Query 045047
Match_columns 188
No_of_seqs 127 out of 158
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:21:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045047.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045047hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04016 C2_Tollip C2 domain pr 100.0 2.8E-29 6E-34 195.2 13.3 119 31-159 1-121 (121)
2 cd08681 C2_fungal_Inn1p-like C 99.9 1.6E-26 3.5E-31 173.5 12.8 117 32-159 1-118 (118)
3 cd04051 C2_SRC2_like C2 domain 99.9 2.2E-25 4.7E-30 169.2 11.5 115 33-155 1-125 (125)
4 cd04019 C2C_MCTP_PRT_plant C2 99.9 3E-23 6.5E-28 165.9 13.4 123 33-161 1-133 (150)
5 cd04044 C2A_Tricalbin-like C2 99.9 4.1E-23 9E-28 154.9 12.6 122 31-161 1-124 (124)
6 cd04022 C2A_MCTP_PRT_plant C2 99.9 7.5E-23 1.6E-27 156.5 12.9 119 33-160 1-126 (127)
7 cd08682 C2_Rab11-FIP_classI C2 99.9 8.5E-23 1.8E-27 156.1 12.7 117 34-157 1-125 (126)
8 cd08377 C2C_MCTP_PRT C2 domain 99.9 1.4E-22 2.9E-27 151.8 13.5 119 32-160 1-119 (119)
9 cd04042 C2A_MCTP_PRT C2 domain 99.9 6.2E-22 1.3E-26 150.1 13.6 120 34-161 2-121 (121)
10 cd04033 C2_NEDD4_NEDD4L C2 dom 99.9 6E-22 1.3E-26 151.5 13.6 123 33-159 1-132 (133)
11 cd08379 C2D_MCTP_PRT_plant C2 99.9 2.7E-22 5.9E-27 157.1 11.7 118 33-155 1-125 (126)
12 cd04015 C2_plant_PLD C2 domain 99.9 6.8E-22 1.5E-26 158.9 13.9 123 30-160 5-158 (158)
13 cd04036 C2_cPLA2 C2 domain pre 99.9 8.6E-22 1.9E-26 148.9 12.7 115 34-159 2-117 (119)
14 cd04046 C2_Calpain C2 domain p 99.9 1.8E-21 3.9E-26 149.5 14.0 121 31-162 2-124 (126)
15 KOG1030 Predicted Ca2+-depende 99.9 3.7E-22 8.1E-27 164.4 10.7 95 28-129 2-96 (168)
16 cd04049 C2_putative_Elicitor-r 99.9 8.7E-22 1.9E-26 149.5 11.4 104 32-142 1-108 (124)
17 cd08375 C2_Intersectin C2 doma 99.9 1.8E-21 4E-26 152.8 13.6 120 28-159 11-135 (136)
18 cd08400 C2_Ras_p21A1 C2 domain 99.9 5.8E-21 1.2E-25 147.2 14.2 121 30-161 2-124 (126)
19 cd04054 C2A_Rasal1_RasA4 C2 do 99.9 7.6E-21 1.6E-25 145.1 13.5 120 33-158 1-120 (121)
20 cd04024 C2A_Synaptotagmin-like 99.9 6.6E-21 1.4E-25 144.0 12.8 121 32-159 1-128 (128)
21 cd08678 C2_C21orf25-like C2 do 99.9 1.5E-20 3.2E-25 143.9 14.2 121 34-162 1-122 (126)
22 cd08378 C2B_MCTP_PRT_plant C2 99.9 7.7E-21 1.7E-25 146.0 12.5 115 33-160 1-120 (121)
23 cd08394 C2A_Munc13 C2 domain f 99.9 5.4E-21 1.2E-25 151.3 11.1 101 31-143 1-102 (127)
24 cd08382 C2_Smurf-like C2 domai 99.9 1.6E-20 3.5E-25 143.7 13.0 118 34-158 2-123 (123)
25 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.3E-20 2.9E-25 141.0 12.3 115 33-161 1-116 (116)
26 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.5E-20 3.3E-25 140.5 12.5 114 32-159 1-121 (121)
27 cd04014 C2_PKC_epsilon C2 doma 99.8 3.8E-20 8.2E-25 142.4 14.0 119 29-161 1-130 (132)
28 cd08395 C2C_Munc13 C2 domain t 99.8 2.8E-20 6.1E-25 144.6 12.5 104 33-143 1-113 (120)
29 cd08373 C2A_Ferlin C2 domain f 99.8 3.5E-20 7.6E-25 141.5 12.1 115 38-163 2-119 (127)
30 cd04050 C2B_Synaptotagmin-like 99.8 2.2E-20 4.8E-25 138.9 10.5 101 33-143 1-103 (105)
31 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 7.4E-20 1.6E-24 140.5 13.7 119 34-159 2-121 (121)
32 cd04045 C2C_Tricalbin-like C2 99.8 1.2E-19 2.6E-24 139.2 12.1 105 32-144 1-105 (120)
33 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1.5E-19 3.3E-24 137.1 12.4 116 34-157 2-122 (123)
34 cd04041 C2A_fungal C2 domain f 99.8 1.1E-19 2.4E-24 136.6 10.8 94 32-129 1-99 (111)
35 cd04027 C2B_Munc13 C2 domain s 99.8 3E-19 6.6E-24 137.3 12.7 118 33-157 2-127 (127)
36 cd04043 C2_Munc13_fungal C2 do 99.8 5.5E-19 1.2E-23 134.0 13.5 118 33-161 2-122 (126)
37 cd08381 C2B_PI3K_class_II C2 d 99.8 1.8E-19 4E-24 138.5 10.8 104 31-140 12-121 (122)
38 cd08385 C2A_Synaptotagmin-1-5- 99.8 2.6E-19 5.6E-24 135.7 11.0 107 30-141 14-123 (124)
39 cd08685 C2_RGS-like C2 domain 99.8 3.9E-19 8.5E-24 136.5 10.7 105 31-140 11-119 (119)
40 cd08521 C2A_SLP C2 domain firs 99.8 4.8E-19 1E-23 133.2 10.8 106 30-140 12-123 (123)
41 cd08383 C2A_RasGAP C2 domain ( 99.8 7.3E-19 1.6E-23 130.9 11.4 115 34-159 2-117 (117)
42 cd04039 C2_PSD C2 domain prese 99.8 7.4E-19 1.6E-23 133.2 11.5 92 32-130 1-98 (108)
43 cd04040 C2D_Tricalbin-like C2 99.8 9.4E-19 2E-23 130.5 11.8 113 34-155 1-114 (115)
44 cd08387 C2A_Synaptotagmin-8 C2 99.8 6.9E-19 1.5E-23 133.6 10.9 108 30-142 14-124 (124)
45 cd08691 C2_NEDL1-like C2 domai 99.8 2.1E-18 4.6E-23 136.7 14.0 122 33-157 2-136 (137)
46 cd04029 C2A_SLP-4_5 C2 domain 99.8 1.1E-18 2.4E-23 134.7 11.4 108 29-141 12-125 (125)
47 cd08392 C2A_SLP-3 C2 domain fi 99.8 1.2E-18 2.5E-23 135.8 10.6 108 30-141 13-128 (128)
48 PLN03008 Phospholipase D delta 99.8 1.8E-18 3.8E-23 169.7 14.3 146 30-184 12-216 (868)
49 cd00275 C2_PLC_like C2 domain 99.8 7.3E-18 1.6E-22 127.1 14.5 119 33-159 3-127 (128)
50 cd08688 C2_KIAA0528-like C2 do 99.8 1.3E-18 2.8E-23 130.6 10.3 102 34-142 1-109 (110)
51 cd04017 C2D_Ferlin C2 domain f 99.8 4.2E-18 9.1E-23 132.2 12.9 119 33-161 2-133 (135)
52 cd04030 C2C_KIAA1228 C2 domain 99.8 2.3E-18 5.1E-23 130.4 11.1 106 30-140 14-126 (127)
53 cd04021 C2_E3_ubiquitin_ligase 99.8 6.9E-18 1.5E-22 129.8 13.3 117 33-157 3-124 (125)
54 cd04052 C2B_Tricalbin-like C2 99.8 2.9E-18 6.3E-23 129.1 10.7 104 46-161 6-110 (111)
55 cd04031 C2A_RIM1alpha C2 domai 99.8 4.9E-18 1.1E-22 128.1 10.6 105 30-140 14-124 (125)
56 cd04028 C2B_RIM1alpha C2 domai 99.8 7E-18 1.5E-22 135.5 11.9 109 31-143 28-139 (146)
57 cd04018 C2C_Ferlin C2 domain t 99.8 6E-18 1.3E-22 136.3 11.3 101 33-142 1-125 (151)
58 cd08393 C2A_SLP-1_2 C2 domain 99.8 6.9E-18 1.5E-22 129.8 10.9 106 30-140 13-124 (125)
59 cd08389 C2A_Synaptotagmin-14_1 99.8 6.4E-18 1.4E-22 130.1 9.8 106 30-141 14-123 (124)
60 cd08676 C2A_Munc13-like C2 dom 99.7 1.3E-17 2.7E-22 134.8 11.6 105 26-140 22-153 (153)
61 cd08390 C2A_Synaptotagmin-15-1 99.7 1.6E-17 3.5E-22 125.2 11.1 106 30-140 12-121 (123)
62 cd04038 C2_ArfGAP C2 domain pr 99.7 1E-17 2.2E-22 133.8 10.3 90 31-129 1-91 (145)
63 cd08388 C2A_Synaptotagmin-4-11 99.7 1E-17 2.2E-22 129.8 9.7 94 31-128 15-113 (128)
64 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.5E-17 3.2E-22 126.0 10.2 106 30-140 14-123 (125)
65 cd04010 C2B_RasA3 C2 domain se 99.7 1.5E-17 3.2E-22 133.4 9.9 103 34-143 2-123 (148)
66 cd08680 C2_Kibra C2 domain fou 99.7 2.1E-17 4.6E-22 128.7 10.0 107 30-140 12-124 (124)
67 cd04011 C2B_Ferlin C2 domain s 99.7 2.5E-17 5.5E-22 123.3 9.9 100 32-142 4-110 (111)
68 cd04032 C2_Perforin C2 domain 99.7 3E-17 6.4E-22 128.8 9.9 94 27-128 23-118 (127)
69 cd08675 C2B_RasGAP C2 domain s 99.7 4.4E-17 9.4E-22 127.9 10.2 105 34-144 1-122 (137)
70 cd08677 C2A_Synaptotagmin-13 C 99.7 3.7E-17 7.9E-22 127.8 9.5 92 30-128 12-107 (118)
71 cd04009 C2B_Munc13-like C2 dom 99.7 6.2E-17 1.3E-21 125.3 10.3 94 31-128 15-117 (133)
72 cd00276 C2B_Synaptotagmin C2 d 99.7 1.6E-17 3.4E-22 126.1 6.2 107 30-143 12-123 (134)
73 cd04013 C2_SynGAP_like C2 doma 99.7 3.6E-16 7.8E-21 125.9 14.1 129 24-162 3-141 (146)
74 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.2E-16 2.6E-21 122.6 9.4 106 30-142 11-121 (133)
75 cd08405 C2B_Synaptotagmin-7 C2 99.7 9.1E-17 2E-21 124.2 8.5 106 30-142 13-123 (136)
76 cd04026 C2_PKC_alpha_gamma C2 99.7 4E-16 8.7E-21 119.4 11.0 107 32-144 13-123 (131)
77 cd08403 C2B_Synaptotagmin-3-5- 99.7 1.9E-16 4.1E-21 122.1 9.0 107 30-143 12-123 (134)
78 cd04048 C2A_Copine C2 domain f 99.7 7.1E-16 1.5E-20 116.9 11.8 103 37-141 5-113 (120)
79 cd04035 C2A_Rabphilin_Doc2 C2 99.7 4.6E-16 1E-20 117.9 10.2 94 31-129 14-113 (123)
80 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 4E-16 8.6E-21 126.1 10.3 111 27-142 22-138 (162)
81 cd08402 C2B_Synaptotagmin-1 C2 99.7 2.6E-16 5.7E-21 121.6 8.6 107 30-143 13-124 (136)
82 cd04037 C2E_Ferlin C2 domain f 99.7 4.7E-16 1E-20 119.5 9.3 91 33-128 1-92 (124)
83 cd08686 C2_ABR C2 domain in th 99.7 1.6E-15 3.5E-20 118.8 11.7 111 34-159 1-118 (118)
84 cd08409 C2B_Synaptotagmin-15 C 99.6 7.8E-16 1.7E-20 120.5 9.4 105 31-142 14-124 (137)
85 cd08404 C2B_Synaptotagmin-4 C2 99.6 8.6E-16 1.9E-20 118.9 9.5 107 30-143 13-124 (136)
86 PLN03200 cellulose synthase-in 99.6 7.3E-16 1.6E-20 161.9 11.7 120 28-160 1976-2100(2102)
87 PF00168 C2: C2 domain; Inter 99.6 1.4E-15 3.1E-20 104.8 9.0 84 34-121 1-85 (85)
88 cd08690 C2_Freud-1 C2 domain f 99.6 5.7E-15 1.2E-19 120.0 13.4 122 33-161 3-138 (155)
89 cd08410 C2B_Synaptotagmin-17 C 99.6 9.8E-16 2.1E-20 119.3 8.4 108 30-143 12-124 (135)
90 cd08406 C2B_Synaptotagmin-12 C 99.6 2.8E-15 6E-20 118.4 9.5 92 31-126 14-110 (136)
91 cd04047 C2B_Copine C2 domain s 99.6 3.4E-15 7.4E-20 110.9 9.2 89 36-129 4-100 (110)
92 cd08408 C2B_Synaptotagmin-14_1 99.6 5.5E-15 1.2E-19 116.5 9.2 107 30-142 13-125 (138)
93 cd08407 C2B_Synaptotagmin-13 C 99.6 6.9E-15 1.5E-19 116.9 9.3 93 30-126 13-112 (138)
94 PLN02270 phospholipase D alpha 99.6 2.8E-14 6E-19 139.9 14.7 146 30-184 6-186 (808)
95 cd08692 C2B_Tac2-N C2 domain s 99.5 1.6E-13 3.4E-18 109.6 9.9 96 30-127 12-110 (135)
96 smart00239 C2 Protein kinase C 99.5 4E-13 8.7E-18 93.4 10.3 93 33-129 1-94 (101)
97 cd00030 C2 C2 domain. The C2 d 99.5 5.7E-13 1.2E-17 91.4 10.6 101 34-140 1-102 (102)
98 KOG1028 Ca2+-dependent phospho 99.4 4E-12 8.6E-17 117.2 12.4 128 30-162 165-296 (421)
99 cd08689 C2_fungal_Pkc1p C2 dom 99.3 2.9E-12 6.3E-17 99.5 7.3 85 34-129 1-88 (109)
100 PLN02952 phosphoinositide phos 99.3 6.1E-11 1.3E-15 113.9 13.4 119 31-160 469-597 (599)
101 PLN02223 phosphoinositide phos 99.2 1.1E-10 2.4E-15 110.9 12.8 119 30-159 407-534 (537)
102 PLN02352 phospholipase D epsil 99.2 1.7E-10 3.6E-15 113.2 13.6 137 30-184 8-168 (758)
103 COG5038 Ca2+-dependent lipid-b 99.2 1.7E-10 3.6E-15 116.4 13.2 128 27-163 431-560 (1227)
104 cd08374 C2F_Ferlin C2 domain s 99.2 2.2E-10 4.7E-15 91.3 9.2 92 34-129 2-123 (133)
105 KOG0696 Serine/threonine prote 99.1 3.7E-11 7.9E-16 112.6 4.6 108 31-144 179-290 (683)
106 KOG1011 Neurotransmitter relea 99.1 8E-11 1.7E-15 114.2 7.0 122 30-159 293-423 (1283)
107 PLN02228 Phosphoinositide phos 99.1 1.1E-09 2.5E-14 104.6 13.6 120 31-159 430-560 (567)
108 PLN02222 phosphoinositide phos 99.0 3.5E-09 7.7E-14 101.6 13.6 104 31-143 451-564 (581)
109 PLN02230 phosphoinositide phos 99.0 2.3E-09 5E-14 103.1 12.2 105 30-143 467-581 (598)
110 COG5038 Ca2+-dependent lipid-b 98.9 7.9E-09 1.7E-13 104.6 9.5 126 28-161 1036-1162(1227)
111 KOG0169 Phosphoinositide-speci 98.7 6.5E-08 1.4E-12 94.7 11.1 103 33-143 617-727 (746)
112 KOG2059 Ras GTPase-activating 98.5 8.7E-07 1.9E-11 86.6 10.1 124 32-163 5-128 (800)
113 KOG1028 Ca2+-dependent phospho 98.4 1.2E-06 2.6E-11 81.1 9.6 93 30-126 296-393 (421)
114 KOG1264 Phospholipase C [Lipid 98.3 2.8E-06 6.1E-11 84.6 9.3 93 32-129 1065-1162(1267)
115 KOG1031 Predicted Ca2+-depende 98.2 9.2E-06 2E-10 79.0 9.5 120 31-160 2-136 (1169)
116 KOG1328 Synaptic vesicle prote 98.1 6.4E-07 1.4E-11 88.2 -0.4 125 34-161 116-302 (1103)
117 KOG0905 Phosphoinositide 3-kin 97.9 8.7E-06 1.9E-10 83.5 4.5 108 30-142 1522-1635(1639)
118 KOG2059 Ras GTPase-activating 97.9 3.9E-05 8.4E-10 75.4 7.5 108 51-162 149-278 (800)
119 KOG1013 Synaptic vesicle prote 97.6 1.3E-05 2.9E-10 72.9 0.4 132 30-163 91-232 (362)
120 KOG1011 Neurotransmitter relea 97.3 0.0012 2.7E-08 65.3 9.7 108 33-143 1126-1238(1283)
121 KOG1326 Membrane-associated pr 97.3 0.00036 7.8E-09 70.8 5.6 132 5-143 574-724 (1105)
122 KOG1328 Synaptic vesicle prote 97.3 0.00012 2.7E-09 72.6 1.8 97 31-128 946-1048(1103)
123 cd08683 C2_C2cd3 C2 domain fou 97.0 0.0023 4.9E-08 52.0 6.7 106 34-140 1-143 (143)
124 PLN02964 phosphatidylserine de 96.9 0.0021 4.5E-08 63.0 6.5 105 26-144 48-155 (644)
125 KOG1265 Phospholipase C [Lipid 96.5 0.011 2.3E-07 60.2 8.7 117 29-160 700-825 (1189)
126 PF11618 DUF3250: Protein of u 96.5 0.016 3.4E-07 44.8 7.5 86 67-160 11-105 (107)
127 cd08380 C2_PI3K_like C2 domain 96.4 0.015 3.3E-07 46.2 7.4 93 32-127 8-107 (156)
128 PF10358 NT-C2: N-terminal C2 96.2 0.31 6.7E-06 37.5 13.4 119 32-161 7-136 (143)
129 cd08693 C2_PI3K_class_I_beta_d 95.7 0.055 1.2E-06 44.6 7.7 93 32-127 8-120 (173)
130 cd08398 C2_PI3K_class_I_alpha 95.5 0.083 1.8E-06 43.2 7.9 90 32-126 8-105 (158)
131 cd08684 C2A_Tac2-N C2 domain f 94.7 0.072 1.6E-06 41.1 5.0 86 36-127 3-92 (103)
132 cd04012 C2A_PI3K_class_II C2 d 94.6 0.19 4.1E-06 41.0 7.8 98 30-127 6-119 (171)
133 PF15627 CEP76-C2: CEP76 C2 do 94.2 1.5 3.2E-05 36.3 12.0 131 30-164 7-154 (156)
134 KOG3837 Uncharacterized conser 94.2 0.084 1.8E-06 50.1 5.2 119 32-160 367-503 (523)
135 cd08679 C2_DOCK180_related C2 93.7 0.8 1.7E-05 37.4 9.6 57 68-126 53-115 (178)
136 cd08687 C2_PKN-like C2 domain 93.4 1.1 2.5E-05 34.5 9.3 89 49-160 5-93 (98)
137 cd08695 C2_Dock-B C2 domains f 93.2 0.91 2E-05 38.5 9.3 57 67-126 53-113 (189)
138 cd08399 C2_PI3K_class_I_gamma 92.9 0.7 1.5E-05 38.7 8.2 93 32-126 10-121 (178)
139 cd08397 C2_PI3K_class_III C2 d 92.5 0.43 9.4E-06 38.9 6.4 73 51-127 28-107 (159)
140 PF14429 DOCK-C2: C2 domain in 92.3 0.26 5.6E-06 40.3 4.8 57 68-126 60-120 (184)
141 cd08694 C2_Dock-A C2 domains f 91.9 1.7 3.6E-05 37.2 9.3 90 67-161 53-152 (196)
142 PF15625 CC2D2AN-C2: CC2D2A N- 91.4 2.3 5E-05 34.7 9.4 86 52-143 36-125 (168)
143 KOG1327 Copine [Signal transdu 91.1 0.52 1.1E-05 45.7 6.1 86 38-128 142-235 (529)
144 PF00792 PI3K_C2: Phosphoinosi 90.0 1.1 2.4E-05 35.1 6.2 71 54-127 3-85 (142)
145 KOG1013 Synaptic vesicle prote 89.2 0.54 1.2E-05 43.4 4.3 86 30-124 231-319 (362)
146 smart00142 PI3K_C2 Phosphoinos 88.0 2.1 4.6E-05 31.9 6.2 69 34-104 13-89 (100)
147 KOG1326 Membrane-associated pr 87.5 0.13 2.9E-06 52.8 -0.8 118 27-157 201-329 (1105)
148 cd08697 C2_Dock-D C2 domains f 85.0 2.4 5.2E-05 35.8 5.7 59 67-126 56-123 (185)
149 PF12416 DUF3668: Cep120 prote 84.8 19 0.00041 33.1 11.8 120 34-163 2-135 (340)
150 KOG1329 Phospholipase D1 [Lipi 81.5 3.1 6.7E-05 42.7 5.7 150 28-184 72-279 (887)
151 cd08696 C2_Dock-C C2 domains f 81.5 3.1 6.7E-05 34.9 4.9 58 68-126 55-118 (179)
152 KOG1452 Predicted Rho GTPase-a 76.9 3.5 7.6E-05 38.4 4.2 118 30-161 49-168 (442)
153 PF08150 FerB: FerB (NUC096) d 76.9 2.9 6.3E-05 30.8 3.0 45 100-159 8-53 (76)
154 KOG3543 Ca2+-dependent activat 76.7 21 0.00046 36.3 9.7 128 28-167 337-464 (1218)
155 cd05137 RasGAP_CLA2_BUD2 CLA2/ 75.4 4.8 0.0001 37.6 4.7 45 116-162 1-46 (395)
156 PF14924 DUF4497: Protein of u 67.3 12 0.00026 28.4 4.6 47 112-160 45-104 (112)
157 KOG2060 Rab3 effector RIM1 and 57.4 10 0.00022 35.8 3.0 109 29-143 266-380 (405)
158 KOG1327 Copine [Signal transdu 54.6 20 0.00044 35.0 4.7 85 44-129 2-104 (529)
159 PTZ00447 apical membrane antig 41.6 1.5E+02 0.0033 28.3 8.1 94 54-158 75-171 (508)
160 PRK10301 hypothetical protein; 40.6 43 0.00094 26.2 3.8 39 118-158 86-124 (124)
161 COG2372 CopC Uncharacterized p 39.6 91 0.002 25.1 5.5 38 119-158 88-125 (127)
162 PF07162 B9-C2: Ciliary basal 35.6 2.4E+02 0.0051 22.8 9.0 81 37-127 7-104 (168)
163 KOG4269 Rac GTPase-activating 35.0 31 0.00068 36.1 2.7 104 18-128 743-857 (1112)
164 KOG2419 Phosphatidylserine dec 34.1 6.2 0.00013 39.9 -2.3 85 27-128 275-363 (975)
165 PF04234 CopC: CopC domain; I 33.2 62 0.0013 23.7 3.5 39 118-158 59-97 (97)
166 PF05660 DUF807: Coxiella burn 30.7 73 0.0016 25.9 3.7 48 30-92 38-85 (142)
167 KOG1032 Uncharacterized conser 29.7 43 0.00092 33.1 2.6 59 30-92 95-153 (590)
168 PF14186 Aida_C2: Cytoskeletal 27.5 2.3E+02 0.0049 23.3 6.1 91 33-128 14-113 (147)
169 PF09295 ChAPs: ChAPs (Chs5p-A 26.2 40 0.00086 31.6 1.6 38 47-87 56-97 (395)
170 PF11875 DUF3395: Domain of un 24.3 35 0.00075 27.7 0.8 46 117-163 84-137 (151)
171 KOG3374 Cellular repressor of 22.4 58 0.0013 28.1 1.8 25 53-82 108-132 (210)
172 PF14909 SPATA6: Spermatogenes 22.2 2.2E+02 0.0049 23.2 5.1 48 34-92 4-55 (140)
173 PF04753 Corona_NS2: Coronavir 20.7 1.5E+02 0.0033 23.1 3.6 41 114-154 33-74 (109)
No 1
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.96 E-value=2.8e-29 Score=195.23 Aligned_cols=119 Identities=24% Similarity=0.396 Sum_probs=99.9
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecc
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKS 110 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~ 110 (188)
.|+|+|+|++||+|+|.+ ||+|||||+|++++ ++++|+|+.++|.||+|||+|.|+|......|.++|| +++
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~----d~d 72 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH---AVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIF----DER 72 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC---EEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEE----eCC
Confidence 489999999999999999 99999999999977 7889999999999999999999999765455666665 445
Q ss_pred -cccCccceEEEEechhhhhcCC-CcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 111 -FVEDQLLGFTLVPLSEVLLNNG-KLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 111 -~~~Dd~IG~a~VpL~ell~~~G-~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
+..|++||++.|||.+.+. .| ..+.||+|.... ..+..|.|+|+|+|
T Consensus 73 ~~~~dd~iG~~~i~l~~~~~-~g~~~~~W~~L~~~~-~~~~~g~i~l~l~y 121 (121)
T cd04016 73 AFTMDERIAWTHITIPESVF-NGETLDDWYSLSGKQ-GEDKEGMINLVFSY 121 (121)
T ss_pred CCcCCceEEEEEEECchhcc-CCCCccccEeCcCcc-CCCCceEEEEEEeC
Confidence 5679999999999975442 45 467899997643 23467999999987
No 2
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.94 E-value=1.6e-26 Score=173.54 Aligned_cols=117 Identities=27% Similarity=0.392 Sum_probs=100.5
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeecc
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKS 110 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~ 110 (188)
|+|+|+|++|+||++.+.++++||||++++.+ .+++|++++.++.||+|||.|.|.+... ...|.++||. ++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d----~~ 73 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFD----DD 73 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC---CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEe----CC
Confidence 79999999999999999999999999999976 6778999988999999999999999764 3567778764 34
Q ss_pred cccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 111 FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 111 ~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
..+|++||++.++|++++. .+....||+|... ++.+|+|+|+|+|
T Consensus 74 ~~~~~~iG~~~~~l~~~~~-~~~~~~w~~L~~~---~~~~G~i~l~l~f 118 (118)
T cd08681 74 KRKPDLIGDTEVDLSPALK-EGEFDDWYELTLK---GRYAGEVYLELTF 118 (118)
T ss_pred CCCCcceEEEEEecHHHhh-cCCCCCcEEeccC---CcEeeEEEEEEEC
Confidence 3469999999999999984 3455689999764 4689999999997
No 3
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.93 E-value=2.2e-25 Score=169.23 Aligned_cols=115 Identities=23% Similarity=0.410 Sum_probs=97.0
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-----CCcceEEEEEEee
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-----DSSLKSEIFTVSR 107 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-----~~~L~~ei~~~~r 107 (188)
+|+|+|++|+||++.+.++++||||+|++.+ .++++|+++++||.||+|||+|.|.+... ...|.++||..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~--~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~-- 76 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP--SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE-- 76 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC--CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC--
Confidence 6999999999999999999999999999965 46788999999999999999999999866 45677777632
Q ss_pred ecccccCccceEEEEechhhhhcCCCc-----ceeEEeeecCCCCCcceEEEE
Q 045047 108 IKSFVEDQLLGFTLVPLSEVLLNNGKL-----DTEFSLSSTDFLHSPAGFVQL 155 (188)
Q Consensus 108 ~~~~~~Dd~IG~a~VpL~ell~~~G~~-----~~~~~l~s~d~~~kp~G~V~L 155 (188)
+.+..|++||++.+||.+++.+ +.. ..||+|... .|+++|+|++
T Consensus 77 -~~~~~~~~lG~~~i~l~~l~~~-~~~~~~~~~~~~~l~~~--~g~~~G~~~~ 125 (125)
T cd04051 77 -RPSLGDKLIGEVRVPLKDLLDG-ASPAGELRFLSYQLRRP--SGKPQGVLNF 125 (125)
T ss_pred -CCCCCCCcEEEEEEEHHHhhcc-cCCCCcceeEEEEeECC--CCCcCeEEeC
Confidence 2346899999999999999953 322 369999976 4799999985
No 4
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=3e-23 Score=165.89 Aligned_cols=123 Identities=17% Similarity=0.138 Sum_probs=100.8
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC-CcceEEEEEEeeeccc
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSEIFTVSRIKSF 111 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ei~~~~r~~~~ 111 (188)
.|.|+|++||||...+.+|++||||++++++ ++++|+++..++.||+|||+|.|.|.++. +.+.++|+.. +..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~---~~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN---QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDR---VGP 74 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC---EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEe---cCC
Confidence 4899999999999999999999999999977 78899999888999999999999997643 4566666532 224
Q ss_pred ccCccceEEEEechhhhhc--CC-CcceeEEeeecCC------CCCcceEEEEEEEEee
Q 045047 112 VEDQLLGFTLVPLSEVLLN--NG-KLDTEFSLSSTDF------LHSPAGFVQLSLRYAS 161 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~~--~G-~~~~~~~l~s~d~------~~kp~G~V~Lsl~f~~ 161 (188)
..|++||++.|||.++..+ .+ ..++||+|..... ..+.+|+|+|.+.|.+
T Consensus 75 ~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 75 NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 5799999999999999742 22 3458999987631 2478999999999985
No 5
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.90 E-value=4.1e-23 Score=154.95 Aligned_cols=122 Identities=24% Similarity=0.352 Sum_probs=97.7
Q ss_pred ceEEEEEEEeecCCCCCCCc-cCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeec
Q 045047 31 ASVFLKFIYIARDIHDIGVY-HKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIK 109 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~f-gKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~ 109 (188)
+|+|+|+|++|+||++.+.+ +++||||++++.++ ....+|++.+ ++.||+|||.|.|.+......|.++||+..
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~-~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~--- 75 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKK-DTSNPVWNETKYILVNSLTEPLNLTVYDFN--- 75 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeec-CCCCCcceEEEEEEeCCCCCEEEEEEEecC---
Confidence 58999999999999988766 56999999999653 4677899875 589999999999999855667888887532
Q ss_pred ccccCccceEEEEechhhhhcCCCcc-eeEEeeecCCCCCcceEEEEEEEEee
Q 045047 110 SFVEDQLLGFTLVPLSEVLLNNGKLD-TEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 110 ~~~~Dd~IG~a~VpL~ell~~~G~~~-~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
....|++||++.+||++++. .+... .++.+.. .++++|+|+++|+|.|
T Consensus 76 ~~~~d~~iG~~~~~l~~l~~-~~~~~~~~~~~~~---~~k~~G~i~~~l~~~p 124 (124)
T cd04044 76 DKRKDKLIGTAEFDLSSLLQ-NPEQENLTKNLLR---NGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCceeEEEEEEHHHhcc-CccccCcchhhhc---CCccceEEEEEEEeCC
Confidence 34589999999999999984 34443 3445543 4588999999999964
No 6
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.90 E-value=7.5e-23 Score=156.54 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=98.5
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC----CcceEEEEEEeee
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD----SSLKSEIFTVSRI 108 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~----~~L~~ei~~~~r~ 108 (188)
.|.|+|++||||...+..++.||||++++.+ ++++|++.+ ++.||+|||+|.|.+.... ..|.++||.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~---~~~rT~v~~-~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d---- 72 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG---QKKRTRTKP-KDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYN---- 72 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EEecceeEc-CCCCCccceEEEEEccCHHHccCCeEEEEEee----
Confidence 3899999999999999999999999999976 678899975 7899999999999997542 346666653
Q ss_pred cc-cc-cCccceEEEEechhhhhcCC-CcceeEEeeecCCCCCcceEEEEEEEEe
Q 045047 109 KS-FV-EDQLLGFTLVPLSEVLLNNG-KLDTEFSLSSTDFLHSPAGFVQLSLRYA 160 (188)
Q Consensus 109 ~~-~~-~Dd~IG~a~VpL~ell~~~G-~~~~~~~l~s~d~~~kp~G~V~Lsl~f~ 160 (188)
++ +. .|++||++.|||+++.. .| ....||+|......++++|+|+|++.|+
T Consensus 73 ~~~~~~~d~~lG~v~i~l~~l~~-~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 73 DRRSGRRRSFLGRVRISGTSFVP-PSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CCCCcCCCCeeeEEEEcHHHcCC-CCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 33 44 79999999999999984 34 4458999987655667999999999885
No 7
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.89 E-value=8.5e-23 Score=156.06 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=93.1
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC------CCcceEEEEEEee
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV------DSSLKSEIFTVSR 107 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~------~~~L~~ei~~~~r 107 (188)
+.|+|++||||+..+..|++||||+|++.+ ++++|++++++ .||+|||+|.|.+... ...|.++||..
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~---~~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~-- 74 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK---EKYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQLTVMHR-- 74 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC---eeeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEEEEEEc--
Confidence 579999999999999999999999999975 78899998765 9999999999999762 34566666532
Q ss_pred ecccccCccceEEEEechhhhhcCC-CcceeEEeeecC-CCCCcceEEEEEE
Q 045047 108 IKSFVEDQLLGFTLVPLSEVLLNNG-KLDTEFSLSSTD-FLHSPAGFVQLSL 157 (188)
Q Consensus 108 ~~~~~~Dd~IG~a~VpL~ell~~~G-~~~~~~~l~s~d-~~~kp~G~V~Lsl 157 (188)
+.+..|++||++.|||+++....| ..+.||+|.... ...+.+|+|+|++
T Consensus 75 -~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 75 -NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred -cccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 124569999999999999974334 455899997542 1235689999986
No 8
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.89 E-value=1.4e-22 Score=151.80 Aligned_cols=119 Identities=18% Similarity=0.272 Sum_probs=99.4
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeeccc
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSF 111 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~ 111 (188)
|+|+|+|++|+||++.+.++++||||++++.+ .+.+|++.++ +.||+|||+|.|.+.+....+.++||... ..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~~T~~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v~d~~---~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN---ARLQTHTIYK-TLNPEWNKIFTFPIKDIHDVLEVTVYDED---KD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC---EeeecceecC-CcCCccCcEEEEEecCcCCEEEEEEEECC---CC
Confidence 78999999999999999999999999999976 5678999765 79999999999999776666777776421 24
Q ss_pred ccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEe
Q 045047 112 VEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYA 160 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~ 160 (188)
..|++||++.+||.++.. | ...||+|.......+.+|+|.|++.|.
T Consensus 74 ~~~~~iG~~~~~l~~~~~--~-~~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKN--G-ERKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred CCCceeeEEEEEHHHCCC--C-CceEEECcccCCCCceeeEEEEEEEeC
Confidence 579999999999999862 3 357999986654557899999999873
No 9
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.88 E-value=6.2e-22 Score=150.05 Aligned_cols=120 Identities=20% Similarity=0.324 Sum_probs=98.8
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeeccccc
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE 113 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~~ 113 (188)
|.|+|++|++|+..+.+++.||||++.+.+ ...++|++.+ .+.||+|||+|.|.+......+.++||... .+..
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~--~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d---~~~~ 75 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG--KTVYKSKTIY-KNLNPVWDEKFTLPIEDVTQPLYIKVFDYD---RGLT 75 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC--EEEEEeeecc-CCCCCccceeEEEEecCCCCeEEEEEEeCC---CCCC
Confidence 899999999999999999999999999964 3567899876 579999999999999776667888886431 2458
Q ss_pred CccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 114 DQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 114 Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
|++||.+.+||+++.. .+..+.+++|.... ..+.+|+|+|.++|.+
T Consensus 76 ~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~-~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 76 DDFMGSAFVDLSTLEL-NKPTEVKLKLEDPN-SDEDLGYISLVVTLTP 121 (121)
T ss_pred CcceEEEEEEHHHcCC-CCCeEEEEECCCCC-CccCceEEEEEEEECC
Confidence 9999999999999984 34566799996542 1367899999999964
No 10
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.88 E-value=6e-22 Score=151.48 Aligned_cols=123 Identities=22% Similarity=0.335 Sum_probs=98.4
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCC----CCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeee
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP----ENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRI 108 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~----~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~ 108 (188)
+|.|+|++|+||.+.+++++.||||++++.+.. ..+.+|++.+ ++.||+|||+|.|.+......|.++||..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~l~~~v~d~--- 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIK-KTLNPKWNEEFFFRVNPREHRLLFEVFDE--- 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEc-CCCCCcEeeEEEEEEcCCCCEEEEEEEEC---
Confidence 589999999999999999999999999997631 1356798865 68999999999999976555677777632
Q ss_pred cccccCccceEEEEechhhhhcC-C----CcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 109 KSFVEDQLLGFTLVPLSEVLLNN-G----KLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 109 ~~~~~Dd~IG~a~VpL~ell~~~-G----~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
+.+..|++||++.+||+++..+. + ....||+|......++.+|+|+|+++|
T Consensus 77 ~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 12457999999999999998521 1 233799998665456789999999998
No 11
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.88 E-value=2.7e-22 Score=157.09 Aligned_cols=118 Identities=19% Similarity=0.154 Sum_probs=94.5
Q ss_pred EEEEEEEeecC---CCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeee-
Q 045047 33 VFLKFIYIARD---IHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRI- 108 (188)
Q Consensus 33 tLEV~visAkd---Lkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~- 108 (188)
.|+|+|++|+| |+..+..|++||||+|++++ ++.||+++++ +.||+|||+|.|.+.+....|.++||.....
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~---~~~rTk~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP---KWVRTRTVED-SSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC---EEeEcCcccC-CCCCcceeEEEEEecCCCCEEEEEEEECCCcc
Confidence 48999999999 99999999999999999976 7889999874 7899999999999987666677777643210
Q ss_pred --cccccCccceEEEEechhhhhcCCCcceeEEeeecCC-CCCcceEEEE
Q 045047 109 --KSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDF-LHSPAGFVQL 155 (188)
Q Consensus 109 --~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~-~~kp~G~V~L 155 (188)
.....|++||++.|||+++.. ....+.||+|...+. ..+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLED-DRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccC-CCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 001389999999999999973 346668999987652 2356788875
No 12
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.88 E-value=6.8e-22 Score=158.92 Aligned_cols=123 Identities=22% Similarity=0.342 Sum_probs=98.2
Q ss_pred cceEEEEEEEeecCCCCCCC------------------------------ccCCCceEEEEEecCCCCeEeeecccCCCC
Q 045047 30 LASVFLKFIYIARDIHDIGV------------------------------YHKQDVYATLCLTSDPENTVTTKIIYAGGS 79 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~------------------------------fgKqDpYavl~l~g~~~~~~~T~v~~~GG~ 79 (188)
..|+|+|+|+.|++|.+.+. .|+.||||+|++++ ....||++.++ +.
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~--~~~~rT~v~~~-~~ 81 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG--ARVARTRVIEN-SE 81 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC--eEeeEEEEeCC-CC
Confidence 57999999999999999873 56789999999965 23358999765 59
Q ss_pred CCccCceeEEEeecCCCcceEEEEEEeeecccccCccceEEEEechhhhhcCCCcceeEEeeecCCC-CCcceEEEEEEE
Q 045047 80 NPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFL-HSPAGFVQLSLR 158 (188)
Q Consensus 80 NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~-~kp~G~V~Lsl~ 158 (188)
||+|||+|.|.+....+.+.++|+ +++.++|++||.+.|||+++.. .+..+.||+|...... .++.|.|+|+++
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~----d~d~~~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVK----DNDVVGAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEE----eCCCcCCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence 999999999999766666666664 4466689999999999999983 3466689999765221 245789999999
Q ss_pred Ee
Q 045047 159 YA 160 (188)
Q Consensus 159 f~ 160 (188)
|.
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 94
No 13
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.88 E-value=8.6e-22 Score=148.89 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=94.3
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeecccc
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSFV 112 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~~ 112 (188)
|.|+|++|++|++.+.+++.||||++++.+.+..+++|+++++ +.||+|||+|.|.+... .+.|.++||. ++.+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v~d----~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLELTVMD----EDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEEEEEE----CCCC
Confidence 7899999999999999999999999999765567788999875 68999999999999754 3346667754 3433
Q ss_pred cCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 113 EDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 113 ~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
.|++||++.+||+++.. ......||+|.. +++|+|++++.+
T Consensus 77 ~~~~iG~~~~~l~~l~~-g~~~~~~~~L~~-----~~~g~l~~~~~~ 117 (119)
T cd04036 77 MDDHLGTVLFDVSKLKL-GEKVRVTFSLNP-----QGKEELEVEFLL 117 (119)
T ss_pred CCcccEEEEEEHHHCCC-CCcEEEEEECCC-----CCCceEEEEEEe
Confidence 89999999999999973 235668999864 358999999886
No 14
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.87 E-value=1.8e-21 Score=149.50 Aligned_cols=121 Identities=14% Similarity=0.170 Sum_probs=101.0
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecc
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKS 110 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~ 110 (188)
.+.|+|+|++|++|++.+.+|+.||||++++.+ ++++|++++ +..||+|||.|.|.+......|.++||. ++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~---~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~l~i~V~d----~~ 73 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG---ESVRSPVQK-DTLSPEFDTQAIFYRKKPRSPIKIQVWN----SN 73 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC---EEEEeCccC-CCCCCcccceEEEEecCCCCEEEEEEEE----CC
Confidence 468999999999999999999999999999977 688999975 6799999999999987766678888875 34
Q ss_pred cccCccceEEEEechhhhhcCCCcceeEEee--ecCCCCCcceEEEEEEEEeec
Q 045047 111 FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLS--STDFLHSPAGFVQLSLRYASD 162 (188)
Q Consensus 111 ~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~--s~d~~~kp~G~V~Lsl~f~~~ 162 (188)
.+.|++||++.+++.++. +....+|+|. ..+.+++..|+|.|.+++..+
T Consensus 74 ~~~d~~lG~~~~~l~~~~---~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 74 LLCDEFLGQATLSADPND---SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCCCceEEEEEecccCC---CcCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 457999999999999853 4555788884 333567889999999988753
No 15
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.87 E-value=3.7e-22 Score=164.40 Aligned_cols=95 Identities=21% Similarity=0.336 Sum_probs=86.9
Q ss_pred CccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEee
Q 045047 28 LPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSR 107 (188)
Q Consensus 28 ~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r 107 (188)
.|..|.|+|+|++|.||.--|+.+++||||+|.+++ ++.+|++ .++|.||+|||.|.|+|.++...|++.||+.+
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~---q~lkT~~-v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D- 76 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN---QKLKTRV-VYKNLNPEWNEELTFTVKDPNTPLKVTVYDKD- 76 (168)
T ss_pred CccceEEEEEEEeecCeeeeccccCCCCeEEEEECC---eeeeeee-ecCCCCCcccceEEEEecCCCceEEEEEEeCC-
Confidence 578999999999999999999889999999999998 8999994 67999999999999999999999999887432
Q ss_pred ecccccCccceEEEEechhhhh
Q 045047 108 IKSFVEDQLLGFTLVPLSEVLL 129 (188)
Q Consensus 108 ~~~~~~Dd~IG~a~VpL~ell~ 129 (188)
.+..||++|+|.|||..++.
T Consensus 77 --~fs~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 77 --TFSSDDFMGEATIPLKPLLE 96 (168)
T ss_pred --CCCcccccceeeeccHHHHH
Confidence 37799999999999999995
No 16
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.87 E-value=8.7e-22 Score=149.54 Aligned_cols=104 Identities=20% Similarity=0.316 Sum_probs=86.5
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC----CCcceEEEEEEee
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV----DSSLKSEIFTVSR 107 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~----~~~L~~ei~~~~r 107 (188)
|.|+|+|++|+||++.++++++||||++++.+ +.++|++.+.++.||+|||+|.|.+... ...|.++||..
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~-- 75 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT---QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK-- 75 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC---EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC--
Confidence 78999999999999999999999999999965 5678999988899999999999999876 34576776542
Q ss_pred ecccccCccceEEEEechhhhhcCCCcceeEEeee
Q 045047 108 IKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSS 142 (188)
Q Consensus 108 ~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s 142 (188)
+.+..|++||++.+||++++. .|..+.||.|.-
T Consensus 76 -~~~~~d~~iG~~~i~l~~l~~-~~~~~~~~~l~p 108 (124)
T cd04049 76 -DNFSDDDFIGEATIHLKGLFE-EGVEPGTAELVP 108 (124)
T ss_pred -ccCCCCCeEEEEEEEhHHhhh-CCCCcCceEeec
Confidence 235589999999999999994 566666665543
No 17
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.87 E-value=1.8e-21 Score=152.77 Aligned_cols=120 Identities=25% Similarity=0.357 Sum_probs=96.1
Q ss_pred CccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC-CcceEEEEEEe
Q 045047 28 LPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSEIFTVS 106 (188)
Q Consensus 28 ~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ei~~~~ 106 (188)
...+|.|.|+|++|+||++.+.+|++||||++++.+ ++++|++++ +..||+|||+|.|.+.+.. ..|.++||..
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~---~~~kT~vi~-~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~- 85 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS---QEHKTKVVS-DTLNPKWNSSMQFFVKDLEQDVLCITVFDR- 85 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EeeeccccC-CCCCCccCceEEEEecCccCCEEEEEEEEC-
Confidence 347899999999999999999999999999999965 678999977 5799999999999997643 4577888743
Q ss_pred eecccccCccceEEEEechhhhhcC----CCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLLNN----GKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~~~----G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
+.+..|++||.+.|||.+++... +....+..+ ....+|+|+|+++|
T Consensus 86 --d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-----~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 --DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL-----HEVPTGEVVVKLDL 135 (136)
T ss_pred --CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc-----ccccceeEEEEEEe
Confidence 13557999999999999998521 122234443 23668999999998
No 18
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.86 E-value=5.8e-21 Score=147.16 Aligned_cols=121 Identities=20% Similarity=0.209 Sum_probs=92.8
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC-CcceEEEEEEeee
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSEIFTVSRI 108 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ei~~~~r~ 108 (188)
....|.|+|++|+||+.. +..||||+|++.+ ....+|++ + ++.||+|||.|.|.+.... ..+.+.+|..
T Consensus 2 ~~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~--~~~~kT~v-~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~--- 71 (126)
T cd08400 2 QVRSLQLNVLEAHKLPVK---HVPHPYCVISLNE--VKVARTKV-R-EGPNPVWSEEFVFDDLPPDVNSFTISLSNK--- 71 (126)
T ss_pred ceeEEEEEEEEeeCCCCC---CCCCeeEEEEECC--EeEEEeec-C-CCCCCccCCEEEEecCCCCcCEEEEEEEEC---
Confidence 356899999999999985 4689999999954 34467887 3 5799999999999875443 3455555432
Q ss_pred cccccCccceEEEEechhhhhcCCCcceeEEeeecCC-CCCcceEEEEEEEEee
Q 045047 109 KSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDF-LHSPAGFVQLSLRYAS 161 (188)
Q Consensus 109 ~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~-~~kp~G~V~Lsl~f~~ 161 (188)
+.+..|++||++.|||+++.. .+..+.||+|..... ..+.+|+|+|+++|.+
T Consensus 72 ~~~~~d~~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 72 AKRSKDSEIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCCCCCeEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 235689999999999999984 346668999976532 2356899999999975
No 19
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.86 E-value=7.6e-21 Score=145.11 Aligned_cols=120 Identities=13% Similarity=0.190 Sum_probs=97.1
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecccc
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFV 112 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~ 112 (188)
.|.|+|++|++|++.+.+|+.||||++.+.+ ....+|+++++ ..||+|||.|.|.+......|.++||.. +.+.
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~--~~~~kT~v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v~d~---~~~~ 74 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDN--EVIIRTATVWK-TLNPFWGEEYTVHLPPGFHTVSFYVLDE---DTLS 74 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECC--EeeeeeeeEcC-CCCCcccceEEEeeCCCCCEEEEEEEEC---CCCC
Confidence 3899999999999999999999999999965 23458999765 7999999999999976556677777632 2355
Q ss_pred cCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEE
Q 045047 113 EDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLR 158 (188)
Q Consensus 113 ~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~ 158 (188)
.|++||++.+++.++..+.+..+.||+|...+..++..|+|+|+++
T Consensus 75 ~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 75 RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 7999999999999987433346789999776555567899999875
No 20
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.86 E-value=6.6e-21 Score=143.98 Aligned_cols=121 Identities=23% Similarity=0.285 Sum_probs=97.8
Q ss_pred eEEEEEEEeecCCCCCCC--ccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeec-CCCcceEEEEEEeee
Q 045047 32 SVFLKFIYIARDIHDIGV--YHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKT-VDSSLKSEIFTVSRI 108 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~--fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~-~~~~L~~ei~~~~r~ 108 (188)
|+|.|+|++|+||...+. +++.||||++.+++ ++++|++.+ ...||+|||.|.|.+.. ....|.++||...
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~---~~~kT~~~~-~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~-- 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA---QRFKTQTIP-NTLNPKWNYWCEFPIFSAQNQLLKLILWDKD-- 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC---EEEecceec-CCcCCccCCcEEEEecCCCCCEEEEEEEECC--
Confidence 789999999999999999 99999999999965 678899976 47999999999999986 3456777776421
Q ss_pred cccccCccceEEEEechhhhhc--CCCcceeEEeeecC--CCCCcceEEEEEEEE
Q 045047 109 KSFVEDQLLGFTLVPLSEVLLN--NGKLDTEFSLSSTD--FLHSPAGFVQLSLRY 159 (188)
Q Consensus 109 ~~~~~Dd~IG~a~VpL~ell~~--~G~~~~~~~l~s~d--~~~kp~G~V~Lsl~f 159 (188)
....|++||++.|+|++++.. .+..+.||.|.... .....+|+|+|.+++
T Consensus 75 -~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 75 -RFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred -CCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 244799999999999999831 23456899997552 223579999999864
No 21
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.86 E-value=1.5e-20 Score=143.92 Aligned_cols=121 Identities=17% Similarity=0.279 Sum_probs=96.8
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeeccccc
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE 113 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~~ 113 (188)
|-|+|++|+||.. .+|+.||||++++.+ +.++.+|++.++ ..||+|||.|.|.+......|.++||... ....
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v~d~~---~~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKN-TSNPFWDEHFLFELSPNSKELLFEVYDNG---KKSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEec-CCCCccCceEEEEeCCCCCEEEEEEEECC---CCCC
Confidence 6799999999998 789999999999953 235678999874 58999999999999655567888887432 2457
Q ss_pred CccceEEEEechhhhhcCCCcceeEEeeecCC-CCCcceEEEEEEEEeec
Q 045047 114 DQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDF-LHSPAGFVQLSLRYASD 162 (188)
Q Consensus 114 Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~-~~kp~G~V~Lsl~f~~~ 162 (188)
|++||++.+||.+++. ......+|+|..... ..+.+|+|++++.|...
T Consensus 74 ~~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 74 SKFLGLAIVPFDELRK-NPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred CceEEEEEEeHHHhcc-CCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 9999999999999984 345567999975421 24679999999999763
No 22
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=7.7e-21 Score=146.00 Aligned_cols=115 Identities=20% Similarity=0.193 Sum_probs=94.2
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeeccc
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSF 111 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~ 111 (188)
.|.|+|++||||+.. +.||||++++.+ ++.+|++++ +..||+|||+|.|.+... ...|.++||.. +.
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~---~~~kT~v~~-~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~----d~ 68 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN---YKGSTKAIE-RTSNPEWNQVFAFSKDRLQGSTLEVSVWDK----DK 68 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC---ccccccccC-CCCCCccceEEEEEcCCCcCCEEEEEEEeC----CC
Confidence 389999999999998 899999999976 678899976 578999999999998764 45677777643 33
Q ss_pred ccCccceEEEEechhhhhcC---C-CcceeEEeeecCCCCCcceEEEEEEEEe
Q 045047 112 VEDQLLGFTLVPLSEVLLNN---G-KLDTEFSLSSTDFLHSPAGFVQLSLRYA 160 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~~~---G-~~~~~~~l~s~d~~~kp~G~V~Lsl~f~ 160 (188)
++|++||.+.+||+++.... + ..+.||+|..... .+.+|+|+|++.|+
T Consensus 69 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 69 AKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred CcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 48999999999999997421 1 2348999987753 57899999999996
No 23
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=5.4e-21 Score=151.31 Aligned_cols=101 Identities=23% Similarity=0.328 Sum_probs=83.9
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecc
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKS 110 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~ 110 (188)
.|.|.|+|++||+|++.+.| ||||+|+|++ ++.+|++.+ |.||+|||+|.|.+.+....|.++||. ++
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~---dPYV~Ik~g~---~k~kT~v~~--~~nP~WnE~F~F~~~~~~~~L~v~V~d----kd 68 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKF---NTYVTLKVQN---VKSTTIAVR--GSQPCWEQDFMFEINRLDLGLVIELWN----KG 68 (127)
T ss_pred CceEEEEEEEeeCCCCCCCC---CCeEEEEECC---EEeEeeECC--CCCCceeeEEEEEEcCCCCEEEEEEEe----CC
Confidence 36899999999999999876 7999999966 666777774 479999999999998777678888864 45
Q ss_pred cccCccceEEEEechhhhhcCCCcc-eeEEeeec
Q 045047 111 FVEDQLLGFTLVPLSEVLLNNGKLD-TEFSLSST 143 (188)
Q Consensus 111 ~~~Dd~IG~a~VpL~ell~~~G~~~-~~~~l~s~ 143 (188)
.+.||+||++.|||.+++..+..+. +||+|.+.
T Consensus 69 ~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 69 LIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CcCCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 6799999999999999996433444 79999754
No 24
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.85 E-value=1.6e-20 Score=143.69 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=93.6
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecccc-
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFV- 112 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~- 112 (188)
|+|+|++||+|++.+.+++.||||+|++.+ .+.++|++++ +..||+|||+|.|.+.. ...|.++||... .+.
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~kT~v~~-~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~---~~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAK-KTLDPKWNEHFDLTVGP-SSIITIQVFDQK---KFKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC--ccceEccEEc-CCCCCcccceEEEEeCC-CCEEEEEEEECC---CCCC
Confidence 899999999999999999999999999954 4678899875 57899999999999965 557888887432 122
Q ss_pred -cCccceEEEEechhhhhcCCCcceeEEeeecC--CCCCcceEEEEEEE
Q 045047 113 -EDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTD--FLHSPAGFVQLSLR 158 (188)
Q Consensus 113 -~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d--~~~kp~G~V~Lsl~ 158 (188)
.|++||++.+||++++...+....||++.... ..++..|+|.+.++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~~ 123 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSLS 123 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEeC
Confidence 26899999999999985433445799985443 24566899988764
No 25
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.85 E-value=1.3e-20 Score=141.01 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=94.9
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeeccc
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSF 111 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~ 111 (188)
+|.|+|++|+||+..+.+++.||||++++.+ ++.+|++.+ ...||+|||+|.|.+... ...|.++||.. +.+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~---~~~ 73 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN---EKYKSKVCS-KTLNPQWLEQFDLHLFDDQSQILEIEVWDK---DTG 73 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECC---EeEeccccc-CCCCCceeEEEEEEecCCCCCEEEEEEEEC---CCC
Confidence 4789999999999999999999999999976 678899866 589999999999999765 45677777643 134
Q ss_pred ccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 112 VEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
..|++||++.++|+++.. .+..+.||+|... +|.|++.++|.+
T Consensus 74 ~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~------~G~~~~~~~~~~ 116 (116)
T cd08376 74 KKDEFIGRCEIDLSALPR-EQTHSLELELEDG------EGSLLLLLTLTG 116 (116)
T ss_pred CCCCeEEEEEEeHHHCCC-CCceEEEEEccCC------CcEEEEEEEecC
Confidence 579999999999999973 3455579998643 699999998864
No 26
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.85 E-value=1.5e-20 Score=140.49 Aligned_cols=114 Identities=25% Similarity=0.373 Sum_probs=94.3
Q ss_pred eEEEEEEEeecCCCCCCCc------cCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEE
Q 045047 32 SVFLKFIYIARDIHDIGVY------HKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFT 104 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~f------gKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~ 104 (188)
|+|.|+|++|+||++.+.+ ++.||||++++.+ +..+|++.+ .+.||+|||.|.|.+... ...+.+++|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~---~~~kT~~~~-~t~~P~W~e~f~~~v~~~~~~~l~i~v~d 76 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIK-ENLNPKWNEVYEAVVDEVPGQELEIELFD 76 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC---EeEEccccC-CCCCCcccceEEEEeCCCCCCEEEEEEEe
Confidence 7899999999999998864 6899999999976 778899976 489999999999999753 4567777753
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
++...|++||.+.++|+++. ..|..+.||+|... .+|.|+|.+.|
T Consensus 77 ----~~~~~~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 77 ----EDPDKDDFLGRLSIDLGSVE-KKGFIDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred ----cCCCCCCcEEEEEEEHHHhc-ccCccceEEECcCC-----CCceEEEEEeC
Confidence 33338999999999999998 45677799999653 47999998764
No 27
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.84 E-value=3.8e-20 Score=142.44 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=95.1
Q ss_pred ccceEEEEEEEeecCCCCCCCc----------cCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcc
Q 045047 29 PLASVFLKFIYIARDIHDIGVY----------HKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSL 98 (188)
Q Consensus 29 ~~~GtLEV~visAkdLkdv~~f----------gKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L 98 (188)
|..|+|.|+|++|+||++.+.. +.+||||++++.+ +...+|++.+ ...||+|||+|.|.|.+ .+.|
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~--~~~~kT~~~~-~t~~P~Wne~f~~~v~~-~~~l 76 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD--THIGKTSTKP-KTNSPVWNEEFTTEVHN-GRNL 76 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC--EEEeEEeEcC-CCCCCCcceeEEEEcCC-CCEE
Confidence 5789999999999999999873 5799999999964 2345788865 58999999999999963 3556
Q ss_pred eEEEEEEeeecccccCccceEEEEechhhhhc-CCCcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 99 KSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLN-NGKLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 99 ~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~-~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
.++||.. +.+..|++||++.|+|++++.+ .+..+.||+|. ++|.|+|.+.|.+
T Consensus 77 ~~~v~d~---~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-------~~G~l~l~~~~~~ 130 (132)
T cd04014 77 ELTVFHD---AAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-------PQGKLHVKIELKG 130 (132)
T ss_pred EEEEEeC---CCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-------CCcEEEEEEEEec
Confidence 6666521 2355799999999999999853 23556899985 4799999999976
No 28
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.84 E-value=2.8e-20 Score=144.62 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=81.2
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEec--CC--CCeEeeecccCCCCCCccCceeEEEeecCC----CcceEEEEE
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTS--DP--ENTVTTKIIYAGGSNPVFNESRQLKVKTVD----SSLKSEIFT 104 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g--~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~----~~L~~ei~~ 104 (188)
.|.|+|++||||+..+ .|+.||||+|+|-| .+ ..+++|++. +++.||+|||+|.|.|.... +.|.+.||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~-~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~- 77 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSK-NNNWSPKYNETFQFILGNEDDPESYELHICVK- 77 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEe-cCCCCCccCcEEEEEeeCcCCCceeEEEEEEE-
Confidence 3899999999999988 49999999999964 12 235678887 79999999999999997432 23555554
Q ss_pred Eeeecc-cccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 105 VSRIKS-FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 105 ~~r~~~-~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
+.+ ...|++||++.+||+++. ..|..+.|++|...
T Consensus 78 ---D~d~~~~dd~IG~~~l~l~~~~-~~~~~~~w~~L~~~ 113 (120)
T cd08395 78 ---DYCFARDDRLVGVTVLQLRDIA-QAGSCACWLPLGRR 113 (120)
T ss_pred ---EecccCCCCEEEEEEEEHHHCc-CCCcEEEEEECcCc
Confidence 234 346999999999999998 45677789998543
No 29
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.84 E-value=3.5e-20 Score=141.52 Aligned_cols=115 Identities=18% Similarity=0.301 Sum_probs=93.4
Q ss_pred EEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEEEeeecccccC
Q 045047 38 IYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFTVSRIKSFVED 114 (188)
Q Consensus 38 visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~~~r~~~~~~D 114 (188)
|++||||++ ++++.||||+|++.+ .+++|++.++ +.||+|||+|.|.+... ...|.++||.. +....|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~---~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~---~~~~~d 72 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG---VKKKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKDY---EKVGRN 72 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC---EeeecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEEC---CCCCCC
Confidence 789999999 899999999999976 6788999764 49999999999999753 34677777643 235579
Q ss_pred ccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEeecc
Q 045047 115 QLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYASDE 163 (188)
Q Consensus 115 d~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~~~ 163 (188)
++||++.++|+++. ..+....+|+|.... ....+|+|++++.|.+..
T Consensus 73 ~~iG~~~~~l~~l~-~~~~~~~~~~L~~~~-~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 73 RLIGSATVSLQDLV-SEGLLEVTEPLLDSN-GRPTGATISLEVSYQPPD 119 (127)
T ss_pred ceEEEEEEEhhHcc-cCCceEEEEeCcCCC-CCcccEEEEEEEEEeCCC
Confidence 99999999999998 456777899997553 224589999999998743
No 30
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.84 E-value=2.2e-20 Score=138.90 Aligned_cols=101 Identities=23% Similarity=0.352 Sum_probs=83.9
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeeccc
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSF 111 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~ 111 (188)
.|.|+|++|+||+..+..+.+||||++++++ ++++|++.+ ++.||+|||+|.|.+..+ ...|.++|+. ++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~v~v~d----~~~ 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKE-RTNNPVWEEGFTFLVRNPENQELEIEVKD----DKT 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECC---EEEeCcccc-CCCCCcccceEEEEeCCCCCCEEEEEEEE----CCC
Confidence 3899999999999999999999999999987 788899975 679999999999999864 3457677753 232
Q ss_pred ccCccceEEEEechhhhhcCC-CcceeEEeeec
Q 045047 112 VEDQLLGFTLVPLSEVLLNNG-KLDTEFSLSST 143 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~~~G-~~~~~~~l~s~ 143 (188)
|++||++.|||.+++...+ ..+.||+|..+
T Consensus 73 --~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 --GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred --CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 8999999999999995332 45689999654
No 31
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.84 E-value=7.4e-20 Score=140.54 Aligned_cols=119 Identities=22% Similarity=0.218 Sum_probs=95.7
Q ss_pred EEEEEEeecCCCCCC-CccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecccc
Q 045047 34 FLKFIYIARDIHDIG-VYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFV 112 (188)
Q Consensus 34 LEV~visAkdLkdv~-~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~ 112 (188)
|.|+|+.|+||+..+ ..|..||||+|.+.+ +...+|++.+ +..||+|||.|.|.|.+....|.+.+|.. +.+.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~--~~~~kT~v~~-kt~~P~WnE~F~f~v~~~~~~l~~~v~d~---~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ--EEVFRTKTVE-KSLCPFFGEDFYFEIPRTFRHLSFYIYDR---DVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC--ccEEEeeEEE-CCCCCccCCeEEEEcCCCCCEEEEEEEEC---CCCC
Confidence 789999999999874 357899999999954 3467899865 58999999999999986545676666543 2466
Q ss_pred cCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 113 EDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 113 ~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
.|++||.+.+||+++.. .+..+.||+|......++.+|.|+|++.|
T Consensus 76 ~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHK-YYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccC-CCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 89999999999999983 56667899998654455679999999876
No 32
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=1.2e-19 Score=139.16 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=88.8
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeeccc
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSF 111 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~ 111 (188)
|.|.|+|++|+||++.+.++++||||+|++.+ +...+|++. .++.||+|||.|.|.+......|.++||.. +.+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~--~~~~kT~~~-~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~---~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG--IVKGRTVTI-SNTLNPVWDEVLYVPVTSPNQKITLEVMDY---EKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC--EEeeceeEE-CCCcCCccCceEEEEecCCCCEEEEEEEEC---CCC
Confidence 78999999999999999999999999999954 356778875 569999999999999987767788888743 235
Q ss_pred ccCccceEEEEechhhhhcCCCcceeEEeeecC
Q 045047 112 VEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTD 144 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d 144 (188)
..|++||++.++|++++. +..+.||.+...+
T Consensus 75 ~~d~~IG~~~~~l~~l~~--~~~~~~~~~~~~~ 105 (120)
T cd04045 75 GKDRSLGSVEINVSDLIK--KNEDGKYVEYDDE 105 (120)
T ss_pred CCCCeeeEEEEeHHHhhC--CCCCceEEecCCC
Confidence 579999999999999983 4667899987764
No 33
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.82 E-value=1.5e-19 Score=137.08 Aligned_cols=116 Identities=16% Similarity=0.227 Sum_probs=93.7
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeecccc
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSFV 112 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~~ 112 (188)
|.|+|++|+||+..+.++..||||+|++.+ .+.+|++.++ ..||+|||+|.|.+... ...|.++||.. +.+.
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v~d~---~~~~ 74 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG---QTLETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEVWDW---DLVS 74 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC---EEEeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEEEEC---CCCC
Confidence 899999999999999999999999999976 6678998764 78999999999999764 35677777642 2355
Q ss_pred cCccceEEEEechhhhhcCCCcceeEEeeecC----CCCCcceEEEEEE
Q 045047 113 EDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTD----FLHSPAGFVQLSL 157 (188)
Q Consensus 113 ~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d----~~~kp~G~V~Lsl 157 (188)
.|++||++.++|+++.. .+....||.|.... ..++.+|.|+|.+
T Consensus 75 ~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 KNDFLGKVVFSIQTLQQ-AKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred CCcEeEEEEEEHHHccc-CCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 79999999999999973 45667899886421 2356799999875
No 34
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.82 E-value=1.1e-19 Score=136.57 Aligned_cols=94 Identities=23% Similarity=0.291 Sum_probs=79.4
Q ss_pred eEEEEEEEeecCCCCCCCc-cCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC----CCcceEEEEEEe
Q 045047 32 SVFLKFIYIARDIHDIGVY-HKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV----DSSLKSEIFTVS 106 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~f-gKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~----~~~L~~ei~~~~ 106 (188)
|+|.|+|++|++|+..+.+ ++.||||+|++.+.....++|++.++ ..||+|||+|.|.+... ...|.++||...
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 7999999999999999999 99999999999765556788999775 69999999999988643 346778886432
Q ss_pred eecccccCccceEEEEechhhhh
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLL 129 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~ 129 (188)
.+..|++||++.+||++++.
T Consensus 80 ---~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 80 ---RFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred ---CCCCCCcceEEEEEHHHHhc
Confidence 35679999999999999983
No 35
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.81 E-value=3e-19 Score=137.29 Aligned_cols=118 Identities=19% Similarity=0.293 Sum_probs=96.1
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeee----
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRI---- 108 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~---- 108 (188)
.|.|+|++|++|++.+.+|+.||||+|.+.+ .+++|++.+ ...||+|||+|.|.+......|.++||.....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~v~-~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK---TKKRTKTIP-QNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC---Eeeecceec-CCCCCccceEEEEEecCCCCEEEEEEEECCCCcccc
Confidence 5899999999999999999999999999964 677899865 47999999999999876556688888754311
Q ss_pred --ccc--ccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEE
Q 045047 109 --KSF--VEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSL 157 (188)
Q Consensus 109 --~~~--~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl 157 (188)
+++ ..|++||++.+||.++- +..+.||.|.....+...+|+|.|.+
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~---~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHcc---CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 011 36999999999999973 56679999987665667899999874
No 36
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.81 E-value=5.5e-19 Score=133.97 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=93.8
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeeccc
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSF 111 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~ 111 (188)
.|.|+|++|++|+..+.+++.||||+|.+.+.+....+|++.++ ..||+|||+|.|.+... ...|.++||... ..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d---~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATVWDRS---FV 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEEEECC---CC
Confidence 58999999999999999999999999998654345678999765 69999999999999764 356777776432 23
Q ss_pred ccCccceEEEEechhhhhcC-C-CcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 112 VEDQLLGFTLVPLSEVLLNN-G-KLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~~~-G-~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
..|++||++.++|++++... | ..+.||+|. ++|.|+|.+++..
T Consensus 78 ~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-------~~g~i~l~~~~~~ 122 (126)
T cd04043 78 GKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-------TQGRLLLRVSMEG 122 (126)
T ss_pred CCCceEEEEEEecCHHHcCCCCCCceEEEEcC-------CCCeEEEEEEEee
Confidence 47999999999999987533 4 334788884 3799999999864
No 37
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.81 E-value=1.8e-19 Score=138.52 Aligned_cols=104 Identities=22% Similarity=0.374 Sum_probs=83.7
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEe-ec--C-CCcceEEEEE
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKV-KT--V-DSSLKSEIFT 104 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V-~~--~-~~~L~~ei~~ 104 (188)
.|.|.|+|++||||...+ .+..||||+|++.+++ ..+++|++++ +..||+|||+|.|.+ +. . ...|.++||.
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d 89 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWS 89 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccC-CCCCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence 588999999999999999 8999999999998654 3478899976 469999999999997 32 2 2457677764
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
. +.+..|++||++.|||+++.. .+..+.||+|
T Consensus 90 ~---d~~~~~~~lG~~~i~l~~l~~-~~~~~~W~~L 121 (122)
T cd08381 90 H---DSLVENEFLGGVCIPLKKLDL-SQETEKWYPL 121 (122)
T ss_pred C---CCCcCCcEEEEEEEecccccc-CCCccceEEC
Confidence 2 235679999999999999973 3445679886
No 38
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.81 E-value=2.6e-19 Score=135.70 Aligned_cols=107 Identities=25% Similarity=0.299 Sum_probs=86.8
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEEEe
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFTVS 106 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~~~ 106 (188)
..|.|.|+|++|+||+..+..++.||||++.+.++...+++|++.+ +..||+|||+|.|.+... ...|.++||..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~- 91 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFTFKVPYSELGNKTLVFSVYDF- 91 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCc-CCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC-
Confidence 4578999999999999999999999999999976555677899865 679999999999999742 34677777643
Q ss_pred eecccccCccceEEEEechhhhhcCCCcceeEEee
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLS 141 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~ 141 (188)
+.+..|++||++.+||+++.. ....+.||.|.
T Consensus 92 --d~~~~~~~lG~~~i~l~~~~~-~~~~~~W~~l~ 123 (124)
T cd08385 92 --DRFSKHDLIGEVRVPLLTVDL-GHVTEEWRDLE 123 (124)
T ss_pred --CCCCCCceeEEEEEecCcccC-CCCcceEEEcc
Confidence 235679999999999999863 23455898874
No 39
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.80 E-value=3.9e-19 Score=136.54 Aligned_cols=105 Identities=16% Similarity=0.281 Sum_probs=81.7
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecCC--CcceEEEEEEe
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTVD--SSLKSEIFTVS 106 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~~--~~L~~ei~~~~ 106 (188)
.|.|+|+|+.||||.+.+ .+..||||++++..++. .+++|++.+ +..||+|||+|.|.+.... ..|.++||.
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~-~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~-- 86 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVP-DSANPLFHETFSFDVNERDYQKRLLVTVWN-- 86 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCcccc-CCCCCccccEEEEEcChHHhCCEEEEEEEC--
Confidence 578999999999999999 89999999999986543 466899875 6889999999999996432 345455542
Q ss_pred eecccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
++....++++||++.+||.+++. .+....||.|
T Consensus 87 ~~~~~~~~~~lG~~~i~l~~~~~-~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKSRDSGLLGCMSFGVKSIVN-QKEISGWYYL 119 (119)
T ss_pred CCCCcCCCEEEEEEEecHHHhcc-CccccceEeC
Confidence 22222358999999999999983 3456789975
No 40
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.80 E-value=4.8e-19 Score=133.24 Aligned_cols=106 Identities=19% Similarity=0.303 Sum_probs=85.2
Q ss_pred cceEEEEEEEeecCCCCCC-CccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEE
Q 045047 30 LASVFLKFIYIARDIHDIG-VYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIF 103 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~-~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~ 103 (188)
..|.|.|+|++|+||+..+ ..+++||||++++.++.. .+++|++ ..++.||+|||+|.|.+... ...|.++||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSV-KKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccc-cCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 4578999999999999999 789999999999964432 5678998 45799999999999998753 345777776
Q ss_pred EEeeecccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 104 TVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 104 ~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
.. +.+..|++||++.++|+++.. .+....||+|
T Consensus 91 d~---~~~~~~~~iG~~~i~l~~l~~-~~~~~~w~~l 123 (123)
T cd08521 91 HH---DRFGRNTFLGEVEIPLDSWDL-DSQQSEWYPL 123 (123)
T ss_pred eC---CCCcCCceeeEEEEecccccc-cCCCccEEEC
Confidence 42 235679999999999999963 4566789986
No 41
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.80 E-value=7.3e-19 Score=130.94 Aligned_cols=115 Identities=23% Similarity=0.258 Sum_probs=85.0
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC-CcceEEEEEEeeecccc
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSEIFTVSRIKSFV 112 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ei~~~~r~~~~~ 112 (188)
|.|+|++|+||+.. +.+||||++++.+ +...+|++.++ .||+|||+|.|.+.... ....+.+.+ ++++.
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~--~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v--~d~~~- 71 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ--VEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYN--KDKRS- 71 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC--EEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEE--Eeccc-
Confidence 88999999999987 8999999999965 34578999865 99999999999997643 223333332 23332
Q ss_pred cCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 113 EDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 113 ~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
.++.+|.+.|+|.++.. .+..+.||+|...+...+..|+|+|.++|
T Consensus 72 ~~~~~~~g~v~l~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 72 KDRDIVIGKVALSKLDL-GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CCCeeEEEEEEecCcCC-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 24446666778877763 35667899997765444668999999987
No 42
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.80 E-value=7.4e-19 Score=133.16 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=75.9
Q ss_pred eEEEEEEEeecCCCCCCCcc----CCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC--CcceEEEEEE
Q 045047 32 SVFLKFIYIARDIHDIGVYH----KQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD--SSLKSEIFTV 105 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fg----KqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~--~~L~~ei~~~ 105 (188)
|+|.|+|++|+||+..+.++ ++||||+|++++ .+++|+++++ ..||+|||+|.|.+.... ..|.++||..
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~---~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~V~D~ 76 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR---RVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFKVLDK 76 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC---EeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEEEEEC
Confidence 89999999999999988764 489999999965 6788999875 699999999999996543 2466676643
Q ss_pred eeecccccCccceEEEEechhhhhc
Q 045047 106 SRIKSFVEDQLLGFTLVPLSEVLLN 130 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~ell~~ 130 (188)
+.+..|++||++.++|++|+.+
T Consensus 77 ---d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 77 ---DKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred ---CCCCCCcceEEEEEEHHHHHhh
Confidence 2356899999999999999953
No 43
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.80 E-value=9.4e-19 Score=130.53 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=90.1
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeecccc
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSFV 112 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~~ 112 (188)
|+|+|++|++|++.+.++++||||++.+.+ ...++|++. .++.||+|||+|.|.+... .+.+.++||... ...
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~--~~~~~T~v~-~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~---~~~ 74 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG--EKVFKTKTI-KKTLNPVWNESFEVPVPSRVRAVLKVEVYDWD---RGG 74 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC--Ccceeecee-cCCCCCcccccEEEEeccCCCCEEEEEEEeCC---CCC
Confidence 689999999999999999999999999954 355789986 4699999999999999764 456777776432 245
Q ss_pred cCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEE
Q 045047 113 EDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQL 155 (188)
Q Consensus 113 ~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~L 155 (188)
.|++||++.++|.++.. ....+.+++|... .+...|++-|
T Consensus 75 ~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~--g~~~~~~~~~ 114 (115)
T cd04040 75 KDDLLGSAYIDLSDLEP-EETTELTLPLDGQ--GGGKLGAVFL 114 (115)
T ss_pred CCCceEEEEEEHHHcCC-CCcEEEEEECcCC--CCccCceEEc
Confidence 79999999999999983 3355578888755 3467787754
No 44
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.79 E-value=6.9e-19 Score=133.62 Aligned_cols=108 Identities=27% Similarity=0.332 Sum_probs=88.4
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEEEe
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFTVS 106 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~~~ 106 (188)
..|.|.|+|++|+||...++.++.||||++.+..+....++|++.+ +..||+|||+|.|.+... ...|.++||..
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~- 91 (124)
T cd08387 14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVFEVPPQELPKRTLEVLLYDF- 91 (124)
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc-CCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC-
Confidence 3589999999999999999999999999999965445678899865 579999999999998743 34677777642
Q ss_pred eecccccCccceEEEEechhhhhcCCCcceeEEeee
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSS 142 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s 142 (188)
+.+..|++||++.++|+++.. .+..+.||+|.+
T Consensus 92 --~~~~~~~~iG~~~i~l~~~~~-~~~~~~W~~l~~ 124 (124)
T cd08387 92 --DQFSRDECIGVVELPLAEVDL-SEKLDLWRKIQS 124 (124)
T ss_pred --CCCCCCceeEEEEEecccccC-CCCcceEEECcC
Confidence 235579999999999999983 467778999853
No 45
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.79 E-value=2.1e-18 Score=136.69 Aligned_cols=122 Identities=17% Similarity=0.257 Sum_probs=93.2
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCC----------CeEeeecccCCCCCCcc-CceeEEEeecCCCcceEE
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE----------NTVTTKIIYAGGSNPVF-NESRQLKVKTVDSSLKSE 101 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~----------~~~~T~v~~~GG~NP~W-Ne~f~f~V~~~~~~L~~e 101 (188)
+..|++++|+||+ .++||+.||||++++.++.+ ++++|++.+ +..||+| ||+|.|.+... ..|.++
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~-~tlnP~W~nE~f~f~v~~~-~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVE-NTINPVWHREQFVFVGLPT-DVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEc-CCCCCceEceEEEEEcCCC-CEEEEE
Confidence 4579999999998 78999999999999975442 478898875 5789999 99999999643 468888
Q ss_pred EEEEeeecccccCccceEEEEechhhhhcC--CCcceeEEeeecCCCCCcceEEEEEE
Q 045047 102 IFTVSRIKSFVEDQLLGFTLVPLSEVLLNN--GKLDTEFSLSSTDFLHSPAGFVQLSL 157 (188)
Q Consensus 102 i~~~~r~~~~~~Dd~IG~a~VpL~ell~~~--G~~~~~~~l~s~d~~~kp~G~V~Lsl 157 (188)
||......+...|++||++.+||++++.+. +....+|++...-.+.+-+|+|.|-+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 875321112224899999999999998531 12336899987766777889988754
No 46
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.79 E-value=1.1e-18 Score=134.70 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=86.0
Q ss_pred ccceEEEEEEEeecCCCCCCC-ccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEE
Q 045047 29 PLASVFLKFIYIARDIHDIGV-YHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEI 102 (188)
Q Consensus 29 ~~~GtLEV~visAkdLkdv~~-fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei 102 (188)
...|.|.|+|++||||...+. .++.||||++++..+. ..+++|++.+ +..||+|||+|.|.|... ...|.++|
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~l~~~~L~~~V 90 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR-NTTNPVYNETLKYSISHSQLETRTLQLSV 90 (125)
T ss_pred CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeee-CCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence 357889999999999998764 6899999999997544 3577899855 689999999999999642 33577777
Q ss_pred EEEeeecccccCccceEEEEechhhhhcCCCcceeEEee
Q 045047 103 FTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLS 141 (188)
Q Consensus 103 ~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~ 141 (188)
|.. +.+..|++||++.+||.++-. ++....||+|.
T Consensus 91 ~d~---~~~~~~~~lG~~~i~l~~~~~-~~~~~~w~~l~ 125 (125)
T cd04029 91 WHY---DRFGRNTFLGEVEIPLDSWNF-DSQHEECLPLH 125 (125)
T ss_pred EEC---CCCCCCcEEEEEEEeCCcccc-cCCcccEEECc
Confidence 642 235689999999999999974 45677899873
No 47
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.78 E-value=1.2e-18 Score=135.82 Aligned_cols=108 Identities=22% Similarity=0.318 Sum_probs=84.9
Q ss_pred cceEEEEEEEeecCCCCCCCc-cCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVY-HKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIF 103 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~f-gKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~ 103 (188)
..+.|.|+|++||||...+.. |..||||+|++..+. ..++||++.+ +-.||+|||+|.|.|... ...|.+.||
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~ 91 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLLSSRQLQVSVW 91 (128)
T ss_pred CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHHhCCcEEEEEEE
Confidence 457999999999999999874 999999999997554 3477899864 689999999999998643 235666665
Q ss_pred EEeeecccccCccceEEEEechhhhhcC-C-CcceeEEee
Q 045047 104 TVSRIKSFVEDQLLGFTLVPLSEVLLNN-G-KLDTEFSLS 141 (188)
Q Consensus 104 ~~~r~~~~~~Dd~IG~a~VpL~ell~~~-G-~~~~~~~l~ 141 (188)
.. ..+.+|++||++.|||+++-..+ + ....||+|.
T Consensus 92 ~~---~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 92 HS---RTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred eC---CCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 32 23568999999999999994333 2 444899873
No 48
>PLN03008 Phospholipase D delta
Probab=99.78 E-value=1.8e-18 Score=169.68 Aligned_cols=146 Identities=12% Similarity=0.239 Sum_probs=113.2
Q ss_pred cceEEEEEEEeecCCCCCCCc------------------------------------------cCCCceEEEEEecCCCC
Q 045047 30 LASVFLKFIYIARDIHDIGVY------------------------------------------HKQDVYATLCLTSDPEN 67 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~f------------------------------------------gKqDpYavl~l~g~~~~ 67 (188)
..|+|+|++..|++|+|.++| +++||||+|.+++ +.
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~--~r 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ--AT 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC--cc
Confidence 689999999999999985543 3569999999954 34
Q ss_pred eEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecccccCccceEEEEechhhhhcCC-CcceeEEeeecCCC
Q 045047 68 TVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNG-KLDTEFSLSSTDFL 146 (188)
Q Consensus 68 ~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G-~~~~~~~l~s~d~~ 146 (188)
..||+|++ .+.||+|||+|.|.|....+.+.++|+ +.+.+++++||++.|||.+|+. | ..+.|++|...+..
T Consensus 90 v~RTrVi~-n~~NPvWNE~F~f~vah~~s~L~f~Vk----D~D~~gaD~IG~a~IPL~~L~~--Ge~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 90 LARTRVLK-NSQEPLWDEKFNISIAHPFAYLEFQVK----DDDVFGAQIIGTAKIPVRDIAS--GERISGWFPVLGASGK 162 (868)
T ss_pred eeeEEeCC-CCCCCCcceeEEEEecCCCceEEEEEE----cCCccCCceeEEEEEEHHHcCC--CCceEEEEEccccCCC
Confidence 55899875 577999999999999887666766664 4566789999999999999983 5 55689999877532
Q ss_pred C-CcceEEEEEEEEeecccccc-----------ccCC----CcccccCcceeEe
Q 045047 147 H-SPAGFVQLSLRYASDELQLM-----------KAKP----KKRKQCGSTIWKQ 184 (188)
Q Consensus 147 ~-kp~G~V~Lsl~f~~~~~~~~-----------~~~p----~~~~~~~~~~~~~ 184 (188)
. ++.|.|+|+|.|.+...++. ...| .-|++|.||.|..
T Consensus 163 p~k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqd 216 (868)
T PLN03008 163 PPKAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQD 216 (868)
T ss_pred CCCCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEecc
Confidence 1 34589999999988655442 2223 2788899999864
No 49
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.78 E-value=7.3e-18 Score=127.06 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=93.9
Q ss_pred EEEEEEEeecCCCCCC--CccCCCceEEEEEecCC---CCeEeeecccCCCCCCccCceeEEEeecCC-CcceEEEEEEe
Q 045047 33 VFLKFIYIARDIHDIG--VYHKQDVYATLCLTSDP---ENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSEIFTVS 106 (188)
Q Consensus 33 tLEV~visAkdLkdv~--~fgKqDpYavl~l~g~~---~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ei~~~~ 106 (188)
.|+|+|++|+||++.+ .+++.||||++++.+.+ ..+.+|+++++.+.||+|||+|.|.+.... +.|.++||.
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d-- 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYD-- 80 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEe--
Confidence 5999999999999998 68999999999997543 367899999988999999999999998554 346667654
Q ss_pred eecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
++...|++||++.+||+++. .| .++++|......-...|.|.+.+.+
T Consensus 81 --~~~~~~~~iG~~~~~l~~l~--~g--~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 81 --EDSGDDDFLGQACLPLDSLR--QG--YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred --CCCCCCcEeEEEEEEhHHhc--Cc--eEEEEecCCCCCCCcceeEEEEEEE
Confidence 33238999999999999985 34 3678887653222346888877765
No 50
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.78 E-value=1.3e-18 Score=130.58 Aligned_cols=102 Identities=19% Similarity=0.313 Sum_probs=83.0
Q ss_pred EEEEEEeecCCCCCCC-ccCCCceEEEEEecCCCCeEeeecccCCCCCCcc-CceeEEEeecC---CCcceEEEEEEeee
Q 045047 34 FLKFIYIARDIHDIGV-YHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVF-NESRQLKVKTV---DSSLKSEIFTVSRI 108 (188)
Q Consensus 34 LEV~visAkdLkdv~~-fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~W-Ne~f~f~V~~~---~~~L~~ei~~~~r~ 108 (188)
|+|+|++||+|++.+. .+..||||++++++ .+++|++++ +..||+| ||+|.|.+... .+.|.++||...
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~---~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d-- 74 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS---TTYKTDVVK-KSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD-- 74 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC---eeEecceec-CCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC--
Confidence 6899999999999884 78999999999976 788899986 5699999 99999999753 346777876421
Q ss_pred cccccCccceEEEEechhhhhc--CCCcceeEEeee
Q 045047 109 KSFVEDQLLGFTLVPLSEVLLN--NGKLDTEFSLSS 142 (188)
Q Consensus 109 ~~~~~Dd~IG~a~VpL~ell~~--~G~~~~~~~l~s 142 (188)
.+..|++||++.++|.++... .+..+.||+|..
T Consensus 75 -~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 75 -TYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -CCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 245789999999999999951 235668999853
No 51
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.78 E-value=4.2e-18 Score=132.17 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=92.1
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC----------CCcceEEE
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV----------DSSLKSEI 102 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~----------~~~L~~ei 102 (188)
.|.|+|++||+|.+.+.+|+.||||++++.+ .+++|++.+ +..||+|||.|.|.+... ...+.++|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN---QSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC---eeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 4899999999999999999999999999976 678899975 589999999999986432 12466777
Q ss_pred EEEeeecccccCccceEEEE-echhhhhc-CC-CcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 103 FTVSRIKSFVEDQLLGFTLV-PLSEVLLN-NG-KLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 103 ~~~~r~~~~~~Dd~IG~a~V-pL~ell~~-~G-~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
|... ....|++||++.+ |+..+... .+ ..++||+|.+. +..+|+|.|++.+.+
T Consensus 78 ~d~d---~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~~~~Geil~~~~~~~ 133 (135)
T cd04017 78 FDQD---SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---GQSAGELLAAFELIE 133 (135)
T ss_pred EeCc---CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC---CCchhheeEEeEEEE
Confidence 6432 2457999999986 66555421 12 23379999765 357999999999865
No 52
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.78 E-value=2.3e-18 Score=130.43 Aligned_cols=106 Identities=24% Similarity=0.307 Sum_probs=84.3
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFT 104 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~ 104 (188)
..+.|.|+|++||||+..+.+++.||||++.+.+++ ..+++|++.+ +..||+|||+|.|.+... ...|.+.||.
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK-DNLNPVFDETFEFPVSLEELKRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEeccccc-CCCCCEECeEEEEecCHHHhcCCEEEEEEEE
Confidence 357899999999999999999999999999997543 4678899876 467999999999999643 2345555553
Q ss_pred Eeeeccc--ccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 105 VSRIKSF--VEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 105 ~~r~~~~--~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
. + .+ ..|++||++.|+|+++.. .+....||+|
T Consensus 93 ~--~-~~~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L 126 (127)
T cd04030 93 S--K-SFLSREKKLLGQVLIDLSDLDL-SKGFTQWYDL 126 (127)
T ss_pred C--C-cccCCCCceEEEEEEecccccc-cCCccceEEC
Confidence 2 1 12 479999999999999863 4566689987
No 53
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.77 E-value=6.9e-18 Score=129.84 Aligned_cols=117 Identities=26% Similarity=0.328 Sum_probs=91.0
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecccc
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFV 112 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~ 112 (188)
.|.|+|++|+ |.+.+.++++||||+|++.+. ...+|++.+ ++.||+|||.|.|.+... ..|.++||.. +...
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~-~t~~P~Wne~f~~~~~~~-~~l~~~V~d~---~~~~ 74 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSK-KTSNPKWNEHFTVLVTPQ-STLEFKVWSH---HTLK 74 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeC-CCCCCccccEEEEEeCCC-CEEEEEEEeC---CCCC
Confidence 6999999999 666666999999999999752 478899865 789999999999998643 4677787643 2355
Q ss_pred cCccceEEEEechhhhhc-CCCcc---eeEEeeecCC-CCCcceEEEEEE
Q 045047 113 EDQLLGFTLVPLSEVLLN-NGKLD---TEFSLSSTDF-LHSPAGFVQLSL 157 (188)
Q Consensus 113 ~Dd~IG~a~VpL~ell~~-~G~~~---~~~~l~s~d~-~~kp~G~V~Lsl 157 (188)
.|++||++.++|++++.+ .|... .++++.+... .++.+|.|++++
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 899999999999999953 23333 3788876532 346789999875
No 54
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=2.9e-18 Score=129.08 Aligned_cols=104 Identities=20% Similarity=0.221 Sum_probs=82.1
Q ss_pred CCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC-CcceEEEEEEeeecccccCccceEEEEec
Q 045047 46 DIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSEIFTVSRIKSFVEDQLLGFTLVPL 124 (188)
Q Consensus 46 dv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL 124 (188)
+..+.|++||||+|.+.+ +...+|++++ ++.||+|||.|.|.+.+.. ..|.++|+. ++.++|++||++.|||
T Consensus 6 ~~~~~G~~dPYv~v~v~~--~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~~~~l~i~v~d----~~~~~d~~iG~~~v~L 78 (111)
T cd04052 6 SESKTGLLSPYAELYLNG--KLVYTTRVKK-KTNNPSWNASTEFLVTDRRKSRVTVVVKD----DRDRHDPVLGSVSISL 78 (111)
T ss_pred ccccCCCCCceEEEEECC--EEEEEEeeec-cCCCCccCCceEEEecCcCCCEEEEEEEE----CCCCCCCeEEEEEecH
Confidence 345679999999999964 3457898865 5899999999999997653 457666653 3433999999999999
Q ss_pred hhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 125 SEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 125 ~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
++++...+..+.||+|.. .++|.|++++.|.+
T Consensus 79 ~~l~~~~~~~~~w~~L~~-----~~~G~i~~~~~~~p 110 (111)
T cd04052 79 NDLIDATSVGQQWFPLSG-----NGQGRIRISALWKP 110 (111)
T ss_pred HHHHhhhhccceeEECCC-----CCCCEEEEEEEEec
Confidence 999854345668999963 46899999999986
No 55
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=4.9e-18 Score=128.09 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=83.4
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC----CCcceEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV----DSSLKSEIF 103 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~----~~~L~~ei~ 103 (188)
..|.|.|+|++|+||...+..++.||||+|.+.++. ..+++|++++ +..||+|||+|.|.+... ...|.++||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK-KTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC-CCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 457899999999999999999999999999997543 3567899865 679999999999996432 346777777
Q ss_pred EEeeecccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 104 TVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 104 ~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
.. +.+..|++||++.++|++.+ . .....||+|
T Consensus 93 d~---~~~~~~~~iG~~~i~l~~~~-~-~~~~~W~~L 124 (125)
T cd04031 93 DY---DRDGENDFLGEVVIDLADAL-L-DDEPHWYPL 124 (125)
T ss_pred eC---CCCCCCcEeeEEEEeccccc-c-cCCcceEEC
Confidence 43 23557999999999999954 2 234579987
No 56
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=7e-18 Score=135.52 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=87.0
Q ss_pred ceEEEEEEEeecCCCCCC-CccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEee
Q 045047 31 ASVFLKFIYIARDIHDIG-VYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSR 107 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~-~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r 107 (188)
.|.|+|+|+.||||...+ ..|..||||++++-.+.+ .+++|++. .+..||+|||+|.|.|......|.++||..
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~-kktlnPvfNE~F~f~v~l~~~~L~v~V~~d-- 104 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIA-RKTLDPLYQQQLVFDVSPTGKTLQVIVWGD-- 104 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceec-CCCCCCccCCeEEEEEcCCCCEEEEEEEeC--
Confidence 489999999999999864 678999999999976543 47889987 589999999999999984445677777631
Q ss_pred ecccccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 108 IKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 108 ~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
...+..|++||++.|||+++-. .+....||.|...
T Consensus 105 ~~~~~~~~~iG~~~i~L~~l~~-~~~~~~Wy~L~~~ 139 (146)
T cd04028 105 YGRMDKKVFMGVAQILLDDLDL-SNLVIGWYKLFPT 139 (146)
T ss_pred CCCCCCCceEEEEEEEcccccC-CCCceeEEecCCc
Confidence 1235579999999999999832 3456689998654
No 57
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=6e-18 Score=136.32 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=81.0
Q ss_pred EEEEEEEeecCCCCCCCcc--------------CCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC--CC
Q 045047 33 VFLKFIYIARDIHDIGVYH--------------KQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV--DS 96 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fg--------------KqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~--~~ 96 (188)
+|.|+|++|+||...+..+ .+||||+|++++ .+.+|++++ ...||+|||+|.|++..+ ..
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g---~~~kT~v~~-~t~nPvWNE~f~f~v~~p~~~~ 76 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG---QKVKTSVKK-NSYNPEWNEQIVFPEMFPPLCE 76 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC---EeeecceEc-CCCCCCcceEEEEEeeCCCcCC
Confidence 4899999999999998665 689999999987 677899977 579999999999998543 34
Q ss_pred cceEEEEEEeeecc-cccCccceEEEEechhhhhcCCC-------cceeEEeee
Q 045047 97 SLKSEIFTVSRIKS-FVEDQLLGFTLVPLSEVLLNNGK-------LDTEFSLSS 142 (188)
Q Consensus 97 ~L~~ei~~~~r~~~-~~~Dd~IG~a~VpL~ell~~~G~-------~~~~~~l~s 142 (188)
.+.++||. ++ ...|++||.+.+||.++.. .|. .+.|+.+..
T Consensus 77 ~l~~~v~D----~d~~~~dd~iG~~~l~l~~l~~-~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 77 RIKIQIRD----WDRVGNDDVIGTHFIDLSKISN-SGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEEEEE----CCCCCCCCEEEEEEEeHHHhcc-CCccccCCccCceEEEeec
Confidence 56666653 34 4589999999999999985 442 237888743
No 58
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.76 E-value=6.9e-18 Score=129.84 Aligned_cols=106 Identities=21% Similarity=0.230 Sum_probs=84.4
Q ss_pred cceEEEEEEEeecCCCCCCCc-cCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVY-HKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIF 103 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~f-gKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~ 103 (188)
..+.|.|+|++||||...+.. |..||||++++..++ ..+++|++++ +..||+|||+|.|.+... ...|.++||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~-~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~ 91 (125)
T cd08393 13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK-KTLNPVFNETLRYKVEREELPTRVLNLSVW 91 (125)
T ss_pred CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCc-CCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 357899999999999999986 899999999997554 3567899876 569999999999999642 246777776
Q ss_pred EEeeecccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 104 TVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 104 ~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
.. +.+..|++||++.|||+++-. .+....||+|
T Consensus 92 d~---~~~~~~~~iG~~~i~L~~~~~-~~~~~~W~~L 124 (125)
T cd08393 92 HR---DSLGRNSFLGEVEVDLGSWDW-SNTQPTWYPL 124 (125)
T ss_pred eC---CCCCCCcEeEEEEEecCcccc-CCCCcceEEC
Confidence 42 235689999999999999952 3455579886
No 59
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.75 E-value=6.4e-18 Score=130.09 Aligned_cols=106 Identities=25% Similarity=0.356 Sum_probs=84.6
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEE-eecC---CCcceEEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLK-VKTV---DSSLKSEIFTV 105 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~-V~~~---~~~L~~ei~~~ 105 (188)
..+.|.|+|++||||...+.-+..||||++.+-.+...+++|+|++ + .||+|||+|.|. +... ...|.++||..
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 4567999999999999999888999999998866666788999976 4 999999999999 6532 24566676532
Q ss_pred eeecccccCccceEEEEechhhhhcCCCcceeEEee
Q 045047 106 SRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLS 141 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~ 141 (188)
+.+..|++||++.|||+++-. .+....||+|.
T Consensus 92 ---~~~~~~~~lG~~~i~L~~l~~-~~~~~~w~~L~ 123 (124)
T cd08389 92 ---ERMRKERLIGEKVVPLSQLNL-EGETTVWLTLE 123 (124)
T ss_pred ---CCcccCceEEEEEEeccccCC-CCCceEEEeCC
Confidence 235679999999999999963 34555798874
No 60
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.75 E-value=1.3e-17 Score=134.83 Aligned_cols=105 Identities=25% Similarity=0.352 Sum_probs=84.9
Q ss_pred CCCccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC--------------------------CeEeeecccCCCC
Q 045047 26 SLLPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE--------------------------NTVTTKIIYAGGS 79 (188)
Q Consensus 26 ~~~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~--------------------------~~~~T~v~~~GG~ 79 (188)
..++..+.|.|+|++||||.+.+.+|++||||+|.+....+ ..++|++.+ ++.
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-~tl 100 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-QTL 100 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec-CCC
Confidence 35678999999999999999999999999999999953211 236787754 689
Q ss_pred CCccCceeEEEeecC-CCcceEEEEEEeeecccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 80 NPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 80 NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
||+|||+|.|.+... ...|.++||. .+ |++||++.+||+++. . +..+.||+|
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D----~d---d~~IG~v~i~l~~l~-~-~~~d~W~~L 153 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWD----HD---DDFLGCVNIPLKDLP-S-CGLDSWFKL 153 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEe----cC---CCeEEEEEEEHHHhC-C-CCCCCeEeC
Confidence 999999999999764 3467777763 23 999999999999998 3 346889986
No 61
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.75 E-value=1.6e-17 Score=125.20 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=84.7
Q ss_pred cceEEEEEEEeecCCCCCC-CccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIG-VYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFTV 105 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~-~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~~ 105 (188)
..+.|.|+|++|+||+..+ .+++.||||++++..+.....+|++.+ ++.||+|||+|.|.+... ...|.++||..
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~-~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKR-KTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEc-CCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 4678999999999999999 799999999999965445667787755 689999999999999753 23577777643
Q ss_pred eeecccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 106 SRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
. ....|++||++.++|+++.. .+..+.|++|
T Consensus 91 ~---~~~~~~~iG~~~i~L~~l~~-~~~~~~w~~L 121 (123)
T cd08390 91 D---RFSRHCIIGHVLFPLKDLDL-VKGGVVWRDL 121 (123)
T ss_pred C---cCCCCcEEEEEEEeccceec-CCCceEEEeC
Confidence 2 34579999999999999984 4455578876
No 62
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.74 E-value=1e-17 Score=133.83 Aligned_cols=90 Identities=26% Similarity=0.357 Sum_probs=79.5
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecc
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKS 110 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~ 110 (188)
.|.|.|+|++|++|+..+. ++.||||++++++ ++.+|++.+ ...||+|||+|.|.+.++...++++||. ++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~---~~~kT~vvk-~t~nP~WnE~f~f~i~~~~~~l~~~V~D----~d 71 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN---QKVKTRVIK-KNLNPVWNEELTLSVPNPMAPLKLEVFD----KD 71 (145)
T ss_pred CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECC---EEEEeeeEc-CCCCCeecccEEEEecCCCCEEEEEEEE----CC
Confidence 4899999999999999887 9999999999976 788999976 4899999999999998877778888864 34
Q ss_pred -cccCccceEEEEechhhhh
Q 045047 111 -FVEDQLLGFTLVPLSEVLL 129 (188)
Q Consensus 111 -~~~Dd~IG~a~VpL~ell~ 129 (188)
+..|++||++.++|.+++.
T Consensus 72 ~~~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 72 TFSKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCCCCCEEEEEEEEHHHhhh
Confidence 5679999999999999985
No 63
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.74 E-value=1e-17 Score=129.79 Aligned_cols=94 Identities=23% Similarity=0.383 Sum_probs=76.6
Q ss_pred ceEEEEEEEeecCCCCCCCc-cCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEE-eecC---CCcceEEEEEE
Q 045047 31 ASVFLKFIYIARDIHDIGVY-HKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLK-VKTV---DSSLKSEIFTV 105 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~f-gKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~-V~~~---~~~L~~ei~~~ 105 (188)
.+.|.|+|++||||+..+.. +..||||+|++..+.++++||++.++ +.||+|||+|.|. ++.. ...|.++||..
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 46899999999999999988 99999999999766567788999764 8999999999994 5422 23466666542
Q ss_pred eeecccccCccceEEEEechhhh
Q 045047 106 SRIKSFVEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~ell 128 (188)
+.+..|++||++.|||+++-
T Consensus 94 ---d~~~~d~~lG~~~i~L~~l~ 113 (128)
T cd08388 94 ---DRYSRDDVIGEVVCPLAGAD 113 (128)
T ss_pred ---CCCCCCceeEEEEEeccccC
Confidence 23668999999999999994
No 64
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.74 E-value=1.5e-17 Score=125.98 Aligned_cols=106 Identities=19% Similarity=0.200 Sum_probs=83.9
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC----CCcceEEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV----DSSLKSEIFTV 105 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~----~~~L~~ei~~~ 105 (188)
..+.|.|+|++|+||+..+.+++.||||++.+..+...+.+|++.+ +..||+|||+|.|.+... ...|.++||..
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-CCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 3578999999999999999999999999999965545678899966 579999999999985321 23467777643
Q ss_pred eeecccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 106 SRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
. .+..|++||++.+||+++.. .+....||.|
T Consensus 93 d---~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~l 123 (125)
T cd08386 93 D---RFSRNDPIGEVSLPLNKVDL-TEEQTFWKDL 123 (125)
T ss_pred C---CCcCCcEeeEEEEecccccC-CCCcceEEec
Confidence 2 35579999999999999973 3355578876
No 65
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.73 E-value=1.5e-17 Score=133.40 Aligned_cols=103 Identities=23% Similarity=0.262 Sum_probs=79.8
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeec-----------C--C---
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKT-----------V--D--- 95 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~-----------~--~--- 95 (188)
|.|+|++||||.. ..|..||||+|++.++. ..+++|++.+ +..||+|||+|.|.+.. + +
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 8999999999998 56899999999998643 2567899876 68999999999999951 1 1
Q ss_pred CcceEEEEEEeeecc-cccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 96 SSLKSEIFTVSRIKS-FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 96 ~~L~~ei~~~~r~~~-~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
..|.++|| +++ +..|++||++.|||.++..+.+....||+|...
T Consensus 79 ~~L~i~V~----d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~ 123 (148)
T cd04010 79 LELRVDLW----HASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPR 123 (148)
T ss_pred EEEEEEEE----cCCCCCCCceeEEEEEecccccccCCcCcceeecCCc
Confidence 23455554 333 458999999999999997422456789999654
No 66
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.73 E-value=2.1e-17 Score=128.71 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=84.3
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC---CCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP---ENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIF 103 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~---~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~ 103 (188)
..|.|.|+|+.||||...+.-+..||||++++-.+. ..+++|++.++ ..||+|||+|.|+|... +..|.+.||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence 457899999999999999877889999999997665 35889998765 89999999999999743 346766776
Q ss_pred EEeeecccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 104 TVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 104 ~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
.. .++..+++||++.|+|+++-...+....||.|
T Consensus 91 ~~---~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SV---GPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eC---CCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 43 24557999999999999994222245578865
No 67
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=2.5e-17 Score=123.29 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=78.2
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC-----CcceEEEEEEe
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD-----SSLKSEIFTVS 106 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-----~~L~~ei~~~~ 106 (188)
-.|.|+|++||||. .++.||||++++.+ ++++|++.+ +..||+|||+|.|.+..+. +.|.++||..
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~---~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~- 74 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGG---QKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDS- 74 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECC---EeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcC-
Confidence 46899999999999 57899999999976 678899854 6789999999999985432 3466666532
Q ss_pred eecccccCccceEEEEechhhhhcC--CCcceeEEeee
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLLNN--GKLDTEFSLSS 142 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~~~--G~~~~~~~l~s 142 (188)
+.+..|++||++.++|+++..+. +-.+.||+|..
T Consensus 75 --~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 75 --RSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred --cccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 23567999999999999998531 23457998864
No 68
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.72 E-value=3e-17 Score=128.80 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=77.8
Q ss_pred CCccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeec--CCCcceEEEEE
Q 045047 27 LLPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKT--VDSSLKSEIFT 104 (188)
Q Consensus 27 ~~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~--~~~~L~~ei~~ 104 (188)
...+.|+|.|+|++|++|.. +++++.||||+|++++ .+.+|++.+ ...||+|||+|.|.... ....|.++||.
T Consensus 23 ~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~---~~~kT~vi~-~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D 97 (127)
T cd04032 23 TRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG---QEKRTEVIW-NNNNPRWNATFDFGSVELSPGGKLRFEVWD 97 (127)
T ss_pred CcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC---ccccCceec-CCCCCcCCCEEEEecccCCCCCEEEEEEEe
Confidence 45688999999999999984 7899999999999976 588899986 46899999999998543 34578888874
Q ss_pred EeeecccccCccceEEEEechhhh
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell 128 (188)
.. .+..|++||++.++|....
T Consensus 98 ~d---~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 98 RD---NGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CC---CCCCCCeeEEEEEEecCCc
Confidence 32 2458999999999999664
No 69
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.72 E-value=4.4e-17 Score=127.94 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=84.6
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecC-CCCeEeeecccCCCCCCccCceeEEEeecC----------------CC
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSD-PENTVTTKIIYAGGSNPVFNESRQLKVKTV----------------DS 96 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~-~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~----------------~~ 96 (188)
|.|+|++|+||... .++++||||+|++.+. ...+++|++++. +.||+|||+|.|.+... ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence 68999999999999 8999999999999731 146788999774 89999999999999764 23
Q ss_pred cceEEEEEEeeecccccCccceEEEEechhhhhcCCCcceeEEeeecC
Q 045047 97 SLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTD 144 (188)
Q Consensus 97 ~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d 144 (188)
.+.++||... ....|++||++.|||.+++ ..|....||+|....
T Consensus 79 ~l~i~V~d~~---~~~~~~~IG~~~i~l~~l~-~~~~~~~W~~L~~~~ 122 (137)
T cd08675 79 ELRVELWHAS---MVSGDDFLGEVRIPLQGLQ-QAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEEcCC---cCcCCcEEEEEEEehhhcc-CCCcccceEecCCcC
Confidence 5666665322 2347999999999999998 456777999997764
No 70
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.72 E-value=3.7e-17 Score=127.85 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=73.9
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecC-CCCeEeeecccCCCCCCccCceeEEEeecCC---CcceEEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSD-PENTVTTKIIYAGGSNPVFNESRQLKVKTVD---SSLKSEIFTV 105 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~-~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~---~~L~~ei~~~ 105 (188)
..|.|.|+|+.|+||+ ..|..||||++++..+ ...+++|+|. ....||+|||+|.|.|+... ..|.+.||.
T Consensus 12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~-rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d- 86 (118)
T cd08677 12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALK-KLALHTQWEEELVFPLPEEESLDGTLTLTLRC- 86 (118)
T ss_pred cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEccee-cCCCCCccccEEEEeCCHHHhCCcEEEEEEEe-
Confidence 4689999999999999 4688999999999743 3467778774 58999999999999997432 346555553
Q ss_pred eeecccccCccceEEEEechhhh
Q 045047 106 SRIKSFVEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~ell 128 (188)
. +++..+++||++.+||.++-
T Consensus 87 -~-Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 87 -C-DRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred -C-CCCCCCceEEEEEEcccccc
Confidence 3 25789999999999999873
No 71
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.71 E-value=6.2e-17 Score=125.33 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=76.8
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC----CCeEeeecccCCCCCCccCceeEEEeecC-----CCcceEE
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP----ENTVTTKIIYAGGSNPVFNESRQLKVKTV-----DSSLKSE 101 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~----~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-----~~~L~~e 101 (188)
.+.|.|+|++|++|+..+.+++.||||+|++.+.. ..+++|++.+ +..||+|||+|.|.+... ...|.++
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCc-CCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 56899999999999999999999999999997543 3578899876 558999999999999742 2356666
Q ss_pred EEEEeeecccccCccceEEEEechhhh
Q 045047 102 IFTVSRIKSFVEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 102 i~~~~r~~~~~~Dd~IG~a~VpL~ell 128 (188)
||.. +.+..|++||++.+||+++.
T Consensus 94 V~d~---d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 94 VKDY---DLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EEec---CCCCCCcEeEEEEEeHHHCC
Confidence 6532 12456999999999999998
No 72
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.71 E-value=1.6e-17 Score=126.12 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=85.6
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFT 104 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~ 104 (188)
..|.|.|+|++|+||++.+..+.+||||++++.++.. .+++|++.+ ++.||.|||+|.|.+... ...|.++||.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQLEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHHhCCcEEEEEEEe
Confidence 3578999999999999999999999999999976432 366898866 789999999999999754 3567777764
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
.. ....|++||++.++|++ . + ...+.||.|...
T Consensus 91 ~~---~~~~~~~lG~~~i~l~~-~-~-~~~~~W~~l~~~ 123 (134)
T cd00276 91 KD---SVGRNEVIGQVVLGPDS-G-G-EELEHWNEMLAS 123 (134)
T ss_pred cC---CCCCCceeEEEEECCCC-C-C-cHHHHHHHHHhC
Confidence 32 24689999999999999 3 2 345578888765
No 73
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.70 E-value=3.6e-16 Score=125.91 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=95.8
Q ss_pred cCCCCccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCe-EeeecccCCCCCCccCceeEEEeecCCCcceEEE
Q 045047 24 LISLLPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENT-VTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEI 102 (188)
Q Consensus 24 ~~~~~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~-~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei 102 (188)
.|+.....-.|.|.|+.||+|.-.+ ||||.|++.+ ++ .||++.. .+.||.|||.|.|........+.+.|
T Consensus 3 ~~n~~R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~---~~vaRT~v~~-~~~nP~W~E~F~f~~~~~~~~l~v~v 73 (146)
T cd04013 3 RDNSRRTENSLKLWIIEAKGLPPKK-----RYYCELCLDK---TLYARTTSKL-KTDTLFWGEHFEFSNLPPVSVITVNL 73 (146)
T ss_pred cccceEEEEEEEEEEEEccCCCCcC-----CceEEEEECC---EEEEEEEEEc-CCCCCcceeeEEecCCCcccEEEEEE
Confidence 3444556678999999999997644 8999999976 55 5898865 46799999999998655445566666
Q ss_pred EEEeeecc-cccCccceEEEEechhhhhcCCCcceeEEeeecCCCC--------CcceEEEEEEEEeec
Q 045047 103 FTVSRIKS-FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLH--------SPAGFVQLSLRYASD 162 (188)
Q Consensus 103 ~~~~r~~~-~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~--------kp~G~V~Lsl~f~~~ 162 (188)
+..+.... ..+|++||.+.||+.+|.. ....++||+|...+... +..|.|++.+.|.+.
T Consensus 74 ~k~~~~~~~~~~~~~IG~V~Ip~~~l~~-~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 74 YRESDKKKKKDKSQLIGTVNIPVTDVSS-RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred EEccCccccccCCcEEEEEEEEHHHhcC-CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 52211111 2279999999999999983 23667999998775432 345799999999874
No 74
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.69 E-value=1.2e-16 Score=122.63 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=82.8
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFT 104 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~ 104 (188)
..|.|.|+|++|+||.+.+.++..||||++++.++. ..+++|++.+ ++.||+|||+|.|.+... ...|.++||.
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDLAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence 468999999999999999999999999999997543 2467898876 799999999999998743 2457777764
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEeee
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSS 142 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s 142 (188)
. +....|++||++.++|.+. + .....||.+..
T Consensus 90 ~---d~~~~~~~lG~~~i~l~~~--~-~~~~~W~~~l~ 121 (133)
T cd08384 90 K---DIGKSNDYIGGLQLGINAK--G-ERLRHWLDCLK 121 (133)
T ss_pred C---CCCCCccEEEEEEEecCCC--C-chHHHHHHHHh
Confidence 2 1245799999999999852 1 23346777643
No 75
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.69 E-value=9.1e-17 Score=124.17 Aligned_cols=106 Identities=20% Similarity=0.186 Sum_probs=80.1
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecC--CCCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSD--PENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFT 104 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~--~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~ 104 (188)
..|+|.|+|++|+||+..+.+++.||||+|.+... ...+++|++.+ ++.||+|||+|.|.+... ...|.++||.
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERLRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence 46889999999999999999999999999999532 23467898865 789999999999998632 2356677764
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEeee
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSS 142 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s 142 (188)
. +.+..|++||++.+|+.+.- .....|+.+..
T Consensus 92 ~---~~~~~~~~lG~~~i~~~~~~---~~~~~w~~~~~ 123 (136)
T cd08405 92 K---DRLSRNDLIGKIYLGWKSGG---LELKHWKDMLS 123 (136)
T ss_pred C---CCCCCCcEeEEEEECCccCC---chHHHHHHHHh
Confidence 2 23557999999999998751 12334555544
No 76
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.68 E-value=4e-16 Score=119.44 Aligned_cols=107 Identities=23% Similarity=0.310 Sum_probs=87.7
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC--CCcceEEEEEEee
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV--DSSLKSEIFTVSR 107 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~--~~~L~~ei~~~~r 107 (188)
|.|.|+|++|++|+..+..+..||||++.+.+.+ ..+++|++.+ +..||.|||+|.|.+... ...|.++||..
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~-- 89 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPADKDRRLSIEVWDW-- 89 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec-CCCCCCccceEEEeCCchhcCCEEEEEEEEC--
Confidence 8899999999999999999999999999997543 3578899865 579999999999998754 34577777642
Q ss_pred ecccccCccceEEEEechhhhhcCCCcceeEEeeecC
Q 045047 108 IKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTD 144 (188)
Q Consensus 108 ~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d 144 (188)
+....|++||++.+||+++.. ...+.||.|...+
T Consensus 90 -~~~~~~~~iG~~~~~l~~l~~--~~~~~w~~L~~~~ 123 (131)
T cd04026 90 -DRTTRNDFMGSLSFGVSELIK--MPVDGWYKLLNQE 123 (131)
T ss_pred -CCCCCcceeEEEEEeHHHhCc--CccCceEECcCcc
Confidence 235589999999999999983 3556899997764
No 77
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.68 E-value=1.9e-16 Score=122.10 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=80.0
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecCC---CcceEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTVD---SSLKSEIFT 104 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~---~~L~~ei~~ 104 (188)
..|.|.|+|++|++|++.+.+|+.||||+|.+..++ ..+++|++ ..++.||+|||+|.|.+.... ..|.++||.
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSV-KKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCc-ccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence 468999999999999999999999999999996433 24667887 568999999999999986322 246777763
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
. +.+..|++||++.+|+... + .....|+.+...
T Consensus 91 ~---~~~~~~~~IG~~~l~~~~~--~-~~~~~w~~~~~~ 123 (134)
T cd08403 91 Y---DRVGHNELIGVCRVGPNAD--G-QGREHWNEMLAN 123 (134)
T ss_pred C---CCCCCCceeEEEEECCCCC--C-chHHHHHHHHHC
Confidence 2 1345699999999998722 1 123346655443
No 78
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.68 E-value=7.1e-16 Score=116.88 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=79.0
Q ss_pred EEEeecCCCCCCCccCCCceEEEEEecCC----CCeEeeecccCCCCCCccCceeEEEee-cCCCcceEEEEEEeeec-c
Q 045047 37 FIYIARDIHDIGVYHKQDVYATLCLTSDP----ENTVTTKIIYAGGSNPVFNESRQLKVK-TVDSSLKSEIFTVSRIK-S 110 (188)
Q Consensus 37 ~visAkdLkdv~~fgKqDpYavl~l~g~~----~~~~~T~v~~~GG~NP~WNe~f~f~V~-~~~~~L~~ei~~~~r~~-~ 110 (188)
..++|++|.+.+++|++||||++.+.+.. ...++|++++ +..||+|||+|.|.+. +....|.++||...... +
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~ 83 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD 83 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeC-CCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC
Confidence 34899999999999999999999998753 1247898876 5799999999999875 33456888888643100 1
Q ss_pred cccCccceEEEEechhhhhcCCCcceeEEee
Q 045047 111 FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLS 141 (188)
Q Consensus 111 ~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~ 141 (188)
..+|++||++.+||++++.+ .....+|.|.
T Consensus 84 ~~~~d~iG~~~i~l~~l~~~-~~~~~~~~l~ 113 (120)
T cd04048 84 LSDHDFLGEAECTLGEIVSS-PGQKLTLPLK 113 (120)
T ss_pred CCCCcEEEEEEEEHHHHhcC-CCcEEEEEcc
Confidence 56899999999999999942 2334577773
No 79
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=4.6e-16 Score=117.93 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=76.1
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEE-eecC---CCcceEEEEE
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLK-VKTV---DSSLKSEIFT 104 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~-V~~~---~~~L~~ei~~ 104 (188)
.+.|.|+|++|++|++.+++++.||||++.+.+++ ..+++|++.+ ++.||+|||+|.|. +... ...+.++||.
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d 92 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH-KTRNPEFNETLTYYGITEEDIQRKTLRLLVLD 92 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec-CCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence 57899999999999999999999999999996433 3578899976 46999999999996 3322 2457777764
Q ss_pred EeeecccccCccceEEEEechhhhh
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLL 129 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~ 129 (188)
. +.++|++||++.++|+++..
T Consensus 93 ~----~~~~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 93 E----DRFGNDFLGETRIPLKKLKP 113 (123)
T ss_pred c----CCcCCeeEEEEEEEcccCCC
Confidence 2 32289999999999999984
No 80
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.67 E-value=4e-16 Score=126.10 Aligned_cols=111 Identities=14% Similarity=0.172 Sum_probs=86.6
Q ss_pred CCccceEEEEEEEeecCCCCCCCccCCCceEEEEEecC--CCCeEeeecccCCCCCCccCceeEEEeecC----CCcceE
Q 045047 27 LLPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSD--PENTVTTKIIYAGGSNPVFNESRQLKVKTV----DSSLKS 100 (188)
Q Consensus 27 ~~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~--~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~----~~~L~~ 100 (188)
.....|.|.|+|++|+||+..+.++..||||++++..+ ...+++|+|+++ ..||+|||+|.|.+... ...|.+
T Consensus 22 ~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i 100 (162)
T cd04020 22 KKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLEL 100 (162)
T ss_pred cCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEE
Confidence 44478999999999999999999999999999999643 246788999875 69999999999986322 235777
Q ss_pred EEEEEeeecccccCccceEEEEechhhhhcCCCcceeEEeee
Q 045047 101 EIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSS 142 (188)
Q Consensus 101 ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s 142 (188)
+||... .+..|++||++.++|.++.. .|..+.||.+..
T Consensus 101 ~V~d~d---~~~~d~~lG~v~i~l~~~~~-~~~~~~w~~~~~ 138 (162)
T cd04020 101 TVWDHD---KLSSNDFLGGVRLGLGTGKS-YGQAVDWMDSTG 138 (162)
T ss_pred EEEeCC---CCCCCceEEEEEEeCCcccc-CCCccccccCCh
Confidence 776421 24569999999999999863 565666776643
No 81
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.67 E-value=2.6e-16 Score=121.61 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=81.0
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecCC---CcceEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTVD---SSLKSEIFT 104 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~~---~~L~~ei~~ 104 (188)
..|.|.|+|++|+||++.+..++.||||+|++.++.+ .+++|++ ..++.||+|||+|.|.+.... ..|.++||.
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccc-eeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence 4588999999999999999999999999999964332 4567876 568999999999999986432 256677763
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
. +.+..|++||++.|++... + .....|+.+...
T Consensus 92 ~---~~~~~~~~iG~~~i~~~~~--~-~~~~~W~~~~~~ 124 (136)
T cd08402 92 Y---DRIGKNDPIGKVVLGCNAT--G-AELRHWSDMLAS 124 (136)
T ss_pred C---CCCCCCceeEEEEECCccC--C-hHHHHHHHHHhC
Confidence 2 1355799999999999753 1 234457666443
No 82
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=4.7e-16 Score=119.52 Aligned_cols=91 Identities=22% Similarity=0.287 Sum_probs=74.2
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeeccc
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSF 111 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~ 111 (188)
.|.|+|++|+||++.+.+++.||||++++++.. ...+|.+.+ ++.||+|||+|.|.+..+ .+.|.++||.. +.+
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-~~~kT~~v~-~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~---d~~ 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK-INDRDNYIP-NTLNPVFGKMFELEATLPGNSILKISVMDY---DLL 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCee-ccceeeEEE-CCCCCccceEEEEEecCCCCCEEEEEEEEC---CCC
Confidence 378999999999999999999999999997532 234577766 499999999999998644 35677788643 235
Q ss_pred ccCccceEEEEechhhh
Q 045047 112 VEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell 128 (188)
..|++||++.++|.+.+
T Consensus 76 ~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 76 GSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCceeEEEEEeecccc
Confidence 58999999999999987
No 83
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.65 E-value=1.6e-15 Score=118.81 Aligned_cols=111 Identities=16% Similarity=0.250 Sum_probs=79.2
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeee---
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRI--- 108 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~--- 108 (188)
|.|+|++|+||+ +-.||||+|.+.+.. ..+.+|+++ .+..||+|||+|.|.++. ...|.+.+|...++
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i-~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVC-RDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeee-cCCCCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence 689999999997 448999999996433 356899998 589999999999999974 45788888765322
Q ss_pred -cccccCccceEEEEechh-hhhcCCCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 109 -KSFVEDQLLGFTLVPLSE-VLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 109 -~~~~~Dd~IG~a~VpL~e-ll~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
+....|+++|.+.|.|.- .+..+|.....+.+.- . +|.+|++|
T Consensus 74 ~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~~-------~-~~~~s~~~ 118 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMNG-------I-TVNLSIKF 118 (118)
T ss_pred ccccCcccEEEEEEEEECHHHhccCCeeEEEEEecC-------E-EEEEEEeC
Confidence 235679999999999943 3323333333444321 1 56666655
No 84
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.65 E-value=7.8e-16 Score=120.49 Aligned_cols=105 Identities=23% Similarity=0.316 Sum_probs=79.5
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecC--C-CcceEEEEEE
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTV--D-SSLKSEIFTV 105 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~--~-~~L~~ei~~~ 105 (188)
.+.|.|+|++||||...+ ++.+||||+|++.++.+ .+++|++ +.++.||+|||+|.|.|+.. . ..|.++||..
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v-~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEV-VDGAASPSFNESFSFKVTSRQLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeeccc-EeCCCCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence 478999999999999999 99999999999986533 4678988 45899999999999999632 2 3577777642
Q ss_pred eeecccccCccceEEEEechhhhhcCC-CcceeEEeee
Q 045047 106 SRIKSFVEDQLLGFTLVPLSEVLLNNG-KLDTEFSLSS 142 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~ell~~~G-~~~~~~~l~s 142 (188)
+.+..|++||++.|+....- .| ....|+.+..
T Consensus 92 ---~~~~~~~~lG~v~ig~~~~~--~~~~~~hW~~~~~ 124 (137)
T cd08409 92 ---GGVRKSKLLGRVVLGPFMYA--RGKELEHWNDMLS 124 (137)
T ss_pred ---CCCCCcceEEEEEECCcccC--CChHHHHHHHHHh
Confidence 23678999999999965442 23 2334555443
No 85
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.65 E-value=8.6e-16 Score=118.93 Aligned_cols=107 Identities=16% Similarity=0.175 Sum_probs=81.1
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFT 104 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~ 104 (188)
..+.|.|+|++|+||+..+.+|+.||||+|.+.++.+ .+.+|+|.+ +..||+|||+|.|.+... ...|.++||.
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 3568999999999999999999999999999965432 356788765 679999999999999632 2345556653
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
. +.+..|++||++.+++.+ . +. ....|+.+...
T Consensus 92 ~---d~~~~~~~iG~~~~~~~~-~-~~-~~~~w~~l~~~ 124 (136)
T cd08404 92 S---DRVTKNEVIGRLVLGPKA-S-GS-GGHHWKEVCNP 124 (136)
T ss_pred C---CCCCCCccEEEEEECCcC-C-Cc-hHHHHHHHHhC
Confidence 2 235689999999999998 3 22 34467776543
No 86
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.64 E-value=7.3e-16 Score=161.89 Aligned_cols=120 Identities=16% Similarity=0.242 Sum_probs=99.9
Q ss_pred CccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC--CcceEEEEEE
Q 045047 28 LPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD--SSLKSEIFTV 105 (188)
Q Consensus 28 ~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~--~~L~~ei~~~ 105 (188)
+...|.|.|+|++|+||+ ..||++||||+|+++. +++.+|+|.+ .++||+|||.|.|.++++. ..+.+|+|
T Consensus 1976 ~~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~~~~~l~iev~-- 2048 (2102)
T PLN03200 1976 QCLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN--GPPRQTKVVS-HSSSPEWKEGFTWAFDSPPKGQKLHISCK-- 2048 (2102)
T ss_pred hhCCcceEEEEeeccccc--cccCCCCCeEEEEECC--CCcccccccC-CCCCCCcccceeeeecCCCCCCceEEEEE--
Confidence 346899999999999999 7799999999999975 3566799866 7999999999999998776 34666765
Q ss_pred eeecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceE---EEEEEEEe
Q 045047 106 SRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGF---VQLSLRYA 160 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~---V~Lsl~f~ 160 (188)
+++.++|+.+|.+.|+|.+|+ .+|....||+|... ++..|. |++++.+.
T Consensus 2049 --d~d~f~kd~~G~~~i~l~~vv-~~~~~~~~~~L~~~---~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2049 --SKNTFGKSSLGKVTIQIDRVV-MEGTYSGEYSLNPE---SNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred --ecCccCCCCCceEEEEHHHHh-cCceeeeeeecCcc---cccCCCcceEEEEEEec
Confidence 456668889999999999999 47899999999853 345777 99988775
No 87
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.64 E-value=1.4e-15 Score=104.78 Aligned_cols=84 Identities=27% Similarity=0.362 Sum_probs=69.8
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC-CcceEEEEEEeeecccc
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSEIFTVSRIKSFV 112 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ei~~~~r~~~~~ 112 (188)
|+|+|++|+||...+..++.||||++.+.+.+..+++|++.+++ .||.|||+|.|.+.... +.|.++||.. +...
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~~~V~~~---~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT-SNPVWNEEFEFPLDDPDLDSLSFEVWDK---DSFG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB-SSEEEEEEEEEEESHGCGTEEEEEEEEE---TSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc-ccceeeeeeeeeeecccccceEEEEEEC---CCCC
Confidence 79999999999999999999999999999866667889998755 99999999999986443 4588888743 2244
Q ss_pred cCccceEEE
Q 045047 113 EDQLLGFTL 121 (188)
Q Consensus 113 ~Dd~IG~a~ 121 (188)
.|++||+|.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 599999984
No 88
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.63 E-value=5.7e-15 Score=119.98 Aligned_cols=122 Identities=20% Similarity=0.253 Sum_probs=92.7
Q ss_pred EEEEEEEeecCCC--CCCCccCCCceEEEEE--ecCCCCeEeeecccCCCCCCccCceeEEEeecCC---------Ccce
Q 045047 33 VFLKFIYIARDIH--DIGVYHKQDVYATLCL--TSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD---------SSLK 99 (188)
Q Consensus 33 tLEV~visAkdLk--dv~~fgKqDpYavl~l--~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~---------~~L~ 99 (188)
.+|++++.|++++ ...-=+..|||+++++ .++..++.+|+|.+ +-.||+|||+|.|.|...+ ..|+
T Consensus 3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k-~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~ 81 (155)
T cd08690 3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIK-DTNSPEYNESFKLNINRKHRSFQRVFKRHGLK 81 (155)
T ss_pred ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCccc-CCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence 4689999999965 4444457999999997 33445788898866 7899999999999997542 3588
Q ss_pred EEEEEEeeecccc-cCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 100 SEIFTVSRIKSFV-EDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 100 ~ei~~~~r~~~~~-~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
++||.. ..++ .|++||+|.|+|+.+.. +.....+|+|... ...-.|.|++.++...
T Consensus 82 ~~V~d~---~~f~~~D~~iG~~~i~L~~l~~-~~~~~~~~~L~~~--~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 82 FEVYHK---GGFLRSDKLLGTAQVKLEPLET-KCEIHESVDLMDG--RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEEeC---CCcccCCCeeEEEEEEcccccc-cCcceEEEEhhhC--CCCcCCEEEEEEEecC
Confidence 888743 1343 69999999999999974 3355679998743 2245789999999875
No 89
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=9.8e-16 Score=119.30 Aligned_cols=108 Identities=16% Similarity=0.167 Sum_probs=78.5
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC--C-CcceEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV--D-SSLKSEIFT 104 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~--~-~~L~~ei~~ 104 (188)
..|.|+|+|++|++|+..+.+++.||||++++.++. ..+++|++.+ ++.||+|||+|.|.+... . ..|.++||.
T Consensus 12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d 90 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEELENVSLVFTVYG 90 (135)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcccc-CCCCCccceeEEEeCCHHHhCCCEEEEEEEe
Confidence 348899999999999999999999999999985322 3457788854 689999999999999632 2 246666653
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
. +....|++||++.+..... +......|+.+...
T Consensus 91 ~---d~~~~~~~iG~~~l~~~~~--~~~~~~~W~~l~~~ 124 (135)
T cd08410 91 H---NVKSSNDFIGRIVIGQYSS--GPSETNHWRRMLNS 124 (135)
T ss_pred C---CCCCCCcEEEEEEEcCccC--CchHHHHHHHHHhC
Confidence 2 2356899999998765333 11134456665443
No 90
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.61 E-value=2.8e-15 Score=118.35 Aligned_cols=92 Identities=18% Similarity=0.223 Sum_probs=73.9
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEEE
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFTV 105 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~~ 105 (188)
.+.|.|+|++||||...+..+..||||+|++-.++. .+++|+|.+ +..||+|||+|.|.|+.. ...|.+.||..
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~ 92 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR-DDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES 92 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc-CCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence 457999999999999999899999999999976543 366788865 669999999999999743 23566666532
Q ss_pred eeecccccCccceEEEEechh
Q 045047 106 SRIKSFVEDQLLGFTLVPLSE 126 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~e 126 (188)
+++.+|++||++.++...
T Consensus 93 ---d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 93 ---TEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred ---CCCCCCCeeEEEEECCCC
Confidence 246789999999998764
No 91
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.61 E-value=3.4e-15 Score=110.95 Aligned_cols=89 Identities=19% Similarity=0.327 Sum_probs=70.5
Q ss_pred EEEEeecCCCCCCCccCCCceEEEEEecCC---CCeEeeecccCCCCCCccCceeEEEeecC-----CCcceEEEEEEee
Q 045047 36 KFIYIARDIHDIGVYHKQDVYATLCLTSDP---ENTVTTKIIYAGGSNPVFNESRQLKVKTV-----DSSLKSEIFTVSR 107 (188)
Q Consensus 36 V~visAkdLkdv~~fgKqDpYavl~l~g~~---~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-----~~~L~~ei~~~~r 107 (188)
+-.++|++|++.+++++.||||+|++.+.. ...++|+++++ ..||+|| +|.|.+... ...|.++||...
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d- 80 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD- 80 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC-
Confidence 445799999999999999999999997632 23588999874 5999999 788876432 346778887532
Q ss_pred ecccccCccceEEEEechhhhh
Q 045047 108 IKSFVEDQLLGFTLVPLSEVLL 129 (188)
Q Consensus 108 ~~~~~~Dd~IG~a~VpL~ell~ 129 (188)
....|++||++.++|++++.
T Consensus 81 --~~~~d~~iG~~~~~l~~l~~ 100 (110)
T cd04047 81 --SSGKHDLIGEFETTLDELLK 100 (110)
T ss_pred --CCCCCcEEEEEEEEHHHHhc
Confidence 34579999999999999983
No 92
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.59 E-value=5.5e-15 Score=116.49 Aligned_cols=107 Identities=14% Similarity=0.258 Sum_probs=81.9
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC-C--CeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP-E--NTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIF 103 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~-~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~ 103 (188)
..|.|.|+|++||||...+..+..||||++++..+. + .+++|++.+ +..||+|||+|.|.|+.. ...|.+.||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~-~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRR-GQPDPEFKETFVFQVALFQLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeec-CCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence 568999999999999999999999999999997432 2 367899875 779999999999999743 236666666
Q ss_pred EEeeecccccCccceEEEEechhhhhcCCCcceeEEeee
Q 045047 104 TVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSS 142 (188)
Q Consensus 104 ~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s 142 (188)
.. +++..|++||++.+++...- .+....|+.+..
T Consensus 92 ~~---~~~~~~~~iG~v~l~~~~~~--~~~~~hW~~~l~ 125 (138)
T cd08408 92 NK---RKMKRKEMIGWFSLGLNSSG--EEEEEHWNEMKE 125 (138)
T ss_pred EC---CCCCCCcEEEEEEECCcCCC--chHHHHHHHHHh
Confidence 43 23678999999999987431 122345766644
No 93
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.59 E-value=6.9e-15 Score=116.87 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=73.4
Q ss_pred cceEEEEEEEeecCCCCCC--CccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecC---CCcceEEE
Q 045047 30 LASVFLKFIYIARDIHDIG--VYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEI 102 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~--~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei 102 (188)
..|.|.|+|+.||||+..+ -.+..||||+|++..+.+ .+++|++. .+..||+|||+|.|.|+.. ...|.++|
T Consensus 13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~-k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V 91 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRA-KHKINPVWNEMIMFELPSELLAASSVELEV 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceecccee-eCCCCCccccEEEEECCHHHhCccEEEEEE
Confidence 4578999999999999987 234499999999986543 36688876 5799999999999999743 23577777
Q ss_pred EEEeeecccccCccceEEEEechh
Q 045047 103 FTVSRIKSFVEDQLLGFTLVPLSE 126 (188)
Q Consensus 103 ~~~~r~~~~~~Dd~IG~a~VpL~e 126 (188)
|.. +.+..|++||++.+++..
T Consensus 92 ~d~---d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 92 LNQ---DSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EeC---CCCcCcceeceEEecCcC
Confidence 642 236689999999999964
No 94
>PLN02270 phospholipase D alpha
Probab=99.58 E-value=2.8e-14 Score=139.92 Aligned_cols=146 Identities=21% Similarity=0.336 Sum_probs=113.7
Q ss_pred cceEEEEEEEeecCCCCCC---Cc-------------c--CCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEe
Q 045047 30 LASVFLKFIYIARDIHDIG---VY-------------H--KQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKV 91 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~---~f-------------g--KqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V 91 (188)
..|+|+|+++.|++|+|.+ +| + ..||||.|.+.+ ..--||+++.+--.||+|||.|.+.+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~--a~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK--ARVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC--cEEEEEeecCCCCCCCccccceEEee
Confidence 5799999999999999831 22 2 249999999976 23448999988788999999999999
Q ss_pred ecCCCcceEEEEEEeeecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcc-e--EEEEEEEEeeccccccc
Q 045047 92 KTVDSSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPA-G--FVQLSLRYASDELQLMK 168 (188)
Q Consensus 92 ~~~~~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~-G--~V~Lsl~f~~~~~~~~~ 168 (188)
....+.+.+.| ++.++++..+||.+.||+.+|+.+ ..++.||++...+ ++|. | .|+|++.|.+...++.+
T Consensus 84 ah~~~~v~f~v----kd~~~~g~~~ig~~~~p~~~~~~g-~~i~~~~~~~~~~--~~p~~~~~~~~~~~~f~~~~~~~~~ 156 (808)
T PLN02270 84 AHMASNIIFTV----KDDNPIGATLIGRAYIPVEEILDG-EEVDRWVEILDND--KNPIHGGSKIHVKLQYFEVTKDRNW 156 (808)
T ss_pred ccCcceEEEEE----ecCCccCceEEEEEEEEHHHhcCC-CccccEEeccCCC--CCcCCCCCEEEEEEEEEEcccCcch
Confidence 87766554444 667899999999999999999942 2677999998775 3442 2 79999999987665541
Q ss_pred ----------cCCC----cccccCcceeEe
Q 045047 169 ----------AKPK----KRKQCGSTIWKQ 184 (188)
Q Consensus 169 ----------~~p~----~~~~~~~~~~~~ 184 (188)
..|. -|++|.||.|..
T Consensus 157 ~~gv~~~~~~gvp~t~f~~r~g~~vtlyqd 186 (808)
T PLN02270 157 GRGIRSAKFPGVPYTFFSQRQGCKVSLYQD 186 (808)
T ss_pred hcccCCcCcCCCCCcccccCCCCeeEEecc
Confidence 2222 788899999864
No 95
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.49 E-value=1.6e-13 Score=109.62 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=74.6
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEee
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSR 107 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r 107 (188)
..|.|.|+|++||+|+....-+..||||+|++-++++ .+++|++.++-+-||+|||+|.|.|+.......+.|.+ +
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v--~ 89 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKL--Y 89 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEE--E
Confidence 5688999999999999865455679999999986654 48889998877778999999999998543333333333 3
Q ss_pred ecc-cccCccceEEEEechhh
Q 045047 108 IKS-FVEDQLLGFTLVPLSEV 127 (188)
Q Consensus 108 ~~~-~~~Dd~IG~a~VpL~el 127 (188)
+.+ ...+++||.+.++..+.
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 333 56899999999999874
No 96
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.49 E-value=4e-13 Score=93.42 Aligned_cols=93 Identities=29% Similarity=0.464 Sum_probs=76.3
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeeccc
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKSF 111 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~~ 111 (188)
+|.|.|+.|++|.....++..+|||.+.+.+......+|++.... .||.|||.|.|.+... ...+.++||... ..
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~i~v~~~~---~~ 76 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNT-LNPVWNETFEFEVPPPELAELEIEVYDKD---RF 76 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCC-CCCcccceEEEEecCcccCEEEEEEEecC---Cc
Confidence 478999999999999988999999999997632246889887754 4999999999999876 567888887532 23
Q ss_pred ccCccceEEEEechhhhh
Q 045047 112 VEDQLLGFTLVPLSEVLL 129 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~ 129 (188)
.++.+||.+.+||.++..
T Consensus 77 ~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred cCCceeEEEEEEHHHccc
Confidence 369999999999999973
No 97
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.48 E-value=5.7e-13 Score=91.40 Aligned_cols=101 Identities=26% Similarity=0.379 Sum_probs=78.5
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeec-CCCcceEEEEEEeeecccc
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKT-VDSSLKSEIFTVSRIKSFV 112 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~-~~~~L~~ei~~~~r~~~~~ 112 (188)
|.|.+++|++|......++.+|||.+++.+ ....+|++.. +..||.||+.|.|.+.. ....+.+++|.. ....
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~-~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~---~~~~ 74 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVK-NTLNPVWNETFEFPVLDPESDTLTVEVWDK---DRFS 74 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeC-CCCCCcccceEEEEccCCCCCEEEEEEEec---CCCC
Confidence 579999999999988899999999999965 4667788876 45899999999999987 445677777642 2344
Q ss_pred cCccceEEEEechhhhhcCCCcceeEEe
Q 045047 113 EDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 113 ~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
.+++||.+.+++.++....+....|++|
T Consensus 75 ~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6999999999999997222333356543
No 98
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4e-12 Score=117.19 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=98.3
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecC---CCcceEEEEEEe
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTV---DSSLKSEIFTVS 106 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~---~~~L~~ei~~~~ 106 (188)
....|.|+|+.|+||.-.+.=+.-|||+++.+-.+.+.+++|+|.+ |-.||+|||+|+|.|... ...|.+.||..+
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r-~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d 243 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHR-KTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD 243 (421)
T ss_pred cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeee-cCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence 4556999999999999999334589999999988777888899866 778899999999998743 346666666432
Q ss_pred eecccccCccceEEEEechhhhhcCCCcceeEEeeecC-CCCCcceEEEEEEEEeec
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTD-FLHSPAGFVQLSLRYASD 162 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d-~~~kp~G~V~Lsl~f~~~ 162 (188)
+|..|++||++.+||.++... .....|+.+.... ....-+|+|.++|.|-+.
T Consensus 244 ---rfsr~~~iGev~~~l~~~~~~-~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 244 ---RFSRHDFIGEVILPLGEVDLL-STTLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred ---CcccccEEEEEEecCcccccc-ccceeeeccccccCCcccccceEEEEEEeecC
Confidence 478999999999999999743 3345688776531 111223899999999764
No 99
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.34 E-value=2.9e-12 Score=99.46 Aligned_cols=85 Identities=18% Similarity=0.236 Sum_probs=68.3
Q ss_pred EEEEEEeecCCCCCC---CccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecc
Q 045047 34 FLKFIYIARDIHDIG---VYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKS 110 (188)
Q Consensus 34 LEV~visAkdLkdv~---~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~ 110 (188)
|.|+|++||||.+.. +++++|||++|.+.+ .++.||++. +||+|||+|.|+|+ -+.++.+.+|.+ .
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved--~~kaRTr~s----rnd~WnE~F~i~Vd-k~nEiel~VyDk----~ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED--VERARTKPS----RNDRWNEDFEIPVE-KNNEEEVIVYDK----G 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC--EEEEeccCC----CCCcccceEEEEec-CCcEEEEEEEeC----C
Confidence 689999999999999 788899999999954 468889884 99999999999995 344565555533 2
Q ss_pred cccCccceEEEEechhhhh
Q 045047 111 FVEDQLLGFTLVPLSEVLL 129 (188)
Q Consensus 111 ~~~Dd~IG~a~VpL~ell~ 129 (188)
--..-.||-.-++|+++..
T Consensus 70 ~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CCeecceeeehhhHHHHHH
Confidence 2234578999999999985
No 100
>PLN02952 phosphoinositide phospholipase C
Probab=99.27 E-value=6.1e-11 Score=113.89 Aligned_cols=119 Identities=21% Similarity=0.306 Sum_probs=92.6
Q ss_pred ceEEEEEEEeecCCC------CCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecCC-CcceEE
Q 045047 31 ASVFLKFIYIARDIH------DIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSE 101 (188)
Q Consensus 31 ~GtLEV~visAkdLk------dv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~e 101 (188)
..+|.|+|++|.+|+ ..+.|+.-|||++|.+.|-| ..+++|++++++ -||+|||+|.|.+..+. +-+.++
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEE
Confidence 578999999998873 34566777999999999865 346789998877 79999999999987654 345666
Q ss_pred EEEEeeecc-cccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEe
Q 045047 102 IFTVSRIKS-FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYA 160 (188)
Q Consensus 102 i~~~~r~~~-~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~ 160 (188)
|+. .+ ...|+++|++.+||..|. .|. ++++|... .|.+.+.+.|-++|.
T Consensus 548 V~D----~D~~~~ddfiGq~~lPv~~Lr--~Gy--R~VpL~~~--~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 548 VRE----YDMSEKDDFGGQTCLPVSELR--PGI--RSVPLHDK--KGEKLKNVRLLMRFI 597 (599)
T ss_pred EEe----cCCCCCCCeEEEEEcchhHhc--CCc--eeEeCcCC--CCCCCCCEEEEEEEE
Confidence 653 33 447999999999999997 343 68888655 567778888888874
No 101
>PLN02223 phosphoinositide phospholipase C
Probab=99.23 E-value=1.1e-10 Score=110.87 Aligned_cols=119 Identities=19% Similarity=0.327 Sum_probs=86.6
Q ss_pred cceEEEEEEEeecCCC-----CCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecCC-CcceEE
Q 045047 30 LASVFLKFIYIARDIH-----DIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSE 101 (188)
Q Consensus 30 ~~GtLEV~visAkdLk-----dv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~e 101 (188)
...+|.|+|++|.++. ....+++.||||+|.|.|-|. .+++|. +.+.|-||+|||+|.|.|..+. |-|.++
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~-v~nNg~nPvWne~F~F~i~~PELAlLrf~ 485 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTT-VKNNEWKPTWGEEFTFPLTYPDLALISFE 485 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEE-eCCCCcCceecceeEEEEEccCceEEEEE
Confidence 3578999999999873 234578899999999998663 356675 5678999999999999997665 446667
Q ss_pred EEEEeeeccc-ccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 102 IFTVSRIKSF-VEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 102 i~~~~r~~~~-~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
|+ +.+. ..|++||++.+||..+. .| -+..+|.+.+ |.+--...|=++|
T Consensus 486 V~----D~D~~~~ddfiGQ~~LPv~~Lr--~G--yR~VpL~~~~--g~~l~~~~Ll~~f 534 (537)
T PLN02223 486 VY----DYEVSTADAFCGQTCLPVSELI--EG--IRAVPLYDER--GKACSSTMLLTRF 534 (537)
T ss_pred EE----ecCCCCCCcEEEEEecchHHhc--CC--ceeEeccCCC--cCCCCCceEEEEE
Confidence 64 3453 46999999999999997 34 3666776553 3332234554444
No 102
>PLN02352 phospholipase D epsilon
Probab=99.21 E-value=1.7e-10 Score=113.21 Aligned_cols=137 Identities=16% Similarity=0.236 Sum_probs=98.9
Q ss_pred cceEEEEEEEeecCCCC------CCCccCCCceEEEEEecCCCCeE-eeecccCCCCCCccCceeEEEeecCC-CcceEE
Q 045047 30 LASVFLKFIYIARDIHD------IGVYHKQDVYATLCLTSDPENTV-TTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSE 101 (188)
Q Consensus 30 ~~GtLEV~visAkdLkd------v~~fgKqDpYavl~l~g~~~~~~-~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~e 101 (188)
..|+|++++..|+-+.. .+-++| ||||.|.+.+ .+. || ..-.||+|||.|.+.+.... +.+.+.
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~-~~y~tv~~~~---~~v~rt----~~~~~p~w~e~f~i~~ah~~~~~~~f~ 79 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNGK-ATYVTIKIGN---KKVAKT----SHEYDRVWNQTFQILCAHPLDSTITIT 79 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCCC-CceEEEEeCC---cEEecC----CCCCCCccccceeEEeeeecCCcEEEE
Confidence 78999999999984433 233455 9999999976 333 44 23459999999999998665 555544
Q ss_pred EEEEeeecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCc-c-eEEEEEEEEeecccccc----------cc
Q 045047 102 IFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSP-A-GFVQLSLRYASDELQLM----------KA 169 (188)
Q Consensus 102 i~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp-~-G~V~Lsl~f~~~~~~~~----------~~ 169 (188)
| + + +-.+||.|.||+.+|+.+...++.||++...+. +| . -.|++++.|.+...++. ..
T Consensus 80 v----k--~--~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g 149 (758)
T PLN02352 80 L----K--T--KCSILGRFHIQAHQIVTEASFINGFFPLIMENG--KPNPELKLRFMLWFRPAELEPTWCKILENGSFQG 149 (758)
T ss_pred E----e--c--CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC--CCCCCCEEEEEEEEEEhhhCcchhhcccCCCcCC
Confidence 4 2 2 578999999999999953223779999988753 43 3 48999999988655432 12
Q ss_pred CC----CcccccCcceeEe
Q 045047 170 KP----KKRKQCGSTIWKQ 184 (188)
Q Consensus 170 ~p----~~~~~~~~~~~~~ 184 (188)
-| ..|++|.||.+..
T Consensus 150 vp~~~f~~r~g~~v~lyqd 168 (758)
T PLN02352 150 LRNATFPQRSNCHVILYQD 168 (758)
T ss_pred cCCcccccCCCCEEEEEec
Confidence 22 2788899998864
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.20 E-value=1.7e-10 Score=116.45 Aligned_cols=128 Identities=19% Similarity=0.223 Sum_probs=103.4
Q ss_pred CCccceEEEEEEEeecCCCCCC--CccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEE
Q 045047 27 LLPLASVFLKFIYIARDIHDIG--VYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFT 104 (188)
Q Consensus 27 ~~~~~GtLEV~visAkdLkdv~--~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~ 104 (188)
.-.++|+|+|++-+|++|+..+ +=+..|||.++..++. ..-||++.+ .-.||+|||+|=+.+...+..|.+++|.
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r--~~gkT~v~~-nt~nPvwNEt~Yi~lns~~d~L~LslyD 507 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDR--VIGKTRVKK-NTLNPVWNETFYILLNSFTDPLNLSLYD 507 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccc--cCCccceee-ccCCccccceEEEEecccCCceeEEEEe
Confidence 3448999999999999999999 4478999999997643 233687754 5679999999999998877889999975
Q ss_pred EeeecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEeecc
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYASDE 163 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~~~ 163 (188)
. ++...|+.+|.+.++|..|....+..++-|.+... .++-|.|...++|.+..
T Consensus 508 ~---n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~ 560 (1227)
T COG5038 508 F---NSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVI 560 (1227)
T ss_pred c---cccCCcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeeccc
Confidence 3 35779999999999999999543445567777654 37899999999999854
No 104
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.15 E-value=2.2e-10 Score=91.25 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=72.1
Q ss_pred EEEEEEeecC--CCCCCCccC--CCceEEEEEecCCCCeEeeecccCCCCC--CccCceeEEEeecCC------------
Q 045047 34 FLKFIYIARD--IHDIGVYHK--QDVYATLCLTSDPENTVTTKIIYAGGSN--PVFNESRQLKVKTVD------------ 95 (188)
Q Consensus 34 LEV~visAkd--Lkdv~~fgK--qDpYavl~l~g~~~~~~~T~v~~~GG~N--P~WNe~f~f~V~~~~------------ 95 (188)
|.|.|..||| +.+..+.|+ .|||++++|.+....+++|.|+. .-.| |+||++|.|++....
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHy-rslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHY-RSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEE-ecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 7899999999 555666786 99999999987656788999977 4555 999999999988632
Q ss_pred ------------CcceEEEEEEeeecccccCccceEEEEechhhhh
Q 045047 96 ------------SSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLL 129 (188)
Q Consensus 96 ------------~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~ 129 (188)
..|.+.||..+ .+..|++||++.++|..+..
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D---~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDND---KFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred ccccCcceEecCcEEEEEEEECc---ccCCCCcceEEEEEhhhccc
Confidence 24555555321 25689999999999998873
No 105
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.13 E-value=3.7e-11 Score=112.56 Aligned_cols=108 Identities=27% Similarity=0.341 Sum_probs=91.0
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC--CCcceEEEEEEe
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV--DSSLKSEIFTVS 106 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~--~~~L~~ei~~~~ 106 (188)
.-.|.|+|-.||+|--.+.=|=.|||+.+.+-.|+ +.+++|++++ .--||+|||+|+|.+... +..|.+|||.++
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEeccc
Confidence 34588999999999999999999999999998776 5688999987 789999999999999754 457899999886
Q ss_pred eecccccCccceEEEEechhhhhcCCCcceeEEeeecC
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTD 144 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d 144 (188)
+.+.+|+.|....-++||.. .-.+.||.|-+.+
T Consensus 258 ---rTsRNDFMGslSFgisEl~K--~p~~GWyKlLsqe 290 (683)
T KOG0696|consen 258 ---RTSRNDFMGSLSFGISELQK--APVDGWYKLLSQE 290 (683)
T ss_pred ---ccccccccceecccHHHHhh--cchhhHHHHhhhh
Confidence 45689999999999999983 3455677776654
No 106
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=8e-11 Score=114.19 Aligned_cols=122 Identities=19% Similarity=0.327 Sum_probs=97.6
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEee--
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSR-- 107 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r-- 107 (188)
-...+.+||+.|.+|.-.+--||.|||+.++++- ++.||+++. |--||+|||+|.|..-++...+++.+|..+-
T Consensus 293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~k---tkrrtrti~-~~lnpvw~ekfhfechnstdrikvrvwded~dl 368 (1283)
T KOG1011|consen 293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK---TKRRTRTIH-QELNPVWNEKFHFECHNSTDRIKVRVWDEDNDL 368 (1283)
T ss_pred cceeeEEeeeecccceecccCCCCCCcEEEeecc---cchhhHhhh-hccchhhhhheeeeecCCCceeEEEEecCcccH
Confidence 3456889999999999999999999999999986 888999977 7899999999999998877778888886321
Q ss_pred ---ecc-cc--cCccceEEEEechhhhhcCCCcceeEEeeec-CCCCCcceEEEEEEEE
Q 045047 108 ---IKS-FV--EDQLLGFTLVPLSEVLLNNGKLDTEFSLSST-DFLHSPAGFVQLSLRY 159 (188)
Q Consensus 108 ---~~~-~~--~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~-d~~~kp~G~V~Lsl~f 159 (188)
.+. +. .||++|+..|-+..| .|+.+.||+|-.. |+ .--.|.|+|.+..
T Consensus 369 ksklrqkl~resddflgqtvievrtl---sgemdvwynlekrtdk-savsgairlhisv 423 (1283)
T KOG1011|consen 369 KSKLRQKLTRESDDFLGQTVIEVRTL---SGEMDVWYNLEKRTDK-SAVSGAIRLHISV 423 (1283)
T ss_pred HHHHHHHhhhcccccccceeEEEEec---ccchhhhcchhhccch-hhccceEEEEEEE
Confidence 111 11 699999999998887 5899999999543 43 2346777766655
No 107
>PLN02228 Phosphoinositide phospholipase C
Probab=99.11 E-value=1.1e-09 Score=104.65 Aligned_cols=120 Identities=14% Similarity=0.180 Sum_probs=84.3
Q ss_pred ceEEEEEEEeecCC------CCCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCcc-CceeEEEeecCC-CcceE
Q 045047 31 ASVFLKFIYIARDI------HDIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVF-NESRQLKVKTVD-SSLKS 100 (188)
Q Consensus 31 ~GtLEV~visAkdL------kdv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~W-Ne~f~f~V~~~~-~~L~~ 100 (188)
..+|.|+|++|.+| .+.+-+...||||+|.+.|-|. .+++|++.++| -||+| ||+|.|.+..+. +-+++
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~-~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQ-WFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCC-CCceECCCeEEEEEEcCceeEEEE
Confidence 45899999999986 2234567799999999998653 35789998876 59999 999999987654 44555
Q ss_pred EEEEEeeecc-cccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEE
Q 045047 101 EIFTVSRIKS-FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRY 159 (188)
Q Consensus 101 ei~~~~r~~~-~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f 159 (188)
.|+ +.+ ...|++||++.+||..|. .| -+..+|.+.+..--+...|-+.++|
T Consensus 509 ~V~----D~d~~~~d~figq~~lPv~~Lr--~G--YR~VpL~~~~G~~l~~atLfv~~~~ 560 (567)
T PLN02228 509 KVQ----DYDNDTQNDFAGQTCLPLPELK--SG--VRAVRLHDRAGKAYKNTRLLVSFAL 560 (567)
T ss_pred EEE----eCCCCCCCCEEEEEEcchhHhh--CC--eeEEEccCCCCCCCCCeEEEEEEEE
Confidence 553 334 457999999999999996 23 3455665553211122334444444
No 108
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.04 E-value=3.5e-09 Score=101.58 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=78.4
Q ss_pred ceEEEEEEEeecCC----CC--CCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecCC-CcceEE
Q 045047 31 ASVFLKFIYIARDI----HD--IGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSE 101 (188)
Q Consensus 31 ~GtLEV~visAkdL----kd--v~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~e 101 (188)
..+|.|+|+++.++ ++ .+.+...|||+.|.|.|-| ..+++|+++++++ ||+|||+|.|.+..+. +-++++
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~-nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNW-IPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCC-CcccCCeeEEEEEcCceeEEEEE
Confidence 57899999999874 23 3456678999999998765 3467899998875 9999999999987554 456666
Q ss_pred EEEEeeecc-cccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 102 IFTVSRIKS-FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 102 i~~~~r~~~-~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
|+ +.+ ...|++||++.+||..|.. | -+..+|.+.
T Consensus 530 V~----d~D~~~~ddfigq~~lPv~~Lr~--G--yR~V~L~~~ 564 (581)
T PLN02222 530 VH----EYDMSEKDDFGGQTCLPVWELSQ--G--IRAFPLHSR 564 (581)
T ss_pred EE----ECCCCCCCcEEEEEEcchhhhhC--c--cceEEccCC
Confidence 64 334 3469999999999999973 4 344566554
No 109
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.03 E-value=2.3e-09 Score=103.11 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=79.7
Q ss_pred cceEEEEEEEeecCCC------CCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecCC-CcceE
Q 045047 30 LASVFLKFIYIARDIH------DIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKS 100 (188)
Q Consensus 30 ~~GtLEV~visAkdLk------dv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ 100 (188)
...+|.|+|+++.++. +.+.|+..|||++|.|.|-|. .+++|+|.. .|-||+|||+|.|.+.-+. +-|++
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~-n~~nP~Wneef~F~l~vPELAllRf 545 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEY-DTWTPIWNKEFIFPLAVPELALLRV 545 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccC-CCCCCccCCeeEEEEEcCceeEEEE
Confidence 3578999999999863 235677799999999998663 356788755 5799999999999987654 45666
Q ss_pred EEEEEeeeccc-ccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 101 EIFTVSRIKSF-VEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 101 ei~~~~r~~~~-~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
+|+ +++. ..|++||+..+||..|.. | -+..+|.+.
T Consensus 546 ~V~----d~d~~~~ddfiGQ~~lPv~~Lr~--G--yR~V~L~~~ 581 (598)
T PLN02230 546 EVH----EHDINEKDDFGGQTCLPVSEIRQ--G--IHAVPLFNR 581 (598)
T ss_pred EEE----ECCCCCCCCEEEEEEcchHHhhC--c--cceEeccCC
Confidence 764 3443 579999999999999973 4 344566554
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.87 E-value=7.9e-09 Score=104.59 Aligned_cols=126 Identities=17% Similarity=0.254 Sum_probs=96.1
Q ss_pred CccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeec-CCCcceEEEEEEe
Q 045047 28 LPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKT-VDSSLKSEIFTVS 106 (188)
Q Consensus 28 ~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~-~~~~L~~ei~~~~ 106 (188)
-.-.|.|+|.+.+|.||+..+.=|..||||++-+++. .-++|++++ -+.||+|||.+.+.|.. ....+.+.+.+.+
T Consensus 1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k--~vyktkv~K-ktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd 1112 (1227)
T COG5038 1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEK--SVYKTKVVK-KTLNPVWNEEFTIEVLNRVKDVLTINVNDWD 1112 (1227)
T ss_pred ecccCcEEEEEeccCCCcccccCCCCCceEEEEecce--ecccccchh-ccCCCCccccceEeeeccccceEEEEEeecc
Confidence 3357999999999999999999999999999999772 367787766 68999999999999974 3345666665554
Q ss_pred eecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 107 RIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
+++ .||+||.+.++|..+.. .|.....-++.+.. ++.-.|.++....|.+
T Consensus 1113 ~~~---knd~lg~~~idL~~l~~-~~~~n~~i~ldgk~-~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1113 SGE---KNDLLGTAEIDLSKLEP-GGTTNSNIPLDGKT-FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred cCC---CccccccccccHhhcCc-CCccceeeeccCcc-eEecccEeecceecch
Confidence 433 69999999999999973 34444455555543 3455677777777765
No 111
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.75 E-value=6.5e-08 Score=94.67 Aligned_cols=103 Identities=19% Similarity=0.314 Sum_probs=79.5
Q ss_pred EEEEEEEeecCC-CC--CCCc-cCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEEeecCC-CcceEEEEEE
Q 045047 33 VFLKFIYIARDI-HD--IGVY-HKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSEIFTV 105 (188)
Q Consensus 33 tLEV~visAkdL-kd--v~~f-gKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ei~~~ 105 (188)
||.|.|+++.++ ++ ..-| .--|||+.|.|.|=|. .+++|++..+.|=||.|+|+|.|+|..+. |-++++|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~-- 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVH-- 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEE--
Confidence 899999999943 33 3334 4589999999998763 47789999999999999999999998765 44566664
Q ss_pred eeeccccc-CccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 106 SRIKSFVE-DQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 106 ~r~~~~~~-Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
+.++.+ |+++|+.++|+.+|. .| -+..+|.+.
T Consensus 695 --d~d~~~~ddF~GQ~tlP~~~L~--~G--yRhVpL~~~ 727 (746)
T KOG0169|consen 695 --DYDYIGKDDFIGQTTLPVSELR--QG--YRHVPLLSR 727 (746)
T ss_pred --ecCCCCcccccceeeccHHHhh--Cc--eeeeeecCC
Confidence 456555 999999999999997 23 344566554
No 112
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.47 E-value=8.7e-07 Score=86.61 Aligned_cols=124 Identities=21% Similarity=0.228 Sum_probs=103.0
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeeccc
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSF 111 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~ 111 (188)
-.|-|.+..||+|.....-|--||||.|.+ |..+-.||.+.- ----|-|-|.|.|.++..=..|.+=|| ++++
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~l--D~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F~~l~fYv~----D~d~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNL--DQEEVCRTATVE-KSLCPFFGEEFYFEIPRTFRYLSFYVW----DRDL 77 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEee--cchhhhhhhhhh-hhcCCccccceEEecCcceeeEEEEEe----cccc
Confidence 358899999999999999999999999999 767778888754 467799999999999865555655554 4567
Q ss_pred ccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEeecc
Q 045047 112 VEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYASDE 163 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~~~ 163 (188)
..|+.||.+.|-=.++-... ..+.||+|..-|.-..-+|+|+|+|.+.+..
T Consensus 78 ~~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred ccccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEecccc
Confidence 78999999999999997533 5668999988887667899999999998753
No 113
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=1.2e-06 Score=81.11 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=71.0
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC--C-CcceEEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV--D-SSLKSEIFT 104 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~--~-~~L~~ei~~ 104 (188)
..|.|.|.|+.||+|+..+.=+=-||||++++-.+. ..+++|.+ +++-.||+|||+|.|.|+.. . ..+.++||.
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~-~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d 374 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSV-KKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD 374 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeec-ccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence 468999999999999999998999999999998554 34555654 77899999999999998732 2 245556653
Q ss_pred EeeecccccCccceEEEEechh
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSE 126 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~e 126 (188)
. +.+...++||.+.+....
T Consensus 375 ~---d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 375 H---DTLGSNDLIGRCILGSDS 393 (421)
T ss_pred c---ccccccceeeEEEecCCC
Confidence 2 235567799987776654
No 114
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.30 E-value=2.8e-06 Score=84.59 Aligned_cols=93 Identities=14% Similarity=0.233 Sum_probs=75.7
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccC-ceeEEEeecCC-CcceEEEEEEee
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFN-ESRQLKVKTVD-SSLKSEIFTVSR 107 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WN-e~f~f~V~~~~-~~L~~ei~~~~r 107 (188)
-+|.|.|+.||-|.+.. =|--.|+++|.|-|-+ -.+++|.+..+.|-||+|| |+|.|.|..+. |-|+++| +
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V----~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVV----Y 1139 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEE----e
Confidence 46789999999999544 2335799999998764 4578899999999999999 99999998775 5577776 5
Q ss_pred eccccc-CccceEEEEechhhhh
Q 045047 108 IKSFVE-DQLLGFTLVPLSEVLL 129 (188)
Q Consensus 108 ~~~~~~-Dd~IG~a~VpL~ell~ 129 (188)
++++++ -.+||.|+.||+.+..
T Consensus 1140 eeDmfs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1140 EEDMFSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred cccccCCcceeeeeecchhhhhc
Confidence 677665 4699999999999863
No 115
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.17 E-value=9.2e-06 Score=79.03 Aligned_cols=120 Identities=16% Similarity=0.277 Sum_probs=95.3
Q ss_pred ceEEEEEEEeecCCCCCCCccC-CCceEEEEEecCCCCeEeeecccCCCCCCccCce-eEEEeecCC---CcceEEEEEE
Q 045047 31 ASVFLKFIYIARDIHDIGVYHK-QDVYATLCLTSDPENTVTTKIIYAGGSNPVFNES-RQLKVKTVD---SSLKSEIFTV 105 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgK-qDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~-f~f~V~~~~---~~L~~ei~~~ 105 (188)
.|.|-|.+..||.|.=.+--+. -|.|+.+.+++ .+++|.|.. ..-||.||.. |+|.|++.+ ..|.+.+ +
T Consensus 2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n---~t~ktdvf~-kslnp~wnsdwfkfevddadlqdeplqi~l--l 75 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN---TTFKTDVFL-KSLNPQWNSDWFKFEVDDADLQDEPLQIRL--L 75 (1169)
T ss_pred CCcceeEEEeccCCcccccccccchheeEEEecc---cceehhhhh-hhcCCcccccceEEecChhhhccCCeeEEE--e
Confidence 3788999999999998886654 79999999998 899998865 5789999976 999998653 3455444 3
Q ss_pred eeecc-cccCccceEEEEechhhhhc--------CCCcc-eeEEeeecCCCCCcceEEEEEEEEe
Q 045047 106 SRIKS-FVEDQLLGFTLVPLSEVLLN--------NGKLD-TEFSLSSTDFLHSPAGFVQLSLRYA 160 (188)
Q Consensus 106 ~r~~~-~~~Dd~IG~a~VpL~ell~~--------~G~~~-~~~~l~s~d~~~kp~G~V~Lsl~f~ 160 (188)
+.+ |..+|.||.+.|.|..|+-+ +|..- .||++-.+ -|--+|+|++.++..
T Consensus 76 --d~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt--ihgirgeinvivkvd 136 (1169)
T KOG1031|consen 76 --DHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT--IHGIRGEINVIVKVD 136 (1169)
T ss_pred --cccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee--cccccceeEEEEEEe
Confidence 344 88999999999999988752 33222 69999877 567899999998864
No 116
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.08 E-value=6.4e-07 Score=88.22 Aligned_cols=125 Identities=21% Similarity=0.273 Sum_probs=89.8
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCe--------------E--------------eeecccCCCCCCccCc
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENT--------------V--------------TTKIIYAGGSNPVFNE 85 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~--------------~--------------~T~v~~~GG~NP~WNe 85 (188)
|-|.+..||||-+.+.-|=.||||...+-...+.+ + -| -++..--||+|||
T Consensus 116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkat-svk~~TLnPkW~E 194 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKAT-SVKKKTLNPKWSE 194 (1103)
T ss_pred HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhc-ccccccCCcchhh
Confidence 56778889999999998999999998885321000 0 01 1233345999999
Q ss_pred eeEEEeecCCC-cceEEEEEEeee------------------------------cccc---cCccceEEEEechhhhhcC
Q 045047 86 SRQLKVKTVDS-SLKSEIFTVSRI------------------------------KSFV---EDQLLGFTLVPLSEVLLNN 131 (188)
Q Consensus 86 ~f~f~V~~~~~-~L~~ei~~~~r~------------------------------~~~~---~Dd~IG~a~VpL~ell~~~ 131 (188)
+|.|+|++... .+.+.||.-+-. +.-. .||++|-+.|||+|+-.
T Consensus 195 kF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~-- 272 (1103)
T KOG1328|consen 195 KFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP-- 272 (1103)
T ss_pred heeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc--
Confidence 99999987653 577788853210 0001 29999999999999973
Q ss_pred CCcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 132 GKLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 132 G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
..+++||.|-......+-+|.|+|.|.+..
T Consensus 273 ~Gld~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 273 DGLDQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred chHHHHhccCcccccccccceEEEEEEEee
Confidence 468899999665445578999999998864
No 117
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.93 E-value=8.7e-06 Score=83.46 Aligned_cols=108 Identities=20% Similarity=0.273 Sum_probs=83.2
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC--CeEeeecccCCCCCCccCceeEEE-ee--cC-CCcceEEEE
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE--NTVTTKIIYAGGSNPVFNESRQLK-VK--TV-DSSLKSEIF 103 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~--~~~~T~v~~~GG~NP~WNe~f~f~-V~--~~-~~~L~~ei~ 103 (188)
..|+|-|-|..||+|.=..==.-.||||+..+-.||+ .|++|+|.+ +-+||+|||.+..+ .+ .. .++|.+.||
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvr-kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVR-KTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccc-ccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 3689999999999995443334689999999988874 478899977 89999999999866 22 22 257877887
Q ss_pred EEeeecccccCccceEEEEechhhhhcCCCcceeEEeee
Q 045047 104 TVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSS 142 (188)
Q Consensus 104 ~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s 142 (188)
+ ...+.+.-++|.+.|||.++-- ..+...||+|..
T Consensus 1601 s---~~~~~en~~lg~v~i~L~~~~l-~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1601 S---NGGLLENVFLGGVNIPLLKVDL-LKESVGWYNLGA 1635 (1639)
T ss_pred c---ccceeeeeeeeeeecchhhcch-hhhhcceeeccc
Confidence 4 3468899999999999999852 234557998854
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.86 E-value=3.9e-05 Score=75.37 Aligned_cols=108 Identities=19% Similarity=0.288 Sum_probs=79.4
Q ss_pred cCCCceEEEEEecCCC-CeEeeecccCCCCCCccCceeEEEeecC---------------C-CcceEEEEEEeeeccccc
Q 045047 51 HKQDVYATLCLTSDPE-NTVTTKIIYAGGSNPVFNESRQLKVKTV---------------D-SSLKSEIFTVSRIKSFVE 113 (188)
Q Consensus 51 gKqDpYavl~l~g~~~-~~~~T~v~~~GG~NP~WNe~f~f~V~~~---------------~-~~L~~ei~~~~r~~~~~~ 113 (188)
+-+||||.+.+.|... ...+|++.+ -+.||.|||.|.|.+... + -++++++|... +-+..
T Consensus 149 ~~~dp~~~v~~~g~~~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~--~~~~~ 225 (800)
T KOG2059|consen 149 GQCDPFARVTLCGPSKLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDL--NLVIN 225 (800)
T ss_pred CCCCcceEEeecccchhhccccceee-eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccch--hhhhh
Confidence 4599999999987532 224677744 789999999999999644 1 26778888521 12456
Q ss_pred CccceEEEEechhhhhcCCCcceeEEeeecCCC-----CCcceEEEEEEEEeec
Q 045047 114 DQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFL-----HSPAGFVQLSLRYASD 162 (188)
Q Consensus 114 Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~-----~kp~G~V~Lsl~f~~~ 162 (188)
|+++|++.||+..+. +.-.-..||.|...+.. +.--|.++|.+.|...
T Consensus 226 ~~FlGevrv~v~~~~-~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 226 DVFLGEVRVPVDVLR-QKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred hhhceeEEeehhhhh-hccCccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 999999999999998 33455579999877632 2236889999999764
No 119
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=1.3e-05 Score=72.93 Aligned_cols=132 Identities=22% Similarity=0.172 Sum_probs=93.4
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEee-cCCCcceEEEEEEe
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVK-TVDSSLKSEIFTVS 106 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~-~~~~~L~~ei~~~~ 106 (188)
....|..+|..|++|+=+++=+.-|||+.+.+...- .++.+|++.+ ++.||+|||+....-. +.+..++.+.. ..
T Consensus 91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~~~K~~Rk-~v 168 (362)
T KOG1013|consen 91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDTHLKVLRK-VV 168 (362)
T ss_pred hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchhhhhhhhe-ee
Confidence 556789999999999999999999999999986321 3456777755 8999999999887644 33344444433 23
Q ss_pred eecc-cccCccceEEEEechhhhhcCCCcc-e--eEEee--ecCCCC-CcceEEEEEEEEeecc
Q 045047 107 RIKS-FVEDQLLGFTLVPLSEVLLNNGKLD-T--EFSLS--STDFLH-SPAGFVQLSLRYASDE 163 (188)
Q Consensus 107 r~~~-~~~Dd~IG~a~VpL~ell~~~G~~~-~--~~~l~--s~d~~~-kp~G~V~Lsl~f~~~~ 163 (188)
++++ ++....+|+..|+|..+-...++.- . .+.+. +.|.-+ .++|.|.+++.|....
T Consensus 169 cdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~ 232 (362)
T KOG1013|consen 169 CDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTT 232 (362)
T ss_pred ccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCC
Confidence 4555 6678999999999999986444322 2 22222 223223 6789999999996543
No 120
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0012 Score=65.26 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=80.2
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCC----CCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeee
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP----ENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRI 108 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~----~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~ 108 (188)
.+.|.|+.|.||+=- .-|--.||+.+.|-|.. ..++.|++ +.+.--|.+||+|.|.+...+..-.+|+.+...+
T Consensus 1126 kvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKt-KsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKD 1203 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKT-KSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKD 1203 (1283)
T ss_pred eEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccc-cCCCcCcccCceeEEEeccCCCCceEEEEEeehh
Confidence 477889999999853 35667899999998632 34666666 6678889999999999975544344555443222
Q ss_pred cc-cccCccceEEEEechhhhhcCCCcceeEEeeec
Q 045047 109 KS-FVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSST 143 (188)
Q Consensus 109 ~~-~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~ 143 (188)
-. ..+|+.||-+.++|.++. ++|+-..|++|-..
T Consensus 1204 YCFAReDRvvGl~VlqL~~va-~kGS~a~W~pLgrr 1238 (1283)
T KOG1011|consen 1204 YCFAREDRVVGLAVLQLRSVA-DKGSCACWVPLGRR 1238 (1283)
T ss_pred heeecccceeeeeeeehhhHh-hcCceeEeeecccc
Confidence 22 237999999999999998 57988899998654
No 121
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.29 E-value=0.00036 Score=70.76 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=93.3
Q ss_pred cceeeeeeeeeeeeecccCc--C----------CCCccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeee
Q 045047 5 QSVVSIFKSLLLLSLRSINL--I----------SLLPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTK 72 (188)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~ 72 (188)
|++++.||++.-.-+...+. + +.+..-...+|+++.|-+|.-.|.=|+-|||+.|.+++ ++...+
T Consensus 574 ~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk---~~~~d~ 650 (1105)
T KOG1326|consen 574 QQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK---KRTLDR 650 (1105)
T ss_pred cchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeecc---chhhhh
Confidence 67999999986644443111 1 12345667899999999999999999999999999987 443333
Q ss_pred c-ccCCCCCCccCceeEEEeecC-CCcceEEEEEEeeecc-cccCccceEEEEechhhhhc----CCCcceeEEeeec
Q 045047 73 I-IYAGGSNPVFNESRQLKVKTV-DSSLKSEIFTVSRIKS-FVEDQLLGFTLVPLSEVLLN----NGKLDTEFSLSST 143 (188)
Q Consensus 73 v-~~~GG~NP~WNe~f~f~V~~~-~~~L~~ei~~~~r~~~-~~~Dd~IG~a~VpL~ell~~----~G~~~~~~~l~s~ 143 (188)
. ..-+--||+|++-|.+...-+ ...|.++|+. .+ ...|+.||+.+|.|..=.-. .-.+.+.|.++.+
T Consensus 651 ~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd----~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~ 724 (1105)
T KOG1326|consen 651 AHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYD----HDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGA 724 (1105)
T ss_pred hhcCcCCCCcHHHHHHHhhcccchhhcceeEEEE----eecccccchhhceehhhhhcccCcCCcccCccceeeeecc
Confidence 3 345788999999998887543 3467777763 34 55799999999999865431 1133456666554
No 122
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.25 E-value=0.00012 Score=72.59 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=72.3
Q ss_pred ceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC----CCeEeeecccCCCCCCccCceeEEEeec-CCCcceEEEEEE
Q 045047 31 ASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP----ENTVTTKIIYAGGSNPVFNESRQLKVKT-VDSSLKSEIFTV 105 (188)
Q Consensus 31 ~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~----~~~~~T~v~~~GG~NP~WNe~f~f~V~~-~~~~L~~ei~~~ 105 (188)
..+|-|-|+.||||--.+-=|=.|||++|.|...- -..++|+|.. ---||+|+|+|-|.|+. +...-..-|..-
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~-rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVS-RTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhh-ccccchhhhheeeecCccccccccceEEEE
Confidence 34688889999999999999999999999996421 1356688865 57899999999999973 322111122334
Q ss_pred eeecccc-cCccceEEEEechhhh
Q 045047 106 SRIKSFV-EDQLLGFTLVPLSEVL 128 (188)
Q Consensus 106 ~r~~~~~-~Dd~IG~a~VpL~ell 128 (188)
.|+++++ .+|+-|||..-|.+|-
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred eeccceecccccchHHHHhhCCCC
Confidence 4788865 7999999988887774
No 123
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.03 E-value=0.0023 Score=52.05 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=71.2
Q ss_pred EEEEEEeecCCCC-----------CCCccC--CCceEEEEEecCC-CCeEeeecccCCCCCCccCceeEEEee-------
Q 045047 34 FLKFIYIARDIHD-----------IGVYHK--QDVYATLCLTSDP-ENTVTTKIIYAGGSNPVFNESRQLKVK------- 92 (188)
Q Consensus 34 LEV~visAkdLkd-----------v~~fgK--qDpYavl~l~g~~-~~~~~T~v~~~GG~NP~WNe~f~f~V~------- 92 (188)
|.|.++.|-||+- .+.... -++|+.+.++--| .+.++|++.- --==|+||+.+-|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVA-rSFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVA-RSFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchh-hhcCCCccceEEEecccEEEcCC
Confidence 4677888888764 222221 4579999987433 3556677643 3567999999999986
Q ss_pred -cC--------CCcceEEEEEEe---eec----ccccCccceEEEEechhhhhcCCCcceeEEe
Q 045047 93 -TV--------DSSLKSEIFTVS---RIK----SFVEDQLLGFTLVPLSEVLLNNGKLDTEFSL 140 (188)
Q Consensus 93 -~~--------~~~L~~ei~~~~---r~~----~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l 140 (188)
+. .+++.++||-.. +.+ ...+|=++|.+.||+.+||...-.+..||++
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 125677888532 221 2357999999999999999755566678875
No 124
>PLN02964 phosphatidylserine decarboxylase
Probab=96.89 E-value=0.0021 Score=63.05 Aligned_cols=105 Identities=17% Similarity=0.258 Sum_probs=75.0
Q ss_pred CCCccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCC-cceEEEEE
Q 045047 26 SLLPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDS-SLKSEIFT 104 (188)
Q Consensus 26 ~~~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~-~L~~ei~~ 104 (188)
+.+++.|+..|||++|+ .++ | |+|.++---| ++.+||.+ +..-.||+||+.-.|-|..... -..+.||.
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~~--~-~~~~~~~~~g--~~~f~t~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 117 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MKF--K-DKWLACVSFG--EQTFRTET-SDSTDKPVWNSEKKLLLEKNGPHLARISVFE 117 (644)
T ss_pred ecccccCeEEEEeehhh----hcc--C-CcEEEEEEec--ceeeeecc-ccccCCcccchhhceEeccCCcceEEEEEEe
Confidence 56889999999999999 333 4 8886544433 48899987 5578999999999999976543 23555553
Q ss_pred EeeecccccCccceEEEEechhhhhcCC--CcceeEEeeecC
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNG--KLDTEFSLSSTD 144 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G--~~~~~~~l~s~d 144 (188)
. ..+..++++|.+.++|.++..+ . ++.+.|.+-.++
T Consensus 118 ~---~~~s~n~lv~~~e~~~t~f~~k-qi~elkeaF~lfD~d 155 (644)
T PLN02964 118 T---NRLSKNTLVGYCELDLFDFVTQ-EPESACESFDLLDPS 155 (644)
T ss_pred c---CCCCHHHhhhheeecHhhccHH-HHHHHHHHHHHHCCC
Confidence 3 2477899999999999998842 2 222345555444
No 125
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.55 E-value=0.011 Score=60.21 Aligned_cols=117 Identities=19% Similarity=0.264 Sum_probs=83.1
Q ss_pred ccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC----CCeEeeecccCCCCCCccCce-eEEEee-cC-CCcceEE
Q 045047 29 PLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP----ENTVTTKIIYAGGSNPVFNES-RQLKVK-TV-DSSLKSE 101 (188)
Q Consensus 29 ~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~----~~~~~T~v~~~GG~NP~WNe~-f~f~V~-~~-~~~L~~e 101 (188)
-.++||+|+|||+.-|-|.. .--||.|.+=|-| +..+||++..+.|-||+|||. |.|.-. =+ -+.|++-
T Consensus 700 vIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRia 775 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIA 775 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeee
Confidence 36789999999999998875 3389999887766 357899999999999999986 888733 22 2457666
Q ss_pred EEEEeeecccccCccceEEEEechhhhhcCCCcceeEEeeecC--CCCCcceEEEEEEEEe
Q 045047 102 IFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTD--FLHSPAGFVQLSLRYA 160 (188)
Q Consensus 102 i~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d--~~~kp~G~V~Lsl~f~ 160 (188)
++ .+ +-++||.-.+||..+.+ |.-. ..|.+.. ...-|+=+|++.++-+
T Consensus 776 vy----eE---ggK~ig~RIlpvd~l~~--GYrh--v~LRse~Nqpl~lp~Lfv~i~~kdy 825 (1189)
T KOG1265|consen 776 VY----EE---GGKFIGQRILPVDGLNA--GYRH--VCLRSESNQPLTLPALFVYIVLKDY 825 (1189)
T ss_pred ee----cc---CCceeeeeccchhcccC--ccee--EEecCCCCCccccceeEEEEEeecc
Confidence 54 33 68999999999999973 5322 2333321 1223566777777653
No 126
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=96.48 E-value=0.016 Score=44.76 Aligned_cols=86 Identities=24% Similarity=0.299 Sum_probs=48.4
Q ss_pred CeEeeecccCCCCCCccCceeEEEeecCC--------CcceEEEEEEeeecccccCccceEEEEechhhhhcCC-Cccee
Q 045047 67 NTVTTKIIYAGGSNPVFNESRQLKVKTVD--------SSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNG-KLDTE 137 (188)
Q Consensus 67 ~~~~T~v~~~GG~NP~WNe~f~f~V~~~~--------~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G-~~~~~ 137 (188)
+.+.|++.. |.||.+|-+-+|.|...+ ..+.+||+-. . -..-..||.+.|+|.+++...| .+...
T Consensus 11 Etq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa---~-g~d~~tla~~~i~l~~ll~~~~~~i~~~ 84 (107)
T PF11618_consen 11 ETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQA---L-GSDFETLAAGQISLRPLLESNGERIHGS 84 (107)
T ss_dssp --EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-----SS-EEEEEEEEE--SHHHH--S--EEEE
T ss_pred eeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEee---c-cCCeEEEEEEEeechhhhcCCCceEEEE
Confidence 678899998 999999999999996442 3678898732 2 2347789999999999995444 44455
Q ss_pred EEeeecCCCCCcceEEEEEEEEe
Q 045047 138 FSLSSTDFLHSPAGFVQLSLRYA 160 (188)
Q Consensus 138 ~~l~s~d~~~kp~G~V~Lsl~f~ 160 (188)
-.+.+. .+..-|.|...+++.
T Consensus 85 ~~l~g~--~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 85 ATLVGV--SGEDFGTLEYWIRLR 105 (107)
T ss_dssp EEE-BS--SS-TSEEEEEEEEEE
T ss_pred EEEecc--CCCeEEEEEEEEEec
Confidence 566554 345788888887764
No 127
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.44 E-value=0.015 Score=46.24 Aligned_cols=93 Identities=20% Similarity=0.151 Sum_probs=57.5
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC---CeEeeecccCCCCCCccCceeEEEee--cC--CCcceEEEEE
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE---NTVTTKIIYAGGSNPVFNESRQLKVK--TV--DSSLKSEIFT 104 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~---~~~~T~v~~~GG~NP~WNe~f~f~V~--~~--~~~L~~ei~~ 104 (188)
..+.|.++++.++.. ......+.|+.+++=.+.+ ..+.|+. .-++.++.|||.+.|++. +. ++-|.+.||.
T Consensus 8 ~~~~i~i~~~~~~~~-~~~~~~~l~V~~~l~~g~~~l~~~~~t~~-~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 8 FNLRIKIHGITNINL-LDSEDLKLYVRVQLYHGGEPLCPPQSTKK-VPFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred CCeEEEEEeeccccc-cCCCceeEEEEEEEEECCEEccCceeccC-CcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 357788888877764 2233477777776654322 1222322 223588999999999975 32 2456667765
Q ss_pred EeeecccccCccceEEEEechhh
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEV 127 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~el 127 (188)
.....+ ..+..||.+.+||=+-
T Consensus 86 ~~~~~~-~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGS-KKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCC-CcceEEEEEeEEeEcc
Confidence 321110 2468999999999774
No 128
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.19 E-value=0.31 Score=37.49 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=72.3
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEee-cC--C-C-----cceEEE
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVK-TV--D-S-----SLKSEI 102 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~-~~--~-~-----~L~~ei 102 (188)
-.+.|+++...+++. ...-+|+....+........|.........=.|||+|.|.+. .. . . .+.+.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 357899999999888 223333333332211113456666667777899999999985 22 1 1 223333
Q ss_pred EEEeeecccccC-ccceEEEEechhhhhcC-CCcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 103 FTVSRIKSFVED-QLLGFTLVPLSEVLLNN-GKLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 103 ~~~~r~~~~~~D-d~IG~a~VpL~ell~~~-G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
+. ..-.+- ..+|++.|.|++.+... ......|++.... +..-.+++++++..
T Consensus 83 ~~----~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~---~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 83 FE----VDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCK---KSNATLSISISLSE 136 (143)
T ss_pred EE----ecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC---CCCcEEEEEEEEEE
Confidence 21 111222 59999999999999532 2334678776651 33567888888865
No 129
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.70 E-value=0.055 Score=44.62 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=58.2
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCC---CeEeeecccCCCCCCccCceeEEEeec--CC--CcceEEEEE
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPE---NTVTTKIIYAGGSNPVFNESRQLKVKT--VD--SSLKSEIFT 104 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~---~~~~T~v~~~GG~NP~WNe~f~f~V~~--~~--~~L~~ei~~ 104 (188)
..+.|+|++|.+|.= --..++.|+.++|=.+.+ ....|+. .-+..++.|||.+.|++.- .. +-|.+.||.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~-~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSE-VSGKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccc-cCCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 468899999998873 123477888876543221 1223433 2345789999999998863 32 457777775
Q ss_pred Eeeecc-------------cccCccceEEEEechhh
Q 045047 105 VSRIKS-------------FVEDQLLGFTLVPLSEV 127 (188)
Q Consensus 105 ~~r~~~-------------~~~Dd~IG~a~VpL~el 127 (188)
...... -..+..||.+.++|=+-
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred ecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 432110 11367899999998773
No 130
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.48 E-value=0.083 Score=43.22 Aligned_cols=90 Identities=21% Similarity=0.167 Sum_probs=55.5
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCC---eEeeecccCCCCCCccCceeEEEeecC----CCcceEEEEE
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPEN---TVTTKIIYAGGSNPVFNESRQLKVKTV----DSSLKSEIFT 104 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~---~~~T~v~~~GG~NP~WNe~f~f~V~~~----~~~L~~ei~~ 104 (188)
..|.|.+++|.++. ++- -.|.|+.+++=.+.+. ...|+-.. ..+|.|||.+.|+|.-. ++-|.+.||.
T Consensus 8 ~~~~v~i~~~~~~~-~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 8 SNLRIKILCATYVN-VND--IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCeEEEEEeeccCC-CCC--cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence 46889999999876 332 3578887766533211 11222222 37899999999998632 2467777775
Q ss_pred Eeeecc-cccCccceEEEEechh
Q 045047 105 VSRIKS-FVEDQLLGFTLVPLSE 126 (188)
Q Consensus 105 ~~r~~~-~~~Dd~IG~a~VpL~e 126 (188)
....+. --....||.+.++|=+
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EecccCCCCceEEEEEEEEEEEC
Confidence 321110 0123569999999977
No 131
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=94.70 E-value=0.072 Score=41.09 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=60.0
Q ss_pred EEEEeecCCCCCCCcc-CCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEee--cCC-CcceEEEEEEeeeccc
Q 045047 36 KFIYIARDIHDIGVYH-KQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVK--TVD-SSLKSEIFTVSRIKSF 111 (188)
Q Consensus 36 V~visAkdLkdv~~fg-KqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~--~~~-~~L~~ei~~~~r~~~~ 111 (188)
|||+.+|||-=-.-.| .+..|++=-|+-...-.++| .++.|-.||+|+|+|.|.|. +.. -.|-+.|.. ..
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~Ks-S~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~-----~~ 76 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKS-SAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT-----QT 76 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecCCCccccc-hhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec-----cC
Confidence 7899999987655554 47788876665332245555 46889999999999999986 222 234444432 22
Q ss_pred ccCccceEEEEechhh
Q 045047 112 VEDQLLGFTLVPLSEV 127 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~el 127 (188)
-.-+.||++.+.|..+
T Consensus 77 ~RKe~iG~~sL~l~s~ 92 (103)
T cd08684 77 PRKRTIGECSLSLRTL 92 (103)
T ss_pred CccceeeEEEeecccC
Confidence 3678899999998876
No 132
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=94.64 E-value=0.19 Score=40.98 Aligned_cols=98 Identities=17% Similarity=0.150 Sum_probs=59.9
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCC---eEeeec---ccCCCCCCccCceeEEEeecC--C--Ccce
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPEN---TVTTKI---IYAGGSNPVFNESRQLKVKTV--D--SSLK 99 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~---~~~T~v---~~~GG~NP~WNe~f~f~V~~~--~--~~L~ 99 (188)
....+.|+|.++.++.-..--.-.|-|+.++|-.+.+. ...|+. .+.--..+.|||.+.|++.-. . +-|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 34467888999888877664334778888876643211 112332 222335688999999998633 2 3566
Q ss_pred EEEEEEeeecc------cccCccceEEEEechhh
Q 045047 100 SEIFTVSRIKS------FVEDQLLGFTLVPLSEV 127 (188)
Q Consensus 100 ~ei~~~~r~~~------~~~Dd~IG~a~VpL~el 127 (188)
+.||......+ -..+..||.+.+||=+-
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 66664322110 01467899999998764
No 133
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=94.19 E-value=1.5 Score=36.28 Aligned_cols=131 Identities=18% Similarity=0.119 Sum_probs=82.1
Q ss_pred cceEEEEEEEeecCCCCCCC-c-cCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC------C----c
Q 045047 30 LASVFLKFIYIARDIHDIGV-Y-HKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD------S----S 97 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~-f-gKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~------~----~ 97 (188)
....|-|.|..+|-.-+.-- . +.++--..|.+.-. .+|++|+... .-.+|.|+|.|.|.+.... . .
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~-~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR-GQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec-CceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhhc
Confidence 45668888888874332211 1 45555555555411 2899998866 8999999999999997432 1 1
Q ss_pred --ceEEEEEEeeecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCC---CcceEEEEEEEEeeccc
Q 045047 98 --LKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLH---SPAGFVQLSLRYASDEL 164 (188)
Q Consensus 98 --L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~---kp~G~V~Lsl~f~~~~~ 164 (188)
--++|.+ ++.+..++-.++|.-.+.=..+|. .|.....+++--..... -++|.|++.+.+.+..+
T Consensus 85 ~~~pihivl-i~~d~~~~~~Lv~s~~ldWR~vL~-s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 85 ISDPIHIVL-IRTDPSGETTLVGSHFLDWRKVLC-SGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred CCCceEEEE-EEecCCCceEeeeeceehHHHHhc-cCCCccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 1234433 233333344899999999999995 55543333332222122 38999999999987543
No 134
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=94.17 E-value=0.084 Score=50.10 Aligned_cols=119 Identities=20% Similarity=0.224 Sum_probs=76.4
Q ss_pred eEEEEEEEeecCCCCCCCccCCC--ceEEEEEe--cCCCCeEeeecccCCCCCCccCceeEEEeecCC---C--------
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQD--VYATLCLT--SDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD---S-------- 96 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqD--pYavl~l~--g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~---~-------- 96 (188)
-.||+.|++.+++.=-. |+|| -|+.+.+- .|..++-+|.|++ +-..|.|+|.|++.+.... +
T Consensus 367 ~elel~ivrg~~~pvp~--gp~hld~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPG--GPMHLDQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred hHhHHHHhhcccCCCCC--CchhHHhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 45778888777654322 2433 34444433 2333444455544 7788999999999997531 1
Q ss_pred -cceEEEEEEeeecc-cc-cCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEe
Q 045047 97 -SLKSEIFTVSRIKS-FV-EDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYA 160 (188)
Q Consensus 97 -~L~~ei~~~~r~~~-~~-~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~ 160 (188)
++++||+ ++. |+ +|+|+|.+.|-|.-|- +.-++...|+|....+ --.|-+.+.++..
T Consensus 444 ~g~kfeif----hkggf~rSdkl~gt~nikle~Le-n~cei~e~~~l~DGRK--~vGGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIF----HKGGFNRSDKLTGTGNIKLEILE-NMCEICEYLPLKDGRK--AVGGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEe----eccccccccceeceeeeeehhhh-cccchhhceecccccc--ccCCeeEEEEEEe
Confidence 6788886 334 33 7999999999998875 3346667778765431 3467777777765
No 135
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=93.71 E-value=0.8 Score=37.43 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=37.1
Q ss_pred eEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeeccc------ccCccceEEEEechh
Q 045047 68 TVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSF------VEDQLLGFTLVPLSE 126 (188)
Q Consensus 68 ~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~------~~Dd~IG~a~VpL~e 126 (188)
+..|.+.... ++|.|||+|++.++.... -..+|++..++-.. -....+|.+.+||-+
T Consensus 53 s~~~sv~~~~-k~p~f~deiKi~LP~~l~-~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYH-KNPVFNDEIKIQLPADLT-PQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcC-CCCCCceeEEEecCCccC-CCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3445555555 999999999999964321 13344444343221 236789999999987
No 136
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.37 E-value=1.1 Score=34.46 Aligned_cols=89 Identities=20% Similarity=0.227 Sum_probs=55.5
Q ss_pred CccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecccccCccceEEEEechhhh
Q 045047 49 VYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 49 ~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell 128 (188)
+.|.-|+.|++.+-. +.--.+.-.--.+..||++|.|.++.+ .+|.+.|+= |+-+ .+-|...+-|.|.+
T Consensus 5 ~~~~~eV~avLklDn----~~VgqT~Wk~~s~q~WDQ~Fti~LdRs-RELEI~Vyw--rD~R----slCav~~lrLEd~~ 73 (98)
T cd08687 5 LMGCSEVSAVLKLDN----TVVGQTQWKPKSNQAWDQSFTLELERS-RELEIAVYW--RDWR----SLCAVKFLKLEDER 73 (98)
T ss_pred EecccceEEEEEEcC----eEEeeccccccccccccceeEEEeecc-cEEEEEEEE--ecch----hhhhheeeEhhhhc
Confidence 445589999999943 111223333346889999999999755 456555543 3222 34567777788854
Q ss_pred hcCCCcceeEEeeecCCCCCcceEEEEEEEEe
Q 045047 129 LNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYA 160 (188)
Q Consensus 129 ~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~ 160 (188)
.+ ..+ .-.|+|.+...++|+
T Consensus 74 ~~-------~~~-----~lepqg~l~~ev~f~ 93 (98)
T cd08687 74 HE-------VQL-----DMEPQLCLVAELTFA 93 (98)
T ss_pred cc-------cee-----ccccccEEEEEEEee
Confidence 21 111 115789999999983
No 137
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.15 E-value=0.91 Score=38.52 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=36.4
Q ss_pred CeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeecccccC----ccceEEEEechh
Q 045047 67 NTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVED----QLLGFTLVPLSE 126 (188)
Q Consensus 67 ~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~~D----d~IG~a~VpL~e 126 (188)
...+|.| ..--++|.|||++++.|+... .-.++|.+.-|+.. ..| ..+|++.+||-+
T Consensus 53 se~~S~V-~yH~~~P~W~EtiKi~lP~~~-~~~~HL~FtfrH~S-~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFV-LYHNNSPRWNETIKLPIPIDK-FRGSHLRFEFRHCS-TKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEE-EEcCCCCCCceeEEEecChhh-CCCeeEEEEEEEee-eccCCCCCceEEEEEeecc
Confidence 3455544 667899999999999997432 12334444333221 222 679999999954
No 138
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=92.91 E-value=0.7 Score=38.68 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=54.7
Q ss_pred eEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecC----CCcceEEEEEE
Q 045047 32 SVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV----DSSLKSEIFTV 105 (188)
Q Consensus 32 GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~----~~~L~~ei~~~ 105 (188)
..+.|.|+++. ..+.+--.++..|+.++|=.+. -...+|.- +--+.+|.|||-+.|+|.-. ++.|.+.||..
T Consensus 10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~-~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSP-KPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeec-cCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 35778888886 4444433446677776543221 11223333 33467899999999998633 24677777753
Q ss_pred eeec---ccc----------cCccceEEEEechh
Q 045047 106 SRIK---SFV----------EDQLLGFTLVPLSE 126 (188)
Q Consensus 106 ~r~~---~~~----------~Dd~IG~a~VpL~e 126 (188)
.... ..+ .+..||-+.++|=+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 88 KAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred ecCcccccccccccccccccccceEEEEEEEEEc
Confidence 2110 111 26777888888766
No 139
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.53 E-value=0.43 Score=38.91 Aligned_cols=73 Identities=23% Similarity=0.185 Sum_probs=47.0
Q ss_pred cCCCceEEEEEecCCCC---eEeeecccCCCCCCccCceeEEEeecC----CCcceEEEEEEeeecccccCccceEEEEe
Q 045047 51 HKQDVYATLCLTSDPEN---TVTTKIIYAGGSNPVFNESRQLKVKTV----DSSLKSEIFTVSRIKSFVEDQLLGFTLVP 123 (188)
Q Consensus 51 gKqDpYavl~l~g~~~~---~~~T~v~~~GG~NP~WNe~f~f~V~~~----~~~L~~ei~~~~r~~~~~~Dd~IG~a~Vp 123 (188)
...|.|+.+++=.+.+. ...|+ .+..+..+.|||-+.|+|... ++-|.+.||... .-.....||.+++|
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~-~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~---~~~~~~~vg~~~~~ 103 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTS-YKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS---GTGKAVPFGGTTLS 103 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEcc-ccCCCCCcccceeEEcccchhcCChhheEEEEEEEec---CCCCceEEEEEEEe
Confidence 34677777776543221 11232 344568899999999998633 356777887532 11246789999999
Q ss_pred chhh
Q 045047 124 LSEV 127 (188)
Q Consensus 124 L~el 127 (188)
|=+-
T Consensus 104 lFd~ 107 (159)
T cd08397 104 LFNK 107 (159)
T ss_pred eECC
Confidence 8763
No 140
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=92.32 E-value=0.26 Score=40.32 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=28.9
Q ss_pred eEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeeccc--cc--CccceEEEEechh
Q 045047 68 TVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSF--VE--DQLLGFTLVPLSE 126 (188)
Q Consensus 68 ~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~--~~--Dd~IG~a~VpL~e 126 (188)
...|. ....-++|.|||+|++.++.... -+.+|.+..++... .. +..+|.+.+||-+
T Consensus 60 ~~~S~-v~yh~k~P~f~deiKi~LP~~l~-~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSS-VYYHNKNPQFNDEIKIQLPPDLF-PKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE-----TT-SS-EEEEEEEEEE-CCCC-TTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEE-EEecCCCCCccEEEEEEcCchhc-ccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 34343 34456899999999999985431 12233333332221 11 2799999999988
No 141
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=91.85 E-value=1.7 Score=37.20 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=50.2
Q ss_pred CeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeeccc--ccC---ccceEEEEechh----hhhcCCCcc-e
Q 045047 67 NTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSF--VED---QLLGFTLVPLSE----VLLNNGKLD-T 136 (188)
Q Consensus 67 ~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~--~~D---d~IG~a~VpL~e----ll~~~G~~~-~ 136 (188)
...+|-| ..--++|.|||++++.|+...- -..+|.+..|+..- -.| ..+|.+.+||-. .| .+|.-. -
T Consensus 53 se~~S~V-~Yh~~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l-~dG~H~L~ 129 (196)
T cd08694 53 DEYKSVI-YYQVDKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTL-TDGEHDLI 129 (196)
T ss_pred eeEEEEE-EeecCCCCCceeEEEecChhhC-CCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEE-ccCCEEEE
Confidence 4555544 4567899999999999974321 22344443333221 124 689999999962 33 345333 2
Q ss_pred eEEeeecCCCCCcceEEEEEEEEee
Q 045047 137 EFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 137 ~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
-|..... +....|..+|+|-+..
T Consensus 130 vYK~d~~--~~~~~~~~Yl~lP~~~ 152 (196)
T cd08694 130 VYKVDAK--KKLEDAKAYLSLPSTR 152 (196)
T ss_pred EEEeccc--cccccccceeeCCcch
Confidence 4444321 1112345677766543
No 142
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=91.41 E-value=2.3 Score=34.71 Aligned_cols=86 Identities=23% Similarity=0.281 Sum_probs=57.9
Q ss_pred CCCceEEEEEecCCCCeEeeecccC-CCCCCccCceeEEEeecCCCcceEEEEEEeeecccccCccceEEEEechhhhhc
Q 045047 52 KQDVYATLCLTSDPENTVTTKIIYA-GGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLN 130 (188)
Q Consensus 52 KqDpYavl~l~g~~~~~~~T~v~~~-GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~ 130 (188)
+---|++|-+++ ++-.+|+...- ..-.=-|||.|++.|..-...+.++||-.. ...+.+|+++.|||-..-..
T Consensus 36 ~~~~~ikl~~N~--k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~----~~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 36 KTRYYIKLFFND--KEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKS----GLSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred heeEEEEEEECC--EEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEcc----CccceEEEEEEeeCCCCccc
Confidence 556788888865 34444554443 334445799999999887778999998543 37899999999999876432
Q ss_pred CCC---cceeEEeeec
Q 045047 131 NGK---LDTEFSLSST 143 (188)
Q Consensus 131 ~G~---~~~~~~l~s~ 143 (188)
.+. ...+|..++.
T Consensus 110 ~~~~~~~~~~~eFsS~ 125 (168)
T PF15625_consen 110 TSTDNVPLEEYEFSSD 125 (168)
T ss_pred ccccCCceEeEEEcCC
Confidence 222 2256655544
No 143
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=91.11 E-value=0.52 Score=45.69 Aligned_cols=86 Identities=16% Similarity=0.284 Sum_probs=57.0
Q ss_pred EEeecCCCCCCCccCCCceEEEEEec-CC--CCeEeeecccCCCCCCccCceeEEEeecC-----CCcceEEEEEEeeec
Q 045047 38 IYIARDIHDIGVYHKQDVYATLCLTS-DP--ENTVTTKIIYAGGSNPVFNESRQLKVKTV-----DSSLKSEIFTVSRIK 109 (188)
Q Consensus 38 visAkdLkdv~~fgKqDpYavl~l~g-~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~-----~~~L~~ei~~~~r~~ 109 (188)
.+.|+.|.+.++|+|.|||-.+.=.. +. +.-++|-+.+ .-.||.|-+ |++.+... .+.+.++++ ..+.
T Consensus 142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~-n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~--d~~~ 217 (529)
T KOG1327|consen 142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVK-NTLNPQWAP-FSISLQSLCSKDGNRPIQIECY--DYDS 217 (529)
T ss_pred eeeeeecCcccccccCCcceEEEEecCCCceeeccccceec-cCCCCcccc-cccchhhhcccCCCCceEEEEe--ccCC
Confidence 34589999999999999998877653 22 3345565544 678999955 34444322 234444443 3322
Q ss_pred ccccCccceEEEEechhhh
Q 045047 110 SFVEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 110 ~~~~Dd~IG~a~VpL~ell 128 (188)
+ -.+++||++..+++++.
T Consensus 218 ~-~~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 218 N-GKHDLIGKFQTTLSELQ 235 (529)
T ss_pred C-CCcCceeEecccHHHhc
Confidence 1 24699999999999996
No 144
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=90.01 E-value=1.1 Score=35.06 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=41.2
Q ss_pred CceEEEEEecCC--CC-eE-eeecccCCCCCCccCceeEEEeec--C--CCcceEEEEEEeeecccccC----ccceEEE
Q 045047 54 DVYATLCLTSDP--EN-TV-TTKIIYAGGSNPVFNESRQLKVKT--V--DSSLKSEIFTVSRIKSFVED----QLLGFTL 121 (188)
Q Consensus 54 DpYavl~l~g~~--~~-~~-~T~v~~~GG~NP~WNe~f~f~V~~--~--~~~L~~ei~~~~r~~~~~~D----d~IG~a~ 121 (188)
+.|+.++|-.+. .. .. .|+...-.-.+|.|||.+.|++.- . ++-|.+.||.... -..+ ..||.+.
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~---~~~~~~~~~~lgw~n 79 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS---KKKSKKKKVPLGWVN 79 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC---STTT--EEEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC---CCccccceeEEEEEE
Confidence 356666655332 22 22 454444334799999999999863 3 3456666664322 1123 6899999
Q ss_pred Eechhh
Q 045047 122 VPLSEV 127 (188)
Q Consensus 122 VpL~el 127 (188)
+||=+-
T Consensus 80 ~~lFd~ 85 (142)
T PF00792_consen 80 LPLFDY 85 (142)
T ss_dssp EESB-T
T ss_pred EEeECC
Confidence 999875
No 145
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=0.54 Score=43.44 Aligned_cols=86 Identities=17% Similarity=0.111 Sum_probs=62.2
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCC--CCeEeeecccCCCCCCccCceeEEEeecCC-CcceEEEEEEe
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNESRQLKVKTVD-SSLKSEIFTVS 106 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~-~~L~~ei~~~~ 106 (188)
...-|.|+++.+.+|--.+-=|--||||...+..+- .-+++|++.+ --.||+||+.|-|.+...+ +.-+++|-
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K-~t~~p~fd~~~~~~i~pgdLa~~kv~ls--- 306 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKK-KTLNPEFDEEFFYDIGPGDLAYKKVALS--- 306 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchh-ccCCccccccccccCCccchhcceEEEe---
Confidence 344588999999999999999999999999997332 2366777755 6789999999999997665 33333332
Q ss_pred eecccccCccceEEEEec
Q 045047 107 RIKSFVEDQLLGFTLVPL 124 (188)
Q Consensus 107 r~~~~~~Dd~IG~a~VpL 124 (188)
.+|+.+|....+.
T Consensus 307 -----vgd~~~G~s~d~~ 319 (362)
T KOG1013|consen 307 -----VGDYDIGKSNDSI 319 (362)
T ss_pred -----ecccCCCcCccCC
Confidence 2566666544443
No 146
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.95 E-value=2.1 Score=31.87 Aligned_cols=69 Identities=16% Similarity=0.105 Sum_probs=38.7
Q ss_pred EEEEEEeecCCCCCCCccCC-CceEEEEEecCCCC---eEeeecccCCCCCCccCceeEEEeecC----CCcceEEEEE
Q 045047 34 FLKFIYIARDIHDIGVYHKQ-DVYATLCLTSDPEN---TVTTKIIYAGGSNPVFNESRQLKVKTV----DSSLKSEIFT 104 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKq-DpYavl~l~g~~~~---~~~T~v~~~GG~NP~WNe~f~f~V~~~----~~~L~~ei~~ 104 (188)
+.+++..+.++.-.. -+.+ |.|+.+++-.+.+. ...|+ ...+...+.|||-+.|++.-. ++.|.+.||.
T Consensus 13 ~~~~~~~~~~~~l~~-~~~~~~l~v~~~l~~g~~~l~~pv~t~-~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~ 89 (100)
T smart00142 13 LVITIALIHGIPLNW-SRDYSDLYVEIQLYHGGKLLCLPVSTS-YKPFFPSVKWNEWLTFPIQISDLPREARLCITIYE 89 (100)
T ss_pred eEEEEEEeeCCCccc-ccCcceEEEEEEEEECCEEccCcEEec-ccCCCCCcccceeEEccCchhcCChhhEEEEEEEE
Confidence 445555555442211 2222 78888876543211 12233 345566799999999998633 2456667764
No 147
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=87.46 E-value=0.13 Score=52.82 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=81.4
Q ss_pred CCccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeec--CCC--------
Q 045047 27 LLPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKT--VDS-------- 96 (188)
Q Consensus 27 ~~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~--~~~-------- 96 (188)
++--+--|.++++.||.|---+.-+=-||||.+..-+ +.+.|-+. .|--||.||+++.|.-.+ ..+
T Consensus 201 ~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~---qs~~T~~v-~~tl~ptwdq~~~f~~~ei~ge~~~~~~~pp 276 (1105)
T KOG1326|consen 201 SEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCG---QSKETEVV-PGTLNPTWDQTIIFDEVEIYGEAHLVLKNPP 276 (1105)
T ss_pred chhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhccc---ccceeEee-cCcCCCCccceeeccceeecCccchhhcCCC
Confidence 3334455788999999999988888899999999988 66667664 489999999999998543 222
Q ss_pred cceEEEEEEeeecccccCccceEEEEechhhhhcCCCcc-eeEEeeecCCCCCcceEEEEEE
Q 045047 97 SLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLD-TEFSLSSTDFLHSPAGFVQLSL 157 (188)
Q Consensus 97 ~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~-~~~~l~s~d~~~kp~G~V~Lsl 157 (188)
-+.+|++.. ++.+.|++.|...+-..=.+ + -.. .||++... +..+|++.++.
T Consensus 277 i~v~e~yd~---dr~g~~ef~gr~~~~p~V~~-~--~p~lkw~p~~rg---~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 277 IRVFEVYDL---DRSGINEFKGRKKQRPYVMV-Q--CPALKWVPTMRG---AFLDGDVLIAA 329 (1105)
T ss_pred eEEEEeehh---hhhchHHhhcccccceEEEe-c--CCccceEEeecc---cccccchhHHH
Confidence 234566543 24677999998776444333 1 112 47777654 35677766554
No 148
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=84.98 E-value=2.4 Score=35.75 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=37.2
Q ss_pred CeEeeecccCCCCCCccCceeEEEeecCC---CcceEEEEEEeeec------ccccCccceEEEEechh
Q 045047 67 NTVTTKIIYAGGSNPVFNESRQLKVKTVD---SSLKSEIFTVSRIK------SFVEDQLLGFTLVPLSE 126 (188)
Q Consensus 67 ~~~~T~v~~~GG~NP~WNe~f~f~V~~~~---~~L~~ei~~~~r~~------~~~~Dd~IG~a~VpL~e 126 (188)
....|.|.... ++|.|+|++++.++... .-|.+.++-.++.. .-.....+|.+-+||-+
T Consensus 56 ~~~~s~V~yh~-k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHN-QNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcC-CCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 34556665544 99999999999998432 23444443322211 11134779999999976
No 149
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=84.77 E-value=19 Score=33.14 Aligned_cols=120 Identities=16% Similarity=0.216 Sum_probs=84.5
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCC--------CcceEEEEEE
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVD--------SSLKSEIFTV 105 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~--------~~L~~ei~~~ 105 (188)
+-|.|+.+|+.+.. -++...+..++.| +...|- -..+...|.||..+-.-++... ..+|++.+-.
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~ng---~~l~TD-pv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKFNG---ESLETD-PVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEeCC---ceeeec-CCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 45788899998887 4788999999987 656565 4568889999999988886331 3577776532
Q ss_pred eeecccccCccceEEEEechhh-hhcCC--Ccc-eeEEeeec--CCCCCcceEEEEEEEEeecc
Q 045047 106 SRIKSFVEDQLLGFTLVPLSEV-LLNNG--KLD-TEFSLSST--DFLHSPAGFVQLSLRYASDE 163 (188)
Q Consensus 106 ~r~~~~~~Dd~IG~a~VpL~el-l~~~G--~~~-~~~~l~s~--d~~~kp~G~V~Lsl~f~~~~ 163 (188)
+ ..-..-..||.+.+||.-+ +...+ ... .||+|.+- + |.+.+=+|.|+|+....+
T Consensus 75 ~--~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~-y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 75 D--GSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSK-YKKHKPELLLSLSIEDDS 135 (340)
T ss_pred c--CCCCcceeccEEEEEccccccccccccccCCCeeEccccccc-cccCCccEEEEEEEeccc
Confidence 1 1234577899999999988 22233 233 79999766 3 223333799999997654
No 150
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=81.51 E-value=3.1 Score=42.70 Aligned_cols=150 Identities=16% Similarity=0.130 Sum_probs=90.9
Q ss_pred CccceEEEEEEEeecCCCCCCCc-------------------------------cC----------CCceEEEEEecCCC
Q 045047 28 LPLASVFLKFIYIARDIHDIGVY-------------------------------HK----------QDVYATLCLTSDPE 66 (188)
Q Consensus 28 ~~~~GtLEV~visAkdLkdv~~f-------------------------------gK----------qDpYavl~l~g~~~ 66 (188)
+-..|+|+++|..|.-+.+...| ++ +++|+.+.+...
T Consensus 72 ~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~~l~~~-- 149 (887)
T KOG1329|consen 72 ELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTVVLHKA-- 149 (887)
T ss_pred eeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchheeeechh--
Confidence 33789999999999887732111 11 589999988641
Q ss_pred CeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEeeeccccc-CccceEEEEechhhhhcCCCcceeEEeeecCC
Q 045047 67 NTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSRIKSFVE-DQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDF 145 (188)
Q Consensus 67 ~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~~-Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~ 145 (188)
.-.+|....+-=.+|.|++.|........+.+. ......+..+ -+.+|.+.+|...++. .-....+|++-..|.
T Consensus 150 ~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~----~~~~~~~~~G~s~~w~~v~~s~~~~~~-~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 150 RYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVI----FRVKGARVPGWSKRWGRVKISFLQYCS-GHRIGGWFPILDNDG 224 (887)
T ss_pred hhhchhhhhcccccchhhhhccccccccccEEE----EeecCCccccceeEEEEeccchhhhhc-cccccceeeeeccCC
Confidence 223466666666899999998665544433332 2223445556 7889999999999993 235557888877664
Q ss_pred CCCcceE-EEEEEEEeeccc---------------cccccCCCcccccCcceeEe
Q 045047 146 LHSPAGF-VQLSLRYASDEL---------------QLMKAKPKKRKQCGSTIWKQ 184 (188)
Q Consensus 146 ~~kp~G~-V~Lsl~f~~~~~---------------~~~~~~p~~~~~~~~~~~~~ 184 (188)
.-...|+ +.+.+.|.+... ..+.+.-+-++.|++|.|..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd 279 (887)
T KOG1329|consen 225 KPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQD 279 (887)
T ss_pred ccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeec
Confidence 2222333 333344433221 11222223566699998863
No 151
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=81.48 E-value=3.1 Score=34.91 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=36.8
Q ss_pred eEeeecccCCCCCCccCceeEEEeecCC---CcceEEEEEEeeeccc---ccCccceEEEEechh
Q 045047 68 TVTTKIIYAGGSNPVFNESRQLKVKTVD---SSLKSEIFTVSRIKSF---VEDQLLGFTLVPLSE 126 (188)
Q Consensus 68 ~~~T~v~~~GG~NP~WNe~f~f~V~~~~---~~L~~ei~~~~r~~~~---~~Dd~IG~a~VpL~e 126 (188)
...|.| -..-++|.|+|++++.++... .-|.++++-.++.+.- -....+|++.+||-+
T Consensus 55 ~~~S~V-~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 55 EAYTAV-TYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eEEEEE-EEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 444554 346699999999999998442 2455555433322211 124679999999975
No 152
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=76.94 E-value=3.5 Score=38.43 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=72.6
Q ss_pred cceEEEEEEEeecCCCCCCCc--cCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEee
Q 045047 30 LASVFLKFIYIARDIHDIGVY--HKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSR 107 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~f--gKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r 107 (188)
..|+|-|+++..|+|+-..-- -.-|-|||+.+ |.+.+.||.| +-+|.-=.|.|+|+++|.... .+.+-++-+.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--drqh~aRt~v-rs~~~~f~w~e~F~~Dvv~~~-vl~~lvySW~- 123 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--DRQHPARTRV-RSSGPGFAWAEDFKHDVVNIE-VLHYLVYSWP- 123 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeee--cccCcccccc-ccCCCCccchhhceeecccce-eeeEEEeecC-
Confidence 578999999999999876531 12588999999 6667777755 779999999999999986432 2333232111
Q ss_pred ecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEee
Q 045047 108 IKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYAS 161 (188)
Q Consensus 108 ~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~ 161 (188)
.-...++-=...+.+.-++ ..+.++.+-+ +-.|+|.+.+.+.|+.
T Consensus 124 --pq~RHKLC~~g~l~~~~v~--rqspd~~~Al-----~lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 124 --PQRRHKLCHLGLLEAFVVD--RQSPDRVVAL-----YLEPRGQPPLRLPLAD 168 (442)
T ss_pred --chhhccccccchhhhhhhh--hcCCcceeee-----ecccCCCCceecccCC
Confidence 1112222111133333333 2334444443 2367888888888753
No 153
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=76.93 E-value=2.9 Score=30.82 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=32.8
Q ss_pred EEEEEEeeecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEE-EEEEE
Q 045047 100 SEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQ-LSLRY 159 (188)
Q Consensus 100 ~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~-Lsl~f 159 (188)
+-|||.+ +++-++++.||-.++| |+....+..|+.||.++ +-|++
T Consensus 8 V~IWMl~------g~kRvAYaRIPa~~il---------yS~~~~~~~G~~CGk~qt~flk~ 53 (76)
T PF08150_consen 8 VFIWMLS------GNKRVAYARIPAHDIL---------YSEVGEEERGKFCGKIQTLFLKY 53 (76)
T ss_pred EEEEEEe------CCeEEEEEEechHHEE---------ecCCChHHcCcccCeeEEEEEEC
Confidence 5688875 7888999999999999 45443445678899875 33443
No 154
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=76.73 E-value=21 Score=36.33 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=87.0
Q ss_pred CccceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEEEEEee
Q 045047 28 LPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEIFTVSR 107 (188)
Q Consensus 28 ~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei~~~~r 107 (188)
-...-.|||.|..-.+||.+.. .-=+||...+-| + +-.++..-...|.|...=-|+-..+--..+++++..+.
T Consensus 337 v~la~smevvvmevqglksvap--nrivyctmeveg---e--klqtdqaeaskp~wgtqgdfstthplpvvkvklftest 409 (1218)
T KOG3543|consen 337 VSLALSMEVVVMEVQGLKSVAP--NRIVYCTMEVEG---E--KLQTDQAEASKPKWGTQGDFSTTHPLPVVKVKLFTEST 409 (1218)
T ss_pred eeEEeeeeEEEeeeccccccCC--CeeEEEEEEecc---c--ccccchhhhcCCCCCcCCCcccCCCCceeEEEEEeecc
Confidence 3355679999999999999863 344899999966 3 35577888899999988777776665567888876543
Q ss_pred ecccccCccceEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEEEeecccccc
Q 045047 108 IKSFVEDQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLRYASDELQLM 167 (188)
Q Consensus 108 ~~~~~~Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~~~~~~~ 167 (188)
.--.++|+-+|.+.+.-.. +..+-+.||..+-+.. ++--.+++.|...-..|..|
T Consensus 410 gvlaledkelgrvil~ptp---ns~ks~ewh~mtvpkn--sqdqdlkiklavrmdkp~nm 464 (1218)
T KOG3543|consen 410 GVLALEDKELGRVILQPTP---NSAKSPEWHTMTVPKN--SQDQDLKIKLAVRMDKPPNM 464 (1218)
T ss_pred eeEEeechhhCeEEEecCC---CCcCCccceeeecCCC--CcCccceEEEEEeccCCCcc
Confidence 2225699999999875443 2335667887765532 44445555555554444433
No 155
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=75.40 E-value=4.8 Score=37.60 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=32.9
Q ss_pred cceEEEEechhhhhcCC-CcceeEEeeecCCCCCcceEEEEEEEEeec
Q 045047 116 LLGFTLVPLSEVLLNNG-KLDTEFSLSSTDFLHSPAGFVQLSLRYASD 162 (188)
Q Consensus 116 ~IG~a~VpL~ell~~~G-~~~~~~~l~s~d~~~kp~G~V~Lsl~f~~~ 162 (188)
++|++.||+..++. .| ..+.||++..........|.+ |.++|...
T Consensus 1 ~~G~v~i~~~~~~~-~~~~~e~w~~i~~~~~~~~~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILD-RGLDKETWLPIFDVDNKSVGEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhcc-CCCCceeeeccccCCCCCcCcceE-EEEEeeec
Confidence 58999999999884 55 455899998875444456677 67777654
No 156
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=67.34 E-value=12 Score=28.44 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=35.4
Q ss_pred ccCccceEEEEechhhhhc------C--C-----CcceeEEeeecCCCCCcceEEEEEEEEe
Q 045047 112 VEDQLLGFTLVPLSEVLLN------N--G-----KLDTEFSLSSTDFLHSPAGFVQLSLRYA 160 (188)
Q Consensus 112 ~~Dd~IG~a~VpL~ell~~------~--G-----~~~~~~~l~s~d~~~kp~G~V~Lsl~f~ 160 (188)
-..++||++.|+|.+.+.+ + + .....|+|... .+.+.|+|.|.+++.
T Consensus 45 ~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~--~~~~~G~I~l~iRLs 104 (112)
T PF14924_consen 45 PPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDE--NGNPVGEISLYIRLS 104 (112)
T ss_pred CccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecC--CCceeeeEEEEEEEe
Confidence 3678999999999999851 1 1 22248899875 357899999999875
No 157
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.41 E-value=10 Score=35.83 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=70.6
Q ss_pred ccceEEEEEEEeecCCCCCCCc-cCCCceEEEEEecCC--CCeEeeecccCCCCCCccCce-eEEEeecCCCcceEEEEE
Q 045047 29 PLASVFLKFIYIARDIHDIGVY-HKQDVYATLCLTSDP--ENTVTTKIIYAGGSNPVFNES-RQLKVKTVDSSLKSEIFT 104 (188)
Q Consensus 29 ~~~GtLEV~visAkdLkdv~~f-gKqDpYavl~l~g~~--~~~~~T~v~~~GG~NP~WNe~-f~f~V~~~~~~L~~ei~~ 104 (188)
+..|.|||.+|.||+|--.-=- .=.+||++|.+=+.. .-+.+|+.++. +.+.|++. +.|.-......|...+|=
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k--T~~plyqq~l~f~~sp~~k~Lq~tv~g 343 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK--TLDPLYQQQLSFDQSPPGKYLQGTVWG 343 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc--cCchhhhhhhhhccCCCccEEEEEEec
Confidence 3689999999999999543211 147999999986543 34556777663 34555543 556555555567776662
Q ss_pred EeeecccccCccceEEEEechhhhhcCCC-c-ceeEEeeec
Q 045047 105 VSRIKSFVEDQLLGFTLVPLSEVLLNNGK-L-DTEFSLSST 143 (188)
Q Consensus 105 ~~r~~~~~~Dd~IG~a~VpL~ell~~~G~-~-~~~~~l~s~ 143 (188)
++ -+.-.+-+.|-+.|-|.||- -+. . ..||++-..
T Consensus 344 -dy-gRmd~k~fmg~aqi~l~eL~--ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 344 -DY-GRMDHKSFMGVAQIMLDELN--LSSSPVIGWYKLFGS 380 (405)
T ss_pred -cc-cccchHHHhhHHHHHhhhhc--cccccceeeeeccCC
Confidence 11 12235888999999999984 333 2 268887544
No 158
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=54.58 E-value=20 Score=34.99 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=56.2
Q ss_pred CCCCCCccCCCceEEEEEecCCCC----------------eEeeecccCCCCCCccCceeEEEee-cCCCcceEEEEEEe
Q 045047 44 IHDIGVYHKQDVYATLCLTSDPEN----------------TVTTKIIYAGGSNPVFNESRQLKVK-TVDSSLKSEIFTVS 106 (188)
Q Consensus 44 Lkdv~~fgKqDpYavl~l~g~~~~----------------~~~T~v~~~GG~NP~WNe~f~f~V~-~~~~~L~~ei~~~~ 106 (188)
+.+.++++++|+-|.+.....++. .-+|-+++ +=.||.|-++|.+.-. +.-..+++++.+.+
T Consensus 2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~-~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~ 80 (529)
T KOG1327|consen 2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIR-NVLNPFFTKKFLLQYRFEKVQLLRFEVYDID 80 (529)
T ss_pred ccccccccccCceeeeeccCCCccccccccccccccccccccceeeee-ccCCccceeeechhheeeeeeeEEEEEeecC
Confidence 566788999999998887422211 11343333 5678999877665543 33356777776644
Q ss_pred ee-cccccCccceEEEEechhhhh
Q 045047 107 RI-KSFVEDQLLGFTLVPLSEVLL 129 (188)
Q Consensus 107 r~-~~~~~Dd~IG~a~VpL~ell~ 129 (188)
.- .++..++++|++.--|+++..
T Consensus 81 ~~~~~l~~~dflg~~~c~l~~ivs 104 (529)
T KOG1327|consen 81 SRTPDLSSADFLGTAECTLSQIVS 104 (529)
T ss_pred CccCCcchhcccceeeeehhhhhh
Confidence 32 236689999999999988875
No 159
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=41.65 E-value=1.5e+02 Score=28.28 Aligned_cols=94 Identities=15% Similarity=0.250 Sum_probs=58.1
Q ss_pred CceEEEEEecCCCCeEeeecccCCCCCC-ccCceeEEEeecCCCcceEEEEEEeeecccccCccceEEEEechhhhhcCC
Q 045047 54 DVYATLCLTSDPENTVTTKIIYAGGSNP-VFNESRQLKVKTVDSSLKSEIFTVSRIKSFVEDQLLGFTLVPLSEVLLNNG 132 (188)
Q Consensus 54 DpYavl~l~g~~~~~~~T~v~~~GG~NP-~WNe~f~f~V~~~~~~L~~ei~~~~r~~~~~~Dd~IG~a~VpL~ell~~~G 132 (188)
.-|+.++.+. ..++|..+.-+-++= .=.+.+...|.+.+.+|++.++ -..+..-..||++.+.+..=+. .+
T Consensus 75 hiyIef~~Gr---~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lf----KKkLvkk~hIgdI~InIn~dII-dk 146 (508)
T PTZ00447 75 HIYIIFSTDK---YDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLF----TTKLTKKVHIGQIKIDINASVI-SK 146 (508)
T ss_pred eEEEEEEcCc---eEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEE----eccccceeEEEEEEecccHHHH-hc
Confidence 3566666643 455553333322222 2334455555666777877765 3457788899999999987664 46
Q ss_pred Ccc--eeEEeeecCCCCCcceEEEEEEE
Q 045047 133 KLD--TEFSLSSTDFLHSPAGFVQLSLR 158 (188)
Q Consensus 133 ~~~--~~~~l~s~d~~~kp~G~V~Lsl~ 158 (188)
..+ +||.+... |+-.+-|+||+.
T Consensus 147 ~FPKnkWy~c~kD---Gq~~cRIqLSFh 171 (508)
T PTZ00447 147 SFPKNEWFVCFKD---GQEICKVQMSFY 171 (508)
T ss_pred cCCccceEEEecC---CceeeeEEEEeh
Confidence 777 69998543 355667777654
No 160
>PRK10301 hypothetical protein; Provisional
Probab=40.64 E-value=43 Score=26.17 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=30.7
Q ss_pred eEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEE
Q 045047 118 GFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLR 158 (188)
Q Consensus 118 G~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~ 158 (188)
-...+||.+-| .+|.-...|++.+.| .|.-.|.+.++++
T Consensus 86 ~~~~v~l~~~L-~~G~YtV~Wrvvs~D-GH~~~G~~~F~V~ 124 (124)
T PRK10301 86 KQLIVPLADSL-KPGTYTVDWHVVSVD-GHKTKGHYTFSVK 124 (124)
T ss_pred cEEEEECCCCC-CCccEEEEEEEEecC-CCccCCeEEEEEC
Confidence 35789998755 478777888999998 5788999988763
No 161
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=39.63 E-value=91 Score=25.13 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=31.2
Q ss_pred EEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEE
Q 045047 119 FTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLR 158 (188)
Q Consensus 119 ~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~ 158 (188)
...||+..=| ..|.-...|++.+.| .|.-.|.+.++++
T Consensus 88 ~l~v~l~~~L-~aG~Y~v~WrvvS~D-GH~v~G~~sFsV~ 125 (127)
T COG2372 88 QLEVPLPQPL-KAGVYTVDWRVVSSD-GHVVKGSISFSVG 125 (127)
T ss_pred EEEecCcccC-CCCcEEEEEEEEecC-CcEeccEEEEEec
Confidence 3789999888 578777889999998 5788999988864
No 162
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=35.64 E-value=2.4e+02 Score=22.78 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=50.0
Q ss_pred EEEeecCCCCCCCccCCCceEEEEEecCC-------CC-eEeeecccCC----CCCCccCceeEEEeecCCC----cceE
Q 045047 37 FIYIARDIHDIGVYHKQDVYATLCLTSDP-------EN-TVTTKIIYAG----GSNPVFNESRQLKVKTVDS----SLKS 100 (188)
Q Consensus 37 ~visAkdLkdv~~fgKqDpYavl~l~g~~-------~~-~~~T~v~~~G----G~NP~WNe~f~f~V~~~~~----~L~~ 100 (188)
.|.+|.+. .-.+-||+-.+...+ .. .-.|++++.. +..=.||..|-+....... .|-+
T Consensus 7 ~I~~a~~f------~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGF------EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECC------CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 46677754 444567777665321 22 3457776533 4556799998888764332 3455
Q ss_pred EEEEEeeecc-cccCccceEEEEechhh
Q 045047 101 EIFTVSRIKS-FVEDQLLGFTLVPLSEV 127 (188)
Q Consensus 101 ei~~~~r~~~-~~~Dd~IG~a~VpL~el 127 (188)
+|| ..| .-.+++.|.+.+.|.--
T Consensus 81 ~V~----~~D~~gr~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 81 QVY----SLDSWGRDRVEGYGFCHLPTQ 104 (168)
T ss_pred EEE----EEcccCCeEEeEEeEEEeCCC
Confidence 554 345 45699999998888543
No 163
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=34.99 E-value=31 Score=36.09 Aligned_cols=104 Identities=14% Similarity=0.026 Sum_probs=62.2
Q ss_pred eecccCcCCC--CccceEEEEEEEeecCCCCCCCccCCCceEEEEEe--cCCCCeEeeecccCCCCCCccCceeEEEeec
Q 045047 18 SLRSINLISL--LPLASVFLKFIYIARDIHDIGVYHKQDVYATLCLT--SDPENTVTTKIIYAGGSNPVFNESRQLKVKT 93 (188)
Q Consensus 18 ~~~~~~~~~~--~~~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~--g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~ 93 (188)
.....+.+++ -..+|+|.|.+++|..|++.. .-||..... |-.-.+.+|+++++ -.-|-||+.+...+..
T Consensus 743 i~~t~NddD~eSpl~ygflh~~vhsat~lkqs~-----~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~ 816 (1112)
T KOG4269|consen 743 IPATYNDDDDESPLLYGFLHVIVHSATGLKQSR-----NLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIE 816 (1112)
T ss_pred cccccccccccCcccccceeeeecccccccccc-----ceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhh
Confidence 3445555543 238999999999999999854 235544432 11124567888764 5679999999999875
Q ss_pred CCCcceEEEEEEe------ee-cccccCccceEEEEechhhh
Q 045047 94 VDSSLKSEIFTVS------RI-KSFVEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 94 ~~~~L~~ei~~~~------r~-~~~~~Dd~IG~a~VpL~ell 128 (188)
.-+ ++++-..++ ++ ...-.|..-|.+.+.|.-..
T Consensus 817 sqS-~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~ 857 (1112)
T KOG4269|consen 817 SQS-SRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQP 857 (1112)
T ss_pred ccc-cchhhhcccchHHHhhhccchhhcccccccccccCccc
Confidence 432 111111111 11 11335677777777766544
No 164
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=34.09 E-value=6.2 Score=39.89 Aligned_cols=85 Identities=15% Similarity=0.248 Sum_probs=58.5
Q ss_pred CCccceEEEEEEEeecCCCC----CCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEeecCCCcceEEE
Q 045047 27 LLPLASVFLKFIYIARDIHD----IGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVKTVDSSLKSEI 102 (188)
Q Consensus 27 ~~~~~GtLEV~visAkdLkd----v~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~~~~~~L~~ei 102 (188)
.+++.|..-.++|+|.++.+ +...=+|+++|+.+++- +.+||+.- +--.+|.|||.. |.+.+ .
T Consensus 275 ~dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~---~~frt~~~-~~~e~piyNe~~-~E~~~----F---- 341 (975)
T KOG2419|consen 275 ADDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGE---QTFRTEIS-DDTEKPIYNEDE-REDSD----F---- 341 (975)
T ss_pred cchhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecch---hhhhhhhh-cccccccccccc-ccccc----c----
Confidence 35577888888999998844 44456899999998865 77888774 467899999984 33211 1
Q ss_pred EEEeeecccccCccceEEEEechhhh
Q 045047 103 FTVSRIKSFVEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 103 ~~~~r~~~~~~Dd~IG~a~VpL~ell 128 (188)
...++++.+++|.....|.+-.
T Consensus 342 ----qsn~~l~~kiv~~~~~~lndS~ 363 (975)
T KOG2419|consen 342 ----QSNRYLGNKIVGYCELDLNDSY 363 (975)
T ss_pred ----hhhHHHhhhccccccccccchh
Confidence 1124556777777777776633
No 165
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=33.23 E-value=62 Score=23.74 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=28.2
Q ss_pred eEEEEechhhhhcCCCcceeEEeeecCCCCCcceEEEEEEE
Q 045047 118 GFTLVPLSEVLLNNGKLDTEFSLSSTDFLHSPAGFVQLSLR 158 (188)
Q Consensus 118 G~a~VpL~ell~~~G~~~~~~~l~s~d~~~kp~G~V~Lsl~ 158 (188)
-+..++|..-| ..|.-...|.+.+.| .|.-.|.+.++++
T Consensus 59 ~~~~~~l~~~l-~~G~YtV~wrvvs~D-GH~~~G~~~F~V~ 97 (97)
T PF04234_consen 59 KTLTVPLPPPL-PPGTYTVSWRVVSAD-GHPVSGSFSFTVK 97 (97)
T ss_dssp TEEEEEESS----SEEEEEEEEEEETT-SCEEEEEEEEEE-
T ss_pred eEEEEECCCCC-CCceEEEEEEEEecC-CCCcCCEEEEEEC
Confidence 47788888855 367777788888888 4788899988764
No 166
>PF05660 DUF807: Coxiella burnetii protein of unknown function (DUF807); InterPro: IPR008525 This family consists of several proteins of unknown function from Coxiella burnetii (the causative agent of a zoonotic disease called Q fever).
Probab=30.75 E-value=73 Score=25.93 Aligned_cols=48 Identities=8% Similarity=0.203 Sum_probs=34.8
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEee
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVK 92 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~ 92 (188)
+-|.-.|++.|||+++++. -+-+-+++-.+-.++++.++.+ .++|+-.
T Consensus 38 aTGeytItfls~r~vqetQ-----p~~vhi~v~d~~n~~fc~r~~K----------~v~Fty~ 85 (142)
T PF05660_consen 38 ATGEYTITFLSARNVQETQ-----PAVVHISVMDDANETFCPRVTK----------AVKFTYE 85 (142)
T ss_pred ccCceEEEEEeccchhhcC-----CceEEEEEEeccccccccccee----------eeEEEEC
Confidence 7788889999999999974 4555666655555677766644 5677764
No 167
>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]
Probab=29.73 E-value=43 Score=33.06 Aligned_cols=59 Identities=10% Similarity=-0.076 Sum_probs=44.0
Q ss_pred cceEEEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCccCceeEEEee
Q 045047 30 LASVFLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPVFNESRQLKVK 92 (188)
Q Consensus 30 ~~GtLEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~WNe~f~f~V~ 92 (188)
..+...+....+-.+...+.=+=-|||..+...+ ..+++-+..+|++|.||+-|.|.-.
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~----cal~reillQGrmyis~~~icF~s~ 153 (590)
T KOG1032|consen 95 KGYIGSSALLAGVNLASEFLNGVPDPEILLTDYS----CALQREILLQGRMYISEEHICFNSN 153 (590)
T ss_pred ccccchhhhhcchhhhhhhhhcCCCcceeeeecc----hhhccccccccccccccceeeeccc
Confidence 3444666666666666666444568999999876 3457788999999999999999864
No 168
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=27.49 E-value=2.3e+02 Score=23.27 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=46.3
Q ss_pred EEEEEEEeecCCCCCCCccCCCceEEEEEecCC----CCeEeeeccc-CCCCCCccCceeEEEee--c--CCCcceEEEE
Q 045047 33 VFLKFIYIARDIHDIGVYHKQDVYATLCLTSDP----ENTVTTKIIY-AGGSNPVFNESRQLKVK--T--VDSSLKSEIF 103 (188)
Q Consensus 33 tLEV~visAkdLkdv~~fgKqDpYavl~l~g~~----~~~~~T~v~~-~GG~NP~WNe~f~f~V~--~--~~~~L~~ei~ 103 (188)
-|.|.|-+.- |+|.--| .|||+.|++-... ...|-|++.. ..+.-=.||.+..+..+ . .++.+-+|+.
T Consensus 14 ~l~v~Iekig-lkda~~~--~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~k 90 (147)
T PF14186_consen 14 YLSVFIEKIG-LKDASQY--IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFK 90 (147)
T ss_dssp EEEEEEEEEE--TTGGG---EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEE
T ss_pred eEEEEEEEEE-ECChHHc--cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEE
Confidence 4666666665 9998877 6899999997322 3466788873 34555556766665543 2 2344555553
Q ss_pred EEeeecccccCccceEEEEechhhh
Q 045047 104 TVSRIKSFVEDQLLGFTLVPLSEVL 128 (188)
Q Consensus 104 ~~~r~~~~~~Dd~IG~a~VpL~ell 128 (188)
-..-.++ .=-..+.+.++++++-
T Consensus 91 H~K~kk~--k~S~kcw~fme~dei~ 113 (147)
T PF14186_consen 91 HYKPKKK--KTSTKCWAFMELDEIK 113 (147)
T ss_dssp EEETTTT--CEEEEEEEEEEGGG--
T ss_pred eeeccce--eeeeeEEEEEEhhhcc
Confidence 2111111 1122588899998885
No 169
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=26.20 E-value=40 Score=31.55 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=29.3
Q ss_pred CCCccCCCceEEEEEecCCCCeEeeecccCCCCCC----ccCcee
Q 045047 47 IGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNP----VFNESR 87 (188)
Q Consensus 47 v~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP----~WNe~f 87 (188)
.|+|+|+|.=+.+.+-| .-+..-++-+|.++. -|.|+|
T Consensus 56 yN~Fsk~DiRv~v~ipg---~~~~~~vd~~g~~~~~~~~~W~Etf 97 (395)
T PF09295_consen 56 YNAFSKVDIRVEVHIPG---SVQSYVVDCNGEKHQVTDELWEETF 97 (395)
T ss_pred EeccccceEEEEEEcCC---ceEEEEEcCCCccccccHHHHHHHH
Confidence 57899999999999976 555566788888864 377775
No 170
>PF11875 DUF3395: Domain of unknown function (DUF3395); InterPro: IPR024586 Chaperone DnaJ was originally characterised from Escherichia coli as a 41 kDa heat shock protein. DnaJ has a modular structure consisting of a J-domain, a proximal G/F-domain, and a distal zinc finger domain, followed by less conserved C-terminal sequences. Since then, a large number of DnaJ-related proteins containing a J-domain have been characterised from a variety of different organisms. In the genome of Arabidopsis thaliana a total of 89 J-domain proteins have been identified []. This entry represents a C-terminal domain found in some eukaryotic DnaJ-like proteins, including member 11 from the subfamily C1 and protein DnaJ 13 from Arabidopsis. This domain is typically between 147 to 176 amino acids in length.
Probab=24.31 E-value=35 Score=27.66 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=22.5
Q ss_pred ceEEEEechhhhhcCCCcce--eEEeeecCCCCCcc---e---EEEEEEEEeecc
Q 045047 117 LGFTLVPLSEVLLNNGKLDT--EFSLSSTDFLHSPA---G---FVQLSLRYASDE 163 (188)
Q Consensus 117 IG~a~VpL~ell~~~G~~~~--~~~l~s~d~~~kp~---G---~V~Lsl~f~~~~ 163 (188)
+=.|+|||+-++ .++.+.- .++-+.=-.|..|| | .+++.|+|.+..
T Consensus 84 ~iDVTipLq~lV-~dS~L~l~~~~sKs~L~GF~DP~p~~ge~K~L~V~Y~f~g~~ 137 (151)
T PF11875_consen 84 VIDVTIPLQALV-KDSQLILPEGVSKSGLPGFYDPCPFLGEPKQLRVRYRFRGKL 137 (151)
T ss_pred EEEEhhhhhhEe-ecCEEEEcCCCchhhCCCCCCCccccCCccEEEEEEEECCEE
Confidence 334566666665 3443331 12222222234444 3 388888887644
No 171
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=22.44 E-value=58 Score=28.05 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=20.3
Q ss_pred CCceEEEEEecCCCCeEeeecccCCCCCCc
Q 045047 53 QDVYATLCLTSDPENTVTTKIIYAGGSNPV 82 (188)
Q Consensus 53 qDpYavl~l~g~~~~~~~T~v~~~GG~NP~ 82 (188)
-|+||.+.++- .+ |-.++.||.+|.
T Consensus 108 kd~~atL~~s~----~q-t~~Ck~~g~DPm 132 (210)
T KOG3374|consen 108 KDNKATLLFSD----EQ-TLRCKEGGKDPM 132 (210)
T ss_pred cCCceeEEeec----cc-cchhhcCCCCCC
Confidence 58999999974 22 778899999996
No 172
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=22.25 E-value=2.2e+02 Score=23.21 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=33.4
Q ss_pred EEEEEEeecCCCCCCCccCCCceEEEEEecCCCCeEeeecccCCCCCCc----cCceeEEEee
Q 045047 34 FLKFIYIARDIHDIGVYHKQDVYATLCLTSDPENTVTTKIIYAGGSNPV----FNESRQLKVK 92 (188)
Q Consensus 34 LEV~visAkdLkdv~~fgKqDpYavl~l~g~~~~~~~T~v~~~GG~NP~----WNe~f~f~V~ 92 (188)
|+|.-+++ ..+.+=.|.|+|..+++=| +-++|+-. .|+ +||+|+|.=.
T Consensus 4 L~i~aVTC---PGv~L~~~~~vyL~v~~lg---~~~~T~~~-----ppvFPllfhek~~FeK~ 55 (140)
T PF14909_consen 4 LEIHAVTC---PGVWLCDKGDVYLSVCILG---QYKRTRCL-----PPVFPLLFHEKFRFEKV 55 (140)
T ss_pred EEEEEEec---CCeEeCCCCCEEEEEEEcc---cEeecccC-----CCcCCeeEeeEEEeEEE
Confidence 44554554 4556667999999999988 66667543 455 4999999843
No 173
>PF04753 Corona_NS2: Coronavirus non-structural protein NS2; InterPro: IPR006841 This is a family of Coronavirus nonstructural protein NS2. Phosphoamino acid analysis confirmed the phosphorylated nature of NS2 and identified serine and threonine as its phosphorylated amino acid residues []. It was also demonstrated that the ns2 gene product is not essential for Murine hepatitis virus replication in transformed murine cells [].
Probab=20.73 E-value=1.5e+02 Score=23.14 Aligned_cols=41 Identities=27% Similarity=0.367 Sum_probs=31.3
Q ss_pred CccceEEEEechhhhhcCCCcceeEEeeecCCCC-CcceEEE
Q 045047 114 DQLLGFTLVPLSEVLLNNGKLDTEFSLSSTDFLH-SPAGFVQ 154 (188)
Q Consensus 114 Dd~IG~a~VpL~ell~~~G~~~~~~~l~s~d~~~-kp~G~V~ 154 (188)
---+|.+.||+..-..+.|+....|.|.+.+..| +.=|.|.
T Consensus 33 ~P~VGYCrVP~~aWCrnqG~F~a~ftL~~~~k~~~~~fgvIt 74 (109)
T PF04753_consen 33 QPKVGYCRVPLKAWCRNQGKFAATFTLYSKSKSYDKYFGVIT 74 (109)
T ss_pred CCcceeEEcccHHHHhccCcceeEEEEeccccccccceeeEE
Confidence 3459999999999998889999999998887533 3344443
Done!