BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045047
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1
Length = 569
Score = 37.0 bits (84), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 25 ISLLPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFN 84
+ L P+ + +K + A+D+ + + K D YA + + P+ T TK I + NP++N
Sbjct: 258 LELKPVGKLDVKVVQ-AKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTI-SNSLNPIWN 315
Query: 85 ESRQLKVKTVDSS-LKSEIFTVSRIKSFVEDQLLGFTLVPLSEVL 128
E + V+ V + L +F + S QL+G VPL+E++
Sbjct: 316 EHFEFIVEDVSTQHLTVRVFDDEGVGS---SQLIGAAQVPLNELV 357
>sp|A4IJ05|SYT17_XENTR Synaptotagmin-17 OS=Xenopus tropicalis GN=syt17 PE=2 SV=1
Length = 474
Score = 34.7 bits (78), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 56 YATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQ 115
Y +CL D +N+ T + NPVF E +++ +++ ++ + T+ F
Sbjct: 230 YVKICLLPDQKNSKQTGV-KRKTQNPVFEERYTFEIQFLEAQRRTLLLTIVDFDKFSRHC 288
Query: 116 LLGFTLVPLSEVLLNNG 132
++G +PL+EV L G
Sbjct: 289 VIGKVAMPLNEVDLVKG 305
>sp|Q62807|SYT17_RAT Synaptotagmin-17 OS=Rattus norvegicus GN=Syt17 PE=2 SV=1
Length = 474
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 56 YATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQ 115
Y +CL D +N+ T + PVF E ++ +++ ++ + TV F
Sbjct: 230 YVKICLLPDQKNSKQTGV-KRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC 288
Query: 116 LLGFTLVPLSEVLLNNG 132
++G VPL EV L G
Sbjct: 289 VIGKVAVPLCEVDLVKG 305
>sp|Q920M7|SYT17_MOUSE Synaptotagmin-17 OS=Mus musculus GN=Syt17 PE=2 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 56 YATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQ 115
Y +CL D +N+ T + PVF E ++ +++ ++ + TV F
Sbjct: 226 YVKICLLPDQKNSKQTGV-KRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC 284
Query: 116 LLGFTLVPLSEVLLNNG 132
++G VPL EV L G
Sbjct: 285 VIGKVAVPLCEVDLVKG 301
>sp|Q5R8Q5|SYT17_PONAB Synaptotagmin-17 OS=Pongo abelii GN=SYT17 PE=2 SV=1
Length = 474
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 56 YATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQ 115
Y +CL D +N+ T + PVF E ++ +++ ++ + TV F
Sbjct: 230 YVKICLLPDQKNSKQTGV-KRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC 288
Query: 116 LLGFTLVPLSEVLLNNG 132
++G VPL EV L G
Sbjct: 289 VIGKVSVPLCEVDLVKG 305
>sp|P41823|SY65_APLCA Synaptotagmin-1 OS=Aplysia californica GN=SYT1 PE=1 SV=2
Length = 428
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 41 ARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKS 100
A D+ + + D Y + L D + TK+ + NPVFNES KV + K
Sbjct: 177 AADLPGMDMSGTSDPYVKVYLLPDKKKKYETKV-HRKTLNPVFNESFTFKVPYAEVGSKI 235
Query: 101 EIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEF-SLSSTDF---LHSPAGFVQLS 156
F V F + +G VPL+ + L G++ ++ L S D + G + S
Sbjct: 236 LTFAVYDFDRFSKHDQIGQVQVPLNSIDL--GRVVEDWKDLQSPDTESEKENKLGDICFS 293
Query: 157 LRY 159
LRY
Sbjct: 294 LRY 296
>sp|Q9BSW7|SYT17_HUMAN Synaptotagmin-17 OS=Homo sapiens GN=SYT17 PE=1 SV=1
Length = 474
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 56 YATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQ 115
Y +CL D +N+ T + PVF E ++ +++ ++ + TV F
Sbjct: 230 YVKICLLPDQKNSKQTGV-KRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHC 288
Query: 116 LLGFTLVPLSEVLLNNG 132
++G VPL EV L G
Sbjct: 289 VIGKVSVPLCEVDLVKG 305
>sp|Q9NUD9|PIGV_HUMAN GPI mannosyltransferase 2 OS=Homo sapiens GN=PIGV PE=1 SV=1
Length = 493
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 16 LLSLRSINLISLLPLASVFLKFIYIARDIHDIG--VYH--KQDVYATLCLTSDPENTVTT 71
LLSLRS LIS+ L FL F+ A +HD+G V H Q YA L P N
Sbjct: 108 LLSLRSCLLISVASLN--FLFFMLAAVALHDLGCLVLHCPHQSFYAALLFCLSPANV--- 162
Query: 72 KIIYAGGSNPVF 83
+ AG S +F
Sbjct: 163 -FLAAGYSEALF 173
>sp|Q54WS5|ROCO6_DICDI Probable serine/threonine-protein kinase roco6 OS=Dictyostelium
discoideum GN=roco6 PE=3 SV=1
Length = 2147
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 74 IYAGGSNPVFNESRQLKVKTVD-----SSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVL 128
IY N +QL+V D S + EI +S +K LLGFTL P + V+
Sbjct: 1370 IYRANLNDTMVAVKQLEVVGEDAPRIFSEFRREIHVMSDLKHSNVVNLLGFTLSPFTMVM 1429
Query: 129 --LNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYA 160
++ G L FLHSP G QL+ +A
Sbjct: 1430 EYIDCGDLHK--------FLHSPIG-DQLNGNWA 1454
>sp|P34693|SYT1_CAEEL Synaptotagmin-1 OS=Caenorhabditis elegans GN=snt-1 PE=2 SV=1
Length = 441
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 80 NPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLN 130
NPVFNE+ KV + + K+ +F + F + +G L+PL ++ L
Sbjct: 221 NPVFNETFIFKVAFNEITAKTLVFAIYDFDRFSKHDQIGQVLIPLGKIDLG 271
>sp|B1N0C1|CINA_LEUCK Putative competence-damage inducible protein OS=Leuconostoc citreum
(strain KM20) GN=cinA PE=3 SV=1
Length = 417
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 39 YIARDIHDIGV--YHKQ-------DVYATLCLTSDPENTVTTKIIYAGGSNPVFNE-SRQ 88
YIAR +HD+G+ YH+ D+ TL L + + II GG P ++ ++Q
Sbjct: 24 YIARALHDMGIESYHQSIVGGNAADILTTLRLAAHRSDL----IILIGGLGPAVDDLTKQ 79
Query: 89 LKVKTVDSSLKSEIFTVSRIKSF 111
+ + ++SSL + + ++K +
Sbjct: 80 VVSQFINSSLIPDTEALRKLKKW 102
>sp|Q9ESD7|DYSF_MOUSE Dysferlin OS=Mus musculus GN=Dysf PE=1 SV=3
Length = 2090
Score = 30.8 bits (68), Expect = 5.5, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 37 FIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDS 96
FI A ++H D+ C TK+I NPV+NE + +K +
Sbjct: 5 FILFAENVHT----PDSDISDAYCSAVFAGVKKRTKVI-KNSVNPVWNEGFEWDLKGIPL 59
Query: 97 SLKSEIFTVSRI-KSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAG 151
SE+ V + ++ ++ LG +PL EVL L F+ D P G
Sbjct: 60 DQSSELLVVVKDHETMGRNRFLGEAKIPLQEVLATP-SLSASFNAPLLDAKQQPTG 114
>sp|P50232|SYT4_RAT Synaptotagmin-4 OS=Rattus norvegicus GN=Syt4 PE=1 SV=1
Length = 425
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 54 DVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEI---FTVSRIKS 110
D Y + + + ++ V T+++ +PVF+E+ V E+ FTV
Sbjct: 191 DPYIKMTILPEKKHKVKTRVLRKT-LDPVFDET--FTFYGVPYPHIQELSLHFTVLSFDR 247
Query: 111 FVEDQLLGFTLVPLSEVLLNNGKL 134
F D ++G LVPLS + L++GK+
Sbjct: 248 FSRDDVIGEVLVPLSGIELSDGKM 271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,884,258
Number of Sequences: 539616
Number of extensions: 2193423
Number of successful extensions: 5336
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 5327
Number of HSP's gapped (non-prelim): 40
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)