BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045056
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 143/311 (45%), Gaps = 40/311 (12%)
Query: 2 EVEIISRECIKPSSPTPLHLKTYKFSLLDQFRNHIFAPRVLYYP---LINLSDASVIDHI 58
++E +S E I PSSPTP LK YK S LDQ P +L+YP NL A H+
Sbjct: 4 QMEKVSEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHL 63
Query: 59 VXXXXXXXXXXXXETLVRFYPLAGKMTENFSINCNDEGIYFVEARAKSPLNEF------L 112
+ L FYPLAG++ N S++CND G+ FVEAR ++ L++ L
Sbjct: 64 --------KQSLSKVLTHFYPLAGRINVNSSVDCNDSGVPFVEARVQAQLSQAIQNVVEL 115
Query: 113 NKPDPSLTHKFFP---VEGSESLTGRIAGAHVAKVQITSFPCGGLVICSCFSHMFGDGTS 169
K D L +P +E +E + V+I+ F CGG I SH D S
Sbjct: 116 EKLDQYLPSAAYPGGKIEVNEDVP--------LAVKISFFECGGTAIGVNLSHKIADVLS 167
Query: 170 FSLFMKSWAATARKSNTGAAVMCPNFD-ASILFPPNEAYPRELNWNSLFTRFFETGRFVM 228
+ F+ +W AT R ++ PNFD A+ FPP + P VM
Sbjct: 168 LATFLNAWTATCRGETE---IVLPNFDLAARHFPPVDNTPS--------PELVPDENVVM 216
Query: 229 RRFVFXXXXXXXXXXXXXXSSCVQNPTRVEVVSALLSKHIMATFKLKSGPHKPTLLTHVV 288
+RFVF +S +N +RV++V A + KH++ + K G ++ V
Sbjct: 217 KRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQAV 276
Query: 289 NLRPKARPPLP 299
NLR + PPLP
Sbjct: 277 NLRSRMNPPLP 287
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 1 MEVEIISRECIKPSSPTPLHLKTYKFSLLDQFRNHIFAPRVLYY---PLINLSDASVIDH 57
M++E+ ++P+ TP + S +D + P V +Y N DA V+
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKD 63
Query: 58 IVXXXXXXXXXXXXETLVRFYPLAGKMTEN----FSINCNDEGIYFVEARAKSPLNEFLN 113
+ LV FYP+AG++ + I CN EG+ FVEA + +++F +
Sbjct: 64 ALS-----------RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD 112
Query: 114 -KPDPSLTHKFFPVEGSESLTGRIAGAHVAKVQITSFPCGGLVICSCFSHMFGDGTSFSL 172
P L V+ S+ I+ + +Q+T F CGG+ + H DG S
Sbjct: 113 FAPTLELRRLIPAVDYSQG----ISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLH 168
Query: 173 FMKSWAATARKSNTGAAVMCPNF 195
F+ SW+ AR G V P F
Sbjct: 169 FINSWSDMAR----GLDVTLPPF 187
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 29/203 (14%)
Query: 1 MEVEIISRECIKPSSPTPLHLKTYKFSLLDQFRNHIFAPRVLYY---PLINLSDASVIDH 57
M++E+ ++P+ TP + S +D + P V +Y N DA V+
Sbjct: 3 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKD 60
Query: 58 IVXXXXXXXXXXXXETLVRFYPLAGKMTEN----FSINCNDEGIYFVEARAKSPLNEFLN 113
+ LV FYP+AG++ + I CN EG+ FVEA + +++F +
Sbjct: 61 ALS-----------RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD 109
Query: 114 -KPDPSLTHKFFPVEGSESLTGRIAGAHVAKVQITSFPCGGLVICSCFSHMFGDGTSFSL 172
P L V+ S+ I+ + +Q+T F CGG+ + H DG S
Sbjct: 110 FAPTLELRRLIPAVDYSQG----ISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLH 165
Query: 173 FMKSWAATARKSNTGAAVMCPNF 195
F+ SW+ AR G V P F
Sbjct: 166 FINSWSDMAR----GLDVTLPPF 184
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 86/203 (42%), Gaps = 29/203 (14%)
Query: 1 MEVEIISRECIKPSSPTPLHLKTYKFSLLDQFRNHIFAPRVLYY---PLINLSDASVIDH 57
M++E+ ++P+ TP + S +D + P V +Y N DA V+
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKD 63
Query: 58 IVXXXXXXXXXXXXETLVRFYPLAGKMTEN----FSINCNDEGIYFVEARAKSPLNEFLN 113
+ LV FYP+AG++ + I CN EG+ FVEA + +++F +
Sbjct: 64 ALS-----------RALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGD 112
Query: 114 -KPDPSLTHKFFPVEGSESLTGRIAGAHVAKVQITSFPCGGLVICSCFSHMFGDGTSFSL 172
P L V+ S+ I+ + +Q+T F GG+ + H DG S
Sbjct: 113 FAPTLELRRLIPAVDYSQG----ISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLH 168
Query: 173 FMKSWAATARKSNTGAAVMCPNF 195
F+ SW+ AR G V P F
Sbjct: 169 FINSWSDMAR----GLDVTLPPF 187
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 94/253 (37%), Gaps = 37/253 (14%)
Query: 73 TLVRFYPLAGKM------TENFSINCNDEG--IYFVEARAKSPLNEFLNKPDPSLTHKFF 124
TL FYP GK+ T+ I C EG + A LNE L P KF+
Sbjct: 72 TLKHFYPFVGKLVVYPAPTKKPEI-CYVEGDSVAVTFAECNLDLNE-LTGNHPRNCDKFY 129
Query: 125 ---PVEGSESLTGRIAGAHVAKVQITSFPCGGLVICSCFSHMFGDGTSFSLFMKSWAATA 181
P+ G + + VQ+T FP G+ I H GD ++ F+K+W + A
Sbjct: 130 DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIA 189
Query: 182 RKSNTGAAVMC----PNFDASILFPP-NEAYPRELNWNSLFTRFFET----------GRF 226
R N + + P +D I +P +EAY + S + F
Sbjct: 190 RSGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGPSDKLRATF 249
Query: 227 VMRRFVFXXXXXXXXXXXXXXSSCVQNPTRVEVVSALLSKHIMATFKLKSGPHKPTLLTH 286
++ R V Q PT V S ++ + + KS K L
Sbjct: 250 ILTRAVINQLKDRVL---------AQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGF 300
Query: 287 VVNLRPKARPPLP 299
++ R + +PP+P
Sbjct: 301 PIDRRARXKPPIP 313
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 73 TLVRFYPLAGKM------TENFSINCNDEG--IYFVEARAKSPLNEFLNKPDPSLTHKFF 124
TL FYP GK+ T+ I C EG + A LNE L P KF+
Sbjct: 72 TLKHFYPFVGKLVVYPAPTKKPEI-CYVEGDSVAVTFAECNLDLNE-LTGNHPRNCDKFY 129
Query: 125 ---PVEGSESLTGRIAGAHVAKVQITSFPCGGLVICSCFSHMFGDGTSFSLFMKSWAATA 181
P+ G + + VQ+T FP G+ I H GD ++ F+K+W + A
Sbjct: 130 DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIA 189
Query: 182 RKSNTGAAVMC----PNFDASILFPP-NEAY 207
R N + + P +D I +P +EAY
Sbjct: 190 RSGNNDESFLANGTRPLYDRIIKYPMLDEAY 220
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 139 AHVAKVQITSFPCGGLVICSCFSHMFGDGTSFSLFMKSWAATARKSNTG---AAVMCPNF 195
A V +Q+T FP G+ I H+ GDG + F+++WA + A P +
Sbjct: 142 APVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFY 201
Query: 196 DASILFPPN 204
D S++ PN
Sbjct: 202 DRSVIKDPN 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,167,679
Number of Sequences: 62578
Number of extensions: 293598
Number of successful extensions: 640
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 623
Number of HSP's gapped (non-prelim): 8
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)