Query 045051
Match_columns 700
No_of_seqs 238 out of 724
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 6E-111 1E-115 909.1 38.9 370 325-696 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.0 0.032 7E-07 57.8 16.9 190 407-648 34-225 (247)
3 TIGR02752 MenG_heptapren 2-hep 96.2 0.4 8.7E-06 48.4 18.1 116 421-566 35-151 (231)
4 TIGR00740 methyltransferase, p 96.0 0.22 4.7E-06 51.1 15.1 106 431-564 53-159 (239)
5 PRK14103 trans-aconitate 2-met 95.3 0.56 1.2E-05 48.6 15.3 114 422-573 20-133 (255)
6 TIGR02716 C20_methyl_CrtF C-20 94.7 0.47 1E-05 50.6 13.2 110 420-560 138-248 (306)
7 PLN02233 ubiquinone biosynthes 94.1 4.5 9.8E-05 42.5 18.6 106 430-561 72-177 (261)
8 COG2226 UbiE Methylase involve 93.5 7.9 0.00017 40.9 18.9 138 403-572 22-162 (238)
9 PRK06202 hypothetical protein; 93.2 1.3 2.9E-05 45.1 12.5 144 393-564 22-165 (232)
10 TIGR01934 MenG_MenH_UbiE ubiqu 92.7 11 0.00024 37.2 19.1 112 421-563 29-140 (223)
11 PF13489 Methyltransf_23: Meth 92.3 1.4 3E-05 41.1 10.4 96 429-567 20-117 (161)
12 PF13847 Methyltransf_31: Meth 90.9 1.3 2.8E-05 42.1 8.7 105 430-563 2-107 (152)
13 PF01209 Ubie_methyltran: ubiE 90.5 1.3 2.8E-05 46.1 9.0 110 422-560 38-147 (233)
14 PRK08317 hypothetical protein; 90.1 20 0.00044 35.5 16.8 111 423-563 11-121 (241)
15 PTZ00098 phosphoethanolamine N 89.4 11 0.00024 39.7 14.9 115 417-563 38-153 (263)
16 PRK00216 ubiE ubiquinone/menaq 89.2 24 0.00053 35.2 16.7 43 423-471 43-85 (239)
17 TIGR00477 tehB tellurite resis 88.6 4.3 9.4E-05 40.7 10.8 111 418-561 17-128 (195)
18 PLN02585 magnesium protoporphy 88.6 11 0.00023 41.3 14.5 103 431-564 144-248 (315)
19 PF13649 Methyltransf_25: Meth 88.5 1.3 2.9E-05 39.1 6.3 94 435-555 1-95 (101)
20 PRK01683 trans-aconitate 2-met 88.4 8.1 0.00018 39.9 13.0 111 420-566 20-130 (258)
21 smart00138 MeTrc Methyltransfe 87.0 1.6 3.4E-05 46.2 6.8 42 430-471 98-141 (264)
22 PRK11207 tellurite resistance 84.3 10 0.00022 38.0 10.9 110 420-562 19-130 (197)
23 PLN02396 hexaprenyldihydroxybe 84.3 14 0.00031 40.5 12.8 98 432-563 132-232 (322)
24 PLN02336 phosphoethanolamine N 83.3 28 0.0006 39.5 15.0 111 421-563 256-366 (475)
25 PF09243 Rsm22: Mitochondrial 83.1 6.4 0.00014 42.0 9.3 138 415-583 13-156 (274)
26 PF08241 Methyltransf_11: Meth 82.4 4.4 9.6E-05 34.0 6.4 92 436-562 1-93 (95)
27 PRK12335 tellurite resistance 81.9 11 0.00024 40.0 10.6 96 434-562 123-219 (287)
28 COG2227 UbiG 2-polyprenyl-3-me 81.3 4.2 9.2E-05 43.0 6.9 100 430-562 58-157 (243)
29 PLN02244 tocopherol O-methyltr 80.0 17 0.00038 39.7 11.5 99 431-562 118-219 (340)
30 TIGR03438 probable methyltrans 80.0 20 0.00042 38.6 11.7 110 432-564 64-176 (301)
31 PF00891 Methyltransf_2: O-met 77.1 8.3 0.00018 39.5 7.5 100 421-559 90-190 (241)
32 TIGR02072 BioC biotin biosynth 75.7 89 0.0019 31.0 16.7 110 421-565 21-134 (240)
33 PRK11036 putative S-adenosyl-L 75.4 41 0.00088 34.9 12.2 111 422-563 36-146 (255)
34 PLN02336 phosphoethanolamine N 73.8 39 0.00085 38.3 12.5 114 421-565 27-141 (475)
35 PRK05785 hypothetical protein; 73.4 56 0.0012 33.7 12.5 92 432-563 52-144 (226)
36 PF12847 Methyltransf_18: Meth 73.0 8.1 0.00017 34.1 5.5 104 434-564 4-109 (112)
37 PF02353 CMAS: Mycolic acid cy 71.5 22 0.00047 38.1 9.2 108 422-561 53-161 (273)
38 PRK15068 tRNA mo(5)U34 methylt 70.2 1.5E+02 0.0032 32.4 15.5 140 393-563 71-223 (322)
39 TIGR03439 methyl_EasF probable 70.1 42 0.00091 36.9 11.2 142 432-592 77-234 (319)
40 PRK10258 biotin biosynthesis p 69.4 91 0.002 32.0 13.0 42 421-471 32-73 (251)
41 COG1341 Predicted GTPase or GT 68.2 58 0.0012 37.1 11.9 156 415-618 90-254 (398)
42 TIGR02081 metW methionine bios 66.5 69 0.0015 31.8 11.1 30 433-470 15-44 (194)
43 PRK05134 bifunctional 3-demeth 66.3 1.5E+02 0.0033 29.9 13.8 102 429-563 46-148 (233)
44 PRK00274 ksgA 16S ribosomal RN 65.7 25 0.00053 37.3 8.1 56 407-471 13-73 (272)
45 TIGR02021 BchM-ChlM magnesium 64.2 59 0.0013 32.8 10.3 45 418-471 40-86 (219)
46 COG2230 Cfa Cyclopropane fatty 60.2 1.2E+02 0.0026 33.1 12.1 110 425-566 66-178 (283)
47 PLN02490 MPBQ/MSBQ methyltrans 59.8 1.4E+02 0.0031 33.2 12.9 99 431-563 113-212 (340)
48 TIGR00138 gidB 16S rRNA methyl 59.1 74 0.0016 31.7 9.8 98 432-565 43-141 (181)
49 TIGR03587 Pse_Me-ase pseudamin 58.3 83 0.0018 32.0 10.1 100 433-567 45-144 (204)
50 PRK11705 cyclopropane fatty ac 54.1 1.2E+02 0.0025 34.2 11.2 106 422-563 158-264 (383)
51 PRK07580 Mg-protoporphyrin IX 52.9 1.1E+02 0.0024 30.6 10.0 100 430-564 62-163 (230)
52 PRK15001 SAM-dependent 23S rib 52.6 1.1E+02 0.0023 34.6 10.6 108 434-566 231-340 (378)
53 TIGR00452 methyltransferase, p 52.2 1.3E+02 0.0027 33.1 10.9 108 423-561 113-220 (314)
54 PF03848 TehB: Tellurite resis 51.7 2.6E+02 0.0057 28.7 12.4 109 421-562 20-129 (192)
55 PF03291 Pox_MCEL: mRNA cappin 51.4 81 0.0018 34.9 9.3 137 414-569 41-190 (331)
56 PRK10909 rsmD 16S rRNA m(2)G96 49.7 2.1E+02 0.0045 29.3 11.4 106 433-570 55-163 (199)
57 PF13679 Methyltransf_32: Meth 47.4 54 0.0012 31.1 6.4 40 428-471 22-62 (141)
58 TIGR00091 tRNA (guanine-N(7)-) 46.5 77 0.0017 31.7 7.6 32 432-470 17-48 (194)
59 PRK11873 arsM arsenite S-adeno 46.3 1.9E+02 0.0041 30.2 10.8 99 432-562 78-179 (272)
60 smart00650 rADc Ribosomal RNA 45.8 1E+02 0.0022 30.0 8.1 41 422-471 4-44 (169)
61 PRK00107 gidB 16S rRNA methylt 45.8 2.9E+02 0.0063 27.9 11.6 98 432-566 46-145 (187)
62 PTZ00338 dimethyladenosine tra 44.0 70 0.0015 34.7 7.3 46 417-471 18-67 (294)
63 PRK06922 hypothetical protein; 40.4 1.6E+02 0.0034 35.9 10.0 109 432-562 419-533 (677)
64 smart00828 PKS_MT Methyltransf 40.3 1.6E+02 0.0035 29.5 8.9 99 434-563 2-101 (224)
65 PRK01544 bifunctional N5-gluta 37.8 7.2E+02 0.016 29.1 15.7 149 325-487 5-181 (506)
66 COG4106 Tam Trans-aconitate me 37.3 90 0.0019 33.3 6.5 111 427-574 26-137 (257)
67 PRK11088 rrmA 23S rRNA methylt 35.0 1.5E+02 0.0032 31.2 7.9 37 431-471 85-121 (272)
68 cd00635 PLPDE_III_YBL036c_like 32.3 2.8E+02 0.006 28.3 9.2 71 431-505 117-198 (222)
69 TIGR01716 RGG_Cterm transcript 31.9 90 0.002 31.3 5.5 55 325-379 127-182 (220)
70 PRK09489 rsmC 16S ribosomal RN 31.9 4.2E+02 0.009 29.4 11.1 106 434-567 199-304 (342)
71 KOG1270 Methyltransferases [Co 31.6 89 0.0019 34.0 5.5 100 435-565 93-196 (282)
72 PRK14896 ksgA 16S ribosomal RN 31.1 1.9E+02 0.0042 30.3 8.0 46 417-471 11-60 (258)
73 PRK00121 trmB tRNA (guanine-N( 29.3 5.4E+02 0.012 25.9 10.6 34 431-471 40-73 (202)
74 PF13552 DUF4127: Protein of u 29.1 73 0.0016 37.1 4.8 68 530-600 77-152 (497)
75 TIGR02469 CbiT precorrin-6Y C5 29.1 1.5E+02 0.0033 26.1 6.0 32 433-471 21-52 (124)
76 KOG4300 Predicted methyltransf 28.6 7.5E+02 0.016 26.5 12.0 123 425-581 70-196 (252)
77 PRK13255 thiopurine S-methyltr 28.2 6.5E+02 0.014 26.0 11.1 31 432-471 38-68 (218)
78 cd05296 GH4_P_beta_glucosidase 28.0 2.9E+02 0.0063 31.6 9.2 58 447-511 14-73 (419)
79 PF05175 MTS: Methyltransferas 27.2 2.6E+02 0.0056 27.3 7.7 122 418-566 18-140 (170)
80 TIGR03534 RF_mod_PrmC protein- 26.8 2E+02 0.0044 29.1 7.1 79 431-531 87-165 (251)
81 KOG3178 Hydroxyindole-O-methyl 26.6 90 0.002 34.9 4.7 159 420-649 165-326 (342)
82 TIGR01983 UbiG ubiquinone bios 26.4 6.5E+02 0.014 25.0 13.4 100 431-563 45-146 (224)
83 cd02440 AdoMet_MTases S-adenos 25.7 3.6E+02 0.0077 21.7 8.6 30 434-471 1-30 (107)
84 TIGR02129 hisA_euk phosphoribo 24.8 82 0.0018 33.8 3.9 26 428-457 50-75 (253)
85 PRK13168 rumA 23S rRNA m(5)U19 24.7 6.3E+02 0.014 28.7 11.2 100 430-564 296-398 (443)
86 PRK03522 rumB 23S rRNA methylu 24.3 6.4E+02 0.014 27.3 10.7 98 432-564 174-272 (315)
87 PF07522 DRMBL: DNA repair met 23.5 3.1E+02 0.0068 25.0 7.0 37 520-566 71-107 (110)
88 COG2242 CobL Precorrin-6B meth 23.5 1.3E+02 0.0028 31.0 4.8 51 425-491 28-81 (187)
89 TIGR02085 meth_trns_rumB 23S r 23.2 7.2E+02 0.016 27.7 11.1 97 434-565 236-333 (374)
90 cd05197 GH4_glycoside_hydrolas 23.1 7.5E+02 0.016 28.4 11.4 58 447-512 14-73 (425)
91 COG2942 N-acyl-D-glucosamine 2 23.0 6.6E+02 0.014 28.8 10.6 90 397-505 178-285 (388)
92 TIGR00755 ksgA dimethyladenosi 22.5 5.3E+02 0.011 26.8 9.4 40 423-471 21-60 (253)
93 TIGR00492 alr alanine racemase 21.9 3.4E+02 0.0074 29.8 8.2 72 431-506 120-202 (367)
94 cd06815 PLPDE_III_AR_like_1 Ty 21.8 1.1E+03 0.023 25.9 12.6 33 432-468 118-155 (353)
95 smart00857 Resolvase Resolvase 21.4 4.8E+02 0.01 24.2 8.0 76 481-563 17-101 (148)
96 PRK03646 dadX alanine racemase 20.9 1.2E+02 0.0027 33.6 4.5 54 431-491 117-175 (355)
97 PF08242 Methyltransf_12: Meth 20.5 31 0.00068 29.9 -0.2 31 436-473 1-31 (99)
98 KOG2076 RNA polymerase III tra 20.3 2.5E+02 0.0054 35.1 7.1 35 319-353 133-167 (895)
99 PLN02446 (5-phosphoribosyl)-5- 20.2 1.1E+02 0.0023 33.1 3.7 27 428-455 55-81 (262)
100 PRK00771 signal recognition pa 20.1 9.9E+02 0.022 27.6 11.6 40 340-379 40-84 (437)
101 PRK07004 replicative DNA helic 20.1 2.3E+02 0.005 32.6 6.6 23 478-500 346-368 (460)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=6.2e-111 Score=909.09 Aligned_cols=370 Identities=40% Similarity=0.750 Sum_probs=357.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHhhcCCCCCccccccCCCCC---HHHHHHH
Q 045051 325 LWTLLTLCAQAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAGTRTPVQTHLASSRAS---AAEVLQA 401 (700)
Q Consensus 325 L~~LLi~CAqAVa~~d~~~A~~lL~~Irq~sSp~GD~~QRLA~yFa~AL~aRL~gtgs~~y~~l~s~~~s---~~e~lkA 401 (700)
|++||++||+||+.||...|+.+|++|++++||+||++||||+||++||.+||.+++++.|..+.....+ ..++++|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999877554443 6789999
Q ss_pred HHHHHhcCCccchhhHhhhHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHH
Q 045051 402 YKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERV 481 (700)
Q Consensus 402 y~lf~~~~Pf~k~a~f~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~l 481 (700)
|++|++.|||.||+|||||||||||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++ +...+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l 158 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL 158 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 68899
Q ss_pred HHHHHHHHHHHhhcCCcEEEEee-cccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcE
Q 045051 482 EETGHRLKCYSQRFGVPFEYNTI-AQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDI 560 (700)
Q Consensus 482 eeTGrRL~~~A~~~gVpFeF~~I-a~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~V 560 (700)
++||+||.+||+++||||||++| ..+||++++++|++++||+|||||+|+||||.|++....+||+.||+.||+|+|+|
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 99999999999999999999996 68999999999999999999999999999999998888889999999999999999
Q ss_pred EEEEeecCCCCCCCchHHHHHHHhhhHHHhHhhhhcCCCCCHHHHHHHHHHHhhccchhhhccCCcccccccchhHHHHH
Q 045051 561 FIHGVVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQAR 640 (700)
Q Consensus 561 fv~~e~ng~~nsp~F~~RF~EAL~yYSAlFDsLdat~pr~~~eR~~iEr~~~greI~NvVAcEG~~RvER~Ety~qWq~R 640 (700)
||++|+|++||+|+|++||.|||+||+|+|||||+++|+++++|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccccCCHHHHHHHHHHHHhcCCCCcEEEecCCEEEEeeCCceeEEEeeee
Q 045051 641 NLRAGFKQLELDKDILKTIRTLVKSNFHPDFVIDEAGEWMLQGWKGRLAYALSFWK 696 (700)
Q Consensus 641 ~~rAGF~~lpLs~~~v~qak~ll~~~y~k~f~v~ed~~wLlLgWKgr~L~a~SaW~ 696 (700)
|.+|||+++||++.++.|||.+|+.+++++|.|+++++||+|||||+||+++|+||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 99999999999999999999999976668999999999999999999999999997
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.01 E-value=0.032 Score=57.80 Aligned_cols=190 Identities=16% Similarity=0.220 Sum_probs=95.3
Q ss_pred hcCCccchhhHhhhHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHH
Q 045051 407 SSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGH 486 (700)
Q Consensus 407 ~~~Pf~k~a~f~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGr 486 (700)
...|.....+-.+...+-..+ ...-+|+|+|.+.|.--. .|+.+- ..|..++||||.. .+.++.+.+
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~--~~~~~vLDlGcGtG~~~~----~l~~~~-~~~~~~v~gvD~S------~~ml~~A~~ 100 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFV--QPGTQVYDLGCSLGAATL----SVRRNI-HHDNCKIIAIDNS------PAMIERCRR 100 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhC--CCCCEEEEEcccCCHHHH----HHHHhc-CCCCCeEEEEeCC------HHHHHHHHH
Confidence 345666655554443322222 233579999999995322 333321 1356899999963 345666555
Q ss_pred HHHHHHhhcCCcEEEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcE-EEEE
Q 045051 487 RLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDI-FIHG 564 (700)
Q Consensus 487 RL~~~A~~~gVpFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~V-fv~~ 564 (700)
++.++.. ...++| +...++++.. ....+++ |.+.|||+.++ .+..+|+.| +.|+|.- ++++
T Consensus 101 ~~~~~~~--~~~v~~--~~~d~~~~~~-----~~~D~vv--~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 101 HIDAYKA--PTPVDV--IEGDIRDIAI-----ENASMVV--LNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred HHHhcCC--CCCeEE--EeCChhhCCC-----CCCCEEe--hhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 5544221 113444 2333333322 2233433 45778888643 245677666 7889974 4455
Q ss_pred eecCCCCCCCchHHHHHHHhhhHHHhHhhhhcCCCCCHHHHHHHHHHHhhccchhhhccCCcccccccchhHHHHHHHhC
Q 045051 565 VVNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACEGIERVERPETYKQWQARNLRA 644 (700)
Q Consensus 565 e~ng~~nsp~F~~RF~EAL~yYSAlFDsLdat~pr~~~eR~~iEr~~~greI~NvVAcEG~~RvER~Ety~qWq~R~~rA 644 (700)
+.-.. ..+..-.++.+....|. .....+ ...+++. .... +++-+|++..+...+++.|
T Consensus 164 e~~~~-~~~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~---------~~~~~~~~~~~~~~~L~~a 221 (247)
T PRK15451 164 EKFSF-EDAKVGELLFNMHHDFK-----RANGYS-----ELEISQK--RSML---------ENVMLTDSVETHKARLHKA 221 (247)
T ss_pred EecCC-CcchhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHH---------HhhcccCCHHHHHHHHHHc
Confidence 43221 22222233333222221 111221 1122220 1112 2245577888999999999
Q ss_pred CCcc
Q 045051 645 GFKQ 648 (700)
Q Consensus 645 GF~~ 648 (700)
||+.
T Consensus 222 GF~~ 225 (247)
T PRK15451 222 GFEH 225 (247)
T ss_pred Cchh
Confidence 9985
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.18 E-value=0.4 Score=48.45 Aligned_cols=116 Identities=13% Similarity=0.219 Sum_probs=60.1
Q ss_pred HHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045051 421 RMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFE 500 (700)
Q Consensus 421 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFe 500 (700)
+.++..+.-...-+|+|+|.+.|. | ...|+.+ .+|..++||||.. .+.++.+.+++. ..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~-~---~~~la~~--~~~~~~v~gvD~s------~~~~~~a~~~~~----~~~~~-~ 97 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTAD-W---SIALAEA--VGPEGHVIGLDFS------ENMLSVGRQKVK----DAGLH-N 97 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCH-H---HHHHHHH--hCCCCEEEEEECC------HHHHHHHHHHHH----hcCCC-c
Confidence 445555543444689999999996 2 2344433 2345689999973 244555444443 23333 1
Q ss_pred EEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHH-HHHhhCCcEEEEEee
Q 045051 501 YNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLE-LIKKINPDIFIHGVV 566 (700)
Q Consensus 501 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~-~IR~L~P~Vfv~~e~ 566 (700)
...+....+++... ...=++|+ +.+.+|++.+ + ..+|+ ..|.|+|.-.++...
T Consensus 98 v~~~~~d~~~~~~~---~~~fD~V~--~~~~l~~~~~-------~-~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 98 VELVHGNAMELPFD---DNSFDYVT--IGFGLRNVPD-------Y-MQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred eEEEEechhcCCCC---CCCccEEE--EecccccCCC-------H-HHHHHHHHHHcCcCeEEEEEE
Confidence 22222222322211 11113343 4466777753 2 34555 457889986554433
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=95.98 E-value=0.22 Score=51.09 Aligned_cols=106 Identities=18% Similarity=0.352 Sum_probs=60.4
Q ss_pred CeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc
Q 045051 431 TRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQN 510 (700)
Q Consensus 431 ~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~ 510 (700)
..-+|+|+|.+.|. ++..|+++- ..|..++||||.. .+.++.+.+++.++.. +...+| +...+++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~-~~p~~~v~gvD~s------~~ml~~a~~~~~~~~~--~~~v~~--~~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNS------QPMVERCRQHIAAYHS--EIPVEI--LCNDIRH 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhc-CCCCCeEEEEeCC------HHHHHHHHHHHHhcCC--CCCeEE--EECChhh
Confidence 44589999999993 444455431 1356899999963 3456666556544321 223344 3333333
Q ss_pred cCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEEE
Q 045051 511 IQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIHG 564 (700)
Q Consensus 511 i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~~ 564 (700)
+.. .... +|-|.+.|||+.++ .+..+|+.| |.|+|.-.++.
T Consensus 118 ~~~-----~~~d--~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 118 VEI-----KNAS--MVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CCC-----CCCC--EEeeecchhhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence 322 2223 34467788888643 134566665 77899875543
No 5
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.30 E-value=0.56 Score=48.63 Aligned_cols=114 Identities=23% Similarity=0.367 Sum_probs=64.1
Q ss_pred HHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEE
Q 045051 422 MILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEY 501 (700)
Q Consensus 422 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF 501 (700)
.+++.+.-...-+|+|+|.+.| .+...|+.+- |..++||||.. ...++ .|++-++.|.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G----~~~~~l~~~~---p~~~v~gvD~s------~~~~~--------~a~~~~~~~~- 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPG----NLTRYLARRW---PGAVIEALDSS------PEMVA--------AARERGVDAR- 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCC----HHHHHHHHHC---CCCEEEEEECC------HHHHH--------HHHhcCCcEE-
Confidence 4566665456678999999999 3455666652 34689999963 22232 3344455542
Q ss_pred EeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEEeecCCCCCC
Q 045051 502 NTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAP 573 (700)
Q Consensus 502 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~e~ng~~nsp 573 (700)
....+ ++. ..+.+=+|-|.+.|||+.| |...+-+..+.|+|.-.++....++...+
T Consensus 78 ---~~d~~-----~~~-~~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 133 (255)
T PRK14103 78 ---TGDVR-----DWK-PKPDTDVVVSNAALQWVPE-------HADLLVRWVDELAPGSWIAVQVPGNFDAP 133 (255)
T ss_pred ---EcChh-----hCC-CCCCceEEEEehhhhhCCC-------HHHHHHHHHHhCCCCcEEEEEcCCCcCCh
Confidence 11222 221 1233444555667788864 33344445588999876655444443333
No 6
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.75 E-value=0.47 Score=50.59 Aligned_cols=110 Identities=13% Similarity=0.160 Sum_probs=61.0
Q ss_pred hHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcE
Q 045051 420 NRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPF 499 (700)
Q Consensus 420 NqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpF 499 (700)
.+.|++.+.-.+.-+|+|+|-+.| .+...++++. |.+++|+++.| +.++.+.++ ++..|+.=
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G----~~~~~~~~~~---p~~~~~~~D~~-------~~~~~a~~~----~~~~gl~~ 199 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIG----DISAAMLKHF---PELDSTILNLP-------GAIDLVNEN----AAEKGVAD 199 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchh----HHHHHHHHHC---CCCEEEEEecH-------HHHHHHHHH----HHhCCccc
Confidence 566777776566679999999999 3444555542 56899999964 335544433 34445431
Q ss_pred EEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcE
Q 045051 500 EYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDI 560 (700)
Q Consensus 500 eF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~V 560 (700)
.++.+.....+. .+...+++++ ..-||+..++. ...+|+.+ +.|+|.-
T Consensus 200 rv~~~~~d~~~~-----~~~~~D~v~~--~~~lh~~~~~~------~~~il~~~~~~L~pgG 248 (306)
T TIGR02716 200 RMRGIAVDIYKE-----SYPEADAVLF--CRILYSANEQL------STIMCKKAFDAMRSGG 248 (306)
T ss_pred eEEEEecCccCC-----CCCCCCEEEe--EhhhhcCChHH------HHHHHHHHHHhcCCCC
Confidence 222333222111 1222334332 33456655432 24577666 7899954
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=94.09 E-value=4.5 Score=42.53 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=59.8
Q ss_pred cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccc
Q 045051 430 ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQ 509 (700)
Q Consensus 430 ~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E 509 (700)
...-+|+|+|.+.|. +...|+.+- +|.-+|||||.. .+.++.+.++....+....-..+|. ....
T Consensus 72 ~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S------~~ml~~A~~r~~~~~~~~~~~i~~~--~~d~- 136 (261)
T PLN02233 72 KMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFS------SEQLAVAASRQELKAKSCYKNIEWI--EGDA- 136 (261)
T ss_pred CCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECC------HHHHHHHHHHhhhhhhccCCCeEEE--Eccc-
Confidence 345689999999996 334455442 234589999963 3455555555432222222223332 2222
Q ss_pred ccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEE
Q 045051 510 NIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIF 561 (700)
Q Consensus 510 ~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vf 561 (700)
+++....+.+=+|-|.+.|||+.| |...+-+..|-|+|.-.
T Consensus 137 ----~~lp~~~~sfD~V~~~~~l~~~~d-------~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 137 ----TDLPFDDCYFDAITMGYGLRNVVD-------RLKAMQEMYRVLKPGSR 177 (261)
T ss_pred ----ccCCCCCCCEeEEEEecccccCCC-------HHHHHHHHHHHcCcCcE
Confidence 333333344556667788998864 33444445588999743
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=93.49 E-value=7.9 Score=40.87 Aligned_cols=138 Identities=17% Similarity=0.251 Sum_probs=85.5
Q ss_pred HHHHhcCCccchh-hHhhhHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHH
Q 045051 403 KVYVSSCPFNRMT-FFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERV 481 (700)
Q Consensus 403 ~lf~~~~Pf~k~a-~f~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~l 481 (700)
..|=..+.++.|+ |..=++...+.+.-.+-.+|.|.+.|-| .|.-++.. +-| .-+|||||.. ..-|
T Consensus 22 ~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTG-d~a~~~~k---~~g---~g~v~~~D~s------~~ML 88 (238)
T COG2226 22 KKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTG-DMALLLAK---SVG---TGEVVGLDIS------ESML 88 (238)
T ss_pred HHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCcc-HHHHHHHH---hcC---CceEEEEECC------HHHH
Confidence 3344455666666 4555666666554447899999999999 44444443 333 7899999974 3445
Q ss_pred HHHHHHHHHHHhhcCCc-EEEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCc
Q 045051 482 EETGHRLKCYSQRFGVP-FEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPD 559 (700)
Q Consensus 482 eeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~ 559 (700)
+...+|+.+ .|+- ++| |.... +.|....+-+=+|.|.|.|||+.| .+.+|+-+ |=++|.
T Consensus 89 ~~a~~k~~~----~~~~~i~f--v~~dA-----e~LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpg 149 (238)
T COG2226 89 EVAREKLKK----KGVQNVEF--VVGDA-----ENLPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPG 149 (238)
T ss_pred HHHHHHhhc----cCccceEE--EEech-----hhCCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCC
Confidence 555555443 3322 444 33333 444445566668999999999986 35677655 889999
Q ss_pred EEEEEeecCCCCC
Q 045051 560 IFIHGVVNGTYNA 572 (700)
Q Consensus 560 Vfv~~e~ng~~ns 572 (700)
..+++..=+....
T Consensus 150 G~~~vle~~~p~~ 162 (238)
T COG2226 150 GRLLVLEFSKPDN 162 (238)
T ss_pred eEEEEEEcCCCCc
Confidence 8655444333333
No 9
>PRK06202 hypothetical protein; Provisional
Probab=93.21 E-value=1.3 Score=45.14 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=72.1
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHhhhHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCC
Q 045051 393 ASAAEVLQAYKVYVSSCPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQ 472 (700)
Q Consensus 393 ~s~~e~lkAy~lf~~~~Pf~k~a~f~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq 472 (700)
..++++.+.|+.|-...++..--+-+-.+.+...+...+...|+|+|.|.|. +...|.....+ ..|..+|||||..
T Consensus 22 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~--~g~~~~v~gvD~s- 97 (232)
T PRK06202 22 CDPARLDRTYAGFRRVNRIVAGWRGLYRRLLRPALSADRPLTLLDIGCGGGD-LAIDLARWARR--DGLRLEVTAIDPD- 97 (232)
T ss_pred cCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcCCCCCcEEEEeccCCCH-HHHHHHHHHHh--CCCCcEEEEEcCC-
Confidence 3455666666665554443321112222233223333456789999999995 33333222211 1345799999963
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHH
Q 045051 473 PGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLEL 552 (700)
Q Consensus 473 ~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~ 552 (700)
.+.++.+.+++ ..-++.+.. +. .+++...++.+=+|-|.+.|||+.|+. ...+|+.
T Consensus 98 -----~~~l~~a~~~~----~~~~~~~~~--~~-------~~~l~~~~~~fD~V~~~~~lhh~~d~~------~~~~l~~ 153 (232)
T PRK06202 98 -----PRAVAFARANP----RRPGVTFRQ--AV-------SDELVAEGERFDVVTSNHFLHHLDDAE------VVRLLAD 153 (232)
T ss_pred -----HHHHHHHHhcc----ccCCCeEEE--Ee-------cccccccCCCccEEEECCeeecCChHH------HHHHHHH
Confidence 23344333221 122454443 21 111211223444555667799998642 3467877
Q ss_pred HHhhCCcEEEEE
Q 045051 553 IKKINPDIFIHG 564 (700)
Q Consensus 553 IR~L~P~Vfv~~ 564 (700)
+.++--.++++.
T Consensus 154 ~~r~~~~~~~i~ 165 (232)
T PRK06202 154 SAALARRLVLHN 165 (232)
T ss_pred HHHhcCeeEEEe
Confidence 765544455443
No 10
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.70 E-value=11 Score=37.19 Aligned_cols=112 Identities=19% Similarity=0.340 Sum_probs=59.2
Q ss_pred HHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045051 421 RMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFE 500 (700)
Q Consensus 421 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFe 500 (700)
+.+++.+...+..+|+|+|.+.|. +...++.+ +|+..++|+|+.. ...++.+.+++. ..-...
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~------~~~~~~~~~~~~-----~~~~i~ 91 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFS------SEMLEVAKKKSE-----LPLNIE 91 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECC------HHHHHHHHHHhc-----cCCCce
Confidence 445555555567899999999984 33344433 2444789999963 233444443332 112233
Q ss_pred EEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEE
Q 045051 501 YNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIH 563 (700)
Q Consensus 501 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~ 563 (700)
|.. ....++. ...+.+=+|-+.+.+|++.+ +...+-+..+.|+|.-.++
T Consensus 92 ~~~--~d~~~~~-----~~~~~~D~i~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~ 140 (223)
T TIGR01934 92 FIQ--ADAEALP-----FEDNSFDAVTIAFGLRNVTD-------IQKALREMYRVLKPGGRLV 140 (223)
T ss_pred EEe--cchhcCC-----CCCCcEEEEEEeeeeCCccc-------HHHHHHHHHHHcCCCcEEE
Confidence 322 2222221 12233444445666777653 3344444557789976554
No 11
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=92.25 E-value=1.4 Score=41.13 Aligned_cols=96 Identities=21% Similarity=0.424 Sum_probs=55.5
Q ss_pred hcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccc
Q 045051 429 KATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKW 508 (700)
Q Consensus 429 g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~ 508 (700)
..+.-.|+|+|.+.| . +++.|+.+ |. ++||||.. ...++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~~------~~~~~~-----------~~~~~~~~~~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDIS------PQMIEK-----------RNVVFDNFDAQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEESS------HHHHHH-----------TTSEEEEEECH---
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEECC------HHHHhh-----------hhhhhhhhhhh---
Confidence 466779999999999 3 44555544 22 99999963 222222 22232211111
Q ss_pred cccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEE-Eeec
Q 045051 509 QNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIH-GVVN 567 (700)
Q Consensus 509 E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~-~e~n 567 (700)
+.....+-+=+|-|...|+|+.| |. .+|+.| +.|+|.-+++ ...+
T Consensus 71 ------~~~~~~~~fD~i~~~~~l~~~~d-------~~-~~l~~l~~~LkpgG~l~~~~~~ 117 (161)
T PF13489_consen 71 ------DPPFPDGSFDLIICNDVLEHLPD-------PE-EFLKELSRLLKPGGYLVISDPN 117 (161)
T ss_dssp ------THHCHSSSEEEEEEESSGGGSSH-------HH-HHHHHHHHCEEEEEEEEEEEEB
T ss_pred ------hhhccccchhhHhhHHHHhhccc-------HH-HHHHHHHHhcCCCCEEEEEEcC
Confidence 11223345666777799999984 34 455555 7789965544 4443
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=90.93 E-value=1.3 Score=42.11 Aligned_cols=105 Identities=20% Similarity=0.432 Sum_probs=58.8
Q ss_pred cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccc
Q 045051 430 ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP-FEYNTIAQKW 508 (700)
Q Consensus 430 ~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~ 508 (700)
.+..+|+|+|.+.|.. ...|+.+- .|..+|||||.. .+.++ +..+.+++.+++ .+| +...+
T Consensus 2 ~~~~~iLDlGcG~G~~----~~~l~~~~--~~~~~i~gvD~s------~~~i~----~a~~~~~~~~~~ni~~--~~~d~ 63 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRL----LIQLAKEL--NPGAKIIGVDIS------EEMIE----YAKKRAKELGLDNIEF--IQGDI 63 (152)
T ss_dssp TTTSEEEEET-TTSHH----HHHHHHHS--TTTSEEEEEESS------HHHHH----HHHHHHHHTTSTTEEE--EESBT
T ss_pred CCCCEEEEecCcCcHH----HHHHHHhc--CCCCEEEEEECc------HHHHH----Hhhcccccccccccce--EEeeh
Confidence 3567899999999943 33344221 224569999973 33343 344456677887 444 33444
Q ss_pred cccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEE
Q 045051 509 QNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIH 563 (700)
Q Consensus 509 E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~ 563 (700)
+++.-. +. +.+=+|.+...++|+.+ |...+-+.++.|+|...++
T Consensus 64 ~~l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i 107 (152)
T PF13847_consen 64 EDLPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILI 107 (152)
T ss_dssp TCGCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEE
T ss_pred hccccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEE
Confidence 443322 22 33334445555566653 3344445578899987654
No 13
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=90.53 E-value=1.3 Score=46.13 Aligned_cols=110 Identities=21% Similarity=0.346 Sum_probs=60.3
Q ss_pred HHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEE
Q 045051 422 MILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEY 501 (700)
Q Consensus 422 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF 501 (700)
.+++.+...+-.+|+|.+.+.|--+.. |+.+- +|.-+|||+|.. .+-++.+.+++.+.... ..+|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~--~~~~~v~~vD~s------~~ML~~a~~k~~~~~~~---~i~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRV--GPNGKVVGVDIS------PGMLEVARKKLKREGLQ---NIEF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGS--S---EEEEEES-------HHHHHHHHHHHHHTT-----SEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHC--CCccEEEEecCC------HHHHHHHHHHHHhhCCC---CeeE
Confidence 445556666777999999999954433 44432 234599999973 34566666666654332 2333
Q ss_pred EeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcE
Q 045051 502 NTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDI 560 (700)
Q Consensus 502 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~V 560 (700)
. . -+.++|....+.+=+|-|.|.||++.| +...+-+..|-|+|.-
T Consensus 103 v--~-----~da~~lp~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG 147 (233)
T PF01209_consen 103 V--Q-----GDAEDLPFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGG 147 (233)
T ss_dssp E--E------BTTB--S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEE
T ss_pred E--E-----cCHHHhcCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCe
Confidence 2 1 245556666677889999999999986 3334445668899965
No 14
>PRK08317 hypothetical protein; Provisional
Probab=90.06 E-value=20 Score=35.47 Aligned_cols=111 Identities=17% Similarity=0.242 Sum_probs=57.7
Q ss_pred HHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEE
Q 045051 423 ILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYN 502 (700)
Q Consensus 423 IleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~ 502 (700)
+++.+.-...-+|+|+|.+.|. |.. .++.+- +|.-++|||+.. ...++.+.++.. ..+...+|.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~~------~~~~~~a~~~~~----~~~~~~~~~ 74 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDRS------EAMLALAKERAA----GLGPNVEFV 74 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeCC------HHHHHHHHHHhh----CCCCceEEE
Confidence 4555555566789999999883 433 333332 245699999963 233444333311 112223333
Q ss_pred eecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEE
Q 045051 503 TIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIH 563 (700)
Q Consensus 503 ~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~ 563 (700)
. ...+.+ ....+.+=+|-+...++|+.| |...+-+..+.|+|.-.++
T Consensus 75 ~--~d~~~~-----~~~~~~~D~v~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~ 121 (241)
T PRK08317 75 R--GDADGL-----PFPDGSFDAVRSDRVLQHLED-------PARALAEIARVLRPGGRVV 121 (241)
T ss_pred e--cccccC-----CCCCCCceEEEEechhhccCC-------HHHHHHHHHHHhcCCcEEE
Confidence 2 122221 122233334445566777754 3444445558899987554
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=89.39 E-value=11 Score=39.72 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=60.7
Q ss_pred HhhhHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcC
Q 045051 417 FMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFG 496 (700)
Q Consensus 417 f~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~g 496 (700)
+-+.+.|++.+.-....+|+|+|.+.|.- ...|+.+.+ .++|||+.. ...++.+.+++.. .
T Consensus 38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~----a~~la~~~~----~~v~giD~s------~~~~~~a~~~~~~-----~ 98 (263)
T PTZ00098 38 IEATTKILSDIELNENSKVLDIGSGLGGG----CKYINEKYG----AHVHGVDIC------EKMVNIAKLRNSD-----K 98 (263)
T ss_pred hHHHHHHHHhCCCCCCCEEEEEcCCCChh----hHHHHhhcC----CEEEEEECC------HHHHHHHHHHcCc-----C
Confidence 33456666666556677899999999962 234444332 589999963 2334444433321 1
Q ss_pred CcEEEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEE
Q 045051 497 VPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIH 563 (700)
Q Consensus 497 VpFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~ 563 (700)
-..+|... ... ++....+.+=+|-+...++|+..+ -+..+|+.+ +.|+|.-.++
T Consensus 99 ~~i~~~~~--D~~-----~~~~~~~~FD~V~s~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 99 NKIEFEAN--DIL-----KKDFPENTFDMIYSRDAILHLSYA------DKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred CceEEEEC--Ccc-----cCCCCCCCeEEEEEhhhHHhCCHH------HHHHHHHHHHHHcCCCcEEE
Confidence 12333221 111 122222223233344556676532 135666655 7799976554
No 16
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=89.22 E-value=24 Score=35.17 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=27.1
Q ss_pred HHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 423 ILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 423 IleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
+++.+.-....+|+|+|.+.|. +...++.+ +|+..++|+++..
T Consensus 43 ~~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s 85 (239)
T PRK00216 43 TIKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFS 85 (239)
T ss_pred HHHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCC
Confidence 3344433345789999999984 23333332 2457899999963
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=88.62 E-value=4.3 Score=40.65 Aligned_cols=111 Identities=11% Similarity=0.159 Sum_probs=61.9
Q ss_pred hhhHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCC
Q 045051 418 MANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGV 497 (700)
Q Consensus 418 ~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gV 497 (700)
.+...|++++.-...-+|+|+|.|.|.-- ..|+.+ | .++||||.. ...++.+ .+.++..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a----~~la~~-g----~~V~~iD~s------~~~l~~a----~~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNS----LYLSLA-G----YDVRAWDHN------PASIASV----LDMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHH----HHHHHC-C----CeEEEEECC------HHHHHHH----HHHHHHhCC
Confidence 45667777776555679999999999533 344444 3 489999973 2334333 233445577
Q ss_pred cEEEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEE
Q 045051 498 PFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIF 561 (700)
Q Consensus 498 pFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vf 561 (700)
+..+... .+.... +. ..=++++ |..-||++.++ .+..+++.+ |.|+|.-.
T Consensus 78 ~v~~~~~--d~~~~~---~~-~~fD~I~--~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAY--DINAAA---LN-EDYDFIF--STVVFMFLQAG------RVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEec--cchhcc---cc-CCCCEEE--EecccccCCHH------HHHHHHHHHHHHhCCCcE
Confidence 6444322 111111 11 1123443 33446676532 245677665 77899864
No 18
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=88.56 E-value=11 Score=41.33 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=58.3
Q ss_pred CeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHH-hhc-CCcEEEEeecccc
Q 045051 431 TRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYS-QRF-GVPFEYNTIAQKW 508 (700)
Q Consensus 431 ~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A-~~~-gVpFeF~~Ia~~~ 508 (700)
+...|+|+|.+.|. +...|+.+ | .+|||||.. ...++...++....- ... +...+|... .+
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S------~~ml~~A~~~~~~~~~~~~~~~~~~f~~~--Dl 206 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDIS------AAMVAEAERRAKEALAALPPEVLPKFEAN--DL 206 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHHHHHHHHHhcccccccccceEEEEc--ch
Confidence 45689999999995 44556554 3 489999974 344555555443210 001 123344321 22
Q ss_pred cccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEE
Q 045051 509 QNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHG 564 (700)
Q Consensus 509 E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~ 564 (700)
+ ++. +..=+|-|...|+|++++ ....+++.++++.|..+++.
T Consensus 207 ~-----~l~---~~fD~Vv~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 207 E-----SLS---GKYDTVTCLDVLIHYPQD------KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred h-----hcC---CCcCEEEEcCEEEecCHH------HHHHHHHHHHhhcCCEEEEE
Confidence 2 221 111133366667788764 23567888888888877764
No 19
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=88.48 E-value=1.3 Score=39.06 Aligned_cols=94 Identities=23% Similarity=0.386 Sum_probs=49.4
Q ss_pred EEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCcc
Q 045051 435 IVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLE 514 (700)
Q Consensus 435 IIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~~e 514 (700)
|+|+|.+.|.-=..|++.+ .. | |..++||||.. .+.++.+.++..+ .+++.+|. ...+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~--~~-~-~~~~~~gvD~s------~~~l~~~~~~~~~----~~~~~~~~--~~D~~----- 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF--DA-G-PSSRVIGVDIS------PEMLELAKKRFSE----DGPKVRFV--QADAR----- 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-------HHHHHHHHHHSHH----TTTTSEEE--ESCTT-----
T ss_pred CEEeecCCcHHHHHHHHHh--hh-c-ccceEEEEECC------HHHHHHHHHhchh----cCCceEEE--ECCHh-----
Confidence 7999999996666666655 11 2 56999999973 3455554443333 45566663 22222
Q ss_pred ccccCCCCeEEEEeecc-cccCCCCccccCCcHHHHHHHHHh
Q 045051 515 DLKIDREEMTVVNCLYR-MRNLPDDTVVINSPRDAVLELIKK 555 (700)
Q Consensus 515 dL~i~~dE~LaVN~~~~-L~~L~Desv~~~spRd~vL~~IR~ 555 (700)
++....+.+=+|-|.+. ++|+.++. +..+|+.+.+
T Consensus 60 ~l~~~~~~~D~v~~~~~~~~~~~~~~------~~~ll~~~~~ 95 (101)
T PF13649_consen 60 DLPFSDGKFDLVVCSGLSLHHLSPEE------LEALLRRIAR 95 (101)
T ss_dssp CHHHHSSSEEEEEE-TTGGGGSSHHH------HHHHHHHHHH
T ss_pred HCcccCCCeeEEEEcCCccCCCCHHH------HHHHHHHHHH
Confidence 23333344545555444 88876442 3466666543
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=88.39 E-value=8.1 Score=39.86 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=59.4
Q ss_pred hHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcE
Q 045051 420 NRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPF 499 (700)
Q Consensus 420 NqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpF 499 (700)
+..|++.+.-.+.-+|+|+|.+.| . +...|+.+. |..+++|||.. ...++.+.+++. + .
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G-~---~~~~la~~~---~~~~v~gvD~s------~~~i~~a~~~~~------~--~ 78 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPG-N---STELLVERW---PAARITGIDSS------PAMLAEARSRLP------D--C 78 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCC-H---HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHhCC------C--C
Confidence 445666665455678999999999 3 334555542 34689999963 233433332210 1 2
Q ss_pred EEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEEee
Q 045051 500 EYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVV 566 (700)
Q Consensus 500 eF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~e~ 566 (700)
+|.. ...+++.. .+.+=+|-|.+.||++.| +...+-+..+.|+|.-.++...
T Consensus 79 ~~~~--~d~~~~~~------~~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 79 QFVE--ADIASWQP------PQALDLIFANASLQWLPD-------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred eEEE--CchhccCC------CCCccEEEEccChhhCCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 3322 11221111 112223445567788765 3334444558889987665543
No 21
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=87.00 E-value=1.6 Score=46.20 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=30.4
Q ss_pred cCeeEEEEcccccccchHHHHHHHhcCC--CCCCeEEEeeecCC
Q 045051 430 ATRLHIVDFGIGYGFQWPCLIQRISKRP--GGPPKIRMTAIEFP 471 (700)
Q Consensus 430 ~~~VHIIDfgI~~G~QWp~Liq~La~R~--gGPP~LRITgI~~p 471 (700)
.+.++|.|.|.+.|--+-+|--.|++.- ...+..+|+|+|..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis 141 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID 141 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC
Confidence 4569999999999987666655555431 12347899999974
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=84.33 E-value=10 Score=38.04 Aligned_cols=110 Identities=10% Similarity=0.140 Sum_probs=58.6
Q ss_pred hHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-
Q 045051 420 NRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP- 498 (700)
Q Consensus 420 NqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp- 498 (700)
.+.+++.+.....-+|+|+|.+.|. +...|+++ | .+|||||.. .+.++.+.+ + ++..++.
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S------~~~i~~a~~-~---~~~~~~~~ 79 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKN------PMSIANLER-I---KAAENLDN 79 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCC------HHHHHHHHH-H---HHHcCCCc
Confidence 4445555544455689999999995 34456655 2 489999973 233443332 2 3334554
Q ss_pred EEEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEE
Q 045051 499 FEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFI 562 (700)
Q Consensus 499 FeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv 562 (700)
.++ +...++++.. . ..=++|+ |.+.+|++.++ .+..+++.| +.|+|.-.+
T Consensus 80 v~~--~~~d~~~~~~---~-~~fD~I~--~~~~~~~~~~~------~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 80 LHT--AVVDLNNLTF---D-GEYDFIL--STVVLMFLEAK------TIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred ceE--EecChhhCCc---C-CCcCEEE--EecchhhCCHH------HHHHHHHHHHHHcCCCcEE
Confidence 232 2223332221 1 1123344 34456776532 245666655 888998753
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=84.31 E-value=14 Score=40.45 Aligned_cols=98 Identities=16% Similarity=0.216 Sum_probs=54.7
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCC--cEEEEeeccccc
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGV--PFEYNTIAQKWQ 509 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gV--pFeF~~Ia~~~E 509 (700)
...|+|+|.+.|. +...|+. .| .++||||.. .+.++...++ ++.-++ ..+|.. ...+
T Consensus 132 g~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s------~~~i~~Ar~~----~~~~~~~~~i~~~~--~dae 190 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAV------DKNVKIARLH----ADMDPVTSTIEYLC--TTAE 190 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCC------HHHHHHHHHH----HHhcCcccceeEEe--cCHH
Confidence 4579999999996 4556664 33 489999963 2334333222 221111 233332 2223
Q ss_pred ccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEE
Q 045051 510 NIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIH 563 (700)
Q Consensus 510 ~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~ 563 (700)
++....+.+=+|-|..-|+|+.|. +.+|+.| +-|+|.-.++
T Consensus 191 -----~l~~~~~~FD~Vi~~~vLeHv~d~--------~~~L~~l~r~LkPGG~li 232 (322)
T PLN02396 191 -----KLADEGRKFDAVLSLEVIEHVANP--------AEFCKSLSALTIPNGATV 232 (322)
T ss_pred -----HhhhccCCCCEEEEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEE
Confidence 222222334466677788998863 3566666 6678976543
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=83.31 E-value=28 Score=39.53 Aligned_cols=111 Identities=10% Similarity=0.112 Sum_probs=61.1
Q ss_pred HHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045051 421 RMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFE 500 (700)
Q Consensus 421 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFe 500 (700)
..+++.+.-.+.-+|+|+|.+.|. +...|+.+.+ .++||||.. .+.++.+.++. ...+...+
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS------~~~l~~A~~~~----~~~~~~v~ 317 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS------VNMISFALERA----IGRKCSVE 317 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHHHHHh----hcCCCceE
Confidence 334444432344589999999994 4455666543 489999974 23444443332 22333444
Q ss_pred EEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEE
Q 045051 501 YNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIH 563 (700)
Q Consensus 501 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~ 563 (700)
|... .+.++ .+..+.+=+|-|...++|+.| |...+-+..|.|+|.-.++
T Consensus 318 ~~~~--d~~~~-----~~~~~~fD~I~s~~~l~h~~d-------~~~~l~~~~r~LkpgG~l~ 366 (475)
T PLN02336 318 FEVA--DCTKK-----TYPDNSFDVIYSRDTILHIQD-------KPALFRSFFKWLKPGGKVL 366 (475)
T ss_pred EEEc--CcccC-----CCCCCCEEEEEECCcccccCC-------HHHHHHHHHHHcCCCeEEE
Confidence 4322 22222 222233445667777888864 3334444558899987654
No 25
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=83.07 E-value=6.4 Score=41.95 Aligned_cols=138 Identities=19% Similarity=0.266 Sum_probs=75.4
Q ss_pred hhHhhhHHHHHhhhh----cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHH
Q 045051 415 TFFMANRMILKLAEK----ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKC 490 (700)
Q Consensus 415 a~f~ANqaIleA~~g----~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~ 490 (700)
+++.+-..||+.+.. -+--+|+|||-|-|. .+.-+...- |-..++|.||.. ..+.+.|++|.+
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGt---a~wAa~~~~---~~~~~~~~vd~s-------~~~~~l~~~l~~ 79 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGT---ALWAAREVW---PSLKEYTCVDRS-------PEMLELAKRLLR 79 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHH---HHHHHHHHh---cCceeeeeecCC-------HHHHHHHHHHHh
Confidence 456677777777753 245699999999883 222222111 134789999853 346677888765
Q ss_pred HHhhcCCcEEEEeecccc-cccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEEEeecC
Q 045051 491 YSQRFGVPFEYNTIAQKW-QNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIHGVVNG 568 (700)
Q Consensus 491 ~A~~~gVpFeF~~Ia~~~-E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~~e~ng 568 (700)
-... ..-. .| ..+..+.+.+.+.+.|+ +.|.|..|.++ .|..+++.+ .+.+| ++|++| .|
T Consensus 80 ~~~~--~~~~------~~~~~~~~~~~~~~~~DLvi--~s~~L~EL~~~------~r~~lv~~LW~~~~~-~LVlVE-pG 141 (274)
T PF09243_consen 80 AGPN--NRNA------EWRRVLYRDFLPFPPDDLVI--ASYVLNELPSA------ARAELVRSLWNKTAP-VLVLVE-PG 141 (274)
T ss_pred cccc--cccc------hhhhhhhcccccCCCCcEEE--EehhhhcCCch------HHHHHHHHHHHhccC-cEEEEc-CC
Confidence 3321 1110 01 11122223333333333 44666666652 467777777 66777 444444 35
Q ss_pred CCCCCCchHHHHHHH
Q 045051 569 TYNAPFFLPRFREAL 583 (700)
Q Consensus 569 ~~nsp~F~~RF~EAL 583 (700)
+..+--.+.+.|+.|
T Consensus 142 t~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 142 TPAGFRRIAEARDQL 156 (274)
T ss_pred ChHHHHHHHHHHHHH
Confidence 544444566777766
No 26
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=82.43 E-value=4.4 Score=33.99 Aligned_cols=92 Identities=24% Similarity=0.320 Sum_probs=53.1
Q ss_pred EEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCccc
Q 045051 436 VDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLED 515 (700)
Q Consensus 436 IDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~~ed 515 (700)
+|+|.+.|.....|.+. +-.++|+||.. .+.++.+.++ .+..++. | ...+.++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~------~~~~~~~~~~----~~~~~~~--~-------~~~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDIS------EEMLEQARKR----LKNEGVS--F-------RQGDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-------HHHHHHHHHH----TTTSTEE--E-------EESBTTS
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCC------HHHHHHHHhc----ccccCch--h-------eeehHHh
Confidence 58899988666655554 44899999963 2334433332 2233344 2 1223555
Q ss_pred cccCCCCeEEEEeecccccCCCCccccCCcHHHHHHH-HHhhCCcEEE
Q 045051 516 LKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLEL-IKKINPDIFI 562 (700)
Q Consensus 516 L~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~-IR~L~P~Vfv 562 (700)
+.+..+-+=+|-|...++|+. .+..+|+. .|-|+|.-+.
T Consensus 54 l~~~~~sfD~v~~~~~~~~~~--------~~~~~l~e~~rvLk~gG~l 93 (95)
T PF08241_consen 54 LPFPDNSFDVVFSNSVLHHLE--------DPEAALREIYRVLKPGGRL 93 (95)
T ss_dssp SSS-TT-EEEEEEESHGGGSS--------HHHHHHHHHHHHEEEEEEE
T ss_pred Cccccccccccccccceeecc--------CHHHHHHHHHHHcCcCeEE
Confidence 666667777888889999982 23455554 4788887554
No 27
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=81.85 E-value=11 Score=40.01 Aligned_cols=96 Identities=14% Similarity=0.238 Sum_probs=53.0
Q ss_pred EEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045051 434 HIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQL 513 (700)
Q Consensus 434 HIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~~ 513 (700)
+|+|+|.|.|. +...|+.+ | .++||||.. ...++ .+.+.|+..++.+++... ..+...
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s------~~ai~----~~~~~~~~~~l~v~~~~~--D~~~~~- 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDIN------QQSLE----NLQEIAEKENLNIRTGLY--DINSAS- 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHH----HHHHHHHHcCCceEEEEe--chhccc-
Confidence 89999999995 34445654 3 589999963 23343 333445666776555322 222111
Q ss_pred cccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEE
Q 045051 514 EDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFI 562 (700)
Q Consensus 514 edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv 562 (700)
+. ..=++++.+ +.||++.++ -+..+|+.+ +.++|.-.+
T Consensus 181 --~~-~~fD~I~~~--~vl~~l~~~------~~~~~l~~~~~~LkpgG~~ 219 (287)
T PRK12335 181 --IQ-EEYDFILST--VVLMFLNRE------RIPAIIKNMQEHTNPGGYN 219 (287)
T ss_pred --cc-CCccEEEEc--chhhhCCHH------HHHHHHHHHHHhcCCCcEE
Confidence 11 111344433 456676543 234666655 788997653
No 28
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=81.34 E-value=4.2 Score=43.03 Aligned_cols=100 Identities=25% Similarity=0.455 Sum_probs=67.9
Q ss_pred cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccc
Q 045051 430 ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQ 509 (700)
Q Consensus 430 ~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E 509 (700)
-..+-|.|+|.+-| .|-+.||.. | ..+||||... +.|+.+ ...|.+-||-.+|...
T Consensus 58 l~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se------~~I~~A----k~ha~e~gv~i~y~~~----- 113 (243)
T COG2227 58 LPGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASE------KPIEVA----KLHALESGVNIDYRQA----- 113 (243)
T ss_pred CCCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCCh------HHHHHH----HHhhhhccccccchhh-----
Confidence 46678999999988 777888854 4 8999999742 223322 1246666777777554
Q ss_pred ccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEE
Q 045051 510 NIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFI 562 (700)
Q Consensus 510 ~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv 562 (700)
.+++|.-..+-.=||-|+=-|+|++| |..-+....+.++|.-.+
T Consensus 114 --~~edl~~~~~~FDvV~cmEVlEHv~d-------p~~~~~~c~~lvkP~G~l 157 (243)
T COG2227 114 --TVEDLASAGGQFDVVTCMEVLEHVPD-------PESFLRACAKLVKPGGIL 157 (243)
T ss_pred --hHHHHHhcCCCccEEEEhhHHHccCC-------HHHHHHHHHHHcCCCcEE
Confidence 45555443355668889999999987 444444555888996543
No 29
>PLN02244 tocopherol O-methyltransferase
Probab=80.03 E-value=17 Score=39.72 Aligned_cols=99 Identities=16% Similarity=0.273 Sum_probs=56.2
Q ss_pred CeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc--EEEEeecccc
Q 045051 431 TRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP--FEYNTIAQKW 508 (700)
Q Consensus 431 ~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp--FeF~~Ia~~~ 508 (700)
+.-+|+|+|.+.|. +...|+.+.+ .++|||+.. ...++.+ .+.++..|+. .+|.. ...
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s------~~~i~~a----~~~~~~~g~~~~v~~~~--~D~ 177 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLS------PVQAARA----NALAAAQGLSDKVSFQV--ADA 177 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHH----HHHHHhcCCCCceEEEE--cCc
Confidence 44579999999994 4556666543 489999963 2233332 2234444543 44432 222
Q ss_pred cccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHH-HHHhhCCcEEE
Q 045051 509 QNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLE-LIKKINPDIFI 562 (700)
Q Consensus 509 E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~-~IR~L~P~Vfv 562 (700)
++ +....+.+=+|-|...++|+.| + ..+|+ ..|-|+|.-.+
T Consensus 178 ~~-----~~~~~~~FD~V~s~~~~~h~~d-------~-~~~l~e~~rvLkpGG~l 219 (340)
T PLN02244 178 LN-----QPFEDGQFDLVWSMESGEHMPD-------K-RKFVQELARVAAPGGRI 219 (340)
T ss_pred cc-----CCCCCCCccEEEECCchhccCC-------H-HHHHHHHHHHcCCCcEE
Confidence 22 2223344445667788889875 2 34554 45889996543
No 30
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=79.98 E-value=20 Score=38.60 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=64.8
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc-
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQN- 510 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~- 510 (700)
..+|||+|.|.|.-=..|+++|.. ..++||||.. .+.|+.+.++|..- --+++++ .|.....+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS------~~mL~~a~~~l~~~--~p~~~v~--~i~gD~~~~ 127 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDIS------ADALKESAAALAAD--YPQLEVH--GICADFTQP 127 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECC------HHHHHHHHHHHHhh--CCCceEE--EEEEcccch
Confidence 357999999999665667777642 4789999984 46678877777641 1234433 34333221
Q ss_pred cCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCc-EEEEE
Q 045051 511 IQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPD-IFIHG 564 (700)
Q Consensus 511 i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~-Vfv~~ 564 (700)
+.... ....+..+++.+-..++|+..+. ...+|+.| +.|+|. +|+++
T Consensus 128 ~~~~~-~~~~~~~~~~~~gs~~~~~~~~e------~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 128 LALPP-EPAAGRRLGFFPGSTIGNFTPEE------AVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred hhhhc-ccccCCeEEEEecccccCCCHHH------HHHHHHHHHHhcCCCCEEEEe
Confidence 11100 11112466666666788776432 34677777 678995 45543
No 31
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=77.08 E-value=8.3 Score=39.51 Aligned_cols=100 Identities=17% Similarity=0.294 Sum_probs=52.5
Q ss_pred HHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045051 421 RMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFE 500 (700)
Q Consensus 421 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFe 500 (700)
..++++..=...-+|||+|-+.| .+..+|+.+. |.||+|..|+|. .+ +.++. .=..+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dlp~-------v~-~~~~~--------~~rv~ 146 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDLPE-------VI-EQAKE--------ADRVE 146 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-HH-------HH-CCHHH--------TTTEE
T ss_pred hhhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeeccHh-------hh-hcccc--------ccccc
Confidence 34455554445558999999999 3333444432 679999999863 22 22222 11233
Q ss_pred EEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCc
Q 045051 501 YNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPD 559 (700)
Q Consensus 501 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~ 559 (700)
|.+- .+ - +.+.. +=+|-.-.-||+..|+.+ ..+|+.| +.|.|.
T Consensus 147 ~~~g--d~---f-~~~P~----~D~~~l~~vLh~~~d~~~------~~iL~~~~~al~pg 190 (241)
T PF00891_consen 147 FVPG--DF---F-DPLPV----ADVYLLRHVLHDWSDEDC------VKILRNAAAALKPG 190 (241)
T ss_dssp EEES---T---T-TCCSS----ESEEEEESSGGGS-HHHH------HHHHHHHHHHSEEC
T ss_pred cccc--cH---H-hhhcc----ccceeeehhhhhcchHHH------HHHHHHHHHHhCCC
Confidence 3221 11 0 22221 334445567788887653 3677766 678876
No 32
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=75.66 E-value=89 Score=31.03 Aligned_cols=110 Identities=16% Similarity=0.337 Sum_probs=56.3
Q ss_pred HHHHHhhhh---cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCC
Q 045051 421 RMILKLAEK---ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGV 497 (700)
Q Consensus 421 qaIleA~~g---~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gV 497 (700)
..+++.+.. .+..+|+|+|.+.|. +...|+.+ + |..++||||.. .+.++.+.+++. . ++
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~----~~~~l~~~--~-~~~~~~~~D~~------~~~~~~~~~~~~---~--~~ 82 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGY----LTRALLKR--F-PQAEFIALDIS------AGMLAQAKTKLS---E--NV 82 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccH----HHHHHHHh--C-CCCcEEEEeCh------HHHHHHHHHhcC---C--CC
Confidence 334444443 334789999999995 23334433 1 45789999963 233433333332 0 22
Q ss_pred cEEEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEEEe
Q 045051 498 PFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIHGV 565 (700)
Q Consensus 498 pFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~~e 565 (700)
+| +...++.+ ....+.+=+|-|.+.|||+.| + ..+|..+ +.|+|.-+++..
T Consensus 83 --~~--~~~d~~~~-----~~~~~~fD~vi~~~~l~~~~~-------~-~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 83 --QF--ICGDAEKL-----PLEDSSFDLIVSNLALQWCDD-------L-SQALSELARVLKPGGLLAFS 134 (240)
T ss_pred --eE--EecchhhC-----CCCCCceeEEEEhhhhhhccC-------H-HHHHHHHHHHcCCCcEEEEE
Confidence 22 22223222 222222333445566777753 3 3456655 678998665543
No 33
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=75.37 E-value=41 Score=34.93 Aligned_cols=111 Identities=16% Similarity=0.190 Sum_probs=60.8
Q ss_pred HHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEE
Q 045051 422 MILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEY 501 (700)
Q Consensus 422 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF 501 (700)
.|++.+. .+.-+|+|+|.+.|. +...|+.+ | .++||||.. .+.++.+.+++ +..|+.-..
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s------~~~l~~a~~~~----~~~g~~~~v 95 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLS------AEMIQRAKQAA----EAKGVSDNM 95 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECC------HHHHHHHHHHH----HhcCCccce
Confidence 3555554 345699999999993 44556655 2 489999963 34455444433 344543222
Q ss_pred EeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEE
Q 045051 502 NTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIH 563 (700)
Q Consensus 502 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~ 563 (700)
..+....+++.. ...+.+=+|-|...|+|+.| |...+-...+-|+|.-.+.
T Consensus 96 ~~~~~d~~~l~~----~~~~~fD~V~~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 96 QFIHCAAQDIAQ----HLETPVDLILFHAVLEWVAD-------PKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred EEEEcCHHHHhh----hcCCCCCEEEehhHHHhhCC-------HHHHHHHHHHHcCCCeEEE
Confidence 223333333211 11122323345566777753 4444555568899987654
No 34
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=73.83 E-value=39 Score=38.33 Aligned_cols=114 Identities=15% Similarity=0.227 Sum_probs=59.9
Q ss_pred HHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045051 421 RMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFE 500 (700)
Q Consensus 421 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFe 500 (700)
..|++.+.....-+|+|+|.+.|. +...|+.+ + -+|||||.. .+.++.. +.+.. ..-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~----~~~~la~~-~----~~v~giD~s------~~~l~~a-~~~~~----~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGR----FTGELAKK-A----GQVIALDFI------ESVIKKN-ESING----HYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCH----HHHHHHhh-C----CEEEEEeCC------HHHHHHH-HHHhc----cCCceE
Confidence 345566554444589999999994 33445544 2 178999963 2334332 21111 111123
Q ss_pred EEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEEEe
Q 045051 501 YNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIHGV 565 (700)
Q Consensus 501 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~~e 565 (700)
|.. ...++ .++....+.+=+|-|.+.++|+.++. +..+|..+ |.|+|.-+++..
T Consensus 87 ~~~--~d~~~---~~~~~~~~~fD~I~~~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 87 FMC--ADVTS---PDLNISDGSVDLIFSNWLLMYLSDKE------VENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EEE--ecccc---cccCCCCCCEEEEehhhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEEE
Confidence 321 11111 12222333344555667889997642 34666665 558998876543
No 35
>PRK05785 hypothetical protein; Provisional
Probab=73.36 E-value=56 Score=33.70 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=52.3
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccccc
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNI 511 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i 511 (700)
.-.|+|+|.+.|.- ...|+.+.+ .+|||||.. .+-++... .- .++ +....+
T Consensus 52 ~~~VLDlGcGtG~~----~~~l~~~~~----~~v~gvD~S------~~Ml~~a~--------~~-~~~----~~~d~~-- 102 (226)
T PRK05785 52 PKKVLDVAAGKGEL----SYHFKKVFK----YYVVALDYA------ENMLKMNL--------VA-DDK----VVGSFE-- 102 (226)
T ss_pred CCeEEEEcCCCCHH----HHHHHHhcC----CEEEEECCC------HHHHHHHH--------hc-cce----EEechh--
Confidence 45899999999943 334554432 489999963 23333321 11 111 222222
Q ss_pred CccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEE
Q 045051 512 QLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIH 563 (700)
Q Consensus 512 ~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~ 563 (700)
++....+.+=+|-|.|.|||+.| .+.+|+.+ |-++|.++++
T Consensus 103 ---~lp~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 103 ---ALPFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred ---hCCCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCceEEE
Confidence 33334455556667788888764 24566666 7789965444
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=73.02 E-value=8.1 Score=34.06 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=55.0
Q ss_pred EEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045051 434 HIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQL 513 (700)
Q Consensus 434 HIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~~ 513 (700)
+|+|+|.+.| .+...|+++ -|..+|||||.. .+.++.+.+++.+....-+ .+|.. ..+ .
T Consensus 4 ~vLDlGcG~G----~~~~~l~~~---~~~~~v~gvD~s------~~~~~~a~~~~~~~~~~~~--i~~~~--~d~-~--- 62 (112)
T PF12847_consen 4 RVLDLGCGTG----RLSIALARL---FPGARVVGVDIS------PEMLEIARERAAEEGLSDR--ITFVQ--GDA-E--- 62 (112)
T ss_dssp EEEEETTTTS----HHHHHHHHH---HTTSEEEEEESS------HHHHHHHHHHHHHTTTTTT--EEEEE--SCC-H---
T ss_pred EEEEEcCcCC----HHHHHHHhc---CCCCEEEEEeCC------HHHHHHHHHHHHhcCCCCC--eEEEE--Ccc-c---
Confidence 6899999999 333344431 134789999963 4556666666644333333 33332 222 0
Q ss_pred ccccc-CCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEEE
Q 045051 514 EDLKI-DREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIHG 564 (700)
Q Consensus 514 edL~i-~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~~ 564 (700)
..... .+=++++.+. +.++++.+. .-+..+|+.+ +.|+|.-.++.
T Consensus 63 ~~~~~~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 63 FDPDFLEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp GGTTTSSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCcccCCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEEE
Confidence 11111 1123444444 455655532 1245667765 68899766543
No 37
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=71.48 E-value=22 Score=38.11 Aligned_cols=108 Identities=15% Similarity=0.209 Sum_probs=59.6
Q ss_pred HHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEE
Q 045051 422 MILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEY 501 (700)
Q Consensus 422 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF 501 (700)
.|++.+.=+.-=||+|+|.+ |-.+...+|++.| .++|||.+. .+..+. ..+.++..|++=..
T Consensus 53 ~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS------~~Q~~~----a~~~~~~~gl~~~v 114 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLS------EEQAEY----ARERIREAGLEDRV 114 (273)
T ss_dssp HHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-------HHHHHH----HHHHHHCSTSSSTE
T ss_pred HHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECC------HHHHHH----HHHHHHhcCCCCce
Confidence 44555544555699999877 5588888998864 689999873 333433 33445566776333
Q ss_pred EeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEE
Q 045051 502 NTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIF 561 (700)
Q Consensus 502 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vf 561 (700)
..+...+.++.. +=+ +|-++-.+.|+..+ -...+++.| +.|+|.-.
T Consensus 115 ~v~~~D~~~~~~------~fD--~IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 115 EVRLQDYRDLPG------KFD--RIVSIEMFEHVGRK------NYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp EEEES-GGG---------S-S--EEEEESEGGGTCGG------GHHHHHHHHHHHSETTEE
T ss_pred EEEEeeccccCC------CCC--EEEEEechhhcChh------HHHHHHHHHHHhcCCCcE
Confidence 333333433322 112 33455667777543 246788888 77899654
No 38
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=70.17 E-value=1.5e+02 Score=32.41 Aligned_cols=140 Identities=12% Similarity=0.109 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHhcCCccchhhHhh-------------hHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCC
Q 045051 393 ASAAEVLQAYKVYVSSCPFNRMTFFMA-------------NRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGG 459 (700)
Q Consensus 393 ~s~~e~lkAy~lf~~~~Pf~k~a~f~A-------------NqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gG 459 (700)
.+..+...-|..+....||.+-.+-.- -+.|+..+..-+.-+|+|+|.+.|. +...++.+ |
T Consensus 71 ~~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~----~~~~la~~--g 144 (322)
T PRK15068 71 LSEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGY----HMWRMLGA--G 144 (322)
T ss_pred CCHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcH----HHHHHHHc--C
Confidence 345455556667777777766654331 1233334432233489999999993 22345544 3
Q ss_pred CCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCccccccCCCCeEEEEeecccccCCCCc
Q 045051 460 PPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDT 539 (700)
Q Consensus 460 PP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Des 539 (700)
|- +++|||.. ...+... +...+++.. ....+|.. ..++++. . .+-+=+|-|+..|+|+.
T Consensus 145 ~~--~V~GiD~S------~~~l~q~-~a~~~~~~~-~~~i~~~~--~d~e~lp-----~-~~~FD~V~s~~vl~H~~--- 203 (322)
T PRK15068 145 AK--LVVGIDPS------QLFLCQF-EAVRKLLGN-DQRAHLLP--LGIEQLP-----A-LKAFDTVFSMGVLYHRR--- 203 (322)
T ss_pred CC--EEEEEcCC------HHHHHHH-HHHHHhcCC-CCCeEEEe--CCHHHCC-----C-cCCcCEEEECChhhccC---
Confidence 32 49999942 1122111 112222211 12334432 2333332 2 22222344555677764
Q ss_pred cccCCcHHHHHHHHHhhCCcEEEE
Q 045051 540 VVINSPRDAVLELIKKINPDIFIH 563 (700)
Q Consensus 540 v~~~spRd~vL~~IR~L~P~Vfv~ 563 (700)
+|.+.+-+.-+.|+|.-.++
T Consensus 204 ----dp~~~L~~l~~~LkpGG~lv 223 (322)
T PRK15068 204 ----SPLDHLKQLKDQLVPGGELV 223 (322)
T ss_pred ----CHHHHHHHHHHhcCCCcEEE
Confidence 36666666668899975443
No 39
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=70.06 E-value=42 Score=36.93 Aligned_cols=142 Identities=16% Similarity=0.213 Sum_probs=84.5
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccc
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP-FEYNTIAQKWQN 510 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~ 510 (700)
...|||||.+.|..=..||++|..+ +. ..+-.+||.. .+.|+++.++|. .+ ..| .++++|....++
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS------~~~L~~a~~~L~--~~--~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVS------RSELQRTLAELP--LG--NFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECC------HHHHHHHHHhhh--hc--cCCCeEEEEEEecHHH
Confidence 3479999999999999999999732 22 3788999984 567899888887 12 245 777777643322
Q ss_pred c-C-ccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHh--hCC-cEEEEEe--------ecCCCCCCC-ch
Q 045051 511 I-Q-LEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKK--INP-DIFIHGV--------VNGTYNAPF-FL 576 (700)
Q Consensus 511 i-~-~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~--L~P-~Vfv~~e--------~ng~~nsp~-F~ 576 (700)
. . +..-.+...-.++.-.-..+.|+..+. ...+|+.|++ |+| +.|++|. ....||.+. ..
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~e------a~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvT 217 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPE------AAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVT 217 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHH------HHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchh
Confidence 1 1 001011111223332224566654321 2479999987 888 5566554 223466543 22
Q ss_pred HH-HHHHHhhhHHHhHh
Q 045051 577 PR-FREALFHFSTFFDM 592 (700)
Q Consensus 577 ~R-F~EAL~yYSAlFDs 592 (700)
.+ ..+.|.|--..++.
T Consensus 218 a~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 218 RRFVLNGLVHANEILGS 234 (319)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 33 35666666666553
No 40
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=69.37 E-value=91 Score=32.05 Aligned_cols=42 Identities=24% Similarity=0.483 Sum_probs=28.1
Q ss_pred HHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 421 RMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 421 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
+.+++.+.....-+|+|+|.+.|. +.+.|+.+ + -++||||..
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s 73 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLS 73 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECC
Confidence 344555544444579999999993 55666654 2 489999963
No 41
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=68.17 E-value=58 Score=37.07 Aligned_cols=156 Identities=18% Similarity=0.199 Sum_probs=87.2
Q ss_pred hhHhhhHHHHHhhhhcCeeEEEEcccccc-cchHHHHHHHh--------cCCCCCCeEEEeeecCCCCCCCChHHHHHHH
Q 045051 415 TFFMANRMILKLAEKATRLHIVDFGIGYG-FQWPCLIQRIS--------KRPGGPPKIRMTAIEFPQPGFKPAERVEETG 485 (700)
Q Consensus 415 a~f~ANqaIleA~~g~~~VHIIDfgI~~G-~QWp~Liq~La--------~R~gGPP~LRITgI~~pq~gfrpae~leeTG 485 (700)
+.+.||. +++.-.+|-|||.++++- .-=|..|- |+ -+...|++...-|.-.|+.. +...+.-+
T Consensus 90 t~~LaN~----~l~rG~~v~iiDaDvGQ~ei~pPg~IS-L~~~~s~~~~L~~l~~~~~~FvG~isP~~~--~~~~i~~v- 161 (398)
T COG1341 90 TTYLANK----LLARGRKVAIIDADVGQSEIGPPGFIS-LAFPESPVISLSELEPFTLYFVGSISPQGF--PGRYIAGV- 161 (398)
T ss_pred HHHHHHH----HhhcCceEEEEeCCCCCcccCCCceEE-eecccCCCCCHHHcCccceEEEeccCCCCC--hHHHHHHH-
Confidence 4445774 444355699999998852 11122211 11 02235777788777777753 34444444
Q ss_pred HHHHHHHhhcCCcEEEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEEe
Q 045051 486 HRLKCYSQRFGVPFEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGV 565 (700)
Q Consensus 486 rRL~~~A~~~gVpFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~e 565 (700)
.||.++|++. -++++||+.=. +.--...+--...|+..+|+.++..+
T Consensus 162 ~rL~~~a~~~-------------------------~~~ilIdT~GW--------i~G~~g~elk~~li~~ikP~~Ii~l~ 208 (398)
T COG1341 162 ARLVDLAKKE-------------------------ADFILIDTDGW--------IKGWGGLELKRALIDAIKPDLIIALE 208 (398)
T ss_pred HHHHHHhhcc-------------------------CCEEEEcCCCc--------eeCchHHHHHHHHHhhcCCCEEEEec
Confidence 5788888754 13446664322 21113456777889999999998776
Q ss_pred ecCCCCCCCchHHHHHHHhhhHHHhHhhhhcCCCCCHHHHHHHHHHHhhccch
Q 045051 566 VNGTYNAPFFLPRFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMN 618 (700)
Q Consensus 566 ~ng~~nsp~F~~RF~EAL~yYSAlFDsLdat~pr~~~eR~~iEr~~~greI~N 618 (700)
.+.. ..++-+=.+...| ....|+..++.-.||..+=.+-+.|.+.+
T Consensus 209 ~~~~---~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 209 RANE---LSPLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFEG 254 (398)
T ss_pred cccc---cchhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhccC
Confidence 6532 3333333344443 34445666777777665543445555544
No 42
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=66.53 E-value=69 Score=31.77 Aligned_cols=30 Identities=27% Similarity=0.472 Sum_probs=21.6
Q ss_pred eEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 045051 433 LHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEF 470 (700)
Q Consensus 433 VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~ 470 (700)
-+|+|+|.+.|. ++..|+.+. ..+++||+.
T Consensus 15 ~~iLDiGcG~G~----~~~~l~~~~----~~~~~giD~ 44 (194)
T TIGR02081 15 SRVLDLGCGDGE----LLALLRDEK----QVRGYGIEI 44 (194)
T ss_pred CEEEEeCCCCCH----HHHHHHhcc----CCcEEEEeC
Confidence 379999999994 556676543 235699985
No 43
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=66.28 E-value=1.5e+02 Score=29.90 Aligned_cols=102 Identities=21% Similarity=0.409 Sum_probs=52.1
Q ss_pred hcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccc
Q 045051 429 KATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKW 508 (700)
Q Consensus 429 g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~ 508 (700)
..+..+|+|+|.+.|. +...|+.+ + .++|+|+.. ...++.+.+++. ..++..+|... .+
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~-~----~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~--~~ 104 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL-G----ADVTGIDAS------EENIEVARLHAL----ESGLKIDYRQT--TA 104 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc-C----CeEEEEcCC------HHHHHHHHHHHH----HcCCceEEEec--CH
Confidence 3456789999999884 33344443 2 469999863 234554444432 23444455432 22
Q ss_pred cccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHH-HHhhCCcEEEE
Q 045051 509 QNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLEL-IKKINPDIFIH 563 (700)
Q Consensus 509 E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~-IR~L~P~Vfv~ 563 (700)
+.+... ..+-+=+|-|.+-++|+.+ +. .+|+. .+.|+|.-.++
T Consensus 105 ~~~~~~----~~~~fD~Ii~~~~l~~~~~-------~~-~~l~~~~~~L~~gG~l~ 148 (233)
T PRK05134 105 EELAAE----HPGQFDVVTCMEMLEHVPD-------PA-SFVRACAKLVKPGGLVF 148 (233)
T ss_pred HHhhhh----cCCCccEEEEhhHhhccCC-------HH-HHHHHHHHHcCCCcEEE
Confidence 222100 1122223344455666653 33 45554 47788875443
No 44
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=65.66 E-value=25 Score=37.29 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=38.8
Q ss_pred hcCCccchhh-HhhhHHHHHhhh----hcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 407 SSCPFNRMTF-FMANRMILKLAE----KATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 407 ~~~Pf~k~a~-f~ANqaIleA~~----g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
...|=.+++. |..++.|++.+- -...-+|+|+|.|.| .+...|+.+ ++ ++||||..
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G----~lt~~L~~~--~~---~v~avE~d 73 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLG----ALTEPLLER--AA---KVTAVEID 73 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCcc----HHHHHHHHh--CC---cEEEEECC
Confidence 4567677775 666766665443 345568999999998 466667766 23 89999974
No 45
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=64.22 E-value=59 Score=32.76 Aligned_cols=45 Identities=22% Similarity=0.357 Sum_probs=30.1
Q ss_pred hhhHHHHHhhh--hcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 418 MANRMILKLAE--KATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 418 ~ANqaIleA~~--g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
.....+++.+. ..+.-+|+|+|.+.|. +...|+.+. .+|||||..
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s 86 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDIS 86 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECC
Confidence 34445566655 2356799999999994 555666541 389999963
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=60.19 E-value=1.2e+02 Score=33.06 Aligned_cols=110 Identities=12% Similarity=0.264 Sum_probs=66.5
Q ss_pred HhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEee
Q 045051 425 KLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTI 504 (700)
Q Consensus 425 eA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~I 504 (700)
+-+.=+.--||.|+|.+ |=.|+...|++-| +++|||.+. .+..+...+| ++..|++=..+.+
T Consensus 66 ~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS------~~Q~~~~~~r----~~~~gl~~~v~v~ 127 (283)
T COG2230 66 EKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLS------EEQLAYAEKR----IAARGLEDNVEVR 127 (283)
T ss_pred HhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCC------HHHHHHHHHH----HHHcCCCcccEEE
Confidence 33333566799999766 6689999998864 899999974 3334433333 4445666334444
Q ss_pred cccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHH-hhCCcE--EEEEee
Q 045051 505 AQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIK-KINPDI--FIHGVV 566 (700)
Q Consensus 505 a~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR-~L~P~V--fv~~e~ 566 (700)
.+.|.++... +=.|-++=.+.|+..+. -+.+++.++ -|+|+- +.|++.
T Consensus 128 l~d~rd~~e~--------fDrIvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 128 LQDYRDFEEP--------FDRIVSVGMFEHVGKEN------YDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred eccccccccc--------cceeeehhhHHHhCccc------HHHHHHHHHhhcCCCceEEEEEec
Confidence 5555555432 22334556777777543 367888884 566653 445554
No 47
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=59.84 E-value=1.4e+02 Score=33.21 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=50.7
Q ss_pred CeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc
Q 045051 431 TRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQN 510 (700)
Q Consensus 431 ~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~ 510 (700)
...+|+|+|.+.|.-.. .|+++.++ .++|+||.. .+.++.+.++.. .-++.| +....++
T Consensus 113 ~~~~VLDLGcGtG~~~l----~La~~~~~---~~VtgVD~S------~~mL~~A~~k~~----~~~i~~----i~gD~e~ 171 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTL----GIVKHVDA---KNVTILDQS------PHQLAKAKQKEP----LKECKI----IEGDAED 171 (340)
T ss_pred CCCEEEEEecCCcHHHH----HHHHHCCC---CEEEEEECC------HHHHHHHHHhhh----ccCCeE----EeccHHh
Confidence 45799999999996333 33433211 589999963 233444433321 123332 3333333
Q ss_pred cCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEE
Q 045051 511 IQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIH 563 (700)
Q Consensus 511 i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~ 563 (700)
+...+ ..=++++.+ ..|+++.| + +.+|+.+ |-|+|.-.++
T Consensus 172 lp~~~---~sFDvVIs~--~~L~~~~d-------~-~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 172 LPFPT---DYADRYVSA--GSIEYWPD-------P-QRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred CCCCC---CceeEEEEc--ChhhhCCC-------H-HHHHHHHHHhcCCCcEEE
Confidence 32211 112344443 55667664 2 3455554 7789976543
No 48
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=59.10 E-value=74 Score=31.75 Aligned_cols=98 Identities=15% Similarity=0.284 Sum_probs=50.5
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccccc
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNI 511 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i 511 (700)
.-+|+|+|.+.|. ....+ +.+ .|..++||||.. .+.++.+ .+.+++.|++ .+..+...++++
T Consensus 43 ~~~vLDiGcGtG~-~s~~l---a~~---~~~~~V~~iD~s------~~~~~~a----~~~~~~~~~~-~i~~i~~d~~~~ 104 (181)
T TIGR00138 43 GKKVIDIGSGAGF-PGIPL---AIA---RPELKLTLLESN------HKKVAFL----REVKAELGLN-NVEIVNGRAEDF 104 (181)
T ss_pred CCeEEEecCCCCc-cHHHH---HHH---CCCCeEEEEeCc------HHHHHHH----HHHHHHhCCC-CeEEEecchhhc
Confidence 4589999999993 22222 211 134689999963 2233333 2344556664 233344444443
Q ss_pred CccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEEEe
Q 045051 512 QLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIHGV 565 (700)
Q Consensus 512 ~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~~e 565 (700)
.. -.+=++++.|+ ++++ +.++..+ +-|+|.-.++..
T Consensus 105 ~~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 105 QH----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cc----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 21 11224565554 3322 2455554 558998766543
No 49
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=58.32 E-value=83 Score=32.01 Aligned_cols=100 Identities=12% Similarity=0.125 Sum_probs=52.2
Q ss_pred eEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccC
Q 045051 433 LHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQ 512 (700)
Q Consensus 433 VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~ 512 (700)
-.|+|+|.+.|..-..| +.+- |..++||||.. .+.++.+.+++. ++.+. . ....
T Consensus 45 ~~VLDiGCG~G~~~~~L----~~~~---~~~~v~giDiS------~~~l~~A~~~~~------~~~~~--~--~d~~--- 98 (204)
T TIGR03587 45 ASILELGANIGMNLAAL----KRLL---PFKHIYGVEIN------EYAVEKAKAYLP------NINII--Q--GSLF--- 98 (204)
T ss_pred CcEEEEecCCCHHHHHH----HHhC---CCCeEEEEECC------HHHHHHHHhhCC------CCcEE--E--eecc---
Confidence 35999999999544444 3321 23689999963 344554433221 23221 1 1111
Q ss_pred ccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEEeec
Q 045051 513 LEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVN 567 (700)
Q Consensus 513 ~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~e~n 567 (700)
+ ....+.+=+|-|...|+|+..+ -+..+++.+.+..=+.+++++..
T Consensus 99 --~-~~~~~sfD~V~~~~vL~hl~p~------~~~~~l~el~r~~~~~v~i~e~~ 144 (204)
T TIGR03587 99 --D-PFKDNFFDLVLTKGVLIHINPD------NLPTAYRELYRCSNRYILIAEYY 144 (204)
T ss_pred --C-CCCCCCEEEEEECChhhhCCHH------HHHHHHHHHHhhcCcEEEEEEee
Confidence 1 1122233334466667787432 23567777766665667766653
No 50
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=54.07 E-value=1.2e+02 Score=34.17 Aligned_cols=106 Identities=16% Similarity=0.339 Sum_probs=54.5
Q ss_pred HHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEE
Q 045051 422 MILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEY 501 (700)
Q Consensus 422 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF 501 (700)
.|++.+.-...-+|+|+|.+.|. +...|+++.| .+||||+.. .+.++.+.++. + ++..+|
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS------~~~l~~A~~~~----~--~l~v~~ 217 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTIS------AEQQKLAQERC----A--GLPVEI 217 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCC------HHHHHHHHHHh----c--cCeEEE
Confidence 34444433344589999998773 4555665543 489999863 34455444443 1 333333
Q ss_pred EeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEE
Q 045051 502 NTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIH 563 (700)
Q Consensus 502 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~ 563 (700)
. ...+.++ . ..=++| -+...++|+.++ ..+.+++.+ +-|+|.-.++
T Consensus 218 ~--~~D~~~l-----~-~~fD~I--vs~~~~ehvg~~------~~~~~l~~i~r~LkpGG~lv 264 (383)
T PRK11705 218 R--LQDYRDL-----N-GQFDRI--VSVGMFEHVGPK------NYRTYFEVVRRCLKPDGLFL 264 (383)
T ss_pred E--ECchhhc-----C-CCCCEE--EEeCchhhCChH------HHHHHHHHHHHHcCCCcEEE
Confidence 2 1222222 1 111233 234456676543 123555554 7789976543
No 51
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=52.93 E-value=1.1e+02 Score=30.58 Aligned_cols=100 Identities=22% Similarity=0.382 Sum_probs=51.7
Q ss_pred cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCC--cEEEEeeccc
Q 045051 430 ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGV--PFEYNTIAQK 507 (700)
Q Consensus 430 ~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gV--pFeF~~Ia~~ 507 (700)
.+..+|+|+|.+.|. +...|+.+ + .++||||.. ...++.+.+++. ..++ ...|... .
T Consensus 62 ~~~~~vLDvGcG~G~----~~~~l~~~--~---~~v~~~D~s------~~~i~~a~~~~~----~~~~~~~i~~~~~--d 120 (230)
T PRK07580 62 LTGLRILDAGCGVGS----LSIPLARR--G---AKVVASDIS------PQMVEEARERAP----EAGLAGNITFEVG--D 120 (230)
T ss_pred CCCCEEEEEeCCCCH----HHHHHHHc--C---CEEEEEECC------HHHHHHHHHHHH----hcCCccCcEEEEc--C
Confidence 345689999999994 33345543 2 349999973 334555544433 2333 2334321 1
Q ss_pred ccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEE
Q 045051 508 WQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHG 564 (700)
Q Consensus 508 ~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~ 564 (700)
++.. .+.+=+|-|...|+|+.++. ...+++.+.++.+..+++.
T Consensus 121 ~~~~--------~~~fD~v~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 121 LESL--------LGRFDTVVCLDVLIHYPQED------AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred chhc--------cCCcCEEEEcchhhcCCHHH------HHHHHHHHHhhcCCeEEEE
Confidence 2211 11122233445567766542 3567777766655544443
No 52
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=52.56 E-value=1.1e+02 Score=34.62 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=58.0
Q ss_pred EEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccc-ccccC
Q 045051 434 HIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQK-WQNIQ 512 (700)
Q Consensus 434 HIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~-~E~i~ 512 (700)
+|+|+|.|.|. +--.|+.+. |..+||+||.. ...++-+.+++......-...++|. ... ++.
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S------~~Av~~A~~N~~~n~~~~~~~v~~~--~~D~l~~-- 293 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDES------PMAVASSRLNVETNMPEALDRCEFM--INNALSG-- 293 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHHcCcccCceEEEE--Ecccccc--
Confidence 79999999995 333455542 56899999974 3456655555543321100123442 211 111
Q ss_pred ccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHH-HHHhhCCcEEEEEee
Q 045051 513 LEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLE-LIKKINPDIFIHGVV 566 (700)
Q Consensus 513 ~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~-~IR~L~P~Vfv~~e~ 566 (700)
+.-..=++|+.|-.|+-.+-..+.+ ...++. .-+.|+|.-.+..+.
T Consensus 294 ---~~~~~fDlIlsNPPfh~~~~~~~~i-----a~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 294 ---VEPFRFNAVLCNPPFHQQHALTDNV-----AWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ---CCCCCEEEEEECcCcccCccCCHHH-----HHHHHHHHHHhcccCCEEEEEE
Confidence 1111235788887886544322211 123444 446889987665554
No 53
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=52.25 E-value=1.3e+02 Score=33.12 Aligned_cols=108 Identities=12% Similarity=0.060 Sum_probs=53.0
Q ss_pred HHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEE
Q 045051 423 ILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYN 502 (700)
Q Consensus 423 IleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~ 502 (700)
|+..+...+.-+|+|+|.+.|. ++..++.+ |+ -+++|||... ..+.+ -+...+++... ....+.
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDpS~------~ml~q-~~~~~~~~~~~-~~v~~~ 176 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDPTV------LFLCQ-FEAVRKLLDND-KRAILE 176 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcCCH------HHHHH-HHHHHHHhccC-CCeEEE
Confidence 4444433334589999999995 33444433 33 2789998531 22222 12222222211 122222
Q ss_pred eecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEE
Q 045051 503 TIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIF 561 (700)
Q Consensus 503 ~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vf 561 (700)
...++++... +.+=+|-|+..|+|+. +|.+.+-..-|.|+|.-.
T Consensus 177 --~~~ie~lp~~------~~FD~V~s~gvL~H~~-------dp~~~L~el~r~LkpGG~ 220 (314)
T TIGR00452 177 --PLGIEQLHEL------YAFDTVFSMGVLYHRK-------SPLEHLKQLKHQLVIKGE 220 (314)
T ss_pred --ECCHHHCCCC------CCcCEEEEcchhhccC-------CHHHHHHHHHHhcCCCCE
Confidence 2223333221 1222344555677765 365655556688999743
No 54
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=51.67 E-value=2.6e+02 Score=28.67 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=64.9
Q ss_pred HHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045051 421 RMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFE 500 (700)
Q Consensus 421 qaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFe 500 (700)
..|++|+.--+.-.++|+|.|.|. =--.||++ | ..+|++|.. ...+ .+|.+.|++-+++.+
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GR----NalyLA~~-G----~~VtAvD~s------~~al----~~l~~~a~~~~l~i~ 80 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGR----NALYLASQ-G----FDVTAVDIS------PVAL----EKLQRLAEEEGLDIR 80 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSH----HHHHHHHT-T-----EEEEEESS------HHHH----HHHHHHHHHTT-TEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcH----HHHHHHHC-C----CeEEEEECC------HHHH----HHHHHHHhhcCceeE
Confidence 346677766667789999999983 11235554 2 789999964 2233 357778888899966
Q ss_pred EEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHH-hhCCcEEE
Q 045051 501 YNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIK-KINPDIFI 562 (700)
Q Consensus 501 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR-~L~P~Vfv 562 (700)
.... ++.+..+. ++.=+|.+..-|++|..+. ++.+++.|+ .++|--+.
T Consensus 81 ~~~~-------Dl~~~~~~-~~yD~I~st~v~~fL~~~~------~~~i~~~m~~~~~pGG~~ 129 (192)
T PF03848_consen 81 TRVA-------DLNDFDFP-EEYDFIVSTVVFMFLQREL------RPQIIENMKAATKPGGYN 129 (192)
T ss_dssp EEE--------BGCCBS-T-TTEEEEEEESSGGGS-GGG------HHHHHHHHHHTEEEEEEE
T ss_pred EEEe-------cchhcccc-CCcCEEEEEEEeccCCHHH------HHHHHHHHHhhcCCcEEE
Confidence 5432 22333332 3445666777788887542 567787774 46886543
No 55
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=51.42 E-value=81 Score=34.87 Aligned_cols=137 Identities=20% Similarity=0.304 Sum_probs=73.4
Q ss_pred hhhHhhhHHHHHhhhh----cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHH
Q 045051 414 MTFFMANRMILKLAEK----ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLK 489 (700)
Q Consensus 414 ~a~f~ANqaIleA~~g----~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~ 489 (700)
|-+..-..-|-+.+.. ....+|+|+|.|.| -.|.+....+ + =++.|||+. .+.|+++-+|..
T Consensus 41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkG---GDL~Kw~~~~---i--~~~vg~Dis------~~si~ea~~Ry~ 106 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKG---GDLQKWQKAK---I--KHYVGIDIS------EESIEEARERYK 106 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTT---TTHHHHHHTT------SEEEEEES-------HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCc---hhHHHHHhcC---C--CEEEEEeCC------HHHHHHHHHHHH
Confidence 3344444455555542 27799999999998 3455554432 2 467888863 578999998885
Q ss_pred HHHhhc---CCcEEEEe--ec--ccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcE-
Q 045051 490 CYSQRF---GVPFEYNT--IA--QKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDI- 560 (700)
Q Consensus 490 ~~A~~~---gVpFeF~~--Ia--~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~V- 560 (700)
+.-+.- ...+.|.+ +. .-++.| .+.+......+=||+|.|.||+....- ... ..+|++| +.|+|--
T Consensus 107 ~~~~~~~~~~~~~~f~a~f~~~D~f~~~l-~~~~~~~~~~FDvVScQFalHY~Fese---~~a-r~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 107 QLKKRNNSKQYRFDFIAEFIAADCFSESL-REKLPPRSRKFDVVSCQFALHYAFESE---EKA-RQFLKNVSSLLKPGGY 181 (331)
T ss_dssp HHHTSTT-HTSEECCEEEEEESTTCCSHH-HCTSSSTTS-EEEEEEES-GGGGGSSH---HHH-HHHHHHHHHTEEEEEE
T ss_pred Hhccccccccccccchhheeccccccchh-hhhccccCCCcceeehHHHHHHhcCCH---HHH-HHHHHHHHHhcCCCCE
Confidence 554321 12233322 22 112111 111222235778999999999987421 122 3456555 8899965
Q ss_pred EEEEeecCC
Q 045051 561 FIHGVVNGT 569 (700)
Q Consensus 561 fv~~e~ng~ 569 (700)
||-+.++++
T Consensus 182 FIgT~~d~~ 190 (331)
T PF03291_consen 182 FIGTTPDSD 190 (331)
T ss_dssp EEEEEE-HH
T ss_pred EEEEecCHH
Confidence 454555543
No 56
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=49.73 E-value=2.1e+02 Score=29.32 Aligned_cols=106 Identities=9% Similarity=0.082 Sum_probs=57.7
Q ss_pred eEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccC
Q 045051 433 LHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQ 512 (700)
Q Consensus 433 VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~ 512 (700)
-.|+|+|.+.| ..-|.+|+.. . -+||+|+.. .+.++.+.+. ++..|+. ....+...+...-
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~---a--~~V~~vE~~------~~a~~~a~~N----l~~~~~~-~v~~~~~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRY---A--AGATLLEMD------RAVAQQLIKN----LATLKAG-NARVVNTNALSFL 115 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcC---C--CEEEEEECC------HHHHHHHHHH----HHHhCCC-cEEEEEchHHHHH
Confidence 47999999998 3334556532 2 389999863 2333333333 3334443 2222332222110
Q ss_pred ccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHh---hCCcEEEEEeecCCC
Q 045051 513 LEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKK---INPDIFIHGVVNGTY 570 (700)
Q Consensus 513 ~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~---L~P~Vfv~~e~ng~~ 570 (700)
.... .+=++|++|=.|+-. -...++..|.. +.|+-+|.++.+...
T Consensus 116 -~~~~-~~fDlV~~DPPy~~g-----------~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 116 -AQPG-TPHNVVFVDPPFRKG-----------LLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred -hhcC-CCceEEEECCCCCCC-----------hHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 0011 123678888776421 13568888877 689998888766543
No 57
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=47.38 E-value=54 Score=31.15 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=26.9
Q ss_pred hhcCeeEEEEcccccccchHHHHHHHhcCC-CCCCeEEEeeecCC
Q 045051 428 EKATRLHIVDFGIGYGFQWPCLIQRISKRP-GGPPKIRMTAIEFP 471 (700)
Q Consensus 428 ~g~~~VHIIDfgI~~G~QWp~Liq~La~R~-gGPP~LRITgI~~p 471 (700)
...+..+|||+|-|.|. |=+.|+..- .-.|.++|+|||..
T Consensus 22 ~~~~~~~vvD~GsG~Gy----Ls~~La~~l~~~~~~~~v~~iD~~ 62 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGY----LSRALAHLLCNSSPNLRVLGIDCN 62 (141)
T ss_pred ccCCCCEEEEeCCChhH----HHHHHHHHHHhcCCCCeEEEEECC
Confidence 34788999999999994 223333300 00278999999964
No 58
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=46.49 E-value=77 Score=31.65 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=23.1
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecC
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEF 470 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~ 470 (700)
.--|+|+|.+.| .++..|+.+. |...++||+.
T Consensus 17 ~~~ilDiGcG~G----~~~~~la~~~---p~~~v~gvD~ 48 (194)
T TIGR00091 17 APLHLEIGCGKG----RFLIDMAKQN---PDKNFLGIEI 48 (194)
T ss_pred CceEEEeCCCcc----HHHHHHHHhC---CCCCEEEEEe
Confidence 346999999998 3444555542 4578999996
No 59
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=46.26 E-value=1.9e+02 Score=30.19 Aligned_cols=99 Identities=17% Similarity=0.340 Sum_probs=50.5
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccc
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP-FEYNTIAQKWQN 510 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~ 510 (700)
.=+|+|+|.+.|. |..++ +... .+.-+|||||.. .+.++.+.++. +.+|++ .+| +...++.
T Consensus 78 g~~VLDiG~G~G~-~~~~~---a~~~--g~~~~v~gvD~s------~~~l~~A~~~~----~~~g~~~v~~--~~~d~~~ 139 (272)
T PRK11873 78 GETVLDLGSGGGF-DCFLA---ARRV--GPTGKVIGVDMT------PEMLAKARANA----RKAGYTNVEF--RLGEIEA 139 (272)
T ss_pred CCEEEEeCCCCCH-HHHHH---HHHh--CCCCEEEEECCC------HHHHHHHHHHH----HHcCCCCEEE--EEcchhh
Confidence 3489999999883 22222 2221 234589999963 23454444332 334543 232 2233433
Q ss_pred cCccccccCCC--CeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEE
Q 045051 511 IQLEDLKIDRE--EMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFI 562 (700)
Q Consensus 511 i~~edL~i~~d--E~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv 562 (700)
+. +..+ ++|+.||++ |+..| +...+=...|-|+|.-.+
T Consensus 140 l~-----~~~~~fD~Vi~~~v~--~~~~d-------~~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 140 LP-----VADNSVDVIISNCVI--NLSPD-------KERVFKEAFRVLKPGGRF 179 (272)
T ss_pred CC-----CCCCceeEEEEcCcc--cCCCC-------HHHHHHHHHHHcCCCcEE
Confidence 32 2222 345556554 55553 233444556889997543
No 60
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=45.84 E-value=1e+02 Score=29.97 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=28.4
Q ss_pred HHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 422 MILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 422 aIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
.|++.+.-...-+|+|+|.|.|. |...|+.+ + -++|+|+..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~ 44 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEID 44 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECC
Confidence 45565543444589999999984 55566666 2 389999974
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=45.77 E-value=2.9e+02 Score=27.87 Aligned_cols=98 Identities=12% Similarity=0.259 Sum_probs=52.9
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccc
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP-FEYNTIAQKWQN 510 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~ 510 (700)
.-.|+|+|.+.|. .++ .++.+ .|..++||||.. .+.++.+. +.++..|++ ++|. ....++
T Consensus 46 g~~VLDiGcGtG~--~al--~la~~---~~~~~V~giD~s------~~~l~~A~----~~~~~~~l~~i~~~--~~d~~~ 106 (187)
T PRK00107 46 GERVLDVGSGAGF--PGI--PLAIA---RPELKVTLVDSL------GKKIAFLR----EVAAELGLKNVTVV--HGRAEE 106 (187)
T ss_pred CCeEEEEcCCCCH--HHH--HHHHH---CCCCeEEEEeCc------HHHHHHHH----HHHHHcCCCCEEEE--eccHhh
Confidence 4579999999993 222 22222 134699999863 23344333 334455664 4443 333333
Q ss_pred cCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHH-HHhhCCcEEEEEee
Q 045051 511 IQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLEL-IKKINPDIFIHGVV 566 (700)
Q Consensus 511 i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~-IR~L~P~Vfv~~e~ 566 (700)
+.. -.+-++++.|+. . +.+.+++. .+.|+|.-.++.+.
T Consensus 107 ~~~----~~~fDlV~~~~~-------------~-~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 107 FGQ----EEKFDVVTSRAV-------------A-SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred CCC----CCCccEEEEccc-------------c-CHHHHHHHHHHhcCCCeEEEEEe
Confidence 322 123456666531 1 23456665 48999988766553
No 62
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=44.00 E-value=70 Score=34.68 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=27.9
Q ss_pred HhhhHHHHHhh----hhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 417 FMANRMILKLA----EKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 417 f~ANqaIleA~----~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
|..|..|++.+ .-...=.|+|+|.|.|. |-..|+.+. -++++|+..
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~----LT~~Ll~~~-----~~V~avEiD 67 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGN----LTEKLLQLA-----KKVIAIEID 67 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHH----HHHHHHHhC-----CcEEEEECC
Confidence 44555544433 32334479999999885 444555442 269999873
No 63
>PRK06922 hypothetical protein; Provisional
Probab=40.45 E-value=1.6e+02 Score=35.92 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=56.0
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccccc
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNI 511 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i 511 (700)
.-.|+|+|.|.|. ++..|+.+. |..++||||.+ ...++.+.+++ ...+..+++ +.....++
T Consensus 419 g~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS------~~MLe~Ararl----~~~g~~ie~--I~gDa~dL 479 (677)
T PRK06922 419 GDTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS------ENVIDTLKKKK----QNEGRSWNV--IKGDAINL 479 (677)
T ss_pred CCEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHh----hhcCCCeEE--EEcchHhC
Confidence 3589999999993 445566542 46899999975 23455554433 223444443 22221111
Q ss_pred CccccccCCCCeEEEEeecccccCCC----Ccc--ccCCcHHHHHHHHHhhCCcEEE
Q 045051 512 QLEDLKIDREEMTVVNCLYRMRNLPD----DTV--VINSPRDAVLELIKKINPDIFI 562 (700)
Q Consensus 512 ~~edL~i~~dE~LaVN~~~~L~~L~D----esv--~~~spRd~vL~~IR~L~P~Vfv 562 (700)
. + .+.++.+=+|-+.+-+|++.+ +.. ....+...+-+..|.|+|.-.+
T Consensus 480 p--~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 480 S--S-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred c--c-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEE
Confidence 1 0 133344444445566676642 110 0112233333445899997543
No 64
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=40.34 E-value=1.6e+02 Score=29.46 Aligned_cols=99 Identities=16% Similarity=0.329 Sum_probs=51.7
Q ss_pred EEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045051 434 HIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQL 513 (700)
Q Consensus 434 HIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~~ 513 (700)
+|+|+|.+.|. ++..++++. |..++|||+.. .+.++...+++ +..|+.-....+....+....
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s------~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~ 64 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTIS------PEQAEVGRERI----RALGLQGRIRIFYRDSAKDPF 64 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHHH----HhcCCCcceEEEecccccCCC
Confidence 68999998884 344555543 34689999973 34444444443 333554333333222211111
Q ss_pred cccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEE
Q 045051 514 EDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIH 563 (700)
Q Consensus 514 edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~ 563 (700)
. ..=++ |-+...++|+.+ ...+|+.+ +.|+|.-.++
T Consensus 65 ~----~~fD~--I~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 65 P----DTYDL--VFGFEVIHHIKD--------KMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred C----CCCCE--eehHHHHHhCCC--------HHHHHHHHHHHcCCCCEEE
Confidence 1 11122 334555677653 24666666 6689976544
No 65
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=37.79 E-value=7.2e+02 Score=29.06 Aligned_cols=149 Identities=14% Similarity=0.135 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHH-cC--C-HHHHHHHHHHHhhcC------CCCCChhhHHHHHHHHHHHHhhcCC------CCCcccc-
Q 045051 325 LWTLLTLCAQAVA-NY--D-QRTANDFLKQIRQHS------SPFGDGIQRLAHYFANGLEVRLAGT------RTPVQTH- 387 (700)
Q Consensus 325 L~~LLi~CAqAVa-~~--d-~~~A~~lL~~Irq~s------Sp~GD~~QRLA~yFa~AL~aRL~gt------gs~~y~~- 387 (700)
+..+|..+.+.+. +| + ...|.-||..+-... ...-.-..-....|.+.++.|..|. |...+-.
T Consensus 5 ~~~~l~~~~~~l~~~g~~~~~~~a~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~ 84 (506)
T PRK01544 5 IKQILSDATDKLNKIGISSPQLEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSR 84 (506)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCc
Confidence 3455555555553 22 2 445777777665431 1111123334568999999999874 3332211
Q ss_pred --------ccCCCCCHHHHHH-HHHHHHhc--CCccchhhHhhhHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcC
Q 045051 388 --------LASSRASAAEVLQ-AYKVYVSS--CPFNRMTFFMANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKR 456 (700)
Q Consensus 388 --------l~s~~~s~~e~lk-Ay~lf~~~--~Pf~k~a~f~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R 456 (700)
|. +|+....+.. |.+.+... .|....-..++++--+......+...|+|+|.+.| ++.-.|+.+
T Consensus 85 ~f~V~~~VLI-PRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG----~iai~la~~ 159 (506)
T PRK01544 85 EFIVNKHVLI-PRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSG----CIAISLLCE 159 (506)
T ss_pred EEEeCCCccc-CCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchh----HHHHHHHHH
Confidence 22 3444433332 32222110 01111111111111111111223357999999998 333345443
Q ss_pred CCCCCeEEEeeecCCCCCCCChHHHHHHHHH
Q 045051 457 PGGPPKIRMTAIEFPQPGFKPAERVEETGHR 487 (700)
Q Consensus 457 ~gGPP~LRITgI~~pq~gfrpae~leeTGrR 487 (700)
- |..++|+||.. .+.++.+.++
T Consensus 160 ~---p~~~v~avDis------~~al~~A~~N 181 (506)
T PRK01544 160 L---PNANVIATDIS------LDAIEVAKSN 181 (506)
T ss_pred C---CCCeEEEEECC------HHHHHHHHHH
Confidence 2 34699999973 2445555444
No 66
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=37.34 E-value=90 Score=33.27 Aligned_cols=111 Identities=20% Similarity=0.341 Sum_probs=67.5
Q ss_pred hhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecc
Q 045051 427 AEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQ 506 (700)
Q Consensus 427 ~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~ 506 (700)
+.-+.--.|+|+|.+-|-+=- .|++|- |--.|||||.. .+-|+++.+||- ++.|+
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTe----lL~~Rw---P~A~i~GiDsS------~~Mla~Aa~rlp------~~~f~------ 80 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTE----LLARRW---PDAVITGIDSS------PAMLAKAAQRLP------DATFE------ 80 (257)
T ss_pred CCccccceeeecCCCCCHHHH----HHHHhC---CCCeEeeccCC------HHHHHHHHHhCC------CCcee------
Confidence 334556679999999996544 445453 44689999863 455666555443 33333
Q ss_pred cccccCcccccc-CCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEEeecCCCCCCC
Q 045051 507 KWQNIQLEDLKI-DREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVNGTYNAPF 574 (700)
Q Consensus 507 ~~E~i~~edL~i-~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~e~ng~~nsp~ 574 (700)
.-++.+++- .+-.+|.-|.+|+. |+|-. +.+-+++-.|.|--++-+-.-.++..|.
T Consensus 81 ---~aDl~~w~p~~~~dllfaNAvlqW--lpdH~-------~ll~rL~~~L~Pgg~LAVQmPdN~deps 137 (257)
T COG4106 81 ---EADLRTWKPEQPTDLLFANAVLQW--LPDHP-------ELLPRLVSQLAPGGVLAVQMPDNLDEPS 137 (257)
T ss_pred ---cccHhhcCCCCccchhhhhhhhhh--ccccH-------HHHHHHHHhhCCCceEEEECCCccCchh
Confidence 223333333 22346677776654 66532 4667788999998887666666666664
No 67
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=35.04 E-value=1.5e+02 Score=31.22 Aligned_cols=37 Identities=14% Similarity=0.368 Sum_probs=23.2
Q ss_pred CeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 431 TRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 431 ~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
..-+|+|+|.+.|.--..|.+.+... ....++|||..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s 121 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDIS 121 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCC
Confidence 44679999999996433443333211 12579999973
No 68
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=32.33 E-value=2.8e+02 Score=28.31 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=41.6
Q ss_pred CeeEE-EEccc---ccccch---HHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhc----CCcE
Q 045051 431 TRLHI-VDFGI---GYGFQW---PCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRF----GVPF 499 (700)
Q Consensus 431 ~~VHI-IDfgI---~~G~QW---p~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~----gVpF 499 (700)
-+||| ||=|. .+|+.+ +.+++.+.. -|.|+|.||-.--+.....+...+.-+++.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36888 89884 579854 555555543 356899998542111111233455566666666654 5777
Q ss_pred EEEeec
Q 045051 500 EYNTIA 505 (700)
Q Consensus 500 eF~~Ia 505 (700)
++--+-
T Consensus 193 ~~is~G 198 (222)
T cd00635 193 KELSMG 198 (222)
T ss_pred CEEECc
Confidence 765553
No 69
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=31.86 E-value=90 Score=31.27 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=45.7
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHhhcC
Q 045051 325 LWTLLTLCA-QAVANYDQRTANDFLKQIRQHSSPFGDGIQRLAHYFANGLEVRLAG 379 (700)
Q Consensus 325 L~~LLi~CA-qAVa~~d~~~A~~lL~~Irq~sSp~GD~~QRLA~yFa~AL~aRL~g 379 (700)
+.++|+.|. ..+..++...|..+|..|.++..|..+.-.|+...|.+||-.=+.|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 555666666 6677889999999999999999888888899999999999765544
No 70
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=31.85 E-value=4.2e+02 Score=29.41 Aligned_cols=106 Identities=21% Similarity=0.326 Sum_probs=57.9
Q ss_pred EEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045051 434 HIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQL 513 (700)
Q Consensus 434 HIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~~ 513 (700)
+|+|+|.|.|. +-..|+.+ -|..++|+||.. ...++.+.+++.. .++..++.. ... +
T Consensus 199 ~VLDlGCG~G~----ls~~la~~---~p~~~v~~vDis------~~Al~~A~~nl~~----n~l~~~~~~--~D~--~-- 255 (342)
T PRK09489 199 KVLDVGCGAGV----LSAVLARH---SPKIRLTLSDVS------AAALESSRATLAA----NGLEGEVFA--SNV--F-- 255 (342)
T ss_pred eEEEeccCcCH----HHHHHHHh---CCCCEEEEEECC------HHHHHHHHHHHHH----cCCCCEEEE--ccc--c--
Confidence 69999999996 44445544 245789999974 3456666555543 355555432 111 0
Q ss_pred cccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEEeec
Q 045051 514 EDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVVN 567 (700)
Q Consensus 514 edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~e~n 567 (700)
+.+ -.+=++|+.|-.| |.-.+.. .....+.+-...+.|+|.-.+..+.|
T Consensus 256 ~~~-~~~fDlIvsNPPF--H~g~~~~--~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 256 SDI-KGRFDMIISNPPF--HDGIQTS--LDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccc-CCCccEEEECCCc--cCCcccc--HHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 111 1234677777655 3322211 11123333344577999876655554
No 71
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=31.56 E-value=89 Score=33.96 Aligned_cols=100 Identities=24% Similarity=0.456 Sum_probs=59.1
Q ss_pred EEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccc--ccccC
Q 045051 435 IVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQK--WQNIQ 512 (700)
Q Consensus 435 IIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~--~E~i~ 512 (700)
|+|+|.+-|. |=+-|| |.| --|||||.. .+.|+.+... +.++.+ .=.+|+-+ .|..+
T Consensus 93 ilDvGCGgGL----LSepLA-rlg----a~V~GID~s------~~~V~vA~~h-----~~~dP~-~~~~~~y~l~~~~~~ 151 (282)
T KOG1270|consen 93 ILDVGCGGGL----LSEPLA-RLG----AQVTGIDAS------DDMVEVANEH-----KKMDPV-LEGAIAYRLEYEDTD 151 (282)
T ss_pred EEEeccCccc----cchhhH-hhC----CeeEeeccc------HHHHHHHHHh-----hhcCch-hccccceeeehhhcc
Confidence 9999999883 223343 333 578999963 3445554333 122222 22223222 23444
Q ss_pred ccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCc--EEEEEe
Q 045051 513 LEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPD--IFIHGV 565 (700)
Q Consensus 513 ~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~--Vfv~~e 565 (700)
+|++. +..=||-|+-.++|..| |.+-.-..++.++|. +||-++
T Consensus 152 ~E~~~---~~fDaVvcsevleHV~d-------p~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 152 VEGLT---GKFDAVVCSEVLEHVKD-------PQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred hhhcc---cccceeeeHHHHHHHhC-------HHHHHHHHHHHhCCCCceEeeeh
Confidence 44443 34668889999999865 566666688999996 565444
No 72
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=31.10 E-value=1.9e+02 Score=30.29 Aligned_cols=46 Identities=22% Similarity=0.403 Sum_probs=30.1
Q ss_pred HhhhHHHHHhhhh----cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 417 FMANRMILKLAEK----ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 417 f~ANqaIleA~~g----~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
|..++.|++.+.. .+.=+|+|+|.|.|. |...|+.+ + .++|||+..
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~-~----~~v~~vEid 60 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGA----LTDELAKR-A----KKVYAIELD 60 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCH----HHHHHHHh-C----CEEEEEECC
Confidence 4455555554432 344579999999994 55666666 2 279999974
No 73
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=29.27 E-value=5.4e+02 Score=25.87 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=23.4
Q ss_pred CeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 431 TRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 431 ~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
..-.|+|+|.+.|.-...| +.+ .|..+|||||..
T Consensus 40 ~~~~VLDiGcGtG~~~~~l----a~~---~p~~~v~gVD~s 73 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEM----AKA---NPDINFIGIEVH 73 (202)
T ss_pred CCCeEEEEccCCCHHHHHH----HHH---CCCccEEEEEec
Confidence 4567999999999544443 333 144689999963
No 74
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=29.13 E-value=73 Score=37.14 Aligned_cols=68 Identities=21% Similarity=0.357 Sum_probs=48.4
Q ss_pred cccccCCCCccccCCcHHHHHHHHHhhCCcEEEE---Eee-----cCCCCCCCchHHHHHHHhhhHHHhHhhhhcCCCC
Q 045051 530 YRMRNLPDDTVVINSPRDAVLELIKKINPDIFIH---GVV-----NGTYNAPFFLPRFREALFHFSTFFDMFESTVPRE 600 (700)
Q Consensus 530 ~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~---~e~-----ng~~nsp~F~~RF~EAL~yYSAlFDsLdat~pr~ 600 (700)
-|.|++..+.+. .|-.+|+.+|+.+|++=|. ++. +++...|..-..+...++.|+.+.|-.+...+.+
T Consensus 77 SR~~~~~~~~~~---~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~yy~~yg~~i~~~~~l~dk~~~~~~~e 152 (497)
T PF13552_consen 77 SRIHHLSLEEAL---ERLERLRELKARNPNLPIYAFSTIMRTPPYSSSDEEPDYYADYGRKIFRYSQLLDKEEGLSEEE 152 (497)
T ss_pred hcCCCCCHHHHH---HHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhcchhh
Confidence 477887655432 4678999999999985443 222 2445567788899999999999999988433333
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=29.11 E-value=1.5e+02 Score=26.07 Aligned_cols=32 Identities=28% Similarity=0.245 Sum_probs=21.7
Q ss_pred eEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 433 LHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 433 VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
=+|+|+|.+.|.. ...|+.+. |..++|+||..
T Consensus 21 ~~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 21 DVLWDIGAGSGSI----TIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred CEEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCC
Confidence 3899999999832 33344432 23789999963
No 76
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=28.62 E-value=7.5e+02 Score=26.48 Aligned_cols=123 Identities=16% Similarity=0.253 Sum_probs=68.8
Q ss_pred HhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCC--CeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEE
Q 045051 425 KLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGP--PKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYN 502 (700)
Q Consensus 425 eA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGP--P~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~ 502 (700)
..+....++-+...|++-|--.+ ==| |-.|||+||+ ++.+++.... .+|+. .|.+|-
T Consensus 70 ~~~gk~~K~~vLEvgcGtG~Nfk----------fy~~~p~~svt~lDp-------n~~mee~~~k--s~~E~--k~~~~~ 128 (252)
T KOG4300|consen 70 YFLGKSGKGDVLEVGCGTGANFK----------FYPWKPINSVTCLDP-------NEKMEEIADK--SAAEK--KPLQVE 128 (252)
T ss_pred HHhcccCccceEEecccCCCCcc----------cccCCCCceEEEeCC-------cHHHHHHHHH--HHhhc--cCcceE
Confidence 34445678889999999882211 113 7799999984 4566666433 23333 555544
Q ss_pred -eecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEEEeecCCCCCCCchHHHH
Q 045051 503 -TIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIHGVVNGTYNAPFFLPRFR 580 (700)
Q Consensus 503 -~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~~e~ng~~nsp~F~~RF~ 580 (700)
-|.+..|++. .+..+-+=+|-|.|-|-..- +|+ ..|+.+ |-|+|+-.++-+..+.-- -.|..|+.
T Consensus 129 ~fvva~ge~l~----~l~d~s~DtVV~TlvLCSve-------~~~-k~L~e~~rlLRpgG~iifiEHva~~-y~~~n~i~ 195 (252)
T KOG4300|consen 129 RFVVADGENLP----QLADGSYDTVVCTLVLCSVE-------DPV-KQLNEVRRLLRPGGRIIFIEHVAGE-YGFWNRIL 195 (252)
T ss_pred EEEeechhcCc----ccccCCeeeEEEEEEEeccC-------CHH-HHHHHHHHhcCCCcEEEEEeccccc-chHHHHHH
Confidence 3334445443 12233344555777665443 455 566666 558998776655544311 12456655
Q ss_pred H
Q 045051 581 E 581 (700)
Q Consensus 581 E 581 (700)
.
T Consensus 196 q 196 (252)
T KOG4300|consen 196 Q 196 (252)
T ss_pred H
Confidence 4
No 77
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=28.20 E-value=6.5e+02 Score=25.96 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=22.0
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
.-.|+|.|.|.| .-+..||.+ | ..+||||..
T Consensus 38 ~~rvL~~gCG~G----~da~~LA~~-G----~~V~avD~s 68 (218)
T PRK13255 38 GSRVLVPLCGKS----LDMLWLAEQ-G----HEVLGVELS 68 (218)
T ss_pred CCeEEEeCCCCh----HhHHHHHhC-C----CeEEEEccC
Confidence 457899999988 233446654 2 689999974
No 78
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=28.04 E-value=2.9e+02 Score=31.60 Aligned_cols=58 Identities=21% Similarity=0.380 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCCCC--eEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccccc
Q 045051 447 PCLIQRISKRPGGPP--KIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNI 511 (700)
Q Consensus 447 p~Liq~La~R~gGPP--~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i 511 (700)
|.||+.|+.+...-+ +|.+--|+- .++++.++.-..++++..|.+++|..-...-+.+
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did~-------~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al 73 (419)
T cd05296 14 PELIEGLIRRYEELPVTELVLVDIDE-------EEKLEIVGALAKRMVKKAGLPIKVHLTTDRREAL 73 (419)
T ss_pred HHHHHHHHhccccCCCCEEEEecCCh-------HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHh
Confidence 689999998644333 455555541 4688888888899999999998887654333333
No 79
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=27.16 E-value=2.6e+02 Score=27.26 Aligned_cols=122 Identities=19% Similarity=0.319 Sum_probs=63.2
Q ss_pred hhhHHHHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCC
Q 045051 418 MANRMILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGV 497 (700)
Q Consensus 418 ~ANqaIleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gV 497 (700)
.+...+++.+...+.=+|+|+|.+.|. +=-.|+.+ -|..+||++|.. ...++-+.+. ++..++
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~----i~~~la~~---~~~~~v~~vDi~------~~a~~~a~~n----~~~n~~ 80 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGV----ISLALAKR---GPDAKVTAVDIN------PDALELAKRN----AERNGL 80 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSH----HHHHHHHT---STCEEEEEEESB------HHHHHHHHHH----HHHTTC
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHH----HHHHHHHh---CCCCEEEEEcCC------HHHHHHHHHH----HHhcCc
Confidence 355677888877777789999999993 22233433 356889999963 3444444333 445566
Q ss_pred cEEEEeeccc-ccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEEee
Q 045051 498 PFEYNTIAQK-WQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVV 566 (700)
Q Consensus 498 pFeF~~Ia~~-~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~e~ 566 (700)
.- .+.+... ++.+. -.+=++++.|-.+ +.-.++.. +.-++-+-..-+.|+|.-.+..+.
T Consensus 81 ~~-v~~~~~d~~~~~~-----~~~fD~Iv~NPP~--~~~~~~~~--~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 81 EN-VEVVQSDLFEALP-----DGKFDLIVSNPPF--HAGGDDGL--DLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TT-EEEEESSTTTTCC-----TTCEEEEEE---S--BTTSHCHH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc-ccccccccccccc-----ccceeEEEEccch--hcccccch--hhHHHHHHHHHHhccCCCEEEEEe
Confidence 52 3333322 22222 2233577777552 22222110 011233444557888877553333
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=26.81 E-value=2e+02 Score=29.10 Aligned_cols=79 Identities=23% Similarity=0.438 Sum_probs=41.8
Q ss_pred CeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc
Q 045051 431 TRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQN 510 (700)
Q Consensus 431 ~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~ 510 (700)
...+|+|+|.+.| .+...++.+. |..++||||.. ...++.+.+ .++..|++ ..+.+...+.+
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~~------~~~~~~a~~----~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---PDARVTAVDIS------PEALAVARK----NAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEECC------HHHHHHHHH----HHHHcCCC-eEEEEECchhc
Confidence 3468999999999 3344444431 45699999963 233443333 33445665 22223333321
Q ss_pred cCccccccCCCCeEEEEeecc
Q 045051 511 IQLEDLKIDREEMTVVNCLYR 531 (700)
Q Consensus 511 i~~edL~i~~dE~LaVN~~~~ 531 (700)
.+.-.+-++|+.|-.|.
T Consensus 149 ----~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 149 ----PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred ----cCcCCceeEEEECCCCC
Confidence 11112335777776654
No 81
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=26.56 E-value=90 Score=34.90 Aligned_cols=159 Identities=23% Similarity=0.267 Sum_probs=86.1
Q ss_pred hHHHHHhhhhcC-eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc
Q 045051 420 NRMILKLAEKAT-RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP 498 (700)
Q Consensus 420 NqaIleA~~g~~-~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp 498 (700)
-..|++...|-+ .--.||-|-+-| .++..|.. -.|+++++-.++|. +.++...+. .||.
T Consensus 165 ~~~il~~~~Gf~~v~~avDvGgGiG----~v~k~ll~---~fp~ik~infdlp~--------v~~~a~~~~-----~gV~ 224 (342)
T KOG3178|consen 165 MKKILEVYTGFKGVNVAVDVGGGIG----RVLKNLLS---KYPHIKGINFDLPF--------VLAAAPYLA-----PGVE 224 (342)
T ss_pred HHhhhhhhcccccCceEEEcCCcHh----HHHHHHHH---hCCCCceeecCHHH--------HHhhhhhhc-----CCcc
Confidence 345666666633 345699998877 44454444 25777777777642 434333221 2443
Q ss_pred EEEEeecccccccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEEEeecCCCCCCCchH
Q 045051 499 FEYNTIAQKWQNIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIHGVVNGTYNAPFFLP 577 (700)
Q Consensus 499 FeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~~e~ng~~nsp~F~~ 577 (700)
+-|.-. ..+ +-+++ +|=+.+-|||+.||-. -.+|++. +.+.|+-.|+...+- .|.
T Consensus 225 ~v~gdm--------fq~--~P~~d--aI~mkWiLhdwtDedc------vkiLknC~~sL~~~GkIiv~E~V---~p~--- 280 (342)
T KOG3178|consen 225 HVAGDM--------FQD--TPKGD--AIWMKWILHDWTDEDC------VKILKNCKKSLPPGGKIIVVENV---TPE--- 280 (342)
T ss_pred eecccc--------ccc--CCCcC--eEEEEeecccCChHHH------HHHHHHHHHhCCCCCEEEEEecc---CCC---
Confidence 332211 111 33445 4445678999999854 2688887 567776655544331 111
Q ss_pred HHHHHHhhhHHHhHhhhhcCCCCCHHHHHHHHHHHhhccchhhhcc-CCcccccccchhHHHHHHHhCCCccc
Q 045051 578 RFREALFHFSTFFDMFESTVPREDQGRMIFEREIYGKDAMNVIACE-GIERVERPETYKQWQARNLRAGFKQL 649 (700)
Q Consensus 578 RF~EAL~yYSAlFDsLdat~pr~~~eR~~iEr~~~greI~NvVAcE-G~~RvER~Ety~qWq~R~~rAGF~~l 649 (700)
...||-+++.+-|+-+. + =.+=|+ |-+|+ .++||.-+..+||...
T Consensus 281 ---------e~~~dd~~s~v~~~~d~--------l-----m~~~~~~Gkert-----~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 281 ---------EDKFDDIDSSVTRDMDL--------L-----MLTQTSGGKERT-----LKEFQALLPEEGFPVC 326 (342)
T ss_pred ---------CCCccccccceeehhHH--------H-----HHHHhccceecc-----HHHHHhcchhhcCcee
Confidence 01224444444332221 1 112366 55554 5799999999999754
No 82
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=26.45 E-value=6.5e+02 Score=25.00 Aligned_cols=100 Identities=19% Similarity=0.369 Sum_probs=50.0
Q ss_pred CeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCC-cEEEEeeccccc
Q 045051 431 TRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGV-PFEYNTIAQKWQ 509 (700)
Q Consensus 431 ~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gV-pFeF~~Ia~~~E 509 (700)
....|+|+|.+.|. +...|+.. + .++|+|+.. ...++...+++. ..++ .+.|... .++
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~~--d~~ 103 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDAS------EENIEVAKLHAK----KDPLLKIEYRCT--SVE 103 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCC------HHHHHHHHHHHH----HcCCCceEEEeC--CHH
Confidence 36789999999883 33344432 2 249999863 234555444433 2344 3444322 222
Q ss_pred ccCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHH-HhhCCcEEEE
Q 045051 510 NIQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELI-KKINPDIFIH 563 (700)
Q Consensus 510 ~i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~I-R~L~P~Vfv~ 563 (700)
++.... -.+-++++. ...++|..+ |. .+|+.+ +.|+|.-+++
T Consensus 104 ~~~~~~--~~~~D~i~~--~~~l~~~~~-------~~-~~l~~~~~~L~~gG~l~ 146 (224)
T TIGR01983 104 DLAEKG--AKSFDVVTC--MEVLEHVPD-------PQ-AFIRACAQLLKPGGILF 146 (224)
T ss_pred HhhcCC--CCCccEEEe--hhHHHhCCC-------HH-HHHHHHHHhcCCCcEEE
Confidence 221111 112234443 344555542 33 455554 7789986554
No 83
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=25.68 E-value=3.6e+02 Score=21.71 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=21.0
Q ss_pred EEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 434 HIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 434 HIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
+|+|+|.+.|. +...++. ++..++++++..
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~ 30 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDIS 30 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCC
Confidence 47899999883 4444544 345799999964
No 84
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=24.83 E-value=82 Score=33.77 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=18.4
Q ss_pred hhcCeeEEEEcccccccchHHHHHHHhcCC
Q 045051 428 EKATRLHIVDFGIGYGFQWPCLIQRISKRP 457 (700)
Q Consensus 428 ~g~~~VHIIDfgI~~G~QWp~Liq~La~R~ 457 (700)
.|++.|||||+ +.+ ++ .+|+.+.+..
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~ 75 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAY 75 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhC
Confidence 48999999999 444 66 5666666543
No 85
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=24.74 E-value=6.3e+02 Score=28.74 Aligned_cols=100 Identities=12% Similarity=0.157 Sum_probs=53.5
Q ss_pred cCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccc
Q 045051 430 ATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP-FEYNTIAQKW 508 (700)
Q Consensus 430 ~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~ 508 (700)
...-+|+|+|.+.|. +--.||.+- -+++|||.. .+.++.+.+++ +..|+. .+|. ...+
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s------~~al~~A~~n~----~~~~~~~v~~~--~~d~ 354 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGV------EAMVERARENA----RRNGLDNVTFY--HANL 354 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCC------HHHHHHHHHHH----HHcCCCceEEE--EeCh
Confidence 344689999999994 333456542 389999963 34555554433 333443 3332 2233
Q ss_pred cccCcccccc--CCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEE
Q 045051 509 QNIQLEDLKI--DREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHG 564 (700)
Q Consensus 509 E~i~~edL~i--~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~ 564 (700)
++.- ..+.. ..-++|++|-.+. -.+.++..|.+++|+-+|..
T Consensus 355 ~~~l-~~~~~~~~~fD~Vi~dPPr~-------------g~~~~~~~l~~~~~~~ivyv 398 (443)
T PRK13168 355 EEDF-TDQPWALGGFDKVLLDPPRA-------------GAAEVMQALAKLGPKRIVYV 398 (443)
T ss_pred HHhh-hhhhhhcCCCCEEEECcCCc-------------ChHHHHHHHHhcCCCeEEEE
Confidence 2211 11101 1124555542221 12467789999999887754
No 86
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=24.27 E-value=6.4e+02 Score=27.26 Aligned_cols=98 Identities=14% Similarity=0.240 Sum_probs=53.7
Q ss_pred eeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccc
Q 045051 432 RLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP-FEYNTIAQKWQN 510 (700)
Q Consensus 432 ~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~ 510 (700)
.-+|+|+|.+.|. +--.||.+ + -+++|||.. ...++.+.+. |+..|++ .+|.. ...++
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s------~~av~~A~~n----~~~~~l~~v~~~~--~D~~~ 232 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEIS------AEAIACAKQS----AAELGLTNVQFQA--LDSTQ 232 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCC------HHHHHHHHHH----HHHcCCCceEEEE--cCHHH
Confidence 4689999999994 33445543 2 389999963 3445544333 3445664 45533 22222
Q ss_pred cCccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEE
Q 045051 511 IQLEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHG 564 (700)
Q Consensus 511 i~~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~ 564 (700)
+... . ...-++|++|-... .--+.++..|.+++|+.+|.+
T Consensus 233 ~~~~-~-~~~~D~Vv~dPPr~------------G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 233 FATA-Q-GEVPDLVLVNPPRR------------GIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred HHHh-c-CCCCeEEEECCCCC------------CccHHHHHHHHHcCCCeEEEE
Confidence 2111 1 01224666662210 011467889999999877654
No 87
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=23.49 E-value=3.1e+02 Score=25.01 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=26.3
Q ss_pred CCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEEee
Q 045051 520 REEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGVV 566 (700)
Q Consensus 520 ~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~e~ 566 (700)
.+.+-+....|..| |....+...++.++|+-+|=++.
T Consensus 71 ~~~~~~~~VPYSeH----------SSf~EL~~Fv~~l~P~~IiPtV~ 107 (110)
T PF07522_consen 71 RGNVRIYRVPYSEH----------SSFSELKEFVSFLKPKKIIPTVN 107 (110)
T ss_pred CCCceEEEEecccC----------CCHHHHHHHHHhcCCcEEEcccc
Confidence 34555566666655 45678999999999998875543
No 88
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=23.47 E-value=1.3e+02 Score=30.99 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=34.4
Q ss_pred HhhhhcCeeEEEEcccccc---cchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHH
Q 045051 425 KLAEKATRLHIVDFGIGYG---FQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCY 491 (700)
Q Consensus 425 eA~~g~~~VHIIDfgI~~G---~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~ 491 (700)
-+++=.+.=|++|+|-+-| .+|. ++ .|+.|+++|+- ..++++-|.+++.+|
T Consensus 28 s~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~------~~~a~~~~~~N~~~f 81 (187)
T COG2242 28 SKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIER------DEEALELIERNAARF 81 (187)
T ss_pred HhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEec------CHHHHHHHHHHHHHh
Confidence 3444444559999999987 4665 21 47899999984 456677776665544
No 89
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=23.15 E-value=7.2e+02 Score=27.69 Aligned_cols=97 Identities=15% Similarity=0.228 Sum_probs=52.4
Q ss_pred EEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccccC
Q 045051 434 HIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVP-FEYNTIAQKWQNIQ 512 (700)
Q Consensus 434 HIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVp-FeF~~Ia~~~E~i~ 512 (700)
+|+|++.|.| .+--.||.+ + -+++||+.. ...++.+.+++ +..|+. .+| +....++..
T Consensus 236 ~vLDL~cG~G----~~~l~la~~-~----~~v~~vE~~------~~av~~a~~N~----~~~~~~~~~~--~~~d~~~~~ 294 (374)
T TIGR02085 236 QMWDLFCGVG----GFGLHCAGP-D----TQLTGIEIE------SEAIACAQQSA----QMLGLDNLSF--AALDSAKFA 294 (374)
T ss_pred EEEEccCCcc----HHHHHHhhc-C----CeEEEEECC------HHHHHHHHHHH----HHcCCCcEEE--EECCHHHHH
Confidence 7999999988 233344433 2 379999963 34455444433 344553 344 233332221
Q ss_pred ccccccCCCCeEEEEeecccccCCCCccccCCcHHHHHHHHHhhCCcEEEEEe
Q 045051 513 LEDLKIDREEMTVVNCLYRMRNLPDDTVVINSPRDAVLELIKKINPDIFIHGV 565 (700)
Q Consensus 513 ~edL~i~~dE~LaVN~~~~L~~L~Desv~~~spRd~vL~~IR~L~P~Vfv~~e 565 (700)
. .+. ..-++|++|=.++ . .-..++..|.+++|+-+|.+.
T Consensus 295 ~-~~~-~~~D~vi~DPPr~--G----------~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 295 T-AQM-SAPELVLVNPPRR--G----------IGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred H-hcC-CCCCEEEECCCCC--C----------CcHHHHHHHHhcCCCeEEEEE
Confidence 1 111 1235666663321 1 114788999999998776554
No 90
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=23.13 E-value=7.5e+02 Score=28.39 Aligned_cols=58 Identities=21% Similarity=0.339 Sum_probs=42.1
Q ss_pred HHHHHHHhcCCCCCC--eEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccC
Q 045051 447 PCLIQRISKRPGGPP--KIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIAQKWQNIQ 512 (700)
Q Consensus 447 p~Liq~La~R~gGPP--~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia~~~E~i~ 512 (700)
|.||+.|..++..-| +|.+--|+ .++++.++....++++..|.+++|..-...=|.++
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did--------~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~ 73 (425)
T cd05197 14 PELVSGLLKTPEELPISEVTLYDID--------EERLDIILTIAKRYVEEVGADIKFEKTMDLEDAII 73 (425)
T ss_pred HHHHHHHHcChhhCCCCEEEEEcCC--------HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhC
Confidence 789999999985444 45555554 46788888888889999999988876654434443
No 91
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=22.96 E-value=6.6e+02 Score=28.81 Aligned_cols=90 Identities=21% Similarity=0.249 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcC---CccchhhHhhhHHHHHhhhhcCe---eEE-------EEc-----ccccccchHHHHHHHhcCCC
Q 045051 397 EVLQAYKVYVSSC---PFNRMTFFMANRMILKLAEKATR---LHI-------VDF-----GIGYGFQWPCLIQRISKRPG 458 (700)
Q Consensus 397 e~lkAy~lf~~~~---Pf~k~a~f~ANqaIleA~~g~~~---VHI-------IDf-----gI~~G~QWp~Liq~La~R~g 458 (700)
.++.|+-.-+++. .+...+.-+|.-+|-+.+.++.- =|. -.| --+++|-|..||-.++.|.+
T Consensus 178 Hl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~ 257 (388)
T COG2942 178 HLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRG 257 (388)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCcccCCCCCchHHHHHHHHHHHHHHhc
Confidence 3444444444444 57777888888888887765431 111 122 23577889999999998743
Q ss_pred CCCeEEEeeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeec
Q 045051 459 GPPKIRMTAIEFPQPGFKPAERVEETGHRLKCYSQRFGVPFEYNTIA 505 (700)
Q Consensus 459 GPP~LRITgI~~pq~gfrpae~leeTGrRL~~~A~~~gVpFeF~~Ia 505 (700)
...+.++.++|..-|...|+.-++..+.
T Consensus 258 -------------------~~~l~~~A~~lf~~a~~~g~d~~~gg~~ 285 (388)
T COG2942 258 -------------------RAWLIEAARRLFDIAVADGWDPERGGAY 285 (388)
T ss_pred -------------------hhHHHHHHHHHHHHHHHhccCcccCeEE
Confidence 2346677889999898888887776543
No 92
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=22.52 E-value=5.3e+02 Score=26.80 Aligned_cols=40 Identities=30% Similarity=0.436 Sum_probs=27.0
Q ss_pred HHHhhhhcCeeEEEEcccccccchHHHHHHHhcCCCCCCeEEEeeecCC
Q 045051 423 ILKLAEKATRLHIVDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFP 471 (700)
Q Consensus 423 IleA~~g~~~VHIIDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~p 471 (700)
|++++...+.-.|+|+|.|.|. |...|+.+. + ++++|+..
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d 60 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEID 60 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECC
Confidence 3444443455689999999995 666666663 2 39999863
No 93
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=21.87 E-value=3.4e+02 Score=29.81 Aligned_cols=72 Identities=15% Similarity=0.297 Sum_probs=38.4
Q ss_pred CeeEE-EEcccc-cccc---hHHHHHHHhcCCCCCCeEE-EeeecCCCCCC-CCh-HHHHHHHHHHHHHHhh---cCCcE
Q 045051 431 TRLHI-VDFGIG-YGFQ---WPCLIQRISKRPGGPPKIR-MTAIEFPQPGF-KPA-ERVEETGHRLKCYSQR---FGVPF 499 (700)
Q Consensus 431 ~~VHI-IDfgI~-~G~Q---Wp~Liq~La~R~gGPP~LR-ITgI~~pq~gf-rpa-e~leeTGrRL~~~A~~---~gVpF 499 (700)
-+||| ||-|++ +|+. +..+++.+... |.|+ |.||..--+.. .+. +..++.-+++.++++. .|+++
T Consensus 120 ~~V~l~VdtGm~R~Gi~~~e~~~~~~~i~~~----~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~ 195 (367)
T TIGR00492 120 LKVHLKIDTGMNRLGVKPDEAALFVQKLRQL----KKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQNIEP 195 (367)
T ss_pred eEEEEEeeCCCCCCCCChHHHHHHHHHHHhC----CCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCC
Confidence 46898 898865 6884 55555555432 4699 99995421111 111 1233333444444433 36666
Q ss_pred EEEeecc
Q 045051 500 EYNTIAQ 506 (700)
Q Consensus 500 eF~~Ia~ 506 (700)
++..++.
T Consensus 196 ~~~~~~n 202 (367)
T TIGR00492 196 PFRHIAN 202 (367)
T ss_pred CcEEccC
Confidence 6655543
No 94
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=21.85 E-value=1.1e+03 Score=25.94 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=24.3
Q ss_pred eeEE-EEcccc-cccch---HHHHHHHhcCCCCCCeEEEeee
Q 045051 432 RLHI-VDFGIG-YGFQW---PCLIQRISKRPGGPPKIRMTAI 468 (700)
Q Consensus 432 ~VHI-IDfgI~-~G~QW---p~Liq~La~R~gGPP~LRITgI 468 (700)
+||| ||-|++ .|+.+ ..+++.+.. -|.|+|.||
T Consensus 118 ~vhlkvDtGm~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi 155 (353)
T cd06815 118 KIILMVDLGDLREGVLPEDLLDFVEEILK----LPGIELVGI 155 (353)
T ss_pred ceEEEEecCCCccccCHHHHHHHHHHHhC----CCCcEEEec
Confidence 6898 899987 69864 455555533 356999999
No 95
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=21.43 E-value=4.8e+02 Score=24.22 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhcCCcEE--EEeecccccccCcccc-----ccCCCC--eEEEEeecccccCCCCccccCCcHHHHHH
Q 045051 481 VEETGHRLKCYSQRFGVPFE--YNTIAQKWQNIQLEDL-----KIDREE--MTVVNCLYRMRNLPDDTVVINSPRDAVLE 551 (700)
Q Consensus 481 leeTGrRL~~~A~~~gVpFe--F~~Ia~~~E~i~~edL-----~i~~dE--~LaVN~~~~L~~L~Desv~~~spRd~vL~ 551 (700)
++.--+.|.+||+..|.++. |.-...+-....-..| .+..|+ +|+|--+-||.+-..+ .-.++.
T Consensus 17 ~~~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~-------~~~~~~ 89 (148)
T smart00857 17 LERQLEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRD-------LLALLE 89 (148)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCcHHH-------HHHHHH
Confidence 44445678899999998752 3222111111111122 256677 8888777776553322 135777
Q ss_pred HHHhhCCcEEEE
Q 045051 552 LIKKINPDIFIH 563 (700)
Q Consensus 552 ~IR~L~P~Vfv~ 563 (700)
.++..+=.|++.
T Consensus 90 ~l~~~gi~l~~~ 101 (148)
T smart00857 90 LLEKKGVRLVSV 101 (148)
T ss_pred HHHHCCCEEEEC
Confidence 888887555543
No 96
>PRK03646 dadX alanine racemase; Reviewed
Probab=20.86 E-value=1.2e+02 Score=33.55 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=33.3
Q ss_pred CeeEE-EEcccc-cccc---hHHHHHHHhcCCCCCCeEEEeeecCCCCCCCChHHHHHHHHHHHHH
Q 045051 431 TRLHI-VDFGIG-YGFQ---WPCLIQRISKRPGGPPKIRMTAIEFPQPGFKPAERVEETGHRLKCY 491 (700)
Q Consensus 431 ~~VHI-IDfgI~-~G~Q---Wp~Liq~La~R~gGPP~LRITgI~~pq~gfrpae~leeTGrRL~~~ 491 (700)
-+||| ||-|++ .|+. |+.+++.+.. .|.|+|+||-. .|..++....|.+.+.+|
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~s---H~a~ad~~~~~~~Q~~~F 175 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMS---HFARADHPDGISEAMARI 175 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEc---CCCCCCCCCHHHHHHHHH
Confidence 46899 999987 5885 5666666644 35699999954 233232222254555555
No 97
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=20.50 E-value=31 Score=29.93 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=19.7
Q ss_pred EEcccccccchHHHHHHHhcCCCCCCeEEEeeecCCCC
Q 045051 436 VDFGIGYGFQWPCLIQRISKRPGGPPKIRMTAIEFPQP 473 (700)
Q Consensus 436 IDfgI~~G~QWp~Liq~La~R~gGPP~LRITgI~~pq~ 473 (700)
+|+|.+.|.==..|++.+ |..++||+|....
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~ 31 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPS 31 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSS
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHH
Confidence 477888775444444444 7899999998543
No 98
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=20.27 E-value=2.5e+02 Score=35.12 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=29.3
Q ss_pred cccccCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 045051 319 KSEVVDLWTLLTLCAQAVANYDQRTANDFLKQIRQ 353 (700)
Q Consensus 319 ~~e~vdL~~LLi~CAqAVa~~d~~~A~~lL~~Irq 353 (700)
.+-..+|++||-++-..-+.||...|.+||..|=.
T Consensus 133 ~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIk 167 (895)
T KOG2076|consen 133 SKLAPELRQLLGEANNLFARGDLEEAEEILMEVIK 167 (895)
T ss_pred cccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44566799999999999999999999999986533
No 99
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=20.15 E-value=1.1e+02 Score=33.08 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=20.4
Q ss_pred hhcCeeEEEEcccccccchHHHHHHHhc
Q 045051 428 EKATRLHIVDFGIGYGFQWPCLIQRISK 455 (700)
Q Consensus 428 ~g~~~VHIIDfgI~~G~QWp~Liq~La~ 455 (700)
.|.+.|||||++-+.+-+ -.+|+++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 489999999998755556 445666765
No 100
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.14 E-value=9.9e+02 Score=27.60 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHhhcCC----CCC-ChhhHHHHHHHHHHHHhhcC
Q 045051 340 DQRTANDFLKQIRQHSS----PFG-DGIQRLAHYFANGLEVRLAG 379 (700)
Q Consensus 340 d~~~A~~lL~~Irq~sS----p~G-D~~QRLA~yFa~AL~aRL~g 379 (700)
+...|.+++.+|+..+. +.+ ++.|.+.....+.|...+.+
T Consensus 40 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~~ 84 (437)
T PRK00771 40 NVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLGE 84 (437)
T ss_pred CHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhCC
Confidence 56777778777765421 222 34566666777777665543
No 101
>PRK07004 replicative DNA helicase; Provisional
Probab=20.11 E-value=2.3e+02 Score=32.64 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHhhcCCcEE
Q 045051 478 AERVEETGHRLKCYSQRFGVPFE 500 (700)
Q Consensus 478 ae~leeTGrRL~~~A~~~gVpFe 500 (700)
...+.++-+.|..+|++++||+=
T Consensus 346 ~~ei~~Isr~LK~lAkel~ipVi 368 (460)
T PRK07004 346 ATEISEISRSLKSLAKELDVPVI 368 (460)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEE
Confidence 45688999999999999999964
Done!