Query 045057
Match_columns 231
No_of_seqs 127 out of 465
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 16:29:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iqu_A 14-3-3 protein sigma; s 100.0 1.7E-52 5.9E-57 369.6 10.0 187 6-193 16-213 (236)
2 3uzd_A 14-3-3 protein gamma; s 100.0 4.4E-52 1.5E-56 369.2 10.6 188 6-194 12-212 (248)
3 3ubw_A 14-3-3E, 14-3-3 protein 100.0 8.1E-52 2.8E-56 369.9 10.5 187 6-193 39-236 (261)
4 2br9_A 14-3-3E, 14-3-3 protein 100.0 4.3E-51 1.5E-55 359.8 10.3 187 5-192 12-209 (234)
5 1o9d_A 14-3-3-like protein C; 100.0 2.7E-50 9.3E-55 359.6 10.8 187 6-193 16-215 (260)
6 2npm_A 14-3-3 domain containin 100.0 4E-50 1.4E-54 358.7 11.4 185 6-192 36-234 (260)
7 2o8p_A 14-3-3 domain containin 100.0 9.8E-50 3.4E-54 350.5 13.1 174 6-188 14-200 (227)
8 3efz_A 14-3-3 protein; 14-3-3, 100.0 7.1E-50 2.4E-54 358.5 8.8 184 7-192 35-233 (268)
9 3lf9_A 4E10_D0_1IS1A_001_C (T1 67.7 9.5 0.00033 30.6 5.5 85 16-103 12-103 (121)
10 1lyp_A CAP18; lipopolysacchari 57.5 21 0.0007 22.1 4.4 27 75-101 4-30 (32)
11 2kvs_A Uncharacterized protein 55.0 10 0.00034 28.4 3.3 61 123-185 8-68 (80)
12 1eh1_A Ribosome recycling fact 46.9 28 0.00095 29.3 5.2 73 30-103 104-176 (185)
13 4gfq_A Ribosome-recycling fact 43.1 17 0.00059 31.3 3.3 73 30-103 127-199 (209)
14 1dd5_A Ribosome recycling fact 37.7 26 0.0009 29.5 3.6 73 30-103 103-175 (185)
15 2crb_A Nuclear receptor bindin 37.3 1E+02 0.0036 23.7 6.6 70 2-87 16-85 (97)
16 4g26_A Pentatricopeptide repea 36.2 61 0.0021 29.9 6.2 61 3-64 107-169 (501)
17 1ise_A Ribosome recycling fact 35.8 28 0.00095 29.3 3.5 73 30-103 103-175 (185)
18 1is1_A Ribosome recycling fact 35.1 29 0.001 29.1 3.5 73 30-103 103-175 (185)
19 1wqg_A Ribosome recycling fact 33.7 32 0.0011 28.9 3.5 68 30-103 103-175 (185)
20 4g26_A Pentatricopeptide repea 33.2 79 0.0027 29.1 6.4 59 3-62 142-202 (501)
21 1ge9_A Ribosome recycling fact 31.0 79 0.0027 26.5 5.5 70 30-103 105-174 (184)
22 3spa_A Mtrpol, DNA-directed RN 26.7 78 0.0027 33.6 5.6 57 4-61 130-191 (1134)
23 3spa_A Mtrpol, DNA-directed RN 24.5 1.5E+02 0.0051 31.5 7.2 42 3-49 167-208 (1134)
No 1
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=100.00 E-value=1.7e-52 Score=369.55 Aligned_cols=187 Identities=26% Similarity=0.408 Sum_probs=168.3
Q ss_pred HHHHHHhhhccHHHHHHHHHhhcCCCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHHH
Q 045057 6 EFITVMGKKGQTRMAMRHFSEMRNSRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKIK 85 (231)
Q Consensus 6 ~~ikv~~k~Gr~~daMK~vve~~~~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkIE 85 (231)
+|..-..+=++|..+||.++++ +++||+|||||||||||||||+||+|||+|++|||+++.+|++.+++++++||++|+
T Consensus 16 klaeqaeRyddM~~~mk~v~~~-~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr~kie 94 (236)
T 3iqu_A 16 KLAEQAERYEDMAAFMKGAVEK-GEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEEKGPEVREYREKVE 94 (236)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCSHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 4444444445566789999998 799999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhccccchhhhhccccceehhhhHH--HhhhchhhhcCCcchhhhh-
Q 045057 86 AELTEICGGILKLLDQKLVPATAAAYSKVFYLKMKGDYHRYFIITVLHFSVFTGVQTA--VAKRTPILASSSEAEEEDS- 162 (231)
Q Consensus 86 ~EL~~iC~eIL~LID~~LIp~at~~ESKVFYlKMKGDYYRYlAEv~~~~~~~~~v~qa--ayk~a~~lA~~~~~~~~~~- 162 (231)
+||..+|+|||+|||++|||+++++|+||||+|||||||||+|||...+++...++.| +|++|..+|++++.|-.--
T Consensus 95 ~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPir 174 (236)
T 3iqu_A 95 TELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIR 174 (236)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH
Confidence 9999999999999999999999999999999999999999999999999987777666 9999999999988886532
Q ss_pred -----h---HHhhccccchhhhHhhHHHHhhhhhhhhhh
Q 045057 163 -----N---CINSFNKFTDENLKILSDALERKAPALLKF 193 (231)
Q Consensus 163 -----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
| |.|+..|-+++|+.+-.+|+|..++-|=..
T Consensus 175 LGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~eld~l 213 (236)
T 3iqu_A 175 LGLALNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTL 213 (236)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 4 999999999999999999999877765433
No 2
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=100.00 E-value=4.4e-52 Score=369.24 Aligned_cols=188 Identities=29% Similarity=0.462 Sum_probs=164.5
Q ss_pred HHHHHHhhhccHHHHHHHHHhhcCCCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHHH
Q 045057 6 EFITVMGKKGQTRMAMRHFSEMRNSRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKIK 85 (231)
Q Consensus 6 ~~ikv~~k~Gr~~daMK~vve~~~~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkIE 85 (231)
+|..-..+=++|..+||.++++ +++||+|||||||||||||||+||+|||+|++||||++.+|++.+++++++||++|+
T Consensus 12 klaeqaeRyddM~~~Mk~v~~~-~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~yr~kie 90 (248)
T 3uzd_A 12 RLAEQAERYDDMAAAMKNVTEL-NEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIE 90 (248)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc-CCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 3344344444556789999998 799999999999999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCC--chhhhhhhhhccccchhhhhccccceehhhhHH--HhhhchhhhcCCcchhhh
Q 045057 86 AELTEICGGILKLLDQKLVPATAAA--YSKVFYLKMKGDYHRYFIITVLHFSVFTGVQTA--VAKRTPILASSSEAEEED 161 (231)
Q Consensus 86 ~EL~~iC~eIL~LID~~LIp~at~~--ESKVFYlKMKGDYYRYlAEv~~~~~~~~~v~qa--ayk~a~~lA~~~~~~~~~ 161 (231)
+||..+|++||+|||++|||+++++ |+||||+|||||||||+|||...+++...++.| +|++|..+|++++.|-.-
T Consensus 91 ~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthP 170 (248)
T 3uzd_A 91 KELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHP 170 (248)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 9999999999999999999999999 999999999999999999999998887777666 999999999998888653
Q ss_pred h------h---HHhhccccchhhhHhhHHHHhhhhhhhhhhc
Q 045057 162 S------N---CINSFNKFTDENLKILSDALERKAPALLKFS 194 (231)
Q Consensus 162 ~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (231)
- | |.|+.-|-+++|+++..+|+|..++-|=..+
T Consensus 171 irLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~eld~l~ 212 (248)
T 3uzd_A 171 IRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLN 212 (248)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence 2 4 9999999999999999999998877654433
No 3
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=100.00 E-value=8.1e-52 Score=369.88 Aligned_cols=187 Identities=33% Similarity=0.488 Sum_probs=168.5
Q ss_pred HHHHHHhhhccHHHHHHHHHhhcCCCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHHH
Q 045057 6 EFITVMGKKGQTRMAMRHFSEMRNSRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKIK 85 (231)
Q Consensus 6 ~~ikv~~k~Gr~~daMK~vve~~~~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkIE 85 (231)
+|..-..+=++|..+||.++++ +++||+|||||||||||||||+||+|||+|++||||++.+|++.+++++++||++|+
T Consensus 39 KLaeqaeRYddMv~~MK~v~~~-~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~yr~kIe 117 (261)
T 3ubw_A 39 KLAEQAERYDEMVESMKKVAGM-DVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMVE 117 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhc-CCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 4444444555567789999998 799999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhccccchhhhhccccceehhhhHH--HhhhchhhhcCCcchhhhh-
Q 045057 86 AELTEICGGILKLLDQKLVPATAAAYSKVFYLKMKGDYHRYFIITVLHFSVFTGVQTA--VAKRTPILASSSEAEEEDS- 162 (231)
Q Consensus 86 ~EL~~iC~eIL~LID~~LIp~at~~ESKVFYlKMKGDYYRYlAEv~~~~~~~~~v~qa--ayk~a~~lA~~~~~~~~~~- 162 (231)
+||..+|+|||+|||++|||+++++|+||||+|||||||||+|||...+++...++.| +|++|..+|+..+.|-.--
T Consensus 118 ~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPir 197 (261)
T 3ubw_A 118 TELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIR 197 (261)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHH
Confidence 9999999999999999999999999999999999999999999999998887777666 9999999999988886532
Q ss_pred -----h---HHhhccccchhhhHhhHHHHhhhhhhhhhh
Q 045057 163 -----N---CINSFNKFTDENLKILSDALERKAPALLKF 193 (231)
Q Consensus 163 -----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
| |.|+-.|-+++|+++-.+|+|..++-|=..
T Consensus 198 LGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eLd~L 236 (261)
T 3ubw_A 198 LGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTL 236 (261)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 4 999999999999999999999887765443
No 4
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=100.00 E-value=4.3e-51 Score=359.81 Aligned_cols=187 Identities=33% Similarity=0.486 Sum_probs=168.4
Q ss_pred HHHHHHHhhhccHHHHHHHHHhhcCCCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHH
Q 045057 5 SEFITVMGKKGQTRMAMRHFSEMRNSRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKI 84 (231)
Q Consensus 5 ~~~ikv~~k~Gr~~daMK~vve~~~~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkI 84 (231)
++|..-..+=++|..+||.++++ +++||.||||||||||||+||+||+|||+|+++||+++.+|++.+++++++||++|
T Consensus 12 AklaeqaeRyddm~~~mk~v~~~-~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i~~yr~ki 90 (234)
T 2br9_A 12 AKLAEQAERYDEMVESMKKVAGM-DVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYRQMV 90 (234)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHhcc-cCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHH
Confidence 34444455555666788999998 68999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhccccchhhhhccccceehhhhHH--HhhhchhhhcCCcchhhhh
Q 045057 85 KAELTEICGGILKLLDQKLVPATAAAYSKVFYLKMKGDYHRYFIITVLHFSVFTGVQTA--VAKRTPILASSSEAEEEDS 162 (231)
Q Consensus 85 E~EL~~iC~eIL~LID~~LIp~at~~ESKVFYlKMKGDYYRYlAEv~~~~~~~~~v~qa--ayk~a~~lA~~~~~~~~~~ 162 (231)
++||..+|++||+|||++|||.++++|++|||+|||||||||+|||...+++...++.| +|++|..+|++.+.|-.--
T Consensus 91 e~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPi 170 (234)
T 2br9_A 91 ETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPI 170 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcH
Confidence 99999999999999999999999999999999999999999999999998887777666 9999999999888886532
Q ss_pred ------h---HHhhccccchhhhHhhHHHHhhhhhhhhh
Q 045057 163 ------N---CINSFNKFTDENLKILSDALERKAPALLK 192 (231)
Q Consensus 163 ------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (231)
| |.|+..|-+++|+++-.+|+|..++.+=.
T Consensus 171 rLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld~ 209 (234)
T 2br9_A 171 RLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDT 209 (234)
T ss_dssp HHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhc
Confidence 4 99999999999999999999998876653
No 5
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=100.00 E-value=2.7e-50 Score=359.64 Aligned_cols=187 Identities=39% Similarity=0.535 Sum_probs=167.3
Q ss_pred HHHHHHhhhccHHHHHHHHHhhcC--CCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHH
Q 045057 6 EFITVMGKKGQTRMAMRHFSEMRN--SRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSK 83 (231)
Q Consensus 6 ~~ikv~~k~Gr~~daMK~vve~~~--~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~Yrkk 83 (231)
+|..-..+=++|..+||.++++ + ++||+||||||||||||+||+||+|||+|+++||+++.+|++.++++|++||++
T Consensus 16 kLaeqaeRyddm~~~mk~v~~~-~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~~~~~~~~i~~yr~k 94 (260)
T 1o9d_A 16 KLAEQAERYEEMVEFMEKVSNS-LGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHVNSIREYRSK 94 (260)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHT-CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHcc-CCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 3444444444566688999987 6 899999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhccccchhhhhccccceehhhhHH--HhhhchhhhcCCcchhhh
Q 045057 84 IKAELTEICGGILKLLDQKLVPATAAAYSKVFYLKMKGDYHRYFIITVLHFSVFTGVQTA--VAKRTPILASSSEAEEED 161 (231)
Q Consensus 84 IE~EL~~iC~eIL~LID~~LIp~at~~ESKVFYlKMKGDYYRYlAEv~~~~~~~~~v~qa--ayk~a~~lA~~~~~~~~~ 161 (231)
|++||..+|++||+|||++|||.++++|++|||+|||||||||+|||...+++...++.| +|++|..+|+..+.|-.-
T Consensus 95 ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthP 174 (260)
T 1o9d_A 95 IENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHP 174 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999999999999999998887777666 999999999988888653
Q ss_pred h------h---HHhhccccchhhhHhhHHHHhhhhhhhhhh
Q 045057 162 S------N---CINSFNKFTDENLKILSDALERKAPALLKF 193 (231)
Q Consensus 162 ~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (231)
- | |.|+..|-+++|+.+-.+|+|..++.|=..
T Consensus 175 irLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L 215 (260)
T 1o9d_A 175 IRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTL 215 (260)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhcc
Confidence 2 4 999999999999999999999987766543
No 6
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=100.00 E-value=4e-50 Score=358.67 Aligned_cols=185 Identities=32% Similarity=0.474 Sum_probs=164.9
Q ss_pred HHHHHHhhhccHHHHHHHHHhhcC---CCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHH
Q 045057 6 EFITVMGKKGQTRMAMRHFSEMRN---SRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRS 82 (231)
Q Consensus 6 ~~ikv~~k~Gr~~daMK~vve~~~---~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~Yrk 82 (231)
+|..-..+=++|..+||.++++ + ++||.||||||||||||+||++|+|||+|++|||+++.+|++.++++|++||+
T Consensus 36 kLaeqaeRyddmv~~mk~v~~~-~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~~~~~i~~yr~ 114 (260)
T 2npm_A 36 KLAEQAERYDEMAKYMKDVVEA-RQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDASKMCGKYRS 114 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHS-CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhc-cCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 3444344444566688999997 6 89999999999999999999999999999999999998889899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhccccchhhhhccccceehhhhHH--HhhhchhhhcCCcchhh
Q 045057 83 KIKAELTEICGGILKLLDQKLVPATAAAYSKVFYLKMKGDYHRYFIITVLHFSVFTGVQTA--VAKRTPILASSSEAEEE 160 (231)
Q Consensus 83 kIE~EL~~iC~eIL~LID~~LIp~at~~ESKVFYlKMKGDYYRYlAEv~~~~~~~~~v~qa--ayk~a~~lA~~~~~~~~ 160 (231)
+|++||..+|++||+|||++|||.++++|++|||+|||||||||+|||...+++...++.| +|++|..+| +.+.|-.
T Consensus 115 kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA-~~L~pth 193 (260)
T 2npm_A 115 KVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVA-KDLEPTH 193 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-TTSCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH-HhCCCCC
Confidence 9999999999999999999999999999999999999999999999999998887777666 999999999 8888865
Q ss_pred hh------h---HHhhccccchhhhHhhHHHHhhhhhhhhh
Q 045057 161 DS------N---CINSFNKFTDENLKILSDALERKAPALLK 192 (231)
Q Consensus 161 ~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (231)
-- | |.|+..|-+++|+.+-.+|+|..++.|=.
T Consensus 194 PirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~ 234 (260)
T 2npm_A 194 PIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDK 234 (260)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGGG
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhc
Confidence 32 4 99999999999999999999988776643
No 7
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=100.00 E-value=9.8e-50 Score=350.47 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=154.1
Q ss_pred HHHHHHhhhccHHHHHHHHHh----hcCCCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHH
Q 045057 6 EFITVMGKKGQTRMAMRHFSE----MRNSRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYR 81 (231)
Q Consensus 6 ~~ikv~~k~Gr~~daMK~vve----~~~~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~Yr 81 (231)
+|..-..+=++|..+||.+++ + +++||+||||||||||||+||+||+|||+|+++|||+ +|++.+++++++||
T Consensus 14 KlaeqaeRyddM~~~mk~v~~~~~~~-~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke--k~~~~~~~~i~~yr 90 (227)
T 2o8p_A 14 QVFEWGGCFDKMFEALKSLIYLSEFE-NSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ--LNNDELVKICSEYV 90 (227)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--CSCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhhhcc-CCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Confidence 444444444556678999999 7 6899999999999999999999999999999999998 68889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhccccchhhhhccccceehhhhHHHhhhchhhhcCCcchhhh
Q 045057 82 SKIKAELTEICGGILKLLDQKLVPATAAAYSKVFYLKMKGDYHRYFIITVLHFSVFTGVQTAVAKRTPILASSSEAEEED 161 (231)
Q Consensus 82 kkIE~EL~~iC~eIL~LID~~LIp~at~~ESKVFYlKMKGDYYRYlAEv~~~~~~~~~v~qaayk~a~~lA~~~~~~~~~ 161 (231)
++|++||..+|+||++|||++|||++ |+||||+|||||||||+|||...+ ..-++.+|++|..+|++.+.|-.-
T Consensus 91 ~kie~EL~~iC~dil~lld~~Lip~a---EskVFY~KMKGDYyRYlAE~~~g~---~e~a~~aY~~A~~iA~~~L~pthP 164 (227)
T 2o8p_A 91 FSLRKDIKAFLQSFEDCVDRLVEKSF---FSKFFKLKVKSDISRYKLEFGLCS---LEDSKKIHQDAFTLLCEHPDKIEQ 164 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCSH---HHHHHHHHHHHHHHHHHHHTTSSC---HHHHHHHHHHHHHHHHHCGGGGGG
T ss_pred HHHHHHHHHHHhhHHHHHHHhccCcH---HHHHHHHHHhhhHHHHHHHHcccc---HHHHHHHHHHHHHHHHhhCCCCCh
Confidence 99999999999999999999999998 999999999999999999999987 333444999999999998888663
Q ss_pred h------h---HHhhccccchhhhHhhHHHHhhhhh
Q 045057 162 S------N---CINSFNKFTDENLKILSDALERKAP 188 (231)
Q Consensus 162 ~------~---~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (231)
- | |.|+.-|-+++|+.+-.+|++.+-.
T Consensus 165 irLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~ 200 (227)
T 2o8p_A 165 LPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILEL 200 (227)
T ss_dssp SCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2 5 9999999999999999999996533
No 8
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=100.00 E-value=7.1e-50 Score=358.45 Aligned_cols=184 Identities=14% Similarity=0.165 Sum_probs=152.2
Q ss_pred HHHHHhhhccHHHHHHHHHhhcCCCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhh-hhcCC-chhHHHHHHHHHHH
Q 045057 7 FITVMGKKGQTRMAMRHFSEMRNSRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKE-ELRGN-QDYVSVIKEYRSKI 84 (231)
Q Consensus 7 ~ikv~~k~Gr~~daMK~vve~~~~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqke-e~kgn-e~~~~~I~~YrkkI 84 (231)
++|..-.++|++|.+..++++ +++||+|||||||||||||||+||+|||+|++||||+ +.+|+ +.+++++++||++|
T Consensus 35 ~AKLaeqaeRYddMv~~M~e~-~~eLs~EERNLLSvAYKNvIgarR~swRiissieqke~e~kg~~~~~~~~i~~yr~ki 113 (268)
T 3efz_A 35 RAKLADMVGNYKDVIKVLTES-SDFRDNSLILLLAGSLRNRVTSIRNSLKSIKSQEEKLRKEKSLNNEFIQVIEDIKRDF 113 (268)
T ss_dssp -----------CHHHHHHTC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhc-CCcCCHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhccCChHHHHHHHHHHHHHH
Confidence 456667777777776666888 7999999999999999999999999999999999999 78888 88999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCchhhhhhhhhccccchhhhhccccceehhhhHH--HhhhchhhhcCCc--chhh
Q 045057 85 KAELTEICGGILKLLDQKLVPATAAAYSKVFYLKMKGDYHRYFIITVLHFSVFTGVQTA--VAKRTPILASSSE--AEEE 160 (231)
Q Consensus 85 E~EL~~iC~eIL~LID~~LIp~at~~ESKVFYlKMKGDYYRYlAEv~~~~~~~~~v~qa--ayk~a~~lA~~~~--~~~~ 160 (231)
++||..+|+|||+|||++|||.++++ ++|||+|||||||||+|||...+++...++.| +|++|..+|++.+ .|-.
T Consensus 114 e~EL~~iC~diL~llD~~Lip~a~~~-skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pTh 192 (268)
T 3efz_A 114 EESILLESEDVIRIIDDNLLMYSEEG-ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSD 192 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGCCHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGC
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCch-hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 99999999999999999999999999 99999999999999999999999887777666 9999999999888 6544
Q ss_pred hh------h---HHhhccccchhhhHhhHHHHhhhhhhhhh
Q 045057 161 DS------N---CINSFNKFTDENLKILSDALERKAPALLK 192 (231)
Q Consensus 161 ~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (231)
-- | |.|+..|-+++|+++..+|+|.+--||-.
T Consensus 193 PiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde~~~AIae 233 (268)
T 3efz_A 193 PLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAENSRSD 233 (268)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 22 4 99999999999999999999994434433
No 9
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=67.70 E-value=9.5 Score=30.57 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=52.4
Q ss_pred cHHHHHHHHHhhc-----CCCCCCCcchhHHHHHhhhhhhhhhHHHHHHh--HHhhhhhcCCchhHHHHHHHHHHHHHHH
Q 045057 16 QTRMAMRHFSEMR-----NSRFRPDASPLLHEADKNVIGARRASWRIMSS--IKQKEELRGNQDYVSVIKEYRSKIKAEL 88 (231)
Q Consensus 16 r~~daMK~vve~~-----~~eLs~EERNLLSVAYKNVIg~rR~SwRiLss--iEqkee~kgne~~~~~I~~YrkkIE~EL 88 (231)
||+-|+..+.... |.+||.|-|-=|.---|...-.-|-|.|-+.. ...-... .+...+-++-.+..++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl---~KdkeISEDe~kr~e~eI 88 (121)
T 3lf9_A 12 RMDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAAL---GKDKEVNWFDISQALWEI 88 (121)
T ss_dssp HHHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG---GGCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh---hhcCCCCHHHHHhHHHHH
Confidence 5555555554332 78999999998888888888777888887742 1111100 000112345556677777
Q ss_pred HHHHHHHHHHHhhcc
Q 045057 89 TEICGGILKLLDQKL 103 (231)
Q Consensus 89 ~~iC~eIL~LID~~L 103 (231)
..+.+.-+.-||..|
T Consensus 89 QKLTDkyIkkID~ll 103 (121)
T 3lf9_A 89 QKLTDVAVKKIDEVL 103 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777654
No 10
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=57.55 E-value=21 Score=22.14 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045057 75 SVIKEYRSKIKAELTEICGGILKLLDQ 101 (231)
Q Consensus 75 ~~I~~YrkkIE~EL~~iC~eIL~LID~ 101 (231)
+.++.||.+|.+.|..|-+.|-.|+-+
T Consensus 4 krlrkfrnkikeklkkigqkiqgllpk 30 (32)
T 1lyp_A 4 KRLRKFRNKIKEKLKKIGQKIQGLLPK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 567899999999999999999888743
No 11
>2kvs_A Uncharacterized protein MW0776; PSI-2, NESG, BIG target, structural genomics, protein structure initiative; NMR {Staphylococcus aureus}
Probab=55.04 E-value=10 Score=28.41 Aligned_cols=61 Identities=10% Similarity=0.056 Sum_probs=43.8
Q ss_pred ccchhhhhccccceehhhhHHHhhhchhhhcCCcchhhhhhHHhhccccchhhhHhhHHHHhh
Q 045057 123 YHRYFIITVLHFSVFTGVQTAVAKRTPILASSSEAEEEDSNCINSFNKFTDENLKILSDALER 185 (231)
Q Consensus 123 YYRYlAEv~~~~~~~~~v~qaayk~a~~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (231)
||.|+--+...+.-....+..++++ ..-+|.+-..++|++.|.+ +.+..+.|.++..+|.-
T Consensus 8 FY~flmtfr~~~dp~g~LA~~i~~D-~~FPK~~~d~~eIs~Yle~-~~~~~~~~e~vkralsl 68 (80)
T 2kvs_A 8 FYNFIMGFQNDNTPFGILAEHVSED-KAFPRLEERHQVIRAYVMS-NYTDHQLIETTNRAISL 68 (80)
T ss_dssp HHHHHTTTTTSSCHHHHHHHHHHTS-CCCCSSCSSSHHHHHHHHH-HCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCChHHHHHHHHhhC-cCCCCCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence 6777766655333333334445554 3568888889999999999 99999999999988763
No 12
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=46.87 E-value=28 Score=29.31 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=47.5
Q ss_pred CCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045057 30 SRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKIKAELTEICGGILKLLDQKL 103 (231)
Q Consensus 30 ~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkIE~EL~~iC~eIL~LID~~L 103 (231)
|+||.|-|.=|.-.-|...-.-|.+.|-+..--.. .-+...+...+-++-.++.++|+..+.+.-+.-||..|
T Consensus 104 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~-~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 176 (185)
T 1eh1_A 104 PPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALD-KLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999988888888888888887421100 00000011123355667778888888888888777654
No 13
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=43.07 E-value=17 Score=31.32 Aligned_cols=73 Identities=7% Similarity=0.042 Sum_probs=46.6
Q ss_pred CCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045057 30 SRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKIKAELTEICGGILKLLDQKL 103 (231)
Q Consensus 30 ~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkIE~EL~~iC~eIL~LID~~L 103 (231)
|+||.|-|.=|.-.-|...-.-|.|.|-+..--... -+.-.+...+-++-.++.++|+..+.++-+.-||..|
T Consensus 127 P~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~-lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD~~l 199 (209)
T 4gfq_A 127 PALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDD-LKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIA 199 (209)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999888888888888888874211000 0000000112345566777788888888777777654
No 14
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=37.72 E-value=26 Score=29.47 Aligned_cols=73 Identities=10% Similarity=0.175 Sum_probs=46.4
Q ss_pred CCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045057 30 SRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKIKAELTEICGGILKLLDQKL 103 (231)
Q Consensus 30 ~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkIE~EL~~iC~eIL~LID~~L 103 (231)
|+||.|-|.=|.---|...-.-|.+.|-+..--.. .-+...+...+-++-.++.++|+..+.++-+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~-~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1dd5_A 103 PSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILK-KIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVF 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999989888888888888888887421000 00000000112345566777788888877777777654
No 15
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=37.29 E-value=1e+02 Score=23.69 Aligned_cols=70 Identities=17% Similarity=0.113 Sum_probs=43.6
Q ss_pred cchHHHHHHHhhhccHHHHHHHHHhhcCCCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHH
Q 045057 2 GIYSEFITVMGKKGQTRMAMRHFSEMRNSRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYR 81 (231)
Q Consensus 2 ~~y~~~ikv~~k~Gr~~daMK~vve~~~~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~Yr 81 (231)
.+|+...+.+.+.|++++||+-.-+.. .+|+-|.|..=+.. ++-|++-+-+ ...+++.+|++-.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa---------~yL~eAmkltqs~q-----a~~SLqLQrd--~HlKQ~~liq~r~ 79 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT---------TYLSEAMKLTESEQ-----AHLSLELQRD--SHMKQLLLIQERW 79 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHHHHHHTTCCCHH-----HHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH---------HHHHHHHHhhccHH-----HHHHHHHHHH--HHHHHHHHHHHHH
Confidence 368888999999999999998766653 46777777763332 4444433322 1234556665555
Q ss_pred HHHHHH
Q 045057 82 SKIKAE 87 (231)
Q Consensus 82 kkIE~E 87 (231)
+....|
T Consensus 80 k~~~~e 85 (97)
T 2crb_A 80 KRAKRE 85 (97)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 544433
No 16
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=36.24 E-value=61 Score=29.92 Aligned_cols=61 Identities=10% Similarity=0.097 Sum_probs=38.4
Q ss_pred chHHHHHHHhhhccHHHHHHHHHhhcCCCCCCCcc--hhHHHHHhhhhhhhhhHHHHHHhHHhh
Q 045057 3 IYSEFITVMGKKGQTRMAMRHFSEMRNSRFRPDAS--PLLHEADKNVIGARRASWRIMSSIKQK 64 (231)
Q Consensus 3 ~y~~~ikv~~k~Gr~~daMK~vve~~~~eLs~EER--NLLSVAYKNVIg~rR~SwRiLssiEqk 64 (231)
.|.-||..+++.|++++|++.+.+|....+.++.+ |.|-.+|-. .|....+++++..+...
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHHHHHHHHhc
Confidence 47788888999999998888888875344555543 233333321 24456677777665433
No 17
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=35.83 E-value=28 Score=29.31 Aligned_cols=73 Identities=7% Similarity=0.114 Sum_probs=45.7
Q ss_pred CCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045057 30 SRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKIKAELTEICGGILKLLDQKL 103 (231)
Q Consensus 30 ~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkIE~EL~~iC~eIL~LID~~L 103 (231)
|+||.|-|.=|.---|...-.-|.+.|-+..--.. .-+...+...+-++-.++.++|+..+.+.-+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~-~lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1ise_A 103 PPLTEERRKDLTKIVRGEAEQARVAVRNVGRDAND-KVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAAL 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999988888888888888888887421000 00000000012345566777777777777777777654
No 18
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=35.11 E-value=29 Score=29.13 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=46.0
Q ss_pred CCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045057 30 SRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKIKAELTEICGGILKLLDQKL 103 (231)
Q Consensus 30 ~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkIE~EL~~iC~eIL~LID~~L 103 (231)
|+||.|-|.=|.---|...-.-|.+.|-+..--... -+...+...+-++-.++.++|+..+.+.-+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1is1_A 103 PPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANND-LKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVL 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999888888888888888888874210000 0000000012345566777778777777777777654
No 19
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=33.68 E-value=32 Score=28.90 Aligned_cols=68 Identities=10% Similarity=0.148 Sum_probs=45.0
Q ss_pred CCCCCCcchhHHHHHhhhhhhhhhHHHHHHh-----HHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045057 30 SRFRPDASPLLHEADKNVIGARRASWRIMSS-----IKQKEELRGNQDYVSVIKEYRSKIKAELTEICGGILKLLDQKL 103 (231)
Q Consensus 30 ~eLs~EERNLLSVAYKNVIg~rR~SwRiLss-----iEqkee~kgne~~~~~I~~YrkkIE~EL~~iC~eIL~LID~~L 103 (231)
|+||.|-|.=|.---|...-.-|.+.|-+.. +...+. .+ .+-++-.++.++|+..+.+.-+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K-~~-----~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1wqg_A 103 PQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRK-EG-----EAGEDEVGRAEKDLDKTTHQYVTQIDELV 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT-----SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999998888888888888888887742 111111 01 12345566677777777777777777644
No 20
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=33.18 E-value=79 Score=29.15 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=40.7
Q ss_pred chHHHHHHHhhhccHHHHHHHHHhhcCCCCCCCc--chhHHHHHhhhhhhhhhHHHHHHhHH
Q 045057 3 IYSEFITVMGKKGQTRMAMRHFSEMRNSRFRPDA--SPLLHEADKNVIGARRASWRIMSSIK 62 (231)
Q Consensus 3 ~y~~~ikv~~k~Gr~~daMK~vve~~~~eLs~EE--RNLLSVAYKNVIg~rR~SwRiLssiE 62 (231)
.|.-||..+++.|++++|++.+.+|....+.+++ -|.|-.+|-.. |..-.+++++..+.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~-g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT-KNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC-CCHHHHHHHHHHHH
Confidence 4889999999999999999999988644455543 44444454332 44456677775553
No 21
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=31.03 E-value=79 Score=26.49 Aligned_cols=70 Identities=6% Similarity=0.107 Sum_probs=48.3
Q ss_pred CCCCCCcchhHHHHHhhhhhhhhhHHHHHHhHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 045057 30 SRFRPDASPLLHEADKNVIGARRASWRIMSSIKQKEELRGNQDYVSVIKEYRSKIKAELTEICGGILKLLDQKL 103 (231)
Q Consensus 30 ~eLs~EERNLLSVAYKNVIg~rR~SwRiLssiEqkee~kgne~~~~~I~~YrkkIE~EL~~iC~eIL~LID~~L 103 (231)
|+||.|-|.=|.---|...-.-|.+.|-+..--... -+... ++-++-.++.++|+..+.++-+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~---kiseD~~k~~e~~iQkltd~~i~~id~~~ 174 (184)
T 1ge9_A 105 PPLTEERRRELVRLLHKITEEARVRVRNVRREAKEM-IEELE---GISEDEKKRALERLQKLTDKYIDEINKLM 174 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHST---TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999998888888888888888874211111 11111 13356667788888888888888887654
No 22
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=26.73 E-value=78 Score=33.57 Aligned_cols=57 Identities=11% Similarity=-0.022 Sum_probs=25.1
Q ss_pred hHHHHHHHhhhccHHHHHHHHHhhc-----CCCCCCCcchhHHHHHhhhhhhhhhHHHHHHhH
Q 045057 4 YSEFITVMGKKGQTRMAMRHFSEMR-----NSRFRPDASPLLHEADKNVIGARRASWRIMSSI 61 (231)
Q Consensus 4 y~~~ikv~~k~Gr~~daMK~vve~~-----~~eLs~EERNLLSVAYKNVIg~rR~SwRiLssi 61 (231)
|.-||.++||.|++++|++.+.+|. +...+.---|.|-.+|-. -|....|++++..+
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck-~G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR-QGAFKELVYVLFMV 191 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 4445555555555555555543321 123344444444444422 23344444444433
No 23
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=24.51 E-value=1.5e+02 Score=31.48 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=33.5
Q ss_pred chHHHHHHHhhhccHHHHHHHHHhhcCCCCCCCcchhHHHHHhhhhh
Q 045057 3 IYSEFITVMGKKGQTRMAMRHFSEMRNSRFRPDASPLLHEADKNVIG 49 (231)
Q Consensus 3 ~y~~~ikv~~k~Gr~~daMK~vve~~~~eLs~EERNLLSVAYKNVIg 49 (231)
.|.-||..+||.|++++|++.+.+|....+.++. +.|..+|+
T Consensus 167 TYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv-----vTYntLI~ 208 (1134)
T 3spa_A 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL-----LSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-----HHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH-----HHHHHHHH
Confidence 4899999999999999999999999655677765 35555554
Done!