BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045058
(1005 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEV 654
+GIL++ +L A L D G SD +C+ + G+ ++T T+ NL+P++N+ +T+ +
Sbjct: 12 VGILQVKVLKAADL---LAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 655 FDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR 697
D VL V VFD E + D +GKV I + ++ G+
Sbjct: 69 KDIHDVLEVTVFD-----EDGDKPPDF-LGKVAIPLLSIRDGQ 105
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 266 VERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAF 323
V+ + L V+V+KA +L A D +G DPF +++GN + T KN NP+W++VF F
Sbjct: 9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 66
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKL 65
L V+V+ A +LL D G S F L R +T +LNP WN+ F F I D +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 74
Query: 66 HYLTLEAYIYNNIGDTNSRSFLGKVCL 92
LE +++ GD FLGKV +
Sbjct: 75 ----LEVTVFDEDGD-KPPDFLGKVAI 96
Score = 36.6 bits (83), Expect = 0.070, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFE 495
++V V++A DL+ + + D + ++GN L+T + L+ WN+ F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTF-PIKDIH 72
Query: 496 DHLVLTVEDRVGPGKDEIIGRVIIPLSAI 524
D L +TV D G + +G+V IPL +I
Sbjct: 73 DVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYF---NISD 61
K+ + VV A L KD GSS +V + + RT +LNPVW E+F+F N SD
Sbjct: 18 KISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSD 77
Query: 62 ASKLHYLTLEAYIYNNIGDTNSRS---FLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSH 118
K+ L + I + + R FLG+ + + LS + + Y L+KR S
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT---LSGEMDVWYNLDKRTDKSA 134
Query: 119 VRGELGLKVYI 129
V G + L + +
Sbjct: 135 VSGAIRLHISV 145
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 274 VRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAF----SRDRMQ 329
+ VV A+ L A D TGS DP+V V++G K TK N NP W + F F S DR++
Sbjct: 21 ITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIK 80
Query: 330 ASVLE 334
VL+
Sbjct: 81 VRVLD 85
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 611 MKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFD--- 667
++ +D G+SD Y + G RT+T+ NL+P + E + +E + + + V V D
Sbjct: 29 LQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDD 88
Query: 668 --NSQLGEKSNGNKDLKIGKVRIRISTL 693
S++ ++ D +G+ I + TL
Sbjct: 89 DIKSRVKQRFKRESDDFLGQTIIEVRTL 116
Score = 37.7 bits (86), Expect = 0.034, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLF------- 488
+ + VV AQ L +K D YV Q+G +TK L+ VW E+ F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYG-NLNPVWEENFHFECHNSSD 77
Query: 489 ---VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEK 542
V +D + V+ R D+ +G+ II + + D W+NL+K
Sbjct: 78 RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDV------WYNLDK 128
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 3/55 (5%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF 323
L V+++KA+ELPA D +G+ DPFV++ + +K TK KN NP W++ F F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYF 57
L V+++ A L KD G+S FV++Y + T +K +LNP WNE+F F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDH 497
V+V+EA +L + N + Y + +G+Q T+ Q TL+ WN + F + ++D
Sbjct: 391 VHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQD-TLNPKWNFNCQFFIKDLYQDV 449
Query: 498 LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADER 531
L LT+ DR D+ +GR IP++ I + +
Sbjct: 450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESK 483
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEV 654
IG L + ++ A L K G S+ YC G + TRT+ D L+PK+N + +
Sbjct: 386 IGRLMVHVIEATELKACKPN---GKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFI 442
Query: 655 FDP-ATVLTVGVFDNSQLG-EKSNGNKDLKIGKVRIRISTLE--TGRIYTHSYP 704
D VL + +FD Q + G ++ + K+R + T R+ H P
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVP 496
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWH 318
L V V++A EL A G +P+ E+ +G+ T+ + NP+W+
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWN 435
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISD 61
+L V V+ A L G S+ + E+ Q + T ++ LNP WN + F I D
Sbjct: 388 RLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKD 444
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
KL V V A NL+P D G S +V+L + + +T + LNP WNESF F +
Sbjct: 17 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
Query: 60 SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
+ K L++E + ++ T F+G +
Sbjct: 77 KPSDKDRRLSVEIWDWDR---TTRNDFMGSLSF 106
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAF 323
L+V V A+ L MD G DP+V++K+ K TK NPQW++ F F
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 74
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVA 490
+ V V +A++L+P + N D YVK ++ KTK ++ TL+ WNE F
Sbjct: 18 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS-TLNPQWNESFTF-K 75
Query: 491 AEPFEDHLVLTVE 503
+P + L+VE
Sbjct: 76 LKPSDKDRRLSVE 88
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
KL V V A NL+P D G S +V+L + + +T + LNP WNESF F +
Sbjct: 18 KLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
Query: 60 SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
+ K L++E + ++ T F+G +
Sbjct: 78 KPSDKDRRLSVEIWDWDR---TTRNDFMGSLSF 107
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAF 323
L+V V A+ L MD G DP+V++K+ K TK NPQW++ F F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 75
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVA 490
+ V V +A++L+P + N D YVK ++ KTK ++ TL+ WNE F
Sbjct: 19 LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS-TLNPQWNESFTF-K 76
Query: 491 AEPFEDHLVLTVE 503
+P + L+VE
Sbjct: 77 LKPSDKDRRLSVE 89
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 52/257 (20%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAFS---R 325
L VR+++A +LPA D G DP+V++ + K TK + K NP +++ F FS
Sbjct: 23 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 82
Query: 326 DRMQASVLEXXXXXXXXXXXXXXGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIK- 384
+ Q + G V D PPD PL W + + EK
Sbjct: 83 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 139
Query: 385 GELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQ 444
GEL ++ + P + V +++A
Sbjct: 140 GELNFSLC------------------------------------YLPTAGLLTVTIIKAS 163
Query: 445 DLVPTEKNHFPDVYVKAQI---GNQVLKTKIC-QARTLSAVWNEDLLF-VAAEPFED-HL 498
+L + F D YVKA + G ++ K K + TL+ +NE L+F VA E E+ L
Sbjct: 164 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 223
Query: 499 VLTVEDRVGPGKDEIIG 515
+ V D G +E+IG
Sbjct: 224 SIAVVDYDCIGHNEVIG 240
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISD 61
+L V+++ A +L KD G S +V++Y ++F+T + LNP++NE+F F++
Sbjct: 22 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 81
Query: 62 AS----KLHY 67
A KLH+
Sbjct: 82 AELAQRKLHF 91
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVE--LYFDGQRFR---TTIKENDLNPVWNESFYFNIS 60
L V ++ A NL D G S +V+ L +G+R + T+IK+N LNP +NE+ F+++
Sbjct: 155 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 214
Query: 61 DASKLHY-LTLEAYIYNNIG 79
S + L++ Y+ IG
Sbjct: 215 PESVENVGLSIAVVDYDCIG 234
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 55/241 (22%)
Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLFVA--AE 492
V +++A DL + N F D YVK + + +TK+ +TL+ ++NE F AE
Sbjct: 25 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPLAE 83
Query: 493 PFEDHLVLTVEDRVGPGKDEIIGRVIIP--LSAIEKRADERIIHSRWFNLEKPVAVDVDQ 550
+ L +V D + ++IG+V++ L E+ D +P+ D+ +
Sbjct: 84 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD------------RPLWRDILE 131
Query: 551 LKKEKFS-SRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLH 609
EK ++ +C + P+ G+L + I+ A L
Sbjct: 132 GGSEKADLGELNFSLC-------------------------YLPTAGLLTVTIIKASNLK 166
Query: 610 PMKTRDGRGTSDTYCVAKY---GHKWVRTRTLV--DNLSPKYNEQYTWEVFDPATVLTVG 664
M D G SD Y A G + + +T + + L+P YNE ++V P +V VG
Sbjct: 167 AM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA-PESVENVG 222
Query: 665 V 665
+
Sbjct: 223 L 223
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 52/257 (20%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAFS---R 325
L VR+++A +LPA D G DP+V++ + K TK + K NP +++ F FS
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81
Query: 326 DRMQASVLEXXXXXXXXXXXXXXGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIK- 384
+ Q + G V D PPD PL W + + EK
Sbjct: 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGSEKADL 138
Query: 385 GELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQ 444
GEL ++ + P + V +++A
Sbjct: 139 GELNFSLC------------------------------------YLPTAGLLTVTIIKAS 162
Query: 445 DLVPTEKNHFPDVYVKAQI---GNQVLKTKIC-QARTLSAVWNEDLLF-VAAEPFED-HL 498
+L + F D YVKA + G ++ K K + TL+ +NE L+F VA E E+ L
Sbjct: 163 NLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 222
Query: 499 VLTVEDRVGPGKDEIIG 515
+ V D G +E+IG
Sbjct: 223 SIAVVDYDCIGHNEVIG 239
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISD 61
+L V+++ A +L KD G S +V++Y ++F+T + LNP++NE+F F++
Sbjct: 21 QLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL 80
Query: 62 AS----KLHY 67
A KLH+
Sbjct: 81 AELAQRKLHF 90
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVE--LYFDGQRFR---TTIKENDLNPVWNESFYFNIS 60
L V ++ A NL D G S +V+ L +G+R + T+IK+N LNP +NE+ F+++
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213
Query: 61 DASKLHY-LTLEAYIYNNIG 79
S + L++ Y+ IG
Sbjct: 214 PESVENVGLSIAVVDYDCIG 233
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 55/241 (22%)
Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLFVA--AE 492
V +++A DL + N F D YVK + + +TK+ +TL+ ++NE F AE
Sbjct: 24 VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV-HRKTLNPIFNETFQFSVPLAE 82
Query: 493 PFEDHLVLTVEDRVGPGKDEIIGRVIIP--LSAIEKRADERIIHSRWFNLEKPVAVDVDQ 550
+ L +V D + ++IG+V++ L E+ D +P+ D+ +
Sbjct: 83 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD------------RPLWRDILE 130
Query: 551 LKKEKFS-SRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLH 609
EK ++ +C + P+ G+L + I+ A L
Sbjct: 131 GGSEKADLGELNFSLC-------------------------YLPTAGLLTVTIIKASNLK 165
Query: 610 PMKTRDGRGTSDTYCVAKY---GHKWVRTRTLV--DNLSPKYNEQYTWEVFDPATVLTVG 664
M D G SD Y A G + + +T + + L+P YNE ++V P +V VG
Sbjct: 166 AM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA-PESVENVG 221
Query: 665 V 665
+
Sbjct: 222 L 222
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
KL V V A NL+P D G S +V+L + + +T + LNP WNESF F +
Sbjct: 19 KLHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
Query: 60 SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
+ K L++E + ++ T F G +
Sbjct: 79 KPSDKDRRLSVEIWDWDR---TTRNDFXGSLSF 108
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAF 323
L+V V A+ L D G DP+V++K+ K TK NPQW++ F F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTF 76
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVA 490
+ V V +A++L+P + N D YVK ++ KTK ++ TL+ WNE F
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS-TLNPQWNESFTF-K 77
Query: 491 AEPFEDHLVLTVE 503
+P + L+VE
Sbjct: 78 LKPSDKDRRLSVE 90
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 3 NLKLG---VQVVGAHNLLPKDGKGSSSAFVELYF---DGQ-----------RFRTTIKEN 45
N LG + ++ A NL+P+D G S FV++Y GQ + RT +
Sbjct: 14 NYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 46 DLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVV 105
LNP WN++ + +L TLE ++ + +S FLG+V + +S L D+
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVW-DYDRFSSNDFLGEVLIDLSSTSHL-DNTP 131
Query: 106 LHYPLEKR 113
YPL+++
Sbjct: 132 RWYPLKEQ 139
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI--------------GNYKGITKHYEKNQNPQW 317
L + +++AR L D G DPFV+V + YK TK+ +K+ NP+W
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 318 HQVFAFSRDRMQ 329
+Q + M+
Sbjct: 80 NQTVIYKSISME 91
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 18/103 (17%)
Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVL-----------KTKICQARTLSAVWN 483
+++++A++LVP + N + D +VK + QV+ +TK Q ++L+ WN
Sbjct: 22 IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWN 80
Query: 484 EDLLFVA---AEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSA 523
+ +++ + + + L +TV D ++ +G V+I LS+
Sbjct: 81 QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSS 123
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
++ V V A NL+P D G S +V+L + + +T + LNPVWNE+F FN+
Sbjct: 21 EIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
Query: 60 SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
L++E + ++ T+ F+G +
Sbjct: 81 KPGDVERRLSVEVWDWDR---TSRNDFMGAMSF 110
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLF 488
+ V V EA++L+P + N D YVK ++ KT+ +A TL+ VWNE +F
Sbjct: 22 IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKA-TLNPVWNETFVF 78
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQR----FRTTIKENDLNPVWNESFYFN 58
L V+VV +L KD G+S +V+L D R +T + LNP WNE FYF
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 59 ISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE 111
++ ++ H L E + N + FLG+V VPLS H P E
Sbjct: 83 VNPSN--HRLLFEVFDENRL---TRDDFLGQVD------VPLS-----HLPTE 119
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQ--IGNQVLKTKICQART----LSAVWNEDLLFV 489
+RV VV DL + D YVK + ++ + + Q +T L+ WNE+ F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF- 81
Query: 490 AAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAI 524
P L+ V D +D+ +G+V +PLS +
Sbjct: 82 RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 597 ILELGILNAVGLHPMKTRDGRGTSDTYC-----VAKYGHKW--VRTRTLVDNLSPKYNEQ 649
IL + +++ + L +D G SD Y VA + V+T+T+ L+PK+NE+
Sbjct: 22 ILRVKVVSGIDL---AKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 650 YTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET 695
+ + V L VFD ++L +D +G+V + +S L T
Sbjct: 79 FYFRVNPSNHRLLFEVFDENRL------TRDDFLGQVDVPLSHLPT 118
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGI----TKHYEKNQNPQWHQVFAF 323
L V+VV +L D+ G+ DP+V++ + + + TK +K NP+W++ F F
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVELYF------DGQRFRTTIKENDLNPVWNESFYFNI 59
L V V A NL+P D G S +V+L + ++ TIK + LNP WNE+F F +
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS-LNPEWNETFRFQL 91
Query: 60 SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCL 92
++ K L++E + ++ T+ F+G +
Sbjct: 92 KESDKDRRLSVEIWDWDL---TSRNDFMGSLSF 121
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAF 323
L V V A+ L MD G DP+V++K+ K TK + + NP+W++ F F
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 89
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI-------GNQVLKTKICQARTLSAVWNEDLLFVA 490
V V +A++LVP + N D YVK ++ Q KT C +L+ WNE F
Sbjct: 35 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC---SLNPEWNETFRFQL 91
Query: 491 AEPFED-HLVLTVEDRVGPGKDEIIGRVIIPLSAIEK 526
E +D L + + D +++ +G + +S ++K
Sbjct: 92 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNIS 60
L V V A NL+P D G S +V+L + +T ++ LNP WNE+F F +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 61 DASKLHYLTLEAYIYNNIGDTNSRSFLGKV 90
++ K L++E + ++ T+ F+G +
Sbjct: 234 ESDKDRRLSVEIWDWDL---TSRNDFMGSL 260
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI-----GNYKGITKHYEKNQNPQWHQVFAFS 324
L V V A+ L MD G DP+V++K+ K TK + + NP+W++ F F
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ 231
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVAAE 492
V V +A++LVP + N D YVK ++ KTK ++ +L+ WNE F E
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKS-SLNPEWNETFRFQLKE 234
Query: 493 PFED-HLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNL 540
+D L + + D +++ +G + +S ++K + WF L
Sbjct: 235 SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVD-----GWFKL 278
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF 323
L V +++A ELPA+D+ G+ DP+V+V + K TK + K NP +++ F F
Sbjct: 19 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 73
Score = 36.2 bits (82), Expect = 0.094, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFN 58
+N +L V ++ A L D G+S +V+++ ++F T + LNPV+NE F F
Sbjct: 15 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFK 74
Query: 59 ISDASKLHYLTLEAYIYN 76
+ S+L TL +Y+
Sbjct: 75 VP-YSELGGKTLVMAVYD 91
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF 323
L V +++A ELPA+D+ G+ DP+V+V + K TK + K NP +++ F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1 MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYF 57
+N +L V ++ A L D G+S +V+++ ++F T + LNPV+NE F F
Sbjct: 31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 58 NISDASKLHYLTLEAYIYN 76
+ S+L TL +Y+
Sbjct: 91 KVP-YSELGGKTLVMAVYD 108
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF 323
L V +++A ELPA+D+ G+ DP+V+V + K TK + K NP +++ F F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1 MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYF 57
+N +L V ++ A L D G+S +V+++ ++F T + LNPV+NE F F
Sbjct: 39 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Query: 58 NISDASKLHYLTLEAYIYN 76
+ S+L TL +Y+
Sbjct: 99 KVP-YSELGGKTLVMAVYD 116
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF 323
L V +++A ELPA+D+ G+ DP+V+V + K TK + K NP +++ F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1 MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYF 57
+N +L V ++ A L D G+S +V+++ ++F T + LNPV+NE F F
Sbjct: 31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 58 NISDASKLHYLTLEAYIYN 76
+ S+L TL +Y+
Sbjct: 91 KVP-YSELGGKTLVMAVYD 108
>pdb|2JQZ|A Chain A, Solution Structure Of The C2 Domain Of Human Smurf2
Length = 131
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG--QRFRTTIKENDLNPVWNESF--YFNI 59
+KL + V+ A NL+ KD F ++ DG Q T +N L+P WN+ + Y
Sbjct: 3 VKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPKWNQHYDLYIGK 62
Query: 60 SDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDS 103
SD+ +T+ + + I FLG V L N+ L D+
Sbjct: 63 SDS-----VTISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDT 101
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKI---GNYKGITKHYEKNQNPQWHQVFAF 323
L V +++A ELPA+D+ G+ DP+V+V + K TK + K NP +++ F F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 75
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 1 MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYF 57
+N +L V ++ A L D G+S +V+++ ++F T + LNPV+NE F F
Sbjct: 16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 75
Query: 58 NISDASKLHYLTLEAYIYN 76
+ S+L TL +Y+
Sbjct: 76 KVP-YSELAGKTLVMAVYD 93
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 19/156 (12%)
Query: 598 LELGILNAVGLHPMKTRDGRGTSDTYC---VAKYGHKWVRTRTLVDNLSPKYNEQYTWEV 654
L +GI+ A L + D GTSD Y + K T+ L+P +NEQ+T++V
Sbjct: 21 LLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 77
Query: 655 FDP-----ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLH 709
P L + V+D + +K IG+ ++ ++T++ G + L
Sbjct: 78 --PYSELAGKTLVMAVYDFDRF------SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE 129
Query: 710 PTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKM 745
+K+G++ ++R+ T+ + + L KM
Sbjct: 130 KEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKM 165
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 109/264 (41%), Gaps = 58/264 (21%)
Query: 438 VNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLFVA--AE 492
V +++A +L + D YVK + + +TK+ + +TL+ V+NE F +E
Sbjct: 23 VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSE 81
Query: 493 PFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLK 552
LV+ V D K +IIG +P++ + D + W +L+ + ++L
Sbjct: 82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV----DFGHVTEEWRDLQSAEKEEQEKLG 137
Query: 553 KEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMK 612
FS R + P+ G L + IL A L M
Sbjct: 138 DICFSLR-------------------------------YVPTAGKLTVVILEAKNLKKM- 165
Query: 613 TRDGRGTSDTYC---VAKYGHKWVRTRTLVDN--LSPKYNEQYTWEV-FD--PATVLTVG 664
D G SD Y + + G + + +T + L+P YNE +++EV F+ + V
Sbjct: 166 --DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT 223
Query: 665 VFDNSQLGEKSNGNKDLKIGKVRI 688
V D ++G K+ IGKV +
Sbjct: 224 VLDYDKIG------KNDAIGKVFV 241
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 37.4 bits (85), Expect = 0.048, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNIS 60
L V ++ +L D G S FV+L+ + +T IK+ LNP +NE F+++I
Sbjct: 39 LIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 61 DASKLHYLTLEAYIYN-NIGDTN 82
S L +L+ +++ +IG +N
Sbjct: 99 H-SDLAKKSLDISVWDYDIGKSN 120
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 274 VRVVKARELPAMDLTGSIDPFVEVKIG---NYKGITKHYEKNQNPQWHQVFAFSRDRMQA 330
+R K + D+ + DP+VE+ I + + T+H+ + NP W++ F F D Q
Sbjct: 25 LRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQE 84
Query: 331 SVLEXXXXXXXXXXXXXXGIVRFDINEV 358
+VLE G F ++ +
Sbjct: 85 NVLEITLMDANYVMDETLGTATFTVSSM 112
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 28 FVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84
+VEL+ R RT ND+NPVWNE+F F I D ++ + L + N + D
Sbjct: 45 YVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDANYVMDET-- 101
Query: 85 SFLGKVCLTGNS 96
LG T +S
Sbjct: 102 --LGTATFTVSS 111
>pdb|3PYC|A Chain A, Crystal Structure Of Human Smurf1 C2 Domain
Length = 132
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG--QRFRTTIKENDLNPVWNESFYFNISD 61
+K+ + V+ A NL KD F ++ DG Q T +N L+P WN+ + +
Sbjct: 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV-- 62
Query: 62 ASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDS 103
K +T+ + + I FLG V L N+ L D+
Sbjct: 63 -GKTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDT 103
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 274 VRVVKARELPAMDLTGSIDPFVEVKIG---NYKGITKHYEKNQNPQWHQVFAFSRDRMQA 330
+R K + D+ + DP+VE+ I + + T+H+ + NP W++ F F D Q
Sbjct: 10 LRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQE 69
Query: 331 SVLE 334
+VLE
Sbjct: 70 NVLE 73
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 28 FVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84
+VEL+ R RT ND+NPVWNE+F F I D ++ + L + N + D
Sbjct: 30 YVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDANYVMDET-- 86
Query: 85 SFLGKVCLTGNS 96
LG T +S
Sbjct: 87 --LGTATFTVSS 96
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNIS 60
L V ++ +L D G S FV+L+ + +T IK+ LNP +NE F+++I
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 61 DASKLHYLTLEAYIYN-NIGDTN 82
S L +L+ +++ +IG +N
Sbjct: 77 H-SDLAKKSLDISVWDYDIGKSN 98
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 36.6 bits (83), Expect = 0.064, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNIS 60
L V ++ +L D G S FV+L+ + +T IK+ LNP +NE F+++I
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 61 DASKLHYLTLEAYIYN-NIGDTN 82
S L +L+ +++ +IG +N
Sbjct: 99 H-SDLAKKSLDISVWDYDIGKSN 120
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 274 VRVVKARELPAMDLTGSIDPFVEVKIG---NYKGITKHYEKNQNPQWHQVFAFSRDRMQA 330
+R K + D+ + DP+VE+ I + + T+H+ + NP W++ F F D Q
Sbjct: 25 LRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQE 84
Query: 331 SVLE 334
+VLE
Sbjct: 85 NVLE 88
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 20 DGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76
D + +VEL+ R RT ND+NPVWNE+F F I D ++ + L + N
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF-ILDPNQENVLEITLMDAN 95
Query: 77 NIGDTNSRSFLGKVCLTGNS 96
+ D LG T +S
Sbjct: 96 YVMDET----LGTATFTVSS 111
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 36.6 bits (83), Expect = 0.081, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYF 57
N L ++ A L P D G + +V+L+ + RT N NPVWNE+ +
Sbjct: 26 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 85
Query: 58 N 58
+
Sbjct: 86 H 86
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTL----SAVWNEDLLF--V 489
++ ++ A+ L P + N D YVK + K+ + +TL + VWNE L + +
Sbjct: 29 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 88
Query: 490 AAEPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADER 531
E + L ++V D G +E IG L + +A++R
Sbjct: 89 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL--KANQR 129
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 36.6 bits (83), Expect = 0.081, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYF 57
N L ++ A L P D G + +V+L+ + RT N NPVWNE+ +
Sbjct: 28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
Query: 58 N 58
+
Sbjct: 88 H 88
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTL----SAVWNEDLLF--V 489
++ ++ A+ L P + N D YVK + K+ + +TL + VWNE L + +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 490 AAEPFEDH-LVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADER 531
E + L ++V D G +E IG L + +A++R
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL--KANQR 131
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKG------ITKHYEKNQNPQWHQVFAF 323
+ V ++KAR L AMD+ G+ DP+V+V + YK T ++N NP +++ FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLM-YKDKRVEKKKTVTKKRNLNPIFNESFAF 74
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 8 VQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKE-----NDLNPVWNESFYFNISDA 62
V ++ A NL D G+S +V+++ + R K+ +LNP++NESF F+I
Sbjct: 20 VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP-T 78
Query: 63 SKLHYLTLEAYIYNNIGDTNSRS-FLGKVCLTGNS 96
KL T+ + + D SR+ +GK+ L+ S
Sbjct: 79 EKLRETTIIITVMDK--DKLSRNDVIGKIYLSWKS 111
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
+L V ++GA +L ++ + +V++YF D + RT + L P WN++F ++
Sbjct: 19 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 78
Query: 60 SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCL 92
+ LE +++ S FLG++ +
Sbjct: 79 VHRREFRERMLEITLWDQARVREEESEFLGEILI 112
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF-----DGQRFRTTIKENDLNPVWNESFYFNI 59
+L V ++GA +L ++ + +V++YF D + RT + L P WN++F ++
Sbjct: 22 QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSP 81
Query: 60 SDASKLHYLTLEAYIYNNIGDTNSRS-FLGKVCL 92
+ LE +++ S FLG++ +
Sbjct: 82 VHRREFRERMLEITLWDQARVREEESEFLGEILI 115
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 438 VNVVEAQDL-VPTEKNHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLF----- 488
VN+ EA+ L E++ D Y+K I +KT++ + +TL ++E F
Sbjct: 26 VNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGIPY 84
Query: 489 VAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIE 525
+ H + DR +D+IIG V+IPLS IE
Sbjct: 85 TQIQELALHFTILSFDRFS--RDDIIGEVLIPLSGIE 119
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 24 SSSAFVELYFDGQRFRTTIKENDLNPVWNESFYF 57
++ A+++++F GQ FRT + N+ NP W + F
Sbjct: 413 ATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDF 446
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 597 ILELGILNAVGLHPMKTRDGRGTSDTYC-VAKYGH-----KWVRTRTLVDNLSPKYNEQY 650
++ + ++ +GL +D G SD Y V Y V+T+T+ +L+PK+NE+
Sbjct: 9 VVRVKVIAGIGL---AKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEI 65
Query: 651 TWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET-----GRIYTHSYPL 705
+ V + VFD ++L +D +G+V + + L T R YT +
Sbjct: 66 LFRVLPQRHRILFEVFDENRL------TRDDFLGQVDVPLYPLPTENPRMERPYT--FKD 117
Query: 706 LVLHPTGVKKMGELHLAIRFS 726
VLHP K + +L ++ +
Sbjct: 118 FVLHPRSHKSRVKGYLRLKMT 138
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 8 VQVVGAHNLLPKDGKGSSSAFVE--LYFDGQRFRTTIK----ENDLNPVWNESFYFNISD 61
V+V+ L KD G+S +V LY T+++ + LNP WNE F +
Sbjct: 12 VKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV-- 69
Query: 62 ASKLHYLTLEAYIYNNIGDTNSRSFLGKV 90
+ H + E + N + FLG+V
Sbjct: 70 LPQRHRILFEVFDENRL---TRDDFLGQV 95
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF------DGQRFRTTIKENDLNPVWNESFYFN 58
KL V V NL+ GS +V +Y G+R +T + + LNPV+++SF F+
Sbjct: 25 KLIVVVHACRNLIAFSEDGSD-PYVRMYLLPDKRRSGRR-KTHVSKKTLNPVFDQSFDFS 82
Query: 59 ISDASKLHYLTLEAYIYNNIG-DTNSRSFLGKVCLT 93
+S ++ TL+ + N+ G + + LGKV +
Sbjct: 83 VS-LPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVA 117
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 597 ILELGILNAVGLHPMKTRDGRGTSDTYC-VAKYGH-----KWVRTRTLVDNLSPKYNEQY 650
I+ + ++ +GL +D G SD Y V Y V+T+T+ +L+PK+NE+
Sbjct: 21 IVRVRVIAGIGL---AKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEI 77
Query: 651 TWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET-----GRIYTHSYPL 705
+ V L VFD ++L +D +G+V + + L T R YT +
Sbjct: 78 LFRVHPQQHRLLFEVFDENRL------TRDDFLGQVDVPLYPLPTENPRLERPYT--FKD 129
Query: 706 LVLHPTGVKKMGELHLAIRFS 726
VLHP K + +L ++ +
Sbjct: 130 FVLHPRSHKSRVKGYLRLKMT 150
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI---GNQVL---KTKICQARTLSAVWNEDLLFV 489
VRV V+ L + D YV+ + N VL +TK + ++L+ WNE++LF
Sbjct: 22 VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSLNPKWNEEILF- 79
Query: 490 AAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPL 521
P + L+ V D +D+ +G+V +PL
Sbjct: 80 RVHPQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 8 VQVVGAHNLLPKDGKGSSSAFVE--LYFDGQRFRTTIK----ENDLNPVWNESFYFNISD 61
V+V+ L KD G+S +V LY T+++ + LNP WNE F +
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVH- 82
Query: 62 ASKLHYLTLEAYIYNNIGDTNSRSFLGKV 90
+ H L E + N + FLG+V
Sbjct: 83 -PQQHRLLFEVFDENRL---TRDDFLGQV 107
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 274 VRVVKARELPAMDLTGSIDPFVEVKIGN-YKGI-----TKHYEKNQNPQWHQVFAFSRDR 327
VRV+ L D+ G+ DP+V V + + G+ TK +K+ NP+W++ F
Sbjct: 24 VRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP 83
Query: 328 MQASVL 333
Q +L
Sbjct: 84 QQHRLL 89
>pdb|2E7Z|A Chain A, Acetylene Hydratase From Pelobacter Acetylenicus
Length = 727
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 48 NPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGK 89
+P W + Y I + + +H +T +Y + + D+N F+GK
Sbjct: 128 SPNWTSAMYMCIGNTAGVHRVTHGSYSFASFADSNCLLFIGK 169
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKG-ITK---HYEKNQ-NPQWHQVFAF 323
L V V+KAR LP D++G DP+V+V + + K I+K H +K N ++++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF 88
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNI 59
L V V A N+ PK G V + F ++ +T +N+LNPVWNE F++
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61
>pdb|2NQ3|A Chain A, Crystal Structure Of The C2 Domain Of Human Itchy
Homolog E3 Ubiquitin Protein Ligase
Length = 173
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 26 SAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHY 67
S +VE+ DGQ +T N +P W + ++ SKLH+
Sbjct: 58 SPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKLHF 99
>pdb|4I3G|A Chain A, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose.
pdb|4I3G|B Chain B, Crystal Structure Of Desr, A Beta-glucosidase From
Streptomyces Venezueale In Complex With D-glucose
Length = 829
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 605 AVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATV---- 660
A L +K R G G + TY + G + T+ NLSP +N+ + E +
Sbjct: 420 AAPLDTIKARAGAGATVTY---ETGEETFGTQIPAGNLSPAFNQGHQLEPGKAGALYDGT 476
Query: 661 LTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTH-SYPLLVL 708
LTV ++ ++ G V++ T+E G++Y S PLL L
Sbjct: 477 LTVPADGEYRIAVRATGG----YATVQLGSHTIEAGQVYGKVSSPLLKL 521
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKK 715
+ LG+K G KDL I K+ + + + +P + P+G KK
Sbjct: 48 TSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK 94
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 456 DVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIG 515
D YV+ Q K+ + + + WNE +F +E + + VG +D+ +G
Sbjct: 32 DPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT-EDDAVG 90
Query: 516 RVIIPLSAI 524
IPL +
Sbjct: 91 EATIPLEPV 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,283,401
Number of Sequences: 62578
Number of extensions: 1213311
Number of successful extensions: 2527
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2389
Number of HSP's gapped (non-prelim): 144
length of query: 1005
length of database: 14,973,337
effective HSP length: 108
effective length of query: 897
effective length of database: 8,214,913
effective search space: 7368776961
effective search space used: 7368776961
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)