BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045047
MESPQSVVSIFKSLLLLSLRSINLISLLPLASVFLKFIYIARDIHDIGVYHKQDVYATLC
LTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQLLGFT
LVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYASDELQLMKAKPKKRKQCGST
IWKQLKIS

High Scoring Gene Products

Symbol, full name Information P value
AT1G50570 protein from Arabidopsis thaliana 1.7e-43
AT5G55530 protein from Arabidopsis thaliana 4.1e-43
AT5G12300 protein from Arabidopsis thaliana 5.9e-25

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045047
        (188 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008011 - symbol:AT1G50570 "AT1G50570" species...   459  1.7e-43   1
TAIR|locus:2173937 - symbol:AT5G55530 "AT5G55530" species...   437  4.1e-43   2
TAIR|locus:505006598 - symbol:AT5G12300 "AT5G12300" speci...   284  5.9e-25   1


>TAIR|locus:2008011 [details] [associations]
            symbol:AT1G50570 "AT1G50570" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000008 InterPro:IPR008973 Pfam:PF00168
            SMART:SM00239 EMBL:CP002684 SUPFAM:SSF49562 EMBL:AC012561
            UniGene:At.28017 UniGene:At.48298 EMBL:BT028972 EMBL:AK228967
            IPI:IPI00536660 RefSeq:NP_001031166.1 RefSeq:NP_564576.1
            ProteinModelPortal:Q9LPS7 SMR:Q9LPS7 PRIDE:Q9LPS7
            EnsemblPlants:AT1G50570.1 EnsemblPlants:AT1G50570.2 GeneID:841478
            KEGG:ath:AT1G50570 TAIR:At1g50570 InParanoid:Q9LPS7 OMA:DDFASSE
            PhylomeDB:Q9LPS7 ProtClustDB:CLSN2917220 Genevestigator:Q9LPS7
            Uniprot:Q9LPS7
        Length = 388

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 86/131 (65%), Positives = 109/131 (83%)

Query:    37 FIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDS 96
             F++ ARDIH+I +YHKQDVYA LCLT+DPEN+++TKII  GG NPVF+++ Q  VK +D 
Sbjct:    44 FVHQARDIHNICIYHKQDVYAKLCLTNDPENSLSTKIINGGGQNPVFDDTLQFDVKNLDC 103

Query:    97 SLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLS 156
             SLK EIF +SR+K+++EDQLLGF+LVPLSEV++ NGKL+ EFSLSSTD  HSPAGFV+LS
Sbjct:   104 SLKCEIFMMSRVKNYLEDQLLGFSLVPLSEVIVRNGKLEKEFSLSSTDLYHSPAGFVELS 163

Query:   157 LRYASDELQLM 167
             L YA D   +M
Sbjct:   164 LSYAGDSPDVM 174


>TAIR|locus:2173937 [details] [associations]
            symbol:AT5G55530 "AT5G55530" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000008 InterPro:IPR008973 Pfam:PF00168
            SMART:SM00239 EMBL:CP002688 SUPFAM:SSF49562 EMBL:BT020521
            EMBL:BT021091 IPI:IPI00542957 RefSeq:NP_200364.2 RefSeq:NP_974935.1
            RefSeq:NP_974936.1 UniGene:At.22993 ProteinModelPortal:Q5HZ03
            PaxDb:Q5HZ03 PRIDE:Q5HZ03 EnsemblPlants:AT5G55530.1
            EnsemblPlants:AT5G55530.2 EnsemblPlants:AT5G55530.3 GeneID:835647
            KEGG:ath:AT5G55530 eggNOG:NOG251891 OMA:EYFGISC
            ProtClustDB:CLSN2688646 Genevestigator:Q5HZ03 Uniprot:Q5HZ03
        Length = 405

 Score = 437 (158.9 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 81/123 (65%), Positives = 105/123 (85%)

Query:    37 FIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDS 96
             +++ ARDIH+I +YHKQDVYA LCLTSDP+ +V+TKII  GG NPVF+++ +L V+ +D+
Sbjct:    56 YVHQARDIHNICIYHKQDVYAKLCLTSDPDKSVSTKIINGGGRNPVFDDNVKLDVRVLDT 115

Query:    97 SLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLS 156
             SLK EI+ +SR+K+++EDQLLGFTLVP+SE+L  NGKL+ EFSLSSTD  HSPAGFVQLS
Sbjct:   116 SLKCEIYMMSRVKNYLEDQLLGFTLVPMSELLFKNGKLEKEFSLSSTDLYHSPAGFVQLS 175

Query:   157 LRY 159
             L Y
Sbjct:   176 LSY 178

 Score = 35 (17.4 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query:     1 MESPQSVV 8
             M+SPQSVV
Sbjct:     1 MDSPQSVV 8


>TAIR|locus:505006598 [details] [associations]
            symbol:AT5G12300 "AT5G12300" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000008 InterPro:IPR008973 Pfam:PF00168
            SMART:SM00239 EMBL:CP002688 GenomeReviews:BA000015_GR
            SUPFAM:SSF49562 EMBL:AL592312 EMBL:BT012657 EMBL:AK226641
            IPI:IPI00529322 RefSeq:NP_568263.1 UniGene:At.49416
            ProteinModelPortal:Q94CL2 SMR:Q94CL2 EnsemblPlants:AT5G12300.1
            GeneID:831105 KEGG:ath:AT5G12300 TAIR:At5g12300 eggNOG:NOG321261
            HOGENOM:HOG000238664 InParanoid:Q94CL2 OMA:QMVSEYF PhylomeDB:Q94CL2
            ProtClustDB:CLSN2917613 Genevestigator:Q94CL2 Uniprot:Q94CL2
        Length = 374

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 56/130 (43%), Positives = 89/130 (68%)

Query:    31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLK 90
             + V   +++ AR+I++I +Y  QDVYA   LT +P++T++T+II+  G NP FN+   + 
Sbjct:    20 SGVLQVYVHNARNINNICIYDNQDVYAKFSLTYNPDDTISTRIIHRAGKNPEFNQKLMID 79

Query:    91 VKTVDSS---LKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLH 147
             V  +D+    LK EI+ +SR + ++EDQLLGF LVP+S+++     +  ++SLSSTD  H
Sbjct:    80 VTQIDAHAAVLKCEIWMMSRARHYMEDQLLGFALVPISDII-GQDSVTQDYSLSSTDLFH 138

Query:   148 SPAGFVQLSL 157
             SPAG V+L+L
Sbjct:   139 SPAGTVKLTL 148


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      188       166   0.00097  107 3  11 22  0.39    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.57u 0.12s 15.69t   Elapsed:  00:00:01
  Total cpu time:  15.57u 0.12s 15.69t   Elapsed:  00:00:01
  Start:  Fri May 10 23:10:17 2013   End:  Fri May 10 23:10:18 2013

Back to top