BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045051
         (700 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GGV|A Chain A, Crystal Structure Of The C123s Mutant Of Dienelactone
           Hydrolase (Dlh) Bound With The Pms Moiety Of The
           Protease Inhibitor, Phenylmethylsulfonyl Fluoride (Pmsf)
          Length = 232

 Score = 30.0 bits (66), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 601 DQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRAGFKQLE 650
           DQG      ++Y + A    A +  +  +R + YK WQA ++ AG   LE
Sbjct: 53  DQGYAAVCPDLYARQAPGT-ALDPQDEAQREQAYKLWQAFDMEAGVGDLE 101


>pdb|4I8E|X Chain X, Gspb Plus Alpha-2,3-Sialyl (1-Thioethyl)galactose
          Length = 391

 Score = 29.6 bits (65), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 530 YRMRNLPDDTVVINSP-------RDAVLELIKKINPDIFIHGVVNGTY 570
           +R++  P++TV +N+P       ++ V E +KK NPD+    V+N  Y
Sbjct: 293 FRIK-TPENTVFVNNPNQLTEVEKNLVREAVKKSNPDLRAQDVLNSNY 339


>pdb|3QC5|X Chain X, Gspb
 pdb|3QC6|X Chain X, Gspb
          Length = 360

 Score = 29.3 bits (64), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 8/48 (16%)

Query: 530 YRMRNLPDDTVVINSP-------RDAVLELIKKINPDIFIHGVVNGTY 570
           +R++  P++TV +N+P       ++ V E +KK NPD+    V+N  Y
Sbjct: 278 FRIK-TPENTVFVNNPNQLTEVEKNLVREAVKKSNPDLRAQDVLNSNY 324


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,599,952
Number of Sequences: 62578
Number of extensions: 842538
Number of successful extensions: 2409
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2408
Number of HSP's gapped (non-prelim): 9
length of query: 700
length of database: 14,973,337
effective HSP length: 106
effective length of query: 594
effective length of database: 8,340,069
effective search space: 4954000986
effective search space used: 4954000986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)