BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045047
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 56 YATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQ 115
Y +CL D +N+ T + PVF E ++ +++ ++ + TV F
Sbjct: 57 YVKICLLPDQKNSKQTGV-KRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC 115
Query: 116 LLGFTLVPLSEVLLNNG 132
++G VPL EV L G
Sbjct: 116 VIGKVSVPLCEVDLVKG 132
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 54 DVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE 113
D Y + L D + TK+ + NPVFNE KV + + K+ + V F +
Sbjct: 41 DPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSK 99
Query: 114 DQLLGFTLVPLSEV 127
++G VP++ V
Sbjct: 100 HDIIGEFKVPMNTV 113
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 54 DVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE 113
D Y + L D + TK+ + NPVFNE KV + K+ + V F +
Sbjct: 39 DPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK 97
Query: 114 DQLLGFTLVPLSEV 127
++G VP++ V
Sbjct: 98 HDIIGEFKVPMNTV 111
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 54 DVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE 113
D Y + L D + TK+ + NPVFNE KV + K+ + V F +
Sbjct: 56 DPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK 114
Query: 114 DQLLGFTLVPLSEV 127
++G VP++ V
Sbjct: 115 HDIIGEFKVPMNTV 128
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 30.0 bits (66), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 54 DVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE 113
D Y + L D + TK+ + NPVFNE KV + K+ + V F +
Sbjct: 56 DPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK 114
Query: 114 DQLLGFTLVPLSEV 127
++G VP++ V
Sbjct: 115 HDIIGEFKVPMNTV 128
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 54 DVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE 113
D Y + L D + TK+ + NPVFNE KV + K+ + V F +
Sbjct: 64 DPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK 122
Query: 114 DQLLGFTLVPLSEV 127
++G VP++ V
Sbjct: 123 HDIIGEFKVPMNTV 136
>pdb|2QGS|A Chain A, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
pdb|2QGS|B Chain B, Crystal Structure Of Se1688 Protein From Staphylococcus
Epidermidis. Northeast Structural Genomics Consortium
Target Ser89
Length = 225
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 12/68 (17%)
Query: 45 HDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFT 104
HDI H + VY C + EN T +I E L TVDS L EI
Sbjct: 25 HDIA--HVERVYNNACYIAKRENITDTLVI----------ELSSLLHDTVDSKLTDEILA 72
Query: 105 VSRIKSFV 112
++K F+
Sbjct: 73 YDQLKQFL 80
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 106 SRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDF--LHSPAGFVQLSLRY 159
SR F E Q L P+++V+ N ++TE S DF + P G++ S++Y
Sbjct: 116 SRTDVFNE-QFANEALHPMTKVIFNGLDVNTEVQPLSDDFKQISDPKGYLTYSVKY 170
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 103 FTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKL 134
FT+ F D ++G L+PLS + L+ GK+
Sbjct: 94 FTILSFDRFSRDDIIGEVLIPLSGIELSEGKM 125
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 54 DVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE 113
D Y + L D + TK+ + NP+FNE+ Q V + + + F+V F
Sbjct: 42 DPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSR 100
Query: 114 DQLLG 118
L+G
Sbjct: 101 HDLIG 105
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 54 DVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE 113
D Y + L D + TK+ + NP+FNE+ Q V + + + F+V F
Sbjct: 43 DPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSR 101
Query: 114 DQLLGFTLVPLSEVLLNN 131
L+G +V+L+N
Sbjct: 102 HDLIG-------QVVLDN 112
>pdb|2EX5|A Chain A, Group I Intron-encoded Homing Endonuclease I-ceui
Complexed With Dna
pdb|2EX5|B Chain B, Group I Intron-encoded Homing Endonuclease I-ceui
Complexed With Dna
Length = 207
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 35 LKFIYIARDIHDIG-VYHKQDVYATLCLTSDPENTVTTKII 74
+K +Y+A ++ G + HK ATL LT D ++ K+I
Sbjct: 94 VKVLYLALEVFKTGRIRHKSGSNATLVLTIDNRQSLEEKVI 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,401,204
Number of Sequences: 62578
Number of extensions: 151272
Number of successful extensions: 353
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 14
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)