +AL KSI+F+E QRSG LP D+R WR DS + DG+D+GVDLTGG+YDAGD+VK
Sbjct: 2 GTYNYGEALQKSIMFYEFQRSGDLPADKRDNWRDDSGMKDGSDVGVDLTGGWYDAGDHVK 61
Query: 61 FTFPMAFTATVLAWSVLEFGDSMGPDQH--HALNAIRWATDFLMKATNKPDTVYFQVGHG 118
F PM++T+ +LAWS+ E D+ + ++ I+WA D+ +K P Y+QVG G
Sbjct: 62 FNLPMSYTSAMLAWSLYEDKDAYDKSGQTKYIMDGIKWANDYFIKCNPTPGVYYYQVGDG 121
Query: 119 QEDHNCWQRPEDMDTPRAVFAATIEKPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLLSR 178
+DH+ W E M R F KP S V ++VFK SD Y+ +S
Sbjct: 122 GKDHSWWGPAEVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISH 181
Query: 179 AKKVFEFGHKHRGRYSENYAKPPGAVCPFYCSGGIAEDDLAWGAMWLFKATN-------- 230
AK +F+ K + A + DDL+W A+WL+ ATN
Sbjct: 182 AKNLFDMADKAKSDAGYTAASGYYSSS-------SFYDDLSWAAVWLYLATNDSTYLDKA 234
Query: 231 -----------------------YDHYYWNSAVNSSKILNHNLH----EFGWEGKNAGIN 263
+D ++ + + +K+ N L+ E + G+N
Sbjct: 235 ESYVPNWGKEQQTDIIAYKWGQCWDDVHYGAELLLAKLTNKQLYKDSIEMNLDFWTTGVN 294
Query: 264 VLVSTGVNFKHASLTFLL-------VVYSRFLKEANKEIHCGHVVVKRNRLIEIAKGYVD 316
T V++ L +L FL E G K + + K +D
Sbjct: 295 ---GTRVSYTPKGLAWLFQWGSLRHATTQAFLAGVYAEWE-GCTPSKVSVYKDFLKSQID 350
Query: 317 YMLGNNPMNMSYMVGYGKKFPHKIHHRGASLPSMDKHPAKIPCANNHFFHHSDLNELTGA 376
Y LG+ S++VGYG P HHR A D+ + P + H + GA
Sbjct: 351 YALGST--GRSFVVGYGVNPPQHPHHRTAHGSWTDQMTS--PTYHRHTIY--------GA 398
Query: 377 IVGGPFDNDSYVDDRNTVERSEPTTYMNAPFVGLLA 412
+VGGP + D Y D+ N +E NA F G LA
Sbjct: 399 LVGGPDNADGYTDEINNYVNNEIACDYNAGFTGALA 434
>pdb|4DOD|A Chain A, The Structure Of Cbescii Cela Gh9 Module
pdb|4DOE|A Chain A, The Liganded Structure Of Cbescii Cela Gh9 Module
Length = 475
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 208/462 (45%), Gaps = 78/462 (16%)
Query: 1 ASHNYADALTKSILFFEGQRSGKLPQDQRMTWRKDSALNDGADIGVDLTGGYYDAGDNVK 60
S NY +AL K+I+F+E Q SGKLP R WR DSAL DG D G+DLTGG++DAGD+VK
Sbjct: 24 GSFNYGEALQKAIMFYEFQMSGKLPNWVRNNWRGDSALKDGQDNGLDLTGGWFDAGDHVK 83
Query: 61 FTFPMAFTATVLAWSVLEFGDSM--GPDQHHALNAIRWATDFLMKATNKPDTVYFQVGHG 118
F PM++T T+L+W+V E+ D+ H LN I W D+ +K Y+QVG G
Sbjct: 84 FNLPMSYTGTMLSWAVYEYKDAFVKSGQLEHILNQIEWVNDYFVKCHPSKYVYYYQVGDG 143
Query: 119 QEDHNCWQRPEDMDTPRAVFAATIEKPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLLSR 178
+DH W E M R F T P S V SIV K + +AT L
Sbjct: 144 SKDHAWWGPAEVMQMERPSFKVTQSSPGSTVVAETAASLAAASIVLKDRNPTKAATYLQH 203
Query: 179 AKKVFEFGHKHRGRYSENYAKPPGAVCPFYCSGGIAEDDLAWGAMWLFKATNYDHYYWNS 238
AK+++EF + Y G +Y S D+L+W A+WL+ ATN D Y
Sbjct: 204 AKELYEFAEVTKS--DAGYTAANG----YYNSWSGFYDELSWAAVWLYLATN-DSTYLTK 256
Query: 239 A----VNSSKILNHNLHEFGW------------------EGKNAGINVLVS------TGV 270
A N KI N ++ W GK+ ++ S TG
Sbjct: 257 AESYVQNWPKISGSNTIDYKWAHCWDDVHNGAALLLAKITGKDIYKQIIESHLDYWTTGY 316
Query: 271 N-------------------FKHASLT-FLLVVYSRFLKEANKEIHCGHVVVKRNRLIEI 310
N ++A+ T FL VYS ++ G K+ +
Sbjct: 317 NGERIKYTPKGLAWLDQWGSLRYATTTAFLAFVYSDWV---------GCPSTKKEIYRKF 367
Query: 311 AKGYVDYMLGNNPMNMSYMVGYGKKFPHKIHHRGASLPSMDKHPAKIPCANNHFFHHSDL 370
+ +DY LG+ S++VG+G P + HHR A D IP + H
Sbjct: 368 GESQIDYALGS--AGRSFVVGFGTNPPKRPHHRTAHSSWADSQ--SIPSYHRH------- 416
Query: 371 NELTGAIVGGPFDNDSYVDDRNTVERSEPTTYMNAPFVGLLA 412
L GA+VGGP +DSY DD + +E NA FVG LA
Sbjct: 417 -TLYGALVGGPGSDDSYTDDISNYVNNEVACDYNAGFVGALA 457
>pdb|1IA6|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticum
pdb|1IA7|A Chain A, Crystal Structure Of The Cellulase Cel9m Of C.
Cellulolyticium In Complex With Cellobiose
Length = 441
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 139/447 (31%), Positives = 211/447 (47%), Gaps = 59/447 (13%)
Query: 1 ASHNYADALTKSILFFEGQRSG-KLPQDQRMTWRKDSALNDGADIGVDLTGGYYDAGDNV 59
+H+Y+ AL SI+FF+ + G + ++ WR DG+D+GVDLTGGY+DAGD+V
Sbjct: 2 GTHDYSTALKDSIIFFDANKCGPQAGENNVFDWRGACHTTDGSDVGVDLTGGYHDAGDHV 61
Query: 60 KFTFPMAFTATVLAWSVLEFGDSMGP--DQHHALNAIRWATDFLMKATNKPDTVYFQVGH 117
KF P ++A +L WS+ EF +S + L +++ TD+ +K+ T Y+QVG
Sbjct: 62 KFGLPQGYSAAILGWSLYEFKESFDATGNTTKMLQQLKYFTDYFLKSHPNSTTFYYQVGE 121
Query: 118 GQEDHNCWQRPEDMDTPR-AVFAATIEKPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLL 176
G DH W PE+ R +++ A P+SD+ + +K D AY+ L
Sbjct: 122 GNADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCL 181
Query: 177 SRAKKVFEFGHKHRGRYSENYAKPPGAVCPFYCSGGIAEDDLAWGAMWLFKATNYDHYYW 236
+ AK+++ G ++G G FY + DDLAW A WL+ ATN Y
Sbjct: 182 NAAKELYAMGKANQGV---------GNGQSFYQATSFG-DDLAWAATWLYTATNDSTYIT 231
Query: 237 NSA--VNSSKILNHNLHEFGWEG------KNAGINVLVSTGVNFKHASLTFLLVVYSR-- 286
++ + +N N + W A + + TG ++ F +
Sbjct: 232 DAEQFITLGNTMNENKMQDKWTMCWDDMYVPAALRLAQITGKQIYKDAIEFNFNYWKTQV 291
Query: 287 --------------FLKEANKEIHCGHVVVKRN---RLIEIAKGYVDYMLGNNPMNMSYM 329
L+ A E V K+N L+++AK VDY+LG+NP NMSY+
Sbjct: 292 TTTPGGLKWLSNWGVLRYAAAESMVMLVYCKQNPDQSLLDLAKKQVDYILGDNPANMSYI 351
Query: 330 VGYGKKFPHKIHHRGASLPSM----DKHPAKIPCANNHFFHHSDLNELTGAIVGGPFDND 385
+GYG + HHR A+ + + PAK H LTGA+VGGP ND
Sbjct: 352 IGYGSNWCIHPHHRAANGYTYANGDNAKPAK------HL--------LTGALVGGPDQND 397
Query: 386 SYVDDRNTVERSEPTTYMNAPFVGLLA 412
++DD N + +E NA VG+LA
Sbjct: 398 KFLDDANQYQYTEVALDYNAGLVGVLA 424
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 117/266 (43%), Gaps = 39/266 (14%)
Query: 3 HNYADALTKSILFFEGQRSGK-LPQDQRMTWRKD-------------------------- 35
+NYA AL S+ F++ G + ++ ++WR D
Sbjct: 38 YNYAKALQYSMFFYDANMCGTGVDENSLLSWRGDCHVYDARLPLDSQNTNMSDGFISSNR 97
Query: 36 SALNDGADIGVDLTGGYYDAGDNVKFTFPMAFTATVLAWSVLEFGDSMGPDQH--HALNA 93
S L+ D VD++GG++DAGD+VKF P A+ A+ + W EF D HA
Sbjct: 98 SVLDPDGDGKVDVSGGFHDAGDHVKFGLPEAYAASTVGWGYYEFKDQFRATGQAVHAEVI 157
Query: 94 IRWATDFLMKATNKP---DTVYF--QVGHGQEDHNCWQRPEDMDTPRAVFAATIEKPSSD 148
+R+ D+ M+ T + + V F QVG G DH W PE+ R + T EKP +D
Sbjct: 158 LRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTD 217
Query: 149 VSXXXXXXXXXTSIVFKYSDQAYSATLLSRAKKVFEFGHKHRGRYSENYAKPPGAVCPFY 208
+ + FK +D Y+A L AK +F+F K+ + P G Y
Sbjct: 218 IISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQGEDGPKG-----Y 272
Query: 209 CSGGIAEDDLAWGAMWLFKATNYDHY 234
+DD W A WL+ AT +HY
Sbjct: 273 YGSSKWQDDYCWAAAWLYLATQNEHY 298
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
Query: 311 AKGYVDYMLGNNPMNMSYMVGYGKKFPHKIHHRGAS--LPSMDKHPAKIPCANNHFFHHS 368
A+ +DY+LG NP+N Y+VGY HHR AS + D P K
Sbjct: 421 ARSQMDYLLGKNPLNRCYVVGYSSNSVKYPHHRAASGLKDANDSSPHKYV---------- 470
Query: 369 DLNELTGAIVGGPFDNDSYVDDRNTVERSEPTTYMNAPFVGLLAYFNR 416
L GA+VGGP +D +VD N +E NA FVG A R
Sbjct: 471 ----LYGALVGGPDASDQHVDRTNDYIYNEVAIDYNAAFVGACAGLYR 514
>pdb|3EZ8|A Chain A, Crystal Structure Of Endoglucanase Cel9a From The
Thermoacidophilic Alicyclobacillus Acidocaldarius
pdb|3GZK|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela
pdb|3H2W|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellobiose
pdb|3H3K|A Chain A, Structure Of A. Acidocaldarius Cellulase Cela In Complex
With Cellotetraose
pdb|3RX5|A Chain A, Structure Of Aacel9a In Complex With Cellotriose-Like
Isofagomine
pdb|3RX7|A Chain A, Structure Of Aacel9a In Complex With Cellotetraose-Like
Isofagomine
pdb|3RX8|A Chain A, Structure Of Aacel9a In Complex With Cellobiose-Like
Isofagomine
Length = 537
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 99/459 (21%), Positives = 164/459 (35%), Gaps = 68/459 (14%)
Query: 5 YADALTKSILFFEGQRSGK-LPQDQRMTWRKDSALNDGADI-----GVDLTGGYYDAGDN 58
Y D L + FF+ Q G LP+D+ W + A + + GG++DAGD
Sbjct: 88 YRDVLEAMLRFFDYQLCGVVLPEDEAGPWAHGACHTSDAKVFGTERALACPGGWHDAGDY 147
Query: 59 VKFTFPMAFTATVLAWSVLEFGDSMG-----------PDQHHALNAIRWATDFLMKATNK 107
K+T P A L + F ++ P AL R +L+ +
Sbjct: 148 GKYTVPAAKAVADLLLAHEYFPAALAHVRPMRSVHRAPHLPPALEVAREEIAWLLTMQDP 207
Query: 108 PDTVYFQVGHGQEDHNCWQRPEDMDTPRAVFAATIEKPSSDVSXXXXXXXXXTSIVFKYS 167
+ RPED D P + S + ++V++
Sbjct: 208 ATGGVYHKVTTPSFPPLDTRPEDDDAP-----LVLSPISYAATATFCAAMAHAALVYRPF 262
Query: 168 DQAYSATLLSRAKKVFEFGHKHRGRYSENYAKPPGAVCPFYCSGGIAEDDLAWGAMWLFK 227
D A S+ A++ + + H + + P G + Y + D+L W + L +
Sbjct: 263 DPALSSCCADAARRAYAWLGAHE---MQPFHNPDGILTGEYGDAEL-RDELLWASCALLR 318
Query: 228 ATNYDHYYWNSAVNSSKILNHNLH-EFGWEGKNAGINVLVSTGVNFKHASLTFLLVVYSR 286
T + A +L+ +L E GW A V+ S V SR
Sbjct: 319 MTGDSAW----ARVCEPLLDLDLPWELGW-ADVALYGVMDYLRTPRAAVSDDVRNKVKSR 373
Query: 287 FLKE-----ANKEIHC------------GHVVVKRNRLIE----------------IAKG 313
L+E A E H G +V NR + +A+
Sbjct: 374 LLRELDALAAMAESHPFGIPMRDDDFIWGSNMVLLNRAMAFLLAEGVGVLHPAAHTVAQR 433
Query: 314 YVDYMLGNNPMNMSYMVGYGKKFPHKIHHRGASLPSMDKHPAKIPCANNHFFHHSDLNEL 373
DY+ G NP+ Y+ G+G++ HHR + +D HP H D E+
Sbjct: 434 AADYLFGANPLGQCYVTGFGQRPVRHPHHRPSVADDVD-HPVPGMVVGGPNRHLQD--EI 490
Query: 374 TGAIVGGPFDNDSYVDDRNTVERSEPTTYMNAPFVGLLA 412
A + G ++Y+D +++ +E Y N+P V ++A
Sbjct: 491 ARAQLAGRPAMEAYIDHQDSYSTNEVAVYWNSPAVFVIA 529
>pdb|1UT9|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 609
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 94/448 (20%), Positives = 155/448 (34%), Gaps = 88/448 (19%)
Query: 47 DLTGGYYDAGDNVKFTFPMAFTATVLA-------------WSVLEFGDSMGPDQHHA--- 90
D+TGG+YDAGD+ K+ L W G P+Q++
Sbjct: 169 DVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQNNGYPD 228
Query: 91 -LNAIRWATDFL--MKATNKPDTVYFQVGHGQEDHNCWQR----PEDMDTPRAVFAATIE 143
L+ RW +F M+ T K D + H + W P + PR +
Sbjct: 229 ILDEARWEIEFFKKMQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPV--- 285
Query: 144 KPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLLSRAKKVFEFGHKHRGRYSENYAKPPGA 203
S+ + ++ ++K D ++A L +A+ ++ KH Y+E G
Sbjct: 286 --STAATLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQAALKHPDIYAEYTPGSGGP 343
Query: 204 VCPFYCSGGIAEDDLAWGAMWLFKATNYDHYYWNSAVNSSKILNHNL---HEFGWEGKNA 260
Y + D+ W A L+ T D Y N +NS L G G++
Sbjct: 344 GGGPYNDDYVG-DEFYWAACELYVTTGKDEYK-NYLMNSPHYLEMPAKMGENGGANGEDN 401
Query: 261 GINVLVSTGVNFKHASLTFLLVV------------------------------YSRFLKE 290
G+ + G ++T LV Y +K+
Sbjct: 402 GLWGCFTWGTTQGLGTITLALVENGLPATDIQKARNNIAKAADRWLENIEEQGYRLPIKQ 461
Query: 291 ANKE---IHCGHVVVKRNRLIEIAKGY---------------VDYMLGNNPMNMSYMVGY 332
A E G N++I + Y + Y+LG N M+ SY+ GY
Sbjct: 462 AEDERGGYPWGSNSFILNQMIVMGYAYDFTGDSKYLDGMFDGISYLLGRNAMDQSYVTGY 521
Query: 333 GKKFPHKIHHRGASLPSMDKHPAKIP----CANNHFFHHSDLNELTGAIVGGPFDNDSYV 388
G++ H R + + + PA P N F +N A+ ++
Sbjct: 522 GERPLQNPHDRFWTPQTSKRFPAPPPGIISGGPNSRFEDPTIN---AAVKKDTPPQKCFI 578
Query: 389 DDRNTVERSEPTTYMNAPFVGLLAYFNR 416
D ++ +E T NAPF + AY ++
Sbjct: 579 DHTDSWSTNEITVNWNAPFAWVTAYLDQ 606
>pdb|1RQ5|A Chain A, Structural Basis For The Exocellulase Activity Of The
Cellobiohydrolase Cbha From C. Thermocellum
Length = 610
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 93/448 (20%), Positives = 154/448 (34%), Gaps = 88/448 (19%)
Query: 47 DLTGGYYDAGDNVKFTFPMAFTATVLA-------------WSVLEFGDSMGPDQHHA--- 90
D+TGG+YDAGD+ K+ L W G P+Q++
Sbjct: 169 DVTGGWYDAGDHGKYVVNGGIAVWTLMNMYERAKIRGLDNWGPYRDGGMNIPEQNNGYPD 228
Query: 91 -LNAIRWATDFL--MKATNKPDTVYFQVGHGQEDHNCWQR----PEDMDTPRAVFAATIE 143
L+ RW +F M+ T K D + H + W P + PR +
Sbjct: 229 ILDEARWEIEFFKKMQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPV--- 285
Query: 144 KPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLLSRAKKVFEFGHKHRGRYSENYAKPPGA 203
S+ + ++ ++K D ++A L +A+ ++ KH Y+E G
Sbjct: 286 --STAATLNFAATLAQSARLWKDYDPTFAADCLEKAEIAWQAALKHPDIYAEYTPGSGGP 343
Query: 204 VCPFYCSGGIAEDDLAWGAMWLFKATNYDHYYWNSAVNSSKILNHNL---HEFGWEGKNA 260
Y + D+ W A L+ T D Y N +NS L G G++
Sbjct: 344 GGGPYNDDYVG-DEFYWAACELYVTTGKDEYK-NYLMNSPHYLEMPAKMGENGGANGEDN 401
Query: 261 GINVLVSTGVNFKHASLTFLLVV------------------------------YSRFLKE 290
G+ + G ++T LV Y +K+
Sbjct: 402 GLWGCFTWGTTQGLGTITLALVENGLPATDIQKARNNIAKAADRWLENIEEQGYRLPIKQ 461
Query: 291 ANKE---IHCGHVVVKRNRLIEIAKGY---------------VDYMLGNNPMNMSYMVGY 332
A E G N++I + Y + Y+LG N M+ SY+ GY
Sbjct: 462 AEDERGGYPWGSNSFILNQMIVMGYAYDFTGDSKYLDGMFDGISYLLGRNAMDQSYVTGY 521
Query: 333 GKKFPHKIHHRGASLPSMDKHPAKIP----CANNHFFHHSDLNELTGAIVGGPFDNDSYV 388
G++ H R + + + PA P N F +N A+ ++
Sbjct: 522 GERPLQNPHDRFWTPQTSKRFPAPPPGIISGGPNSRFEDPTIN---AAVKKDTPPQKCFI 578
Query: 389 DDRNTVERSEPTTYMNAPFVGLLAYFNR 416
D ++ ++ T NAPF + AY +
Sbjct: 579 DHTDSWGTNQITVNWNAPFAWVTAYLDE 606
>pdb|2IUU|A Chain A, P. Aeruginosa Ftsk Motor Domain, Hexamer
pdb|2IUU|B Chain B, P. Aeruginosa Ftsk Motor Domain, Hexamer
pdb|2IUU|C Chain C, P. Aeruginosa Ftsk Motor Domain, Hexamer
pdb|2IUU|D Chain D, P. Aeruginosa Ftsk Motor Domain, Hexamer
pdb|2IUU|E Chain E, P. Aeruginosa Ftsk Motor Domain, Hexamer
pdb|2IUU|F Chain F, P. Aeruginosa Ftsk Motor Domain, Hexamer
Length = 491
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 143 EKPSSDVSXXXXXXXXXTSIVFKYSDQAYSATLLSRAKKVFEFGHKHRGRYSENYAKPPG 202
++PS DV T I F+ S + S T+L + GH + PPG
Sbjct: 386 QRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILDQGGAEQLLGH------GDMLYLPPG 439
Query: 203 AVCPFYCSGGIAEDD 217
P G DD
Sbjct: 440 TGLPIRVHGAFVSDD 454
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,339,786
Number of Sequences: 62578
Number of extensions: 625625
Number of successful extensions: 1424
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1369
Number of HSP's gapped (non-prelim): 27
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)