Query 045058
Match_columns 1005
No_of_seqs 580 out of 4345
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:26:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08372 PRT_C: Plant phosphor 100.0 3.9E-41 8.5E-46 313.5 15.0 156 850-1005 1-156 (156)
2 COG5038 Ca2+-dependent lipid-b 100.0 1.8E-35 4E-40 342.2 44.8 552 4-727 436-1162(1227)
3 KOG1326 Membrane-associated pr 100.0 2.8E-28 6.1E-33 277.1 19.9 592 5-725 207-1021(1105)
4 COG5038 Ca2+-dependent lipid-b 99.9 3.3E-24 7.1E-29 249.4 35.1 398 267-729 433-843 (1227)
5 KOG1028 Ca2+-dependent phospho 99.9 2.3E-25 4.9E-30 249.9 24.9 222 258-523 157-393 (421)
6 KOG1028 Ca2+-dependent phospho 99.9 8.4E-25 1.8E-29 245.3 23.0 215 4-357 167-393 (421)
7 KOG2059 Ras GTPase-activating 99.9 7.1E-22 1.5E-26 217.8 16.8 245 4-395 5-277 (800)
8 cd08379 C2D_MCTP_PRT_plant C2 99.9 1.2E-21 2.6E-26 181.7 14.9 125 597-721 1-125 (126)
9 KOG2059 Ras GTPase-activating 99.9 9.9E-22 2.1E-26 216.7 16.7 250 435-730 6-280 (800)
10 cd04022 C2A_MCTP_PRT_plant C2 99.9 2.4E-21 5.2E-26 183.4 14.2 127 5-131 1-127 (127)
11 cd04016 C2_Tollip C2 domain pr 99.9 3.8E-21 8.3E-26 177.2 15.0 118 596-725 2-121 (121)
12 cd04019 C2C_MCTP_PRT_plant C2 99.9 6E-21 1.3E-25 184.1 16.2 150 435-585 1-150 (150)
13 cd04016 C2_Tollip C2 domain pr 99.8 4.8E-20 1E-24 169.9 15.0 119 3-129 1-121 (121)
14 KOG1030 Predicted Ca2+-depende 99.8 3.2E-20 6.9E-25 172.9 11.0 118 594-724 4-121 (168)
15 cd08682 C2_Rab11-FIP_classI C2 99.8 1.3E-19 2.9E-24 171.2 13.5 118 598-724 1-126 (126)
16 cd08682 C2_Rab11-FIP_classI C2 99.8 1.5E-19 3.3E-24 170.8 13.7 121 6-127 1-125 (126)
17 cd08379 C2D_MCTP_PRT_plant C2 99.8 5.1E-19 1.1E-23 164.2 13.9 116 5-125 1-125 (126)
18 cd04015 C2_plant_PLD C2 domain 99.8 8.8E-19 1.9E-23 171.0 15.5 124 595-725 6-157 (158)
19 cd04042 C2A_MCTP_PRT C2 domain 99.8 1.2E-18 2.6E-23 163.4 15.5 118 598-726 2-120 (121)
20 cd08378 C2B_MCTP_PRT_plant C2 99.8 9.2E-19 2E-23 163.2 14.5 121 271-395 1-121 (121)
21 cd04019 C2C_MCTP_PRT_plant C2 99.8 8.9E-19 1.9E-23 169.0 14.7 123 597-728 1-134 (150)
22 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.2E-18 2.5E-23 162.6 14.9 119 598-725 2-121 (121)
23 cd08395 C2C_Munc13 C2 domain t 99.8 1E-18 2.2E-23 160.6 12.1 107 5-114 1-114 (120)
24 cd08378 C2B_MCTP_PRT_plant C2 99.8 2.9E-18 6.2E-23 159.9 13.6 115 6-130 2-120 (121)
25 cd08400 C2_Ras_p21A1 C2 domain 99.8 5.9E-18 1.3E-22 159.3 15.6 120 595-727 3-124 (126)
26 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.7E-18 1.2E-22 158.9 15.2 119 5-130 1-120 (121)
27 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 4E-18 8.6E-23 159.0 13.7 117 6-128 2-120 (121)
28 cd08375 C2_Intersectin C2 doma 99.8 7.8E-18 1.7E-22 160.1 15.5 119 592-725 11-135 (136)
29 KOG1030 Predicted Ca2+-depende 99.8 2E-18 4.2E-23 161.0 10.7 118 1-127 3-120 (168)
30 cd08681 C2_fungal_Inn1p-like C 99.8 6.3E-18 1.4E-22 158.1 13.6 117 4-129 1-118 (118)
31 cd08681 C2_fungal_Inn1p-like C 99.8 5.4E-18 1.2E-22 158.5 13.0 116 596-725 1-118 (118)
32 cd04010 C2B_RasA3 C2 domain se 99.8 5.3E-18 1.1E-22 162.4 12.7 109 5-116 1-126 (148)
33 cd08678 C2_C21orf25-like C2 do 99.8 1.3E-17 2.9E-22 157.4 14.9 119 598-727 1-121 (126)
34 cd04027 C2B_Munc13 C2 domain s 99.8 1.3E-17 2.8E-22 157.5 14.7 117 4-127 1-127 (127)
35 cd04046 C2_Calpain C2 domain p 99.8 2.1E-17 4.5E-22 155.9 15.8 122 2-132 1-124 (126)
36 cd08377 C2C_MCTP_PRT C2 domain 99.8 1.9E-17 4.1E-22 155.2 15.3 118 596-725 1-118 (119)
37 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 9.9E-18 2.1E-22 160.4 13.7 120 5-129 1-132 (133)
38 cd08377 C2C_MCTP_PRT C2 domain 99.7 2.3E-17 5.1E-22 154.6 15.4 118 4-129 1-118 (119)
39 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.5E-17 3.2E-22 155.6 13.8 118 6-128 2-120 (121)
40 PF04842 DUF639: Plant protein 99.7 1.3E-17 2.9E-22 187.2 15.7 178 797-999 483-673 (683)
41 cd08376 C2B_MCTP_PRT C2 domain 99.7 2.1E-17 4.5E-22 154.0 14.6 114 597-726 1-115 (116)
42 cd04022 C2A_MCTP_PRT_plant C2 99.7 2.6E-17 5.6E-22 155.8 15.0 119 272-394 2-126 (127)
43 cd08381 C2B_PI3K_class_II C2 d 99.7 1.2E-17 2.5E-22 156.1 12.4 105 3-110 12-121 (122)
44 cd04024 C2A_Synaptotagmin-like 99.7 2E-17 4.3E-22 157.4 14.2 122 4-129 1-128 (128)
45 cd08376 C2B_MCTP_PRT C2 domain 99.7 3.6E-17 7.8E-22 152.4 15.5 115 5-130 1-115 (116)
46 cd08375 C2_Intersectin C2 doma 99.7 3.8E-17 8.2E-22 155.4 15.2 122 268-393 13-135 (136)
47 cd04024 C2A_Synaptotagmin-like 99.7 3.8E-17 8.3E-22 155.4 14.2 122 596-724 1-127 (128)
48 cd08678 C2_C21orf25-like C2 do 99.7 4.6E-17 1E-21 153.7 14.4 118 6-131 1-121 (126)
49 cd08382 C2_Smurf-like C2 domai 99.7 4.9E-17 1.1E-21 152.6 14.2 118 5-127 1-122 (123)
50 cd08381 C2B_PI3K_class_II C2 d 99.7 3.3E-17 7.2E-22 153.0 12.8 108 258-375 5-121 (122)
51 cd08400 C2_Ras_p21A1 C2 domain 99.7 7.5E-17 1.6E-21 151.8 15.3 119 4-131 4-124 (126)
52 cd04050 C2B_Synaptotagmin-like 99.7 3.2E-17 6.8E-22 149.4 12.3 103 5-114 1-104 (105)
53 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 5.5E-17 1.2E-21 152.7 14.2 118 5-127 1-122 (123)
54 KOG1326 Membrane-associated pr 99.7 1.4E-17 2.9E-22 190.8 11.7 399 268-692 204-703 (1105)
55 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 4.9E-17 1.1E-21 153.1 13.5 119 597-724 1-123 (123)
56 cd08677 C2A_Synaptotagmin-13 C 99.7 3E-17 6.6E-22 148.2 11.2 101 593-705 11-118 (118)
57 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 7.2E-17 1.6E-21 154.4 14.3 119 597-725 1-132 (133)
58 cd08677 C2A_Synaptotagmin-13 C 99.7 4.5E-17 9.7E-22 147.1 11.9 108 258-375 4-118 (118)
59 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 8E-17 1.7E-21 150.7 14.1 117 598-724 2-120 (121)
60 cd08691 C2_NEDL1-like C2 domai 99.7 9.9E-17 2.1E-21 151.5 14.7 117 5-127 2-136 (137)
61 cd08391 C2A_C2C_Synaptotagmin_ 99.7 7.2E-17 1.6E-21 151.9 13.8 117 596-725 1-121 (121)
62 cd04036 C2_cPLA2 C2 domain pre 99.7 9.3E-17 2E-21 150.1 14.0 114 5-129 1-117 (119)
63 cd04029 C2A_SLP-4_5 C2 domain 99.7 8E-17 1.7E-21 151.1 13.5 106 593-706 12-125 (125)
64 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.1E-16 2.4E-21 150.6 14.0 115 4-129 1-121 (121)
65 cd04028 C2B_RIM1alpha C2 domai 99.7 6.5E-17 1.4E-21 153.7 12.4 104 596-707 29-138 (146)
66 cd08392 C2A_SLP-3 C2 domain fi 99.7 6.3E-17 1.4E-21 151.9 12.0 107 3-111 14-128 (128)
67 cd08395 C2C_Munc13 C2 domain t 99.7 7.9E-17 1.7E-21 148.2 12.2 100 597-706 1-111 (120)
68 cd08393 C2A_SLP-1_2 C2 domain 99.7 5.7E-17 1.2E-21 152.4 11.5 106 3-111 14-125 (125)
69 cd04028 C2B_RIM1alpha C2 domai 99.7 1.2E-16 2.7E-21 151.8 13.4 107 3-114 28-140 (146)
70 PF11696 DUF3292: Protein of u 99.7 1.1E-16 2.4E-21 179.8 14.6 205 786-996 80-366 (642)
71 cd04017 C2D_Ferlin C2 domain f 99.7 2E-16 4.3E-21 151.2 14.3 124 4-131 1-133 (135)
72 cd08680 C2_Kibra C2 domain fou 99.7 8.6E-17 1.9E-21 149.4 11.4 106 3-110 13-124 (124)
73 cd04046 C2_Calpain C2 domain p 99.7 3.8E-16 8.2E-21 147.3 16.0 120 595-726 2-122 (126)
74 cd04014 C2_PKC_epsilon C2 doma 99.7 3.3E-16 7.2E-21 149.3 15.2 118 1-131 1-130 (132)
75 cd08685 C2_RGS-like C2 domain 99.7 9.7E-17 2.1E-21 148.9 11.0 104 3-110 11-119 (119)
76 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.5E-16 3.1E-21 149.4 11.7 107 2-111 13-125 (125)
77 cd04039 C2_PSD C2 domain prese 99.7 2E-16 4.2E-21 143.9 12.2 96 596-697 1-99 (108)
78 cd04044 C2A_Tricalbin-like C2 99.7 2.3E-16 5.1E-21 149.1 13.3 120 595-726 1-123 (124)
79 cd08394 C2A_Munc13 C2 domain f 99.7 2.1E-16 4.6E-21 144.0 12.2 98 596-707 2-101 (127)
80 cd08388 C2A_Synaptotagmin-4-11 99.7 2.6E-16 5.7E-21 148.3 12.9 109 3-112 15-128 (128)
81 cd04027 C2B_Munc13 C2 domain s 99.7 4.9E-16 1.1E-20 146.7 14.6 121 597-723 2-127 (127)
82 cd08394 C2A_Munc13 C2 domain f 99.7 4.2E-16 9E-21 142.1 13.1 102 269-378 1-102 (127)
83 cd08393 C2A_SLP-1_2 C2 domain 99.7 3.7E-16 8E-21 146.9 12.9 112 258-376 5-125 (125)
84 cd04014 C2_PKC_epsilon C2 doma 99.7 7.3E-16 1.6E-20 146.9 15.1 118 595-727 3-130 (132)
85 cd04031 C2A_RIM1alpha C2 domai 99.7 2.8E-16 6.1E-21 148.7 12.1 106 3-111 15-125 (125)
86 cd04044 C2A_Tricalbin-like C2 99.7 4.4E-16 9.5E-21 147.2 13.1 120 4-131 2-124 (124)
87 cd04010 C2B_RasA3 C2 domain se 99.7 2.4E-16 5.3E-21 151.0 11.4 102 597-709 1-124 (148)
88 cd08688 C2_KIAA0528-like C2 do 99.7 2.7E-16 5.9E-21 144.4 11.2 105 6-112 1-109 (110)
89 cd08392 C2A_SLP-3 C2 domain fi 99.7 7.7E-16 1.7E-20 144.6 14.2 105 435-541 16-128 (128)
90 cd08688 C2_KIAA0528-like C2 do 99.7 3E-16 6.5E-21 144.2 11.1 101 598-706 1-108 (110)
91 cd04013 C2_SynGAP_like C2 doma 99.7 9.7E-16 2.1E-20 145.0 14.7 125 595-729 10-142 (146)
92 cd04036 C2_cPLA2 C2 domain pre 99.7 8.5E-16 1.8E-20 143.6 14.0 113 272-393 2-117 (119)
93 cd08387 C2A_Synaptotagmin-8 C2 99.7 5.3E-16 1.2E-20 146.3 12.5 106 3-111 15-123 (124)
94 cd04041 C2A_fungal C2 domain f 99.7 3.6E-16 7.8E-21 143.9 10.9 104 4-112 1-108 (111)
95 cd08387 C2A_Synaptotagmin-8 C2 99.7 7.3E-16 1.6E-20 145.3 13.3 105 593-706 13-123 (124)
96 cd04015 C2_plant_PLD C2 domain 99.7 1.8E-15 4E-20 147.7 16.4 118 270-393 7-157 (158)
97 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 6.9E-16 1.5E-20 151.2 13.4 110 2-113 25-139 (162)
98 cd04017 C2D_Ferlin C2 domain f 99.7 2E-15 4.3E-20 144.2 16.2 122 270-395 1-133 (135)
99 cd04050 C2B_Synaptotagmin-like 99.7 6.3E-16 1.4E-20 140.8 12.1 102 272-378 2-103 (105)
100 cd08389 C2A_Synaptotagmin-14_1 99.7 6E-16 1.3E-20 145.1 12.2 107 3-112 15-124 (124)
101 cd08373 C2A_Ferlin C2 domain f 99.7 1.4E-15 3E-20 144.0 14.7 116 10-131 2-117 (127)
102 cd08690 C2_Freud-1 C2 domain f 99.7 1.7E-15 3.7E-20 144.9 15.3 123 6-131 4-138 (155)
103 cd08385 C2A_Synaptotagmin-1-5- 99.7 7.5E-16 1.6E-20 145.3 12.7 106 3-111 15-123 (124)
104 cd08386 C2A_Synaptotagmin-7 C2 99.7 7.6E-16 1.7E-20 145.6 12.5 108 3-112 15-125 (125)
105 cd08382 C2_Smurf-like C2 domai 99.7 1.3E-15 2.9E-20 142.8 13.7 118 598-723 2-122 (123)
106 cd04011 C2B_Ferlin C2 domain s 99.7 1.1E-15 2.5E-20 140.8 12.7 104 269-378 3-111 (111)
107 cd08373 C2A_Ferlin C2 domain f 99.7 2.1E-15 4.7E-20 142.7 14.8 114 602-728 2-118 (127)
108 cd04018 C2C_Ferlin C2 domain t 99.6 1.1E-15 2.5E-20 146.5 12.7 104 597-706 1-124 (151)
109 cd04041 C2A_fungal C2 domain f 99.6 7E-16 1.5E-20 142.0 10.7 99 596-706 1-107 (111)
110 cd04043 C2_Munc13_fungal C2 do 99.6 2.9E-15 6.3E-20 141.8 15.2 117 4-131 1-122 (126)
111 cd04030 C2C_KIAA1228 C2 domain 99.6 1.2E-15 2.7E-20 144.6 12.7 107 3-111 15-127 (127)
112 cd08680 C2_Kibra C2 domain fou 99.6 1.2E-15 2.6E-20 141.8 11.9 111 259-375 5-124 (124)
113 cd04051 C2_SRC2_like C2 domain 99.6 1.1E-15 2.4E-20 144.5 11.4 118 5-125 1-125 (125)
114 cd08685 C2_RGS-like C2 domain 99.6 8.9E-16 1.9E-20 142.4 10.0 102 595-705 11-119 (119)
115 cd04039 C2_PSD C2 domain prese 99.6 2.5E-15 5.5E-20 136.6 12.6 93 270-362 1-99 (108)
116 cd08383 C2A_RasGAP C2 domain ( 99.6 3.7E-15 8E-20 139.2 13.8 115 6-129 2-117 (117)
117 cd08390 C2A_Synaptotagmin-15-1 99.6 2.9E-15 6.3E-20 141.2 12.4 107 3-112 13-123 (123)
118 cd04018 C2C_Ferlin C2 domain t 99.6 2.2E-15 4.8E-20 144.5 11.6 106 5-113 1-126 (151)
119 cd08385 C2A_Synaptotagmin-1-5- 99.6 3.8E-15 8.2E-20 140.5 13.1 111 259-376 7-123 (124)
120 cd04032 C2_Perforin C2 domain 99.6 3E-15 6.5E-20 139.2 12.0 94 593-696 25-120 (127)
121 cd04049 C2_putative_Elicitor-r 99.6 3.7E-15 8E-20 140.5 12.6 109 4-114 1-110 (124)
122 cd08521 C2A_SLP C2 domain firs 99.6 3.4E-15 7.5E-20 140.8 12.3 105 3-110 13-123 (123)
123 KOG1011 Neurotransmitter relea 99.6 8.1E-16 1.8E-20 166.9 8.3 120 4-130 295-424 (1283)
124 cd04038 C2_ArfGAP C2 domain pr 99.6 4.6E-15 9.9E-20 141.8 12.1 92 595-696 1-92 (145)
125 cd04049 C2_putative_Elicitor-r 99.6 5.1E-15 1.1E-19 139.6 12.2 102 596-706 1-107 (124)
126 cd04031 C2A_RIM1alpha C2 domai 99.6 6.1E-15 1.3E-19 139.5 12.8 110 259-376 7-125 (125)
127 cd08676 C2A_Munc13-like C2 dom 99.6 3.3E-15 7.2E-20 143.4 11.0 99 2-110 26-153 (153)
128 cd08388 C2A_Synaptotagmin-4-11 99.6 7.8E-15 1.7E-19 138.3 13.4 114 258-376 6-127 (128)
129 cd08406 C2B_Synaptotagmin-12 C 99.6 6.1E-15 1.3E-19 139.7 12.5 88 435-523 16-110 (136)
130 cd04011 C2B_Ferlin C2 domain s 99.6 6.2E-15 1.3E-19 135.8 12.3 107 431-543 1-111 (111)
131 cd04013 C2_SynGAP_like C2 doma 99.6 9.4E-15 2E-19 138.3 13.4 118 4-131 11-140 (146)
132 cd04030 C2C_KIAA1228 C2 domain 99.6 7.8E-15 1.7E-19 139.1 13.0 112 258-376 6-127 (127)
133 cd08407 C2B_Synaptotagmin-13 C 99.6 2.3E-15 5E-20 142.2 9.2 107 593-708 12-126 (138)
134 cd04021 C2_E3_ubiquitin_ligase 99.6 1.1E-14 2.3E-19 137.0 13.6 117 4-127 2-124 (125)
135 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 1.3E-14 2.8E-19 142.3 14.6 131 384-543 1-139 (162)
136 cd08406 C2B_Synaptotagmin-12 C 99.6 5.6E-15 1.2E-19 139.9 11.6 105 3-112 14-123 (136)
137 cd08690 C2_Freud-1 C2 domain f 99.6 1.8E-14 3.8E-19 138.0 15.1 118 598-726 4-137 (155)
138 cd08389 C2A_Synaptotagmin-14_1 99.6 9.3E-15 2E-19 137.1 13.0 111 258-376 6-123 (124)
139 cd08407 C2B_Synaptotagmin-13 C 99.6 1.2E-14 2.6E-19 137.4 13.7 88 435-523 16-112 (138)
140 cd04051 C2_SRC2_like C2 domain 99.6 6.4E-15 1.4E-19 139.2 11.9 117 272-389 2-125 (125)
141 cd04038 C2_ArfGAP C2 domain pr 99.6 1.6E-14 3.5E-19 138.1 14.6 90 4-99 2-91 (145)
142 cd08675 C2B_RasGAP C2 domain s 99.6 5.5E-15 1.2E-19 140.9 11.3 106 6-114 1-122 (137)
143 PLN03008 Phospholipase D delta 99.6 6E-15 1.3E-19 171.0 13.7 126 595-727 13-178 (868)
144 cd04045 C2C_Tricalbin-like C2 99.6 9.5E-15 2.1E-19 136.0 12.1 102 596-707 1-103 (120)
145 cd04043 C2_Munc13_fungal C2 do 99.6 2.9E-14 6.2E-19 135.0 15.5 117 271-395 2-122 (126)
146 cd08386 C2A_Synaptotagmin-7 C2 99.6 1.6E-14 3.4E-19 136.6 12.9 112 258-376 6-124 (125)
147 cd08692 C2B_Tac2-N C2 domain s 99.6 2.3E-14 4.9E-19 132.9 13.4 92 432-524 12-110 (135)
148 cd04040 C2D_Tricalbin-like C2 99.6 1.7E-14 3.7E-19 134.2 12.7 112 6-124 1-113 (115)
149 cd08383 C2A_RasGAP C2 domain ( 99.6 2E-14 4.4E-19 134.2 13.2 112 598-725 2-117 (117)
150 cd08521 C2A_SLP C2 domain firs 99.6 1.4E-14 3.1E-19 136.5 12.1 110 259-375 5-123 (123)
151 cd04040 C2D_Tricalbin-like C2 99.6 2.5E-14 5.4E-19 133.1 13.1 112 598-721 1-114 (115)
152 cd04045 C2C_Tricalbin-like C2 99.6 2.6E-14 5.7E-19 133.0 12.7 104 4-114 1-105 (120)
153 cd08676 C2A_Munc13-like C2 dom 99.6 2.4E-14 5.2E-19 137.5 12.5 100 267-375 25-153 (153)
154 cd08404 C2B_Synaptotagmin-4 C2 99.6 1.1E-14 2.5E-19 139.4 9.5 107 3-114 14-125 (136)
155 cd08384 C2B_Rabphilin_Doc2 C2 99.6 1E-14 2.2E-19 139.4 8.8 106 3-113 12-122 (133)
156 cd08390 C2A_Synaptotagmin-15-1 99.5 5.5E-14 1.2E-18 132.5 13.5 112 259-377 5-123 (123)
157 cd04032 C2_Perforin C2 domain 99.5 3.2E-14 6.8E-19 132.4 11.6 92 268-360 26-119 (127)
158 cd04009 C2B_Munc13-like C2 dom 99.5 3.8E-14 8.3E-19 135.0 11.4 98 3-101 15-120 (133)
159 cd04052 C2B_Tricalbin-like C2 99.5 3.1E-14 6.8E-19 130.9 10.3 101 21-131 9-110 (111)
160 cd08402 C2B_Synaptotagmin-1 C2 99.5 4.8E-14 1E-18 135.2 11.8 107 3-114 14-125 (136)
161 cd08675 C2B_RasGAP C2 domain s 99.5 4.8E-14 1E-18 134.4 11.6 102 272-379 1-122 (137)
162 cd08691 C2_NEDL1-like C2 domai 99.5 1.7E-13 3.6E-18 129.6 15.2 115 272-391 3-136 (137)
163 cd08410 C2B_Synaptotagmin-17 C 99.5 1.9E-14 4.1E-19 137.3 8.6 108 3-114 13-125 (135)
164 KOG0696 Serine/threonine prote 99.5 9.3E-15 2E-19 152.9 6.9 105 435-545 181-291 (683)
165 cd08686 C2_ABR C2 domain in th 99.5 1.5E-13 3.2E-18 123.7 13.7 85 598-692 1-92 (118)
166 cd08692 C2B_Tac2-N C2 domain s 99.5 8.8E-14 1.9E-18 129.0 12.0 105 593-707 11-123 (135)
167 cd04026 C2_PKC_alpha_gamma C2 99.5 8.9E-14 1.9E-18 132.5 12.4 102 596-707 13-121 (131)
168 cd04021 C2_E3_ubiquitin_ligase 99.5 2.1E-13 4.6E-18 128.2 14.8 118 271-391 3-124 (125)
169 cd08408 C2B_Synaptotagmin-14_1 99.5 6.3E-14 1.4E-18 133.5 11.3 107 3-113 14-126 (138)
170 cd04037 C2E_Ferlin C2 domain f 99.5 6.6E-14 1.4E-18 131.4 11.2 90 597-695 1-93 (124)
171 KOG0696 Serine/threonine prote 99.5 7E-15 1.5E-19 153.8 4.6 106 3-113 179-289 (683)
172 cd08405 C2B_Synaptotagmin-7 C2 99.5 3E-14 6.5E-19 136.6 8.6 106 3-113 14-124 (136)
173 cd04026 C2_PKC_alpha_gamma C2 99.5 7.8E-14 1.7E-18 132.9 11.2 107 3-114 12-123 (131)
174 cd00275 C2_PLC_like C2 domain 99.5 2.2E-13 4.8E-18 129.5 14.4 117 4-129 2-127 (128)
175 cd04037 C2E_Ferlin C2 domain f 99.5 9.5E-14 2.1E-18 130.3 11.2 89 272-360 2-93 (124)
176 cd08384 C2B_Rabphilin_Doc2 C2 99.5 4.7E-14 1E-18 134.8 9.3 111 260-379 5-123 (133)
177 cd04009 C2B_Munc13-like C2 dom 99.5 1E-13 2.2E-18 132.1 11.4 95 267-361 13-119 (133)
178 cd08403 C2B_Synaptotagmin-3-5- 99.5 5.9E-14 1.3E-18 134.2 9.7 107 2-113 12-123 (134)
179 cd08402 C2B_Synaptotagmin-1 C2 99.5 2.3E-13 4.9E-18 130.5 13.6 104 433-543 14-124 (136)
180 cd08404 C2B_Synaptotagmin-4 C2 99.5 1.1E-13 2.3E-18 132.7 11.2 103 435-544 16-125 (136)
181 cd04035 C2A_Rabphilin_Doc2 C2 99.5 1.7E-13 3.7E-18 128.9 11.9 98 3-102 14-116 (123)
182 cd08410 C2B_Synaptotagmin-17 C 99.5 1.9E-13 4.1E-18 130.4 12.3 105 434-544 14-125 (135)
183 cd08409 C2B_Synaptotagmin-15 C 99.5 5E-14 1.1E-18 134.5 8.0 106 3-112 14-124 (137)
184 cd08405 C2B_Synaptotagmin-7 C2 99.5 3E-13 6.6E-18 129.6 13.4 90 434-524 15-111 (136)
185 cd08409 C2B_Synaptotagmin-15 C 99.5 3.4E-13 7.4E-18 128.8 13.4 88 435-524 16-110 (137)
186 cd00276 C2B_Synaptotagmin C2 d 99.5 9.9E-14 2.1E-18 133.1 9.6 108 2-114 12-124 (134)
187 KOG1013 Synaptic vesicle prote 99.5 1.6E-14 3.4E-19 147.3 4.1 223 258-522 83-327 (362)
188 cd04052 C2B_Tricalbin-like C2 99.5 2.5E-13 5.5E-18 124.9 11.6 101 287-395 9-110 (111)
189 PLN03200 cellulose synthase-in 99.5 8.8E-14 1.9E-18 176.7 11.4 118 593-726 1977-2100(2102)
190 cd08686 C2_ABR C2 domain in th 99.5 1.9E-13 4.2E-18 123.0 10.1 81 6-96 1-92 (118)
191 KOG1013 Synaptic vesicle prote 99.5 2.8E-14 6.1E-19 145.5 5.1 222 3-356 92-327 (362)
192 cd00276 C2B_Synaptotagmin C2 d 99.5 9.3E-14 2E-18 133.2 8.6 106 593-709 11-124 (134)
193 cd04048 C2A_Copine C2 domain f 99.5 2.7E-13 5.7E-18 126.9 11.3 100 9-112 5-114 (120)
194 cd08403 C2B_Synaptotagmin-3-5- 99.5 5.9E-13 1.3E-17 127.3 13.5 104 433-543 13-123 (134)
195 cd08408 C2B_Synaptotagmin-14_1 99.5 3.2E-13 6.8E-18 128.7 11.1 113 259-379 6-127 (138)
196 cd04048 C2A_Copine C2 domain f 99.5 2.4E-13 5.3E-18 127.1 9.9 96 602-706 6-113 (120)
197 cd00275 C2_PLC_like C2 domain 99.4 2.2E-12 4.8E-17 122.6 14.9 116 270-393 2-127 (128)
198 cd04035 C2A_Rabphilin_Doc2 C2 99.4 1.6E-12 3.5E-17 122.3 11.9 102 258-361 5-114 (123)
199 PLN03008 Phospholipase D delta 99.4 1.6E-12 3.6E-17 151.1 14.2 123 270-398 14-181 (868)
200 cd04047 C2B_Copine C2 domain s 99.3 4.7E-12 1E-16 116.6 10.1 93 7-101 3-102 (110)
201 cd04047 C2B_Copine C2 domain s 99.3 9.3E-12 2E-16 114.6 10.2 87 274-361 4-101 (110)
202 PLN03200 cellulose synthase-in 99.3 5.8E-12 1.3E-16 160.5 11.3 118 4-131 1980-2101(2102)
203 PF00168 C2: C2 domain; Inter 99.3 9.1E-12 2E-16 108.8 9.3 82 6-91 1-85 (85)
204 KOG1328 Synaptic vesicle prote 99.3 7.4E-13 1.6E-17 146.5 -0.1 123 4-131 114-302 (1103)
205 KOG1011 Neurotransmitter relea 99.2 1.4E-11 3E-16 134.6 8.9 121 269-397 294-427 (1283)
206 PF00168 C2: C2 domain; Inter 99.2 3.8E-11 8.2E-16 104.8 10.0 81 272-352 1-85 (85)
207 PF06398 Pex24p: Integral pero 99.2 1.4E-10 3.1E-15 130.4 16.7 177 793-984 2-194 (359)
208 PLN02270 phospholipase D alpha 99.2 6.2E-11 1.3E-15 138.3 13.9 126 595-727 7-149 (808)
209 cd08374 C2F_Ferlin C2 domain s 99.2 1E-10 2.2E-15 108.8 10.6 93 598-697 2-125 (133)
210 cd00030 C2 C2 domain. The C2 d 99.1 4.3E-10 9.4E-15 101.4 10.8 101 6-110 1-102 (102)
211 cd00030 C2 C2 domain. The C2 d 99.1 6E-10 1.3E-14 100.4 10.5 99 598-705 1-102 (102)
212 PLN02223 phosphoinositide phos 99.1 8.8E-10 1.9E-14 123.8 13.6 118 4-129 409-536 (537)
213 PLN02223 phosphoinositide phos 99.1 2E-09 4.2E-14 121.1 14.6 120 595-724 408-535 (537)
214 smart00239 C2 Protein kinase C 99.0 1.2E-09 2.7E-14 98.5 10.7 91 598-697 2-96 (101)
215 cd08374 C2F_Ferlin C2 domain s 99.0 1.9E-09 4.1E-14 100.3 10.3 96 5-101 1-125 (133)
216 PLN02952 phosphoinositide phos 99.0 5.2E-09 1.1E-13 120.5 15.0 120 595-726 469-597 (599)
217 smart00239 C2 Protein kinase C 99.0 4.5E-09 9.8E-14 94.8 11.6 90 272-361 2-95 (101)
218 KOG1031 Predicted Ca2+-depende 99.0 2.2E-09 4.7E-14 116.3 10.4 120 596-726 3-136 (1169)
219 cd08689 C2_fungal_Pkc1p C2 dom 99.0 2.8E-09 6E-14 92.2 8.4 87 598-695 1-88 (109)
220 PLN02952 phosphoinositide phos 98.9 7.8E-09 1.7E-13 119.1 13.8 117 4-128 470-597 (599)
221 KOG1031 Predicted Ca2+-depende 98.9 4.2E-09 9.1E-14 114.2 9.7 121 4-128 3-134 (1169)
222 PLN02230 phosphoinositide phos 98.9 1.2E-08 2.6E-13 117.4 13.3 118 4-129 469-597 (598)
223 PLN02228 Phosphoinositide phos 98.9 1.7E-08 3.6E-13 115.7 14.4 125 595-729 430-564 (567)
224 cd08689 C2_fungal_Pkc1p C2 dom 98.9 6.6E-09 1.4E-13 89.9 8.3 83 6-98 1-87 (109)
225 PLN02270 phospholipase D alpha 98.9 2E-08 4.3E-13 117.8 14.3 122 270-397 8-151 (808)
226 PLN02230 phosphoinositide phos 98.9 1.7E-08 3.7E-13 116.1 13.4 121 595-725 468-597 (598)
227 PLN02222 phosphoinositide phos 98.9 2.6E-08 5.7E-13 114.4 14.7 121 595-725 451-580 (581)
228 KOG0169 Phosphoinositide-speci 98.8 1.2E-08 2.7E-13 116.6 11.4 119 5-131 617-745 (746)
229 KOG1328 Synaptic vesicle prote 98.8 7E-10 1.5E-14 123.4 1.0 124 267-396 111-303 (1103)
230 PLN02222 phosphoinositide phos 98.8 5E-08 1.1E-12 112.2 13.8 117 4-128 452-579 (581)
231 KOG0169 Phosphoinositide-speci 98.8 3.1E-08 6.7E-13 113.5 11.8 120 597-726 617-744 (746)
232 PLN02228 Phosphoinositide phos 98.8 6.3E-08 1.4E-12 111.0 13.7 120 4-131 431-562 (567)
233 KOG1264 Phospholipase C [Lipid 98.7 8.7E-08 1.9E-12 108.4 11.2 102 595-709 1064-1173(1267)
234 KOG1264 Phospholipase C [Lipid 98.7 6.5E-08 1.4E-12 109.4 9.7 101 4-113 1065-1172(1267)
235 KOG1327 Copine [Signal transdu 98.5 7.8E-07 1.7E-11 99.4 13.2 181 466-695 41-236 (529)
236 PLN02352 phospholipase D epsil 98.5 6.2E-07 1.3E-11 105.3 12.6 118 595-728 9-132 (758)
237 KOG1327 Copine [Signal transdu 98.4 2.6E-06 5.7E-11 95.3 13.5 179 304-526 43-236 (529)
238 cd08683 C2_C2cd3 C2 domain fou 98.3 1.6E-06 3.4E-11 77.5 6.2 108 598-705 1-143 (143)
239 PLN02352 phospholipase D epsil 98.2 6.5E-06 1.4E-10 96.9 12.0 116 4-131 10-131 (758)
240 KOG0905 Phosphoinositide 3-kin 98.2 1.7E-06 3.7E-11 102.1 5.7 105 269-378 1523-1636(1639)
241 KOG0905 Phosphoinositide 3-kin 98.2 1.5E-06 3.3E-11 102.5 5.3 109 3-113 1523-1636(1639)
242 PF12416 DUF3668: Cep120 prote 98.1 0.00048 1E-08 74.8 23.2 245 272-527 2-296 (340)
243 cd08683 C2_C2cd3 C2 domain fou 98.0 1.1E-05 2.4E-10 72.2 5.8 105 6-110 1-143 (143)
244 PF12416 DUF3668: Cep120 prote 97.9 0.0054 1.2E-07 66.8 24.9 239 436-695 2-295 (340)
245 KOG3837 Uncharacterized conser 97.6 3.4E-05 7.3E-10 82.0 3.4 125 4-131 367-504 (523)
246 cd08684 C2A_Tac2-N C2 domain f 97.5 9.5E-05 2.1E-09 61.3 4.0 97 7-109 2-102 (103)
247 PLN02964 phosphatidylserine de 97.5 0.00018 4E-09 84.5 7.0 88 594-697 52-141 (644)
248 cd08684 C2A_Tac2-N C2 domain f 97.5 0.00015 3.2E-09 60.2 4.3 95 437-539 2-102 (103)
249 KOG2060 Rab3 effector RIM1 and 97.4 0.00016 3.5E-09 76.5 4.1 107 4-114 269-381 (405)
250 PLN02964 phosphatidylserine de 97.3 0.00038 8.3E-09 81.9 6.6 85 270-361 54-140 (644)
251 KOG2060 Rab3 effector RIM1 and 97.1 0.00039 8.4E-09 73.7 3.3 107 594-707 267-379 (405)
252 KOG3837 Uncharacterized conser 96.5 0.0025 5.3E-08 68.3 3.8 118 271-394 368-503 (523)
253 KOG1265 Phospholipase C [Lipid 96.3 0.015 3.2E-07 68.1 9.3 112 4-131 703-824 (1189)
254 cd08398 C2_PI3K_class_I_alpha 96.0 0.052 1.1E-06 52.7 10.0 107 3-130 7-122 (158)
255 PF15627 CEP76-C2: CEP76 C2 do 95.8 0.13 2.8E-06 49.2 11.4 125 269-396 8-152 (156)
256 cd08693 C2_PI3K_class_I_beta_d 95.6 0.084 1.8E-06 52.3 9.9 73 4-78 8-86 (173)
257 PF08372 PRT_C: Plant phosphor 95.2 0.085 1.8E-06 50.5 8.2 58 797-855 62-119 (156)
258 KOG1265 Phospholipase C [Lipid 95.2 0.069 1.5E-06 62.9 8.9 110 594-724 701-821 (1189)
259 KOG1452 Predicted Rho GTPase-a 95.1 0.044 9.6E-07 56.7 6.3 116 3-131 50-168 (442)
260 PF15627 CEP76-C2: CEP76 C2 do 95.0 0.33 7.1E-06 46.5 11.4 126 594-726 7-150 (156)
261 cd08380 C2_PI3K_like C2 domain 94.7 0.18 3.9E-06 49.4 9.3 109 4-130 8-123 (156)
262 PF10358 NT-C2: N-terminal C2 94.3 0.89 1.9E-05 43.6 13.1 120 4-131 7-136 (143)
263 cd08693 C2_PI3K_class_I_beta_d 94.2 0.26 5.7E-06 48.8 9.3 87 435-524 9-120 (173)
264 cd08398 C2_PI3K_class_I_alpha 93.8 0.41 8.9E-06 46.5 9.5 85 435-524 9-106 (158)
265 cd08687 C2_PKN-like C2 domain 93.7 0.69 1.5E-05 39.4 9.2 83 25-129 9-92 (98)
266 PF10358 NT-C2: N-terminal C2 93.6 1.8 3.9E-05 41.5 13.7 114 596-726 7-135 (143)
267 cd08399 C2_PI3K_class_I_gamma 93.2 0.56 1.2E-05 46.4 9.5 73 4-77 10-87 (178)
268 PF02453 Reticulon: Reticulon; 93.2 0.026 5.6E-07 56.2 0.2 62 925-986 91-152 (169)
269 cd08380 C2_PI3K_like C2 domain 93.0 0.57 1.2E-05 45.8 9.2 88 435-524 9-107 (156)
270 cd08397 C2_PI3K_class_III C2 d 92.9 0.5 1.1E-05 46.1 8.6 91 23-131 28-124 (159)
271 KOG1452 Predicted Rho GTPase-a 92.7 0.24 5.2E-06 51.5 6.2 129 593-743 48-179 (442)
272 cd04012 C2A_PI3K_class_II C2 d 92.6 0.45 9.8E-06 47.2 8.0 112 3-131 7-136 (171)
273 cd08397 C2_PI3K_class_III C2 d 92.0 0.57 1.2E-05 45.7 7.7 70 454-524 29-107 (159)
274 cd04012 C2A_PI3K_class_II C2 d 91.3 0.83 1.8E-05 45.3 8.2 90 435-524 9-119 (171)
275 cd08399 C2_PI3K_class_I_gamma 90.1 1.8 3.8E-05 42.9 9.1 70 435-506 11-88 (178)
276 cd08695 C2_Dock-B C2 domains f 90.0 4.9 0.00011 40.1 12.0 40 37-77 54-93 (189)
277 smart00142 PI3K_C2 Phosphoinos 89.1 2.1 4.6E-05 38.1 8.1 73 5-77 12-90 (100)
278 cd08694 C2_Dock-A C2 domains f 87.0 3.1 6.7E-05 41.6 8.4 40 37-77 54-93 (196)
279 PF00792 PI3K_C2: Phosphoinosi 85.6 3.1 6.6E-05 39.9 7.5 75 39-131 23-102 (142)
280 smart00142 PI3K_C2 Phosphoinos 84.5 5.3 0.00012 35.6 8.0 70 436-506 13-91 (100)
281 cd08687 C2_PKN-like C2 domain 83.1 15 0.00033 31.6 9.4 63 291-358 9-72 (98)
282 PF14429 DOCK-C2: C2 domain in 82.4 4 8.7E-05 41.1 7.2 58 37-95 60-119 (184)
283 PF00792 PI3K_C2: Phosphoinosi 81.9 11 0.00025 36.0 9.8 54 634-693 23-85 (142)
284 PF11618 DUF3250: Protein of u 80.6 5.3 0.00011 36.0 6.4 98 28-130 2-105 (107)
285 cd08694 C2_Dock-A C2 domains f 80.5 15 0.00033 36.8 10.1 54 303-356 54-114 (196)
286 PF14429 DOCK-C2: C2 domain in 80.4 6.6 0.00014 39.5 7.9 58 632-692 60-120 (184)
287 KOG1329 Phospholipase D1 [Lipi 80.3 1.8 4E-05 52.2 4.4 104 618-727 136-241 (887)
288 PF08151 FerI: FerI (NUC094) d 79.8 3.9 8.5E-05 33.7 4.8 49 354-404 2-52 (72)
289 cd08695 C2_Dock-B C2 domains f 79.4 17 0.00037 36.4 10.1 54 303-356 54-112 (189)
290 PF15625 CC2D2AN-C2: CC2D2A N- 77.4 12 0.00025 37.1 8.4 80 620-706 37-123 (168)
291 cd05137 RasGAP_CLA2_BUD2 CLA2/ 76.2 1.1E+02 0.0024 34.7 16.7 45 682-728 1-46 (395)
292 PF11618 DUF3250: Protein of u 75.4 15 0.00033 33.0 7.8 93 623-726 2-105 (107)
293 PF06398 Pex24p: Integral pero 73.7 8.7 0.00019 43.3 7.4 49 916-964 11-62 (359)
294 PTZ00447 apical membrane antig 68.3 56 0.0012 35.2 11.0 111 270-392 58-171 (508)
295 KOG0694 Serine/threonine prote 68.0 1.7 3.7E-05 51.0 -0.0 95 24-131 27-122 (694)
296 KOG3543 Ca2+-dependent activat 67.0 27 0.00059 40.2 8.9 117 597-725 342-458 (1218)
297 PF15625 CC2D2AN-C2: CC2D2A N- 64.0 34 0.00074 33.8 8.3 67 292-359 38-107 (168)
298 cd08696 C2_Dock-C C2 domains f 62.2 33 0.00072 34.1 7.7 62 631-692 54-118 (179)
299 PF06219 DUF1005: Protein of u 62.2 80 0.0017 35.3 11.1 109 619-728 35-169 (460)
300 PTZ00447 apical membrane antig 57.1 1E+02 0.0022 33.3 10.5 110 5-128 59-171 (508)
301 cd08697 C2_Dock-D C2 domains f 52.4 61 0.0013 32.4 7.8 62 631-692 56-123 (185)
302 PF11696 DUF3292: Protein of u 51.3 42 0.00091 39.9 7.4 57 925-984 106-162 (642)
303 cd08696 C2_Dock-C C2 domains f 50.6 33 0.00071 34.1 5.6 40 37-77 55-94 (179)
304 cd08679 C2_DOCK180_related C2 49.9 39 0.00085 33.7 6.2 37 41-78 57-93 (178)
305 cd08697 C2_Dock-D C2 domains f 47.8 45 0.00097 33.4 6.0 41 37-78 57-97 (185)
306 KOG3543 Ca2+-dependent activat 46.9 90 0.002 36.3 8.8 98 5-112 342-441 (1218)
307 cd08679 C2_DOCK180_related C2 46.8 59 0.0013 32.4 6.9 58 633-692 55-115 (178)
308 PF04842 DUF639: Plant protein 43.7 42 0.00091 40.0 5.9 64 917-980 489-555 (683)
309 KOG2419 Phosphatidylserine dec 43.5 4.6 9.9E-05 46.5 -1.8 56 435-492 281-340 (975)
310 PF14909 SPATA6: Spermatogenes 43.1 1.5E+02 0.0032 28.1 8.1 86 272-360 4-101 (140)
311 KOG0904 Phosphatidylinositol 3 41.0 58 0.0013 39.8 6.4 72 3-77 342-421 (1076)
312 PF07162 B9-C2: Ciliary basal 40.9 2.5E+02 0.0055 27.6 10.3 78 598-690 4-101 (168)
313 PF10409 PTEN_C2: C2 domain of 39.1 3.2E+02 0.0069 25.5 10.4 94 3-97 3-97 (134)
314 KOG1792 Reticulon [Intracellul 37.8 1.8E+02 0.004 30.2 8.9 37 926-962 132-168 (230)
315 PF10409 PTEN_C2: C2 domain of 37.2 3.3E+02 0.0072 25.4 10.2 88 436-525 6-98 (134)
316 COG5052 YOP1 Protein involved 36.6 1.8E+02 0.0039 28.6 7.8 92 909-1001 37-151 (186)
317 PF09726 Macoilin: Transmembra 36.2 98 0.0021 38.1 7.7 16 960-975 91-106 (697)
318 PF07162 B9-C2: Ciliary basal 34.6 3.6E+02 0.0078 26.5 10.2 82 6-94 4-101 (168)
319 KOG4027 Uncharacterized conser 34.4 2E+02 0.0043 27.6 7.5 68 618-691 24-109 (187)
320 PF06219 DUF1005: Protein of u 34.4 1.8E+02 0.0039 32.6 8.4 103 291-394 36-167 (460)
321 PF10779 XhlA: Haemolysin XhlA 34.1 2.1E+02 0.0046 23.5 7.1 35 906-940 18-52 (71)
322 KOG1329 Phospholipase D1 [Lipi 33.2 58 0.0012 40.1 4.9 85 291-381 138-225 (887)
323 KOG2419 Phosphatidylserine dec 32.2 13 0.00028 43.0 -0.5 37 24-61 304-340 (975)
324 KOG3142 Prenylated rab accepto 32.1 3.7E+02 0.008 27.0 9.5 73 755-855 18-98 (187)
325 PF14924 DUF4497: Protein of u 28.8 1.4E+02 0.0029 27.2 5.6 64 658-727 28-105 (112)
326 cd05137 RasGAP_CLA2_BUD2 CLA2/ 27.5 72 0.0016 36.2 4.3 16 798-813 193-208 (395)
327 PRK09458 pspB phage shock prot 27.5 1.7E+02 0.0036 24.4 5.1 19 850-868 8-29 (75)
328 PF02453 Reticulon: Reticulon; 26.8 21 0.00046 35.1 0.0 22 934-955 1-22 (169)
329 KOG0904 Phosphatidylinositol 3 25.5 3.1E+02 0.0067 34.0 8.9 109 590-705 338-472 (1076)
330 PHA01159 hypothetical protein 23.3 2.8E+02 0.0061 25.1 6.2 78 910-1000 5-82 (114)
331 KOG4027 Uncharacterized conser 23.1 3.7E+02 0.0081 25.8 7.2 72 23-95 24-109 (187)
332 COG4920 Predicted membrane pro 21.2 7.2E+02 0.016 25.1 9.1 14 976-989 158-171 (249)
333 KOG4269 Rac GTPase-activating 21.1 48 0.001 40.4 1.4 93 4-109 759-865 (1112)
334 PF14186 Aida_C2: Cytoskeletal 20.6 2.7E+02 0.0058 26.7 6.0 71 4-77 13-92 (147)
335 PHA02844 putative transmembran 20.4 2.4E+02 0.0052 23.3 4.7 17 925-941 18-34 (75)
No 1
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=100.00 E-value=3.9e-41 Score=313.48 Aligned_cols=156 Identities=72% Similarity=1.329 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHh
Q 045058 850 LPTVFLYMFLIGIWNYRYRPRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVAT 929 (1005)
Q Consensus 850 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~ 929 (1005)
+|+++++++++++|||+++|+.|+|+|.++|+.+++++||+|||+|..|++++++.+++||+++|+++++|||.+|++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCCCCchhhhhhcCCCCcCCCC
Q 045058 930 QGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPARTDSML 1005 (1005)
Q Consensus 930 ~~e~~~~l~~w~~p~~t~~~~~~~~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~~~~~~~~~~~~r~p~~~~~~~ 1005 (1005)
++||++|+|+|+||.+|++++++|+++++++|++|+|+++++||+|++|||+||.++|+.++|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987
No 2
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=1.8e-35 Score=342.23 Aligned_cols=552 Identities=22% Similarity=0.271 Sum_probs=390.0
Q ss_pred cEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058 4 LKLGVQVVGAHNLLPKD--GKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD 80 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d--~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~ 80 (1005)
|.|.|+|.+|++|...+ .++..|||+++.+.+. ..||+++++++||+|||+|.+.+...+ ..|.++|||.+ .
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~----d~L~LslyD~n-~ 510 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT----DPLNLSLYDFN-S 510 (1227)
T ss_pred EEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC----CceeEEEEecc-c
Confidence 78999999999999887 5789999999998765 689999999999999999999997655 48999999984 4
Q ss_pred CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058 81 TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQ 160 (1005)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (1005)
...|+.+|.+.++|+.|...+.....-+.+.... +..|++...+.|.+-......
T Consensus 511 ~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~---k~vGrL~yDl~ffp~~e~k~~---------------------- 565 (1227)
T COG5038 511 FKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNT---KNVGRLTYDLRFFPVIEDKKE---------------------- 565 (1227)
T ss_pred cCCcceeeeEEechHHhhhccccccceeeeeccC---ccceEEEEeeeeecccCCccc----------------------
Confidence 5699999999999999987765444345443322 457999999988871110000
Q ss_pred CCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCcccccC
Q 045058 161 PVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETS 240 (1005)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (1005)
..+ ..|..
T Consensus 566 ------------------~~~------------------------------------------------------s~e~~ 573 (1227)
T COG5038 566 ------------------LKG------------------------------------------------------SVEPL 573 (1227)
T ss_pred ------------------ccc------------------------------------------------------ccCCc
Confidence 000 00000
Q ss_pred CCCCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee-eeeeeecCCCCCeeee
Q 045058 241 PYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYK-GITKHYEKNQNPQWHQ 319 (1005)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~~~nP~wne 319 (1005)
+ +...|++.+++.++++|.... .....-++++++.++. +.|++++.+.+|.||+
T Consensus 574 e------------------------d~n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~ 628 (1227)
T COG5038 574 E------------------------DSNTGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNL 628 (1227)
T ss_pred c------------------------cCCcceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceeeeccCCceee
Confidence 0 011378999999999997543 1222334889988865 5668899999999999
Q ss_pred EEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEeccCCc
Q 045058 320 VFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADE 399 (1005)
Q Consensus 320 ~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~ 399 (1005)
.+...+.+.....+.+.++|.. ..+.+|+...+|.++... ......||++..+ +|+|.++.++.|....
T Consensus 629 ~~~~~v~~~~ns~~~~~~~d~~--~g~~i~~~~~~l~~li~~----t~dt~~~f~~~~~-----kg~I~~t~~W~Pi~~~ 697 (1227)
T COG5038 629 QYNVLVTDRKNSSIKVVTFDVQ--SGKVIATEGSTLPDLIDR----TLDTFLVFPLRNP-----KGRIFITNYWKPIYNA 697 (1227)
T ss_pred ecceEeccCcceeEEEEecccc--cCceeccccccchHhhhc----cccceEEEEcCCC-----cceEEEEeccceeecc
Confidence 9999999888888999999875 567888888888888764 2345678988843 3889999876653211
Q ss_pred ccccccCCCCCCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCC
Q 045058 400 AFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-QVLKTKICQARTL 478 (1005)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~ 478 (1005)
. ...+..+.....|.++|.|..|.+|.....++.+|||+++.+++ .++||-... .+.
T Consensus 698 ~---------------------~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~-~~~ 755 (1227)
T COG5038 698 G---------------------GSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGS-STL 755 (1227)
T ss_pred c---------------------cccceeeecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEeccc-Ccc
Confidence 0 01122335667889999999999999888899999999999966 677887775 899
Q ss_pred CcccccEEEEEeeCCCCCeEEEEEEeccCCCCCceeEEEEEcccccccccccc---------cccc--------------
Q 045058 479 SAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADER---------IIHS-------------- 535 (1005)
Q Consensus 479 ~P~w~e~f~f~v~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~---------~~~~-------------- 535 (1005)
||.|++....++..+. +.+.+.++|....+.|..+|++.++++++..+.++. ....
T Consensus 756 npiw~~i~Yv~v~sk~-~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit 834 (1227)
T COG5038 756 NPIWNEILYVPVTSKN-QRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTIT 834 (1227)
T ss_pred ccceeeeEEEEecCCc-cEEeeeeecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEE
Confidence 9999999999988764 459999999999999999999999999987632211 0000
Q ss_pred ---eeEEccCCCcc----cc----cc----------ccc-------------------cccc------------------
Q 045058 536 ---RWFNLEKPVAV----DV----DQ----------LKK-------------------EKFS------------------ 557 (1005)
Q Consensus 536 ---~w~~L~~~~~~----~~----~~----------~~~-------------------~~~~------------------ 557 (1005)
+.|+....... .. .+ ..+ ....
T Consensus 835 ~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~s 914 (1227)
T COG5038 835 YKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKS 914 (1227)
T ss_pred EEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccC
Confidence 01111000000 00 00 000 0000
Q ss_pred c--------------ceeEEEeecC-CccccCCCc-------------------ccc------------CC---------
Q 045058 558 S--------------RIHLRVCLDG-GYHVLDEST-------------------HYS------------SD--------- 582 (1005)
Q Consensus 558 ~--------------~i~l~~~l~~-~~~~~~~~~-------------------~~~------------~d--------- 582 (1005)
| .+++.+.++. +|+....+. .|+ .|
T Consensus 915 gv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~ 994 (1227)
T COG5038 915 GVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLP 994 (1227)
T ss_pred CceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccc
Confidence 0 1122222322 221111000 000 00
Q ss_pred ---C------cccc-------cc----cC------------CCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC
Q 045058 583 ---L------RPTA-------KQ----LW------------RPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH 630 (1005)
Q Consensus 583 ---~------~~~~-------~~----~~------------~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~ 630 (1005)
+ +|.. +. .| ..+.|.|.|.+..|.||+. +|.+|.+||||++.+++
T Consensus 995 t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~---~d~ng~sDpfv~~~ln~ 1071 (1227)
T COG5038 995 TLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPS---SDENGYSDPFVKLFLNE 1071 (1227)
T ss_pred hhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEEEEeccCCCcc---cccCCCCCceEEEEecc
Confidence 0 0000 00 00 1347999999999999995 56799999999999987
Q ss_pred E-EEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeec
Q 045058 631 K-WVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVL 708 (1005)
Q Consensus 631 ~-~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 708 (1005)
+ .++|+++++|+||+|||+|+++|.. ..+.++|.|+|||. +.+++.||.+.|+|+.|..+..+....+|..+
T Consensus 1072 k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~------~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk 1145 (1227)
T COG5038 1072 KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDS------GEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGK 1145 (1227)
T ss_pred eecccccchhccCCCCccccceEeeeccccceEEEEEeeccc------CCCccccccccccHhhcCcCCccceeeeccCc
Confidence 7 6899999999999999999999985 58899999999995 44999999999999999999988777887533
Q ss_pred CCCCCceeeEEEEEEEEee
Q 045058 709 HPTGVKKMGELHLAIRFSC 727 (1005)
Q Consensus 709 ~~~~~~~~G~i~l~~~~~~ 727 (1005)
. . ....|.++....|..
T Consensus 1146 ~-~-~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1146 T-F-IVLDGTLHPGFNFRS 1162 (1227)
T ss_pred c-e-EecccEeecceecch
Confidence 3 1 123467766666543
No 3
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.96 E-value=2.8e-28 Score=277.06 Aligned_cols=592 Identities=18% Similarity=0.225 Sum_probs=354.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEe---ccCcc---ccceEEEEEEEeCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNI---SDASK---LHYLTLEAYIYNNI 78 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v---~~~~~---~~~~~l~v~V~d~~ 78 (1005)
.+++.|.+|+.|...|..+.+|||+.|.+.++.+.|-++.+|+||.||++..|.- ...-. .+...+.|+|||.+
T Consensus 207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 4567788999999999999999999999999999999999999999999999872 21111 12346889999996
Q ss_pred CCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058 79 GDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTH 158 (1005)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (1005)
+. +.++|+|++.....-...-+. ..|+++...+ ..+|++.++..++.... +.+-
T Consensus 287 r~-g~~ef~gr~~~~p~V~~~~p~--lkw~p~~rg~---~l~gd~l~a~eliq~~~-----~i~~--------------- 340 (1105)
T KOG1326|consen 287 RS-GINEFKGRKKQRPYVMVQCPA--LKWVPTMRGA---FLDGDVLIAAELIQIGK-----PIPQ--------------- 340 (1105)
T ss_pred hh-chHHhhcccccceEEEecCCc--cceEEeeccc---ccccchhHHHHHHhhcC-----CCCC---------------
Confidence 54 589999998776443333222 2589887654 34566666554333111 0000
Q ss_pred CCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCcccc
Q 045058 159 AQPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKE 238 (1005)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1005)
+. +.+ +...++. ..-
T Consensus 341 ---------------------------------p~----------------~~~-----~~~~~~v-----------p~~ 355 (1105)
T KOG1326|consen 341 ---------------------------------PP----------------PQR-----EIIFSLV-----------PKK 355 (1105)
T ss_pred ---------------------------------CC----------------ccc-----ccceecc-----------ccC
Confidence 00 000 0000000 000
Q ss_pred cCCCCCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecC-CCCCee
Q 045058 239 TSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEK-NQNPQW 317 (1005)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-~~nP~w 317 (1005)
++| ..+.+.+.|-...-+|+..........|-+.+.++++..++..+.+ ..||.+
T Consensus 356 iRp------------------------~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf 411 (1105)
T KOG1326|consen 356 IRP------------------------KTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNF 411 (1105)
T ss_pred CCc------------------------ceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCC
Confidence 111 1123555666666677777777777889999999999988877765 678888
Q ss_pred eeEEEEee-----cCCCCcEEEEEEEeCC-CCCCceeEEEEEE-ceecCCCCCCCCC-----------------------
Q 045058 318 HQVFAFSR-----DRMQASVLEVVIKDKD-LVKDDFVGIVRFD-INEVPLRVPPDSP----------------------- 367 (1005)
Q Consensus 318 ne~f~f~~-----~~~~~~~l~v~V~d~~-~~~d~~lG~~~i~-l~~l~~~~~~~~~----------------------- 367 (1005)
+..+.+-. .+.....+.++|.|.+ +++-..+|.|.+. +.....+......
T Consensus 412 ~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~ 491 (1105)
T KOG1326|consen 412 PSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRH 491 (1105)
T ss_pred ceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhh
Confidence 87666642 2334578999999998 8899999999985 5444432110000
Q ss_pred -----------------CCCeEEEeecCCCCc-------cceEEEEEEEEeccCCc---ccc--cccCCC---------C
Q 045058 368 -----------------LAPEWYRLEDKKGEK-------IKGELMLAVWIGTQADE---AFS--DAWHSD---------A 409 (1005)
Q Consensus 368 -----------------~~~~w~~L~~~~~~~-------~~G~i~l~~~~~~~~d~---~~~--~~~~~~---------~ 409 (1005)
...-|-++....+.. .++..++.++... .+ +|. ..|... .
T Consensus 492 ~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~e--le~v~ef~~l~D~~~~f~l~rG~~~~ 569 (1105)
T KOG1326|consen 492 CNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNME--LEMVAEFRGLQDWAVTFKLYRGKEGL 569 (1105)
T ss_pred ccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEehhh--hhhHHHHhhhhhccceeEeeeccccC
Confidence 001121121111111 1122333332211 11 000 000000 0
Q ss_pred CC----------------C------CCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECCeE
Q 045058 410 AT----------------P------VDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQV 467 (1005)
Q Consensus 410 ~~----------------~------~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~ 467 (1005)
+. | ....+.....++. ..|....++|+|++|-+|.+.|.+|.+||||++.+|++.
T Consensus 570 e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~---~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~ 646 (1105)
T KOG1326|consen 570 ECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPK---EEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKR 646 (1105)
T ss_pred CCcccchhhhhhcceeeecCCCccCCCCChhhhhcccc---cCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccch
Confidence 00 0 0000111111111 235667899999999999999999999999999999976
Q ss_pred E--eeecccCCCCCcccccEEEEEeeCCCCCeEEEEEEeccCCCCCceeEEEEEcccc-cccccccccccceeEEccCCC
Q 045058 468 L--KTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSA-IEKRADERIIHSRWFNLEKPV 544 (1005)
Q Consensus 468 ~--kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~-l~~~~~~~~~~~~w~~L~~~~ 544 (1005)
. +...+. +|+||+|++.|++.+..+.+..+++.|||+|..+.|+.||+..++|+. .....+.+....+-|...+..
T Consensus 647 ~~d~~~yip-~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n 725 (1105)
T KOG1326|consen 647 TLDRAHYIP-NTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGAN 725 (1105)
T ss_pred hhhhhhcCc-CCCCcHHHHHHHhhcccchhhcceeEEEEeecccccchhhceehhhhhcccCcCCcccCccceeeeeccc
Confidence 4 455665 999999999999999999999999999999999999999999999965 222222222222222222111
Q ss_pred ---------ccccc-----------------ccc--------ccccccceeEE-Ee---------ecCCccccCC----C
Q 045058 545 ---------AVDVD-----------------QLK--------KEKFSSRIHLR-VC---------LDGGYHVLDE----S 576 (1005)
Q Consensus 545 ---------~~~~~-----------------~~~--------~~~~~~~i~l~-~~---------l~~~~~~~~~----~ 576 (1005)
..... ..+ ++....+..+. +. +--.++..-+ .
T Consensus 726 ~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetr 805 (1105)
T KOG1326|consen 726 IWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETR 805 (1105)
T ss_pred cccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccc
Confidence 00000 000 00000000000 00 0000000000 0
Q ss_pred ccccCCCccccc----ccC------------------CCcceEEEEEEEEecCCCCCCCCCC--CCCCCcEEEEEE-C--
Q 045058 577 THYSSDLRPTAK----QLW------------------RPSIGILELGILNAVGLHPMKTRDG--RGTSDTYCVAKY-G-- 629 (1005)
Q Consensus 577 ~~~~~d~~~~~~----~~~------------------~~~~g~l~v~i~~a~~L~~~~~~~~--~~~~dpyv~~~~-g-- 629 (1005)
+.+ ++..|-.. ++| ++...-|+|-|..-.+....|. ++ ...+|.||+-.+ |
T Consensus 806 tl~-~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~~lrviiWnt~~v~l~dd-~~~ge~~sdIyv~gw~~gde 883 (1105)
T KOG1326|consen 806 TLH-SKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKYELRVIIWNTDKVRLNDD-EITGEKMSDIYVKGWVLGDE 883 (1105)
T ss_pred ccc-CccccchhhcccchhhhhcccccCCCCCCCCCCChhheeEEEEEeeccceeecCc-cceeeeccceEEecccccch
Confidence 000 00011000 111 2456788998888888776543 23 335899999877 3
Q ss_pred CEEEEeeeccCCC----CceeccEEEEEEe-----------------C-----CCceEEEEEEeCCCcCCCCCCCCCccc
Q 045058 630 HKWVRTRTLVDNL----SPKYNEQYTWEVF-----------------D-----PATVLTVGVFDNSQLGEKSNGNKDLKI 683 (1005)
Q Consensus 630 ~~~~~T~~~~~t~----nP~wne~f~~~v~-----------------~-----~~~~l~i~v~d~~~~~~~~~~~~d~~l 683 (1005)
.++.+|.++++++ |-+|.-.|.|+-. + .-..|.|+|||+|.++ +|++|
T Consensus 884 e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs------~Dd~L 957 (1105)
T KOG1326|consen 884 EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFS------KDDFL 957 (1105)
T ss_pred hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhhhccccccccccCchheEEEecccCccC------hhhhh
Confidence 3467888888764 6777766655310 1 1246999999999888 99999
Q ss_pred EEEEEEcccccC----------------------CCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 684 GKVRIRISTLET----------------------GRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 684 G~~~i~l~~l~~----------------------~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
|..+++|+++.. .+....|||+.........-+|.+++.+.+
T Consensus 958 g~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a~~~~~~~l~Gkvem~lei 1021 (1105)
T KOG1326|consen 958 GALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQAEEGDAKVLAGKVEMSLEI 1021 (1105)
T ss_pred hheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeeecCCCcceecceeeeehhh
Confidence 999999998754 234568999987754444458998888874
No 4
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.94 E-value=3.3e-24 Score=249.43 Aligned_cols=398 Identities=19% Similarity=0.232 Sum_probs=293.1
Q ss_pred cceeEEEEEEEEeecCCCCC--CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-C
Q 045058 267 ERMYFLYVRVVKARELPAMD--LTGSIDPFVEVKIGNY-KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-L 342 (1005)
Q Consensus 267 ~~~~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~~~-~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~ 342 (1005)
...|+|.|+|.+|++|...+ .++..|||+.+...+. ..||++++++.||+|||+|+..+.... +.|.++|||.+ +
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~-d~L~LslyD~n~~ 511 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFT-DPLNLSLYDFNSF 511 (1227)
T ss_pred CeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccC-CceeEEEEecccc
Confidence 35699999999999999888 6899999999997663 469999999999999999999998776 68999999966 8
Q ss_pred CCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEeccCCcccccccCCCCCCCCCCCCccccc
Q 045058 343 VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAV 422 (1005)
Q Consensus 343 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 422 (1005)
.+|+.+|.+.++|..|..+.- ...+.+.+... .+..|++...+.|.|....-....... +.+
T Consensus 512 ~sd~vvG~~~l~L~~L~~~~~----~~ne~~e~~~~--~k~vGrL~yDl~ffp~~e~k~~~~~s~--e~~---------- 573 (1227)
T COG5038 512 KSDKVVGSTQLDLALLHQNPV----KKNELYEFLRN--TKNVGRLTYDLRFFPVIEDKKELKGSV--EPL---------- 573 (1227)
T ss_pred CCcceeeeEEechHHhhhccc----cccceeeeecc--CccceEEEEeeeeecccCCcccccccc--CCc----------
Confidence 899999999999999886532 22223444332 235699999999887543211110000 000
Q ss_pred cccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCCCcccccEEEEEeeCCCCCeEEEE
Q 045058 423 IRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-QVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLT 501 (1005)
Q Consensus 423 ~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~ 501 (1005)
.....|.+.+++.++++|.... ......++++++.. ..+.|+.++ .+.+|.||+++.-.+.+.....+.+.
T Consensus 574 ------ed~n~GI~k~tl~~~~~l~~~~-~~~~~~~a~l~~~~keV~st~~~k-~t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 574 ------EDSNTGILKVTLREVKALDELS-SKKDNKSAELYTNAKEVYSTGKLK-FTNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ------ccCCcceeEEEeeccccccCcc-ccccceeEEEEecceEEeccceee-eccCCceeeecceEeccCcceeEEEE
Confidence 1123578999999999996543 22233348888855 455667776 99999999999999988878889999
Q ss_pred EEeccCCCCCceeEEEEEcccccccccccccccceeEEccCCCccccccccccccccceeEEEeecCCccccCCCccccC
Q 045058 502 VEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSS 581 (1005)
Q Consensus 502 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~ 581 (1005)
+.|.. ..+.||+...+|.++.... .....||++..+. |++.+..+..+-|-..+-
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~~t---~dt~~~f~~~~~k-------------g~I~~t~~W~Pi~~~~~~------ 700 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLIDRT---LDTFLVFPLRNPK-------------GRIFITNYWKPIYNAGGS------ 700 (1227)
T ss_pred ecccc---cCceeccccccchHhhhcc---ccceEEEEcCCCc-------------ceEEEEeccceeeccccc------
Confidence 98864 4678888888888876543 3457899998665 567776654332211100
Q ss_pred CCcccccccCCCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCCce
Q 045058 582 DLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPATV 660 (1005)
Q Consensus 582 d~~~~~~~~~~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~~~ 660 (1005)
++...+..++|.++|.|..|.+|.. ..+.+++|||+++.+++. ++||-....++||.||+....+|..+.+.
T Consensus 701 ----~s~~~~~~pIg~irv~v~~andl~n---~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~~r 773 (1227)
T COG5038 701 ----SSKTVYDTPIGAIRVSVRKANDLRN---EIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQR 773 (1227)
T ss_pred ----cceeeecCccceEEEEeehhhcccc---cccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCccE
Confidence 1112234689999999999999983 456889999999999875 57999999999999999999999999999
Q ss_pred EEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCC---EEeeeE----eeeecCCCCCceeeEEEEEEEEeecc
Q 045058 661 LTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR---IYTHSY----PLLVLHPTGVKKMGELHLAIRFSCTS 729 (1005)
Q Consensus 661 l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~----~L~~~~~~~~~~~G~i~l~~~~~~~~ 729 (1005)
+.++++|.+..+ +|..||.+.|+++++.... .+...+ +.......|.+-.|++.+..+|-+..
T Consensus 774 ~~l~~~~~~~sg------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~ 843 (1227)
T COG5038 774 LTLECMDYEESG------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAV 843 (1227)
T ss_pred Eeeeeecchhcc------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeec
Confidence 999999999777 8999999999999987621 111111 11111112334468999999886543
No 5
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.3e-25 Score=249.90 Aligned_cols=222 Identities=31% Similarity=0.469 Sum_probs=187.8
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeecCCCCCeeeeEEEEeec--CCCCcE
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNY---KGITKHYEKNQNPQWHQVFAFSRD--RMQASV 332 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~~~nP~wne~f~f~~~--~~~~~~ 332 (1005)
.++..|+. +...|.|+|++|++|+..+..|.+||||++++.+. +.+|++.++++||.|||+|.|.+. ++....
T Consensus 157 ~fsl~Yd~--~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~ 234 (421)
T KOG1028|consen 157 QFSLQYDF--ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRV 234 (421)
T ss_pred EEEEEecc--cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCE
Confidence 45666665 45899999999999999997788999999999874 478999999999999999999853 566789
Q ss_pred EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc--cceEEEEEEEEeccCCcccccccCCCC
Q 045058 333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK--IKGELMLAVWIGTQADEAFSDAWHSDA 409 (1005)
Q Consensus 333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~G~i~l~~~~~~~~d~~~~~~~~~~~ 409 (1005)
|.+.|||+| ++++++||++.++|..+... .....|.+|....... ..|+|.++++|.+.
T Consensus 235 L~l~V~~~drfsr~~~iGev~~~l~~~~~~-----~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~------------- 296 (421)
T KOG1028|consen 235 LHLSVYDFDRFSRHDFIGEVILPLGEVDLL-----STTLFWKDLQPSSTDSEELAGELLLSLCYLPT------------- 296 (421)
T ss_pred EEEEEEecCCcccccEEEEEEecCcccccc-----ccceeeeccccccCCcccccceEEEEEEeecC-------------
Confidence 999999999 89999999999999888764 2257799998764322 33799999998763
Q ss_pred CCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCccccc
Q 045058 410 ATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GN---QVLKTKICQARTLSAVWNE 484 (1005)
Q Consensus 410 ~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~---~~~kT~~~~~~t~~P~w~e 484 (1005)
.+.|+|.|++|+||..++.++.+||||++.+ +. .+.+|.+.+ ++.||+|||
T Consensus 297 -----------------------~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~-~~~npv~ne 352 (421)
T KOG1028|consen 297 -----------------------AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKK-KTLNPVFNE 352 (421)
T ss_pred -----------------------CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeeccc-CCCCCcccc
Confidence 2389999999999999999999999999999 22 355677665 999999999
Q ss_pred EEEEEeeCC--CCCeEEEEEEeccCCCCCceeEEEEEcccc
Q 045058 485 DLLFVAAEP--FEDHLVLTVEDRVGPGKDEIIGRVIIPLSA 523 (1005)
Q Consensus 485 ~f~f~v~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~ 523 (1005)
.|.|.+... .+..|.|+|||+|.++.+++||.+.+....
T Consensus 353 sf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 353 TFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred cEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999988654 445799999999999999999999998765
No 6
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.4e-25 Score=245.34 Aligned_cols=215 Identities=30% Similarity=0.444 Sum_probs=179.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD 80 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~ 80 (1005)
..|.|+|++|++|+.+|..|.+||||++++- ..+.+|++.++|+||+|||+|.|.|... .++...|.+.|||.|+
T Consensus 167 ~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~-~l~~~~L~l~V~~~dr- 244 (421)
T KOG1028|consen 167 NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYE-ELSNRVLHLSVYDFDR- 244 (421)
T ss_pred CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHH-HhccCEEEEEEEecCC-
Confidence 5799999999999999977889999999994 3579999999999999999999997543 3677899999999965
Q ss_pred CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcc-eeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058 81 TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFS-HVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHA 159 (1005)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (1005)
++++++||++.++|..+..... ...|.+|....... ...|+|.+++.+.+
T Consensus 245 fsr~~~iGev~~~l~~~~~~~~-~~~w~~l~~~~~~~~~~~gel~~sL~Y~p---------------------------- 295 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDLLST-TLFWKDLQPSSTDSEELAGELLLSLCYLP---------------------------- 295 (421)
T ss_pred cccccEEEEEEecCcccccccc-ceeeeccccccCCcccccceEEEEEEeec----------------------------
Confidence 6799999999999888866554 35799998763221 22268888876544
Q ss_pred CCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCccccc
Q 045058 160 QPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKET 239 (1005)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (1005)
T Consensus 296 -------------------------------------------------------------------------------- 295 (421)
T KOG1028|consen 296 -------------------------------------------------------------------------------- 295 (421)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCC
Q 045058 240 SPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQN 314 (1005)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~n 314 (1005)
..+.|.|.|++|++|..++.++.+||||++.+.. .+.||.+.+++.|
T Consensus 296 ----------------------------~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~n 347 (421)
T KOG1028|consen 296 ----------------------------TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLN 347 (421)
T ss_pred ----------------------------CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCC
Confidence 0156889999999999999999999999999864 3468999999999
Q ss_pred CeeeeEEEEeec--CCCCcEEEEEEEeCC-CCCCceeEEEEEEcee
Q 045058 315 PQWHQVFAFSRD--RMQASVLEVVIKDKD-LVKDDFVGIVRFDINE 357 (1005)
Q Consensus 315 P~wne~f~f~~~--~~~~~~l~v~V~d~~-~~~d~~lG~~~i~l~~ 357 (1005)
|+|||+|.|.+. .+....|.|+|||++ .+++++||.|.+....
T Consensus 348 pv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 348 PVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred CcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999999999865 555678999999999 8888899999998764
No 7
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.88 E-value=7.1e-22 Score=217.83 Aligned_cols=245 Identities=24% Similarity=0.364 Sum_probs=192.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
..|.|+|.+|+||+.++..|..||||.|.++.+ ..||.++.+++.|-|.|.|.|.++..- ..|.|.|||.| .+
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F----~~l~fYv~D~d--~~ 78 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTF----RYLSFYVWDRD--LK 78 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcce----eeEEEEEeccc--cc
Confidence 468999999999999999999999999999886 799999999999999999999996433 58999999985 67
Q ss_pred CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058 83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITHTHAQPV 162 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (1005)
+|+.||.+.|.-.+|.... ..+.|+.|.+-...+.++|+|+|++.+.....
T Consensus 79 ~D~~IGKvai~re~l~~~~-~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~---------------------------- 129 (800)
T KOG2059|consen 79 RDDIIGKVAIKREDLHMYP-GKDTWFSLQPVDPDSEVQGKVHLELALTEAIQ---------------------------- 129 (800)
T ss_pred cccccceeeeeHHHHhhCC-CCccceeccccCCChhhceeEEEEEEeccccC----------------------------
Confidence 9999999999988887666 44689999988777899999999997654100
Q ss_pred CCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCcccccCCC
Q 045058 163 ANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYALKETSPY 242 (1005)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1005)
+
T Consensus 130 -----------------------------~-------------------------------------------------- 130 (800)
T KOG2059|consen 130 -----------------------------S-------------------------------------------------- 130 (800)
T ss_pred -----------------------------C--------------------------------------------------
Confidence 0
Q ss_pred CCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCee----eeeeeecCCCCCeee
Q 045058 243 LGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYK----GITKHYEKNQNPQWH 318 (1005)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~----~kT~~~~~~~nP~wn 318 (1005)
. -+.-++.+++++.+.. ++.+|||+.+...+.. .+|++++++.+|.|+
T Consensus 131 --~-------------------------~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~ 182 (800)
T KOG2059|consen 131 --S-------------------------GLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFD 182 (800)
T ss_pred --C-------------------------cchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchh
Confidence 0 0011122233444443 4559999999987633 589999999999999
Q ss_pred eEEEEeecCC---------------CCcEEEEEEEeCC--CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC
Q 045058 319 QVFAFSRDRM---------------QASVLEVVIKDKD--LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE 381 (1005)
Q Consensus 319 e~f~f~~~~~---------------~~~~l~v~V~d~~--~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 381 (1005)
|.|.|.+... ....|.+++|++. ..+++|+|++.+++..+... .....||.|.....+
T Consensus 183 Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~-----s~p~~W~~Lqp~~~g 257 (800)
T KOG2059|consen 183 EVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQK-----SSPAAWYYLQPRPNG 257 (800)
T ss_pred hheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhc-----cCccceEEEecCCCc
Confidence 9999986544 3356888999954 45699999999999887743 345679999876432
Q ss_pred c------cceEEEEEEEEec
Q 045058 382 K------IKGELMLAVWIGT 395 (1005)
Q Consensus 382 ~------~~G~i~l~~~~~~ 395 (1005)
+ ..|.+++.+.|..
T Consensus 258 ~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 258 EKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred ccCCCCCCccceeeeEEeee
Confidence 2 6789999988753
No 8
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.87 E-value=1.2e-21 Score=181.65 Aligned_cols=125 Identities=66% Similarity=1.099 Sum_probs=108.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN 676 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~ 676 (1005)
.|+|+|++|+||+.+..+|+.|.+||||++++|++++||+++.+++||+|||+|.|.+.++...|.|+|||++.++.+..
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence 48999999999444335677899999999999999999999999999999999999999888899999999986521111
Q ss_pred CCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEE
Q 045058 677 GNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHL 721 (1005)
Q Consensus 677 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 721 (1005)
..+|++||++.|+|+.+..+..+..||+|.....++.++.|+|++
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 237999999999999999999999999999888777778899886
No 9
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.87 E-value=9.9e-22 Score=216.73 Aligned_cols=250 Identities=20% Similarity=0.335 Sum_probs=195.4
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-eEEeeecccCCCCCcccccEEEEEeeCCCCCeEEEEEEeccCCCCCce
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-QVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEI 513 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~V~d~d~~~~d~~ 513 (1005)
.|.|.|.+|+||++.+..|..||||.|.+.. ...+|.++. +++.|.|.|.|.|.+...+ ..|.+.|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F-~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTF-RYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCcce-eeEEEEEeccc-cccccc
Confidence 5899999999999999999999999999965 689999998 9999999999999996544 45999999999 999999
Q ss_pred eEEEEEcccccccccccccccceeEEccCCCccccccccccccccceeEEEeecCCccccCCCccccCCCcccccccCCC
Q 045058 514 IGRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRP 593 (1005)
Q Consensus 514 iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~ 593 (1005)
||.+.|.-.++.... ..+.|+.|..... +...+|++++++.+.... ++
T Consensus 83 IGKvai~re~l~~~~----~~d~W~~L~~VD~-------dsEVQG~v~l~l~~~e~~-------------~~-------- 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYP----GKDTWFSLQPVDP-------DSEVQGKVHLELALTEAI-------------QS-------- 130 (800)
T ss_pred cceeeeeHHHHhhCC----CCccceeccccCC-------ChhhceeEEEEEEecccc-------------CC--------
Confidence 999999988887654 4789999998875 456679999999874321 11
Q ss_pred cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE----EEeeeccCCCCceeccEEEEEEeCC------------
Q 045058 594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW----VRTRTLVDNLSPKYNEQYTWEVFDP------------ 657 (1005)
Q Consensus 594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~----~~T~~~~~t~nP~wne~f~~~v~~~------------ 657 (1005)
..+...++.++++.|.. ++.+||||++...+.+ .+|+++++|.+|.|+|.|.|.+...
T Consensus 131 --~~~~c~~L~~r~~~P~~----~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 131 --SGLVCHVLKTRQGLPII----NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred --CcchhhhhhhcccCcee----CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcc
Confidence 11222333444555543 5669999999986554 4999999999999999999988532
Q ss_pred ----CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCC----ceeeEEEEEEEEeecc
Q 045058 658 ----ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGV----KKMGELHLAIRFSCTS 729 (1005)
Q Consensus 658 ----~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~----~~~G~i~l~~~~~~~~ 729 (1005)
.-.|.+.+|++..+. ..++|+|.+++|+..+........||-|.....+.. .--|.+++.++|+...
T Consensus 205 ~e~~~l~irv~lW~~~~~~-----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~ 279 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLV-----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDH 279 (800)
T ss_pred cCCceeeEEEeeccchhhh-----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeece
Confidence 237889999854322 259999999999999886666789999986543211 1258899999986544
Q ss_pred c
Q 045058 730 F 730 (1005)
Q Consensus 730 ~ 730 (1005)
+
T Consensus 280 V 280 (800)
T KOG2059|consen 280 V 280 (800)
T ss_pred e
Confidence 3
No 10
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=2.4e-21 Score=183.36 Aligned_cols=127 Identities=64% Similarity=1.036 Sum_probs=110.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d 84 (1005)
+|+|+|++|++|..++..|.+||||+|+++++++||+++++++||+|||+|.|.+..+.......|.|.|||++...++|
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d 80 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR 80 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence 48999999999999998899999999999999999999999999999999999997654444568999999985443379
Q ss_pred cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
+|||++.+++.++...+.....||+|++++..++++|+|+|++++++
T Consensus 81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 127 (127)
T cd04022 81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYITD 127 (127)
T ss_pred CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEcC
Confidence 99999999999998655556789999988766678999999998864
No 11
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.86 E-value=3.8e-21 Score=177.20 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=103.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVD-NLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK 674 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~-t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~ 674 (1005)
|.|+|+|++|++|+.. + .|++||||++.+|++.+||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++
T Consensus 2 g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~-- 75 (121)
T cd04016 2 GRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT-- 75 (121)
T ss_pred cEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc--
Confidence 8999999999988743 3 589999999999999999999876 79999999999999876678999999999877
Q ss_pred CCCCCCcccEEEEEEcc-cccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 675 SNGNKDLKIGKVRIRIS-TLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 675 ~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
+|++||.+.|+|. .+..++..+.||+|... ++..+.|+|+|.++|
T Consensus 76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ----CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 58888878999999743 344467999999975
No 12
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=6e-21 Score=184.11 Aligned_cols=150 Identities=68% Similarity=1.144 Sum_probs=129.4
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCcccccEEEEEeeCCCCCeEEEEEEeccCCCCCcee
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVGPGKDEII 514 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~V~d~d~~~~d~~i 514 (1005)
.|+|+|++|+||+..+..|.+||||++.++++..+|+++.+++.||.|||.|.|.+.++..+.|.|.|+|++..+++++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 37999999999999999999999999999999999999863479999999999999877777899999999988889999
Q ss_pred EEEEEcccccccccccccccceeEEccCCCccccccccccccccceeEEEeecCCccccCCCccccCCCcc
Q 045058 515 GRVIIPLSAIEKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRP 585 (1005)
Q Consensus 515 G~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~d~~~ 585 (1005)
|++.|+|+++...........+||+|....+..+ ..+..+.+|++++++++++++++.+++.+|++|++|
T Consensus 81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999998765434456789999998764222 123456789999999999999999999999998875
No 13
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.84 E-value=4.8e-20 Score=169.91 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=99.5
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCC-CCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKEN-DLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT 81 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 81 (1005)
.|.|+|+|++|++|+..+ .|++||||+|.++++++||++..+ +.||+|||+|.|.+.... ..|.|+|||++. +
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~----~~l~~~V~d~d~-~ 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGV----DSIYIEIFDERA-F 74 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCC----cEEEEEEEeCCC-C
Confidence 378999999999988766 789999999999999999998865 899999999999996532 479999999964 5
Q ss_pred CCCcccEEEEEeCCc-ccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 82 NSRSFLGKVCLTGNS-FVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 82 ~~d~~lG~~~i~l~~-l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
++|++||++.|++.. +.. ++..+.||+|.+..+. ...|+|+|++.+
T Consensus 75 ~~dd~iG~~~i~l~~~~~~-g~~~~~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 75 TMDERIAWTHITIPESVFN-GETLDDWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred cCCceEEEEEEECchhccC-CCCccccEeCcCccCC-CCceEEEEEEeC
Confidence 689999999999964 544 4445789999876543 567999999864
No 14
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.82 E-value=3.2e-20 Score=172.87 Aligned_cols=118 Identities=31% Similarity=0.492 Sum_probs=100.6
Q ss_pred cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCC
Q 045058 594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGE 673 (1005)
Q Consensus 594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~ 673 (1005)
.+|.|+|.|.+|.||.. +|..++|||||++++|+++.||+++++++||+|||.|+|.|.+++..|.++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~---rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAI---RDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeee---eccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 46999999999999995 45668999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058 674 KSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIR 724 (1005)
Q Consensus 674 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~ 724 (1005)
.||+||.++|+|..+.... ..+| |......|... |+|.++..
T Consensus 80 -----~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s~d 121 (168)
T KOG1030|consen 80 -----SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLSRD 121 (168)
T ss_pred -----cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEeccc
Confidence 9999999999999988776 3455 54344444433 66555444
No 15
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=1.3e-19 Score=171.17 Aligned_cols=118 Identities=26% Similarity=0.397 Sum_probs=101.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC------CCceEEEEEEeCCCc
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD------PATVLTVGVFDNSQL 671 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~------~~~~l~i~v~d~~~~ 671 (1005)
++|+|++|+||+++ +..|.+||||++.+++..+||+++++++||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~---d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK---GKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC---CCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 57999999999965 457889999999999999999999999999999999999976 367899999999976
Q ss_pred CCCCCCCCCcccEEEEEEccccc--CCCEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058 672 GEKSNGNKDLKIGKVRIRISTLE--TGRIYTHSYPLLVLHPTGVKKMGELHLAIR 724 (1005)
Q Consensus 672 ~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~ 724 (1005)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|+++
T Consensus 78 ~------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 G------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred C------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 6 7999999999999987 566678999998544433445799999873
No 16
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.81 E-value=1.5e-19 Score=170.77 Aligned_cols=121 Identities=24% Similarity=0.383 Sum_probs=101.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccC--ccccceEEEEEEEeCCCCCCC
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDA--SKLHYLTLEAYIYNNIGDTNS 83 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~--~~~~~~~l~v~V~d~~~~~~~ 83 (1005)
++|+|++|+||..++..|.+||||+|++++++++|+++++++||+|||+|.|.+... +......|.|.|||++. .++
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-~~~ 79 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-LGL 79 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-cCC
Confidence 579999999999999999999999999999999999999999999999999998652 11234689999999954 458
Q ss_pred CcccEEEEEeCCcccC-CCCceeeeEecccCC-CcceeeeEEEEEE
Q 045058 84 RSFLGKVCLTGNSFVP-LSDSVVLHYPLEKRG-IFSHVRGELGLKV 127 (1005)
Q Consensus 84 d~~lG~~~i~l~~l~~-~~~~~~~w~~L~~~~-~~~~~~G~i~l~~ 127 (1005)
|++||++.|++.++.. .+.....||+|.++. ...+.+|+|+|++
T Consensus 80 d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 80 DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 9999999999999862 333446899998653 3345789999987
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=5.1e-19 Score=164.16 Aligned_cols=116 Identities=27% Similarity=0.398 Sum_probs=97.8
Q ss_pred EEEEEEEEeec---CCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058 5 KLGVQVVGAHN---LLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT 81 (1005)
Q Consensus 5 ~l~V~v~~a~~---L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 81 (1005)
.|+|+|++|+| |..+|..|.+||||+|++++++.||+++++++||+|||+|.|.+.+.. ..|.|+|||++...
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~----~~l~v~V~d~d~~~ 76 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC----TVLTVGVFDNSQSH 76 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC----CEEEEEEEECCCcc
Confidence 38999999999 888999999999999999999999999999999999999999997644 38999999986532
Q ss_pred -----CCCcccEEEEEeCCcccCCCCceeeeEecccCCC-cceeeeEEEE
Q 045058 82 -----NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI-FSHVRGELGL 125 (1005)
Q Consensus 82 -----~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l 125 (1005)
.+|++||++.+++.++..+.. ...||+|..... ..+..|+|++
T Consensus 77 ~~~~~~~dd~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 77 WKEAVQPDVLIGKVRIRLSTLEDDRV-YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccccCCCCceEEEEEEEHHHccCCCE-EeeEEEeEeCCCCCccCCcEEEe
Confidence 389999999999999877554 458999986532 2345677764
No 18
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.80 E-value=8.8e-19 Score=171.04 Aligned_cols=124 Identities=25% Similarity=0.327 Sum_probs=108.2
Q ss_pred ceEEEEEEEEecCCCCCCCC---------------------------CCCCCCCcEEEEEECCEE-EEeeeccCCCCcee
Q 045058 595 IGILELGILNAVGLHPMKTR---------------------------DGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKY 646 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~---------------------------~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~w 646 (1005)
-|.|.|+|++|++|++||.. ...|.+||||++.+++.. .||+++.++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 39999999999999998721 256789999999998765 59999999999999
Q ss_pred ccEEEEEEeCCCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 647 NEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 647 ne~f~~~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
||.|.|.+.++.+.|.|.|+|++.++ +++||++.|+|+++..+...+.||+|.....+..+..|+|++.++|
T Consensus 86 nE~F~~~~~~~~~~l~~~V~d~d~~~-------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 86 NESFHIYCAHYASHVEFTVKDNDVVG-------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred ceEEEEEccCCCCEEEEEEEeCCCcC-------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999999888889999999998653 6899999999999998888899999986655555556899999998
No 19
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.80 E-value=1.2e-18 Score=163.43 Aligned_cols=118 Identities=25% Similarity=0.368 Sum_probs=104.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN 676 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~ 676 (1005)
|+|+|++|+||+..+ ..|.+||||++.+++ ..++|+++.+++||+|||.|.|.+.++...|.|+|||++.++
T Consensus 2 L~v~v~~a~~L~~~d---~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~---- 74 (121)
T cd04042 2 LDIHLKEGRNLAARD---RGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL---- 74 (121)
T ss_pred eEEEEEEeeCCCCcC---CCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC----
Confidence 789999999999654 468899999999987 578999999999999999999999887889999999999776
Q ss_pred CCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058 677 GNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 677 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
+|++||.+.++|+++..+...+.|++|.... +.+..|+|++.++|+
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~ 120 (121)
T cd04042 75 --TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLT 120 (121)
T ss_pred --CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEEC
Confidence 8999999999999999888888999997433 234579999999985
No 20
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=9.2e-19 Score=163.24 Aligned_cols=121 Identities=71% Similarity=1.177 Sum_probs=107.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEE
Q 045058 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGI 350 (1005)
Q Consensus 271 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~ 350 (1005)
+|.|+|++|+||+.. .+||||++.++++..+|++++++.||+|||+|.|.+..+....|.|+|||++..++++||+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~lG~ 76 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDFLGG 76 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCceeee
Confidence 378999999999877 6899999999999999999999999999999999988777789999999999558999999
Q ss_pred EEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEec
Q 045058 351 VRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGT 395 (1005)
Q Consensus 351 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 395 (1005)
+.+++.++..+.+.++....+||+|....+.+..|+|.|++||++
T Consensus 77 ~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~~ 121 (121)
T cd08378 77 VCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFGT 121 (121)
T ss_pred EEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEecC
Confidence 999999998765545556789999998876568899999999863
No 21
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=8.9e-19 Score=169.02 Aligned_cols=123 Identities=21% Similarity=0.311 Sum_probs=103.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCceeccEEEEEEeCC-CceEEEEEEeCCCcCCC
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVD-NLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGEK 674 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~-t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~~ 674 (1005)
.|+|+|++|+||++++ ..|.+||||++.+|++..+|+++.+ ++||+|||.|+|.+.++ .+.|.|+|+|++.++
T Consensus 1 ~L~V~Vi~A~~L~~~d---~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~-- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSD---KNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN-- 75 (150)
T ss_pred CEEEEEEEeECCCCCC---CCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC--
Confidence 3799999999999764 4689999999999999999999976 69999999999999876 468999999998765
Q ss_pred CCCCCCcccEEEEEEcccccCC----CEEeeeEeeeecCC-----CCCceeeEEEEEEEEeec
Q 045058 675 SNGNKDLKIGKVRIRISTLETG----RIYTHSYPLLVLHP-----TGVKKMGELHLAIRFSCT 728 (1005)
Q Consensus 675 ~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~~~~~~G~i~l~~~~~~~ 728 (1005)
+|++||++.|+|+++..+ .....||+|..... +..+..|+|+|++.|...
T Consensus 76 ----~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 76 ----KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred ----CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 789999999999998653 45689999985542 223457999999999654
No 22
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.79 E-value=1.2e-18 Score=162.55 Aligned_cols=119 Identities=26% Similarity=0.412 Sum_probs=102.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN 676 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~ 676 (1005)
|+|.|++|+||++++ +..|.+||||++.++++ ..+|+++++|+||+|||+|.|++.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 689999999999864 23578999999999876 57999999999999999999999876679999999999776
Q ss_pred CCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 677 GNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 677 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
+|++||++.++|+++..+...+.||+|......+. ..|+|+|+++|
T Consensus 76 --~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 --RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred --CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 89999999999999998887899999985544333 46999999875
No 23
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=1e-18 Score=160.62 Aligned_cols=107 Identities=24% Similarity=0.363 Sum_probs=91.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-------QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
+|+|+|++|+||+.++ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+...+......|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999999887 48999999999732 357899999999999999999999765445667899999998
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
+ ..++|++||++.+++.++...+. ...|++|+++.
T Consensus 80 d-~~~~dd~IG~~~l~l~~~~~~~~-~~~w~~L~~~~ 114 (120)
T cd08395 80 C-FARDDRLVGVTVLQLRDIAQAGS-CACWLPLGRRI 114 (120)
T ss_pred c-ccCCCCEEEEEEEEHHHCcCCCc-EEEEEECcCcc
Confidence 5 45679999999999999987765 46899998764
No 24
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=2.9e-18 Score=159.91 Aligned_cols=115 Identities=30% Similarity=0.376 Sum_probs=98.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCc
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRS 85 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~ 85 (1005)
|.|+|++|+||..+ .+||||+|++++++.+|++++++.||+|||+|.|.+... ....|.|.|||++.. +++
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~---~~~~L~~~v~d~d~~--~~~ 72 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL---QGSTLEVSVWDKDKA--KDD 72 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC---cCCEEEEEEEeCCCC--cCc
Confidence 79999999999887 699999999999999999999999999999999998543 246899999999643 899
Q ss_pred ccEEEEEeCCcccCCC----CceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058 86 FLGKVCLTGNSFVPLS----DSVVLHYPLEKRGIFSHVRGELGLKVYIT 130 (1005)
Q Consensus 86 ~lG~~~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 130 (1005)
+||++.++++++.... .....||+|.+... ++.+|+|+|+++|-
T Consensus 73 ~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 73 FLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred eeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 9999999999986532 23357999998765 58899999999873
No 25
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.77 E-value=5.9e-18 Score=159.34 Aligned_cols=120 Identities=24% Similarity=0.456 Sum_probs=101.4
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCC-ceEEEEEEeCCCcC
Q 045058 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPA-TVLTVGVFDNSQLG 672 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~-~~l~i~v~d~~~~~ 672 (1005)
...|+|+|++|+||++ .+.+||||++.+++.. .||++ +++.||.|||.|.|++..+. ..++|.|||++..+
T Consensus 3 ~~~L~V~Vi~A~~L~~------~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~ 75 (126)
T cd08400 3 VRSLQLNVLEAHKLPV------KHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS 75 (126)
T ss_pred eeEEEEEEEEeeCCCC------CCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC
Confidence 3579999999999985 3468999999998854 68987 56899999999999976543 58999999998766
Q ss_pred CCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058 673 EKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC 727 (1005)
Q Consensus 673 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~ 727 (1005)
+|++||.+.|+|+++..+...+.||+|......+.+..|+|+|.++|..
T Consensus 76 ------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 ------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred ------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998889999998654434455799999999864
No 26
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.77 E-value=5.7e-18 Score=158.86 Aligned_cols=119 Identities=22% Similarity=0.398 Sum_probs=102.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS 83 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~ 83 (1005)
.|+|+|++|+||+.+|..|.+||||++++++ ..++|+++.+++||+|||+|.|.+.+.. ..|.|+|||++. .++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~----~~l~~~v~D~d~-~~~ 75 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT----QPLYIKVFDYDR-GLT 75 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCC----CeEEEEEEeCCC-CCC
Confidence 4899999999999999999999999999988 5789999999999999999999986533 589999999954 458
Q ss_pred CcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058 84 RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT 130 (1005)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 130 (1005)
|++||++.+++.++..... .+.|++|.+++. .+..|+|++.+.+.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~-~~~~~~L~~~~~-~~~~G~l~l~~~~~ 120 (121)
T cd04042 76 DDFMGSAFVDLSTLELNKP-TEVKLKLEDPNS-DEDLGYISLVVTLT 120 (121)
T ss_pred CcceEEEEEEHHHcCCCCC-eEEEEECCCCCC-ccCceEEEEEEEEC
Confidence 9999999999999886554 357999987654 25789999999875
No 27
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.77 E-value=4e-18 Score=158.96 Aligned_cols=117 Identities=26% Similarity=0.431 Sum_probs=99.7
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058 6 LGVQVVGAHNLLPKD-GKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS 83 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~ 83 (1005)
|.|+|++|+||+.++ ..|.+||||.|+++++ .++|+++++|+||+|||+|.|.+.+.. ..|.|.|||++. .++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~----~~l~~~v~d~~~-~~~ 76 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDV-LRR 76 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCC----CEEEEEEEECCC-CCC
Confidence 789999999999874 4678999999999876 689999999999999999999997532 489999999965 468
Q ss_pred CcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058 84 RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVY 128 (1005)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 128 (1005)
|++||++.++++++...+. .+.||+|++....++.+|+|++++.
T Consensus 77 ~~~iG~~~i~l~~l~~~~~-~~~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 77 DSVIGKVAIKKEDLHKYYG-KDTWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred CceEEEEEEEHHHccCCCC-cEeeEEEEccCCCCcccEEEEEEEE
Confidence 9999999999999876544 4689999987555567999999875
No 28
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.77 E-value=7.8e-18 Score=160.08 Aligned_cols=119 Identities=28% Similarity=0.437 Sum_probs=101.4
Q ss_pred CCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCC
Q 045058 592 RPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQ 670 (1005)
Q Consensus 592 ~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~ 670 (1005)
...+|.|+|+|++|+||++++ ..|.+||||++.+++..++|+++++++||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d---~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCN---SNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCC---CCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 357899999999999999754 578899999999999999999999999999999999999875 5789999999997
Q ss_pred cCCCCCCCCCcccEEEEEEcccccC-----CCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 671 LGEKSNGNKDLKIGKVRIRISTLET-----GRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 671 ~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
++ +|++||++.|+|+++.. ......|.++. + +..|+|+|+++|
T Consensus 88 ~~------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 88 FS------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CC------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 66 88999999999999886 23344555552 3 345999999987
No 29
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.76 E-value=2e-18 Score=160.98 Aligned_cols=118 Identities=26% Similarity=0.409 Sum_probs=97.5
Q ss_pred CCCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058 1 MRNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD 80 (1005)
Q Consensus 1 m~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~ 80 (1005)
|.-|.|+|+|++|.||..+|..+++||||++.+++++.||+++++++||+|||.|.|.+.++. ..|.++|||+| .
T Consensus 3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D-~ 77 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKD-T 77 (168)
T ss_pred ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCC-C
Confidence 344899999999999999998899999999999999999999999999999999999998877 59999999995 5
Q ss_pred CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEE
Q 045058 81 TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKV 127 (1005)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 127 (1005)
++.|||||++.|+|..+..... .|+ |......+...|++.++.
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~~---~~~-l~~~~~~gt~~~~v~~s~ 120 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQK---MDY-LKLELLTGTAIGKVLLSR 120 (168)
T ss_pred CCcccccceeeeccHHHHHHhh---hhc-cccccCCCcEeeEEEecc
Confidence 6799999999999998865443 245 443322224456555543
No 30
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.76 E-value=6.3e-18 Score=158.06 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=99.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccC-CCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKE-NDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
|.|+|+|++|+||+.++..|.+||||+|++++++++|+++. +++||+|||+|.|.+.... ...|.|+|||++. .
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~-~- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDK-R- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCC-C-
Confidence 57999999999999999999999999999999999999875 5799999999999996532 3589999999854 3
Q ss_pred CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
+|++||++.+++.++..... ...|++|.+.+ +..|+|++++.|
T Consensus 76 ~~~~iG~~~~~l~~~~~~~~-~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 76 KPDLIGDTEVDLSPALKEGE-FDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred CCcceEEEEEecHHHhhcCC-CCCcEEeccCC---cEeeEEEEEEEC
Confidence 49999999999999865443 35799998654 578999999864
No 31
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.76 E-value=5.4e-18 Score=158.49 Aligned_cols=116 Identities=27% Similarity=0.443 Sum_probs=99.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCceeccEEEEEEeCC-CceEEEEEEeCCCcCC
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVD-NLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGE 673 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~-t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~ 673 (1005)
|.|+|+|++|+||+.. +..+.+||||++.+++...+|+++.+ ++||+|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNK---RKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCC---CcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 7899999999999965 45788999999999998899999865 79999999999999874 67899999999752
Q ss_pred CCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 674 KSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 674 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
.|++||++.++++++..+.....||+|.. ++ +..|+|+|+++|
T Consensus 76 -----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~---~~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -----KPDLIGDTEVDLSPALKEGEFDDWYELTL---KG-RYAGEVYLELTF 118 (118)
T ss_pred -----CCcceEEEEEecHHHhhcCCCCCcEEecc---CC-cEeeEEEEEEEC
Confidence 38999999999999877766789999963 22 356999999976
No 32
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.76 E-value=5.3e-18 Score=162.41 Aligned_cols=109 Identities=23% Similarity=0.332 Sum_probs=89.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEecc------------Cccccc
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISD------------ASKLHY 67 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~------------~~~~~~ 67 (1005)
+|.|+|++|+||.. .+|.+||||+|++.+ ++++|+++++|+||+|||+|.|.+.. .+....
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999988 568999999999976 57899999999999999999999851 122344
Q ss_pred eEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCc
Q 045058 68 LTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIF 116 (1005)
Q Consensus 68 ~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~ 116 (1005)
..|.|.|||++. .++|+|||++.|++.++.........||+|++++..
T Consensus 79 ~~L~i~V~d~~~-~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~ 126 (148)
T cd04010 79 LELRVDLWHASM-GGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEK 126 (148)
T ss_pred EEEEEEEEcCCC-CCCCceeEEEEEecccccccCCcCcceeecCCcccc
Confidence 689999999964 468999999999999987762233579999887543
No 33
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=1.3e-17 Score=157.42 Aligned_cols=119 Identities=20% Similarity=0.313 Sum_probs=101.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC--EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH--KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKS 675 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~--~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~ 675 (1005)
|.|+|++|+||+. ..|.+||||++.+++ +.+||+++.+++||+|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5799999999985 368899999999974 568999999999999999999999766778999999998765
Q ss_pred CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058 676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC 727 (1005)
Q Consensus 676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~ 727 (1005)
+|++||++.++|+++..+.....||+|......+....|+|++++.|..
T Consensus 73 ---~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 73 ---DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred ---CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 7999999999999999887778999997443333445799999999853
No 34
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=1.3e-17 Score=157.50 Aligned_cols=117 Identities=31% Similarity=0.504 Sum_probs=101.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC---
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD--- 80 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~--- 80 (1005)
++|+|+|++|++|+.+|..|.+||||+|++++.+++|+++++++||+|||+|.|.+..+. ..|.|+|||++..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~----~~l~i~v~d~d~~~~~ 76 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS----DRIKVRVWDEDDDIKS 76 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCC----CEEEEEEEECCCCccc
Confidence 479999999999999999999999999999988999999999999999999999985443 4799999998642
Q ss_pred -------CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEE
Q 045058 81 -------TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKV 127 (1005)
Q Consensus 81 -------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 127 (1005)
.+.+++||++.+++.++... ...||+|.+++..+.++|+|.+++
T Consensus 77 ~~~~~~~~~~~~~iG~~~i~l~~~~~~---~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 77 RLKQKFTRESDDFLGQTIIEVRTLSGE---MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred ccceeccccCCCcceEEEEEhHHccCC---CCeEEECccCCCCCcEeEEEEEEC
Confidence 14699999999999887422 347999999887778999999874
No 35
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=2.1e-17 Score=155.88 Aligned_cols=122 Identities=22% Similarity=0.386 Sum_probs=103.2
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058 2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT 81 (1005)
Q Consensus 2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 81 (1005)
+...|+|+|++|++|...+..|.+||||++.+++++++|++++++.||+|||.|.|.+.+.+ ..|.|+|||++. .
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~i~V~d~~~-~ 75 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPR----SPIKIQVWNSNL-L 75 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCC----CEEEEEEEECCC-C
Confidence 35689999999999999998999999999999999999999999999999999999986543 589999999854 3
Q ss_pred CCCcccEEEEEeCCcccCCCCceeeeEecccC--CCcceeeeEEEEEEEEecC
Q 045058 82 NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR--GIFSHVRGELGLKVYITDD 132 (1005)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~--~~~~~~~G~i~l~~~~~~~ 132 (1005)
+|++||++.+++.++.. ....|++|.++ ...+++.|+|.+++.+.++
T Consensus 76 -~d~~lG~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 76 -CDEFLGQATLSADPNDS---QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred -CCCceEEEEEecccCCC---cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 58999999999987532 22368888644 3456789999999988774
No 36
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=1.9e-17 Score=155.22 Aligned_cols=118 Identities=28% Similarity=0.474 Sum_probs=102.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCC
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKS 675 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~ 675 (1005)
|.|+|+|++|+||+.+ +..+.+||||++.+++..++|++++++.||.|||+|.|++.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~---~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAA---DIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCC---CCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 7899999999999965 4467899999999999889999999999999999999999877789999999998765
Q ss_pred CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
++++||++.++|.++..+. ..||+|......+ +..|+|.++++|
T Consensus 75 ---~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 75 ---KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred ---CCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 7899999999999998776 6899997544333 346999999986
No 37
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=9.9e-18 Score=160.41 Aligned_cols=120 Identities=27% Similarity=0.395 Sum_probs=102.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-------EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-------RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.|+|+|++|+||..++..|.+||||+|++.+. +++|+++++++||+|||+|.|.+.... ..|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~----~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPRE----HRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCC----CEEEEEEEEC
Confidence 38999999999999998899999999999764 579999999999999999999986433 4799999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCC-----ceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSD-----SVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
+. .++|++||++.+++.++..... ....||+|+++...++.+|+|++++.|
T Consensus 77 ~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 77 NR-LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CC-CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 54 5689999999999999875432 245799999876666789999999976
No 38
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.75 E-value=2.3e-17 Score=154.58 Aligned_cols=118 Identities=29% Similarity=0.390 Sum_probs=103.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS 83 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~ 83 (1005)
|.|.|+|++|+||+.++..+.+||||+|++++..++|++++++.||.|||+|.|.+.+.. ..|.|+|||++ ..++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~----~~l~~~v~d~~-~~~~ 75 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH----DVLEVTVYDED-KDKK 75 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcC----CEEEEEEEECC-CCCC
Confidence 579999999999999998899999999999999999999999999999999999986432 58999999985 4458
Q ss_pred CcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 84 RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
+++||++.+++.++.... ..||+|.++....+.+|+|.+++.+
T Consensus 76 ~~~iG~~~~~l~~~~~~~---~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 76 PEFLGKVAIPLLSIKNGE---RKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred CceeeEEEEEHHHCCCCC---ceEEECcccCCCCceeeEEEEEEEe
Confidence 999999999999886433 3699999876666789999999875
No 39
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=1.5e-17 Score=155.63 Aligned_cols=118 Identities=25% Similarity=0.347 Sum_probs=100.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d 84 (1005)
|.|+|++|++|..++..|.+||||+|.+++. ..||+++++++||+|||.|.|.+.... ..|.|.|||++. .+.|
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~----~~l~v~v~d~~~-~~~d 76 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGF----HTVSFYVLDEDT-LSRD 76 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCC----CEEEEEEEECCC-CCCC
Confidence 7899999999999999999999999999876 479999999999999999999986533 489999999954 4689
Q ss_pred cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058 85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVY 128 (1005)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 128 (1005)
++||++.+++.++...+...+.|++|++........|+|++.+.
T Consensus 77 ~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 77 DVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999999998886544445689999876544567899999874
No 40
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=99.75 E-value=1.3e-17 Score=187.24 Aligned_cols=178 Identities=19% Similarity=0.278 Sum_probs=150.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHhcccc--hHHHHHHHHHHHhhhcccc-CCCCCC
Q 045058 797 RRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPEL--ILPTVFLYMFLIGIWNYRY-RPRYPP 873 (1005)
Q Consensus 797 ~~~k~n~~rl~~~~~~~~~~~~~~~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~~~~~~~~~~~~-~~~~~~ 873 (1005)
..+-+|+..+++++.|+..+..+++.+.+|++|.+|+.|++++.+++|..|+ ++|.++++++++|+|.... +.
T Consensus 483 eGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~---- 558 (683)
T PF04842_consen 483 EGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRL---- 558 (683)
T ss_pred cCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----
Confidence 4456799999999999999999999999999999999999999999999888 6999999999999984332 11
Q ss_pred CCCcccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHhhccccCCchhHHHHHHHH
Q 045058 874 HMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFC 953 (1005)
Q Consensus 874 ~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~~ 953 (1005)
+..-+++...+++..+ ..+++-++|+.+.++++.|++++.++.|+|+++.|..|++|..+++++
T Consensus 559 --------------g~~~~~v~V~~pP~~n--TvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~L 622 (683)
T PF04842_consen 559 --------------GKSFGEVTVRDPPPKN--TVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALAL 622 (683)
T ss_pred --------------CCccceEEecCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 2223333333333333 449999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCCCC----------chhhhhhcCCC
Q 045058 954 LVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPS----------VPINFFRRLPA 999 (1005)
Q Consensus 954 ~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~~~~~----------~~~~~~~r~p~ 999 (1005)
+++++++.++|+||++++..+. .|++.+|. ++..|+-++|-
T Consensus 623 l~~A~~LavvP~kyil~~v~l~-----~FTre~~~Rr~s~er~~RRlrEWW~sIPA 673 (683)
T PF04842_consen 623 LGLAAVLAVVPFKYILLFVFLE-----VFTRESPFRRESSERFNRRLREWWDSIPA 673 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHhccCCCchhhHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999998 66665553 36777777874
No 41
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.75 E-value=2.1e-17 Score=154.03 Aligned_cols=114 Identities=25% Similarity=0.435 Sum_probs=101.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCCcCCCC
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGEKS 675 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~~~ 675 (1005)
.|+|+|++|+||+..+ ..+.+||||++.+++...+|+++++|+||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~~~V~v~~a~~L~~~~---~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMD---DNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCCC---CCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 3789999999999754 467899999999999999999999999999999999999876 689999999998765
Q ss_pred CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058 676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
+|++||++.++|+++..+.....||+|.. ..|+|++++.++
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 75 ---KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred ---CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 89999999999999999888899999961 139999988763
No 42
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.74 E-value=2.6e-17 Score=155.79 Aligned_cols=119 Identities=29% Similarity=0.420 Sum_probs=102.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCC---CcEEEEEEEeCC-CC-CCc
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQ---ASVLEVVIKDKD-LV-KDD 346 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~---~~~l~v~V~d~~-~~-~d~ 346 (1005)
|.|+|++|++|+..+..|.+||||++++++++++|++++++.||.|||.|.|.+.+.. ...|.|+|||++ ++ +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 7899999999999998899999999999999999999999999999999999986432 368999999998 55 799
Q ss_pred eeEEEEEEceecCCCCCCCCCCCCeEEEeecCCC-CccceEEEEEEEEe
Q 045058 347 FVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG-EKIKGELMLAVWIG 394 (1005)
Q Consensus 347 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~G~i~l~~~~~ 394 (1005)
+||++.+++.++... .....+||+|..+.. .+.+|+|.|++++.
T Consensus 82 ~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 999999999999732 245789999987542 23789999999874
No 43
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.74 E-value=1.2e-17 Score=156.07 Aligned_cols=105 Identities=24% Similarity=0.339 Sum_probs=89.8
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|.|+|++|+||+.++ .|.+||||+|++. ..++||+++++++||+|||+|.|.+...+.+....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 468999999999999999 8999999999995 3478999999999999999999997333345667999999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL 110 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 110 (1005)
+. .+++++||++.++|.++..... ...||+|
T Consensus 91 d~-~~~~~~lG~~~i~l~~l~~~~~-~~~W~~L 121 (122)
T cd08381 91 DS-LVENEFLGGVCIPLKKLDLSQE-TEKWYPL 121 (122)
T ss_pred CC-CcCCcEEEEEEEeccccccCCC-ccceEEC
Confidence 64 5689999999999999876543 3579998
No 44
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.74 E-value=2e-17 Score=157.37 Aligned_cols=122 Identities=28% Similarity=0.333 Sum_probs=103.0
Q ss_pred cEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDG--KGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT 81 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 81 (1005)
|.|+|+|++|+||..++. .|.+||||+|.+++++++|+++++++||+|||+|.|.+... ....|.|+|||++. .
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~---~~~~l~i~v~d~~~-~ 76 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSA---QNQLLKLILWDKDR-F 76 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCC---CCCEEEEEEEECCC-C
Confidence 579999999999999888 88999999999999999999999999999999999999652 23689999999964 4
Q ss_pred CCCcccEEEEEeCCcccCC--CCceeeeEecccCC--CcceeeeEEEEEEEE
Q 045058 82 NSRSFLGKVCLTGNSFVPL--SDSVVLHYPLEKRG--IFSHVRGELGLKVYI 129 (1005)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~ 129 (1005)
+.+++||++.+++.++... ......||+|.+.. ....++|+|+|++.|
T Consensus 77 ~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 77 AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 5899999999999998632 23345899998763 234679999999864
No 45
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=3.6e-17 Score=152.41 Aligned_cols=115 Identities=23% Similarity=0.405 Sum_probs=99.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d 84 (1005)
.|+|+|++|+||+.++..|.+||||++++++++++|+++++|+||.|||+|.|.+.... ...|.|+|||++. .++|
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~v~v~d~~~-~~~~ 76 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQ---SQILEIEVWDKDT-GKKD 76 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCC---CCEEEEEEEECCC-CCCC
Confidence 37899999999999998899999999999999999999999999999999999986542 3689999999954 4689
Q ss_pred cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058 85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT 130 (1005)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 130 (1005)
++||++.+++.++..... ...|++|++. +|++++.+.+.
T Consensus 77 ~~iG~~~~~l~~l~~~~~-~~~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 77 EFIGRCEIDLSALPREQT-HSLELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred CeEEEEEEeHHHCCCCCc-eEEEEEccCC------CcEEEEEEEec
Confidence 999999999999876544 4689999854 48998887654
No 46
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=3.8e-17 Score=155.37 Aligned_cols=122 Identities=23% Similarity=0.410 Sum_probs=103.6
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCc
Q 045058 268 RMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDD 346 (1005)
Q Consensus 268 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~ 346 (1005)
..|.|+|+|++|++|+..+..|.+||||+++++++.++|++++++.||.|||+|.|.+.+.....|.|+|||++ +++|+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCC
Confidence 45899999999999999998999999999999999999999999999999999999998777789999999999 77899
Q ss_pred eeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEE
Q 045058 347 FVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWI 393 (1005)
Q Consensus 347 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 393 (1005)
+||++.+++.++............+|..|... .+|+|++++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~----~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHEV----PTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEeccccc----cceeEEEEEEe
Confidence 99999999999986322222334456666432 46999999875
No 47
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.73 E-value=3.8e-17 Score=155.38 Aligned_cols=122 Identities=22% Similarity=0.403 Sum_probs=102.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCcCCC
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQLGEK 674 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~~~~ 674 (1005)
|.|+|+|++|+||++.+. .+.+.+||||++.+++..++|+++++++||.|||.|.|++.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 789999999999996542 126789999999999999999999999999999999999987 5789999999998765
Q ss_pred CCCCCCcccEEEEEEcccccC---CCEEeeeEeeeecCCC-CCceeeEEEEEEE
Q 045058 675 SNGNKDLKIGKVRIRISTLET---GRIYTHSYPLLVLHPT-GVKKMGELHLAIR 724 (1005)
Q Consensus 675 ~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~-~~~~~G~i~l~~~ 724 (1005)
++++||.+.|+|.++.. ......||+|...... .....|+|+|++.
T Consensus 78 ----~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 78 ----GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred ----CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 78999999999999873 3446799999855332 2234799999885
No 48
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.73 E-value=4.6e-17 Score=153.71 Aligned_cols=118 Identities=25% Similarity=0.408 Sum_probs=100.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC--eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDG--QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS 83 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~ 83 (1005)
|.|+|++|+||+. ..|.+||||++++++ ++++|+++++++||+|||.|.|.+... ...|.|+|||++. .++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~~~-~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN----SKELLFEVYDNGK-KSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC----CCEEEEEEEECCC-CCC
Confidence 6799999999987 678999999999974 578999999999999999999998542 2579999999964 458
Q ss_pred CcccEEEEEeCCcccCCCCceeeeEecccCCC-cceeeeEEEEEEEEec
Q 045058 84 RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI-FSHVRGELGLKVYITD 131 (1005)
Q Consensus 84 d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~ 131 (1005)
|++||++.+++.++...... ..|++|.++.. ....+|+|.+++.|.+
T Consensus 74 ~~~lG~~~i~l~~l~~~~~~-~~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 74 SKFLGLAIVPFDELRKNPSG-RQIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred CceEEEEEEeHHHhccCCce-eEEEEecCCCCCCCCcceEEEEEEEEec
Confidence 99999999999998766544 47999987633 3467999999999987
No 49
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.73 E-value=4.9e-17 Score=152.59 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=99.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFD-GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS 83 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~ 83 (1005)
.|+|+|++|++|..++..|.+||||+++++ .+.++|+++++++||+|||+|.|.+.. ...|.|+|||++.....
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~ 75 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKK 75 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCC
Confidence 389999999999999989999999999997 568999999999999999999999954 25899999999654432
Q ss_pred -CcccEEEEEeCCcccCCCCceeeeEecccCCC--cceeeeEEEEEE
Q 045058 84 -RSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI--FSHVRGELGLKV 127 (1005)
Q Consensus 84 -d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~--~~~~~G~i~l~~ 127 (1005)
|++||++.+++.++.........|++|++.+. ...+.|+|.+++
T Consensus 76 ~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 76 DQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 68999999999998765544456999976543 457799999876
No 50
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.73 E-value=3.3e-17 Score=153.00 Aligned_cols=108 Identities=30% Similarity=0.536 Sum_probs=93.2
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEee---cCCC
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSR---DRMQ 329 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~---~~~~ 329 (1005)
.++..|+ .+.|.|+|++|+||+..+ ++.+||||++++.+ .+.||++++++.||.|||+|.|.+ .++.
T Consensus 5 ~~~l~y~----~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~ 79 (122)
T cd08381 5 KLSISYK----NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQ 79 (122)
T ss_pred EEEEEEe----CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhC
Confidence 4566666 478999999999999999 89999999999974 457899999999999999999986 3456
Q ss_pred CcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058 330 ASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL 375 (1005)
Q Consensus 330 ~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 375 (1005)
...|.|+|||++ ++++++||++.++|.++..+ .....||+|
T Consensus 80 ~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~-----~~~~~W~~L 121 (122)
T cd08381 80 QRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLS-----QETEKWYPL 121 (122)
T ss_pred CCEEEEEEEeCCCCcCCcEEEEEEEeccccccC-----CCccceEEC
Confidence 679999999999 77899999999999999864 346789987
No 51
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.73 E-value=7.5e-17 Score=151.81 Aligned_cols=119 Identities=19% Similarity=0.268 Sum_probs=97.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
+.|+|+|++|+||+.+ +.+||||.|++++. ..||+++ +++||+|||+|.|.+..++ ...+.|.|||++. .+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~-~~ 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAK-RS 75 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCC-CC
Confidence 5799999999999874 47899999999885 4788875 6899999999999865433 1368899999864 46
Q ss_pred CCcccEEEEEeCCcccCCCCceeeeEecccCCC-cceeeeEEEEEEEEec
Q 045058 83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI-FSHVRGELGLKVYITD 131 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~ 131 (1005)
+|++||++.++|.++...+. .+.||+|.+.+. .....|+|++++.|.+
T Consensus 76 ~d~~iG~v~i~l~~l~~~~~-~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 KDSEIAEVTVQLSKLQNGQE-TDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCeEEEEEEEHhHccCCCc-ccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 89999999999999877554 468999988753 3467899999999876
No 52
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.73 E-value=3.2e-17 Score=149.35 Aligned_cols=103 Identities=25% Similarity=0.359 Sum_probs=90.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d 84 (1005)
.|.|+|++|+||+..+..+.+||||+|++++++++|++++++.||+|||+|.|.+.+++ ...|.|+|||++. +
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----~ 73 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----G 73 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC----C
Confidence 48999999999999988899999999999999999999999999999999999997643 3589999999852 8
Q ss_pred cccEEEEEeCCcccCCC-CceeeeEecccCC
Q 045058 85 SFLGKVCLTGNSFVPLS-DSVVLHYPLEKRG 114 (1005)
Q Consensus 85 ~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~ 114 (1005)
++||++.++|.++.... ...+.||+|.+++
T Consensus 74 ~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 74 KSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 89999999999987543 3456899998754
No 53
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.73 E-value=5.5e-17 Score=152.73 Aligned_cols=118 Identities=27% Similarity=0.450 Sum_probs=99.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d 84 (1005)
+|+|+|++|++|..++..|.+||||+|++++.+++|+++++++||+|||+|.|.+.... ...|.|+|||++. .+++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~-~~~~ 76 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDL-VSKN 76 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCC-CCCC
Confidence 58999999999999998889999999999999999999999999999999999986543 3579999999954 5589
Q ss_pred cccEEEEEeCCcccCCCCceeeeEecccCCC----cceeeeEEEEEE
Q 045058 85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGI----FSHVRGELGLKV 127 (1005)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~----~~~~~G~i~l~~ 127 (1005)
++||++.+++.++...+.. ..||.|.+... ..+..|.|++.|
T Consensus 77 ~~iG~~~~~l~~l~~~~~~-~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 77 DFLGKVVFSIQTLQQAKQE-EGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred cEeEEEEEEHHHcccCCCC-CCEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999999998764433 57999986532 235679988876
No 54
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.72 E-value=1.4e-17 Score=190.80 Aligned_cols=399 Identities=19% Similarity=0.222 Sum_probs=254.8
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCC---------CCcEEEEEEE
Q 045058 268 RMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM---------QASVLEVVIK 338 (1005)
Q Consensus 268 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~---------~~~~l~v~V~ 338 (1005)
....+++.+.+|+.|...+..+.+|||+.+...++...|.++.+|+||.|+++..|.-.+. .-..+.++||
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y 283 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY 283 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence 3456889999999999999999999999999999999999999999999999999963221 1256889999
Q ss_pred eCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEeccCCcccccccCCCCCCCCCCCC
Q 045058 339 DKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTP 417 (1005)
Q Consensus 339 d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 417 (1005)
|.+ .+.++++|.+.....-... +..-.|+++..... ..|++.++.....++- +-.+ |.....
T Consensus 284 d~dr~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg~~--l~gd~l~a~eliq~~~---~i~~------p~~~~~ 346 (1105)
T KOG1326|consen 284 DLDRSGINEFKGRKKQRPYVMVQ------CPALKWVPTMRGAF--LDGDVLIAAELIQIGK---PIPQ------PPPQRE 346 (1105)
T ss_pred hhhhhchHHhhcccccceEEEec------CCccceEEeecccc--cccchhHHHHHHhhcC---CCCC------CCcccc
Confidence 999 7899999998876543332 23567898876543 3476666543222211 0111 111111
Q ss_pred ccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCcccccEEEE-EeeCC---
Q 045058 418 AITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLF-VAAEP--- 493 (1005)
Q Consensus 418 ~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~~P~w~e~f~f-~v~~~--- 493 (1005)
.....+...+....+.+.+.|-...-+|+..........|-+-+.+|++..++..+...-.||.|...+.+ .+..+
T Consensus 347 ~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e 426 (1105)
T KOG1326|consen 347 IIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEE 426 (1105)
T ss_pred cceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchH
Confidence 12222222222334556666666666776666666678899999999999999888656678888876654 33333
Q ss_pred -CCCeEEEEEEeccCCCCCceeEEEEEccc-ccccc-ccc-----------------------ccccceeEEccCCCccc
Q 045058 494 -FEDHLVLTVEDRVGPGKDEIIGRVIIPLS-AIEKR-ADE-----------------------RIIHSRWFNLEKPVAVD 547 (1005)
Q Consensus 494 -~~~~l~i~V~d~d~~~~d~~iG~~~i~l~-~l~~~-~~~-----------------------~~~~~~w~~L~~~~~~~ 547 (1005)
....+.++|.|.+.++.-..+|+|.|.-. ...-. ... +.....|++........
T Consensus 427 ~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 506 (1105)
T KOG1326|consen 427 LYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPHEDEE 506 (1105)
T ss_pred hhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCcccccc
Confidence 34479999999999999999999987522 11100 000 00001111111111000
Q ss_pred ccc--------------ccccccccc--eeEEEe---ec-------------------CCc-------cccCCCc----c
Q 045058 548 VDQ--------------LKKEKFSSR--IHLRVC---LD-------------------GGY-------HVLDEST----H 578 (1005)
Q Consensus 548 ~~~--------------~~~~~~~~~--i~l~~~---l~-------------------~~~-------~~~~~~~----~ 578 (1005)
... .+-..+.-+ ..+.++ ++ |.. ++..+.+ .
T Consensus 507 e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rI 586 (1105)
T KOG1326|consen 507 EREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKGLFRI 586 (1105)
T ss_pred ceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhcceee
Confidence 000 000001112 122222 00 000 0000000 0
Q ss_pred c------cCCCccccc-ccC--CCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEE--EeeeccCCCCceec
Q 045058 579 Y------SSDLRPTAK-QLW--RPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWV--RTRTLVDNLSPKYN 647 (1005)
Q Consensus 579 ~------~~d~~~~~~-~~~--~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~--~T~~~~~t~nP~wn 647 (1005)
| .....|... .+. .+..-.++|+|++|.+|.+. |++|.+|||+++.+|++.. ++..+.+|+||+|+
T Consensus 587 yp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfg 663 (1105)
T KOG1326|consen 587 YPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFG 663 (1105)
T ss_pred ecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHH
Confidence 0 000000000 000 13445788999999999974 6799999999999999885 66778899999999
Q ss_pred cEEEEEEeCC-CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEccc
Q 045058 648 EQYTWEVFDP-ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRIST 692 (1005)
Q Consensus 648 e~f~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 692 (1005)
+.|++....| ...++++|||+|.++ .|+.||...|+|.+
T Consensus 664 kmfel~~~lp~ek~l~v~vyd~D~~~------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 664 KMFELECLLPFEKDLIVEVYDHDLEA------QDEKIGETTIDLEN 703 (1105)
T ss_pred HHHHhhcccchhhcceeEEEEeeccc------ccchhhceehhhhh
Confidence 9999999987 568999999999776 89999999999976
No 55
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.72 E-value=4.9e-17 Score=153.07 Aligned_cols=119 Identities=27% Similarity=0.394 Sum_probs=100.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCCcCCCC
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGEKS 675 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~~~ 675 (1005)
+|+|+|++|++|..++ ..+.+||||++.+++..++|+++++++||+|||.|.|.+... ...|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~d---~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKD---RNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCCC---CCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 4899999999999754 467899999999999999999999999999999999999875 578999999998766
Q ss_pred CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCC---CCceeeEEEEEEE
Q 045058 676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPT---GVKKMGELHLAIR 724 (1005)
Q Consensus 676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---~~~~~G~i~l~~~ 724 (1005)
++++||.+.++|+++..+.....||.|...... ..+..|.|++.++
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 ---KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred ---CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 789999999999999877666899999754332 2234699888763
No 56
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.72 E-value=3e-17 Score=148.17 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=86.3
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC----EEEEeeeccCCCCceeccEEEEEEeC---CCceEEEEE
Q 045058 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH----KWVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGV 665 (1005)
Q Consensus 593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~----~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v 665 (1005)
+..|.|.|+|++|+||+ + .|.+||||++.+.. .+.+|+++++|+||+|||+|.|.|.. +...|.|+|
T Consensus 11 ~~~~~L~V~vikA~~L~-~-----~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 11 KQKAELHVNILEAENIS-V-----DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred CcCCEEEEEEEEecCCC-C-----CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 56799999999999998 2 35589999999953 46799999999999999999999874 467899999
Q ss_pred EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEee
Q 045058 666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705 (1005)
Q Consensus 666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 705 (1005)
||+|+++ ++++||++.++++++.-+...++|..|
T Consensus 85 ~d~Drfs------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 85 RCCDRFS------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EeCCCCC------CCceEEEEEEccccccCCccccchhcC
Confidence 9999887 899999999999987655555677654
No 57
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=7.2e-17 Score=154.43 Aligned_cols=119 Identities=28% Similarity=0.406 Sum_probs=100.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCC
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-------WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNS 669 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-------~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~ 669 (1005)
.|+|+|++|+||+.. +..|.+||||++.+++. .++|+++++++||+|||+|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~---d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKK---DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcc---cCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 389999999999965 45678999999999654 47999999999999999999999776778999999999
Q ss_pred CcCCCCCCCCCcccEEEEEEcccccCCCE------EeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 670 QLGEKSNGNKDLKIGKVRIRISTLETGRI------YTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 670 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
.++ ++++||.+.|+++++..+.. ...||+|......+ +..|+|+|++.|
T Consensus 78 ~~~------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 766 89999999999999886542 45899998544334 346999999986
No 58
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.72 E-value=4.5e-17 Score=147.08 Aligned_cols=108 Identities=16% Similarity=0.282 Sum_probs=88.9
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC----eeeeeeeecCCCCCeeeeEEEEeec--CCCCc
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN----YKGITKHYEKNQNPQWHQVFAFSRD--RMQAS 331 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~----~~~kT~~~~~~~nP~wne~f~f~~~--~~~~~ 331 (1005)
.++..|+.. .+.|.|+|++|++|+ . .|.+||||++++.. .+.+|+++++|+||+|||+|.|.+. ++...
T Consensus 4 ~fsL~Y~~~--~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~ 78 (118)
T cd08677 4 HYSLSYDKQ--KAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDG 78 (118)
T ss_pred EEEEEEcCc--CCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCc
Confidence 455666654 599999999999998 3 46699999999975 4678999999999999999999874 56678
Q ss_pred EEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058 332 VLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL 375 (1005)
Q Consensus 332 ~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 375 (1005)
.|.|+|||+| ++++++||++.+++.++... ....+|..|
T Consensus 79 tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~-----~~~~~W~~~ 118 (118)
T cd08677 79 TLTLTLRCCDRFSRHSTLGELRLKLADVSMM-----LGAAQWVDL 118 (118)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEccccccCC-----ccccchhcC
Confidence 8999999999 89999999999999987543 234567543
No 59
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=8e-17 Score=150.68 Aligned_cols=117 Identities=27% Similarity=0.400 Sum_probs=99.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN 676 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~ 676 (1005)
|.|+|++|+||++++ ..|.+||||++.++++. .||+++.+++||+|||.|.|.+......|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKD---ITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCCC---CCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 789999999999764 47789999999998764 6999999999999999999999877789999999999776
Q ss_pred CCCCcccEEEEEEcccccCC-CEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058 677 GNKDLKIGKVRIRISTLETG-RIYTHSYPLLVLHPTGVKKMGELHLAIR 724 (1005)
Q Consensus 677 ~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~G~i~l~~~ 724 (1005)
+|++||++.+++.++..+ ...+.|++|......+. ..|+|++.++
T Consensus 75 --~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 --RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred --CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 899999999999888754 34679999975544333 4599998875
No 60
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.72 E-value=9.9e-17 Score=151.49 Aligned_cols=117 Identities=29% Similarity=0.448 Sum_probs=98.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------------CeEeeccccCCCCCCce-eeEEEEEeccCccccceEE
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFD-------------GQRFRTTIKENDLNPVW-NESFYFNISDASKLHYLTL 70 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-------------~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~~~~l 70 (1005)
.+.|++++|+||+ ++..|.+||||++++. +++++|+++++++||+| ||+|.|.+... ..|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~-----~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT-----DVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC-----CEE
Confidence 4689999999998 7788999999999984 24789999999999999 99999998532 479
Q ss_pred EEEEEeCCCCCC--CCcccEEEEEeCCcccCCCC--ceeeeEecccCCCcceeeeEEEEEE
Q 045058 71 EAYIYNNIGDTN--SRSFLGKVCLTGNSFVPLSD--SVVLHYPLEKRGIFSHVRGELGLKV 127 (1005)
Q Consensus 71 ~v~V~d~~~~~~--~d~~lG~~~i~l~~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~l~~ 127 (1005)
.|+|||++.... .+++||++.+++.++..... ....||+|++++..+.++|+|.+++
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999999743221 27999999999999975542 3567999999999999999999986
No 61
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.72 E-value=7.2e-17 Score=151.86 Aligned_cols=117 Identities=29% Similarity=0.506 Sum_probs=100.2
Q ss_pred eEEEEEEEEecCCCCCCCCC---CCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCc
Q 045058 596 GILELGILNAVGLHPMKTRD---GRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQL 671 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~---~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~ 671 (1005)
|.|+|+|++|+||+..+... ..|.+||||++.+++..++|++++++.||+|||.|.|.+.+ ....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 68999999999999765311 14689999999999999999999999999999999999976 578999999999742
Q ss_pred CCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 672 GEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 672 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
++++||.+.++|+++..+.....||+|.. . ..|+|++++++
T Consensus 81 -------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~-----~-~~G~~~~~~~~ 121 (121)
T cd08391 81 -------KDDFLGRLSIDLGSVEKKGFIDEWLPLED-----V-KSGRLHLKLEW 121 (121)
T ss_pred -------CCCcEEEEEEEHHHhcccCccceEEECcC-----C-CCceEEEEEeC
Confidence 68999999999999988877889999962 1 45999998764
No 62
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.71 E-value=9.3e-17 Score=150.14 Aligned_cols=114 Identities=27% Similarity=0.421 Sum_probs=96.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT 81 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 81 (1005)
.|.|+|++|++|+..+..|.+||||++++. +.++||++++++.||+|||+|.|.+.... ...|.|+|||++. .
T Consensus 1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~-~ 76 (119)
T cd04036 1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDY-V 76 (119)
T ss_pred CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCC-C
Confidence 378999999999999888999999999986 35789999999999999999999986532 3579999999964 4
Q ss_pred CCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 82 NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
+|++||++.+++.++..+. ....|++|.+.+ +|++++++.+
T Consensus 77 -~~~~iG~~~~~l~~l~~g~-~~~~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGE-KVRVTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred -CCcccEEEEEEHHHCCCCC-cEEEEEECCCCC-----CceEEEEEEe
Confidence 8999999999999987654 446899998653 6888888865
No 63
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.71 E-value=8e-17 Score=151.12 Aligned_cols=106 Identities=16% Similarity=0.253 Sum_probs=91.3
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCceeccEEEEEEeC---CCceEEEE
Q 045058 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG-----HKWVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVG 664 (1005)
Q Consensus 593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g-----~~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~ 664 (1005)
+..|.|.|.|++|+||++.+ ...|.+||||++.+. ....||+++++++||+|||+|.|++.. ....|.|+
T Consensus 12 ~~~~~L~V~Vi~a~~L~~~~--~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 12 YKTQSLNVHVKECRNLAYGD--EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCCeEEEEEEEecCCCccC--CCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45689999999999999754 235789999999983 234799999999999999999999865 35689999
Q ss_pred EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058 665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706 (1005)
Q Consensus 665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 706 (1005)
|||++.++ ++++||.+.|+|.++......+.||||.
T Consensus 90 V~d~~~~~------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDRFG------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCCCC------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999766 8999999999999999888889999983
No 64
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=1.1e-16 Score=150.60 Aligned_cols=115 Identities=27% Similarity=0.420 Sum_probs=98.0
Q ss_pred cEEEEEEEEeecCCCCCC------CCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 4 LKLGVQVVGAHNLLPKDG------KGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~------~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
|.|+|+|++|+||+.++. .|.+||||+|+++++.++|+++++++||+|||+|.|.+.... ...|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence 579999999999998875 368999999999999999999999999999999999986532 36899999998
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
+. . ++++||++.+++.++...+. ...||+|.+. .+|+|++.+.|
T Consensus 78 ~~-~-~~~~iG~~~i~l~~l~~~~~-~~~w~~L~~~-----~~G~~~~~~~~ 121 (121)
T cd08391 78 DP-D-KDDFLGRLSIDLGSVEKKGF-IDEWLPLEDV-----KSGRLHLKLEW 121 (121)
T ss_pred CC-C-CCCcEEEEEEEHHHhcccCc-cceEEECcCC-----CCceEEEEEeC
Confidence 54 4 89999999999999876554 4689999764 36999998754
No 65
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=6.5e-17 Score=153.70 Aligned_cols=104 Identities=23% Similarity=0.366 Sum_probs=90.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE--CC---EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEE-eCC
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKY--GH---KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVF-DNS 669 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~--g~---~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~-d~~ 669 (1005)
|.|.|+|++|+||.+.+ +..|.+||||++++ ++ .+.||+++++|+||+|||+|.|++......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 88999999999999753 23678999999999 33 267999999999999999999999866779999999 566
Q ss_pred CcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058 670 QLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV 707 (1005)
Q Consensus 670 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 707 (1005)
.+. ++++||.+.|+|+++..+.....||+|..
T Consensus 107 ~~~------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 107 RMD------KKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCC------CCceEEEEEEEcccccCCCCceeEEecCC
Confidence 544 89999999999999988777789999973
No 66
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.71 E-value=6.3e-17 Score=151.93 Aligned_cols=107 Identities=22% Similarity=0.368 Sum_probs=90.3
Q ss_pred CcEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 3 NLKLGVQVVGAHNLLPKDGK-GSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
.+.|.|+|++|+||..++.. |.+||||+|++. ..++||+++++++||+|||+|.|.+... .+....|.|.|||
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~-~l~~~~L~v~V~~ 92 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD-LLSSRQLQVSVWH 92 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH-HhCCcEEEEEEEe
Confidence 47899999999999999875 899999999984 2378999999999999999999998653 3556799999999
Q ss_pred CCCCCCCCcccEEEEEeCCcccCC--CCceeeeEecc
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPL--SDSVVLHYPLE 111 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~ 111 (1005)
++. .+++++||++.|+|.++... ++....||+|.
T Consensus 93 ~~~-~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 93 SRT-LKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred CCC-CcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 964 46899999999999998544 34556899983
No 67
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.71 E-value=7.9e-17 Score=148.15 Aligned_cols=100 Identities=19% Similarity=0.250 Sum_probs=86.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-C----C--EEEEeeeccCCCCceeccEEEEEEeCC----CceEEEEE
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-G----H--KWVRTRTLVDNLSPKYNEQYTWEVFDP----ATVLTVGV 665 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-g----~--~~~~T~~~~~t~nP~wne~f~~~v~~~----~~~l~i~v 665 (1005)
.|+|+|++|++|+..+ .|.+||||+|.+ | . ++++|+++.+++||+|||+|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~d----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQT----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCccc----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 4899999999998653 488999999997 4 2 346899999999999999999999742 35799999
Q ss_pred EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058 666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706 (1005)
Q Consensus 666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 706 (1005)
||++..+ +|++||++.+||+++..++....|++|.
T Consensus 77 ~D~d~~~------~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 77 KDYCFAR------DDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred EEecccC------CCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 9998654 7899999999999999988889999996
No 68
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.71 E-value=5.7e-17 Score=152.38 Aligned_cols=106 Identities=26% Similarity=0.402 Sum_probs=89.8
Q ss_pred CcEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 3 NLKLGVQVVGAHNLLPKDGK-GSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
.+.|.|+|++|+||+.++.. |.+||||+|++. ..++||+++++++||+|||+|.|.+...+ +....|.|.|||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~-l~~~~L~~~V~d 92 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE-LPTRVLNLSVWH 92 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH-hCCCEEEEEEEe
Confidence 36899999999999999975 899999999983 23689999999999999999999986432 555789999999
Q ss_pred CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE 111 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 111 (1005)
++. .+++++||++.++|.++...+. ...||+|+
T Consensus 93 ~~~-~~~~~~iG~~~i~L~~~~~~~~-~~~W~~L~ 125 (125)
T cd08393 93 RDS-LGRNSFLGEVEVDLGSWDWSNT-QPTWYPLQ 125 (125)
T ss_pred CCC-CCCCcEeEEEEEecCccccCCC-CcceEECc
Confidence 964 5689999999999999976643 35799984
No 69
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=1.2e-16 Score=151.79 Aligned_cols=107 Identities=21% Similarity=0.363 Sum_probs=88.8
Q ss_pred CcEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 3 NLKLGVQVVGAHNLLPKD-GKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
.+.|.|+|++|+||..++ ..|.+||||++++. + .++||+++++|+||+|||+|.|.+. .....|.|+||+
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~----l~~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS----PTGKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc----CCCCEEEEEEEe
Confidence 478999999999999875 57889999999983 3 3789999999999999999999996 335689999995
Q ss_pred CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
+...+.+++|||++.|+|.++..... ...||+|.+..
T Consensus 104 d~~~~~~~~~iG~~~i~L~~l~~~~~-~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRMDKKVFMGVAQILLDDLDLSNL-VIGWYKLFPTS 140 (146)
T ss_pred CCCCCCCCceEEEEEEEcccccCCCC-ceeEEecCCcc
Confidence 32345689999999999999865444 35799998764
No 70
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=99.70 E-value=1.1e-16 Score=179.78 Aligned_cols=205 Identities=21% Similarity=0.312 Sum_probs=146.8
Q ss_pred hccCCCcccchhhhHHHHHHHHH-HHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh-
Q 045058 786 MSDVDSHLWSMRRSKANFFRLMT-VFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFLYMFLIGIW- 863 (1005)
Q Consensus 786 ~~~~d~~~fs~~~~k~n~~rl~~-~~~~~~~~~~~~~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~~~~~~~~- 863 (1005)
|.-++...||..++++|++||+. ++-.+..+.+.+.+|++|++|+||..+|++|+++ |+.++++|+++.+++.+.++
T Consensus 80 Ln~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~a-W~~dll~p~~~~~L~~li~~P 158 (642)
T PF11696_consen 80 LNIAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIA-WLLDLLVPAFFAFLIALILSP 158 (642)
T ss_pred ccccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCc
Confidence 34567889999999999999999 8889999999999999999999999999999988 78899999998877776664
Q ss_pred ---ccccCCCCCCCCCcccccc-----------c--------------------------------------CCCCCCCC
Q 045058 864 ---NYRYRPRYPPHMNIKISQA-----------E--------------------------------------AVHPDELD 891 (1005)
Q Consensus 864 ---~~~~~~~~~~~~~~~~s~~-----------~--------------------------------------~~~~~~~~ 891 (1005)
.++|+|.+++.+|...... + ...+++..
T Consensus 159 ~~r~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~ 238 (642)
T PF11696_consen 159 PARSILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDP 238 (642)
T ss_pred ccccccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCC
Confidence 7789999888887442111 0 00011110
Q ss_pred C-CCCCCCC---------------CC---ChHHHHH-HHHHHHhhhhhHHHHHHHHHhHHHHHhhccccCCch-------
Q 045058 892 E-EFDTFPT---------------SR---SPELVRM-RYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPR------- 944 (1005)
Q Consensus 892 ~-e~~~~~~---------------~~---~~~~~~~-~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~------- 944 (1005)
+ +...++. .+ ..+..++ .-.++-..+..+|++|++++|.+||+-|+|+.+.||
T Consensus 239 ~~~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~Rl 318 (642)
T PF11696_consen 239 EEDSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMKEAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPRL 318 (642)
T ss_pred ccCCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHHHHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHHH
Confidence 0 0000110 00 0011111 112345568899999999999999999999999999
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCCCCchhhhhhc
Q 045058 945 -ATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSVPINFFRR 996 (1005)
Q Consensus 945 -~t~~~~~~~~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~~~~~~~~~~~~r 996 (1005)
+..+++.+++++.++..++-.|.+.+++|+. .|.+++..+.++||+|
T Consensus 319 RLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~-----FFGdPiI~r~~~~Lnr 366 (642)
T PF11696_consen 319 RLAAILAPLLLASLFVSSYMFVKGTTFGFGFG-----FFGDPIITRGIDYLNR 366 (642)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHH-----hhccHHHHHHHHHHhc
Confidence 4556677777777777788899999999998 5555544444444443
No 71
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.70 E-value=2e-16 Score=151.16 Aligned_cols=124 Identities=19% Similarity=0.329 Sum_probs=99.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccC----ccc--cceEEEEEEEeC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDA----SKL--HYLTLEAYIYNN 77 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~----~~~--~~~~l~v~V~d~ 77 (1005)
.+|+|+|++|++|..+|..|.+||||+|++++++++|+++++++||+|||+|.|.+... +.. ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 36899999999999999999999999999999999999999999999999999985321 111 124789999999
Q ss_pred CCCCCCCcccEEEEE-eCCcccC--CCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 78 IGDTNSRSFLGKVCL-TGNSFVP--LSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i-~l~~l~~--~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
+. .++|++||++.+ ++..+.. .......|++|.+.+ ..+|+|.+++.+..
T Consensus 81 d~-~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DS-VGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred cC-CCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 65 468999999997 4444432 223445899998654 46899999998875
No 72
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.70 E-value=8.6e-17 Score=149.41 Aligned_cols=106 Identities=25% Similarity=0.249 Sum_probs=91.4
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC------CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD------GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~------~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
.+.|.|+|++|+||..++..|.+||||+|++- +.++||+++++++||+|||+|.|.+... .+....|.|.|||
T Consensus 13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~-~L~~~~L~~~V~~ 91 (124)
T cd08680 13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISST-KLYQKTLQVDVCS 91 (124)
T ss_pred CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHH-HhhcCEEEEEEEe
Confidence 47899999999999999888999999999972 2478999999999999999999998643 4677899999999
Q ss_pred CCCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL 110 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 110 (1005)
++ ..+++++||++.|+|.++...+.....||+|
T Consensus 92 ~~-~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 92 VG-PDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CC-CCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 96 4568999999999999996665555679986
No 73
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.70 E-value=3.8e-16 Score=147.27 Aligned_cols=120 Identities=20% Similarity=0.303 Sum_probs=100.1
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC
Q 045058 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK 674 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~ 674 (1005)
.+.|+|+|++|++|... +..|.+||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~~~~V~v~~A~~L~~~---d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ---DSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCC---CCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 37899999999999964 457889999999999999999999999999999999999988888999999999754
Q ss_pred CCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCC-CCCceeeEEEEEEEEe
Q 045058 675 SNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHP-TGVKKMGELHLAIRFS 726 (1005)
Q Consensus 675 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~-~~~~~~G~i~l~~~~~ 726 (1005)
+|++||.+.++++.+..+. .++|+|..... ...+..|+|.+++.+.
T Consensus 76 ----~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 ----CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ----CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 4799999999998865443 58899963221 2233469999998763
No 74
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.69 E-value=3.3e-16 Score=149.28 Aligned_cols=118 Identities=23% Similarity=0.374 Sum_probs=99.7
Q ss_pred CCCcEEEEEEEEeecCCCCCCC----------CCCCcEEEEEECCeE-eeccccCCCCCCceeeEEEEEeccCccccceE
Q 045058 1 MRNLKLGVQVVGAHNLLPKDGK----------GSSSAFVELYFDGQR-FRTTIKENDLNPVWNESFYFNISDASKLHYLT 69 (1005)
Q Consensus 1 m~~~~l~V~v~~a~~L~~~d~~----------g~~dpyv~v~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~ 69 (1005)
|-.+.|+|+|++|++|...+.. |.+||||+|.+++++ .+|+++++++||.|||+|.|.+.+. ..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-----~~ 75 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHNG-----RN 75 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCCC-----CE
Confidence 5678999999999999988752 689999999999865 6999999999999999999999632 58
Q ss_pred EEEEEEeCCCCCCCCcccEEEEEeCCcccCC-CCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 70 LEAYIYNNIGDTNSRSFLGKVCLTGNSFVPL-SDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 70 l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
|.|.|||++. .+.+++||++.++|.++... +...+.|++|++ +|+|++++.+..
T Consensus 76 l~~~v~d~~~-~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAA-IGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCC-CCCCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 9999999853 45889999999999998774 444568999963 589999998765
No 75
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.69 E-value=9.7e-17 Score=148.86 Aligned_cols=104 Identities=22% Similarity=0.415 Sum_probs=86.7
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|.|+|++|+||..++ .|.+||||+|++.. .++||+++++++||+|||+|.|.+...+ . ...|.|.|||+
T Consensus 11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~-~-~~~l~v~V~~~ 87 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD-Y-QKRLLVTVWNK 87 (119)
T ss_pred CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH-h-CCEEEEEEECC
Confidence 578999999999999998 78999999999853 3679999999999999999999986533 2 24688999998
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL 110 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 110 (1005)
+....++++||++.|++.++.. +.....||.|
T Consensus 88 ~~~~~~~~~lG~~~i~l~~~~~-~~~~~~Wy~l 119 (119)
T cd08685 88 LSKSRDSGLLGCMSFGVKSIVN-QKEISGWYYL 119 (119)
T ss_pred CCCcCCCEEEEEEEecHHHhcc-CccccceEeC
Confidence 6544457999999999999975 4434689986
No 76
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.69 E-value=1.5e-16 Score=149.38 Aligned_cols=107 Identities=30% Similarity=0.393 Sum_probs=89.8
Q ss_pred CCcEEEEEEEEeecCCCCCC-CCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEE
Q 045058 2 RNLKLGVQVVGAHNLLPKDG-KGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIY 75 (1005)
Q Consensus 2 ~~~~l~V~v~~a~~L~~~d~-~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~ 75 (1005)
..+.|.|+|++|+||..++. .|.+||||+|++. ..++||+++++++||+|||+|.|.+...+ +....|.|.||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~-l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ-LETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH-hCCCEEEEEEE
Confidence 35789999999999998875 5789999999984 23689999999999999999999986532 45568999999
Q ss_pred eCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058 76 NNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE 111 (1005)
Q Consensus 76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 111 (1005)
|++. .+++++||++.+++.++..... ...||+|.
T Consensus 92 d~~~-~~~~~~lG~~~i~l~~~~~~~~-~~~w~~l~ 125 (125)
T cd04029 92 HYDR-FGRNTFLGEVEIPLDSWNFDSQ-HEECLPLH 125 (125)
T ss_pred ECCC-CCCCcEEEEEEEeCCcccccCC-cccEEECc
Confidence 9964 5689999999999999977755 35799984
No 77
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=2e-16 Score=143.90 Aligned_cols=96 Identities=19% Similarity=0.330 Sum_probs=84.0
Q ss_pred eEEEEEEEEecCCCCCCCCC-CCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC--CceEEEEEEeCCCcC
Q 045058 596 GILELGILNAVGLHPMKTRD-GRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP--ATVLTVGVFDNSQLG 672 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~-~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~l~i~v~d~~~~~ 672 (1005)
|.|.|+|++|+||++.+... ..+.+||||++.++++.+||+++++++||+|||.|.|.+.+. ...|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999876421 234589999999999999999999999999999999999763 458999999999776
Q ss_pred CCCCCCCCcccEEEEEEcccccCCC
Q 045058 673 EKSNGNKDLKIGKVRIRISTLETGR 697 (1005)
Q Consensus 673 ~~~~~~~d~~lG~~~i~l~~l~~~~ 697 (1005)
.|++||++.++|++|..+.
T Consensus 81 ------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 ------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999998764
No 78
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=2.3e-16 Score=149.09 Aligned_cols=120 Identities=30% Similarity=0.374 Sum_probs=99.8
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC--EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcC
Q 045058 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH--KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLG 672 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~--~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~ 672 (1005)
+|.|+|+|++|+||+..+ ...+.+||||++.+++ ...+|+++.++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--IIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCccc--ccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 489999999999998532 2356789999999987 789999999999999999999999866889999999998655
Q ss_pred CCCCCCCCcccEEEEEEcccccCCCEEee-eEeeeecCCCCCceeeEEEEEEEEe
Q 045058 673 EKSNGNKDLKIGKVRIRISTLETGRIYTH-SYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 673 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~-~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
+|++||++.++|+++..+..... ++++. .++ +..|+|++.++|-
T Consensus 79 ------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~---~~~-k~~G~i~~~l~~~ 123 (124)
T cd04044 79 ------KDKLIGTAEFDLSSLLQNPEQENLTKNLL---RNG-KPVGELNYDLRFF 123 (124)
T ss_pred ------CCceeEEEEEEHHHhccCccccCcchhhh---cCC-ccceEEEEEEEeC
Confidence 79999999999999988765543 44443 222 3469999999983
No 79
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=2.1e-16 Score=144.01 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=86.0
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCC
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKS 675 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~ 675 (1005)
|.|.|+|++|++|+. .+..||||++++|+++.+|++++++ ||.|||.|.|.+.+....|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~------~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGA------PDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCC------CCCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 689999999999973 2345899999999999999999884 99999999999988877899999999843
Q ss_pred CCCCCcccEEEEEEcccccCCCEE--eeeEeeee
Q 045058 676 NGNKDLKIGKVRIRISTLETGRIY--THSYPLLV 707 (1005)
Q Consensus 676 ~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~ 707 (1005)
.||+||++.|+|+++..+... ..||+|..
T Consensus 71 ---~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 71 ---WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred ---CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 699999999999998876544 78999973
No 80
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.68 E-value=2.6e-16 Score=148.31 Aligned_cols=109 Identities=19% Similarity=0.280 Sum_probs=89.8
Q ss_pred CcEEEEEEEEeecCCCCCCC-CCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058 3 NLKLGVQVVGAHNLLPKDGK-GSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI 78 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 78 (1005)
...|.|+|++|+||+.++.. |.+||||+|++. +++.||+++++++||+|||+|.|.....+.+....|.|.|||++
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d 94 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD 94 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence 47899999999999998876 899999999984 34789999999999999999999532223344568999999996
Q ss_pred CCCCCCcccEEEEEeCCcccCC-CCceeeeEeccc
Q 045058 79 GDTNSRSFLGKVCLTGNSFVPL-SDSVVLHYPLEK 112 (1005)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~w~~L~~ 112 (1005)
. .++|++||++.++|.++... +.....|++|++
T Consensus 95 ~-~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 95 R-YSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred C-CCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 4 56899999999999998655 344678999864
No 81
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.68 E-value=4.9e-16 Score=146.75 Aligned_cols=121 Identities=26% Similarity=0.380 Sum_probs=98.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC--
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK-- 674 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~-- 674 (1005)
.|+|+|++|++|+.. |..|.+||||++.+++...+|+++.+++||+|||.|.|.+..+...|.|+|||+|....+
T Consensus 2 ~L~V~vi~a~~L~~~---d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAK---DKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCC---CCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 689999999999965 457789999999999999999999999999999999999977777999999999852100
Q ss_pred ---CCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEE
Q 045058 675 ---SNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAI 723 (1005)
Q Consensus 675 ---~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 723 (1005)
....++++||.+.|++.++.... ..||+|....... ...|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCC-cEeEEEEEEC
Confidence 01137999999999999986443 6899998554333 3469998864
No 82
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=4.2e-16 Score=142.09 Aligned_cols=102 Identities=28% Similarity=0.431 Sum_probs=88.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCcee
Q 045058 269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFV 348 (1005)
Q Consensus 269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~l 348 (1005)
|+.|.|+|++|++|+..+ ..||||++++++++.+|++.++ .||.|||.|.|.+.+... .|.|+|||++...|++|
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~-~L~v~V~dkd~~~DD~l 75 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDL-GLVIELWNKGLIWDTLV 75 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCC-EEEEEEEeCCCcCCCce
Confidence 368999999999997654 4589999999999999998877 599999999999987664 59999999997799999
Q ss_pred EEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058 349 GIVRFDINEVPLRVPPDSPLAPEWYRLEDK 378 (1005)
Q Consensus 349 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 378 (1005)
|++.|+|.++..+ +....++||+|...
T Consensus 76 G~v~i~L~~v~~~---~~~~~~~Wy~L~~~ 102 (127)
T cd08394 76 GTVWIPLSTIRQS---NEEGPGEWLTLDSE 102 (127)
T ss_pred EEEEEEhHHcccC---CCCCCCccEecChH
Confidence 9999999999876 34677999999854
No 83
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.68 E-value=3.7e-16 Score=146.89 Aligned_cols=112 Identities=26% Similarity=0.450 Sum_probs=94.0
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeec--CCC
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLT-GSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRD--RMQ 329 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~--~~~ 329 (1005)
.++..|+. ..+.|.|+|++|+||+.++.. |.+||||++++.+ .++||++++++.||+|||+|.|.+. ++.
T Consensus 5 ~~sl~y~~--~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~ 82 (125)
T cd08393 5 QFALDYDP--KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELP 82 (125)
T ss_pred EEEEEEEC--CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhC
Confidence 45555554 347899999999999999875 8999999999963 3468999999999999999999975 455
Q ss_pred CcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058 330 ASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376 (1005)
Q Consensus 330 ~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 376 (1005)
...|.|+|||++ .+++++||++.++|.++... .....||+|.
T Consensus 83 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~-----~~~~~W~~L~ 125 (125)
T cd08393 83 TRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWS-----NTQPTWYPLQ 125 (125)
T ss_pred CCEEEEEEEeCCCCCCCcEeEEEEEecCccccC-----CCCcceEECc
Confidence 678999999999 77899999999999999754 3467899873
No 84
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.68 E-value=7.3e-16 Score=146.93 Aligned_cols=118 Identities=26% Similarity=0.353 Sum_probs=99.9
Q ss_pred ceEEEEEEEEecCCCCCCCC-------CCCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCCceEEEEEE
Q 045058 595 IGILELGILNAVGLHPMKTR-------DGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVF 666 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~-------~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~ 666 (1005)
.|.|+|+|++|+||.+.+.. .+.+.+||||++.++++. .+|+++.+++||.|||.|+|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 48999999999999976531 013678999999999876 59999999999999999999996 4578999999
Q ss_pred eCCCcCCCCCCCCCcccEEEEEEcccccC--CCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058 667 DNSQLGEKSNGNKDLKIGKVRIRISTLET--GRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC 727 (1005)
Q Consensus 667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~ 727 (1005)
|++.++ ++++||++.++|+++.. +...+.||+|. ..|+|+|++++..
T Consensus 82 d~~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998765 78999999999999887 45678999995 3499999998753
No 85
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.68 E-value=2.8e-16 Score=148.66 Aligned_cols=106 Identities=26% Similarity=0.416 Sum_probs=88.7
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|.|+|++|+||..++..+.+||||+|++.+ .+++|+++++++||+|||+|.|.+...+.+....|.|+|||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 478999999999999999889999999999854 578999999999999999999996543334456899999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE 111 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 111 (1005)
+. .+++++||++.++|.+....+ ...||+|+
T Consensus 95 ~~-~~~~~~iG~~~i~l~~~~~~~--~~~W~~L~ 125 (125)
T cd04031 95 DR-DGENDFLGEVVIDLADALLDD--EPHWYPLQ 125 (125)
T ss_pred CC-CCCCcEeeEEEEecccccccC--CcceEECc
Confidence 54 458999999999999843333 24799985
No 86
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=4.4e-16 Score=147.23 Aligned_cols=120 Identities=23% Similarity=0.324 Sum_probs=98.6
Q ss_pred cEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC--eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058 4 LKLGVQVVGAHNLLPKD-GKGSSSAFVELYFDG--QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD 80 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~--~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~ 80 (1005)
|.|+|+|++|+||+..+ ..+.+||||+|++++ ..++|+++.++.||.|||.|.|.+... ...|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~----~~~l~~~v~d~~~- 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL----TEPLNLTVYDFND- 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCC----CCEEEEEEEecCC-
Confidence 67999999999999765 456799999999988 689999999999999999999998632 3589999999954
Q ss_pred CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 81 TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
.++|++||++.+++.++.........|+.|...+ +.+|+|++++.|.+
T Consensus 77 ~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~---k~~G~i~~~l~~~p 124 (124)
T cd04044 77 KRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNG---KPVGELNYDLRFFP 124 (124)
T ss_pred CCCCceeEEEEEEHHHhccCccccCcchhhhcCC---ccceEEEEEEEeCC
Confidence 4589999999999999987655433456665322 56899999998863
No 87
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=2.4e-16 Score=150.97 Aligned_cols=102 Identities=24% Similarity=0.313 Sum_probs=86.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEe---------------C
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVF---------------D 656 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~---------------~ 656 (1005)
.|.|+|++|+||.. ..|.+||||++.+++ ...+|+++++|+||+|||.|.|++. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 38999999999985 257899999999965 5679999999999999999999995 1
Q ss_pred -CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCC-CEEeeeEeeeecC
Q 045058 657 -PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETG-RIYTHSYPLLVLH 709 (1005)
Q Consensus 657 -~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~ 709 (1005)
....|.|.|||++.++ .|++||++.|+|+.+..+ .....||+|....
T Consensus 76 ~~~~~L~i~V~d~~~~~------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 76 AEKLELRVDLWHASMGG------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred ccEEEEEEEEEcCCCCC------CCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 1247999999998655 899999999999999987 5568999997443
No 88
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=2.7e-16 Score=144.43 Aligned_cols=105 Identities=28% Similarity=0.469 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEECCeEeeccccCCCCCCce-eeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058 6 LGVQVVGAHNLLPKDG-KGSSSAFVELYFDGQRFRTTIKENDLNPVW-NESFYFNISDASKLHYLTLEAYIYNNIGDTNS 83 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~-~g~~dpyv~v~~~~~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~ 83 (1005)
|.|+|++|+||+.++. .|.+||||+|+++++++||+++++++||+| ||+|.|.+...+ +....|.|+|||++ ..++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d-~~~~ 78 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHD-TYSA 78 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCC-CCCC
Confidence 6899999999999884 688999999999999999999999999999 999999986543 33468999999995 4568
Q ss_pred CcccEEEEEeCCcccCC--CCceeeeEeccc
Q 045058 84 RSFLGKVCLTGNSFVPL--SDSVVLHYPLEK 112 (1005)
Q Consensus 84 d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~ 112 (1005)
+++||++.+++.++... +.....||+|..
T Consensus 79 ~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 79 NDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99999999999998763 333567999864
No 89
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.67 E-value=7.7e-16 Score=144.57 Aligned_cols=105 Identities=21% Similarity=0.313 Sum_probs=89.4
Q ss_pred EEEEEEEEeeeCCCCCCC-CCCCcEEEEEEC-----CeEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEecc
Q 045058 435 YVRVNVVEAQDLVPTEKN-HFPDVYVKAQIG-----NQVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRV 506 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~-~~~dpyv~v~lg-----~~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d 506 (1005)
.|.|.|++|+||+..+.. |.+||||++++. ..+.||++++ ++.||.|||+|.|.+... ....|.+.|||.+
T Consensus 16 ~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~-~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~ 94 (128)
T cd08392 16 CLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK-GTVNPVFNETLKYVVEADLLSSRQLQVSVWHSR 94 (128)
T ss_pred EEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeeccccc-CCCCCccceEEEEEcCHHHhCCcEEEEEEEeCC
Confidence 799999999999999875 899999999993 2467899996 999999999999998553 3568999999999
Q ss_pred CCCCCceeEEEEEcccccccccccccccceeEEcc
Q 045058 507 GPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLE 541 (1005)
Q Consensus 507 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 541 (1005)
.++++++||++.|+|+++.... ......+||+|.
T Consensus 95 ~~~~~~~lG~~~i~L~~~~~~~-~~~~~~~W~~l~ 128 (128)
T cd08392 95 TLKRRVFLGEVLIPLADWDFED-TDSQRFLWYPLN 128 (128)
T ss_pred CCcCcceEEEEEEEcCCcccCC-CCccccceEECc
Confidence 9899999999999999986542 234578999984
No 90
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.67 E-value=3e-16 Score=144.17 Aligned_cols=101 Identities=24% Similarity=0.386 Sum_probs=89.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCcee-ccEEEEEEeCC---CceEEEEEEeCCCcCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKY-NEQYTWEVFDP---ATVLTVGVFDNSQLGE 673 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~w-ne~f~~~v~~~---~~~l~i~v~d~~~~~~ 673 (1005)
|+|+|++|+||++++. ..|.+||||++.+++..+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 6899999999997642 3578899999999999999999999999999 99999999763 468999999999776
Q ss_pred CCCCCCCcccEEEEEEcccccC---CCEEeeeEeee
Q 045058 674 KSNGNKDLKIGKVRIRISTLET---GRIYTHSYPLL 706 (1005)
Q Consensus 674 ~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~ 706 (1005)
++++||++.++|+++.. +.....||+|.
T Consensus 78 -----~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 78 -----ANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred -----CCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 88999999999999877 34578999986
No 91
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.67 E-value=9.7e-16 Score=145.03 Aligned_cols=125 Identities=22% Similarity=0.389 Sum_probs=103.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE-EEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCC
Q 045058 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW-VRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGE 673 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~-~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~ 673 (1005)
.-.|.|.|++|+||++++ +|||.+.+++.. .||+++.++.||.|||.|.|+...+...|+|.||+.+...+
T Consensus 10 ~~sL~v~V~EAk~Lp~~~--------~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK--------RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEEccCCCCcC--------CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCccc
Confidence 367999999999999643 799999999987 49999999999999999999877777899999987653210
Q ss_pred CCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCC-------CceeeEEEEEEEEeecc
Q 045058 674 KSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTG-------VKKMGELHLAIRFSCTS 729 (1005)
Q Consensus 674 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~-------~~~~G~i~l~~~~~~~~ 729 (1005)
...++++||++.||+.++..+...+.||||.....+. ....+.|+++++|....
T Consensus 82 --~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 82 --KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred --cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 1226899999999999999999999999998666543 33458999999997543
No 92
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.67 E-value=8.5e-16 Score=143.63 Aligned_cols=113 Identities=31% Similarity=0.472 Sum_probs=97.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCcee
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFV 348 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~l 348 (1005)
|.|+|++|++|+..+..+.+||||++++++ ..++|++++++.||+|||+|.|.+.......|.|+|||++..++++|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~~~i 81 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMDDHL 81 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCCccc
Confidence 689999999999998889999999999964 56799999999999999999999876655789999999993389999
Q ss_pred EEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEE
Q 045058 349 GIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWI 393 (1005)
Q Consensus 349 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~ 393 (1005)
|++.+++.++..+ .....|++|.... .|++.+.+.+
T Consensus 82 G~~~~~l~~l~~g-----~~~~~~~~L~~~~----~g~l~~~~~~ 117 (119)
T cd04036 82 GTVLFDVSKLKLG-----EKVRVTFSLNPQG----KEELEVEFLL 117 (119)
T ss_pred EEEEEEHHHCCCC-----CcEEEEEECCCCC----CceEEEEEEe
Confidence 9999999998765 3568899998753 3888887754
No 93
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.66 E-value=5.3e-16 Score=146.26 Aligned_cols=106 Identities=24% Similarity=0.327 Sum_probs=91.0
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG 79 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 79 (1005)
.+.|.|+|++|+||..++..|.+||||+|++. +.+++|+++++++||+|||+|.|.+...+ +....|.|+|||++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~-l~~~~l~i~V~d~~~ 93 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQE-LPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHH-hCCCEEEEEEEECCC
Confidence 47899999999999999999999999999983 34789999999999999999999986532 345689999999954
Q ss_pred CCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058 80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE 111 (1005)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 111 (1005)
.+++++||++.+++.++...+. ...||+|+
T Consensus 94 -~~~~~~iG~~~i~l~~~~~~~~-~~~W~~l~ 123 (124)
T cd08387 94 -FSRDECIGVVELPLAEVDLSEK-LDLWRKIQ 123 (124)
T ss_pred -CCCCceeEEEEEecccccCCCC-cceEEECc
Confidence 5689999999999999986664 46899985
No 94
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.66 E-value=3.6e-16 Score=143.90 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=87.1
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGK-GSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG 79 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 79 (1005)
|.|+|+|++|+||+..+.. |.+||||+|++.+ ..++|+++++++||+|||+|.|.+...+......|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 6899999999999999987 8999999999843 46899999999999999999998865432234589999999964
Q ss_pred CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058 80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK 112 (1005)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 112 (1005)
.++|++||++.+++.++...+ .|++++.
T Consensus 81 -~~~dd~lG~~~i~l~~l~~~~----~~~~~~~ 108 (111)
T cd04041 81 -FTADDRLGRVEIDLKELIEDR----NWMGRRE 108 (111)
T ss_pred -CCCCCcceEEEEEHHHHhcCC----CCCcccc
Confidence 458999999999999997433 4888754
No 95
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.66 E-value=7.3e-16 Score=145.33 Aligned_cols=105 Identities=24% Similarity=0.423 Sum_probs=91.6
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC---CEEEEeeeccCCCCceeccEEEEEEeCC---CceEEEEEE
Q 045058 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYG---HKWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVGVF 666 (1005)
Q Consensus 593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g---~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~v~ 666 (1005)
+..|.|.|+|++|+||+++ +..|.+||||++.++ ....||+++++++||+|||.|.|.+... ...|.|+||
T Consensus 13 ~~~~~L~V~v~~a~~L~~~---d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 13 KDMGILNVKLIQARNLQPR---DFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred CCCCEEEEEEEEeeCCCCC---CCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 4458999999999999965 457789999999983 3468999999999999999999998753 568999999
Q ss_pred eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058 667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706 (1005)
Q Consensus 667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 706 (1005)
|++.++ ++++||.+.|+|+++..+...+.||+|.
T Consensus 90 d~~~~~------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFS------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCC------CCceeEEEEEecccccCCCCcceEEECc
Confidence 998766 8999999999999998777889999985
No 96
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.66 E-value=1.8e-15 Score=147.70 Aligned_cols=118 Identities=22% Similarity=0.396 Sum_probs=100.6
Q ss_pred eEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEECCee-eeeeeecCCCCCeee
Q 045058 270 YFLYVRVVKARELPAMD------------------------------LTGSIDPFVEVKIGNYK-GITKHYEKNQNPQWH 318 (1005)
Q Consensus 270 ~~L~V~v~~a~~L~~~~------------------------------~~g~~dPyv~v~~~~~~-~kT~~~~~~~nP~wn 318 (1005)
|.|.|+|.+|++|+.+| ..|.+||||+|++++.. .+|++++++.||.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 78999999999999887 35678999999999865 699999999999999
Q ss_pred eEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc--cceEEEEEEEE
Q 045058 319 QVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK--IKGELMLAVWI 393 (1005)
Q Consensus 319 e~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~G~i~l~~~~ 393 (1005)
|+|.|.+.... ..|.|.|||++..++++||.+.+++.++..+ .....|++|.+..+.. ..|.|++++.|
T Consensus 87 E~F~~~~~~~~-~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g-----~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYA-SHVEFTVKDNDVVGAQLIGRAYIPVEDLLSG-----EPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCC-CEEEEEEEeCCCcCCcEEEEEEEEhHHccCC-----CCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 99999987654 5799999999955678999999999999764 3568999998765443 45799999887
No 97
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.66 E-value=6.9e-16 Score=151.23 Aligned_cols=110 Identities=25% Similarity=0.340 Sum_probs=92.1
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
..+.|.|+|++|+||+.++..|.+||||+|++. ..++||+++++++||+|||+|.|.+...+.+....|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 357999999999999999988999999999982 357899999999999999999998644444455689999999
Q ss_pred CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 113 (1005)
++. .++|++||++.+++.++...+.. ..|+.|.+.
T Consensus 105 ~d~-~~~d~~lG~v~i~l~~~~~~~~~-~~w~~~~~~ 139 (162)
T cd04020 105 HDK-LSSNDFLGGVRLGLGTGKSYGQA-VDWMDSTGE 139 (162)
T ss_pred CCC-CCCCceEEEEEEeCCccccCCCc-cccccCChH
Confidence 964 56899999999999998766543 578888643
No 98
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=2e-15 Score=144.24 Aligned_cols=122 Identities=26% Similarity=0.421 Sum_probs=99.5
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCC---------CCcEEEEEEEeC
Q 045058 270 YFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM---------QASVLEVVIKDK 340 (1005)
Q Consensus 270 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~---------~~~~l~v~V~d~ 340 (1005)
++|+|+|++|++|+..+..|.+||||++.++++.++|++++++.||.|||+|.|....+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 36899999999999999999999999999999999999999999999999999975332 125799999999
Q ss_pred C-CCCCceeEEEEEE-ceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEec
Q 045058 341 D-LVKDDFVGIVRFD-INEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGT 395 (1005)
Q Consensus 341 ~-~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 395 (1005)
+ .++|++||++.+. +..+... .......+|++|..... ..|+|++++.+.+
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~--~~~~~~~~W~~L~~~~~--~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLE--EDFPPKLQWFPIYKGGQ--SAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccC--CCCCCCceEEEeecCCC--chhheeEEeEEEE
Confidence 9 7789999999974 4433321 12356789999985433 5799999997754
No 99
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.66 E-value=6.3e-16 Score=140.81 Aligned_cols=102 Identities=24% Similarity=0.407 Sum_probs=92.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEE
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIV 351 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~ 351 (1005)
|.|+|++|++|+..+..+.+||||+++++++.++|++++++.||.|||.|.|.+.+.....|.|+|+|++. +++||++
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~--~~~iG~~ 79 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT--GKSLGSL 79 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--CCccEEE
Confidence 78999999999999888999999999999999999999999999999999999988766799999999876 8999999
Q ss_pred EEEceecCCCCCCCCCCCCeEEEeecC
Q 045058 352 RFDINEVPLRVPPDSPLAPEWYRLEDK 378 (1005)
Q Consensus 352 ~i~l~~l~~~~~~~~~~~~~w~~L~~~ 378 (1005)
.++|.++.... ....++||+|.+.
T Consensus 80 ~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 80 TLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEHHHhhccc---cceeeeeEecCCC
Confidence 99999998642 2457899999764
No 100
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.66 E-value=6e-16 Score=145.09 Aligned_cols=107 Identities=26% Similarity=0.366 Sum_probs=90.5
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG 79 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 79 (1005)
...|.|+|++|+||+.++..|.+||||.+.+. .+++||+++++ .||+|||+|.|.+...+.+....|.|.|||++.
T Consensus 15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~ 93 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVER 93 (124)
T ss_pred CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCC
Confidence 47899999999999999988999999998762 35789999888 999999999999434444667899999999964
Q ss_pred CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058 80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK 112 (1005)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 112 (1005)
.+++++||++.|+|+++...+. ...||+|++
T Consensus 94 -~~~~~~lG~~~i~L~~l~~~~~-~~~w~~L~p 124 (124)
T cd08389 94 -MRKERLIGEKVVPLSQLNLEGE-TTVWLTLEP 124 (124)
T ss_pred -cccCceEEEEEEeccccCCCCC-ceEEEeCCC
Confidence 5689999999999999976554 458999974
No 101
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=1.4e-15 Score=144.03 Aligned_cols=116 Identities=23% Similarity=0.326 Sum_probs=98.3
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEE
Q 045058 10 VVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGK 89 (1005)
Q Consensus 10 v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~ 89 (1005)
|++|++|+. ..|.+||||+|++++.+++|++++++.||+|||+|.|.+.... .....|.|+|||++. .++|++||+
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~-~~~d~~iG~ 77 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEK-VGRNRLIGS 77 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCC-CCCCceEEE
Confidence 789999998 6789999999999999999999999999999999999996542 234689999999954 458999999
Q ss_pred EEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 90 VCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 90 ~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
+.+++.++...+. ...|++|.+.+.. ..+|+|++++.|.+
T Consensus 78 ~~~~l~~l~~~~~-~~~~~~L~~~~~~-~~~~~l~l~~~~~~ 117 (127)
T cd08373 78 ATVSLQDLVSEGL-LEVTEPLLDSNGR-PTGATISLEVSYQP 117 (127)
T ss_pred EEEEhhHcccCCc-eEEEEeCcCCCCC-cccEEEEEEEEEeC
Confidence 9999999886544 4579999866543 45799999999877
No 102
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.66 E-value=1.7e-15 Score=144.89 Aligned_cols=123 Identities=20% Similarity=0.237 Sum_probs=98.2
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEE----C-CeEeeccccCCCCCCceeeEEEEEeccCc-----cccceEEEEE
Q 045058 6 LGVQVVGAHN--LLPKDGKGSSSAFVELYF----D-GQRFRTTIKENDLNPVWNESFYFNISDAS-----KLHYLTLEAY 73 (1005)
Q Consensus 6 l~V~v~~a~~--L~~~d~~g~~dpyv~v~~----~-~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-----~~~~~~l~v~ 73 (1005)
..++|+.|++ |+..+..+.+||||++++ + .++.||+++++|+||+|||+|.|.+...+ .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4567777777 667777889999999997 2 35899999999999999999999996543 2345679999
Q ss_pred EEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 74 IYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 74 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
|||++..+.+|++||++.++|..+...... ..|++|.... ..+.|++++++.+..
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~-~~~~~L~~~~--k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEI-HESVDLMDGR--KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcc-eEEEEhhhCC--CCcCCEEEEEEEecC
Confidence 999965445899999999999999776554 3599987432 267899999998765
No 103
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.66 E-value=7.5e-16 Score=145.33 Aligned_cols=106 Identities=25% Similarity=0.348 Sum_probs=89.9
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG 79 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 79 (1005)
.+.|+|+|++|+||+.++..|.+||||+|++.. .+++|+++++++||+|||+|.|.+...+ +....|.|+|||++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~-l~~~~l~~~V~d~d~ 93 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSE-LGNKTLVFSVYDFDR 93 (124)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHH-hCCCEEEEEEEeCCC
Confidence 478999999999999999889999999999843 4689999999999999999999986422 344689999999964
Q ss_pred CCCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058 80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE 111 (1005)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 111 (1005)
.+++++||++.+++.++... ...+.|++|+
T Consensus 94 -~~~~~~lG~~~i~l~~~~~~-~~~~~W~~l~ 123 (124)
T cd08385 94 -FSKHDLIGEVRVPLLTVDLG-HVTEEWRDLE 123 (124)
T ss_pred -CCCCceeEEEEEecCcccCC-CCcceEEEcc
Confidence 56899999999999998664 3446899985
No 104
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.66 E-value=7.6e-16 Score=145.58 Aligned_cols=108 Identities=26% Similarity=0.381 Sum_probs=91.1
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE---CCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF---DGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG 79 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~---~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 79 (1005)
.+.|.|+|++|+||+.++..|.+||||+|++ ++.+.+|+++++++||+|||+|.|.+...+.+....|.|+|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 5789999999999999998899999999998 3457899999999999999999998543333445689999999964
Q ss_pred CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058 80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK 112 (1005)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 112 (1005)
.+++++||++.+++.++..... ...|++|.+
T Consensus 95 -~~~~~~iG~~~i~l~~l~~~~~-~~~W~~l~~ 125 (125)
T cd08386 95 -FSRNDPIGEVSLPLNKVDLTEE-QTFWKDLKP 125 (125)
T ss_pred -CcCCcEeeEEEEecccccCCCC-cceEEecCC
Confidence 5689999999999999876443 458999863
No 105
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.65 E-value=1.3e-15 Score=142.84 Aligned_cols=118 Identities=23% Similarity=0.313 Sum_probs=95.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEEC-CEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYG-HKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN 676 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g-~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~ 676 (1005)
|+|+|++|++|+.+ +..+.+||||++.++ .+.+||+++++++||+|||.|.|++.. ...|.|+|||++.++.
T Consensus 2 l~v~v~~A~~L~~~---~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~--- 74 (123)
T cd08382 2 VRLTVLCADGLAKR---DLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKK--- 74 (123)
T ss_pred eEEEEEEecCCCcc---CCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCC---
Confidence 78999999999965 457889999999996 667899999999999999999999965 7799999999987651
Q ss_pred CCCCcccEEEEEEcccccCCC-EEeeeEeeeecCCC-CCceeeEEEEEE
Q 045058 677 GNKDLKIGKVRIRISTLETGR-IYTHSYPLLVLHPT-GVKKMGELHLAI 723 (1005)
Q Consensus 677 ~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~-~~~~~G~i~l~~ 723 (1005)
..|++||.+.++++++.... ....||+|...... .....|+|.+.+
T Consensus 75 -~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 -KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred -CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 12689999999999987554 33679999655442 222358887765
No 106
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=1.1e-15 Score=140.76 Aligned_cols=104 Identities=28% Similarity=0.509 Sum_probs=91.0
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCC----CCcEEEEEEEeCC-CC
Q 045058 269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM----QASVLEVVIKDKD-LV 343 (1005)
Q Consensus 269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~----~~~~l~v~V~d~~-~~ 343 (1005)
.+.|+|+|++|++|+ ++.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++ ++
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~ 78 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR 78 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence 478999999999998 57899999999999999999999999999999999987543 3468999999998 77
Q ss_pred CCceeEEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058 344 KDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK 378 (1005)
Q Consensus 344 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 378 (1005)
++++||++.++|.++... +++.....|++|.++
T Consensus 79 ~~~~iG~~~i~l~~v~~~--~~~~~~~~w~~L~~~ 111 (111)
T cd04011 79 SDTLIGSFKLDVGTVYDQ--PDHAFLRKWLLLTDP 111 (111)
T ss_pred cCCccEEEEECCccccCC--CCCcceEEEEEeeCc
Confidence 899999999999999764 345678999999863
No 107
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=2.1e-15 Score=142.72 Aligned_cols=114 Identities=20% Similarity=0.362 Sum_probs=98.5
Q ss_pred EEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC---CceEEEEEEeCCCcCCCCCCC
Q 045058 602 ILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVGVFDNSQLGEKSNGN 678 (1005)
Q Consensus 602 i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~v~d~~~~~~~~~~~ 678 (1005)
|++|++|+. ..|.+||||++.+++..++|++++++.||+|||.|.|++..+ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~------ 70 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG------ 70 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC------
Confidence 688999985 467899999999999999999999999999999999999753 679999999998765
Q ss_pred CCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeec
Q 045058 679 KDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCT 728 (1005)
Q Consensus 679 ~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~ 728 (1005)
+|++||.+.++|+++..+.....|++|.... +....|+|+++++|.+.
T Consensus 71 ~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~ 118 (127)
T cd08373 71 RNRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPP 118 (127)
T ss_pred CCceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCC
Confidence 8899999999999999888888999997433 22235999999998653
No 108
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.65 E-value=1.1e-15 Score=146.51 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=88.2
Q ss_pred EEEEEEEEecCCCCCCCCC-----------CCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC--CceEEE
Q 045058 597 ILELGILNAVGLHPMKTRD-----------GRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP--ATVLTV 663 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~-----------~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~l~i 663 (1005)
.|.|+|++|++|+.+|... ..+.+||||+|.++++..||+++++++||+|||+|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999886321 235789999999999999999999999999999999998654 569999
Q ss_pred EEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCE-------EeeeEeee
Q 045058 664 GVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRI-------YTHSYPLL 706 (1005)
Q Consensus 664 ~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~ 706 (1005)
+|||+|..+ +|++||++.|+|+++..... -..|+.|.
T Consensus 81 ~v~D~d~~~------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly 124 (151)
T cd04018 81 QIRDWDRVG------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY 124 (151)
T ss_pred EEEECCCCC------CCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence 999999776 89999999999999876542 24777776
No 109
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.65 E-value=7e-16 Score=141.96 Aligned_cols=99 Identities=23% Similarity=0.352 Sum_probs=85.7
Q ss_pred eEEEEEEEEecCCCCCCCCCCC-CCCCcEEEEEEC---CEEEEeeeccCCCCceeccEEEEEEeC----CCceEEEEEEe
Q 045058 596 GILELGILNAVGLHPMKTRDGR-GTSDTYCVAKYG---HKWVRTRTLVDNLSPKYNEQYTWEVFD----PATVLTVGVFD 667 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~-~~~dpyv~~~~g---~~~~~T~~~~~t~nP~wne~f~~~v~~----~~~~l~i~v~d 667 (1005)
|.|+|+|++|+||++++ .. +.+||||++.+. ....+|+++++++||+|||.|.|.+.. ....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~d---~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKAD---FGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCccc---CCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 78999999999999764 45 789999999983 346899999999999999999998864 35689999999
Q ss_pred CCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058 668 NSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706 (1005)
Q Consensus 668 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 706 (1005)
++.++ +|++||.+.++|++|... .+|+++.
T Consensus 78 ~d~~~------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 78 SDRFT------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCCCC------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 99776 899999999999999854 4788885
No 110
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.65 E-value=2.9e-15 Score=141.83 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=97.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD 80 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~ 80 (1005)
..|+|+|++|++|+.++..|.+||||+|.+.+ ..+||+++++++||+|||+|.|.+.... ...|.|+|||++.
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~- 76 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSF- 76 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCC-
Confidence 36899999999999999999999999999864 3689999999999999999999986642 3589999999954
Q ss_pred CCCCcccEEEEEeCCcccCC--CCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 81 TNSRSFLGKVCLTGNSFVPL--SDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 81 ~~~d~~lG~~~i~l~~l~~~--~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
.+++++||++.++|.++... +.....|++|.+ +|++++.+.+..
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~ 122 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEG 122 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEee
Confidence 45899999999999886432 334468999964 588998887765
No 111
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.65 E-value=1.2e-15 Score=144.65 Aligned_cols=107 Identities=29% Similarity=0.418 Sum_probs=90.4
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|+|+|++|+||+.++..+.+||||+|++. ..+++|++++++.||+|||+|.|.+...+ +....|.|.|||+
T Consensus 15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~-l~~~~l~i~v~~~ 93 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE-LKRRTLDVAVKNS 93 (127)
T ss_pred CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH-hcCCEEEEEEEEC
Confidence 47899999999999999988999999999984 35789999999999999999999986432 4456899999998
Q ss_pred CCC-CCCCcccEEEEEeCCcccCCCCceeeeEecc
Q 045058 78 IGD-TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLE 111 (1005)
Q Consensus 78 ~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 111 (1005)
+.. .+++++||++.+++.++.... ....||+|+
T Consensus 94 ~~~~~~~~~~iG~~~i~l~~l~~~~-~~~~W~~L~ 127 (127)
T cd04030 94 KSFLSREKKLLGQVLIDLSDLDLSK-GFTQWYDLT 127 (127)
T ss_pred CcccCCCCceEEEEEEecccccccC-CccceEECc
Confidence 643 258999999999999986544 345799984
No 112
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.64 E-value=1.2e-15 Score=141.81 Aligned_cols=111 Identities=19% Similarity=0.309 Sum_probs=93.3
Q ss_pred ceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeeeEEEEeec--CCCC
Q 045058 259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN------YKGITKHYEKNQNPQWHQVFAFSRD--RMQA 330 (1005)
Q Consensus 259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~~~nP~wne~f~f~~~--~~~~ 330 (1005)
++..|+. ..+.|.|+|++|+||+..+..+.+||||++++.+ .++||++++++.||+|||+|.|++. ++..
T Consensus 5 ~sL~Y~~--~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~ 82 (124)
T cd08680 5 IGLRYDS--GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQ 82 (124)
T ss_pred EEEEECC--CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhc
Confidence 4455554 4488999999999999998889999999999864 2578999999999999999999975 4567
Q ss_pred cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058 331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL 375 (1005)
Q Consensus 331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 375 (1005)
..|.|+|||++ .+++++||++.|+|.++.... .....||+|
T Consensus 83 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~----~~~~~Wy~l 124 (124)
T cd08680 83 KTLQVDVCSVGPDQQEECLGGAQISLADFESSE----EMSTKWYNL 124 (124)
T ss_pred CEEEEEEEeCCCCCceeEEEEEEEEhhhccCCC----ccccccccC
Confidence 89999999999 678999999999999996542 346789875
No 113
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.64 E-value=1.1e-15 Score=144.46 Aligned_cols=118 Identities=19% Similarity=0.342 Sum_probs=97.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeccccC-CCCCCceeeEEEEEeccCcc-ccceEEEEEEEeCCCCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-QRFRTTIKE-NDLNPVWNESFYFNISDASK-LHYLTLEAYIYNNIGDT 81 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~T~v~~-~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~d~~~~~ 81 (1005)
.|+|+|++|++|+..+..+.+||||+|++++ ++++|++.. ++.||+|||.|.|.+..... .....|.|+|||++. .
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-~ 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-S 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-C
Confidence 3899999999999998889999999999988 789999875 68999999999999865420 123689999999854 4
Q ss_pred CCCcccEEEEEeCCcccCCCCc----eeeeEecccCCCcceeeeEEEE
Q 045058 82 NSRSFLGKVCLTGNSFVPLSDS----VVLHYPLEKRGIFSHVRGELGL 125 (1005)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~----~~~w~~L~~~~~~~~~~G~i~l 125 (1005)
++|++||++.+++.++...... ...||+|.++++ +.+|.|++
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g--~~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG--KPQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC--CcCeEEeC
Confidence 5899999999999998765542 357999998764 67898864
No 114
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.63 E-value=8.9e-16 Score=142.40 Aligned_cols=102 Identities=21% Similarity=0.312 Sum_probs=86.8
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeC--CCceEEEEEEe
Q 045058 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFD--PATVLTVGVFD 667 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~l~i~v~d 667 (1005)
.+.|.|+|++|+||++++ .|.+||||++.+.+ .+.||+++.++.||+|||+|.|++.. ....|.|+|||
T Consensus 11 ~~~L~V~Vi~ar~L~~~~----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~ 86 (119)
T cd08685 11 NRKLTLHVLEAKGLRSTN----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWN 86 (119)
T ss_pred CCEEEEEEEEEECCCCCC----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEEC
Confidence 378999999999999764 57899999999953 35699999999999999999999864 24579999999
Q ss_pred CCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEee
Q 045058 668 NSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPL 705 (1005)
Q Consensus 668 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 705 (1005)
++... ..+++||.+.|+|.++..+.....||.|
T Consensus 87 ~~~~~-----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS-----RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCCc-----CCCEEEEEEEecHHHhccCccccceEeC
Confidence 97643 2478999999999999888778899986
No 115
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.63 E-value=2.5e-15 Score=136.61 Aligned_cols=93 Identities=19% Similarity=0.302 Sum_probs=81.7
Q ss_pred eEEEEEEEEeecCCCCCCC----CCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCC-CCcEEEEEEEeCC-CC
Q 045058 270 YFLYVRVVKARELPAMDLT----GSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRM-QASVLEVVIKDKD-LV 343 (1005)
Q Consensus 270 ~~L~V~v~~a~~L~~~~~~----g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~-~~~~l~v~V~d~~-~~ 343 (1005)
|+|.|+|++|++|+..+.. +.+||||+++++++.+||++++++.||+|||.|.|.+.+. ....|.|+|||++ .+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 5799999999999987632 3589999999999889999999999999999999987543 3358999999999 78
Q ss_pred CCceeEEEEEEceecCCCC
Q 045058 344 KDDFVGIVRFDINEVPLRV 362 (1005)
Q Consensus 344 ~d~~lG~~~i~l~~l~~~~ 362 (1005)
+|++||++.++|.++..+.
T Consensus 81 ~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCcceEEEEEEHHHHHhhC
Confidence 9999999999999998764
No 116
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.63 E-value=3.7e-15 Score=139.21 Aligned_cols=115 Identities=26% Similarity=0.427 Sum_probs=90.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d 84 (1005)
|.|+|++|+||+.+ |.+||||+|+++++ .++|+++++ .||+|||+|.|.+...+ .....|.|.+||++ ...++
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~-~~~~~l~i~v~d~~-~~~~~ 75 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPD-VTFFTLSFYNKDKR-SKDRD 75 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCcc-ccEEEEEEEEEecc-cCCCe
Confidence 78999999999876 78999999999986 479999988 99999999999986543 34468889999984 33466
Q ss_pred cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
.++|.+.|. .+.. +...+.||+|.++.......|+|++++.|
T Consensus 76 ~~~g~v~l~--~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 76 IVIGKVALS--KLDL-GQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred eEEEEEEec--CcCC-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 777776655 4333 33446899999876556788999999864
No 117
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.62 E-value=2.9e-15 Score=141.22 Aligned_cols=107 Identities=22% Similarity=0.360 Sum_probs=90.5
Q ss_pred CcEEEEEEEEeecCCCCC-CCCCCCcEEEEEEC---CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058 3 NLKLGVQVVGAHNLLPKD-GKGSSSAFVELYFD---GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI 78 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~---~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 78 (1005)
.+.|.|+|++|+||+.++ ..+.+||||+|++. ...++|+++++++||+|||+|.|.+...+ ++...|.|.|||++
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~-l~~~~l~i~v~d~~ 91 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKE-LQRRTLRLSVYDVD 91 (123)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHH-hcccEEEEEEEECC
Confidence 478999999999999998 68899999999983 34689999999999999999999986532 33468999999986
Q ss_pred CCCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058 79 GDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK 112 (1005)
Q Consensus 79 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 112 (1005)
. .+++++||++.++|.++...... ..|++|++
T Consensus 92 ~-~~~~~~iG~~~i~L~~l~~~~~~-~~w~~L~~ 123 (123)
T cd08390 92 R-FSRHCIIGHVLFPLKDLDLVKGG-VVWRDLEP 123 (123)
T ss_pred c-CCCCcEEEEEEEeccceecCCCc-eEEEeCCC
Confidence 4 45899999999999998776654 57999974
No 118
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=2.2e-15 Score=144.54 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=87.2
Q ss_pred EEEEEEEEeecCCCCCCC--------------CCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEE
Q 045058 5 KLGVQVVGAHNLLPKDGK--------------GSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTL 70 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~--------------g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l 70 (1005)
.|.|+|++|++|+.+|.. +.+||||+|.+++++.+|+++++++||+|||+|.|.+..++. ...|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence 478999999999998854 378999999999999999999999999999999999754331 3589
Q ss_pred EEEEEeCCCCCCCCcccEEEEEeCCcccCCCCc------eeeeEecccC
Q 045058 71 EAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDS------VVLHYPLEKR 113 (1005)
Q Consensus 71 ~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~------~~~w~~L~~~ 113 (1005)
.|+|||++. .++|++||++.+++.++...+.. ...|+.|-..
T Consensus 79 ~~~v~D~d~-~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 79 KIQIRDWDR-VGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEECCC-CCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 999999964 46999999999999998765532 2356666543
No 119
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.62 E-value=3.8e-15 Score=140.52 Aligned_cols=111 Identities=33% Similarity=0.496 Sum_probs=93.9
Q ss_pred ceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecC--CCCcEE
Q 045058 259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDR--MQASVL 333 (1005)
Q Consensus 259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~--~~~~~l 333 (1005)
++..|+. ..+.|.|+|++|+||+..+..+.+||||++++.+ ..++|++++++.||.|||+|.|.+.. +....|
T Consensus 7 ~~l~y~~--~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l 84 (124)
T cd08385 7 FSLDYDF--QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTL 84 (124)
T ss_pred EEEEEeC--CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEE
Confidence 4445544 4488999999999999999889999999999864 35689999999999999999999753 345689
Q ss_pred EEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058 334 EVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376 (1005)
Q Consensus 334 ~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 376 (1005)
.|+|||++ ++++++||++.+++.++..+ ....+|++|+
T Consensus 85 ~~~V~d~d~~~~~~~lG~~~i~l~~~~~~-----~~~~~W~~l~ 123 (124)
T cd08385 85 VFSVYDFDRFSKHDLIGEVRVPLLTVDLG-----HVTEEWRDLE 123 (124)
T ss_pred EEEEEeCCCCCCCceeEEEEEecCcccCC-----CCcceEEEcc
Confidence 99999998 77899999999999998764 4578999986
No 120
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.62 E-value=3e-15 Score=139.21 Aligned_cols=94 Identities=21% Similarity=0.319 Sum_probs=83.2
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeC--CCceEEEEEEeCCC
Q 045058 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD--PATVLTVGVFDNSQ 670 (1005)
Q Consensus 593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~--~~~~l~i~v~d~~~ 670 (1005)
...|.|+|+|++|+||+. +..+.+||||+|+++++.+||+++++++||+|||+|.|.... ....|.|+|||++.
T Consensus 25 ~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 25 RGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred CCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 567999999999999973 456789999999999999999999999999999999998543 46799999999997
Q ss_pred cCCCCCCCCCcccEEEEEEcccccCC
Q 045058 671 LGEKSNGNKDLKIGKVRIRISTLETG 696 (1005)
Q Consensus 671 ~~~~~~~~~d~~lG~~~i~l~~l~~~ 696 (1005)
++ +|++||++.++|.....+
T Consensus 101 ~s------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 101 GW------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CC------CCCeeEEEEEEecCCcee
Confidence 76 899999999999976644
No 121
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.62 E-value=3.7e-15 Score=140.52 Aligned_cols=109 Identities=18% Similarity=0.190 Sum_probs=92.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCC-CCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKEN-DLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~-t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
|.|.|+|++|+||+..+..+.+||||+|+++++.++|++..+ +.||+|||+|.|.+..........|.|+|||++. .+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-~~ 79 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-FS 79 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-CC
Confidence 579999999999999888889999999999999899998774 8999999999999976532123589999999954 55
Q ss_pred CCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
+|++||++.+++.++...+.. +.|++|.+.+
T Consensus 80 ~d~~iG~~~i~l~~l~~~~~~-~~~~~l~p~~ 110 (124)
T cd04049 80 DDDFIGEATIHLKGLFEEGVE-PGTAELVPAK 110 (124)
T ss_pred CCCeEEEEEEEhHHhhhCCCC-cCceEeeccc
Confidence 899999999999998765543 5799998763
No 122
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.62 E-value=3.4e-15 Score=140.76 Aligned_cols=105 Identities=30% Similarity=0.427 Sum_probs=88.2
Q ss_pred CcEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 3 NLKLGVQVVGAHNLLPKD-GKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d-~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
.+.|.|+|++|+||+.++ ..|.+||||+|++.. .+++|++++++.||+|||+|.|.+...+ +....|.|.|||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~-l~~~~l~i~v~d 91 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ-LETRTLQLSVWH 91 (123)
T ss_pred CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHH-hCCCEEEEEEEe
Confidence 478999999999999988 778999999999831 4689999999999999999999986532 345689999999
Q ss_pred CCCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL 110 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 110 (1005)
++. .+++++||++.++|.++..... ...||+|
T Consensus 92 ~~~-~~~~~~iG~~~i~l~~l~~~~~-~~~w~~l 123 (123)
T cd08521 92 HDR-FGRNTFLGEVEIPLDSWDLDSQ-QSEWYPL 123 (123)
T ss_pred CCC-CcCCceeeEEEEecccccccCC-CccEEEC
Confidence 854 4588999999999999965443 4679987
No 123
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=8.1e-16 Score=166.94 Aligned_cols=120 Identities=28% Similarity=0.488 Sum_probs=106.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC---
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD--- 80 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~--- 80 (1005)
..++++|++|.||..+|++|++||||.+.+++.+.||+++...+||+|||.|.|+..+.. ..|.++|||.|+.
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst----drikvrvwded~dlks 370 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST----DRIKVRVWDEDNDLKS 370 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC----ceeEEEEecCcccHHH
Confidence 689999999999999999999999999999999999999999999999999999997765 4899999998654
Q ss_pred -------CCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058 81 -------TNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT 130 (1005)
Q Consensus 81 -------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 130 (1005)
..+|+|||+..|.+..|. ..++.||.|+++..++.++|-|++.+.+.
T Consensus 371 klrqkl~resddflgqtvievrtls---gemdvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEecc---cchhhhcchhhccchhhccceEEEEEEEE
Confidence 236899999999977763 34468999999999999999998877654
No 124
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.61 E-value=4.6e-15 Score=141.84 Aligned_cols=92 Identities=30% Similarity=0.518 Sum_probs=84.2
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC
Q 045058 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK 674 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~ 674 (1005)
+|.|+|+|++|+||+..+ . +.+||||++.+|++.++|+++++++||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d---~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRD---F-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCC---C-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 489999999999998653 3 7899999999999999999999999999999999999999889999999999876
Q ss_pred CCCCCCcccEEEEEEcccccCC
Q 045058 675 SNGNKDLKIGKVRIRISTLETG 696 (1005)
Q Consensus 675 ~~~~~d~~lG~~~i~l~~l~~~ 696 (1005)
+|++||.+.+++.++...
T Consensus 75 ----~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ----KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ----CCCEEEEEEEEHHHhhhh
Confidence 899999999999887653
No 125
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.61 E-value=5.1e-15 Score=139.56 Aligned_cols=102 Identities=23% Similarity=0.364 Sum_probs=91.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccC-CCCceeccEEEEEEeCC----CceEEEEEEeCCC
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVD-NLSPKYNEQYTWEVFDP----ATVLTVGVFDNSQ 670 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~-t~nP~wne~f~~~v~~~----~~~l~i~v~d~~~ 670 (1005)
|.|+|+|++|+||+..+ ..+.+||||++.+++...+|+++.+ +.||.|||.|.|.+..+ ...|.|+|||++.
T Consensus 1 g~L~V~V~~A~~L~~~~---~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTD---FLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCC---CCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 78999999999999754 4678999999999999899999884 89999999999999876 5789999999987
Q ss_pred cCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058 671 LGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706 (1005)
Q Consensus 671 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 706 (1005)
++ ++++||.+.|+|+++..+...+.||+|.
T Consensus 78 ~~------~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 78 FS------DDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred CC------CCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 65 7899999999999998877778999996
No 126
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=6.1e-15 Score=139.50 Aligned_cols=110 Identities=35% Similarity=0.546 Sum_probs=90.8
Q ss_pred ceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeecC---CCC
Q 045058 259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRDR---MQA 330 (1005)
Q Consensus 259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~~---~~~ 330 (1005)
++..|+ ...+.|.|+|++|++|+..+..+.+||||++++.+ ..++|++++++.||.|||+|.|.+.. +..
T Consensus 7 ~~l~~~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~ 84 (125)
T cd04031 7 IQLWYD--KVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKE 84 (125)
T ss_pred EEEEEe--CCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCC
Confidence 344444 34588999999999999999889999999999975 46789999999999999999998533 345
Q ss_pred cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058 331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376 (1005)
Q Consensus 331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 376 (1005)
..|.|+|||++ .+++++||++.++|.+... .....||+|+
T Consensus 85 ~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~------~~~~~W~~L~ 125 (125)
T cd04031 85 RTLEVTVWDYDRDGENDFLGEVVIDLADALL------DDEPHWYPLQ 125 (125)
T ss_pred CEEEEEEEeCCCCCCCcEeeEEEEecccccc------cCCcceEECc
Confidence 78999999999 6789999999999998332 2346899985
No 127
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.60 E-value=3.3e-15 Score=143.43 Aligned_cols=99 Identities=30% Similarity=0.404 Sum_probs=85.0
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----------------------------eEeeccccCCCCCCcee
Q 045058 2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----------------------------QRFRTTIKENDLNPVWN 52 (1005)
Q Consensus 2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----------------------------~~~~T~v~~~t~nP~Wn 52 (1005)
+.+.|.|+|++|+||.++|..|.+||||+|.+.. ..++|+++++++||+||
T Consensus 26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn 105 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN 105 (153)
T ss_pred CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc
Confidence 4578999999999999999999999999999853 23789999999999999
Q ss_pred eEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058 53 ESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPL 110 (1005)
Q Consensus 53 e~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 110 (1005)
|+|.|.+... ....|.|+|||++ +++||++.+++.++...+ .+.||+|
T Consensus 106 E~F~f~v~~~---~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~~--~d~W~~L 153 (153)
T cd08676 106 ETFRFEVEDV---SNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSCG--LDSWFKL 153 (153)
T ss_pred cEEEEEeccC---CCCEEEEEEEecC-----CCeEEEEEEEHHHhCCCC--CCCeEeC
Confidence 9999998643 2368999999984 889999999999988433 4679987
No 128
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.60 E-value=7.8e-15 Score=138.28 Aligned_cols=114 Identities=25% Similarity=0.345 Sum_probs=91.3
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCC-CCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEe-ec--CCCC
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLT-GSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFS-RD--RMQA 330 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~-~~--~~~~ 330 (1005)
.++..|+. ..+.|.|+|++|+||+..+.. +.+||||++++.+ ++.||++++++.||.|||+|.|. +. +...
T Consensus 6 ~~~l~y~~--~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~ 83 (128)
T cd08388 6 FFSLRYNS--EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQD 83 (128)
T ss_pred EEEEEEEC--CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCC
Confidence 44555554 348999999999999998875 8999999999964 45689999999999999999994 32 3445
Q ss_pred cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058 331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376 (1005)
Q Consensus 331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 376 (1005)
..|.|+|||++ ++++++||++.++|.++..... .....|.+|.
T Consensus 84 ~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~---~~~~~~~~~~ 127 (128)
T cd08388 84 LSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNE---GELLVSREIQ 127 (128)
T ss_pred CEEEEEEEEcCCCCCCceeEEEEEeccccCCCCC---ceEEEEEecc
Confidence 68999999998 7889999999999999976421 2356677664
No 129
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.60 E-value=6.1e-15 Score=139.65 Aligned_cols=88 Identities=27% Similarity=0.338 Sum_probs=77.6
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEEC---C--eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIG---N--QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG 507 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg---~--~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~ 507 (1005)
.|.|+|++|+||+..+..+.+||||++++. . .+.||++++ ++.||.|||.|.|.+... .+..|.|+|||+|.
T Consensus 16 ~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k-~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~ 94 (136)
T cd08406 16 RLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKR-DDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTE 94 (136)
T ss_pred EEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCcccc-CCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCC
Confidence 799999999999999988999999999992 2 256788886 999999999999998654 56689999999999
Q ss_pred CCCCceeEEEEEcccc
Q 045058 508 PGKDEIIGRVIIPLSA 523 (1005)
Q Consensus 508 ~~~d~~iG~~~i~l~~ 523 (1005)
.+++++||++.|+...
T Consensus 95 ~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 95 DGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCeeEEEEECCCC
Confidence 9999999999998764
No 130
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.60 E-value=6.2e-15 Score=135.85 Aligned_cols=107 Identities=26% Similarity=0.403 Sum_probs=92.9
Q ss_pred CceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCcccccEEEEEeeCCC----CCeEEEEEEecc
Q 045058 431 PRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEPF----EDHLVLTVEDRV 506 (1005)
Q Consensus 431 ~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~~P~w~e~f~f~v~~~~----~~~l~i~V~d~d 506 (1005)
|+.+.|+|+|++|+||+ ++.+||||+++++++.++|++++ ++.||.|||.|.|.+..+. ...|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKK-GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEe-ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 35678999999999998 57799999999999999999986 8999999999999986542 468999999999
Q ss_pred CCCCCceeEEEEEcccccccccccccccceeEEccCC
Q 045058 507 GPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543 (1005)
Q Consensus 507 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 543 (1005)
.++++++||++.++|+++.... ++.....|++|..+
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~~-~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQP-DHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCCC-CCcceEEEEEeeCc
Confidence 9888999999999999997653 44567899999753
No 131
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.60 E-value=9.4e-15 Score=138.35 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=96.7
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE-eeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC-
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQR-FRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT- 81 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~- 81 (1005)
..|.|.|++|++|+.++ +|||+|.+++.+ .||+++.++.||.|||+|.|..... ...|.|.||..++..
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~~~~~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRESDKKK 81 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEccCccc
Confidence 46899999999998865 799999999987 6999999999999999999985432 247999998764332
Q ss_pred --CCCcccEEEEEeCCcccCCCCceeeeEecccCCCcc--------eeeeEEEEEEEEec
Q 045058 82 --NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFS--------HVRGELGLKVYITD 131 (1005)
Q Consensus 82 --~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~--------~~~G~i~l~~~~~~ 131 (1005)
.++.+||.+.|++.++.. +...+.||+|.+..+.+ ...|.|++++.|.+
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~-~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSS-RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred cccCCcEEEEEEEEHHHhcC-CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 268999999999999885 44567899999876543 45589999999876
No 132
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=7.8e-15 Score=139.13 Aligned_cols=112 Identities=25% Similarity=0.445 Sum_probs=94.1
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeec--CCCC
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRD--RMQA 330 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~--~~~~ 330 (1005)
.++..|+ ...+.|.|+|++|+||+..+..+.+||||++++.+ ..++|++++++.||.|||+|.|.+. ++..
T Consensus 6 ~~~l~y~--~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~ 83 (127)
T cd04030 6 QLTIRYS--SQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKR 83 (127)
T ss_pred EEEEEEe--CCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcC
Confidence 3445554 44589999999999999999889999999999963 5679999999999999999999974 3445
Q ss_pred cEEEEEEEeCC-C--CCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058 331 SVLEVVIKDKD-L--VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376 (1005)
Q Consensus 331 ~~l~v~V~d~~-~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 376 (1005)
..|.|.|||++ . +++++||++.++|.++..+ .....||+|.
T Consensus 84 ~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~-----~~~~~W~~L~ 127 (127)
T cd04030 84 RTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLS-----KGFTQWYDLT 127 (127)
T ss_pred CEEEEEEEECCcccCCCCceEEEEEEeccccccc-----CCccceEECc
Confidence 78999999998 4 5899999999999998654 3568899874
No 133
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.60 E-value=2.3e-15 Score=142.22 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=87.1
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC--E---EEEeeeccCCCCceeccEEEEEEeC---CCceEEEE
Q 045058 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH--K---WVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVG 664 (1005)
Q Consensus 593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~--~---~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~ 664 (1005)
+..|.|.|.|++|+||.+++.. ..+.+||||++.+.+ + +.||+++++++||+|||.|.|.+.. ....|.|+
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~-~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLK-LLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCCeEEEEEEEecCCCccccC-CCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 4568999999999999987631 234489999999843 2 4689999999999999999999975 25689999
Q ss_pred EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeec
Q 045058 665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVL 708 (1005)
Q Consensus 665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 708 (1005)
|||+|.++ ++++||.+.+++.. .|....+|..+...
T Consensus 91 V~d~d~~~------~~d~iG~v~lg~~~--~g~~~~hW~~ml~~ 126 (138)
T cd08407 91 VLNQDSPG------QSLPLGRCSLGLHT--SGTERQHWEEMLDN 126 (138)
T ss_pred EEeCCCCc------CcceeceEEecCcC--CCcHHHHHHHHHhC
Confidence 99999876 89999999999975 44455788877643
No 134
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.60 E-value=1.1e-14 Score=137.02 Aligned_cols=117 Identities=25% Similarity=0.329 Sum_probs=95.5
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
-.|.|+|++|+ |...+..+.+||||+|+++++ .++|+++++++||+|||+|.|.+... ..|.|+|||++. .+
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~~-----~~l~~~V~d~~~-~~ 74 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTPQ-----STLEFKVWSHHT-LK 74 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCCC-----CEEEEEEEeCCC-CC
Confidence 46899999999 655666788999999999988 89999999999999999999998532 489999999954 56
Q ss_pred CCcccEEEEEeCCcccCCCC--c--eeeeEecccCCC-cceeeeEEEEEE
Q 045058 83 SRSFLGKVCLTGNSFVPLSD--S--VVLHYPLEKRGI-FSHVRGELGLKV 127 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~--~--~~~w~~L~~~~~-~~~~~G~i~l~~ 127 (1005)
.|++||++.++|.++..... . ...|++|...+. .+...|++.+.+
T Consensus 75 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 89999999999999864321 1 224899986653 457789998875
No 135
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.60 E-value=1.3e-14 Score=142.26 Aligned_cols=131 Identities=22% Similarity=0.318 Sum_probs=104.9
Q ss_pred ceEEEEEEEEeccCCcccccccCCCCCCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEE
Q 045058 384 KGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI 463 (1005)
Q Consensus 384 ~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l 463 (1005)
+|+|.+++.|.++..+.... ...+..+.|.|+|++|+||+..+..+.+||||++.+
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~------------------------~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l 56 (162)
T cd04020 1 RGELKVALKYVPPESEGALK------------------------SKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYL 56 (162)
T ss_pred CceEEEEEEecCcccccccc------------------------ccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEE
Confidence 49999999998765321110 022345689999999999999998899999999998
Q ss_pred -----CCeEEeeecccCCCCCcccccEEEEEeeCC---CCCeEEEEEEeccCCCCCceeEEEEEcccccccccccccccc
Q 045058 464 -----GNQVLKTKICQARTLSAVWNEDLLFVAAEP---FEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKRADERIIHS 535 (1005)
Q Consensus 464 -----g~~~~kT~~~~~~t~~P~w~e~f~f~v~~~---~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~ 535 (1005)
+...++|++++ ++.||.|||.|.|.+... .+..|.|+|||++.++++++||++.+++.++.... ...
T Consensus 57 ~~~~~~~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~----~~~ 131 (162)
T cd04020 57 LPDKSKKSKQKTPVVK-KSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYG----QAV 131 (162)
T ss_pred EcCCCCCcceeCCccC-CCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCC----Ccc
Confidence 34678999996 899999999999985322 34579999999999989999999999999987543 357
Q ss_pred eeEEccCC
Q 045058 536 RWFNLEKP 543 (1005)
Q Consensus 536 ~w~~L~~~ 543 (1005)
.|+.+.+.
T Consensus 132 ~w~~~~~~ 139 (162)
T cd04020 132 DWMDSTGE 139 (162)
T ss_pred ccccCChH
Confidence 88887654
No 136
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.60 E-value=5.6e-15 Score=139.89 Aligned_cols=105 Identities=24% Similarity=0.378 Sum_probs=86.0
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
..+|.|+|++|+||..++..|.+||||+|++.. .+.||+++++++||+|||+|.|.+... .+....|.|.|||+
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~-~l~~~~l~~~V~~~ 92 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI-VLQDLSLRVTVAES 92 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH-HhCCcEEEEEEEeC
Confidence 468999999999999999899999999999832 267899999999999999999998654 36678999999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK 112 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 112 (1005)
+. .+++++||++.|+... .+.....|..+..
T Consensus 93 d~-~~~~~~iG~v~lg~~~---~g~~~~hW~~ml~ 123 (136)
T cd08406 93 TE-DGKTPNVGHVIIGPAA---SGMGLSHWNQMLA 123 (136)
T ss_pred CC-CCCCCeeEEEEECCCC---CChhHHHHHHHHH
Confidence 64 5689999999998653 2333456866543
No 137
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.60 E-value=1.8e-14 Score=137.96 Aligned_cols=118 Identities=24% Similarity=0.339 Sum_probs=92.0
Q ss_pred EEEEEEEecC--CCCCCCCCCCCCCCcEEEEEE-----CCEEEEeeeccCCCCceeccEEEEEEeCC---------CceE
Q 045058 598 LELGILNAVG--LHPMKTRDGRGTSDTYCVAKY-----GHKWVRTRTLVDNLSPKYNEQYTWEVFDP---------ATVL 661 (1005)
Q Consensus 598 l~v~i~~a~~--L~~~~~~~~~~~~dpyv~~~~-----g~~~~~T~~~~~t~nP~wne~f~~~v~~~---------~~~l 661 (1005)
..++|..|+| |+. .+..+.+||||++.+ +.+.+||+++++|+||+|||+|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~---~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPS---GWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCC---CcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3555666666 554 345778999999987 34578999999999999999999999644 3479
Q ss_pred EEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058 662 TVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 662 ~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
.|+|||++.+. .+|++||++.|+|+.+..+.....|++|.... ....|.|+++++..
T Consensus 81 ~~~V~d~~~f~-----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~---k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL-----RSDKLLGTAQVKLEPLETKCEIHESVDLMDGR---KATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc-----cCCCeeEEEEEEcccccccCcceEEEEhhhCC---CCcCCEEEEEEEec
Confidence 99999998653 27999999999999998876667899986211 12258999999863
No 138
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=9.3e-15 Score=137.07 Aligned_cols=111 Identities=23% Similarity=0.345 Sum_probs=93.0
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEe-ec--CCCCc
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFS-RD--RMQAS 331 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~-~~--~~~~~ 331 (1005)
.++..|+.. ...|.|+|++|+||+..+.+|.+||||++.+.+ ++.||+++++ .||+|||+|.|. +. ++...
T Consensus 6 ~~sl~Y~~~--~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~ 82 (124)
T cd08389 6 DVAFEYDPS--ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNM 82 (124)
T ss_pred EEEEEECCC--CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccC
Confidence 445556543 488999999999999999889999999988754 4578998877 999999999998 53 44567
Q ss_pred EEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058 332 VLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376 (1005)
Q Consensus 332 ~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 376 (1005)
.|.|+|||++ ++++++||++.++|.++..+ .....|++|.
T Consensus 83 ~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~-----~~~~~w~~L~ 123 (124)
T cd08389 83 ALRFRLYGVERMRKERLIGEKVVPLSQLNLE-----GETTVWLTLE 123 (124)
T ss_pred EEEEEEEECCCcccCceEEEEEEeccccCCC-----CCceEEEeCC
Confidence 8999999999 78899999999999999664 4578899986
No 139
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.60 E-value=1.2e-14 Score=137.38 Aligned_cols=88 Identities=25% Similarity=0.346 Sum_probs=76.2
Q ss_pred EEEEEEEEeeeCCCCCC--CCCCCcEEEEEECC-----eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEec
Q 045058 435 YVRVNVVEAQDLVPTEK--NHFPDVYVKAQIGN-----QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDR 505 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~--~~~~dpyv~v~lg~-----~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~ 505 (1005)
.|.|.|++|+||+.++. .+.+||||++++.. .+.||++.+ ++.||+|||.|.|.+... .+..|.|+|||+
T Consensus 16 ~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k-~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~ 94 (138)
T cd08407 16 RLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAK-HKINPVWNEMIMFELPSELLAASSVELEVLNQ 94 (138)
T ss_pred eEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceee-CCCCCccccEEEEECCHHHhCccEEEEEEEeC
Confidence 79999999999999883 34589999999943 256888886 999999999999998654 356899999999
Q ss_pred cCCCCCceeEEEEEcccc
Q 045058 506 VGPGKDEIIGRVIIPLSA 523 (1005)
Q Consensus 506 d~~~~d~~iG~~~i~l~~ 523 (1005)
|.++++++||++.+++..
T Consensus 95 d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 95 DSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCcCcceeceEEecCcC
Confidence 999999999999999965
No 140
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.60 E-value=6.4e-15 Score=139.18 Aligned_cols=117 Identities=23% Similarity=0.356 Sum_probs=99.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eeeeeeeec-CCCCCeeeeEEEEeecCCC----CcEEEEEEEeCC-CCC
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN-YKGITKHYE-KNQNPQWHQVFAFSRDRMQ----ASVLEVVIKDKD-LVK 344 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~-~~~nP~wne~f~f~~~~~~----~~~l~v~V~d~~-~~~ 344 (1005)
|.|+|++|++|+..+..+.+||||++++++ +..+|+++. ++.||.|||.|.|.+.+.. ...|.|+|||++ +++
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~ 81 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLG 81 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCC
Confidence 789999999999998889999999999998 788999875 4899999999999987663 578999999998 688
Q ss_pred CceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEE
Q 045058 345 DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELML 389 (1005)
Q Consensus 345 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l 389 (1005)
+++||++.+++.++..+...+......||+|....+ +..|.|.+
T Consensus 82 ~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g-~~~G~~~~ 125 (125)
T cd04051 82 DKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG-KPQGVLNF 125 (125)
T ss_pred CCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC-CcCeEEeC
Confidence 999999999999998765433335678999998664 36788764
No 141
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.60 E-value=1.6e-14 Score=138.11 Aligned_cols=90 Identities=26% Similarity=0.403 Sum_probs=81.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNS 83 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~ 83 (1005)
|.|+|+|++|+||..++. +.+||||+|++++++++|+++++++||+|||+|.|.+.++. ..|.|+|||++. +++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~----~~l~~~V~D~d~-~~~ 75 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM----APLKLEVFDKDT-FSK 75 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCC----CEEEEEEEECCC-CCC
Confidence 689999999999998887 88999999999999999999999999999999999997653 589999999954 568
Q ss_pred CcccEEEEEeCCcccC
Q 045058 84 RSFLGKVCLTGNSFVP 99 (1005)
Q Consensus 84 d~~lG~~~i~l~~l~~ 99 (1005)
|++||++.+++.++..
T Consensus 76 dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 76 DDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCEEEEEEEEHHHhhh
Confidence 9999999999988643
No 142
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.59 E-value=5.5e-15 Score=140.91 Aligned_cols=106 Identities=24% Similarity=0.412 Sum_probs=90.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeEeeccccCCCCCCceeeEEEEEeccC------------ccccceE
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFD----GQRFRTTIKENDLNPVWNESFYFNISDA------------SKLHYLT 69 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~~T~v~~~t~nP~Wne~f~f~v~~~------------~~~~~~~ 69 (1005)
|+|+|++|++|..+ ..|.+||||+|+++ +.+++|++++++.||.|||+|.|.+... +.+....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999988 78899999999998 6789999999999999999999998664 1234578
Q ss_pred EEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 70 LEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 70 l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
|.|+|||.+. .++++|||++.+++.++...+.. ..||+|.+++
T Consensus 80 l~i~V~d~~~-~~~~~~IG~~~i~l~~l~~~~~~-~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASM-VSGDDFLGEVRIPLQGLQQAGSH-QAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCc-CcCCcEEEEEEEehhhccCCCcc-cceEecCCcC
Confidence 9999999854 46899999999999998755443 5799999874
No 143
>PLN03008 Phospholipase D delta
Probab=99.59 E-value=6e-15 Score=171.02 Aligned_cols=126 Identities=25% Similarity=0.361 Sum_probs=107.7
Q ss_pred ceEEEEEEEEecCCCCCCC-------------C-----------------CC---------CCCCCcEEEEEECCE-EEE
Q 045058 595 IGILELGILNAVGLHPMKT-------------R-----------------DG---------RGTSDTYCVAKYGHK-WVR 634 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~-------------~-----------------~~---------~~~~dpyv~~~~g~~-~~~ 634 (1005)
-|.|.++|++|++|+.||- . .+ .++|||||+|.++++ ..|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 3889999999999886431 0 01 357899999999876 469
Q ss_pred eeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCc
Q 045058 635 TRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVK 714 (1005)
Q Consensus 635 T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~ 714 (1005)
|+++.+++||+|||+|.|.+.++...|+|+|+|+|.++ +++||.+.|||.+|..|...+.|++|.....+..+
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-------aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-------AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPK 165 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-------CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCC
Confidence 99999999999999999999998889999999999875 58999999999999999999999999876655555
Q ss_pred eeeEEEEEEEEee
Q 045058 715 KMGELHLAIRFSC 727 (1005)
Q Consensus 715 ~~G~i~l~~~~~~ 727 (1005)
..|+|+++++|.+
T Consensus 166 ~~~kl~v~lqf~p 178 (868)
T PLN03008 166 AETAIFIDMKFTP 178 (868)
T ss_pred CCcEEEEEEEEEE
Confidence 5689999999976
No 144
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=9.5e-15 Score=135.99 Aligned_cols=102 Identities=29% Similarity=0.389 Sum_probs=90.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCC
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEK 674 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~ 674 (1005)
|.|+|+|++|+||+..+ ..+.+||||++.+++ ...+|+++.++.||+|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLE---GVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCcc---CCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 78999999999999754 468899999999977 468999999999999999999999888789999999999766
Q ss_pred CCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058 675 SNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV 707 (1005)
Q Consensus 675 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 707 (1005)
+|++||.+.++|+++..+. .+.||-|..
T Consensus 76 ----~d~~IG~~~~~l~~l~~~~-~~~~~~~~~ 103 (120)
T cd04045 76 ----KDRSLGSVEINVSDLIKKN-EDGKYVEYD 103 (120)
T ss_pred ----CCCeeeEEEEeHHHhhCCC-CCceEEecC
Confidence 8899999999999998774 478888873
No 145
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.59 E-value=2.9e-14 Score=135.00 Aligned_cols=117 Identities=22% Similarity=0.371 Sum_probs=98.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCc
Q 045058 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNY---KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDD 346 (1005)
Q Consensus 271 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~ 346 (1005)
.|.|+|++|++|+..+..+.+||||++.+.+. .++|++++++.||.|||+|.|.+.......|.|+|||++ .++++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~ 81 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD 81 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence 57899999999999998999999999998753 579999999999999999999987755678999999999 66899
Q ss_pred eeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEec
Q 045058 347 FVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIGT 395 (1005)
Q Consensus 347 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 395 (1005)
+||++.++|.++.... +......|++|.. .|+|.+.+.+..
T Consensus 82 ~iG~~~i~l~~~~~~~--~~~~~~~w~~l~~------~g~i~l~~~~~~ 122 (126)
T cd04043 82 LCGRASLKLDPKRFGD--DGLPREIWLDLDT------QGRLLLRVSMEG 122 (126)
T ss_pred eEEEEEEecCHHHcCC--CCCCceEEEEcCC------CCeEEEEEEEee
Confidence 9999999998765431 1234678999974 288988887754
No 146
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.58 E-value=1.6e-14 Score=136.62 Aligned_cols=112 Identities=34% Similarity=0.527 Sum_probs=93.5
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---CeeeeeeeecCCCCCeeeeEEEEeec---CCCCc
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIG---NYKGITKHYEKNQNPQWHQVFAFSRD---RMQAS 331 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~~~nP~wne~f~f~~~---~~~~~ 331 (1005)
.++..|+ ...+.|.|+|++|+||+..+..+.+||||++++. ....+|++++++.||.|||+|.|... .+...
T Consensus 6 ~~~l~y~--~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~ 83 (125)
T cd08386 6 QFSVSYD--FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQR 83 (125)
T ss_pred EEEEEEC--CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCC
Confidence 3445554 3458899999999999999988999999999994 35679999999999999999999742 33456
Q ss_pred EEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEee
Q 045058 332 VLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLE 376 (1005)
Q Consensus 332 ~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 376 (1005)
.|.|+|||++ .+++++||++.+++.++... .....|+.|.
T Consensus 84 ~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~-----~~~~~W~~l~ 124 (125)
T cd08386 84 VLYLQVLDYDRFSRNDPIGEVSLPLNKVDLT-----EEQTFWKDLK 124 (125)
T ss_pred EEEEEEEeCCCCcCCcEeeEEEEecccccCC-----CCcceEEecC
Confidence 8999999999 77899999999999999864 3578899885
No 147
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.58 E-value=2.3e-14 Score=132.93 Aligned_cols=92 Identities=17% Similarity=0.325 Sum_probs=76.8
Q ss_pred ceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEE---CC--eEEeeecccCCCC-CcccccEEEEEeeCC-CCCeEEEEEEe
Q 045058 432 RLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQI---GN--QVLKTKICQARTL-SAVWNEDLLFVAAEP-FEDHLVLTVED 504 (1005)
Q Consensus 432 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l---g~--~~~kT~~~~~~t~-~P~w~e~f~f~v~~~-~~~~l~i~V~d 504 (1005)
..++|+|.|++|+||+.+...+.+||||+|.+ +. .+.||++++ +|. +|.|||.|.|.+..+ .+-.|.|+|||
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k-~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d 90 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVK-SSNGQVKWGETMIFPVTQQEHGIQFLIKLYS 90 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEE-CCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence 34489999999999999877777899999999 22 467888886 774 699999999999765 33478889999
Q ss_pred ccCCCCCceeEEEEEccccc
Q 045058 505 RVGPGKDEIIGRVIIPLSAI 524 (1005)
Q Consensus 505 ~d~~~~d~~iG~~~i~l~~l 524 (1005)
++..+++++||++.++.+..
T Consensus 91 ~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 91 RSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCCcCCceEEEEEECCccC
Confidence 99888999999999999763
No 148
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=1.7e-14 Score=134.17 Aligned_cols=112 Identities=30% Similarity=0.496 Sum_probs=93.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d 84 (1005)
|+|+|++|++|...+..|.+||||+|.+++. .++|+++.++.||+|||+|.|.+.... ...|.|+|||++. .+++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~-~~~~ 76 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDR-GGKD 76 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCC-CCCC
Confidence 5899999999999888889999999999764 589999999999999999999986532 3689999999954 4689
Q ss_pred cccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEE
Q 045058 85 SFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELG 124 (1005)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~ 124 (1005)
++||++.+++.++..... ...|++|.++++ ...|.+.
T Consensus 77 ~~iG~~~~~l~~l~~~~~-~~~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 77 DLLGSAYIDLSDLEPEET-TELTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred CceEEEEEEHHHcCCCCc-EEEEEECcCCCC--ccCceEE
Confidence 999999999999876443 468999987654 3456654
No 149
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.58 E-value=2e-14 Score=134.18 Aligned_cols=112 Identities=29% Similarity=0.473 Sum_probs=88.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeC---CCceEEEEEEeCCCcCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGVFDNSQLGE 673 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v~d~~~~~~ 673 (1005)
|+|+|++|+||+.. +.+||||+++++++ +++|+++++ .||.|||+|.|.+.. ....|.|.+||.+...
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999852 68999999999885 579999999 999999999999976 3457888888886433
Q ss_pred CCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 674 KSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 674 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
++..+|++.| ..+..+...+.||+|......+ ...|+|+|+++|
T Consensus 74 -----~~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 -----RDIVIGKVAL--SKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred -----CeeEEEEEEe--cCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 5666776555 4455566678999997554433 346999999875
No 150
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.57 E-value=1.4e-14 Score=136.50 Aligned_cols=110 Identities=21% Similarity=0.388 Sum_probs=91.8
Q ss_pred ceeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeecC--CCC
Q 045058 259 TASTYDLVERMYFLYVRVVKARELPAMD-LTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRDR--MQA 330 (1005)
Q Consensus 259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~~--~~~ 330 (1005)
++..|+ ...+.|.|+|++|+||+..+ ..+.+||||++++.+ .+.+|++++++.||.|||+|.|.+.. +..
T Consensus 5 ~~l~y~--~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~ 82 (123)
T cd08521 5 FSLSYN--YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLET 82 (123)
T ss_pred EEEEEe--CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCC
Confidence 444554 34589999999999999988 778999999999853 35789999999999999999998754 345
Q ss_pred cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058 331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL 375 (1005)
Q Consensus 331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 375 (1005)
..|.|+|||++ .+++++||++.++|.++..+ .....||+|
T Consensus 83 ~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~-----~~~~~w~~l 123 (123)
T cd08521 83 RTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLD-----SQQSEWYPL 123 (123)
T ss_pred CEEEEEEEeCCCCcCCceeeEEEEeccccccc-----CCCccEEEC
Confidence 68999999999 77899999999999999654 346889986
No 151
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=2.5e-14 Score=133.05 Aligned_cols=112 Identities=29% Similarity=0.402 Sum_probs=94.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCcCCCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-KWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQLGEKS 675 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~~~~~ 675 (1005)
|+|+|++|++|+..+ ..+.+||||++.+++ +.++|+++.++.||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~---~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSAD---RNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCCC---CCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 579999999999754 467889999999965 45799999999999999999999987 4679999999998765
Q ss_pred CCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEE
Q 045058 676 NGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHL 721 (1005)
Q Consensus 676 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l 721 (1005)
++++||++.+++.++..+.....|++|.. .|..+.|.+.+
T Consensus 75 ---~~~~iG~~~~~l~~l~~~~~~~~~~~L~~---~g~~~~~~~~~ 114 (115)
T cd04040 75 ---KDDLLGSAYIDLSDLEPEETTELTLPLDG---QGGGKLGAVFL 114 (115)
T ss_pred ---CCCceEEEEEEHHHcCCCCcEEEEEECcC---CCCccCceEEc
Confidence 89999999999999999888899999963 23234477654
No 152
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=2.6e-14 Score=133.04 Aligned_cols=104 Identities=20% Similarity=0.325 Sum_probs=89.2
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
|.|+|+|++|++|+..+..|.+||||+|++++. +++|+++.++.||+|||+|.|.+.... ..|.|+|||++. .+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~----~~L~v~v~d~~~-~~ 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN----QKITLEVMDYEK-VG 75 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCC----CEEEEEEEECCC-CC
Confidence 579999999999999998899999999999874 789999999999999999999986543 489999999954 56
Q ss_pred CCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
.|++||++.+++.++..... +.||.|-+.+
T Consensus 76 ~d~~IG~~~~~l~~l~~~~~--~~~~~~~~~~ 105 (120)
T cd04045 76 KDRSLGSVEINVSDLIKKNE--DGKYVEYDDE 105 (120)
T ss_pred CCCeeeEEEEeHHHhhCCCC--CceEEecCCC
Confidence 89999999999999877643 4587776554
No 153
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.56 E-value=2.4e-14 Score=137.55 Aligned_cols=100 Identities=29% Similarity=0.539 Sum_probs=88.3
Q ss_pred cceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----------------------------eeeeeeecCCCCCee
Q 045058 267 ERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNY-----------------------------KGITKHYEKNQNPQW 317 (1005)
Q Consensus 267 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-----------------------------~~kT~~~~~~~nP~w 317 (1005)
++.+.|.|+|++|++|...|.+|.+||||++.+.+. .++|++++++.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 456899999999999999999999999999998642 368999999999999
Q ss_pred eeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEe
Q 045058 318 HQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRL 375 (1005)
Q Consensus 318 ne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 375 (1005)
||+|.|.+..+....|.|+|||++ +++||++.+++.++.. .....||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~------~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS------CGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC------CCCCCeEeC
Confidence 999999998776689999999997 8999999999999973 246889986
No 154
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.55 E-value=1.1e-14 Score=139.43 Aligned_cols=107 Identities=22% Similarity=0.335 Sum_probs=88.2
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|.|+|++|+||+.+|..|.+||||+|++. + .+.||+++++++||+|||+|.|.+...+ .....|.|+|||+
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~-~~~~~l~~~v~d~ 92 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE-LEDISVEFLVLDS 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH-hCCCEEEEEEEEC
Confidence 46899999999999999999999999999984 2 2578999999999999999999986432 3456899999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
+. .+++++||++.+++.. . +.....|++|....
T Consensus 93 d~-~~~~~~iG~~~~~~~~-~--~~~~~~w~~l~~~~ 125 (136)
T cd08404 93 DR-VTKNEVIGRLVLGPKA-S--GSGGHHWKEVCNPP 125 (136)
T ss_pred CC-CCCCccEEEEEECCcC-C--CchHHHHHHHHhCC
Confidence 65 5689999999999888 2 33345799886543
No 155
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.55 E-value=1e-14 Score=139.41 Aligned_cols=106 Identities=27% Similarity=0.429 Sum_probs=87.9
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|.|+|++|+||+.+|..|.+||||+|++.+ .+++|+++++++||+|||+|.|.+...+ +....|.|+|||+
T Consensus 12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~-l~~~~l~~~V~d~ 90 (133)
T cd08384 12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSD-LAKKTLEITVWDK 90 (133)
T ss_pred CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHH-hCCCEEEEEEEeC
Confidence 478999999999999999889999999999842 3689999999999999999999986532 4456899999998
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 113 (1005)
+. .+++++||++.+++.. .++....|+++.+.
T Consensus 91 d~-~~~~~~lG~~~i~l~~---~~~~~~~W~~~l~~ 122 (133)
T cd08384 91 DI-GKSNDYIGGLQLGINA---KGERLRHWLDCLKN 122 (133)
T ss_pred CC-CCCccEEEEEEEecCC---CCchHHHHHHHHhC
Confidence 54 4589999999999875 23344579887544
No 156
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.55 E-value=5.5e-14 Score=132.51 Aligned_cols=112 Identities=29% Similarity=0.414 Sum_probs=92.7
Q ss_pred ceeeeccccceeEEEEEEEEeecCCCCC-CCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecC--CCCcE
Q 045058 259 TASTYDLVERMYFLYVRVVKARELPAMD-LTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDR--MQASV 332 (1005)
Q Consensus 259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~--~~~~~ 332 (1005)
++..|+. ..+.|.|+|++|++|+..+ ..+.+||||++++.+ ...+|++++++.||+|||.|.|.+.. +....
T Consensus 5 ~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~ 82 (123)
T cd08390 5 FSVQYDL--EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRT 82 (123)
T ss_pred EEEEECC--CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccE
Confidence 4445544 4588999999999999988 688999999999853 45789999999999999999998753 33468
Q ss_pred EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeec
Q 045058 333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLED 377 (1005)
Q Consensus 333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 377 (1005)
|.|+|||++ .+++++||++.++|.++... .....|++|+.
T Consensus 83 l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~-----~~~~~w~~L~~ 123 (123)
T cd08390 83 LRLSVYDVDRFSRHCIIGHVLFPLKDLDLV-----KGGVVWRDLEP 123 (123)
T ss_pred EEEEEEECCcCCCCcEEEEEEEeccceecC-----CCceEEEeCCC
Confidence 999999998 67899999999999999864 34578999863
No 157
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.55 E-value=3.2e-14 Score=132.40 Aligned_cols=92 Identities=26% Similarity=0.312 Sum_probs=81.1
Q ss_pred ceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecC-CCCcEEEEEEEeCC-CCCC
Q 045058 268 RMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDR-MQASVLEVVIKDKD-LVKD 345 (1005)
Q Consensus 268 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~-~~~~~l~v~V~d~~-~~~d 345 (1005)
.++.|+|+|++|++|+. +..+.+||||+|+++++.+||++++++.||+|||+|.|.... .....|.|+|||++ .++|
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 45899999999999984 667889999999999999999999999999999999997433 34578999999999 7799
Q ss_pred ceeEEEEEEceecCC
Q 045058 346 DFVGIVRFDINEVPL 360 (1005)
Q Consensus 346 ~~lG~~~i~l~~l~~ 360 (1005)
++||++.++|.....
T Consensus 105 d~IG~~~i~l~~~~~ 119 (127)
T cd04032 105 DLLGTCSVVPEAGVH 119 (127)
T ss_pred CeeEEEEEEecCCce
Confidence 999999999996653
No 158
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.54 E-value=3.8e-14 Score=135.00 Aligned_cols=98 Identities=29% Similarity=0.372 Sum_probs=82.9
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-------CeEeeccccCCCCCCceeeEEEEEeccCc-cccceEEEEEE
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-------GQRFRTTIKENDLNPVWNESFYFNISDAS-KLHYLTLEAYI 74 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-------~~~~~T~v~~~t~nP~Wne~f~f~v~~~~-~~~~~~l~v~V 74 (1005)
...|+|+|++|++|+.++..|.+||||+|++. ..++||+++++++||+|||+|.|.+.... ......|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 36899999999999999888999999999985 34789999999999999999999986532 12346899999
Q ss_pred EeCCCCCCCCcccEEEEEeCCcccCCC
Q 045058 75 YNNIGDTNSRSFLGKVCLTGNSFVPLS 101 (1005)
Q Consensus 75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~ 101 (1005)
||++. .++|++||++.++|.++...+
T Consensus 95 ~d~d~-~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 95 KDYDL-LGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred EecCC-CCCCcEeEEEEEeHHHCCccc
Confidence 99964 457999999999999986443
No 159
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=3.1e-14 Score=130.89 Aligned_cols=101 Identities=23% Similarity=0.428 Sum_probs=84.3
Q ss_pred CCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccC
Q 045058 21 GKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVP 99 (1005)
Q Consensus 21 ~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~ 99 (1005)
.+|.+||||+|+++++ .++|++++++.||+|||+|.|.+.+.. ...|.|.|||++ .. +|++||++.++|+++..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~-~~-~d~~iG~~~v~L~~l~~ 83 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDR-DR-HDPVLGSVSISLNDLID 83 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECC-CC-CCCeEEEEEecHHHHHh
Confidence 4688999999999885 579999999999999999999986542 357999999985 44 89999999999999865
Q ss_pred CCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 100 LSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 100 ~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
.+.....||+|.+ ..+|+|++++.|.+
T Consensus 84 ~~~~~~~w~~L~~-----~~~G~i~~~~~~~p 110 (111)
T cd04052 84 ATSVGQQWFPLSG-----NGQGRIRISALWKP 110 (111)
T ss_pred hhhccceeEECCC-----CCCCEEEEEEEEec
Confidence 5444468999985 23699999998865
No 160
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.53 E-value=4.8e-14 Score=135.19 Aligned_cols=107 Identities=27% Similarity=0.337 Sum_probs=87.5
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|.|+|++|++|+.++..|.+||||+|++. + .+++|+++++++||+|||+|.|.+... .+....|.|+|||+
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~l~~~~l~~~v~d~ 92 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE-QIQKVHLIVTVLDY 92 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHH-HhCCCEEEEEEEeC
Confidence 47899999999999999999999999999984 2 357899999999999999999998543 24446899999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
+. .++|++||++.+++... +.....|+++....
T Consensus 93 ~~-~~~~~~iG~~~i~~~~~---~~~~~~W~~~~~~~ 125 (136)
T cd08402 93 DR-IGKNDPIGKVVLGCNAT---GAELRHWSDMLASP 125 (136)
T ss_pred CC-CCCCceeEEEEECCccC---ChHHHHHHHHHhCC
Confidence 64 56899999999998753 33345788876543
No 161
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.53 E-value=4.8e-14 Score=134.42 Aligned_cols=102 Identities=29% Similarity=0.474 Sum_probs=89.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC----CeeeeeeeecCCCCCeeeeEEEEeecCC---------------CCcE
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIG----NYKGITKHYEKNQNPQWHQVFAFSRDRM---------------QASV 332 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~----~~~~kT~~~~~~~nP~wne~f~f~~~~~---------------~~~~ 332 (1005)
|.|+|++|++|+.+ ..+.+||||+++++ +..++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 56999999999988 78899999999998 6778999999999999999999997654 4578
Q ss_pred EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCC
Q 045058 333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379 (1005)
Q Consensus 333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 379 (1005)
|.|+|||++ .+++++||++.+++.++... .....|++|....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~-----~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQA-----GSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCC-----CcccceEecCCcC
Confidence 999999999 66899999999999998753 3468899998875
No 162
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.53 E-value=1.7e-13 Score=129.58 Aligned_cols=115 Identities=23% Similarity=0.345 Sum_probs=94.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------eeeeeeeecCCCCCee-eeEEEEeecCCCCcEEEEEE
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN-------------YKGITKHYEKNQNPQW-HQVFAFSRDRMQASVLEVVI 337 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------------~~~kT~~~~~~~nP~w-ne~f~f~~~~~~~~~l~v~V 337 (1005)
+.|++++|+||+ ++..|.+||||++++.+ +.++|+++++++||+| ||.|.|.+.. ++.|.|+|
T Consensus 3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~V 79 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIEV 79 (137)
T ss_pred EEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEEE
Confidence 569999999998 67789999999999953 3689999999999999 9999998853 46899999
Q ss_pred EeCCC-CC---CceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc-cceEEEEEE
Q 045058 338 KDKDL-VK---DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK-IKGELMLAV 391 (1005)
Q Consensus 338 ~d~~~-~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~ 391 (1005)
||++. ++ +++||++.+++.++..... ......|++|......+ ..|+|.+.+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~--~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHA--IGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhccccc--CCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99863 32 7999999999999976522 23467899998765443 789998865
No 163
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.53 E-value=1.9e-14 Score=137.34 Aligned_cols=108 Identities=22% Similarity=0.373 Sum_probs=86.0
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-C----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-G----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-~----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|.|+|++|+||..+|..|.+||||+|++. + .+++|+++++|+||+|||+|.|.+...+ +....|.|+|||+
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~-l~~~~l~~~V~d~ 91 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE-LENVSLVFTVYGH 91 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH-hCCCEEEEEEEeC
Confidence 47899999999999999999999999999972 2 2579999999999999999999985432 4445799999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
+ ..+++++||++.|.... ..+.....|+.|....
T Consensus 92 d-~~~~~~~iG~~~l~~~~--~~~~~~~~W~~l~~~~ 125 (135)
T cd08410 92 N-VKSSNDFIGRIVIGQYS--SGPSETNHWRRMLNSQ 125 (135)
T ss_pred C-CCCCCcEEEEEEEcCcc--CCchHHHHHHHHHhCC
Confidence 5 45689999999876433 3333345798876553
No 164
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.53 E-value=9.3e-15 Score=152.90 Aligned_cols=105 Identities=27% Similarity=0.479 Sum_probs=94.5
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEE-----CCeEEeeecccCCCCCcccccEEEEEeeCC-CCCeEEEEEEeccCC
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI-----GNQVLKTKICQARTLSAVWNEDLLFVAAEP-FEDHLVLTVEDRVGP 508 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l-----g~~~~kT~~~~~~t~~P~w~e~f~f~v~~~-~~~~l~i~V~d~d~~ 508 (1005)
.|.|.|.+|+||.++|.+|.+||||++.+ +..+++|++++ .++||+|||+|.|.+... .+..|.|+|||||..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEecccccccceeEEEEeccccc
Confidence 79999999999999999999999999999 34678999997 999999999999998655 667999999999999
Q ss_pred CCCceeEEEEEcccccccccccccccceeEEccCCCc
Q 045058 509 GKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPVA 545 (1005)
Q Consensus 509 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~ 545 (1005)
++++++|..++.+++|.... .+.||.|.....
T Consensus 260 sRNDFMGslSFgisEl~K~p-----~~GWyKlLsqeE 291 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQKAP-----VDGWYKLLSQEE 291 (683)
T ss_pred ccccccceecccHHHHhhcc-----hhhHHHHhhhhc
Confidence 99999999999999998763 788998877653
No 165
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.53 E-value=1.5e-13 Score=123.70 Aligned_cols=85 Identities=21% Similarity=0.384 Sum_probs=68.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCC-c
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQ-L 671 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~-~ 671 (1005)
|.|+|++|+||+ +.+||||++.+++ ..+||+++++|+||+|||+|+|++.. ...|.+.|||++. .
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 679999999996 3589999999853 35899999999999999999999864 6799999999831 0
Q ss_pred -CCCCCCCCCcccEEEEEEccc
Q 045058 672 -GEKSNGNKDLKIGKVRIRIST 692 (1005)
Q Consensus 672 -~~~~~~~~d~~lG~~~i~l~~ 692 (1005)
..+ ...+|+.+|++.|.|..
T Consensus 72 ~~~d-~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 VKLD-GEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccc-ccCcccEEEEEEEEECH
Confidence 000 22389999998888754
No 166
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.52 E-value=8.8e-14 Score=129.05 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=83.6
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE--CC---EEEEeeeccCCC-CceeccEEEEEEeCC--CceEEEE
Q 045058 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY--GH---KWVRTRTLVDNL-SPKYNEQYTWEVFDP--ATVLTVG 664 (1005)
Q Consensus 593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~--g~---~~~~T~~~~~t~-nP~wne~f~~~v~~~--~~~l~i~ 664 (1005)
|..|+|+|+|++|+||++++ + .+.+||||++.+ ++ ++.||+++++|+ ||+|||+|.|+|..+ ...|.|+
T Consensus 11 p~~~rLtV~VikarnL~~~~--~-~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~ 87 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSS--T-PLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIK 87 (135)
T ss_pred CcCCeEEEEEEEccCCCccc--C-CCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEE
Confidence 66799999999999999864 2 455699999987 22 246899999995 699999999999753 4578899
Q ss_pred EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058 665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV 707 (1005)
Q Consensus 665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 707 (1005)
|||++..+ ++++||++.++.+... +...++|..+..
T Consensus 88 v~d~~~~~------~n~~IG~v~lG~~~~~-~~~~~hW~~m~~ 123 (135)
T cd08692 88 LYSRSSVR------RKHFLGQVWISSDSSS-SEAVEQWKDTIA 123 (135)
T ss_pred EEeCCCCc------CCceEEEEEECCccCC-chhhhhHHHHHh
Confidence 99998665 8999999999997643 223367877753
No 167
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.52 E-value=8.9e-14 Score=132.50 Aligned_cols=102 Identities=26% Similarity=0.358 Sum_probs=88.3
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeCC--CceEEEEEEeC
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDP--ATVLTVGVFDN 668 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~~--~~~l~i~v~d~ 668 (1005)
|.|+|+|++|++|+.. +..+.+||||++.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~---~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPM---DPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCc---CCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 7899999999999964 3467899999999953 568999999999999999999998753 56899999999
Q ss_pred CCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeee
Q 045058 669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLV 707 (1005)
Q Consensus 669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 707 (1005)
+..+ ++++||.+.++|+++... ....||+|..
T Consensus 90 ~~~~------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 90 DRTT------RNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCC------CcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 8665 789999999999999865 5578999973
No 168
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.52 E-value=2.1e-13 Score=128.15 Aligned_cols=118 Identities=22% Similarity=0.280 Sum_probs=94.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCcee
Q 045058 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIGNY-KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDFV 348 (1005)
Q Consensus 271 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~l 348 (1005)
.|.|+|.+|+ |...+..+.+||||+++++++ .++|++++++.||.|||.|.|.+.+ ...|.|+|||++ .+.+++|
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~i 79 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVLL 79 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcEE
Confidence 5889999998 555555788999999999987 7899999999999999999999864 468999999999 6789999
Q ss_pred EEEEEEceecCCCCCCCCCCCCeEEEeecCCC--CccceEEEEEE
Q 045058 349 GIVRFDINEVPLRVPPDSPLAPEWYRLEDKKG--EKIKGELMLAV 391 (1005)
Q Consensus 349 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~G~i~l~~ 391 (1005)
|++.++|.++.............|++|..+.. ....|+|.+.+
T Consensus 80 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 80 GEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 99999999998653222222345899986652 23679988764
No 169
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.52 E-value=6.3e-14 Score=133.54 Aligned_cols=107 Identities=21% Similarity=0.301 Sum_probs=87.7
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
.++|.|+|++|+||..++..|.+||||+|++. + .++||++++++.||+|||+|.|.+... .+....|.|.|||
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~-~l~~~~L~~~V~~ 92 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF-QLSEVTLMFSVYN 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH-HhCccEEEEEEEE
Confidence 47899999999999999999999999999983 2 257999999999999999999998653 3666799999999
Q ss_pred CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 113 (1005)
.+. .+++++||++.+++..... +....|+.+...
T Consensus 93 ~~~-~~~~~~iG~v~l~~~~~~~--~~~~hW~~~l~~ 126 (138)
T cd08408 93 KRK-MKRKEMIGWFSLGLNSSGE--EEEEHWNEMKES 126 (138)
T ss_pred CCC-CCCCcEEEEEEECCcCCCc--hHHHHHHHHHhC
Confidence 965 5689999999999765332 223468777543
No 170
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=6.6e-14 Score=131.39 Aligned_cols=90 Identities=27% Similarity=0.421 Sum_probs=78.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE--EEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCCcCC
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW--VRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGE 673 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~--~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~ 673 (1005)
.|+|.|++|+||++++ ..|.+||||++.+++.. .||+++++++||+|||.|.|++..+ ...|.|+|||++.++
T Consensus 1 ~lrV~Vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPKD---PNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCCC---CCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC-
Confidence 3789999999999754 57899999999998875 4788899999999999999998765 678999999999776
Q ss_pred CCCCCCCcccEEEEEEcccccC
Q 045058 674 KSNGNKDLKIGKVRIRISTLET 695 (1005)
Q Consensus 674 ~~~~~~d~~lG~~~i~l~~l~~ 695 (1005)
+|++||++.|+|.+...
T Consensus 77 -----~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 -----SDDLIGETVIDLEDRFF 93 (124)
T ss_pred -----CCceeEEEEEeeccccc
Confidence 89999999999998664
No 171
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.52 E-value=7e-15 Score=153.84 Aligned_cols=106 Identities=25% Similarity=0.387 Sum_probs=91.9
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
...|+|+|.+|+||.++|.+|.+||||.+.+- ..+++|++++.++||+|||+|.|.+...+. ...|.|+|||+
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWDW 256 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWDW 256 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEecc
Confidence 46799999999999999999999999999982 237899999999999999999999865443 46899999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 113 (1005)
|+. ++++|+|...+.+++|...... .||.|...
T Consensus 257 DrT-sRNDFMGslSFgisEl~K~p~~--GWyKlLsq 289 (683)
T KOG0696|consen 257 DRT-SRNDFMGSLSFGISELQKAPVD--GWYKLLSQ 289 (683)
T ss_pred ccc-ccccccceecccHHHHhhcchh--hHHHHhhh
Confidence 765 5999999999999999876654 59998754
No 172
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=3e-14 Score=136.59 Aligned_cols=106 Identities=27% Similarity=0.387 Sum_probs=86.6
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|.|+|++|+||..++..|.+||||+|++. + .+++|++++++.||+|||+|.|.+... .+....|.|+|||+
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~-~~~~~~l~~~v~d~ 92 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLE-RLRETTLIITVMDK 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHH-HhCCCEEEEEEEEC
Confidence 47899999999999999989999999999982 2 357999999999999999999997532 23346899999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 113 (1005)
+. .+++++||++.+++.+. +.....|++|...
T Consensus 93 ~~-~~~~~~lG~~~i~~~~~---~~~~~~w~~~~~~ 124 (136)
T cd08405 93 DR-LSRNDLIGKIYLGWKSG---GLELKHWKDMLSK 124 (136)
T ss_pred CC-CCCCcEeEEEEECCccC---CchHHHHHHHHhC
Confidence 64 56899999999998875 3334568777544
No 173
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.51 E-value=7.8e-14 Score=132.91 Aligned_cols=107 Identities=29% Similarity=0.459 Sum_probs=90.7
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|.|+|++|+||+..+..+.+||||.|.+.+ .+++|++++++.||.|||+|.|.+...+ ....|.|.|||+
T Consensus 12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~ 89 (131)
T cd04026 12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDW 89 (131)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEEC
Confidence 478999999999999988888999999999963 5799999999999999999999986543 235899999998
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
+. .+++++||++.+++.++... ....||+|.+..
T Consensus 90 ~~-~~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~ 123 (131)
T cd04026 90 DR-TTRNDFMGSLSFGVSELIKM--PVDGWYKLLNQE 123 (131)
T ss_pred CC-CCCcceeEEEEEeHHHhCcC--ccCceEECcCcc
Confidence 54 45899999999999998754 335799997653
No 174
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.51 E-value=2.2e-13 Score=129.49 Aligned_cols=117 Identities=25% Similarity=0.408 Sum_probs=95.7
Q ss_pred cEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeEeeccccCCCC-CCceeeEEEEEeccCccccceEEEEEE
Q 045058 4 LKLGVQVVGAHNLLPKD--GKGSSSAFVELYFD------GQRFRTTIKENDL-NPVWNESFYFNISDASKLHYLTLEAYI 74 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d--~~g~~dpyv~v~~~------~~~~~T~v~~~t~-nP~Wne~f~f~v~~~~~~~~~~l~v~V 74 (1005)
..|+|+|++|+||+..+ ..+.+||||++++. ..+.+|+++.++. ||+|||+|.|.+..++ ...|.|.|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 47999999999999888 47889999999993 4578999877765 9999999999987544 25799999
Q ss_pred EeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 75 YNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
||++. . ++++||++.+++.++... ..|++|....+.....|.|.+++.+
T Consensus 79 ~d~~~-~-~~~~iG~~~~~l~~l~~g----~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDS-G-DDDFLGQACLPLDSLRQG----YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCC-C-CCcEeEEEEEEhHHhcCc----eEEEEecCCCCCCCcceeEEEEEEE
Confidence 99854 4 899999999999998432 3589998776554567999998865
No 175
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.51 E-value=9.5e-14 Score=130.33 Aligned_cols=89 Identities=28% Similarity=0.478 Sum_probs=80.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCee--eeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCcee
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYK--GITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDFV 348 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~--~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~l 348 (1005)
|+|+|++|++|+..+..|.+||||+++++++. .+|++++++.||.|||+|.|.+.......|.|+|||++ .++|++|
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~i 81 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDLI 81 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCcee
Confidence 78999999999999999999999999999865 57888899999999999999987666679999999999 7789999
Q ss_pred EEEEEEceecCC
Q 045058 349 GIVRFDINEVPL 360 (1005)
Q Consensus 349 G~~~i~l~~l~~ 360 (1005)
|++.+++.+...
T Consensus 82 G~~~i~l~~~~~ 93 (124)
T cd04037 82 GETVIDLEDRFF 93 (124)
T ss_pred EEEEEeeccccc
Confidence 999999997764
No 176
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.51 E-value=4.7e-14 Score=134.80 Aligned_cols=111 Identities=25% Similarity=0.415 Sum_probs=90.1
Q ss_pred eeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEeecC--CCCcE
Q 045058 260 ASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSRDR--MQASV 332 (1005)
Q Consensus 260 ~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~~~--~~~~~ 332 (1005)
+..|+ ...+.|.|+|++|++|+..+..|.+||||++++.+ ..++|++++++.||.|||+|.|.+.. +....
T Consensus 5 ~l~y~--~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~ 82 (133)
T cd08384 5 SLMYN--TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKT 82 (133)
T ss_pred EEEEc--CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCE
Confidence 34444 34589999999999999999889999999999964 35689999999999999999999753 34568
Q ss_pred EEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCC
Q 045058 333 LEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379 (1005)
Q Consensus 333 l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 379 (1005)
|.|+|||++ .+++++||++.+++... + ....+|+++...+
T Consensus 83 l~~~V~d~d~~~~~~~lG~~~i~l~~~--~-----~~~~~W~~~l~~~ 123 (133)
T cd08384 83 LEITVWDKDIGKSNDYIGGLQLGINAK--G-----ERLRHWLDCLKNP 123 (133)
T ss_pred EEEEEEeCCCCCCccEEEEEEEecCCC--C-----chHHHHHHHHhCC
Confidence 999999999 67899999999999752 1 2346787775543
No 177
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.50 E-value=1e-13 Score=132.05 Aligned_cols=95 Identities=29% Similarity=0.407 Sum_probs=83.1
Q ss_pred cceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eeeeeeeecCCCCCeeeeEEEEeecCC----CCcEEEE
Q 045058 267 ERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-------YKGITKHYEKNQNPQWHQVFAFSRDRM----QASVLEV 335 (1005)
Q Consensus 267 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------~~~kT~~~~~~~nP~wne~f~f~~~~~----~~~~l~v 335 (1005)
.....|.|+|++|++|+..+..+.+||||+|++.+ ..++|++++++.||+|||+|.|.+... ....|.|
T Consensus 13 ~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 13 ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 34578999999999999998889999999999963 357999999999999999999997642 3568999
Q ss_pred EEEeCC-CCCCceeEEEEEEceecCCC
Q 045058 336 VIKDKD-LVKDDFVGIVRFDINEVPLR 361 (1005)
Q Consensus 336 ~V~d~~-~~~d~~lG~~~i~l~~l~~~ 361 (1005)
+|||++ .+++++||++.++|.++...
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 999999 67799999999999999743
No 178
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.50 E-value=5.9e-14 Score=134.15 Aligned_cols=107 Identities=20% Similarity=0.311 Sum_probs=85.8
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
..+.|+|+|++|++|+.++..|.+||||+|++. + .+++|+++++++||+|||+|.|.+... .+....|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~-~~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE-NVDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHH-HhCCCEEEEEEEE
Confidence 357899999999999999999999999999983 2 267999999999999999999998542 2444579999999
Q ss_pred CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 113 (1005)
++. .+++++||++.+++... +.....|+++...
T Consensus 91 ~~~-~~~~~~IG~~~l~~~~~---~~~~~~w~~~~~~ 123 (134)
T cd08403 91 YDR-VGHNELIGVCRVGPNAD---GQGREHWNEMLAN 123 (134)
T ss_pred CCC-CCCCceeEEEEECCCCC---CchHHHHHHHHHC
Confidence 954 56899999999997632 2333468777544
No 179
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.50 E-value=2.3e-13 Score=130.50 Aligned_cols=104 Identities=28% Similarity=0.367 Sum_probs=84.9
Q ss_pred eEEEEEEEEEeeeCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEec
Q 045058 433 LWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIG--N---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDR 505 (1005)
Q Consensus 433 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~ 505 (1005)
.+.|.|.|++|++|+.++..+.+||||++.++ + ..++|++++ ++.||.|||.|.|.+... ....|.|+|||+
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~ 92 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-RTLNPYYNESFSFEVPFEQIQKVHLIVTVLDY 92 (136)
T ss_pred CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeecccee-CCCCCcccceEEEECCHHHhCCCEEEEEEEeC
Confidence 34799999999999999999999999999994 2 356788886 999999999999998643 234799999999
Q ss_pred cCCCCCceeEEEEEcccccccccccccccceeEEccCC
Q 045058 506 VGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543 (1005)
Q Consensus 506 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 543 (1005)
+.++++++||++.|++..... ...+|+.+...
T Consensus 93 ~~~~~~~~iG~~~i~~~~~~~------~~~~W~~~~~~ 124 (136)
T cd08402 93 DRIGKNDPIGKVVLGCNATGA------ELRHWSDMLAS 124 (136)
T ss_pred CCCCCCceeEEEEECCccCCh------HHHHHHHHHhC
Confidence 999999999999999976421 24566665444
No 180
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.50 E-value=1.1e-13 Score=132.67 Aligned_cols=103 Identities=25% Similarity=0.335 Sum_probs=85.9
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEEC--C---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIG--N---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG 507 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~ 507 (1005)
.|.|+|++|+||+..+..+.+||||++.+. + ...+|++++ ++.||.|||.|.|.+... ....|.|+|||++.
T Consensus 16 ~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k-~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~ 94 (136)
T cd08404 16 RLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKK-CTLNPVFNESFVFDIPSEELEDISVEFLVLDSDR 94 (136)
T ss_pred eEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCcccc-CCCCCccCceEEEECCHHHhCCCEEEEEEEECCC
Confidence 799999999999999999999999999983 2 256788886 999999999999998643 34578899999999
Q ss_pred CCCCceeEEEEEcccccccccccccccceeEEccCCC
Q 045058 508 PGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPV 544 (1005)
Q Consensus 508 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 544 (1005)
.+++++||++.+++.. ... ...+|+.|...+
T Consensus 95 ~~~~~~iG~~~~~~~~-~~~-----~~~~w~~l~~~~ 125 (136)
T cd08404 95 VTKNEVIGRLVLGPKA-SGS-----GGHHWKEVCNPP 125 (136)
T ss_pred CCCCccEEEEEECCcC-CCc-----hHHHHHHHHhCC
Confidence 9999999999999987 221 357788876543
No 181
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.49 E-value=1.7e-13 Score=128.94 Aligned_cols=98 Identities=21% Similarity=0.320 Sum_probs=82.3
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFD-----GQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.|+|+|++|++|+..+..+.+||||++++. ..+.+|++++++.||+|||+|.|............|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 47899999999999998888999999999983 2478999999999999999999974333334446899999998
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSD 102 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~ 102 (1005)
+. . ++++||++.++++++.....
T Consensus 94 ~~-~-~~~~iG~~~i~l~~l~~~~~ 116 (123)
T cd04035 94 DR-F-GNDFLGETRIPLKKLKPNQT 116 (123)
T ss_pred CC-c-CCeeEEEEEEEcccCCCCcc
Confidence 54 4 89999999999999876554
No 182
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.49 E-value=1.9e-13 Score=130.39 Aligned_cols=105 Identities=23% Similarity=0.340 Sum_probs=84.2
Q ss_pred EEEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEecc
Q 045058 434 WYVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GN---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRV 506 (1005)
Q Consensus 434 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d 506 (1005)
+.|.|+|++|+||+..+..+.+||||++.+ +. ...+|++++ ++.||.|||.|.|.+... .+..|.|+|||++
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMR-GTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcccc-CCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 479999999999999998899999999998 32 357888886 899999999999998543 3447999999999
Q ss_pred CCCCCceeEEEEEcccccccccccccccceeEEccCCC
Q 045058 507 GPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKPV 544 (1005)
Q Consensus 507 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 544 (1005)
..+++++||++.|+....... ...+|+.|....
T Consensus 93 ~~~~~~~iG~~~l~~~~~~~~-----~~~~W~~l~~~~ 125 (135)
T cd08410 93 VKSSNDFIGRIVIGQYSSGPS-----ETNHWRRMLNSQ 125 (135)
T ss_pred CCCCCcEEEEEEEcCccCCch-----HHHHHHHHHhCC
Confidence 999999999999876443321 135666665543
No 183
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.49 E-value=5e-14 Score=134.54 Aligned_cols=106 Identities=21% Similarity=0.284 Sum_probs=85.9
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.++|.|+|++|+||...+ .+.+||||+|++.. .+++|++++++.||+|||+|.|.+... .+....|.|+|||+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~-~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR-QLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH-HhCccEEEEEEEeC
Confidence 478999999999999988 78899999999743 367999999999999999999998643 35667899999999
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK 112 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 112 (1005)
+. .+++++||++.|+......+ +..+.|..+..
T Consensus 92 ~~-~~~~~~lG~v~ig~~~~~~~-~~~~hW~~~~~ 124 (137)
T cd08409 92 GG-VRKSKLLGRVVLGPFMYARG-KELEHWNDMLS 124 (137)
T ss_pred CC-CCCcceEEEEEECCcccCCC-hHHHHHHHHHh
Confidence 64 56899999999996554333 33456877654
No 184
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.49 E-value=3e-13 Score=129.64 Aligned_cols=90 Identities=29% Similarity=0.433 Sum_probs=78.6
Q ss_pred EEEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CC---eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEecc
Q 045058 434 WYVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GN---QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRV 506 (1005)
Q Consensus 434 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~---~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d 506 (1005)
+.|.|+|++|+||+..+..+.+||||++.+ ++ ..++|++++ ++.||.|||.|.|.+... .+..|.|+|||++
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 379999999999999888899999999998 32 357899986 999999999999997532 3568999999999
Q ss_pred CCCCCceeEEEEEccccc
Q 045058 507 GPGKDEIIGRVIIPLSAI 524 (1005)
Q Consensus 507 ~~~~d~~iG~~~i~l~~l 524 (1005)
..+++++||++.+++.+.
T Consensus 94 ~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 94 RLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCcEeEEEEECCccC
Confidence 999999999999999875
No 185
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.49 E-value=3.4e-13 Score=128.82 Aligned_cols=88 Identities=25% Similarity=0.324 Sum_probs=76.0
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccC
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-----QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVG 507 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~ 507 (1005)
.|.|.|++|+||+..+ .+.+||||++.+.. .+++|++++ ++.||.|||.|.|.+... ....|.|.|||++.
T Consensus 16 ~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~ 93 (137)
T cd08409 16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG 93 (137)
T ss_pred eEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence 7999999999999988 77899999999832 366888886 999999999999998643 44689999999999
Q ss_pred CCCCceeEEEEEccccc
Q 045058 508 PGKDEIIGRVIIPLSAI 524 (1005)
Q Consensus 508 ~~~d~~iG~~~i~l~~l 524 (1005)
.+++++||++.|+....
T Consensus 94 ~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 94 VRKSKLLGRVVLGPFMY 110 (137)
T ss_pred CCCcceEEEEEECCccc
Confidence 99999999999986543
No 186
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.48 E-value=9.9e-14 Score=133.08 Aligned_cols=108 Identities=27% Similarity=0.413 Sum_probs=90.2
Q ss_pred CCcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 2 RNLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 2 ~~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
..+.|.|+|++|+||+..+..+.+||||++++.+. +++|+++.++.||.|||+|.|.+.... +....|.|+|||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~-l~~~~l~~~v~d 90 (134)
T cd00276 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ-LEEVSLVITVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH-hCCcEEEEEEEe
Confidence 35789999999999999988889999999998542 679999999999999999999986532 334689999999
Q ss_pred CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
++. .+++++||++.+++.+ .+...+.|++|....
T Consensus 91 ~~~-~~~~~~lG~~~i~l~~---~~~~~~~W~~l~~~~ 124 (134)
T cd00276 91 KDS-VGRNEVIGQVVLGPDS---GGEELEHWNEMLASP 124 (134)
T ss_pred cCC-CCCCceeEEEEECCCC---CCcHHHHHHHHHhCC
Confidence 864 3589999999999998 344456799998664
No 187
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.6e-14 Score=147.33 Aligned_cols=223 Identities=18% Similarity=0.263 Sum_probs=167.8
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEe--ec-CCC
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFS--RD-RMQ 329 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~--~~-~~~ 329 (1005)
.+...|+.. ...+..++..|++|.+++.++..|||++..++. .+.+|++..++.||.|+|+-... .. +..
T Consensus 83 ~~~~~y~~~--~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~ 160 (362)
T KOG1013|consen 83 EFELLYDSE--SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTH 160 (362)
T ss_pred hhhhhhhhh--hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhh
Confidence 444555543 467899999999999999999999999999986 34678889999999999876654 22 223
Q ss_pred CcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC------ccceEEEEEEEEeccCCcccc
Q 045058 330 ASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE------KIKGELMLAVWIGTQADEAFS 402 (1005)
Q Consensus 330 ~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~------~~~G~i~l~~~~~~~~d~~~~ 402 (1005)
...+.+.|.|.+ +..++++|+..+++..+...+- .....|+.-..+.+. +.+|.|.+++.|..
T Consensus 161 ~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~---k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s------- 230 (362)
T KOG1013|consen 161 LKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQR---KSFNICLEKSLPSERADRDEDEERGAILISLAYSS------- 230 (362)
T ss_pred hhhhheeeccCcccccccCcccchhhhhccChhhc---chhhhhhhccCCcccccccchhhccceeeeeccCc-------
Confidence 456778888888 7889999999999888865432 223334433332111 24566666664322
Q ss_pred cccCCCCCCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCC
Q 045058 403 DAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-----QVLKTKICQART 477 (1005)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t 477 (1005)
...-+.|.+++|.+|..+|.++.+||||+.++.. .+.+|++.+ ++
T Consensus 231 -----------------------------~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K-~t 280 (362)
T KOG1013|consen 231 -----------------------------TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKK-KT 280 (362)
T ss_pred -----------------------------CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchh-cc
Confidence 2225789999999999999999999999999932 466788876 99
Q ss_pred CCcccccEEEEEeeCC--CCCeEEEEEEeccCCCCCceeEEEEEccc
Q 045058 478 LSAVWNEDLLFVAAEP--FEDHLVLTVEDRVGPGKDEIIGRVIIPLS 522 (1005)
Q Consensus 478 ~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~ 522 (1005)
.+|.|++.|.|.+... ....+.|.|||++..+..+++|-+...+.
T Consensus 281 ~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 281 LNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred CCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 9999999999988544 34579999999998888999998776654
No 188
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.48 E-value=2.5e-13 Score=124.88 Aligned_cols=101 Identities=22% Similarity=0.399 Sum_probs=85.8
Q ss_pred CCCCCCcEEEEEECCe-eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCC
Q 045058 287 LTGSIDPFVEVKIGNY-KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPD 365 (1005)
Q Consensus 287 ~~g~~dPyv~v~~~~~-~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~ 365 (1005)
.+|.+||||+++++++ ..+|++++++.||.|||.|.|.+.+.....|.|.|+|++..++++||++.++|.++...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~---- 84 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA---- 84 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh----
Confidence 5788999999999885 47999999999999999999999877678899999999933899999999999998643
Q ss_pred CCCCCeEEEeecCCCCccceEEEEEEEEec
Q 045058 366 SPLAPEWYRLEDKKGEKIKGELMLAVWIGT 395 (1005)
Q Consensus 366 ~~~~~~w~~L~~~~~~~~~G~i~l~~~~~~ 395 (1005)
......|++|.+. ..|+|++++.|.|
T Consensus 85 ~~~~~~w~~L~~~----~~G~i~~~~~~~p 110 (111)
T cd04052 85 TSVGQQWFPLSGN----GQGRIRISALWKP 110 (111)
T ss_pred hhccceeEECCCC----CCCEEEEEEEEec
Confidence 1346799999862 2499999998875
No 189
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.48 E-value=8.8e-14 Score=176.72 Aligned_cols=118 Identities=24% Similarity=0.424 Sum_probs=101.6
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCC--ceEEEEEEeCC
Q 045058 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPA--TVLTVGVFDNS 669 (1005)
Q Consensus 593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~--~~l~i~v~d~~ 669 (1005)
.-.|.|.|+|++|+||. . ..|.+||||++.+|+. ..||++++++.||+|||.|+|.+.+|. ..|+|+|||+|
T Consensus 1977 ~~~G~L~V~V~~a~nl~-~----~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK-Q----SMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKN 2051 (2102)
T ss_pred hCCcceEEEEeeccccc-c----ccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecC
Confidence 34799999999999997 1 2688999999999965 789999999999999999999998865 78999999999
Q ss_pred CcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeE---EEEEEEEe
Q 045058 670 QLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGE---LHLAIRFS 726 (1005)
Q Consensus 670 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~---i~l~~~~~ 726 (1005)
.++ ++.||++.|+|.++..++.+..||+|... .++.|+ |+++++++
T Consensus 2052 ~f~-------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~----~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2052 TFG-------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE----SNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccC-------CCCCceEEEEHHHHhcCceeeeeeecCcc----cccCCCcceEEEEEEec
Confidence 775 45999999999999999999999999721 234577 88888764
No 190
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.48 E-value=1.9e-13 Score=122.97 Aligned_cols=81 Identities=22% Similarity=0.382 Sum_probs=68.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC--
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI-- 78 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~-- 78 (1005)
|.|+|++|+||+ |.+||||++.++. .++||+++++|+||+|||+|.|.+.. ...|.+.|||+.
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-----CCEEEEEEEEcccc
Confidence 689999999996 4699999999963 36999999999999999999999964 248999999973
Q ss_pred ----CCCCCCcccEEEEEeCCc
Q 045058 79 ----GDTNSRSFLGKVCLTGNS 96 (1005)
Q Consensus 79 ----~~~~~d~~lG~~~i~l~~ 96 (1005)
+..+.|++||.+.+.|.-
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred cccccccCcccEEEEEEEEECH
Confidence 234689999998888644
No 191
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=2.8e-14 Score=145.54 Aligned_cols=222 Identities=21% Similarity=0.297 Sum_probs=157.9
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
+.++..++..|++|.+++.+|..|||+...+.- .+.+|++..+++||.|||+-.......+......+.+.|.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 467899999999999999999999999998742 368999999999999999988875444555666788888888
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCc-eeeeEecccCCCcceeeeEEEEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDS-VVLHYPLEKRGIFSHVRGELGLKVYITDDPSIKSSTPLPAAETFSTKDPSITH 156 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~-~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1005)
++ ...++++|+..+++..+.+.... ...|+.-.-+ . ..++.
T Consensus 172 ~~-~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp-----------------~---------~rad~----------- 213 (362)
T KOG1013|consen 172 DK-KTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLP-----------------S---------ERADR----------- 213 (362)
T ss_pred cc-cccccCcccchhhhhccChhhcchhhhhhhccCC-----------------c---------ccccc-----------
Confidence 54 45889999999887766543211 0011110000 0 00000
Q ss_pred CCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCcccccCCCCccccccccCCCCCCcceeecccCCCCCCCCcc
Q 045058 157 THAQPVANPVTGDTVESRHTFHHLPNPNHHQHHHQHHPSTTVVNRHVPKYEADEMKSEPQPPKLVHMYSAASSQSADYAL 236 (1005)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1005)
+ + -+++
T Consensus 214 ------------------------~----------------------------~--~E~r-------------------- 219 (362)
T KOG1013|consen 214 ------------------------D----------------------------E--DEER-------------------- 219 (362)
T ss_pred ------------------------c----------------------------c--hhhc--------------------
Confidence 0 0 0000
Q ss_pred cccCCCCCCCcccCceeeccccceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecC
Q 045058 237 KETSPYLGGGKVVGGRVIHADKTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEK 311 (1005)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~ 311 (1005)
| +..++..|. .....+.|++++|..|..+|.+|.+||||..++.. .+.||.+.++
T Consensus 220 --------------g----~i~isl~~~--s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~ 279 (362)
T KOG1013|consen 220 --------------G----AILISLAYS--STTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK 279 (362)
T ss_pred --------------c----ceeeeeccC--cCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc
Confidence 0 001111221 22256889999999999999999999999999875 3468999999
Q ss_pred CCCCeeeeEEEEeec--CCCCcEEEEEEEeCCCC-CCceeEEEEEEce
Q 045058 312 NQNPQWHQVFAFSRD--RMQASVLEVVIKDKDLV-KDDFVGIVRFDIN 356 (1005)
Q Consensus 312 ~~nP~wne~f~f~~~--~~~~~~l~v~V~d~~~~-~d~~lG~~~i~l~ 356 (1005)
+.||.||+.|.|.+. ++....+.|.|||++.+ ..+++|-+...+.
T Consensus 280 t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 280 TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 999999999999864 55667899999999954 7899988776654
No 192
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.47 E-value=9.3e-14 Score=133.25 Aligned_cols=106 Identities=25% Similarity=0.399 Sum_probs=89.2
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-----EEEeeeccCCCCceeccEEEEEEeCC---CceEEEE
Q 045058 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-----WVRTRTLVDNLSPKYNEQYTWEVFDP---ATVLTVG 664 (1005)
Q Consensus 593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-----~~~T~~~~~t~nP~wne~f~~~v~~~---~~~l~i~ 664 (1005)
+..+.|.|.|++|+||+..+ ..+.+||||++.+.+. ..+|+++.++.||.|||+|.|.+... ...|.|+
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~ 87 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSD---GKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVIT 87 (134)
T ss_pred CCCCEEEEEEEEeeCCCCcc---CCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEE
Confidence 34589999999999999653 4678999999998432 46999999999999999999998764 5789999
Q ss_pred EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecC
Q 045058 665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLH 709 (1005)
Q Consensus 665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 709 (1005)
|||.+..+ ++++||.+.|+|++ .+...++||+|....
T Consensus 88 v~d~~~~~------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~ 124 (134)
T cd00276 88 VVDKDSVG------RNEVIGQVVLGPDS--GGEELEHWNEMLASP 124 (134)
T ss_pred EEecCCCC------CCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence 99998655 88999999999999 555668999997544
No 193
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.47 E-value=2.7e-13 Score=126.91 Aligned_cols=100 Identities=27% Similarity=0.333 Sum_probs=82.7
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEECCe-------EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC--
Q 045058 9 QVVGAHNLLPKDGKGSSSAFVELYFDGQ-------RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG-- 79 (1005)
Q Consensus 9 ~v~~a~~L~~~d~~g~~dpyv~v~~~~~-------~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-- 79 (1005)
-.++|++|..++..|.+||||+|++.+. .++|+++++++||+|||+|.|.+.... ...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence 4588999999999999999999999664 489999999999999999999864322 3579999999965
Q ss_pred -CCCCCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058 80 -DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEK 112 (1005)
Q Consensus 80 -~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 112 (1005)
..+++++||++.+++.++...... ..|++|..
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~~~-~~~~~l~~ 114 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSPGQ-KLTLPLKG 114 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCCCc-EEEEEccC
Confidence 156899999999999999765433 46899843
No 194
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.47 E-value=5.9e-13 Score=127.26 Aligned_cols=104 Identities=23% Similarity=0.322 Sum_probs=83.7
Q ss_pred eEEEEEEEEEeeeCCCCCCCCCCCcEEEEEECC-----eEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEec
Q 045058 433 LWYVRVNVVEAQDLVPTEKNHFPDVYVKAQIGN-----QVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDR 505 (1005)
Q Consensus 433 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~ 505 (1005)
.+.|+|+|++|++|+.++..+.+||||++.++. ...+|++++ ++.||.|||.|.|.+... ....|.|+|||+
T Consensus 13 ~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~ 91 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKK-NTLNPTYNEALVFDVPPENVDNVSLIIAVVDY 91 (134)
T ss_pred CCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCccc-CCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 348999999999999999999999999999832 356888875 899999999999988543 334699999999
Q ss_pred cCCCCCceeEEEEEcccccccccccccccceeEEccCC
Q 045058 506 VGPGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLEKP 543 (1005)
Q Consensus 506 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 543 (1005)
+..+++++||++.|++..... ...+|+.+...
T Consensus 92 ~~~~~~~~IG~~~l~~~~~~~------~~~~w~~~~~~ 123 (134)
T cd08403 92 DRVGHNELIGVCRVGPNADGQ------GREHWNEMLAN 123 (134)
T ss_pred CCCCCCceeEEEEECCCCCCc------hHHHHHHHHHC
Confidence 999999999999999863221 23566665444
No 195
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.46 E-value=3.2e-13 Score=128.74 Aligned_cols=113 Identities=17% Similarity=0.336 Sum_probs=90.2
Q ss_pred ceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC------eeeeeeeecCCCCCeeeeEEEEeec--CCCC
Q 045058 259 TASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN------YKGITKHYEKNQNPQWHQVFAFSRD--RMQA 330 (1005)
Q Consensus 259 ~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~~~nP~wne~f~f~~~--~~~~ 330 (1005)
++..|+. ..+.|.|+|++|+||+..+..|.+||||++++.+ .++||++++++.||+|||+|.|.+. ++..
T Consensus 6 ~sL~Y~~--~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~ 83 (138)
T cd08408 6 LGLEYNA--LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSE 83 (138)
T ss_pred EEeEEcC--CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCc
Confidence 4455554 4489999999999999999899999999999964 2458999999999999999999976 4556
Q ss_pred cEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCC
Q 045058 331 SVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK 379 (1005)
Q Consensus 331 ~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 379 (1005)
..|.|+|||++ .+++++||++.+++...-. ....+|+.+....
T Consensus 84 ~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~------~~~~hW~~~l~~~ 127 (138)
T cd08408 84 VTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE------EEEEHWNEMKESK 127 (138)
T ss_pred cEEEEEEEECCCCCCCcEEEEEEECCcCCCc------hHHHHHHHHHhCC
Confidence 79999999998 7899999999998764321 1234676665543
No 196
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.46 E-value=2.4e-13 Score=127.15 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=81.9
Q ss_pred EEEecCCCCCCCCCCCCCCCcEEEEEECCE-------EEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCC---
Q 045058 602 ILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-------WVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQ--- 670 (1005)
Q Consensus 602 i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-------~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~--- 670 (1005)
.++|++|++.+ ..|.+||||++.+++. ..||+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 6 ~i~a~~L~~~d---~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 6 SISCRNLLDKD---VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEccCCCCCC---CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcC
Confidence 47899999654 4788999999999553 3799999999999999999998753 56789999999986
Q ss_pred -cCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeee
Q 045058 671 -LGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLL 706 (1005)
Q Consensus 671 -~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 706 (1005)
++ ++++||.+.+++++|..+.....|++|.
T Consensus 83 ~~~------~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 83 DLS------DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCC------CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 44 8999999999999998777667888884
No 197
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.43 E-value=2.2e-12 Score=122.57 Aligned_cols=116 Identities=28% Similarity=0.432 Sum_probs=96.1
Q ss_pred eEEEEEEEEeecCCCCC--CCCCCCcEEEEEEC------CeeeeeeeecCCC-CCeeeeEEEEeecCCCCcEEEEEEEeC
Q 045058 270 YFLYVRVVKARELPAMD--LTGSIDPFVEVKIG------NYKGITKHYEKNQ-NPQWHQVFAFSRDRMQASVLEVVIKDK 340 (1005)
Q Consensus 270 ~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~------~~~~kT~~~~~~~-nP~wne~f~f~~~~~~~~~l~v~V~d~ 340 (1005)
..|+|+|++|++|+..+ ..+.+||||++++. ...++|+++.++. ||.|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 36899999999999887 57889999999994 4557899887765 999999999998766556899999999
Q ss_pred CCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC-ccceEEEEEEEE
Q 045058 341 DLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE-KIKGELMLAVWI 393 (1005)
Q Consensus 341 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~G~i~l~~~~ 393 (1005)
+..++++||++.+++.++..+ ..|++|.+..+. ...|.|.+.+++
T Consensus 82 ~~~~~~~iG~~~~~l~~l~~g--------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSGDDDFLGQACLPLDSLRQG--------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCCcEeEEEEEEhHHhcCc--------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 944899999999999998532 468999887665 256899888764
No 198
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.41 E-value=1.6e-12 Score=122.29 Aligned_cols=102 Identities=25% Similarity=0.430 Sum_probs=84.2
Q ss_pred cceeeeccccceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eeeeeeeecCCCCCeeeeEEEEee-c--CCC
Q 045058 258 KTASTYDLVERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-----YKGITKHYEKNQNPQWHQVFAFSR-D--RMQ 329 (1005)
Q Consensus 258 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~~~nP~wne~f~f~~-~--~~~ 329 (1005)
.++..|+. ..+.|.|+|++|++|+..+..+.+||||++.+.+ ...+|++++++.||.|||+|.|.. . +..
T Consensus 5 ~~~l~y~~--~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~ 82 (123)
T cd04035 5 EFTLLYDP--ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQ 82 (123)
T ss_pred EEEEEEeC--CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhC
Confidence 34445554 4588999999999999988889999999999843 357999999999999999999963 2 334
Q ss_pred CcEEEEEEEeCCCCCCceeEEEEEEceecCCC
Q 045058 330 ASVLEVVIKDKDLVKDDFVGIVRFDINEVPLR 361 (1005)
Q Consensus 330 ~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~ 361 (1005)
...|.|+|||++..++++||++.+++.++..+
T Consensus 83 ~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 83 RKTLRLLVLDEDRFGNDFLGETRIPLKKLKPN 114 (123)
T ss_pred CCEEEEEEEEcCCcCCeeEEEEEEEcccCCCC
Confidence 56899999999833899999999999999754
No 199
>PLN03008 Phospholipase D delta
Probab=99.41 E-value=1.6e-12 Score=151.06 Aligned_cols=123 Identities=22% Similarity=0.415 Sum_probs=103.3
Q ss_pred eEEEEEEEEeecCCCCCC------------------------------------------CCCCCcEEEEEECCee-eee
Q 045058 270 YFLYVRVVKARELPAMDL------------------------------------------TGSIDPFVEVKIGNYK-GIT 306 (1005)
Q Consensus 270 ~~L~V~v~~a~~L~~~~~------------------------------------------~g~~dPyv~v~~~~~~-~kT 306 (1005)
|.|.|+|.+|++|+.+|. .+++||||+|.+++++ .||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 778999999999885221 2467999999998864 599
Q ss_pred eeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc--cc
Q 045058 307 KHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK--IK 384 (1005)
Q Consensus 307 ~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~ 384 (1005)
++++++.||+|||+|.|.+.... ..|.|+|||+|..++++||++.|++.++..+ .....|++|.+..+.. ..
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~G-----e~vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFGAQIIGTAKIPVRDIASG-----ERISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccCCceeEEEEEEHHHcCCC-----CceEEEEEccccCCCCCCCC
Confidence 99999999999999999998865 5899999999954579999999999999876 3468999999877643 45
Q ss_pred eEEEEEEEEeccCC
Q 045058 385 GELMLAVWIGTQAD 398 (1005)
Q Consensus 385 G~i~l~~~~~~~~d 398 (1005)
|+|++++.|.+...
T Consensus 168 ~kl~v~lqf~pv~~ 181 (868)
T PLN03008 168 TAIFIDMKFTPFDQ 181 (868)
T ss_pred cEEEEEEEEEEccc
Confidence 79999999988654
No 200
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.34 E-value=4.7e-12 Score=116.56 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=75.0
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEECCe------EeeccccCCCCCCceeeEEEEEeccCccc-cceEEEEEEEeCCC
Q 045058 7 GVQVVGAHNLLPKDGKGSSSAFVELYFDGQ------RFRTTIKENDLNPVWNESFYFNISDASKL-HYLTLEAYIYNNIG 79 (1005)
Q Consensus 7 ~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~------~~~T~v~~~t~nP~Wne~f~f~v~~~~~~-~~~~l~v~V~d~~~ 79 (1005)
.+-.++|++|+.+|..|.+||||+|++.+. .++|+++++++||+|| +|.|.+...... ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 455679999999999999999999998543 5899999999999999 788875322111 13589999999964
Q ss_pred CCCCCcccEEEEEeCCcccCCC
Q 045058 80 DTNSRSFLGKVCLTGNSFVPLS 101 (1005)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~ 101 (1005)
.++|++||++.+++.++....
T Consensus 82 -~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 82 -SGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred -CCCCcEEEEEEEEHHHHhcCC
Confidence 568999999999999987443
No 201
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.31 E-value=9.3e-12 Score=114.61 Aligned_cols=87 Identities=21% Similarity=0.336 Sum_probs=74.7
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEECCe------eeeeeeecCCCCCeeeeEEEEeecCCC----CcEEEEEEEeCC-C
Q 045058 274 VRVVKARELPAMDLTGSIDPFVEVKIGNY------KGITKHYEKNQNPQWHQVFAFSRDRMQ----ASVLEVVIKDKD-L 342 (1005)
Q Consensus 274 V~v~~a~~L~~~~~~g~~dPyv~v~~~~~------~~kT~~~~~~~nP~wne~f~f~~~~~~----~~~l~v~V~d~~-~ 342 (1005)
+..++|++|+..+..|.+||||++++.+. .++|++++++.||.|| .|.|...++. ...|.|+|||++ .
T Consensus 4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~ 82 (110)
T cd04047 4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS 82 (110)
T ss_pred EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence 45678999999999999999999998653 4799999999999999 7888765432 468999999999 7
Q ss_pred CCCceeEEEEEEceecCCC
Q 045058 343 VKDDFVGIVRFDINEVPLR 361 (1005)
Q Consensus 343 ~~d~~lG~~~i~l~~l~~~ 361 (1005)
++|++||++.+++.++...
T Consensus 83 ~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 83 GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCcEEEEEEEEHHHHhcC
Confidence 7899999999999999743
No 202
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.30 E-value=5.8e-12 Score=160.54 Aligned_cols=118 Identities=20% Similarity=0.273 Sum_probs=98.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
|.|+|+|++|+||. +..|.+||||++.++++ +.||++++++.||+|||.|.|.+.++. ....|.|+|||+| .+
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~--~~~~l~iev~d~d-~f- 2053 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPP--KGQKLHISCKSKN-TF- 2053 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCC--CCCceEEEEEecC-cc-
Confidence 78999999999998 44689999999999965 889999999999999999999886654 2357999999996 45
Q ss_pred CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeE---EEEEEEEec
Q 045058 83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGE---LGLKVYITD 131 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~---i~l~~~~~~ 131 (1005)
+++.||.+.|++.++...+.. ..||+|.+.+. ..|. |.+.+.|.+
T Consensus 2054 ~kd~~G~~~i~l~~vv~~~~~-~~~~~L~~~~~---k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 GKSSLGKVTIQIDRVVMEGTY-SGEYSLNPESN---KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CCCCCceEEEEHHHHhcCcee-eeeeecCcccc---cCCCcceEEEEEEecC
Confidence 555999999999999887765 46999996542 2466 888887754
No 203
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.30 E-value=9.1e-12 Score=108.80 Aligned_cols=82 Identities=30% Similarity=0.579 Sum_probs=71.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDG---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
|+|+|++|+||...+..+.+||||++++.+ ..++|++++++.+|.|||+|.|.+...+. ..|.|+|||++ ..+
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~---~~l~~~V~~~~-~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDL---DSLSFEVWDKD-SFG 76 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCG---TEEEEEEEEET-SSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccc---cceEEEEEECC-CCC
Confidence 789999999999988888999999999987 67999999999999999999999765442 34999999984 455
Q ss_pred CCcccEEEE
Q 045058 83 SRSFLGKVC 91 (1005)
Q Consensus 83 ~d~~lG~~~ 91 (1005)
+|++||++.
T Consensus 77 ~~~~iG~~~ 85 (85)
T PF00168_consen 77 KDELIGEVK 85 (85)
T ss_dssp SEEEEEEEE
T ss_pred CCCEEEEEC
Confidence 799999974
No 204
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.26 E-value=7.4e-13 Score=146.52 Aligned_cols=123 Identities=27% Similarity=0.438 Sum_probs=103.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC--------------------------C-----eEeeccccCCCCCCcee
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFD--------------------------G-----QRFRTTIKENDLNPVWN 52 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~--------------------------~-----~~~~T~v~~~t~nP~Wn 52 (1005)
..+.|.+..|+||.++|.+|.+|||+...+- | -.+-|+|+++|+||+|+
T Consensus 114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~ 193 (1103)
T KOG1328|consen 114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWS 193 (1103)
T ss_pred HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchh
Confidence 3456778899999999999999999998860 1 13568899999999999
Q ss_pred eEEEEEeccCccccceEEEEEEEeCCCC--------------------------------CCC---CcccEEEEEeCCcc
Q 045058 53 ESFYFNISDASKLHYLTLEAYIYNNIGD--------------------------------TNS---RSFLGKVCLTGNSF 97 (1005)
Q Consensus 53 e~f~f~v~~~~~~~~~~l~v~V~d~~~~--------------------------------~~~---d~~lG~~~i~l~~l 97 (1005)
|.|.|.|.+ ++...+.+.+||+|+. .+. |||||++.|++.++
T Consensus 194 EkF~F~IeD---v~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 194 EKFQFTIED---VQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred hheeeehhc---cccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 999999954 4567899999999322 223 89999999999999
Q ss_pred cCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 98 VPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 98 ~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
...|- +.||.|++++..++++|.+++++++..
T Consensus 271 P~~Gl--d~WFkLepRS~~S~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 271 PPDGL--DQWFKLEPRSDKSKVQGQVKLKLWLST 302 (1103)
T ss_pred CcchH--HHHhccCcccccccccceEEEEEEEee
Confidence 88775 479999999999999999999999877
No 205
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.4e-11 Score=134.58 Aligned_cols=121 Identities=26% Similarity=0.467 Sum_probs=105.4
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCC------
Q 045058 269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDL------ 342 (1005)
Q Consensus 269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~------ 342 (1005)
...+.++|+.|.+|..+|..|++||||.+.++..+.+|++|...+||+|||.|.|..++.. +.|.+.|||.|.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnst-drikvrvwded~dlkskl 372 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNST-DRIKVRVWDEDNDLKSKL 372 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCC-ceeEEEEecCcccHHHHH
Confidence 3568899999999999999999999999999999999999999999999999999998876 689999999862
Q ss_pred ------CCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc-cceEEEEEEEEeccC
Q 045058 343 ------VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK-IKGELMLAVWIGTQA 397 (1005)
Q Consensus 343 ------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~~~~ 397 (1005)
.+|||||+..|.+..+. ...+.||+|+....++ ..|.|++.+.+.-.+
T Consensus 373 rqkl~resddflgqtvievrtls-------gemdvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 373 RQKLTRESDDFLGQTVIEVRTLS-------GEMDVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HHHhhhcccccccceeEEEEecc-------cchhhhcchhhccchhhccceEEEEEEEEEcC
Confidence 46999999999999885 3478899999877655 789888888765433
No 206
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.24 E-value=3.8e-11 Score=104.84 Aligned_cols=81 Identities=36% Similarity=0.571 Sum_probs=73.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC---eeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCce
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGN---YKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDF 347 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~ 347 (1005)
|.|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.+|.|+|.|.|.+.......|.|+|||++ .+++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 689999999999988888999999999988 5689999999999999999999977666667999999999 667999
Q ss_pred eEEEE
Q 045058 348 VGIVR 352 (1005)
Q Consensus 348 lG~~~ 352 (1005)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
No 207
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=99.24 E-value=1.4e-10 Score=130.39 Aligned_cols=177 Identities=23% Similarity=0.379 Sum_probs=123.4
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHH---HHhhcccccCCchhHHHHHHHHHHHHhcccch---HHHHHHHHHHHhhhccc
Q 045058 793 LWSMRRSKANFFRLMTVFSGLFAVG---KWFADICMWKNPITTVLVHVLYLMLACFPELI---LPTVFLYMFLIGIWNYR 866 (1005)
Q Consensus 793 ~fs~~~~k~n~~rl~~~~~~~~~~~---~~~~~l~~W~~p~~t~~~~~~~~~~~~~~~l~---~p~~~l~~~~~~~~~~~ 866 (1005)
.+|++.+..|+.++.+.+..++.++ +.+.++++|++|..|..++++|.++|++|.+. +|++++ ++++++..|.
T Consensus 2 ~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~yl 80 (359)
T PF06398_consen 2 PLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSYL 80 (359)
T ss_pred CcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4788999999999999999999999 99999999999999999999999999999883 454433 2333444443
Q ss_pred cC-CCCCCCCCcccccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHhh----ccccC
Q 045058 867 YR-PRYPPHMNIKISQAEAVHPDELDEEFDTFPTSRSPELVRMRYDRLRSVAGRIQTVVGDVATQGERLQA----LISWR 941 (1005)
Q Consensus 867 ~~-~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~----l~~w~ 941 (1005)
.+ |...+.... ...+.+.+.+..|+-.+. ...+...++.+||.|+.+.+.++.+.. +++|+
T Consensus 81 ~~~p~~~~~~~~--------~~~~~~~~~~~~ptl~~~------s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 81 YRHPSPTSSLPK--------SYEDHNPEPSEGPTLDKP------SREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred eecCCCcccccc--------cccccCCCcCCCCCcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC
Confidence 33 222211100 000111111111111101 234556777899999999999998875 45799
Q ss_pred CchhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhh-hhcCCccCC
Q 045058 942 DPRATAIFITFCLVAALVL----FLTPFQVIAALAGFW-VMRHPRFRR 984 (1005)
Q Consensus 942 ~p~~t~~~~~~~~~~~~v~----~~iP~r~i~l~~g~~-~~~~P~f~~ 984 (1005)
++..|.+++.+|+++.+.+ ++||+|++++++|.. .+.||..++
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~ 194 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQ 194 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHH
Confidence 9999998888887777654 468999999999944 468997664
No 208
>PLN02270 phospholipase D alpha
Probab=99.23 E-value=6.2e-11 Score=138.30 Aligned_cols=126 Identities=20% Similarity=0.291 Sum_probs=107.0
Q ss_pred ceEEEEEEEEecCCCCCCC---------------CCCCCCCCcEEEEEECCEEE-EeeeccCC-CCceeccEEEEEEeCC
Q 045058 595 IGILELGILNAVGLHPMKT---------------RDGRGTSDTYCVAKYGHKWV-RTRTLVDN-LSPKYNEQYTWEVFDP 657 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~---------------~~~~~~~dpyv~~~~g~~~~-~T~~~~~t-~nP~wne~f~~~v~~~ 657 (1005)
-|.|.++|++|++|+.++. +.+.+.+||||.|.+++.++ ||+++.+. .||+|||.|.+++..+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 3899999999999986421 12346789999999988765 99999875 6999999999999999
Q ss_pred CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058 658 ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC 727 (1005)
Q Consensus 658 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~ 727 (1005)
.+.|+|.|.|.|.++ ..+||++.||+.+|..|...++||++.....+-.+....|+++++|.+
T Consensus 87 ~~~v~f~vkd~~~~g-------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~ 149 (808)
T PLN02270 87 ASNIIFTVKDDNPIG-------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFE 149 (808)
T ss_pred cceEEEEEecCCccC-------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEE
Confidence 999999999999876 569999999999999999999999998666554434458999999976
No 209
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.20 E-value=1e-10 Score=108.80 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=77.8
Q ss_pred EEEEEEEecCCCCCCCCCCCC--CCCcEEEEEECC---EEEEeeeccCCCC--ceeccEEEEEEeCC-------------
Q 045058 598 LELGILNAVGLHPMKTRDGRG--TSDTYCVAKYGH---KWVRTRTLVDNLS--PKYNEQYTWEVFDP------------- 657 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~--~~dpyv~~~~g~---~~~~T~~~~~t~n--P~wne~f~~~v~~~------------- 657 (1005)
|+|.|.+|+|++..+. +..| .+||||++.+.+ ...+|.++++++| |+||++|.|++.-+
T Consensus 2 LRViIw~~~~v~~~~~-~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCccccc-ccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 7999999999775542 2244 499999999943 5689999999999 99999999987541
Q ss_pred -----------CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCC
Q 045058 658 -----------ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGR 697 (1005)
Q Consensus 658 -----------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 697 (1005)
...|+|+|||+|.++ +|++||.+.++|+.+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFS------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccC------CCCcceEEEEEhhhccccc
Confidence 358999999999877 8999999999999988765
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.11 E-value=4.3e-10 Score=101.36 Aligned_cols=101 Identities=35% Similarity=0.558 Sum_probs=83.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECC-eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFDG-QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR 84 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d 84 (1005)
|.|.|++|++|......+.++|||.+.+.+ ..++|.+..++.||.|||.|.|.+... ....|.|.||+++. ...+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~-~~~~ 76 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDR-FSKD 76 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCC-CCCC
Confidence 579999999998876777899999999998 789999999999999999999998652 23589999999853 4468
Q ss_pred cccEEEEEeCCcccCCCCceeeeEec
Q 045058 85 SFLGKVCLTGNSFVPLSDSVVLHYPL 110 (1005)
Q Consensus 85 ~~lG~~~i~l~~l~~~~~~~~~w~~L 110 (1005)
++||.+.+++.++.........|++|
T Consensus 77 ~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 77 DFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ceeEEEEEeHHHhhhcCCcCcceecC
Confidence 99999999999987223333467765
No 211
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.09 E-value=6e-10 Score=100.42 Aligned_cols=99 Identities=31% Similarity=0.509 Sum_probs=84.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECC-EEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCcCCCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGH-KWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQLGEKS 675 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~-~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~~~~~ 675 (1005)
|.|.|++|++|... ...+..+|||.+.+.+ ..++|+++.++.||.||+.|.|++.. ....|.|+|||.+...
T Consensus 1 l~v~i~~~~~l~~~---~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCc---CCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 47899999999854 2356789999999987 88999999999999999999999988 6789999999998654
Q ss_pred CCCCCcccEEEEEEccccc-CCCEEeeeEee
Q 045058 676 NGNKDLKIGKVRIRISTLE-TGRIYTHSYPL 705 (1005)
Q Consensus 676 ~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 705 (1005)
.+.+||.+.+++.++. .......|++|
T Consensus 75 ---~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 ---KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ---CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6899999999999988 55555677764
No 212
>PLN02223 phosphoinositide phospholipase C
Probab=99.08 E-value=8.8e-10 Score=123.84 Aligned_cols=118 Identities=18% Similarity=0.273 Sum_probs=90.8
Q ss_pred cEEEEEEEEeecCCC-----CCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEE
Q 045058 4 LKLGVQVVGAHNLLP-----KDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAY 73 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~-----~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~ 73 (1005)
..|.|+|++|.++.. .+.....||||+|.+.| .+++|++..|+.||+|||+|.|.+..++- ..|.|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL---AlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL---ALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc---eEEEEE
Confidence 469999999999751 12234579999999865 25788898999999999999999987762 579999
Q ss_pred EEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 74 IYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 74 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
|+|+| ...+|+|+|++.+|+..|..+- .+++|..+.+..-..-.+.+++.+
T Consensus 486 V~D~D-~~~~ddfiGQ~~LPv~~Lr~Gy----R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 486 VYDYE-VSTADAFCGQTCLPVSELIEGI----RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEecC-CCCCCcEEEEEecchHHhcCCc----eeEeccCCCcCCCCCceEEEEEEe
Confidence 99995 4458999999999999987754 468888775543334455555543
No 213
>PLN02223 phosphoinositide phospholipase C
Probab=99.05 E-value=2e-09 Score=121.10 Aligned_cols=120 Identities=19% Similarity=0.249 Sum_probs=90.9
Q ss_pred ceEEEEEEEEecCCCCC--CCCCCCCCCCcEEEEEECC-----EEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEE
Q 045058 595 IGILELGILNAVGLHPM--KTRDGRGTSDTYCVAKYGH-----KWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVF 666 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~--~~~~~~~~~dpyv~~~~g~-----~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~ 666 (1005)
...|+|+|+.|++++.. +..+.....||||+|.+.| ...+|++..++.||+|||+|+|++..| -..|.|+|+
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 46799999999998621 1112234579999999843 346787777889999999999999887 468999999
Q ss_pred eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058 667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIR 724 (1005)
Q Consensus 667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~ 724 (1005)
|+|... +|+|+|...+|++.|..|- +..+|....+.... .-.|.+++.
T Consensus 488 D~D~~~------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~ 535 (537)
T PLN02223 488 DYEVST------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFK 535 (537)
T ss_pred ecCCCC------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEE
Confidence 998655 7999999999999999996 77888755543332 244555444
No 214
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.05 E-value=1.2e-09 Score=98.49 Aligned_cols=91 Identities=31% Similarity=0.510 Sum_probs=79.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE---EEEeeeccCCCCceeccEEEEEEeCC-CceEEEEEEeCCCcCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK---WVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGVFDNSQLGE 673 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~---~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v~d~~~~~~ 673 (1005)
|.+.|++|++|.... ..+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||++..+
T Consensus 2 l~i~i~~~~~l~~~~---~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKD---KKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCC---CCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 689999999998643 2356899999999764 78999999999999999999999887 889999999997543
Q ss_pred CCCCCCCcccEEEEEEcccccCCC
Q 045058 674 KSNGNKDLKIGKVRIRISTLETGR 697 (1005)
Q Consensus 674 ~~~~~~d~~lG~~~i~l~~l~~~~ 697 (1005)
.+.+||.+.+++.++..+.
T Consensus 78 -----~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 -----RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred -----CCceeEEEEEEHHHcccCc
Confidence 6899999999999988765
No 215
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.01 E-value=1.9e-09 Score=100.31 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=78.3
Q ss_pred EEEEEEEEeecCCCC--CCCC--CCCcEEEEEECC---eEeeccccCCCCC--CceeeEEEEEeccC-------------
Q 045058 5 KLGVQVVGAHNLLPK--DGKG--SSSAFVELYFDG---QRFRTTIKENDLN--PVWNESFYFNISDA------------- 62 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~--d~~g--~~dpyv~v~~~~---~~~~T~v~~~t~n--P~Wne~f~f~v~~~------------- 62 (1005)
.|+|.|..|+|++.. +..| .+||||++.+.+ .+++|.|.++++| |.||++|.|++.-.
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 389999999996643 3356 499999999975 4799999999999 99999999987541
Q ss_pred -------ccccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCC
Q 045058 63 -------SKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLS 101 (1005)
Q Consensus 63 -------~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~ 101 (1005)
+......|.+.|||.|. ++.|++||++.++|..+....
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~-~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDK-FSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcc-cCCCCcceEEEEEhhhccccc
Confidence 23456789999999965 568999999999999876543
No 216
>PLN02952 phosphoinositide phospholipase C
Probab=98.98 E-value=5.2e-09 Score=120.53 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=92.6
Q ss_pred ceEEEEEEEEecCCCCCCC---CCCCCCCCcEEEEEE-C----CEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEE
Q 045058 595 IGILELGILNAVGLHPMKT---RDGRGTSDTYCVAKY-G----HKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGV 665 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~---~~~~~~~dpyv~~~~-g----~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v 665 (1005)
...|+|+|+.|++|+.... .+.....||||+|.+ | ....+|+++.++.||+|||+|.|++..| -..|.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 4689999999999863211 122234599999988 3 3467999999999999999999999876 46899999
Q ss_pred EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058 666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
+|+|..+ .++++|...|||+.|..|. +|++|....+... +...|-++|.
T Consensus 549 ~D~D~~~------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l---~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE------KDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKL---KNVRLLMRFI 597 (599)
T ss_pred EecCCCC------CCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCC---CCEEEEEEEE
Confidence 9998655 7999999999999999997 6899974443322 4455555553
No 217
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.98 E-value=4.5e-09 Score=94.76 Aligned_cols=90 Identities=34% Similarity=0.610 Sum_probs=79.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCe---eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCce
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNY---KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDF 347 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~ 347 (1005)
|.|+|++|++|......+..+|||++++.+. ..+|+++.++.||.|||.|.|.+.......|.|+|||.+ .+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 6799999999998776678899999999875 689999999999999999999988775689999999998 557999
Q ss_pred eEEEEEEceecCCC
Q 045058 348 VGIVRFDINEVPLR 361 (1005)
Q Consensus 348 lG~~~i~l~~l~~~ 361 (1005)
+|.+.+++.++..+
T Consensus 82 ~G~~~~~l~~~~~~ 95 (101)
T smart00239 82 IGQVTIPLSDLLLG 95 (101)
T ss_pred eEEEEEEHHHcccC
Confidence 99999999988754
No 218
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.97 E-value=2.2e-09 Score=116.34 Aligned_cols=120 Identities=24% Similarity=0.434 Sum_probs=101.4
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceec-cEEEEEEeCC---CceEEEEEEeCCCc
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYN-EQYTWEVFDP---ATVLTVGVFDNSQL 671 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wn-e~f~~~v~~~---~~~l~i~v~d~~~~ 671 (1005)
|.|.|+|..|++|+.||. ....+|.||.+++++..++|.+..+++||.|| +=|.|+|.|. ...|+|.++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdk--asd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDK--ASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCccccc--ccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 789999999999999984 24567999999999999999999999999999 5688999863 57999999999987
Q ss_pred CCCCCCCCCcccEEEEEEcccccC----------CCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058 672 GEKSNGNKDLKIGKVRIRISTLET----------GRIYTHSYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 672 ~~~~~~~~d~~lG~~~i~l~~l~~----------~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
+ .+|-||++.|++..|.- |.....|||+...-. | -+|+|.+-+++.
T Consensus 81 s------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih-g--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH-G--IRGEINVIVKVD 136 (1169)
T ss_pred c------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc-c--ccceeEEEEEEe
Confidence 7 89999999999988753 346789999974332 2 249999888864
No 219
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.95 E-value=2.8e-09 Score=92.21 Aligned_cols=87 Identities=21% Similarity=0.351 Sum_probs=73.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN 676 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~ 676 (1005)
|+|+|..|+|+.........+++||||++++++. ++||++ +.||.|||.|.|+| +....+.|.|||..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~------- 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKG------- 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCC-------
Confidence 6789999999997653335778999999999887 789998 58999999999999 66889999999984
Q ss_pred CCCCcccEEEEEEcccccC
Q 045058 677 GNKDLKIGKVRIRISTLET 695 (1005)
Q Consensus 677 ~~~d~~lG~~~i~l~~l~~ 695 (1005)
++..-.||-.-|.|++|..
T Consensus 70 ~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CCeecceeeehhhHHHHHH
Confidence 3356789999999998753
No 220
>PLN02952 phosphoinositide phospholipase C
Probab=98.93 E-value=7.8e-09 Score=119.11 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=89.0
Q ss_pred cEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEE
Q 045058 4 LKLGVQVVGAHNLLPK------DGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEA 72 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v 72 (1005)
..|.|+|++|.+++.. +.....||||+|.+-| .+.+|+++.++.||+|||+|.|.+..++ -..|.|
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE---LAllrf 546 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE---LALLRI 546 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC---ccEEEE
Confidence 5799999999997531 1123359999999854 4789999999999999999999987765 257899
Q ss_pred EEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058 73 YIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVY 128 (1005)
Q Consensus 73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 128 (1005)
.|+|+|. .+.|+|+|++.+++..|..+- .|++|....+.....-.+.+++.
T Consensus 547 ~V~D~D~-~~~ddfiGq~~lPv~~Lr~Gy----R~VpL~~~~G~~l~~a~Llv~f~ 597 (599)
T PLN02952 547 EVREYDM-SEKDDFGGQTCLPVSELRPGI----RSVPLHDKKGEKLKNVRLLMRFI 597 (599)
T ss_pred EEEecCC-CCCCCeEEEEEcchhHhcCCc----eeEeCcCCCCCCCCCEEEEEEEE
Confidence 9999854 458999999999999987754 48999866554333334445443
No 221
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.91 E-value=4.2e-09 Score=114.19 Aligned_cols=121 Identities=27% Similarity=0.416 Sum_probs=100.5
Q ss_pred cEEEEEEEEeecCCCCCCC-CCCCcEEEEEECCeEeeccccCCCCCCcee-eEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058 4 LKLGVQVVGAHNLLPKDGK-GSSSAFVELYFDGQRFRTTIKENDLNPVWN-ESFYFNISDASKLHYLTLEAYIYNNIGDT 81 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~-g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 81 (1005)
++|.|+|..||+|+.+|+. ...|.||+|.+.+..+||.|..+++||.|| ++|.|++.+.+ ++...|.|++.|+| ..
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddad-lqdeplqi~lld~d-ty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDAD-LQDEPLQIRLLDHD-TY 80 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhh-hccCCeeEEEeccc-cc
Confidence 6789999999999999875 457999999999999999999999999998 78999998765 88899999999995 45
Q ss_pred CCCcccEEEEEeCCcccC---------CCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058 82 NSRSFLGKVCLTGNSFVP---------LSDSVVLHYPLEKRGIFSHVRGELGLKVY 128 (1005)
Q Consensus 82 ~~d~~lG~~~i~l~~l~~---------~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 128 (1005)
+.++-||.+.|++..|.. .+.....|+|+-+.-. .++|+|.+-+.
T Consensus 81 sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih--girgeinvivk 134 (1169)
T KOG1031|consen 81 SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH--GIRGEINVIVK 134 (1169)
T ss_pred ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc--cccceeEEEEE
Confidence 689999999999977622 2233457999877643 46888876553
No 222
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.89 E-value=1.2e-08 Score=117.38 Aligned_cols=118 Identities=20% Similarity=0.256 Sum_probs=90.5
Q ss_pred cEEEEEEEEeecCCCC------CCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEE
Q 045058 4 LKLGVQVVGAHNLLPK------DGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEA 72 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~------d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v 72 (1005)
..|.|+|+++.++... +.....||||+|.+-| .+.+|++..++.||+|||+|.|.+.-++ -..|.|
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE---LAllRf 545 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE---LALLRV 545 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc---eeEEEE
Confidence 5799999999987421 2234579999999854 3578999999999999999999987766 368999
Q ss_pred EEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEE
Q 045058 73 YIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
.|+|+| ...+|+|+|++.+|+..|..+- ...+|..+.+..-..-.|.+++.+
T Consensus 546 ~V~d~d-~~~~ddfiGQ~~lPv~~Lr~Gy----R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 546 EVHEHD-INEKDDFGGQTCLPVSEIRQGI----HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEECC-CCCCCCEEEEEEcchHHhhCcc----ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999985 4458999999999999987754 357887775543333456666544
No 223
>PLN02228 Phosphoinositide phospholipase C
Probab=98.89 E-value=1.7e-08 Score=115.66 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=96.3
Q ss_pred ceEEEEEEEEecCCCC---CCCCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCcee-ccEEEEEEeCC-CceEEEE
Q 045058 595 IGILELGILNAVGLHP---MKTRDGRGTSDTYCVAKYG-----HKWVRTRTLVDNLSPKY-NEQYTWEVFDP-ATVLTVG 664 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~---~~~~~~~~~~dpyv~~~~g-----~~~~~T~~~~~t~nP~w-ne~f~~~v~~~-~~~l~i~ 664 (1005)
...|+|+|+.|++|+. .+..+.....||||+|.+- ...+||+++.++.||+| ||.|.|.+..| -..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3579999999999742 1111223447999999882 34579999999899999 99999999886 4799999
Q ss_pred EEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeecc
Q 045058 665 VFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTS 729 (1005)
Q Consensus 665 v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~~ 729 (1005)
|+|+|..+ .++++|...||++.|..|- +..+|.+..+.... ..+|.+.+.+....
T Consensus 510 V~D~d~~~------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~~~ 564 (567)
T PLN02228 510 VQDYDNDT------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDPPY 564 (567)
T ss_pred EEeCCCCC------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcCcc
Confidence 99998655 7899999999999999886 67788755543332 36788888876543
No 224
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.88 E-value=6.6e-09 Score=89.93 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=67.9
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058 6 LGVQVVGAHNLLPKD---GKGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT 81 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 81 (1005)
|.|+|++|+|+...+ ..+.+||||.+.+++. +.||+. +.||.|||+|.|++... ..+++.|||+. .
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk~-----nEiel~VyDk~--~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEKN-----NEEEVIVYDKG--G 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecCC-----cEEEEEEEeCC--C
Confidence 689999999998877 5678999999999986 899987 48999999999999432 48999999973 3
Q ss_pred CCCcccEEEEEeCCccc
Q 045058 82 NSRSFLGKVCLTGNSFV 98 (1005)
Q Consensus 82 ~~d~~lG~~~i~l~~l~ 98 (1005)
...--||..-+.++++.
T Consensus 71 ~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 DQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CeecceeeehhhHHHHH
Confidence 34567777777776653
No 225
>PLN02270 phospholipase D alpha
Probab=98.87 E-value=2e-08 Score=117.75 Aligned_cols=122 Identities=16% Similarity=0.280 Sum_probs=102.4
Q ss_pred eEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEECCee-eeeeeecCC-CCCeeeeEEEEeecCCC
Q 045058 270 YFLYVRVVKARELPAMD------------------LTGSIDPFVEVKIGNYK-GITKHYEKN-QNPQWHQVFAFSRDRMQ 329 (1005)
Q Consensus 270 ~~L~V~v~~a~~L~~~~------------------~~g~~dPyv~v~~~~~~-~kT~~~~~~-~nP~wne~f~f~~~~~~ 329 (1005)
|.|.|+|.+|++|+..+ ..+.+||||.|.+++.+ .||+++.+. .||.|+|.|.+.+....
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 67999999999998631 13578999999999865 599999884 69999999999998776
Q ss_pred CcEEEEEEEeCCCCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccc--eEEEEEEEEeccC
Q 045058 330 ASVLEVVIKDKDLVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIK--GELMLAVWIGTQA 397 (1005)
Q Consensus 330 ~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~--G~i~l~~~~~~~~ 397 (1005)
..|.|+|+|.+..+..+||.+.|++.++..+ .....|+++.+..++... ..|+++++|.+..
T Consensus 88 -~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g-----~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 88 -SNIIFTVKDDNPIGATLIGRAYIPVEEILDG-----EEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred -ceEEEEEecCCccCceEEEEEEEEHHHhcCC-----CccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 5899999999976778999999999999876 358899999998766533 3899999998743
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.86 E-value=1.7e-08 Score=116.10 Aligned_cols=121 Identities=19% Similarity=0.261 Sum_probs=91.9
Q ss_pred ceEEEEEEEEecCCCCCCCC---CCCCCCCcEEEEEE-C----CEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEE
Q 045058 595 IGILELGILNAVGLHPMKTR---DGRGTSDTYCVAKY-G----HKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGV 665 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~---~~~~~~dpyv~~~~-g----~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v 665 (1005)
...|.|+|+.+++++....+ +.....||||+|.+ | ....+|+++.++.||+|||+|.|++.-| -+.|.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 46799999999997532111 22334699999998 2 2346899888999999999999999887 57999999
Q ss_pred EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
+|+|... +|+|+|...||++.|..|- +..+|....+.... .-.|.+++.|
T Consensus 548 ~d~d~~~------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EECCCCC------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 9998654 8999999999999999996 57788754443322 2455555544
No 227
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.86 E-value=2.6e-08 Score=114.41 Aligned_cols=121 Identities=21% Similarity=0.253 Sum_probs=91.8
Q ss_pred ceEEEEEEEEecCCCC--CC-CCCCCCCCCcEEEEEEC-----CEEEEeeeccCCCCceeccEEEEEEeCC-CceEEEEE
Q 045058 595 IGILELGILNAVGLHP--MK-TRDGRGTSDTYCVAKYG-----HKWVRTRTLVDNLSPKYNEQYTWEVFDP-ATVLTVGV 665 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~--~~-~~~~~~~~dpyv~~~~g-----~~~~~T~~~~~t~nP~wne~f~~~v~~~-~~~l~i~v 665 (1005)
...|+|+|+.+++++. .+ ..+.....||||+|.+- ....||+++.++.||+|||.|+|.+..| -..|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 4689999999998531 11 11223457999999983 3457999999999999999999999876 47999999
Q ss_pred EeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 666 FDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 666 ~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
+|+|... .+++||...||++.|..|- +..+|....+.... ...|.+.+.|
T Consensus 531 ~d~D~~~------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EECCCCC------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 9998654 7999999999999999996 67788755443322 2455555554
No 228
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.85 E-value=1.2e-08 Score=116.59 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=95.2
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEECCe-----Eeecc-ccCCCCCCceeeEEEEEeccCccccceEEEEEE
Q 045058 5 KLGVQVVGAHNLLPKDG----KGSSSAFVELYFDGQ-----RFRTT-IKENDLNPVWNESFYFNISDASKLHYLTLEAYI 74 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~----~g~~dpyv~v~~~~~-----~~~T~-v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V 74 (1005)
.|.|+|+++.++...-. ...+||||.|++-|. +.+|+ +..|+.||.|+|+|+|.+..++- ..|.|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL---AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL---ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce---eEEEEEE
Confidence 59999999997764322 246899999998663 68999 77899999999999999988873 6899999
Q ss_pred EeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 75 YNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
+|+| ..++|+|+|++.+|+..|..+-. .++|..+.+..-..-.|-+++.+.+
T Consensus 694 ~d~d-~~~~ddF~GQ~tlP~~~L~~GyR----hVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 694 HDYD-YIGKDDFIGQTTLPVSELRQGYR----HVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EecC-CCCcccccceeeccHHHhhCcee----eeeecCCCCccccceeEEEEEEEec
Confidence 9995 55689999999999999877543 4788877665556677777776653
No 229
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.84 E-value=7e-10 Score=123.44 Aligned_cols=124 Identities=27% Similarity=0.547 Sum_probs=105.0
Q ss_pred cceeEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeeeecCCCCC
Q 045058 267 ERMYFLYVRVVKARELPAMDLTGSIDPFVEVKIGN-------------Y------------------KGITKHYEKNQNP 315 (1005)
Q Consensus 267 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------------~------------------~~kT~~~~~~~nP 315 (1005)
.|...+.|.+.+|+||..++.+|.+|||+...+.. + ..-|.+.++|+||
T Consensus 111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP 190 (1103)
T KOG1328|consen 111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP 190 (1103)
T ss_pred CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence 34566889999999999999999999999976532 0 0147788889999
Q ss_pred eeeeEEEEeecCCCCcEEEEEEEeCCC----------------------------------C---CCceeEEEEEEceec
Q 045058 316 QWHQVFAFSRDRMQASVLEVVIKDKDL----------------------------------V---KDDFVGIVRFDINEV 358 (1005)
Q Consensus 316 ~wne~f~f~~~~~~~~~l~v~V~d~~~----------------------------------~---~d~~lG~~~i~l~~l 358 (1005)
.|+|.|.|.+++.+.+.+++.+||+|. + .|||||.+.|+|.++
T Consensus 191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 999999999999999999999999851 2 389999999999999
Q ss_pred CCCCCCCCCCCCeEEEeecCCCCc-cceEEEEEEEEecc
Q 045058 359 PLRVPPDSPLAPEWYRLEDKKGEK-IKGELMLAVWIGTQ 396 (1005)
Q Consensus 359 ~~~~~~~~~~~~~w~~L~~~~~~~-~~G~i~l~~~~~~~ 396 (1005)
.. .+.++||+|+..+..+ +.|.+++.+|..+.
T Consensus 271 P~------~Gld~WFkLepRS~~S~VqG~~~LklwLsT~ 303 (1103)
T KOG1328|consen 271 PP------DGLDQWFKLEPRSDKSKVQGQVKLKLWLSTK 303 (1103)
T ss_pred Cc------chHHHHhccCcccccccccceEEEEEEEeee
Confidence 75 3689999999988765 89999999999763
No 230
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.79 E-value=5e-08 Score=112.16 Aligned_cols=117 Identities=19% Similarity=0.206 Sum_probs=88.6
Q ss_pred cEEEEEEEEeecCC---CC---CCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEE
Q 045058 4 LKLGVQVVGAHNLL---PK---DGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEA 72 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~---~~---d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v 72 (1005)
..|.|+|+++.++. ++ +.....||||+|.+.| .+.+|+++.++.||+|||+|.|.+..++ -..|.|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe---LAllRf 528 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE---LALLRL 528 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc---eeEEEE
Confidence 47999999999853 11 2234579999999854 3689999999899999999999987666 368999
Q ss_pred EEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058 73 YIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVY 128 (1005)
Q Consensus 73 ~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 128 (1005)
.|+|+|. ..+|+|+|++.+|+..|..+- ..++|..+.+..-..-.+.+.+.
T Consensus 529 ~V~d~D~-~~~ddfigq~~lPv~~Lr~Gy----R~V~L~~~~g~~l~~a~Lfv~~~ 579 (581)
T PLN02222 529 EVHEYDM-SEKDDFGGQTCLPVWELSQGI----RAFPLHSRKGEKYKSVKLLVKVE 579 (581)
T ss_pred EEEECCC-CCCCcEEEEEEcchhhhhCcc----ceEEccCCCcCCCCCeeEEEEEE
Confidence 9999854 458999999999999987653 35788777554333345555554
No 231
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.78 E-value=3.1e-08 Score=113.46 Aligned_cols=120 Identities=21% Similarity=0.337 Sum_probs=94.2
Q ss_pred EEEEEEEEecCCCCCCCCC-CCCCCCcEEEEEECC-----EEEEeeecc-CCCCceeccEEEEEEeCC-CceEEEEEEeC
Q 045058 597 ILELGILNAVGLHPMKTRD-GRGTSDTYCVAKYGH-----KWVRTRTLV-DNLSPKYNEQYTWEVFDP-ATVLTVGVFDN 668 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~-~~~~~dpyv~~~~g~-----~~~~T~~~~-~t~nP~wne~f~~~v~~~-~~~l~i~v~d~ 668 (1005)
.|.|+|+.++|+.+...+. .+..+||||.|++-| ...+|+++. ++.||.|+|+|+|++..| -+-|.+.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999887643322 235689999999843 246999655 679999999999999987 57999999999
Q ss_pred CCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058 669 SQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
|..+ +|+|+|...||++.|..|- +-.||.+..+... ...+|.+.+.+.
T Consensus 697 d~~~------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred CCCC------cccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence 9766 8999999999999999986 5678875543333 236777777653
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.77 E-value=6.3e-08 Score=111.02 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=93.3
Q ss_pred cEEEEEEEEeecCC---CCC---CCCCCCcEEEEEECC-----eEeeccccCCCCCCce-eeEEEEEeccCccccceEEE
Q 045058 4 LKLGVQVVGAHNLL---PKD---GKGSSSAFVELYFDG-----QRFRTTIKENDLNPVW-NESFYFNISDASKLHYLTLE 71 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~---~~d---~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~W-ne~f~f~v~~~~~~~~~~l~ 71 (1005)
..|.|+|++|.+|. ..+ .....||||+|.+.| .+++|+++.++.||+| ||+|.|.+..++ -..|.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE---LA~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE---LALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc---eeEEE
Confidence 46999999999873 112 233479999999854 3679999989999999 999999987766 36899
Q ss_pred EEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 72 AYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 72 v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
|.|+|+| ..+.|+|+|++.|++..|..+- ..++|....+..-...+|.+++.+.+
T Consensus 508 f~V~D~d-~~~~d~figq~~lPv~~Lr~GY----R~VpL~~~~G~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 508 FKVQDYD-NDTQNDFAGQTCLPLPELKSGV----RAVRLHDRAGKAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEEeCC-CCCCCCEEEEEEcchhHhhCCe----eEEEccCCCCCCCCCeEEEEEEEEcC
Confidence 9999985 4558999999999999986643 35788777665445567888887655
No 233
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.68 E-value=8.7e-08 Score=108.36 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=84.0
Q ss_pred ceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-----CCEEEEe-eeccCCCCceec-cEEEEEEeCC-CceEEEEEE
Q 045058 595 IGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-----GHKWVRT-RTLVDNLSPKYN-EQYTWEVFDP-ATVLTVGVF 666 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-----g~~~~~T-~~~~~t~nP~wn-e~f~~~v~~~-~~~l~i~v~ 666 (1005)
.-.|.|.|++|+.|+. .+.|-..|||.|++ +..+++| .++.+++||+|| |.|+|+|.+| ...|.+.|+
T Consensus 1064 p~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred ceEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence 3578999999999993 45677789999988 2344544 455578999999 9999999998 579999999
Q ss_pred eCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecC
Q 045058 667 DNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLH 709 (1005)
Q Consensus 667 d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 709 (1005)
|+|.++ ...|||.+..|+..|..|- +..||++..
T Consensus 1140 eeDmfs------~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y 1173 (1267)
T KOG1264|consen 1140 EEDMFS------DPNFLAQATYPVKAIKSGF---RSVPLKNGY 1173 (1267)
T ss_pred cccccC------Ccceeeeeecchhhhhccc---eeeecccCc
Confidence 999988 5669999999999999885 678887443
No 234
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.67 E-value=6.5e-08 Score=109.36 Aligned_cols=101 Identities=28% Similarity=0.467 Sum_probs=82.6
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----e-EeeccccCCCCCCcee-eEEEEEeccCccccceEEEEEEEe
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----Q-RFRTTIKENDLNPVWN-ESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~-~~~T~v~~~t~nP~Wn-e~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
..|.|.|++||.|+. .+.|.+.|||+|.+-| . .++|.|..|++||+|| |+|.|+|.+++ -..|.|.|+|
T Consensus 1065 ~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEec
Confidence 578999999999984 4556788999999844 2 4555688999999999 99999998877 3789999999
Q ss_pred CCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058 77 NIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113 (1005)
Q Consensus 77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 113 (1005)
. +.++...|||++..|+..+..+- .-.||.+.
T Consensus 1141 e-Dmfs~~~FiaqA~yPv~~ik~Gf----RsVpLkN~ 1172 (1267)
T KOG1264|consen 1141 E-DMFSDPNFLAQATYPVKAIKSGF----RSVPLKNG 1172 (1267)
T ss_pred c-cccCCcceeeeeecchhhhhccc----eeeecccC
Confidence 8 57778889999999998886643 24677665
No 235
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.53 E-value=7.8e-07 Score=99.42 Aligned_cols=181 Identities=18% Similarity=0.194 Sum_probs=123.7
Q ss_pred eEEeeecccCCCCCcccccEEEEEeeCCCCCeEEEEEEeccC----CCCCceeEEEEEcccccccccccccccceeEEcc
Q 045058 466 QVLKTKICQARTLSAVWNEDLLFVAAEPFEDHLVLTVEDRVG----PGKDEIIGRVIIPLSAIEKRADERIIHSRWFNLE 541 (1005)
Q Consensus 466 ~~~kT~~~~~~t~~P~w~e~f~f~v~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 541 (1005)
+..+|.++. +.+||.|.+.|.........+.|.+.++|.+. ....+++|+..+.++.+...... ..-+.++
T Consensus 41 e~~rte~i~-~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~----~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIR-NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL----TGPLLLK 115 (529)
T ss_pred cccceeeee-ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh----hhhhhcc
Confidence 445788887 89999999999998888888899999999764 35688999999999988754311 1111122
Q ss_pred CCCccccccccccccccceeEEEeecCCccccCCCccccCCCcccccccCCCcceEEEEEEEEecCCCCCCCCCCCCCCC
Q 045058 542 KPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDESTHYSSDLRPTAKQLWRPSIGILELGILNAVGLHPMKTRDGRGTSD 621 (1005)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~g~l~v~i~~a~~L~~~~~~~~~~~~d 621 (1005)
... ..+...+.+..+..++ . -....-.++|++|.+ +|..+++|
T Consensus 116 ~~~-----------~~~~g~iti~aee~~~---------~--------------~~~~~~~~~~~~ld~---kd~f~ksd 158 (529)
T KOG1327|consen 116 PGK-----------NAGSGTITISAEEDES---------D--------------NDVVQFSFRAKNLDP---KDFFSKSD 158 (529)
T ss_pred cCc-----------cCCcccEEEEeecccc---------c--------------CceeeeeeeeeecCc---ccccccCC
Confidence 111 1122222222211110 0 011112345888874 57899999
Q ss_pred cEEEEEE--C-CE---EEEeeeccCCCCceeccEEEEEEe-----CCCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEc
Q 045058 622 TYCVAKY--G-HK---WVRTRTLVDNLSPKYNEQYTWEVF-----DPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRI 690 (1005)
Q Consensus 622 pyv~~~~--g-~~---~~~T~~~~~t~nP~wne~f~~~v~-----~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l 690 (1005)
||..+.- + +. .++|.++++++||.|.. |.++.. ++...+.|.|||++.-+ ++++||++..++
T Consensus 159 ~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~------~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 159 PYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG------KHDLIGKFQTTL 231 (529)
T ss_pred cceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC------CcCceeEecccH
Confidence 9998754 2 22 26999999999999976 445443 34678999999998654 789999999999
Q ss_pred ccccC
Q 045058 691 STLET 695 (1005)
Q Consensus 691 ~~l~~ 695 (1005)
+++..
T Consensus 232 ~~~~~ 236 (529)
T KOG1327|consen 232 SELQE 236 (529)
T ss_pred HHhcc
Confidence 99863
No 236
>PLN02352 phospholipase D epsilon
Probab=98.52 E-value=6.2e-07 Score=105.25 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=92.2
Q ss_pred ceEEEEEEEEecCCCCCC---CCCCCCCCCcEEEEEECCEEE-EeeeccCCCCceeccEEEEEEeCCC-ceEEEEEEeCC
Q 045058 595 IGILELGILNAVGLHPMK---TRDGRGTSDTYCVAKYGHKWV-RTRTLVDNLSPKYNEQYTWEVFDPA-TVLTVGVFDNS 669 (1005)
Q Consensus 595 ~g~l~v~i~~a~~L~~~~---~~~~~~~~dpyv~~~~g~~~~-~T~~~~~t~nP~wne~f~~~v~~~~-~~l~i~v~d~~ 669 (1005)
-|.|.++|++|+-+...- ...+.+ .||||.|.+++.++ || .+.-||+|||.|.+++..+. +.|+|.|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~~- 83 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNG-KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKTK- 83 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCC-CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEecC-
Confidence 499999999998332210 011122 39999999988765 88 55569999999999999987 7999999983
Q ss_pred CcCCCCCCCCCcccEEEEEEcccccCCCE-EeeeEeeeecCCCCCceeeEEEEEEEEeec
Q 045058 670 QLGEKSNGNKDLKIGKVRIRISTLETGRI-YTHSYPLLVLHPTGVKKMGELHLAIRFSCT 728 (1005)
Q Consensus 670 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~ 728 (1005)
..+||++.||+.+|..|.. .+.||++.....+-... ..|++.++|.+.
T Consensus 84 ----------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 84 ----------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPA 132 (758)
T ss_pred ----------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEh
Confidence 5799999999999999865 89999998666544422 589999999763
No 237
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.41 E-value=2.6e-06 Score=95.28 Aligned_cols=179 Identities=18% Similarity=0.227 Sum_probs=126.0
Q ss_pred eeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-----CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058 304 GITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-----LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK 378 (1005)
Q Consensus 304 ~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 378 (1005)
.+|.++.+.+||.|.+.|.....-...+.|++.++|.+ ....+|+|++...+.++..... ...-+.++..
T Consensus 43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~-----~~~~l~~~~~ 117 (529)
T KOG1327|consen 43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG-----LTGPLLLKPG 117 (529)
T ss_pred cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh-----hhhhhhcccC
Confidence 48999999999999999988766555578999999976 2457899999999998875421 1111222221
Q ss_pred CCCccceEEEEEEEEeccCCcccccccCCCCCCCCCCCCccccccccccccCCceEEEEEEEEEeeeCCCCCCCCCCCcE
Q 045058 379 KGEKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTEKNHFPDVY 458 (1005)
Q Consensus 379 ~~~~~~G~i~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d~~~~~dpy 458 (1005)
.....|.|.+.+.-.. .. .....-..+|++|...|..+++|||
T Consensus 118 -~~~~~g~iti~aee~~-----------~~-------------------------~~~~~~~~~~~~ld~kd~f~ksd~~ 160 (529)
T KOG1327|consen 118 -KNAGSGTITISAEEDE-----------SD-------------------------NDVVQFSFRAKNLDPKDFFSKSDPY 160 (529)
T ss_pred -ccCCcccEEEEeeccc-----------cc-------------------------CceeeeeeeeeecCcccccccCCcc
Confidence 1113477776653100 00 0112223458999999999999999
Q ss_pred EEEEE--CC----eEEeeecccCCCCCcccccEEEEEee----CCCCCeEEEEEEeccCCCCCceeEEEEEccccccc
Q 045058 459 VKAQI--GN----QVLKTKICQARTLSAVWNEDLLFVAA----EPFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEK 526 (1005)
Q Consensus 459 v~v~l--g~----~~~kT~~~~~~t~~P~w~e~f~f~v~----~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 526 (1005)
..+.- +. ..++|.+++ ++++|.|... ..... ...+..+.+.+||++..+++++||++..+++++..
T Consensus 161 l~~~~~~~d~s~~~~~~tEv~~-n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 161 LEFYKRVDDGSTQMLYRTEVVK-NTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred eEEEEecCCCceeeccccceec-cCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 88876 22 367889986 9999999884 32221 12356788999999999999999999999988864
No 238
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.28 E-value=1.6e-06 Score=77.48 Aligned_cols=108 Identities=21% Similarity=0.348 Sum_probs=80.1
Q ss_pred EEEEEEEecCCCCCCC------CCC----CCCCCcEEEEEE----CCEEEEeeeccCCCCceeccEEEEEEe--------
Q 045058 598 LELGILNAVGLHPMKT------RDG----RGTSDTYCVAKY----GHKWVRTRTLVDNLSPKYNEQYTWEVF-------- 655 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~------~~~----~~~~dpyv~~~~----g~~~~~T~~~~~t~nP~wne~f~~~v~-------- 655 (1005)
|.|.|++|.||+..-. .+. .-..++||++.+ +++..+|+++.++.-|+|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688999999985211 011 123589999986 567789999999999999999999875
Q ss_pred CC--------CceEEEEEEeCCCcCCCC----CCCCCcccEEEEEEcccccCCC-EEeeeEee
Q 045058 656 DP--------ATVLTVGVFDNSQLGEKS----NGNKDLKIGKVRIRISTLETGR-IYTHSYPL 705 (1005)
Q Consensus 656 ~~--------~~~l~i~v~d~~~~~~~~----~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 705 (1005)
.. ...+.++||..+.-+... ...+|-.||.+.||+.+|...+ ..+.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 358999999887544110 2446778999999999976654 67899985
No 239
>PLN02352 phospholipase D epsilon
Probab=98.23 E-value=6.5e-06 Score=96.89 Aligned_cols=116 Identities=15% Similarity=0.211 Sum_probs=88.3
Q ss_pred cEEEEEEEEeecCCCC----CC-CCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 4 LKLGVQVVGAHNLLPK----DG-KGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~----d~-~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
|.|.++|.+|+-+... +. ....||||.|.+++. ..|| .+.-||+|||+|.+.+...- ...|.|.|.|
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~vk~- 82 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITLKT- 82 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEEec-
Confidence 6799999999843221 11 112399999999886 5788 45669999999999985432 1368999988
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
+..+||.+.|++.++..+....+.|+++....++.....+|++++.|.+
T Consensus 83 -----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 131 (758)
T PLN02352 83 -----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRP 131 (758)
T ss_pred -----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEE
Confidence 2569999999999998876656789999887665432249999999988
No 240
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.18 E-value=1.7e-06 Score=102.09 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=88.9
Q ss_pred eeEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----eeeeeeecCCCCCeeeeEEEEe---ecCCCCcEEEEEEEeC
Q 045058 269 MYFLYVRVVKARELPAMDLTGSIDPFVEVKIGNY-----KGITKHYEKNQNPQWHQVFAFS---RDRMQASVLEVVIKDK 340 (1005)
Q Consensus 269 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-----~~kT~~~~~~~nP~wne~f~f~---~~~~~~~~l~v~V~d~ 340 (1005)
.+.|.|.|..+++|+-..-+..+||||+.++.+. +.||+++++|.||.|||...+. ...+....|.++||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 5899999999999977666778999999999863 4689999999999999998875 4556667899999999
Q ss_pred C-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecC
Q 045058 341 D-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDK 378 (1005)
Q Consensus 341 ~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 378 (1005)
+ ...+.+||.+.|+|.++... .....||+|...
T Consensus 1603 ~~~~en~~lg~v~i~L~~~~l~-----kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLL-----KESVGWYNLGAC 1636 (1639)
T ss_pred cceeeeeeeeeeecchhhcchh-----hhhcceeecccc
Confidence 8 77899999999999998875 234589998653
No 241
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.18 E-value=1.5e-06 Score=102.49 Aligned_cols=109 Identities=23% Similarity=0.263 Sum_probs=89.5
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-----eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-----QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
++.|.|-|+-|++|..-..+..+||||+.++-- .|.||+++++|.||.|||.+.+.-...+.++...|.+.||..
T Consensus 1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence 578999999999996544455789999999843 278999999999999999999984333446678999999998
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 113 (1005)
.+...+.|||.+.|+|..+....+.. .||+|...
T Consensus 1603 -~~~~en~~lg~v~i~L~~~~l~kE~~-~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1603 -GGLLENVFLGGVNIPLLKVDLLKESV-GWYNLGAC 1636 (1639)
T ss_pred -cceeeeeeeeeeecchhhcchhhhhc-ceeecccc
Confidence 46678999999999999987666543 69999764
No 242
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=98.14 E-value=0.00048 Score=74.83 Aligned_cols=245 Identities=16% Similarity=0.217 Sum_probs=158.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeec-------CCCCcEEEEEEEeCC--C
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRD-------RMQASVLEVVIKDKD--L 342 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~-------~~~~~~l~v~V~d~~--~ 342 (1005)
+.|+|++|++++... .-.-.+..++++....|..+..+..|.||..+.+.++ ..+..+|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 578999999998763 2356888999999999999999999999999998754 345678999999987 5
Q ss_pred CCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCC--CCccceEEEEEEEEeccCCcccccc--cCCCCCCCCCC---
Q 045058 343 VKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKK--GEKIKGELMLAVWIGTQADEAFSDA--WHSDAATPVDS--- 415 (1005)
Q Consensus 343 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~G~i~l~~~~~~~~d~~~~~~--~~~~~~~~~~~--- 415 (1005)
+..+.+|.+.++|+..............+||+|-..+ -.+.+-+|.+.+............. .... ..|...
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~-~~p~~~~~~ 157 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAK-PAPPRQGHV 157 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCcccccccc-CCCcccCCC
Confidence 6789999999999988222222235678999998873 3335678888887765432110000 0000 001000
Q ss_pred -----------------CCccccccccccccCCceEEEEEEEEEeeeCCCCC----CC--CCCCcEEEEEECCeEEeeec
Q 045058 416 -----------------TPAITAVIRSKVYHSPRLWYVRVNVVEAQDLVPTE----KN--HFPDVYVKAQIGNQVLKTKI 472 (1005)
Q Consensus 416 -----------------~~~~~~~~r~~~~~~~~~~~L~V~v~~a~~L~~~d----~~--~~~dpyv~v~lg~~~~kT~~ 472 (1005)
..+++..+.+.- .......|.|++..|+||...- .. +....|....+-+....|..
T Consensus 158 ~~~~~~~~~~~l~~~l~~~eg~lQIGp~~-~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~ 236 (340)
T PF12416_consen 158 PPPNSLLSPATLIPVLLEDEGLLQIGPPD-LCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEP 236 (340)
T ss_pred cccccccCccceeEEEccCCceEeeCCch-hcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeee
Confidence 011111111111 1224678999999999998762 11 23566777777555555555
Q ss_pred ccCCCCCccc--ccEEEEEeeCC---------CCCeEEEEEEeccCCCCCceeEEEEEcccccccc
Q 045058 473 CQARTLSAVW--NEDLLFVAAEP---------FEDHLVLTVEDRVGPGKDEIIGRVIIPLSAIEKR 527 (1005)
Q Consensus 473 ~~~~t~~P~w--~e~f~f~v~~~---------~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~ 527 (1005)
-. ...+|.| ++...+.+... ....|.|.++- .+..||.+.|++..+...
T Consensus 237 F~-~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~Ll~~ 296 (340)
T PF12416_consen 237 FK-SLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQPLLPK 296 (340)
T ss_pred cc-ccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhhccCC
Confidence 53 6667765 33333544321 23356666665 367899999999998754
No 243
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.99 E-value=1.1e-05 Score=72.16 Aligned_cols=105 Identities=18% Similarity=0.254 Sum_probs=78.9
Q ss_pred EEEEEEEeecCCCC-------C--C----CCCCCcEEEEEE----CCeEeeccccCCCCCCceeeEEEEEec------cC
Q 045058 6 LGVQVVGAHNLLPK-------D--G----KGSSSAFVELYF----DGQRFRTTIKENDLNPVWNESFYFNIS------DA 62 (1005)
Q Consensus 6 l~V~v~~a~~L~~~-------d--~----~g~~dpyv~v~~----~~~~~~T~v~~~t~nP~Wne~f~f~v~------~~ 62 (1005)
|.|.|+.|.||+.. + . .-..|+||++.+ +++..+|+++.++..|.||.+++|.++ ..
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999532 1 1 123699999995 456899999999999999999999975 11
Q ss_pred c------cccceEEEEEEEeCCCC---------CCCCcccEEEEEeCCcccCCCCceeeeEec
Q 045058 63 S------KLHYLTLEAYIYNNIGD---------TNSRSFLGKVCLTGNSFVPLSDSVVLHYPL 110 (1005)
Q Consensus 63 ~------~~~~~~l~v~V~d~~~~---------~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L 110 (1005)
+ .++...+.|+||+.... ..+|-.||.+.||+.+|.........||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 14567899999997422 235679999999999997766555679985
No 244
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.87 E-value=0.0054 Score=66.84 Aligned_cols=239 Identities=15% Similarity=0.185 Sum_probs=155.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCcEEEEEECCeEEeeecccCCCCCcccccEEEEEeeCC-------CCCeEEEEEEecc-C
Q 045058 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAEP-------FEDHLVLTVEDRV-G 507 (1005)
Q Consensus 436 L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~t~~P~w~e~f~f~v~~~-------~~~~l~i~V~d~d-~ 507 (1005)
+.|.|++|++.+... .-.-.|..++.++...|..+. .+..|.||..+.+.+... +...|++++|..| .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999998662 246678999999999999886 899999999999987432 4558999999988 5
Q ss_pred CCCCceeEEEEEccccc-ccccccccccceeEEccCCCccccccccccccccceeEEEeecCCccccCCCc---------
Q 045058 508 PGKDEIIGRVIIPLSAI-EKRADERIIHSRWFNLEKPVAVDVDQLKKEKFSSRIHLRVCLDGGYHVLDEST--------- 577 (1005)
Q Consensus 508 ~~~d~~iG~~~i~l~~l-~~~~~~~~~~~~w~~L~~~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~--------- 577 (1005)
.+..+.||.+.++|+.. .....+.....+||+|-+...... ++...+.+.++++..........
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~------~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p 151 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYK------KHKPELLLSLSIEDDSKPQTPDFESFKAKPAP 151 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEccccccccc------cCCccEEEEEEEeccccccCCccccccccCCC
Confidence 67888999999999888 112222346789999988743211 22345666666654332211100
Q ss_pred cccC-------CCcc-----cc---c---ccC----CCcceEEEEEEEEecCCCCCCCCC---CCCCCCcEEEEEECCEE
Q 045058 578 HYSS-------DLRP-----TA---K---QLW----RPSIGILELGILNAVGLHPMKTRD---GRGTSDTYCVAKYGHKW 632 (1005)
Q Consensus 578 ~~~~-------d~~~-----~~---~---~~~----~~~~g~l~v~i~~a~~L~~~~~~~---~~~~~dpyv~~~~g~~~ 632 (1005)
.... .+.+ -. . ++- ....-.|.|+|-.|++|..+.... ..+.+.-|....+=+..
T Consensus 152 ~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~ 231 (340)
T PF12416_consen 152 PRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGND 231 (340)
T ss_pred cccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcE
Confidence 0000 0000 00 0 000 123568999999999998762111 11234556666664446
Q ss_pred EEeeeccCCCCceec--cEEEEEEeC----------CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccC
Q 045058 633 VRTRTLVDNLSPKYN--EQYTWEVFD----------PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET 695 (1005)
Q Consensus 633 ~~T~~~~~t~nP~wn--e~f~~~v~~----------~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 695 (1005)
+.|.......+|.+- +.-.+.+.. ....|.|.++-. +..||.+.|++..+..
T Consensus 232 Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 232 VTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred eEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----------CcEEEEEEEEhhhccC
Confidence 777777777788653 333366542 135788888764 5789999999999753
No 245
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=97.64 E-value=3.4e-05 Score=81.97 Aligned_cols=125 Identities=22% Similarity=0.289 Sum_probs=95.8
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE---C--CeEeeccccCCCCCCceeeEEEEEeccCcc--------ccceEE
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYF---D--GQRFRTTIKENDLNPVWNESFYFNISDASK--------LHYLTL 70 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~---~--~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~--------~~~~~l 70 (1005)
..|++.|+++.+++...+..-.|-||.+.+ + .++.+|.++++|.+|.|+|.|.+.+..... +....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 456788888888876544444688999886 2 347888899999999999999999865221 244678
Q ss_pred EEEEEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 71 EAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 71 ~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
.|++|++.....+|.++|.+.+.|.-|....+.. ..|+|.+.. ..+.|.+.+++.+..
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~-e~~~l~DGR--K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEIC-EYLPLKDGR--KAVGGKLEVKVRIRQ 504 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchh-hceeccccc--cccCCeeEEEEEEec
Confidence 9999999877888999999999998886655432 358886543 267899999998765
No 246
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.53 E-value=9.5e-05 Score=61.26 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=70.3
Q ss_pred EEEEEEeecCCCCCCCC-CCCcEEE--EEECC-eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 7 GVQVVGAHNLLPKDGKG-SSSAFVE--LYFDG-QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 7 ~V~v~~a~~L~~~d~~g-~~dpyv~--v~~~~-~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
=++|+.|++|---...| ...-|++ +.+.+ ...||+++++..||+|+|+|.|.+... .++...|.|.|+++ ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~-qL~~V~L~fsv~~~---~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQ-NLQTVRLVFKIQTQ---TP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHh-hccceEEEEEeecc---CC
Confidence 37899999996433222 2333444 22333 368999999999999999999998654 36778899999995 24
Q ss_pred CCcccEEEEEeCCcccCCCCceeeeEe
Q 045058 83 SRSFLGKVCLTGNSFVPLSDSVVLHYP 109 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~ 109 (1005)
+.+.||.|.+.++++-.... ..|.+
T Consensus 78 RKe~iG~~sL~l~s~geeE~--~HW~e 102 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQET--DHWLE 102 (103)
T ss_pred ccceeeEEEeecccCCHHHh--hhhhc
Confidence 88999999999988755433 34654
No 247
>PLN02964 phosphatidylserine decarboxylase
Probab=97.47 E-value=0.00018 Score=84.49 Aligned_cols=88 Identities=22% Similarity=0.311 Sum_probs=74.1
Q ss_pred cceEEEEEEEEecCCCCCCCCCCCCCCCcEEE-EEECCEEEEeeeccCCCCceeccEEEEEEeC-CCceEEEEEEeCCCc
Q 045058 594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCV-AKYGHKWVRTRTLVDNLSPKYNEQYTWEVFD-PATVLTVGVFDNSQL 671 (1005)
Q Consensus 594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~-~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~-~~~~l~i~v~d~~~~ 671 (1005)
-.|.+.+++++|+ |+ ..|+|+. +.+|.+.+||.+.++|+||+||+...|.|.. .....++.|||.+.+
T Consensus 52 ~~~~~~~~~~~~~----~~------~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (644)
T PLN02964 52 FSGIALLTLVGAE----MK------FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL 121 (644)
T ss_pred ccCeEEEEeehhh----hc------cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC
Confidence 3599999999998 32 2488876 5679999999999999999999999999975 233469999999988
Q ss_pred CCCCCCCCCcccEEEEEEcccccCCC
Q 045058 672 GEKSNGNKDLKIGKVRIRISTLETGR 697 (1005)
Q Consensus 672 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 697 (1005)
+ +++.+|.++++|.++...+
T Consensus 122 s------~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 122 S------KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred C------HHHhhhheeecHhhccHHH
Confidence 7 8999999999998877654
No 248
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.47 E-value=0.00015 Score=60.19 Aligned_cols=95 Identities=16% Similarity=0.327 Sum_probs=69.3
Q ss_pred EEEEEEeeeCCCCCC-CCCCCcEEEEEE---CCeEEeeecccCCCCCcccccEEEEEeeCC--CCCeEEEEEEeccCCCC
Q 045058 437 RVNVVEAQDLVPTEK-NHFPDVYVKAQI---GNQVLKTKICQARTLSAVWNEDLLFVAAEP--FEDHLVLTVEDRVGPGK 510 (1005)
Q Consensus 437 ~V~v~~a~~L~~~d~-~~~~dpyv~v~l---g~~~~kT~~~~~~t~~P~w~e~f~f~v~~~--~~~~l~i~V~d~d~~~~ 510 (1005)
-|+|+.|+||.-... +..+..||+--+ .....||.... ...||.|+|+|.|.+... ..-.|.++|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 478899999975443 334555666544 33566777775 899999999999988655 34467788887 4678
Q ss_pred CceeEEEEEcccccccccccccccceeEE
Q 045058 511 DEIIGRVIIPLSAIEKRADERIIHSRWFN 539 (1005)
Q Consensus 511 d~~iG~~~i~l~~l~~~~~~~~~~~~w~~ 539 (1005)
.+.||.|.++++++...+ ..+|..
T Consensus 79 Ke~iG~~sL~l~s~geeE-----~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQE-----TDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHHH-----hhhhhc
Confidence 999999999999887553 456653
No 249
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.00016 Score=76.54 Aligned_cols=107 Identities=21% Similarity=0.361 Sum_probs=85.1
Q ss_pred cEEEEEEEEeecCCCCCCCC-CCCcEEEEEEC--C---eEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 4 LKLGVQVVGAHNLLPKDGKG-SSSAFVELYFD--G---QRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g-~~dpyv~v~~~--~---~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
+.+.|.|+.|++|..+...+ .++|||+|++- + .+.+|+...+|+.|-+-+...|.- ..+...|.++||..
T Consensus 269 g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~----sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 269 GDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQ----SPPGKYLQGTVWGD 344 (405)
T ss_pred CceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhcc----CCCccEEEEEEecc
Confidence 78999999999998876543 68999999972 2 278999999999998888888874 34457999999975
Q ss_pred CCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCC
Q 045058 78 IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRG 114 (1005)
Q Consensus 78 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~ 114 (1005)
-..-..+.|+|.+.|-+.+|.........||+|.+.+
T Consensus 345 ygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 345 YGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 2222356899999999999977665556899998764
No 250
>PLN02964 phosphatidylserine decarboxylase
Probab=97.28 E-value=0.00038 Score=81.87 Aligned_cols=85 Identities=16% Similarity=0.295 Sum_probs=72.2
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcE-EEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCce
Q 045058 270 YFLYVRVVKARELPAMDLTGSIDPF-VEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDF 347 (1005)
Q Consensus 270 ~~L~V~v~~a~~L~~~~~~g~~dPy-v~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~ 347 (1005)
|++.+++++|+ ++. .||| +.+.+|.+.+||.+.++|.||+||+...|.+.........|.|||.+ +..+++
T Consensus 54 ~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~l 126 (644)
T PLN02964 54 GIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNTL 126 (644)
T ss_pred CeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHHh
Confidence 88999999997 332 3775 45678889999999999999999999999887766667899999999 889999
Q ss_pred eEEEEEEceecCCC
Q 045058 348 VGIVRFDINEVPLR 361 (1005)
Q Consensus 348 lG~~~i~l~~l~~~ 361 (1005)
+|.|.++|.++...
T Consensus 127 v~~~e~~~t~f~~k 140 (644)
T PLN02964 127 VGYCELDLFDFVTQ 140 (644)
T ss_pred hhheeecHhhccHH
Confidence 99999999877653
No 251
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.00039 Score=73.74 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=85.7
Q ss_pred cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-CCE----EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeC
Q 045058 594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-GHK----WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDN 668 (1005)
Q Consensus 594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-g~~----~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~ 668 (1005)
..|.|.|.|++|++|.... ..+..++|||+|++ ++. +.+|+...+|++|-+..+..|.-.-+...|.+.||-.
T Consensus 267 ~~g~l~vEii~ar~l~~k~--~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKP--GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccC--CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence 4689999999999999642 22336899999988 332 2588888999999888888888777788999999953
Q ss_pred CCcCCCCCCCCCcccEEEEEEcccccCCC-EEeeeEeeee
Q 045058 669 SQLGEKSNGNKDLKIGKVRIRISTLETGR-IYTHSYPLLV 707 (1005)
Q Consensus 669 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~ 707 (1005)
- + +...+.|+|.+.|-|.+|.... ....||+|..
T Consensus 345 y--g---Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 345 Y--G---RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred c--c---ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 2 1 3458899999999999998766 7789999973
No 252
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.45 E-value=0.0025 Score=68.27 Aligned_cols=118 Identities=19% Similarity=0.210 Sum_probs=87.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEC-----CeeeeeeeecCCCCCeeeeEEEEeecC---CC--------CcEEE
Q 045058 271 FLYVRVVKARELPAMDLTGSIDPFVEVKIG-----NYKGITKHYEKNQNPQWHQVFAFSRDR---MQ--------ASVLE 334 (1005)
Q Consensus 271 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~~~nP~wne~f~f~~~~---~~--------~~~l~ 334 (1005)
.|.+.|+++.+++........|-||++.+- .++.+|.+++.+.+|.|+|.|.+.+.. .. ...+.
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k 447 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK 447 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence 467778888887765433345778888763 256789999999999999999998765 21 24699
Q ss_pred EEEEeCC--CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEEEe
Q 045058 335 VVIKDKD--LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVWIG 394 (1005)
Q Consensus 335 v~V~d~~--~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~~~ 394 (1005)
|++|+.. +.+|.++|.|.+.|.-|... +.....++|.+... ..-|.+.+.+.+.
T Consensus 448 feifhkggf~rSdkl~gt~nikle~Len~-----cei~e~~~l~DGRK-~vGGkLevKvRiR 503 (523)
T KOG3837|consen 448 FEIFHKGGFNRSDKLTGTGNIKLEILENM-----CEICEYLPLKDGRK-AVGGKLEVKVRIR 503 (523)
T ss_pred EEEeeccccccccceeceeeeeehhhhcc-----cchhhceecccccc-ccCCeeEEEEEEe
Confidence 9999998 45799999999999988653 44555677776432 1568888888764
No 253
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.31 E-value=0.015 Score=68.13 Aligned_cols=112 Identities=23% Similarity=0.357 Sum_probs=78.1
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECC-------eEeeccc-cCCCCCCceee-EEEEE-eccCccccceEEEEE
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDG-------QRFRTTI-KENDLNPVWNE-SFYFN-ISDASKLHYLTLEAY 73 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~-------~~~~T~v-~~~t~nP~Wne-~f~f~-v~~~~~~~~~~l~v~ 73 (1005)
+.+.|+|+++.=|-.++ ...||+|.+-| ..+||++ ..|++||+||| .|.|. |.-++ -..|.|.
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe---LA~lRia 775 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE---LASLRIA 775 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc---hhheeee
Confidence 57899999999887665 34799999844 2477774 45789999985 47887 44344 2589999
Q ss_pred EEeCCCCCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 74 IYNNIGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 74 V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
||+. +.+|||+-.+++..+..+-. .+.|+..+...-.--.|.+.+.+.+
T Consensus 776 vyeE-----ggK~ig~RIlpvd~l~~GYr----hv~LRse~Nqpl~lp~Lfv~i~~kd 824 (1189)
T KOG1265|consen 776 VYEE-----GGKFIGQRILPVDGLNAGYR----HVCLRSESNQPLTLPALFVYIVLKD 824 (1189)
T ss_pred eecc-----CCceeeeeccchhcccCcce----eEEecCCCCCccccceeEEEEEeec
Confidence 9997 45799999999988876532 4566655443222344555554443
No 254
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.97 E-value=0.052 Score=52.69 Aligned_cols=107 Identities=19% Similarity=0.207 Sum_probs=71.0
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEe
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQR----FRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYN 76 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~----~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 76 (1005)
...++|+|++++++...+ .+|-||.+.+ +++. ..|+-+. ..++.|||...|++.-.+-.....|.|.||+
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence 357899999999987643 4688888864 5542 3454333 3679999999999754444456789999998
Q ss_pred CCCCCC---CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058 77 NIGDTN---SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT 130 (1005)
Q Consensus 77 ~~~~~~---~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 130 (1005)
.....+ ....||.+.++|-+.. + . -.+|...+.++..
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd~~--~-------~--------Lr~G~~~L~lW~~ 122 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFDYT--D-------T--------LVSGKMALNLWPV 122 (158)
T ss_pred EecccCCCCceEEEEEEEEEEECCC--C-------h--------hhCCCEEEEEEcC
Confidence 642111 2246888888854411 1 1 1268888888753
No 255
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.77 E-value=0.13 Score=49.18 Aligned_cols=125 Identities=16% Similarity=0.083 Sum_probs=85.7
Q ss_pred eeEEEEEEEEeecCCCCCC----CCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEeecCCC-------------Cc
Q 045058 269 MYFLYVRVVKARELPAMDL----TGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSRDRMQ-------------AS 331 (1005)
Q Consensus 269 ~~~L~V~v~~a~~L~~~~~----~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~~~~~-------------~~ 331 (1005)
..+|+++|..++-....-. ...+--++-+.+++|+++|+.+..+.+|.|+|.|.|.+.... .+
T Consensus 8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 3679999999886543211 122223555667899999999999999999999999865321 35
Q ss_pred EEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCC-c-cceEEEEEEEEecc
Q 045058 332 VLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGE-K-IKGELMLAVWIGTQ 396 (1005)
Q Consensus 332 ~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~-~~G~i~l~~~~~~~ 396 (1005)
+|++.|.--+ .+...++|...++.+.+..... .....-..|.+.... + ..|-+.+++...|.
T Consensus 88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~---~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGN---GSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred ceEEEEEEecCCCceEeeeeceehHHHHhccCC---CccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 7888888777 5556899999999998876422 111223455544333 2 67988888876653
No 256
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=95.59 E-value=0.084 Score=52.35 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=52.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
..++|+|+++.+|..+ ....+-||.+.+ +++ ...|+.+.-..++.|||.+.|++.-.+-.....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 5789999999999862 234666777653 554 24666555557799999999987544434567899999986
Q ss_pred C
Q 045058 78 I 78 (1005)
Q Consensus 78 ~ 78 (1005)
.
T Consensus 86 ~ 86 (173)
T cd08693 86 S 86 (173)
T ss_pred c
Confidence 3
No 257
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=95.24 E-value=0.085 Score=50.45 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHhcccchHHHHHH
Q 045058 797 RRSKANFFRLMTVFSGLFAVGKWFADICMWKNPITTVLVHVLYLMLACFPELILPTVFL 855 (1005)
Q Consensus 797 ~~~k~n~~rl~~~~~~~~~~~~~~~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l 855 (1005)
.+++.=..|++.++..+-..+..++.+++|++|..|.++++++++++.. .+++|+=.+
T Consensus 62 drlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv-ly~vP~r~l 119 (156)
T PF08372_consen 62 DRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV-LYFVPFRVL 119 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH-HHHhhHHHH
Confidence 3556667777788888888999999999999999999998777776543 334554333
No 258
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.20 E-value=0.069 Score=62.86 Aligned_cols=110 Identities=21% Similarity=0.291 Sum_probs=78.3
Q ss_pred cceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE-C------CEEEEeeecc-CCCCceecc-EEEEEEe--CCCceEE
Q 045058 594 SIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY-G------HKWVRTRTLV-DNLSPKYNE-QYTWEVF--DPATVLT 662 (1005)
Q Consensus 594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~-g------~~~~~T~~~~-~t~nP~wne-~f~~~v~--~~~~~l~ 662 (1005)
-.+.+.|+|+.++=|..++ .-.||.|.+ | .+.+||+++. +++||+|+| .|.|.-. ..-..|.
T Consensus 701 IA~t~sV~VISgqFLSdrk-------vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lR 773 (1189)
T KOG1265|consen 701 IAATLSVTVISGQFLSDRK-------VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLR 773 (1189)
T ss_pred EEeeEEEEEEeeeeccccc-------cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhhee
Confidence 3589999999999887432 347999987 3 1347999988 569999996 5777532 2357999
Q ss_pred EEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEE
Q 045058 663 VGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIR 724 (1005)
Q Consensus 663 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~ 724 (1005)
|.||++ ...+||.-.+|+..|..|- +..-|.+....-... -.|.+.+.
T Consensus 774 iavyeE----------ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl~l-p~Lfv~i~ 821 (1189)
T KOG1265|consen 774 IAVYEE----------GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPLTL-PALFVYIV 821 (1189)
T ss_pred eeeecc----------CCceeeeeccchhcccCcc---eeEEecCCCCCcccc-ceeEEEEE
Confidence 999998 5689999999999999986 445565443332222 34444444
No 259
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=95.13 E-value=0.044 Score=56.73 Aligned_cols=116 Identities=18% Similarity=0.155 Sum_probs=78.0
Q ss_pred CcEEEEEEEEeecCCCCCC--CCCCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCC
Q 045058 3 NLKLGVQVVGAHNLLPKDG--KGSSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIG 79 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~--~g~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 79 (1005)
.|.|.++++.+|||.-... +-+-+-||++.++.+ +.||.+.....-=.|.|+|..++.+.+ .+.+-||.++.
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~~-----vl~~lvySW~p 124 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNIE-----VLHYLVYSWPP 124 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccce-----eeeEEEeecCc
Confidence 4789999999999975433 345689999999876 788888877777789999999987654 78889998854
Q ss_pred CCCCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 80 DTNSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 80 ~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
.. ++++.-.-.+.+..+...+.....-+.|++ +|.+.+.+.+.+
T Consensus 125 q~-RHKLC~~g~l~~~~v~rqspd~~~Al~leP-------rgq~~~r~~~~D 168 (442)
T KOG1452|consen 125 QR-RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-------RGQPPLRLPLAD 168 (442)
T ss_pred hh-hccccccchhhhhhhhhcCCcceeeeeccc-------CCCCceecccCC
Confidence 33 444432223343333333322112244543 577888876655
No 260
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.00 E-value=0.33 Score=46.47 Aligned_cols=126 Identities=13% Similarity=0.185 Sum_probs=83.5
Q ss_pred cceEEEEEEEEecCCCCCCCCCCCCCCCc--EEEEEECCEEEEeeeccCCCCceeccEEEEEEeCC--------------
Q 045058 594 SIGILELGILNAVGLHPMKTRDGRGTSDT--YCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDP-------------- 657 (1005)
Q Consensus 594 ~~g~l~v~i~~a~~L~~~~~~~~~~~~dp--yv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~-------------- 657 (1005)
..-.|.++|++++-..--- .+..+..+. ++-+.+++++++|+.+.-+.+|.|+|.|-|++...
T Consensus 7 ~~~yL~l~vlgGkAFld~l-~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~ 85 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHL-QEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSI 85 (156)
T ss_pred CceEEEEEEeCchhHhhhh-hccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcC
Confidence 3456888888888554210 011133333 34456699999999999999999999999988532
Q ss_pred CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCCCEE--eeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058 658 ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETGRIY--THSYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 658 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
++.|++-|.-.|..+ ...++|.-.+.-..+...... .....|...........|.|++++..-
T Consensus 86 ~~pihivli~~d~~~------~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELl 150 (156)
T PF15627_consen 86 SDPIHIVLIRTDPSG------ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELL 150 (156)
T ss_pred CCceEEEEEEecCCC------ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEee
Confidence 357888888877543 458899989888776543321 334445433333222469999998863
No 261
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=94.70 E-value=0.18 Score=49.35 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=70.9
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
..++|+|++..++...+ ....+-||.+.+ +++ ...|.......++.|||...|++.-.+-.....|.|.||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 46889999998886511 224566777654 554 23444444447899999999997544444567899999997
Q ss_pred CCCC-CCCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058 78 IGDT-NSRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYIT 130 (1005)
Q Consensus 78 ~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 130 (1005)
.... ..+..||.+.++|-+.. + . -.+|...+.++-.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~~--~-------~--------L~~G~~~l~lW~~ 123 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDYK--G-------K--------LRQGMITLNLWPG 123 (156)
T ss_pred ecCCCCcceEEEEEeEEeEccc--C-------c--------EecCCEEEeccCC
Confidence 4322 14678999998854421 1 0 2368888888643
No 262
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.32 E-value=0.89 Score=43.64 Aligned_cols=120 Identities=16% Similarity=0.282 Sum_probs=78.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeE---eeccc-cCCCCCCceeeEEEEEecc----C-ccccceEEEEEE
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQR---FRTTI-KENDLNPVWNESFYFNISD----A-SKLHYLTLEAYI 74 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~---~~T~v-~~~t~nP~Wne~f~f~v~~----~-~~~~~~~l~v~V 74 (1005)
..+.|+|++..+++. ....-||....++.. .+|.. ....-.-.|||.|.+.+.- . ..++...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467899999999876 223445555444442 44442 2234457899999998631 1 125677899999
Q ss_pred EeCCCCCCCCcccEEEEEeCCcccCCC-CceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 75 YNNIGDTNSRSFLGKVCLTGNSFVPLS-DSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
+..... +....||.+.|.|+++.... ......++|.+.. .....+.+++.+..
T Consensus 83 ~~~~~~-~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~---~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 83 FEVDGS-GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCK---KSNATLSISISLSE 136 (143)
T ss_pred EEecCC-CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC---CCCcEEEEEEEEEE
Confidence 986322 22369999999999987754 3333458887652 33567777777655
No 263
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.25 E-value=0.26 Score=48.84 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=61.1
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCcccccEEEEEee---CCCCCeEEEEEEec
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL----KTKICQARTLSAVWNEDLLFVAA---EPFEDHLVLTVEDR 505 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~~P~w~e~f~f~v~---~~~~~~l~i~V~d~ 505 (1005)
.++|+|+.+.+|.. .....+-||++.+ |++.. .|+.+. ....+.|||.+.|++. .|.+..|.|+||+.
T Consensus 9 ~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 58999999999975 2234567888766 66533 455443 3567999999999764 34677999999987
Q ss_pred cCCC----------------CCceeEEEEEccccc
Q 045058 506 VGPG----------------KDEIIGRVIIPLSAI 524 (1005)
Q Consensus 506 d~~~----------------~d~~iG~~~i~l~~l 524 (1005)
.... ....||.+.+.|-+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5321 246888888887653
No 264
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=93.80 E-value=0.41 Score=46.51 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=61.2
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCcccccEEEEEeeC---CCCCeEEEEEEec
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL----KTKICQARTLSAVWNEDLLFVAAE---PFEDHLVLTVEDR 505 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~~P~w~e~f~f~v~~---~~~~~l~i~V~d~ 505 (1005)
.++|+|+++.++... ...|-||++.+ |++.. .|+.+. ..++.|||-+.|++.- |.+..|.|+||+.
T Consensus 9 ~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 9 NLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 588999999998753 24688888877 65433 455443 3689999999997742 4677999999997
Q ss_pred cCCC----CCceeEEEEEccccc
Q 045058 506 VGPG----KDEIIGRVIIPLSAI 524 (1005)
Q Consensus 506 d~~~----~d~~iG~~~i~l~~l 524 (1005)
...+ ....+|.+.+.|-+.
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred ecccCCCCceEEEEEEEEEEECC
Confidence 5421 235699999988663
No 265
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=93.70 E-value=0.69 Score=39.38 Aligned_cols=83 Identities=20% Similarity=0.165 Sum_probs=56.7
Q ss_pred CCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCCc
Q 045058 25 SSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSDS 103 (1005)
Q Consensus 25 ~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~~ 103 (1005)
++-.+++.+++. ...|.-+. -.+..||+.|.|++... ..|+|.||-+|- ....|-.-+.|.+...
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdRs-----RELEI~VywrD~----RslCav~~lrLEd~~~---- 74 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELERS-----RELEIAVYWRDW----RSLCAVKFLKLEDERH---- 74 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeecc-----cEEEEEEEEecc----hhhhhheeeEhhhhcc----
Confidence 567899999874 67777553 36789999999998543 489999998742 4477777777777311
Q ss_pred eeeeEecccCCCcceeeeEEEEEEEE
Q 045058 104 VVLHYPLEKRGIFSHVRGELGLKVYI 129 (1005)
Q Consensus 104 ~~~w~~L~~~~~~~~~~G~i~l~~~~ 129 (1005)
....+|++ +|.+...+.|
T Consensus 75 -~~~~~lep-------qg~l~~ev~f 92 (98)
T cd08687 75 -EVQLDMEP-------QLCLVAELTF 92 (98)
T ss_pred -cceecccc-------ccEEEEEEEe
Confidence 13456654 4566655544
No 266
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.57 E-value=1.8 Score=41.49 Aligned_cols=114 Identities=23% Similarity=0.249 Sum_probs=76.8
Q ss_pred eEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEE---EEeeecc-CCCCceeccEEEEEEe---CC------CceEE
Q 045058 596 GILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKW---VRTRTLV-DNLSPKYNEQYTWEVF---DP------ATVLT 662 (1005)
Q Consensus 596 g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~---~~T~~~~-~t~nP~wne~f~~~v~---~~------~~~l~ 662 (1005)
-.+.|.|.+..+++. .....||+.+.|+.. ..|.... .+..-.||+.|.+++. +. ...+.
T Consensus 7 f~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 7 FQFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 467888999999884 223566666667653 4554433 4567899999999874 22 23688
Q ss_pred EEEEeCCCcCCCCCCCCCcccEEEEEEcccccCC--CEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058 663 VGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETG--RIYTHSYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 663 i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
|.|+....-+ +...||.+.|+|+++.+. ......++|... ......|++.+++.
T Consensus 80 ~~v~~~~~~~------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~ 135 (143)
T PF10358_consen 80 FSVFEVDGSG------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLS 135 (143)
T ss_pred EEEEEecCCC------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEE
Confidence 9999874211 226999999999998773 566778888632 12346777777764
No 267
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.25 E-value=0.56 Score=46.39 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=49.4
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe---EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ---RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~---~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
..++|+|+++..+.. +......-||++.+ +++ ..+|+.+.-+.++.|||.+.|++.-.+-.....|.|.||+.
T Consensus 10 ~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 10 RKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred CCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 468899999984432 22222345555533 444 23666666677899999999997655545567899999996
No 268
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=93.23 E-value=0.026 Score=56.17 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=18.3
Q ss_pred HHHHhHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCC
Q 045058 925 GDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRL 986 (1005)
Q Consensus 925 ~~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~~~ 986 (1005)
..++..+..++.++.|++|..|..++.+|++.+.+..+++...++.++.+.++-=|.+....
T Consensus 91 ~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~ 152 (169)
T PF02453_consen 91 EWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKY 152 (169)
T ss_dssp CCCCHHHHHHHCCCHCT-TTGGG---------------------------------------
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHH
Confidence 45555688889999999999999999999888888888887776666555444445444433
No 269
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=92.98 E-value=0.57 Score=45.81 Aligned_cols=88 Identities=27% Similarity=0.380 Sum_probs=60.5
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeE----EeeecccCCCCCcccccEEEEEee---CCCCCeEEEEEEec
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQV----LKTKICQARTLSAVWNEDLLFVAA---EPFEDHLVLTVEDR 505 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~----~kT~~~~~~t~~P~w~e~f~f~v~---~~~~~~l~i~V~d~ 505 (1005)
.++|.+....++... .....+-||++.+ |++. ..|+... ...++.|||.+.|++. -|.+..|.|+||+.
T Consensus 9 ~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 9 NLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCc-CCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 477888887777541 1234577777766 5542 2333332 3368999999999763 34677999999998
Q ss_pred cCCC--CCceeEEEEEccccc
Q 045058 506 VGPG--KDEIIGRVIIPLSAI 524 (1005)
Q Consensus 506 d~~~--~d~~iG~~~i~l~~l 524 (1005)
+..+ .+..||.+.++|-+.
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 6543 568999999998664
No 270
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.93 E-value=0.5 Score=46.06 Aligned_cols=91 Identities=23% Similarity=0.218 Sum_probs=63.1
Q ss_pred CCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEEEEEeCCc
Q 045058 23 GSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNS 96 (1005)
Q Consensus 23 g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~ 96 (1005)
..+|-||.+.+ +++ ...|+.+.-+..+.|||...|++.-.+-.....|.|.||+... .+....+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~-~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG-TGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecC-CCCceEEEEEEEeeEC
Confidence 35788888865 444 2466666656778999999999865544456789999999743 3356789999888544
Q ss_pred ccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 97 FVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 97 l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
- .+ . -.+|...+.++...
T Consensus 107 ~--~g-------~--------Lr~G~~~l~lw~~~ 124 (159)
T cd08397 107 K--DG-------T--------LRRGRQKLRVWPDV 124 (159)
T ss_pred C--CC-------c--------EecCCEEEEEEeCC
Confidence 2 11 0 23688889987555
No 271
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.69 E-value=0.24 Score=51.49 Aligned_cols=129 Identities=20% Similarity=0.235 Sum_probs=80.6
Q ss_pred CcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCc
Q 045058 593 PSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQL 671 (1005)
Q Consensus 593 ~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~ 671 (1005)
...|.|.+.+++++||.-... ..+-.-+-||++....+ ..||.+......-.|.|.|..++... .++.+-||.|+.-
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~pq 125 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPPQ 125 (442)
T ss_pred cccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCch
Confidence 346999999999999985321 11334599999999765 45666666666778999999987753 4778888888632
Q ss_pred CCCCCCCCCc--ccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeeccchhhhhccCCCCCC
Q 045058 672 GEKSNGNKDL--KIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLP 743 (1005)
Q Consensus 672 ~~~~~~~~d~--~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~p 743 (1005)
. .++ .+| .|.+..+.+... .+-+.|. ...+|++.+++.+ .++.+.|-+..+|
T Consensus 126 ~------RHKLC~~g--~l~~~~v~rqsp-d~~~Al~------lePrgq~~~r~~~-----~Dp~av~rR~~~P 179 (442)
T KOG1452|consen 126 R------RHKLCHLG--LLEAFVVDRQSP-DRVVALY------LEPRGQPPLRLPL-----ADPEAVTRRTVNP 179 (442)
T ss_pred h------hccccccc--hhhhhhhhhcCC-cceeeee------cccCCCCceeccc-----CChHHHhhcccCc
Confidence 2 222 245 333333332221 2334443 2335888888876 3455555555555
No 272
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.63 E-value=0.45 Score=47.20 Aligned_cols=112 Identities=20% Similarity=0.168 Sum_probs=72.1
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCeE----eeccccC----CCCCCceeeEEEEEeccCccccceEEEE
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQR----FRTTIKE----NDLNPVWNESFYFNISDASKLHYLTLEA 72 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~~----~~T~v~~----~t~nP~Wne~f~f~v~~~~~~~~~~l~v 72 (1005)
...+.|+|.++.+++........|-||.+.+ +++. ..|+... -...+.|||...|++.-.+-.....|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3578899999999987665556788888764 5542 3444221 1235789999999975433344578999
Q ss_pred EEEeCCCCCC--------CCcccEEEEEeCCcccCCCCceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 73 YIYNNIGDTN--------SRSFLGKVCLTGNSFVPLSDSVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 73 ~V~d~~~~~~--------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
.+|+...... .+..||.+.++|-+.. + . -.+|...+.++...
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~--~-------~--------L~~G~~~L~lW~~~ 136 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR--G-------V--------LRQGSLLLGLWPPS 136 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcch--h-------h--------hccCCEEEEeccCC
Confidence 9998633211 3467887777744310 0 0 23688888887433
No 273
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=92.03 E-value=0.57 Score=45.69 Aligned_cols=70 Identities=26% Similarity=0.317 Sum_probs=51.8
Q ss_pred CCCcEEEEEE--CCeEE----eeecccCCCCCcccccEEEEEeeC---CCCCeEEEEEEeccCCCCCceeEEEEEccccc
Q 045058 454 FPDVYVKAQI--GNQVL----KTKICQARTLSAVWNEDLLFVAAE---PFEDHLVLTVEDRVGPGKDEIIGRVIIPLSAI 524 (1005)
Q Consensus 454 ~~dpyv~v~l--g~~~~----kT~~~~~~t~~P~w~e~f~f~v~~---~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l 524 (1005)
.++-||++.+ |++.. .|+... -+..+.|||.+.|++.- |.+..|.|+|||.+..++...+|.+.++|-+.
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4677888876 55432 454443 45678899999998743 46779999999987665678999999998654
No 274
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.35 E-value=0.83 Score=45.35 Aligned_cols=90 Identities=29% Similarity=0.417 Sum_probs=64.4
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE----eeeccc---CCCCCcccccEEEEEee---CCCCCeEEEEE
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL----KTKICQ---ARTLSAVWNEDLLFVAA---EPFEDHLVLTV 502 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~---~~t~~P~w~e~f~f~v~---~~~~~~l~i~V 502 (1005)
.++|+|..+.+++........+-||++.+ |++.. .|+... .-...+.|||.+.|++. .|.+..|.|++
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 68899999999988765556788988877 66533 333221 11235779999999763 34677999999
Q ss_pred EeccCCC---------CCceeEEEEEccccc
Q 045058 503 EDRVGPG---------KDEIIGRVIIPLSAI 524 (1005)
Q Consensus 503 ~d~d~~~---------~d~~iG~~~i~l~~l 524 (1005)
|+....+ .+..||.+.++|-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9976543 457899999988664
No 275
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.13 E-value=1.8 Score=42.94 Aligned_cols=70 Identities=29% Similarity=0.285 Sum_probs=45.7
Q ss_pred EEEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE---eeecccCCCCCcccccEEEEEeeC---CCCCeEEEEEEecc
Q 045058 435 YVRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL---KTKICQARTLSAVWNEDLLFVAAE---PFEDHLVLTVEDRV 506 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~---kT~~~~~~t~~P~w~e~f~f~v~~---~~~~~l~i~V~d~d 506 (1005)
.++|+|.++. .+..+......-||++.+ |++.. +|.... -+.++.|||-+.|++.- |....|.|+||+..
T Consensus 11 ~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 11 KFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4677888776 333333333456777655 55432 455443 45679999999998743 36679999999963
No 276
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=89.99 E-value=4.9 Score=40.10 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=33.4
Q ss_pred EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 37 RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 37 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.++|.|...+.+|.|||++.+.++-. ......|.|++++.
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~-~~~~~HL~FtfrH~ 93 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPID-KFRGSHLRFEFRHC 93 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChh-hCCCeeEEEEEEEe
Confidence 57888999999999999999998653 35667899988885
No 277
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=89.09 E-value=2.1 Score=38.12 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=50.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEE--CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYF--DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~--~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.+.+.+...++.........++-||.+.+ +++ ...|+.+.-...+.|||...|++.-.+-.....|.|.+|+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 36677888887765543333578888864 554 23566555556689999999987544444567899999986
No 278
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=86.99 E-value=3.1 Score=41.59 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=33.5
Q ss_pred EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 37 RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 37 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
.++|.|.....+|.|||++.+.++-. ......|.|++++.
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~-~~~~~HL~FtfrH~ 93 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIE-DFKSSHLRFTFKHR 93 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChh-hCCCeEEEEEEEee
Confidence 57888989999999999999998653 35667899999885
No 279
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=85.57 E-value=3.1 Score=39.89 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=47.7
Q ss_pred eccccCCC-CCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC----cccEEEEEeCCcccCCCCceeeeEecccC
Q 045058 39 RTTIKEND-LNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR----SFLGKVCLTGNSFVPLSDSVVLHYPLEKR 113 (1005)
Q Consensus 39 ~T~v~~~t-~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~w~~L~~~ 113 (1005)
.|+...-+ .++.|||.+.|++.=.+-.....|.|.||+.+... .+ ..||.+.++|-+. .+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-~~~~~~~~lgw~n~~lFd~--~~~----------- 88 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-KSKKKKVPLGWVNLPLFDY--RGQ----------- 88 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-TT--EEEEEEEEEEESB-T--TSB-----------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-ccccceeEEEEEEEEeECC--CCc-----------
Confidence 56655555 79999999999975444345678999999874332 33 6899988885442 111
Q ss_pred CCcceeeeEEEEEEEEec
Q 045058 114 GIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 114 ~~~~~~~G~i~l~~~~~~ 131 (1005)
-.+|...+.++-..
T Consensus 89 ----L~~G~~~L~lW~~~ 102 (142)
T PF00792_consen 89 ----LRQGPQKLSLWPDE 102 (142)
T ss_dssp ----BEEEEEEEE-EET-
T ss_pred ----ccCCCEEEEEEcCC
Confidence 23699999995433
No 280
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=84.50 E-value=5.3 Score=35.56 Aligned_cols=70 Identities=24% Similarity=0.348 Sum_probs=46.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCcEEEEEE--CCeEE----eeecccCCCCCcccccEEEEEee---CCCCCeEEEEEEecc
Q 045058 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQI--GNQVL----KTKICQARTLSAVWNEDLLFVAA---EPFEDHLVLTVEDRV 506 (1005)
Q Consensus 436 L~V~v~~a~~L~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~t~~P~w~e~f~f~v~---~~~~~~l~i~V~d~d 506 (1005)
+.+.+..+.+.........++-||++.+ |++.. .|+.+. -...+.|||.+.|++. .|.+..|.|++|+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 4566666666655443333588888877 65433 444442 4556899999999764 346779999999864
No 281
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=83.09 E-value=15 Score=31.57 Aligned_cols=63 Identities=19% Similarity=0.356 Sum_probs=45.0
Q ss_pred CCcEEEEEECCe-eeeeeeecCCCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceec
Q 045058 291 IDPFVEVKIGNY-KGITKHYEKNQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEV 358 (1005)
Q Consensus 291 ~dPyv~v~~~~~-~~kT~~~~~~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l 358 (1005)
++-.+.+++.+. ..+|.- +.-.+..|++.|.+.++. +..|+|.||-+|. ..+-|...+.|.+.
T Consensus 9 ~eV~avLklDn~~VgqT~W-k~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQW-KPKSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccc-cccccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhh
Confidence 567888898884 456653 334688999999998876 4579999988763 23455566677764
No 282
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=82.43 E-value=4 Score=41.05 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=32.3
Q ss_pred EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCC--cccEEEEEeCC
Q 045058 37 RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSR--SFLGKVCLTGN 95 (1005)
Q Consensus 37 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d--~~lG~~~i~l~ 95 (1005)
.+.|.+..++.+|.|+|+|.+.++... .....|.|++++.....+++ ..+|-+.++|-
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l-~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~ 119 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDL-FPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLM 119 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCC-CTTEEEEEEEEE---SSSS-SS-EEEEEEEESB
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchh-cccEEEEEEEEeeccccccCccceeEEEEEEee
Confidence 367778889999999999999996432 45578999999863222122 56676655543
No 283
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=81.93 E-value=11 Score=35.95 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=38.5
Q ss_pred EeeeccCC-CCceeccEEEEEEe--C-C-CceEEEEEEeCCCcCCCCCCCCC----cccEEEEEEcccc
Q 045058 634 RTRTLVDN-LSPKYNEQYTWEVF--D-P-ATVLTVGVFDNSQLGEKSNGNKD----LKIGKVRIRISTL 693 (1005)
Q Consensus 634 ~T~~~~~t-~nP~wne~f~~~v~--~-~-~~~l~i~v~d~~~~~~~~~~~~d----~~lG~~~i~l~~l 693 (1005)
.|+.+.-+ .++.|||.++|++. + | .+.|.|+||+.+... .. ..||.+.++|=+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~------~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK------KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST------TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC------ccccceeEEEEEEEEeECC
Confidence 55555555 79999999999875 4 3 679999999876432 22 6899999998664
No 284
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=80.59 E-value=5.3 Score=35.98 Aligned_cols=98 Identities=12% Similarity=0.053 Sum_probs=54.0
Q ss_pred EEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCcc----ccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCC
Q 045058 28 FVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASK----LHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSD 102 (1005)
Q Consensus 28 yv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~----~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~ 102 (1005)
||.+.+-.. .+.|.++. +.+|.+|-+-.|.|...+. ++...+.++++.. .+...+.||.+.|++..+.....
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa--~g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQA--LGSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE---SS-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEee--ccCCeEEEEEEEeechhhhcCCC
Confidence 677776554 56777775 8999999998888854332 4667899999885 24457899999999999864433
Q ss_pred -ceeeeEecccCCCcceeeeEEEEEEEEe
Q 045058 103 -SVVLHYPLEKRGIFSHVRGELGLKVYIT 130 (1005)
Q Consensus 103 -~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 130 (1005)
.......|.+.++ ..-|.+...+.+.
T Consensus 79 ~~i~~~~~l~g~~~--~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 ERIHGSATLVGVSG--EDFGTLEYWIRLR 105 (107)
T ss_dssp --EEEEEEE-BSSS---TSEEEEEEEEEE
T ss_pred ceEEEEEEEeccCC--CeEEEEEEEEEec
Confidence 3334466765544 3678888877654
No 285
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=80.53 E-value=15 Score=36.77 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=39.3
Q ss_pred eeeeeeecCCCCCeeeeEEEEee--cCCCCcEEEEEEEeCCC--CCC---ceeEEEEEEce
Q 045058 303 KGITKHYEKNQNPQWHQVFAFSR--DRMQASVLEVVIKDKDL--VKD---DFVGIVRFDIN 356 (1005)
Q Consensus 303 ~~kT~~~~~~~nP~wne~f~f~~--~~~~~~~l~v~V~d~~~--~~d---~~lG~~~i~l~ 356 (1005)
.++|.+...+.+|.|+|++.+.+ +......|.|++++... .+| ..+|.+-++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 57888889999999999998875 44566789999988641 222 45666666653
No 286
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=80.37 E-value=6.6 Score=39.52 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=34.9
Q ss_pred EEEeeeccCCCCceeccEEEEEEeC---CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEccc
Q 045058 632 WVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRIST 692 (1005)
Q Consensus 632 ~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 692 (1005)
.+.|.+.+++.+|.|+|+|.+.++. +...|.+++++-..-. ...++..+|.+.+||.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~---~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE---SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS---SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc---ccCccceeEEEEEEeee
Confidence 4688888899999999999999975 3568999999876422 11122789999999977
No 287
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=80.33 E-value=1.8 Score=52.24 Aligned_cols=104 Identities=15% Similarity=0.152 Sum_probs=81.2
Q ss_pred CCCCcEEEEEECCEE-EEeeeccCC-CCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccC
Q 045058 618 GTSDTYCVAKYGHKW-VRTRTLVDN-LSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET 695 (1005)
Q Consensus 618 ~~~dpyv~~~~g~~~-~~T~~~~~t-~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 695 (1005)
...++|+.+.+.... .+|..+.+. .+|.|.+.|+.........+++.+-+.+..+ -...+|.+.++...+..
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G------~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG------WSKRWGRVKISFLQYCS 209 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc------ceeEEEEeccchhhhhc
Confidence 346899999997765 488888888 7999999998888888889999999887654 57899999999999999
Q ss_pred CCEEeeeEeeeecCCCCCceeeEEEEEEEEee
Q 045058 696 GRIYTHSYPLLVLHPTGVKKMGELHLAIRFSC 727 (1005)
Q Consensus 696 ~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~ 727 (1005)
+.....|+++.....+...+.-.+.+.+.|.+
T Consensus 210 ~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~ 241 (887)
T KOG1329|consen 210 GHRIGGWFPILDNDGKPHQKGSNESLRLGFTP 241 (887)
T ss_pred cccccceeeeeccCCccccCCcccceEEeeEe
Confidence 88888999987655543333234455555544
No 288
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=79.78 E-value=3.9 Score=33.69 Aligned_cols=49 Identities=24% Similarity=0.365 Sum_probs=37.3
Q ss_pred EceecCCCCCCCCCCCCeEEEeecCCCCc--cceEEEEEEEEeccCCcccccc
Q 045058 354 DINEVPLRVPPDSPLAPEWYRLEDKKGEK--IKGELMLAVWIGTQADEAFSDA 404 (1005)
Q Consensus 354 ~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--~~G~i~l~~~~~~~~d~~~~~~ 404 (1005)
++..+.. .|++....+|..|.++.... .+|++.+++....++|+.....
T Consensus 2 DlgtVY~--qP~H~~~~KW~~L~dP~D~~~G~kGYlKv~i~Vlg~GD~~~~~~ 52 (72)
T PF08151_consen 2 DLGTVYN--QPDHQFYRKWALLTDPDDTSAGVKGYLKVDISVLGPGDEPPVEK 52 (72)
T ss_pred ceeeeec--CCCCeeEeceEEecCCCCCccCCceEEEEEEEEEcCCCcCCCCC
Confidence 3444443 35688899999999987543 7899999999999988766544
No 289
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=79.39 E-value=17 Score=36.38 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=38.7
Q ss_pred eeeeeeecCCCCCeeeeEEEEee--cCCCCcEEEEEEEeCCC---CCCceeEEEEEEce
Q 045058 303 KGITKHYEKNQNPQWHQVFAFSR--DRMQASVLEVVIKDKDL---VKDDFVGIVRFDIN 356 (1005)
Q Consensus 303 ~~kT~~~~~~~nP~wne~f~f~~--~~~~~~~l~v~V~d~~~---~~d~~lG~~~i~l~ 356 (1005)
.++|.+...+.+|.|+|++.+.+ .......|.|+.++... .....+|.+-++|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 46899999999999999999875 34456789998888641 11245666666553
No 290
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=77.36 E-value=12 Score=37.09 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=58.3
Q ss_pred CCcEEEEEECCEEE-EeeeccC--CCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccCC
Q 045058 620 SDTYCVAKYGHKWV-RTRTLVD--NLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLETG 696 (1005)
Q Consensus 620 ~dpyv~~~~g~~~~-~T~~~~~--t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 696 (1005)
..-|+++.++++.+ +|+...- ...-.||+.|.+.+..--..|.|+||.... ..+..|+.+.||+-.....
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-------~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-------LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-------ccceEEEEEEeeCCCCccc
Confidence 35799999988754 6665543 344567999999998877799999999854 3789999999998765443
Q ss_pred --CE--EeeeEeee
Q 045058 697 --RI--YTHSYPLL 706 (1005)
Q Consensus 697 --~~--~~~~~~L~ 706 (1005)
.. ...||.+.
T Consensus 110 ~~~~~~~~~~~eFs 123 (168)
T PF15625_consen 110 TSTDNVPLEEYEFS 123 (168)
T ss_pred ccccCCceEeEEEc
Confidence 11 34566654
No 291
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=76.23 E-value=1.1e+02 Score=34.71 Aligned_cols=45 Identities=16% Similarity=0.290 Sum_probs=34.1
Q ss_pred ccEEEEEEccc-ccCCCEEeeeEeeeecCCCCCceeeEEEEEEEEeec
Q 045058 682 KIGKVRIRIST-LETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCT 728 (1005)
Q Consensus 682 ~lG~~~i~l~~-l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~~~ 728 (1005)
.+|.+.||+.. +.++...+.|||+.....+.. ..|.+ +.++++..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeeec
Confidence 48999999999 777778899999987655444 33777 77776543
No 292
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=75.41 E-value=15 Score=33.02 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=49.2
Q ss_pred EEEEEECCE-EEEeeeccCCCCceeccEEEEEEeCC--------CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccc
Q 045058 623 YCVAKYGHK-WVRTRTLVDNLSPKYNEQYTWEVFDP--------ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTL 693 (1005)
Q Consensus 623 yv~~~~g~~-~~~T~~~~~t~nP~wne~f~~~v~~~--------~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l 693 (1005)
||.+.+-.. ...|.++ ...+|.+|-+-.|.|.-. ...+.|+++..- +.....||.+.|++..+
T Consensus 2 Fct~dFydfEtq~Tpvv-~G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-------g~d~~tla~~~i~l~~l 73 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVV-RGLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-------GSDFETLAAGQISLRPL 73 (107)
T ss_dssp EEEE-STT---EE---E-ESSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--------SS-EEEEEEEEE--SHH
T ss_pred EEEEEeeceeeecccce-eCCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-------cCCeEEEEEEEeechhh
Confidence 566655443 3444444 588999998888887632 468999999863 22578899999999997
Q ss_pred cCC--CEEeeeEeeeecCCCCCceeeEEEEEEEEe
Q 045058 694 ETG--RIYTHSYPLLVLHPTGVKKMGELHLAIRFS 726 (1005)
Q Consensus 694 ~~~--~~~~~~~~L~~~~~~~~~~~G~i~l~~~~~ 726 (1005)
... ........|.....+ ..|.|++.++..
T Consensus 74 l~~~~~~i~~~~~l~g~~~~---~~g~l~y~~rl~ 105 (107)
T PF11618_consen 74 LESNGERIHGSATLVGVSGE---DFGTLEYWIRLR 105 (107)
T ss_dssp HH--S--EEEEEEE-BSSS----TSEEEEEEEEEE
T ss_pred hcCCCceEEEEEEEeccCCC---eEEEEEEEEEec
Confidence 632 245566666533322 459999888864
No 293
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=73.66 E-value=8.7 Score=43.33 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHhHH---HHHhhccccCCchhHHHHHHHHHHHHHHHHHHH
Q 045058 916 VAGRIQTVVGDVATQG---ERLQALISWRDPRATAIFITFCLVAALVLFLTP 964 (1005)
Q Consensus 916 ~~~~vQ~~l~~~a~~~---e~~~~l~~w~~p~~t~~~~~~~~~~~~v~~~iP 964 (1005)
...++=..|+.+-.++ +++.++++|++|..|..+++++...++..++..
T Consensus 11 n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l 62 (359)
T PF06398_consen 11 NFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLL 62 (359)
T ss_pred ChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHH
Confidence 3344555566666666 899999999999988776666666665555433
No 294
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=68.28 E-value=56 Score=35.17 Aligned_cols=111 Identities=16% Similarity=0.248 Sum_probs=75.9
Q ss_pred eEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCC--eeeeEEEEeecCCCCcEEEEEEEeCCCCCCce
Q 045058 270 YFLYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNP--QWHQVFAFSRDRMQASVLEVVIKDKDLVKDDF 347 (1005)
Q Consensus 270 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP--~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~ 347 (1005)
..|-|.|.+..++... ..-|+.+..|....+|..+.-+..- .-.+.....+..- ..+|.+.||-..+.+..-
T Consensus 58 F~LLVeI~EI~~i~k~-----khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-DnTLkI~lfKKkLvkk~h 131 (508)
T PTZ00447 58 FYLLVKINEIFNINKY-----KHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-DETLRVDLFTTKLTKKVH 131 (508)
T ss_pred eeEEEEehhhhccccc-----eeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec-CceEEEEEEeccccceeE
Confidence 5678888888777543 3679999999988888555433322 2233444444443 368999999999888999
Q ss_pred eEEEEEEcee-cCCCCCCCCCCCCeEEEeecCCCCccceEEEEEEE
Q 045058 348 VGIVRFDINE-VPLRVPPDSPLAPEWYRLEDKKGEKIKGELMLAVW 392 (1005)
Q Consensus 348 lG~~~i~l~~-l~~~~~~~~~~~~~w~~L~~~~~~~~~G~i~l~~~ 392 (1005)
||.+.+++.. +... .-...+||.+..... ..++|.+++.
T Consensus 132 IgdI~InIn~dIIdk----~FPKnkWy~c~kDGq--~~cRIqLSFh 171 (508)
T PTZ00447 132 IGQIKIDINASVISK----SFPKNEWFVCFKDGQ--EICKVQMSFY 171 (508)
T ss_pred EEEEEecccHHHHhc----cCCccceEEEecCCc--eeeeEEEEeh
Confidence 9999999874 3332 234678999955332 4578888774
No 295
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.00 E-value=1.7 Score=51.00 Aligned_cols=95 Identities=13% Similarity=0.056 Sum_probs=62.2
Q ss_pred CCCcEEEEEECCe-EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccEEEEEeCCcccCCCC
Q 045058 24 SSSAFVELYFDGQ-RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLGKVCLTGNSFVPLSD 102 (1005)
Q Consensus 24 ~~dpyv~v~~~~~-~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG~~~i~l~~l~~~~~ 102 (1005)
..+||+.|.++-. ...+.++..+..|.|+|+|..++.... .+.|.|+... ....+.+.-.+.+...++.....
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~~~~-----~~~i~v~~~~-~~~~~~~~a~~~~~~e~~k~~~~ 100 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVVAGG-----AKNIIVLLKS-PDPKALSEAQLSLQEESQKLLAL 100 (694)
T ss_pred hhhhhheeccceeecccccCCCCCCCchhhhheeeeeecCC-----ceEEEEEecC-CcchhhHHHhHHHHHHHHHHHhh
Confidence 4689999998754 346667889999999999999986543 7899999862 22234444444444444433222
Q ss_pred ceeeeEecccCCCcceeeeEEEEEEEEec
Q 045058 103 SVVLHYPLEKRGIFSHVRGELGLKVYITD 131 (1005)
Q Consensus 103 ~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 131 (1005)
....|..+++ .|.+...+.+..
T Consensus 101 ~~~~w~~~~~-------~g~~~~~~~~~~ 122 (694)
T KOG0694|consen 101 EQRLWVLIEE-------LGTLLKPAALTG 122 (694)
T ss_pred hhhhcccccc-------ccceeeeecccC
Confidence 3346877644 477777775544
No 296
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=66.99 E-value=27 Score=40.24 Aligned_cols=117 Identities=18% Similarity=0.253 Sum_probs=78.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCCCCcEEEEEECCEEEEeeeccCCCCceeccEEEEEEeCCCceEEEEEEeCCCcCCCCC
Q 045058 597 ILELGILNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTLVDNLSPKYNEQYTWEVFDPATVLTVGVFDNSQLGEKSN 676 (1005)
Q Consensus 597 ~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~g~~~~~T~~~~~t~nP~wne~f~~~v~~~~~~l~i~v~d~~~~~~~~~ 676 (1005)
.++|.|.+.+||+.. ...-=.||.+.+.+.+.+|.-. ....|.|.-+=.|.-..|-.++.+.+|.+..-. -
T Consensus 342 smevvvmevqglksv-----apnrivyctmevegeklqtdqa-easkp~wgtqgdfstthplpvvkvklftestgv---l 412 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSV-----APNRIVYCTMEVEGEKLQTDQA-EASKPKWGTQGDFSTTHPLPVVKVKLFTESTGV---L 412 (1218)
T ss_pred eeeEEEeeecccccc-----CCCeeEEEEEEecccccccchh-hhcCCCCCcCCCcccCCCCceeEEEEEeeccee---E
Confidence 467888899999843 2233579999998888888754 345799999888988888889999999875411 2
Q ss_pred CCCCcccEEEEEEcccccCCCEEeeeEeeeecCCCCCceeeEEEEEEEE
Q 045058 677 GNKDLKIGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRF 725 (1005)
Q Consensus 677 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~i~l~~~~ 725 (1005)
.-.|..||++.|.-..=.. ....|+.+........ ..=.|.|+++.
T Consensus 413 aledkelgrvil~ptpns~--ks~ewh~mtvpknsqd-qdlkiklavrm 458 (1218)
T KOG3543|consen 413 ALEDKELGRVILQPTPNSA--KSPEWHTMTVPKNSQD-QDLKIKLAVRM 458 (1218)
T ss_pred EeechhhCeEEEecCCCCc--CCccceeeecCCCCcC-ccceEEEEEec
Confidence 3468889999775432222 2256777764443221 12345566655
No 297
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=63.96 E-value=34 Score=33.78 Aligned_cols=67 Identities=10% Similarity=0.190 Sum_probs=50.5
Q ss_pred CcEEEEEECCee-eeeeeecC--CCCCeeeeEEEEeecCCCCcEEEEEEEeCCCCCCceeEEEEEEceecC
Q 045058 292 DPFVEVKIGNYK-GITKHYEK--NQNPQWHQVFAFSRDRMQASVLEVVIKDKDLVKDDFVGIVRFDINEVP 359 (1005)
Q Consensus 292 dPyv~v~~~~~~-~kT~~~~~--~~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~d~~lG~~~i~l~~l~ 359 (1005)
.-|+++.++++. .+|+...- ...-.|||.|.+.+.... ..|.++||......+..|+++.+++-...
T Consensus 38 ~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-esi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 38 RYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-ESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred eEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC-CEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 458899998865 45554332 334567899999887755 58999999998778999999999976554
No 298
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=62.23 E-value=33 Score=34.10 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=42.5
Q ss_pred EEEEeeeccCCCCceeccEEEEEEeC---CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEccc
Q 045058 631 KWVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRIST 692 (1005)
Q Consensus 631 ~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 692 (1005)
..+.|.+.+.+.+|.|+|++.+.++- +...|.++.++-+.-...........+|-+-+||-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 35788899999999999999998874 356899999985532100011123567877777753
No 299
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=62.19 E-value=80 Score=35.26 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=63.5
Q ss_pred CCCcEEEEEECCEEEEeeeccC----CCC-cee-c--cEEEEEEe------CC------CceEEEEEEeCCCcCCCCCCC
Q 045058 619 TSDTYCVAKYGHKWVRTRTLVD----NLS-PKY-N--EQYTWEVF------DP------ATVLTVGVFDNSQLGEKSNGN 678 (1005)
Q Consensus 619 ~~dpyv~~~~g~~~~~T~~~~~----t~n-P~w-n--e~f~~~v~------~~------~~~l~i~v~d~~~~~~~~~~~ 678 (1005)
.+-+||+|++.+--.+|..+.- +.+ |.= + -.|.++-. .+ ...|.|.||--..-.--+-..
T Consensus 35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~ 114 (460)
T PF06219_consen 35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGN 114 (460)
T ss_pred CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccccc
Confidence 4688999999987777776551 112 111 1 23444211 11 257999999854211000124
Q ss_pred CCcccEEEEEEcccccC--CC---EEeeeEeeeecCCCC-CceeeEEEEEEEEeec
Q 045058 679 KDLKIGKVRIRISTLET--GR---IYTHSYPLLVLHPTG-VKKMGELHLAIRFSCT 728 (1005)
Q Consensus 679 ~d~~lG~~~i~l~~l~~--~~---~~~~~~~L~~~~~~~-~~~~G~i~l~~~~~~~ 728 (1005)
...+||+++|+|.- .. ++ .+..|..+-....++ .....+|||.++.++.
T Consensus 115 ~~klLG~v~vpldl-~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD 169 (460)
T PF06219_consen 115 SGKLLGKVRVPLDL-KWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD 169 (460)
T ss_pred cceEEEEEEEEecc-ccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence 67899999999963 22 22 356788886443322 1235799999987654
No 300
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=57.09 E-value=1e+02 Score=33.31 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=72.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCC--ceeeEEEEEeccCccccceEEEEEEEeCCCCCC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNP--VWNESFYFNISDASKLHYLTLEAYIYNNIGDTN 82 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP--~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 82 (1005)
.|-|.|.+-.++. ....-|+++..+....+|..+.-+..- .-.+.....+..-+ .+|++.+|-. .+.
T Consensus 59 ~LLVeI~EI~~i~-----k~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcD----nTLkI~lfKK--kLv 127 (508)
T PTZ00447 59 YLLVKINEIFNIN-----KYKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCD----ETLRVDLFTT--KLT 127 (508)
T ss_pred eEEEEehhhhccc-----cceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecC----ceEEEEEEec--ccc
Confidence 3556666655543 346779999999988888644332222 23466666664433 5899999985 355
Q ss_pred CCcccEEEEEeCCc-ccCCCCceeeeEecccCCCcceeeeEEEEEEE
Q 045058 83 SRSFLGKVCLTGNS-FVPLSDSVVLHYPLEKRGIFSHVRGELGLKVY 128 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~-l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 128 (1005)
+..-||...+.+.. +....-....||-+.+.+ ...++|.++++
T Consensus 128 kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDG---q~~cRIqLSFh 171 (508)
T PTZ00447 128 KKVHIGQIKIDINASVISKSFPKNEWFVCFKDG---QEICKVQMSFY 171 (508)
T ss_pred ceeEEEEEEecccHHHHhccCCccceEEEecCC---ceeeeEEEEeh
Confidence 78899999999865 433333335799996554 45788888875
No 301
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=52.39 E-value=61 Score=32.42 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=43.5
Q ss_pred EEEEeeeccCCCCceeccEEEEEEeC---CCceEEEEEEeCCCcCCC---CCCCCCcccEEEEEEccc
Q 045058 631 KWVRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGVFDNSQLGEK---SNGNKDLKIGKVRIRIST 692 (1005)
Q Consensus 631 ~~~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v~d~~~~~~~---~~~~~d~~lG~~~i~l~~ 692 (1005)
..+.|.+...+.+|.|+|++.+.++- +...|.++.++-+.-... ........+|-+-+||-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 35788899999999999999998864 356899999987532100 011234567888888755
No 302
>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function.
Probab=51.29 E-value=42 Score=39.86 Aligned_cols=57 Identities=28% Similarity=0.386 Sum_probs=41.2
Q ss_pred HHHHhHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccCC
Q 045058 925 GDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRR 984 (1005)
Q Consensus 925 ~~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~ 984 (1005)
=-++.+...+.-|-+|++|+.|..|+.+-++|.++=+++|.=.++|+ +.+.+|..|.
T Consensus 106 v~~~~~~khi~RLrSW~eprRT~~fc~vYf~aW~~dll~p~~~~~L~---~li~~P~~r~ 162 (642)
T PF11696_consen 106 VGLAAFIKHIARLRSWREPRRTAAFCAVYFIAWLLDLLVPAFFAFLI---ALILSPPARS 162 (642)
T ss_pred HHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCccccc
Confidence 34445566777788999999999999888888888888887544444 3334666665
No 303
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=50.62 E-value=33 Score=34.12 Aligned_cols=40 Identities=10% Similarity=0.109 Sum_probs=31.9
Q ss_pred EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC
Q 045058 37 RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN 77 (1005)
Q Consensus 37 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 77 (1005)
...|.|..++.+|.|+|++.+.++-.- .....|.|+.++.
T Consensus 55 ~~~S~V~yHnk~P~f~DEiKi~LP~~l-~~~hHLlFtF~Hv 94 (179)
T cd08696 55 EAYTAVTYHNKSPDFYDEIKIKLPADL-TDNHHLLFTFYHI 94 (179)
T ss_pred eEEEEEEEeCCCCcccceEEEEcCCCC-CCCeEEEEEEEEe
Confidence 467778999999999999999986432 3456888999885
No 304
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=49.90 E-value=39 Score=33.69 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=26.9
Q ss_pred cccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058 41 TIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI 78 (1005)
Q Consensus 41 ~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 78 (1005)
++.....+|.|+|+|.+.++-. ......|.|++++..
T Consensus 57 sv~~~~k~p~f~deiKi~LP~~-l~~~~HLlFtf~hv~ 93 (178)
T cd08679 57 SVVYYHKNPVFNDEIKIQLPAD-LTPQHHLLFTFYHVS 93 (178)
T ss_pred EEEEcCCCCCCceeEEEecCCc-cCCCeEEEEEEEccc
Confidence 3444448999999999998432 235678999999863
No 305
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=47.78 E-value=45 Score=33.36 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=32.3
Q ss_pred EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCC
Q 045058 37 RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNI 78 (1005)
Q Consensus 37 ~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 78 (1005)
...|.|..++.+|.|+|++.+.++-.- .....|.|+.++..
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l-~~~hHLlFtFyHvs 97 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQL-HEKHHLLFTFYHVS 97 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcC-CCCeeEEEEEEeec
Confidence 467778899999999999999985432 34568889999863
No 306
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=46.86 E-value=90 Score=36.25 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=66.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCC--CC
Q 045058 5 KLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGD--TN 82 (1005)
Q Consensus 5 ~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~--~~ 82 (1005)
.+.|.|++..||+... ..-=.||...++|++.+|.... ...|.|...=.|.-..+- ..+.+.+|-...+ ..
T Consensus 342 smevvvmevqglksva--pnrivyctmevegeklqtdqae-askp~wgtqgdfstthpl----pvvkvklftestgvlal 414 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVA--PNRIVYCTMEVEGEKLQTDQAE-ASKPKWGTQGDFSTTHPL----PVVKVKLFTESTGVLAL 414 (1218)
T ss_pred eeeEEEeeeccccccC--CCeeEEEEEEecccccccchhh-hcCCCCCcCCCcccCCCC----ceeEEEEEeecceeEEe
Confidence 4678889999886422 2234699999999999988654 457999988878765544 3677788775332 33
Q ss_pred CCcccEEEEEeCCcccCCCCceeeeEeccc
Q 045058 83 SRSFLGKVCLTGNSFVPLSDSVVLHYPLEK 112 (1005)
Q Consensus 83 ~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~ 112 (1005)
.|+.||++.+.-.. +......|+.+.-
T Consensus 415 edkelgrvil~ptp---ns~ks~ewh~mtv 441 (1218)
T KOG3543|consen 415 EDKELGRVILQPTP---NSAKSPEWHTMTV 441 (1218)
T ss_pred echhhCeEEEecCC---CCcCCccceeeec
Confidence 68999999887332 2223345877653
No 307
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=46.78 E-value=59 Score=32.42 Aligned_cols=58 Identities=10% Similarity=0.188 Sum_probs=40.0
Q ss_pred EEeeeccCCCCceeccEEEEEEeC---CCceEEEEEEeCCCcCCCCCCCCCcccEEEEEEccc
Q 045058 633 VRTRTLVDNLSPKYNEQYTWEVFD---PATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRIST 692 (1005)
Q Consensus 633 ~~T~~~~~t~nP~wne~f~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~ 692 (1005)
++|-+..+ .+|.|+|+|.+.++. +...|.+++++-+.-.. ........+|.+.+||-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~-~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKK-QGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccc-cCCCccceEEEEEEeccc
Confidence 44444445 999999999998863 35689999998753210 012346778888888865
No 308
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=43.74 E-value=42 Score=40.03 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHhHHHHHhhccccCCchhHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhcCC
Q 045058 917 AGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAAL---VLFLTPFQVIAALAGFWVMRHP 980 (1005)
Q Consensus 917 ~~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~~---v~~~iP~r~i~l~~g~~~~~~P 980 (1005)
..-.+..|-=+...+..++.|..|.+|..|..|+++.+.... +.|++|.-.++++.+..++||-
T Consensus 489 vav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~ 555 (683)
T PF04842_consen 489 VAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQ 555 (683)
T ss_pred HHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333455555667778889999999999999876554443332 5677887766666665555553
No 309
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=43.51 E-value=4.6 Score=46.53 Aligned_cols=56 Identities=18% Similarity=0.183 Sum_probs=39.7
Q ss_pred EEEEEEEEeeeCCCCC----CCCCCCcEEEEEECCeEEeeecccCCCCCcccccEEEEEeeC
Q 045058 435 YVRVNVVEAQDLVPTE----KNHFPDVYVKAQIGNQVLKTKICQARTLSAVWNEDLLFVAAE 492 (1005)
Q Consensus 435 ~L~V~v~~a~~L~~~d----~~~~~dpyv~v~lg~~~~kT~~~~~~t~~P~w~e~f~f~v~~ 492 (1005)
....+++.|.++++.- ..-.-++++...++.+.++|+... .+.+|.|||. .+.+.+
T Consensus 281 i~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~frt~~~~-~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 281 IALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFRTEISD-DTEKPIYNED-EREDSD 340 (975)
T ss_pred hHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhhhhhhc-cccccccccc-cccccc
Confidence 3344556666664321 122358899999999999999996 9999999997 655544
No 310
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=43.08 E-value=1.5e+02 Score=28.13 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=60.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEECCeeeeeeeecCCCCCeeeeEEEEee------------cCCCCcEEEEEEEe
Q 045058 272 LYVRVVKARELPAMDLTGSIDPFVEVKIGNYKGITKHYEKNQNPQWHQVFAFSR------------DRMQASVLEVVIKD 339 (1005)
Q Consensus 272 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~~~nP~wne~f~f~~------------~~~~~~~l~v~V~d 339 (1005)
|.|+-+.|-+.-- ...-|-|..|++.++..+|+-.....-=.++|.|.|.. ..+....+.|+++.
T Consensus 4 L~i~aVTCPGv~L---~~~~~vyL~v~~lg~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQ 80 (140)
T PF14909_consen 4 LEIHAVTCPGVWL---CDKGDVYLSVCILGQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQ 80 (140)
T ss_pred EEEEEEecCCeEe---CCCCCEEEEEEEcccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEE
Confidence 4455555544322 22348899999999999998665554456789998862 13345789999998
Q ss_pred CCCCCCceeEEEEEEceecCC
Q 045058 340 KDLVKDDFVGIVRFDINEVPL 360 (1005)
Q Consensus 340 ~~~~~d~~lG~~~i~l~~l~~ 360 (1005)
........|+...-+++|+..
T Consensus 81 l~~~~g~iLA~ye~n~rDfLf 101 (140)
T PF14909_consen 81 LVPPAGEILAYYEENTRDFLF 101 (140)
T ss_pred EeCCCCcEEEEEeccccceEc
Confidence 774448899999999998875
No 311
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=40.97 E-value=58 Score=39.75 Aligned_cols=72 Identities=18% Similarity=0.135 Sum_probs=48.7
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEE----CCe----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEE
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYF----DGQ----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYI 74 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~----~~~----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V 74 (1005)
++.++|+++++.++.. ....|-+|.|.. |++ ...|+-+....+|.||+...|++.-.+-.....|-|.|
T Consensus 342 ~~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 3568899998887642 234566666664 343 24566666689999999999998655544556677777
Q ss_pred EeC
Q 045058 75 YNN 77 (1005)
Q Consensus 75 ~d~ 77 (1005)
|.-
T Consensus 419 ~~v 421 (1076)
T KOG0904|consen 419 YAV 421 (1076)
T ss_pred eEe
Confidence 653
No 312
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=40.90 E-value=2.5e+02 Score=27.58 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=53.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCCCCcEEEEEE--CCEE---------EEeeeccC-----CCCceeccEEEEEEeC--C--
Q 045058 598 LELGILNAVGLHPMKTRDGRGTSDTYCVAKY--GHKW---------VRTRTLVD-----NLSPKYNEQYTWEVFD--P-- 657 (1005)
Q Consensus 598 l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~--g~~~---------~~T~~~~~-----t~nP~wne~f~~~v~~--~-- 657 (1005)
+.-+|.+|.+.. .++-||+..+ |..| -.|.+... ...-.||.-|++.... +
T Consensus 4 v~G~I~~a~~f~---------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~g 74 (168)
T PF07162_consen 4 VIGEIESAEGFE---------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQG 74 (168)
T ss_pred EEEEEEEEECCC---------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCC
Confidence 344678888765 2367998655 4333 45555442 2346799887777653 3
Q ss_pred CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEc
Q 045058 658 ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRI 690 (1005)
Q Consensus 658 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l 690 (1005)
...|.|+||..|.++ .+...|...+.|
T Consensus 75 wP~L~l~V~~~D~~g------r~~~~GYG~~~l 101 (168)
T PF07162_consen 75 WPQLVLQVYSLDSWG------RDRVEGYGFCHL 101 (168)
T ss_pred CceEEEEEEEEcccC------CeEEeEEeEEEe
Confidence 469999999999887 788888776666
No 313
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=39.13 E-value=3.2e+02 Score=25.51 Aligned_cols=94 Identities=13% Similarity=0.165 Sum_probs=50.5
Q ss_pred CcEEEEEEEEeecCCCCCCCCCCCcEEEEEECCeEe-eccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeCCCCC
Q 045058 3 NLKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQRF-RTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNNIGDT 81 (1005)
Q Consensus 3 ~~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~-~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~ 81 (1005)
...|.++=+.-.+++..+..+.|+||++|+-++... .|........-.=...+.+.+...-.+ ..-+.|.+|+.....
T Consensus 3 ~~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~GDV~i~~~~~~~~~ 81 (134)
T PF10409_consen 3 PRPLFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSYEDPKSYEQDSVIIELPKNLPL-RGDVLIKFYHKRSSS 81 (134)
T ss_dssp --EEEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTCCCCCEEETTCEEEEEEEEEEE-ESEEEEEEEECETTE
T ss_pred CeeEEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccceeccccccceeEEEEeCCCCeE-eCCEEEEEEeCCCcc
Confidence 345666666667777666677899999999988765 344322221111123333433211111 234778888864223
Q ss_pred CCCcccEEEEEeCCcc
Q 045058 82 NSRSFLGKVCLTGNSF 97 (1005)
Q Consensus 82 ~~d~~lG~~~i~l~~l 97 (1005)
..++.+.++.+.-.-+
T Consensus 82 ~~~~~~f~~~FnT~Fi 97 (134)
T PF10409_consen 82 MSKEKMFRFWFNTGFI 97 (134)
T ss_dssp CCCEEEEEEEEEGGGS
T ss_pred cccCeEEEEEEeeeee
Confidence 4566677766664333
No 314
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.83 E-value=1.8e+02 Score=30.23 Aligned_cols=37 Identities=14% Similarity=0.018 Sum_probs=26.7
Q ss_pred HHHhHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Q 045058 926 DVATQGERLQALISWRDPRATAIFITFCLVAALVLFL 962 (1005)
Q Consensus 926 ~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~~v~~~ 962 (1005)
.++..+-.++.++.=+|+..+..+.+.+++.+.+.-+
T Consensus 132 ~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~ 168 (230)
T KOG1792|consen 132 EINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSL 168 (230)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 4555556666677778888888888888877777644
No 315
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=37.24 E-value=3.3e+02 Score=25.37 Aligned_cols=88 Identities=9% Similarity=0.116 Sum_probs=53.1
Q ss_pred EEEEEEEeeeCCCCCCCCCCCcEEEEEECCeEE-eeecccCCCCCccc-ccEEEE--EeeCCCCCeEEEEEEeccC-CCC
Q 045058 436 VRVNVVEAQDLVPTEKNHFPDVYVKAQIGNQVL-KTKICQARTLSAVW-NEDLLF--VAAEPFEDHLVLTVEDRVG-PGK 510 (1005)
Q Consensus 436 L~V~v~~a~~L~~~d~~~~~dpyv~v~lg~~~~-kT~~~~~~t~~P~w-~e~f~f--~v~~~~~~~l~i~V~d~d~-~~~ 510 (1005)
|.+.=+.-..+|..+.++.+.||++|.-++... .|.... .. .... ...+.+ ...-+....+.|.++.... ...
T Consensus 6 l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~~~v~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~~~~~ 83 (134)
T PF10409_consen 6 LFLKSIILHGIPNFNSGGGCRPYIEIYNGGKKVFSTSKSY-ED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRSSSMS 83 (134)
T ss_dssp EEEEEEEEES-TTSTTSSCCTEEEEEEETTEEEEETCCTC-CC-CCEEETTCEEEEEEEEEEEESEEEEEEEECETTECC
T ss_pred EEEEEEEEECCCccCCCCCEEEEEEEECCCccEEEeccce-ec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCCcccc
Confidence 444444446778777777899999999988766 333321 11 1111 122333 3223345689999998863 446
Q ss_pred CceeEEEEEcccccc
Q 045058 511 DEIIGRVIIPLSAIE 525 (1005)
Q Consensus 511 d~~iG~~~i~l~~l~ 525 (1005)
.+.+.++.+.-.-+.
T Consensus 84 ~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 84 KEKMFRFWFNTGFIE 98 (134)
T ss_dssp CEEEEEEEEEGGGSB
T ss_pred cCeEEEEEEeeeeee
Confidence 777888888776655
No 316
>COG5052 YOP1 Protein involved in membrane traffic [Intracellular trafficking and secretion]
Probab=36.64 E-value=1.8e+02 Score=28.59 Aligned_cols=92 Identities=14% Similarity=0.021 Sum_probs=54.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHhHHHHHhhccccCCch------------------hHHHHHHHHHHHH-----HHHHHHHH
Q 045058 909 RYDRLRSVAGRIQTVVGDVATQGERLQALISWRDPR------------------ATAIFITFCLVAA-----LVLFLTPF 965 (1005)
Q Consensus 909 ~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~------------------~t~~~~~~~~~~~-----~v~~~iP~ 965 (1005)
.|-.+......+.+.+..+-.+++.+.|++...-|. ++.+.+..|+-+. .+++++|+
T Consensus 37 ~Y~~~~asf~~l~~lfs~vlG~g~ilt~~~~~~lP~~~~l~a~~~~n~~dd~q~l~ywmV~~~lsaie~~s~~il~~vP~ 116 (186)
T COG5052 37 KYFMAGASFLYLLNLFSTVLGFGLILTNVAGFSLPAQLSLVAFYTLNFMDDTQLLTYWMVFGFLSAIEKYSGAILSKVPF 116 (186)
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHccHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 334445556667777777777777777766555553 4444444444332 35788997
Q ss_pred HHHHHHhhhhhhcCCccCCCCCCchhhhhhcCCCCc
Q 045058 966 QVIAALAGFWVMRHPRFRRRLPSVPINFFRRLPART 1001 (1005)
Q Consensus 966 r~i~l~~g~~~~~~P~f~~~~~~~~~~~~~r~p~~~ 1001 (1005)
.|..=.+.+..+-.|+|+. -.--..+..++.||+.
T Consensus 117 Y~~~K~vFllw~~~prt~G-A~~IY~~~i~p~~s~~ 151 (186)
T COG5052 117 YWTLKNVFLLWLLLPRTEG-ARIIYDDIIAPDVSDH 151 (186)
T ss_pred HHHHHHHHHHHHhccccCc-eeeeHHhhccccccHH
Confidence 7755444433455588886 2233556666666653
No 317
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=36.23 E-value=98 Score=38.06 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhh
Q 045058 960 LFLTPFQVIAALAGFW 975 (1005)
Q Consensus 960 ~~~iP~r~i~l~~g~~ 975 (1005)
++|||.+||++++-.|
T Consensus 91 ~~~~p~~~~~~~~~~~ 106 (697)
T PF09726_consen 91 LFFIPVHWLFFAASTY 106 (697)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 5679999999886544
No 318
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=34.64 E-value=3.6e+02 Score=26.52 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=55.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEC---------C-e-EeeccccCC-----CCCCceeeEEEEEeccCccccceE
Q 045058 6 LGVQVVGAHNLLPKDGKGSSSAFVELYFD---------G-Q-RFRTTIKEN-----DLNPVWNESFYFNISDASKLHYLT 69 (1005)
Q Consensus 6 l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---------~-~-~~~T~v~~~-----t~nP~Wne~f~f~v~~~~~~~~~~ 69 (1005)
+.-.|.+|.+.. ..+-||+..+. + . ...|.+... .-.-.||..|.+.........-..
T Consensus 4 v~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~ 77 (168)
T PF07162_consen 4 VIGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQ 77 (168)
T ss_pred EEEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCce
Confidence 455788888653 35678887761 2 2 466665432 334679999998875544333358
Q ss_pred EEEEEEeCCCCCCCCcccEEEEEeC
Q 045058 70 LEAYIYNNIGDTNSRSFLGKVCLTG 94 (1005)
Q Consensus 70 l~v~V~d~~~~~~~d~~lG~~~i~l 94 (1005)
|.|+||..| ..+++...|-..+.|
T Consensus 78 L~l~V~~~D-~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 78 LVLQVYSLD-SWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEEEEc-ccCCeEEeEEeEEEe
Confidence 999999985 556899999877774
No 319
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.39 E-value=2e+02 Score=27.56 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=44.7
Q ss_pred CCCCcEEEEEE--CCEEEEeee-----------ccCCCCc-eeccEEEEEEeC--C--CceEEEEEEeCCCcCCCCCCCC
Q 045058 618 GTSDTYCVAKY--GHKWVRTRT-----------LVDNLSP-KYNEQYTWEVFD--P--ATVLTVGVFDNSQLGEKSNGNK 679 (1005)
Q Consensus 618 ~~~dpyv~~~~--g~~~~~T~~-----------~~~t~nP-~wne~f~~~v~~--~--~~~l~i~v~d~~~~~~~~~~~~ 679 (1005)
..+|-||+... |+.|.-+.- .++-.|| +||--++...+. | -..|.+.||-.|.++ +
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G------~ 97 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSG------K 97 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCC------c
Confidence 35688998765 665543321 1122344 566655555543 3 358999999999877 8
Q ss_pred CcccEEEEEEcc
Q 045058 680 DLKIGKVRIRIS 691 (1005)
Q Consensus 680 d~~lG~~~i~l~ 691 (1005)
|...|...|++-
T Consensus 98 d~v~GYg~~hiP 109 (187)
T KOG4027|consen 98 DCVTGYGMLHIP 109 (187)
T ss_pred ceeeeeeeEecC
Confidence 899999888774
No 320
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=34.37 E-value=1.8e+02 Score=32.63 Aligned_cols=103 Identities=16% Similarity=0.259 Sum_probs=60.4
Q ss_pred CCcEEEEEECCeeeeeeeecC----CCC-Cee---eeEEEEeecCC---C--------CcEEEEEEEeCC------C-CC
Q 045058 291 IDPFVEVKIGNYKGITKHYEK----NQN-PQW---HQVFAFSRDRM---Q--------ASVLEVVIKDKD------L-VK 344 (1005)
Q Consensus 291 ~dPyv~v~~~~~~~kT~~~~~----~~n-P~w---ne~f~f~~~~~---~--------~~~l~v~V~d~~------~-~~ 344 (1005)
+..||++++.+...+|..+.- ..+ |.- --.|++...++ . ...|+|.||... + .+
T Consensus 36 spCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~ 115 (460)
T PF06219_consen 36 SPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNS 115 (460)
T ss_pred CCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccccc
Confidence 456999999997766665422 111 111 12455542211 1 146999999864 2 45
Q ss_pred CceeEEEEEEceecCCCCCCCCCCCCeEEEeecCCCCc---cceEEEEEEEEe
Q 045058 345 DDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGEK---IKGELMLAVWIG 394 (1005)
Q Consensus 345 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~---~~G~i~l~~~~~ 394 (1005)
..+||.+.++|. +..........+.-|..+-...... ...++++.+...
T Consensus 116 ~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~E 167 (460)
T PF06219_consen 116 GKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAE 167 (460)
T ss_pred ceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEecc
Confidence 689999999986 3322111123456798887664321 346777777543
No 321
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=34.06 E-value=2.1e+02 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHhHHHHHhhcccc
Q 045058 906 VRMRYDRLRSVAGRIQTVVGDVATQGERLQALISW 940 (1005)
Q Consensus 906 ~~~~~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w 940 (1005)
+.++.+++.......+..+..++..++++.+...|
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW 52 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW 52 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666777788999999999999888
No 322
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=33.22 E-value=58 Score=40.08 Aligned_cols=85 Identities=13% Similarity=0.189 Sum_probs=67.0
Q ss_pred CCcEEEEEECCee-eeeeeecCC-CCCeeeeEEEEeecCCCCcEEEEEEEeCC-CCCCceeEEEEEEceecCCCCCCCCC
Q 045058 291 IDPFVEVKIGNYK-GITKHYEKN-QNPQWHQVFAFSRDRMQASVLEVVIKDKD-LVKDDFVGIVRFDINEVPLRVPPDSP 367 (1005)
Q Consensus 291 ~dPyv~v~~~~~~-~kT~~~~~~-~nP~wne~f~f~~~~~~~~~l~v~V~d~~-~~~d~~lG~~~i~l~~l~~~~~~~~~ 367 (1005)
.++|+.+.+.... .+|..+.+. .+|.|.+.|........ ..+.+.|.+.+ .+-...+|.+.++...+..+ .
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~-----~ 211 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSG-----H 211 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhcc-----c
Confidence 5899999988754 467766665 79999999988777766 57889999988 44489999999999988875 4
Q ss_pred CCCeEEEeecCCCC
Q 045058 368 LAPEWYRLEDKKGE 381 (1005)
Q Consensus 368 ~~~~w~~L~~~~~~ 381 (1005)
....|+++.+..+.
T Consensus 212 ~~~~~~~Il~~d~~ 225 (887)
T KOG1329|consen 212 RIGGWFPILDNDGK 225 (887)
T ss_pred cccceeeeeccCCc
Confidence 57788888776543
No 323
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=32.19 E-value=13 Score=43.04 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=32.5
Q ss_pred CCCcEEEEEECCeEeeccccCCCCCCceeeEEEEEecc
Q 045058 24 SSSAFVELYFDGQRFRTTIKENDLNPVWNESFYFNISD 61 (1005)
Q Consensus 24 ~~dpyv~v~~~~~~~~T~v~~~t~nP~Wne~f~f~v~~ 61 (1005)
..+|++.+.++.+.++|+....+.+|+|||. +++..+
T Consensus 304 ~~~~~~itsf~~~~frt~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 304 KDKWLAITSFGEQTFRTEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred CCCchheeecchhhhhhhhhccccccccccc-cccccc
Confidence 4689999999999999999999999999998 666543
No 324
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.12 E-value=3.7e+02 Score=26.95 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCChHHHHhhhccCCCcccc--------hhhhHHHHHHHHHHHHHHHHHHHHhhccccc
Q 045058 755 QLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWS--------MRRSKANFFRLMTVFSGLFAVGKWFADICMW 826 (1005)
Q Consensus 755 ~~~~l~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~d~~~fs--------~~~~k~n~~rl~~~~~~~~~~~~~~~~l~~W 826 (1005)
..+.....+.+.+...+...-| ..|.+ | ...|| ..++|.|+.+++.-..
T Consensus 18 ~~~~~~~~~~~~~~~~lst~Rp--W~ef~----d--~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~--------------- 74 (187)
T KOG3142|consen 18 SVESISSRAKQTIQSGLSTRRP--WSEFF----D--RSAFSRPRSLSDATSRIKRNLSYFRVNYV--------------- 74 (187)
T ss_pred chhhHHHHHHHHHHHHHhccCC--HHHHH----c--ccccCCCccHHHHHHHHHHHHHHHHHhHH---------------
Confidence 3444555556666666666655 34433 2 23332 3566666666554322
Q ss_pred CCchhHHHHHHHHHHHHhcccchHHHHHH
Q 045058 827 KNPITTVLVHVLYLMLACFPELILPTVFL 855 (1005)
Q Consensus 827 ~~p~~t~~~~~~~~~~~~~~~l~~p~~~l 855 (1005)
.+..+.++..++|+|-.++-++.+
T Consensus 75 -----~iv~~~~~~sLi~~P~~Livl~~l 98 (187)
T KOG3142|consen 75 -----IIVAILLFLSLITHPLSLIVLLAL 98 (187)
T ss_pred -----HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 223334555566887665443333
No 325
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=28.84 E-value=1.4e+02 Score=27.22 Aligned_cols=64 Identities=23% Similarity=0.303 Sum_probs=42.4
Q ss_pred CceEEEEEEeCCCcCCCCCCCCCcccEEEEEEcccccC--------------CCEEeeeEeeeecCCCCCceeeEEEEEE
Q 045058 658 ATVLTVGVFDNSQLGEKSNGNKDLKIGKVRIRISTLET--------------GRIYTHSYPLLVLHPTGVKKMGELHLAI 723 (1005)
Q Consensus 658 ~~~l~i~v~d~~~~~~~~~~~~d~~lG~~~i~l~~l~~--------------~~~~~~~~~L~~~~~~~~~~~G~i~l~~ 723 (1005)
...|.+.+++-..-. .......||.+.|++.+... -......|+|.... +. ..|+|.+.+
T Consensus 28 ~~pl~i~~~~~~~~~---~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~--~~-~~G~I~l~i 101 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGF---PTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDEN--GN-PVGEISLYI 101 (112)
T ss_pred CCceEEEEEecCCCC---CCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCC--Cc-eeeeEEEEE
Confidence 457788777643200 12366789999999988641 12456789998433 33 569999999
Q ss_pred EEee
Q 045058 724 RFSC 727 (1005)
Q Consensus 724 ~~~~ 727 (1005)
++++
T Consensus 102 RLsc 105 (112)
T PF14924_consen 102 RLSC 105 (112)
T ss_pred EEec
Confidence 9864
No 326
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=27.54 E-value=72 Score=36.24 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHH
Q 045058 798 RSKANFFRLMTVFSGL 813 (1005)
Q Consensus 798 ~~k~n~~rl~~~~~~~ 813 (1005)
.+..|...|.....-+
T Consensus 193 ~l~~n~~~L~~~~~~~ 208 (395)
T cd05137 193 IIEHNWERLISLTEEI 208 (395)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666655433
No 327
>PRK09458 pspB phage shock protein B; Provisional
Probab=27.50 E-value=1.7e+02 Score=24.40 Aligned_cols=19 Identities=32% Similarity=0.927 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhhh---ccccC
Q 045058 850 LPTVFLYMFLIGIW---NYRYR 868 (1005)
Q Consensus 850 ~p~~~l~~~~~~~~---~~~~~ 868 (1005)
+|++++.+|+..+| +|..+
T Consensus 8 ~PliiF~ifVaPiWL~LHY~sk 29 (75)
T PRK09458 8 IPLTIFVLFVAPIWLWLHYRSK 29 (75)
T ss_pred HhHHHHHHHHHHHHHHHhhccc
Confidence 55555555555555 55543
No 328
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=26.82 E-value=21 Score=35.09 Aligned_cols=22 Identities=32% Similarity=0.726 Sum_probs=0.0
Q ss_pred HhhccccCCchhHHHHHHHHHH
Q 045058 934 LQALISWRDPRATAIFITFCLV 955 (1005)
Q Consensus 934 ~~~l~~w~~p~~t~~~~~~~~~ 955 (1005)
+++++.|++|..|..++.++.+
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~ 22 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILL 22 (169)
T ss_dssp ----------------------
T ss_pred CceeeEecCCCchHHHHHHHHH
Confidence 4678999999999876655555
No 329
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=25.51 E-value=3.1e+02 Score=33.96 Aligned_cols=109 Identities=17% Similarity=0.304 Sum_probs=67.8
Q ss_pred cCCCcceEEEEEEEEecCCCCCCCCCCCCCCCcEEEEEE----CCEEE----EeeeccCCCCceeccEEEEEEe--C-C-
Q 045058 590 LWRPSIGILELGILNAVGLHPMKTRDGRGTSDTYCVAKY----GHKWV----RTRTLVDNLSPKYNEQYTWEVF--D-P- 657 (1005)
Q Consensus 590 ~~~~~~g~l~v~i~~a~~L~~~~~~~~~~~~dpyv~~~~----g~~~~----~T~~~~~t~nP~wne~f~~~v~--~-~- 657 (1005)
+|. .-..++|+++++.++.- ....|-+|.|.. |++.. .|.-+..+.+|.||+..+|++. | |
T Consensus 338 LWd-~~~~frI~l~~is~~n~------~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr 410 (1076)
T KOG0904|consen 338 LWD-LDRPFRIKLVGISKVNL------PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPR 410 (1076)
T ss_pred HHc-CCCceEEEEeeccccCC------CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCCh
Confidence 553 22467888888887652 234466776654 66642 3444445789999998888775 4 3
Q ss_pred CceEEEEEEeCCCc----------CCCCCCCCCcccEEEEEEccc----ccCCCEEeeeEee
Q 045058 658 ATVLTVGVFDNSQL----------GEKSNGNKDLKIGKVRIRIST----LETGRIYTHSYPL 705 (1005)
Q Consensus 658 ~~~l~i~v~d~~~~----------~~~~~~~~d~~lG~~~i~l~~----l~~~~~~~~~~~L 705 (1005)
.+.|-|.||--... +..+..+.+-.||.+.+.|-+ |..|+..-+-|+.
T Consensus 411 ~ArLc~~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~ 472 (1076)
T KOG0904|consen 411 MARLCLAIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPS 472 (1076)
T ss_pred hhhheeeeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCC
Confidence 45677777754210 001134466789999888865 6677766666664
No 330
>PHA01159 hypothetical protein
Probab=23.29 E-value=2.8e+02 Score=25.15 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccCCCCCCc
Q 045058 910 YDRLRSVAGRIQTVVGDVATQGERLQALISWRDPRATAIFITFCLVAALVLFLTPFQVIAALAGFWVMRHPRFRRRLPSV 989 (1005)
Q Consensus 910 ~~~l~~~~~~vQ~~l~~~a~~~e~~~~l~~w~~p~~t~~~~~~~~~~~~v~~~iP~r~i~l~~g~~~~~~P~f~~~~~~~ 989 (1005)
+..++.++.--|..++.+++..+-+++.|-|-.-++-..-+... +..+=+.+---|.++--.|++ +-
T Consensus 5 ~~~L~~I~~~~qt~~dFf~~~~d~i~~~fv~~~~~~i~~~l~~~-I~~i~~sY~~A~~Ll~~iG~~------------s~ 71 (114)
T PHA01159 5 YSALEFIANIGQTFLDFFDVAIDWIKNAFVYGAMWLISVWLDIL-IASIQIAYKIAQLLLEEYGVY------------TM 71 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHH------------HH
Confidence 45567777777888888888877788777663333222111111 111112222233344345555 56
Q ss_pred hhhhhhcCCCC
Q 045058 990 PINFFRRLPAR 1000 (1005)
Q Consensus 990 ~~~~~~r~p~~ 1000 (1005)
+.+.+++|||.
T Consensus 72 i~s~fnaLPse 82 (114)
T PHA01159 72 VESRFNALPSD 82 (114)
T ss_pred HHHHHHhCCHH
Confidence 67777888875
No 331
>KOG4027 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=3.7e+02 Score=25.81 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=44.8
Q ss_pred CCCCcEEEEEE---------CC-e---EeeccccCCCCCC-ceeeEEEEEeccCccccceEEEEEEEeCCCCCCCCcccE
Q 045058 23 GSSSAFVELYF---------DG-Q---RFRTTIKENDLNP-VWNESFYFNISDASKLHYLTLEAYIYNNIGDTNSRSFLG 88 (1005)
Q Consensus 23 g~~dpyv~v~~---------~~-~---~~~T~v~~~t~nP-~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~~d~~lG 88 (1005)
-.+|-||+.++ .| + .+-|...++-.|| +||=.++..........=..|.+.||..| .+++|...|
T Consensus 24 e~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d-~~G~d~v~G 102 (187)
T KOG4027|consen 24 EESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKD-HSGKDCVTG 102 (187)
T ss_pred CCCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCC-cCCcceeee
Confidence 34778888775 11 1 1222222233444 57877776665544344457899999984 567999999
Q ss_pred EEEEeCC
Q 045058 89 KVCLTGN 95 (1005)
Q Consensus 89 ~~~i~l~ 95 (1005)
-..+.+.
T Consensus 103 Yg~~hiP 109 (187)
T KOG4027|consen 103 YGMLHIP 109 (187)
T ss_pred eeeEecC
Confidence 8888743
No 332
>COG4920 Predicted membrane protein [Function unknown]
Probab=21.21 E-value=7.2e+02 Score=25.08 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=9.0
Q ss_pred hhcCCccCCCCCCc
Q 045058 976 VMRHPRFRRRLPSV 989 (1005)
Q Consensus 976 ~~~~P~f~~~~~~~ 989 (1005)
+++.|.-..++|..
T Consensus 158 v~kfp~~~p~~pt~ 171 (249)
T COG4920 158 VFKFPPVAPRIPTN 171 (249)
T ss_pred HhcCCCCcccCccc
Confidence 46667777666653
No 333
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=21.12 E-value=48 Score=40.39 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=0.0
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEECCe-----EeeccccCCCCCCceeeEEEEEeccCccccceEEEEEEEeC-
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFDGQ-----RFRTTIKENDLNPVWNESFYFNISDASKLHYLTLEAYIYNN- 77 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~-----~~~T~v~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~- 77 (1005)
+.+++.+++|.++.. ..+-||...++.. +.+|.++.+|..|.||+.|+.++-... ..++..+++
T Consensus 759 gflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~sq-----S~r~~~~ek~ 828 (1112)
T KOG4269|consen 759 GFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIESQ-----SSRLEKTEKS 828 (1112)
T ss_pred cceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhhcc-----ccchhhhccc
Q ss_pred --------CCCCCCCcccEEEEEeCCcccCCCCceeeeEe
Q 045058 78 --------IGDTNSRSFLGKVCLTGNSFVPLSDSVVLHYP 109 (1005)
Q Consensus 78 --------~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~ 109 (1005)
......+...|...+.+.-....... |+.
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~d~d---~~t 865 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLDPQPHHDAD---WYT 865 (1112)
T ss_pred chHHHhhhccchhhcccccccccccCcccccccc---Ccc
No 334
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=20.62 E-value=2.7e+02 Score=26.73 Aligned_cols=71 Identities=11% Similarity=0.022 Sum_probs=36.3
Q ss_pred cEEEEEEEEeecCCCCCCCCCCCcEEEEEEC---Ce----EeeccccCCC-CC-CceeeEEEEEeccCccccceEEEEEE
Q 045058 4 LKLGVQVVGAHNLLPKDGKGSSSAFVELYFD---GQ----RFRTTIKEND-LN-PVWNESFYFNISDASKLHYLTLEAYI 74 (1005)
Q Consensus 4 ~~l~V~v~~a~~L~~~d~~g~~dpyv~v~~~---~~----~~~T~v~~~t-~n-P~Wne~f~f~v~~~~~~~~~~l~v~V 74 (1005)
-.|.|.|-+.. |. |.....|||+.|++. |. .+.|.+.... .| =.||.+.++...-..-..+..|.|++
T Consensus 13 t~l~v~Iekig-lk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~ 89 (147)
T PF14186_consen 13 TYLSVFIEKIG-LK--DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEF 89 (147)
T ss_dssp -EEEEEEEEEE--T--TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEE
T ss_pred ceEEEEEEEEE-EC--ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEE
Confidence 35666666554 54 555668999999983 21 4667755222 22 34566666554332223457888999
Q ss_pred EeC
Q 045058 75 YNN 77 (1005)
Q Consensus 75 ~d~ 77 (1005)
.|+
T Consensus 90 kH~ 92 (147)
T PF14186_consen 90 KHY 92 (147)
T ss_dssp EEE
T ss_pred Eee
Confidence 887
No 335
>PHA02844 putative transmembrane protein; Provisional
Probab=20.35 E-value=2.4e+02 Score=23.28 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=12.2
Q ss_pred HHHHhHHHHHhhccccC
Q 045058 925 GDVATQGERLQALISWR 941 (1005)
Q Consensus 925 ~~~a~~~e~~~~l~~w~ 941 (1005)
+|..+++|-+++.++=.
T Consensus 18 dDFnnFI~vVksVLtd~ 34 (75)
T PHA02844 18 EDFNNFIDVVKSVLSDD 34 (75)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 56777888888877553
Done!