BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045061
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 140/400 (35%), Gaps = 74/400 (18%)
Query: 15 TPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRR----- 69
TP SE L+ D G +W C +Q+ SSTY+ + C C
Sbjct: 30 TPLVSENLVVDLGGRFLWVDC-------DQNY------VSSTYRPVRCRTSQCSLSGSIA 76
Query: 70 -------PPFRCENGQCV-----HRINYA-GGASASGLVSTETFTFHLKNKLVCVPGVIF 116
P C N C IN A GG A +VS E+ ++V VP IF
Sbjct: 77 CGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIF 136
Query: 117 GCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKS--TAQGLFSYCLVYAYREMEATSILR 174
C+ + + + G+ G + +L Q S + + F+ CL + S++
Sbjct: 137 SCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL---SGSTSSNSVII 193
Query: 175 FGKDA-----NIQRKDMKTIRMFV---------------DRSSHYYLSLQDISVADHRIG 214
FG D NI D KT+ + S Y++ ++ I + +
Sbjct: 194 FGNDPYTFLPNIIVSD-KTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVA 252
Query: 215 FAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEY 274
++ G GG I T T ++ Y+ V F + + R+ + + +
Sbjct: 253 LNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAP-FGA 311
Query: 275 CYRYDSRFRAYASMTFHFDRADFKVEPTYMYF------IFQNEGYFCVAISFSDRN---- 324
C+ D+ + + E ++ N+ C+ + N
Sbjct: 312 CFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTS 371
Query: 325 SVVGAWQQQDTRFVYDLNT------GTIQFVPENCANDHF 358
V+G Q +D +DL T GT+ CAN +F
Sbjct: 372 IVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNF 411
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 84/400 (21%), Positives = 140/400 (35%), Gaps = 74/400 (18%)
Query: 15 TPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRR----- 69
TP SE L+ D G +W C +Q+ SSTY+ + C C
Sbjct: 30 TPLVSENLVVDLGGRFLWVDC-------DQNY------VSSTYRPVRCRTSQCSLSGSIA 76
Query: 70 -------PPFRCENGQCV-----HRINYA-GGASASGLVSTETFTFHLKNKLVCVPGVIF 116
P C N C IN A GG A +VS E+ ++V VP IF
Sbjct: 77 CGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIF 136
Query: 117 GCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKS--TAQGLFSYCLVYAYREMEATSILR 174
C+ + + + G+ G + +L Q S + + F+ CL + S++
Sbjct: 137 SCAPTSLLQNLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCL---SGSTSSNSVII 193
Query: 175 FGKDA-----NIQRKDMKTIRMFV---------------DRSSHYYLSLQDISVADHRIG 214
FG D NI D KT+ + S Y++ ++ I + +
Sbjct: 194 FGNDPYTFLPNIIVSD-KTLTYTPLLTNPVSTSATSTQGEPSVEYFIGVKSIKINSKIVA 252
Query: 215 FAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEY 274
++ G GG I T T ++ Y+ V F + + R+ + + +
Sbjct: 253 LNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAP-FGA 311
Query: 275 CYRYDSRFRAYASMTFHFDRADFKVEPTYMYF------IFQNEGYFCVAISFSDRN---- 324
C+ D+ + + E ++ N+ C+ + N
Sbjct: 312 CFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTS 371
Query: 325 SVVGAWQQQDTRFVYDLNT------GTIQFVPENCANDHF 358
V+G Q +D +DL T GT+ CAN +F
Sbjct: 372 IVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANFNF 411
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 95/239 (39%), Gaps = 40/239 (16%)
Query: 1 HEKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSA----PIFNPNASST 56
++++ Y ++ GTP + ++FDTGS ++W +P C N A ++ + SST
Sbjct: 9 NDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLW---VPSSKCINSKACRAHSMYESSDSST 65
Query: 57 YKRIPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIF 116
YK ENG I Y G S +G S ++ T LV
Sbjct: 66 YK----------------ENG-TFGAIIY-GTGSITGFFSQDSVTI---GDLVVKEQDFI 104
Query: 117 GCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGL-----FSYCLVYAYREMEATS 171
+++ + GILG S S+ QGL FS+ L E E
Sbjct: 105 EATDEADNVFLHRLFDGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGE 164
Query: 172 ILRFGKDANIQRKDMKTIRMFVDRSSHYY--LSLQDISVADHRIGF-APGTFALRRNGT 227
++ G D N R D +V + YY + D+ + D GF APG A +GT
Sbjct: 165 LVFGGLDPNHFRGD----HTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAFADSGT 219
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 122/317 (38%), Gaps = 60/317 (18%)
Query: 11 VLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRP 70
V GTP K L FDTGS +W C NC + ++PN SSTY+
Sbjct: 21 VTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTK-YDPNQSSTYQ------------ 67
Query: 71 PFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGN 130
+G+ I+Y G+SASG+++ + L+ I + F+ N
Sbjct: 68 ----ADGRT-WSISYGDGSSASGILAKDNVNL---GGLLIKGQTIELAKREAASFASGPN 119
Query: 131 IAGILGFSVSPFSLLGQLKS-----TAQGLFSYCLVYAY----REMEATSILRFGKDANI 181
G+LG + + +K+ +QGL S + Y + + G D+
Sbjct: 120 -DGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTK 178
Query: 182 QRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFI 241
+ + T+ +D S ++ I+V +G + T A +G ++DTG +
Sbjct: 179 FKGSLTTVP--IDNSRGWW----GITVDRATVGTS--TVASSFDG----ILDTGTTLLIL 226
Query: 242 QRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEP 301
V R + AS++ + Y A+ + F + A F+V P
Sbjct: 227 PNNIAASVARAY-------------GASDNGDGTYTISCDTSAFKPLVFSINGASFQVSP 273
Query: 302 TYMYF-IFQNEGYFCVA 317
+ F FQ + C+A
Sbjct: 274 DSLVFEEFQGQ---CIA 287
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 11 VLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRP 70
V GTP K L FDTGS +W C NC ++ ++PN SSTY+
Sbjct: 21 VTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSRQTK-YDPNQSSTYQ------------ 67
Query: 71 PFRCENGQCVHRINYAGGASASGLVSTE 98
+G+ I+Y G+SASG+++ +
Sbjct: 68 ----ADGRT-WSISYGDGSSASGILAKD 90
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPI----FNPNASSTYKR 59
Y + V GTP + +LLFDTGS W +P C N + F+P++SST+K
Sbjct: 20 YAIPVSIGTPGQDFYLLFDTGSSDTW---VPHKGCDNSEGCVGKRFFDPSSSSTFKE 73
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 29/139 (20%)
Query: 10 DVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQ---SAPIFNPNASSTYKRIPCDDLI 66
++ GTP ++ +LFDTGS +W +P V C +Q S FNP+ SSTY
Sbjct: 17 EISIGTPPQNFLVLFDTGSSNLW---VPSVYCQSQACTSHSRFNPSESSTYST------- 66
Query: 67 CRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFS 126
NGQ + Y G S +G +T T + + VP FG S + +
Sbjct: 67 ---------NGQ-TFSLQY-GSGSLTGFFGYDTLTV----QSIQVPNQEFGLSENEPGTN 111
Query: 127 FD-GNIAGILGFSVSPFSL 144
F GI+G + S+
Sbjct: 112 FVYAQFDGIMGLAYPALSV 130
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQ---CLPCVNCFNQSAPIFNPNASSTYK 58
Y + V GTP + LLFDTGS W C C F+P+ASST+K
Sbjct: 20 YAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSR--FFDPSASSTFK 72
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 48/241 (19%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPC--VNCFNQSAPIFNPNASSTYKR 59
+ YF T+ + GTP++ ++FDTGS +W + C + C N + FNP SSTY+
Sbjct: 11 DMEYFGTIGI--GTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR--FNPEDSSTYQS 66
Query: 60 IPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGV----- 114
+ V I Y G S +G++ +T V V G+
Sbjct: 67 ----------------TSETV-SITY-GTGSMTGILGYDT---------VQVGGISDTNQ 99
Query: 115 IFGCS-NDNRDFSFDGNIAGILGFSVSPFSLLGQLKS----TAQGLFSYCL--VYAYREM 167
IFG S + F + GILG + S G QGL S L VY +
Sbjct: 100 IFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADD 159
Query: 168 EATSILRFGK-DANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNG 226
++ S++ FG D++ + + + V+ ++ +++ I++ I A G A+ G
Sbjct: 160 QSGSVVIFGGIDSSYYTGSLNWVPVTVE--GYWQITVDSITMNGEAIACAEGCQAIVDTG 217
Query: 227 T 227
T
Sbjct: 218 T 218
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 102/241 (42%), Gaps = 48/241 (19%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPC--VNCFNQSAPIFNPNASSTYKR 59
+ YF T+ + GTP++ ++FDTGS +W + C + C N + FNP SSTY+
Sbjct: 11 DMEYFGTIGI--GTPAQDFTVVFDTGSSNLWVPSVYCSSLACTNHNR--FNPEDSSTYQS 66
Query: 60 IPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGV----- 114
+ V I Y G S +G++ +T V V G+
Sbjct: 67 ----------------TSETV-SITY-GTGSMTGILGYDT---------VQVGGISDTNQ 99
Query: 115 IFGCS-NDNRDFSFDGNIAGILGFSVSPFSLLGQLKS----TAQGLFSYCL--VYAYREM 167
IFG S + F + GILG + S G QGL S L VY +
Sbjct: 100 IFGLSETEPGSFLYYAPFDGILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSADD 159
Query: 168 EATSILRFGK-DANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNG 226
++ S++ FG D++ + + + V+ ++ +++ I++ I A G A+ G
Sbjct: 160 QSGSVVIFGGIDSSYYTGSLNWVPVTVE--GYWQITVDSITMNGEAIACAEGCQAIVDTG 217
Query: 227 T 227
T
Sbjct: 218 T 218
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 44/250 (17%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIP 61
+ YF T+ + GTP++ ++FDTGS +W + C + FNP+ SST++
Sbjct: 55 DTEYFGTIGI--GTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS 112
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGV-----IF 116
+ I Y G S +G++ +T V V G+ IF
Sbjct: 113 QE-----------------LSITY-GTGSMTGILGYDT---------VQVGGISDTNQIF 145
Query: 117 GCS-NDNRDFSFDGNIAGILGFSVSPFSLLGQLKS----TAQGLFSYCLVYAY---REME 168
G S + F + GILG + S G QGL S L Y +
Sbjct: 146 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 205
Query: 169 ATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTG 228
+ +L G D++ + + + V+ ++ ++L I++ I + G A+ GT
Sbjct: 206 GSVVLLGGIDSSYYTGSLNWVPVSVE--GYWQITLDSITMDGETIACSGGCQAIVDTGTS 263
Query: 229 GCMIDTGAIA 238
T AIA
Sbjct: 264 LLTGPTSAIA 273
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 44/250 (17%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIP 61
+ YF T+ + GTP++ ++FDTGS +W + C + FNP+ SST++
Sbjct: 11 DTEYFGTIGI--GTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS 68
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGV-----IF 116
+ I Y G S +G++ +T V V G+ IF
Sbjct: 69 QE-----------------LSITY-GTGSMTGILGYDT---------VQVGGISDTNQIF 101
Query: 117 GCS-NDNRDFSFDGNIAGILGFSVSPFSLLGQLKS----TAQGLFSYCLVYAY---REME 168
G S + F + GILG + S G QGL S L Y +
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 169 ATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTG 228
+ +L G D++ + + + V+ ++ ++L I++ I + G A+ GT
Sbjct: 162 GSVVLLGGIDSSYYTGSLNWVPVSVE--GYWQITLDSITMDGETIACSGGCQAIVDTGTS 219
Query: 229 GCMIDTGAIA 238
T AIA
Sbjct: 220 LLTGPTSAIA 229
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 44/250 (17%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIP 61
+ YF T+ + GTP++ ++FDTGS +W + C + FNP+ SST++
Sbjct: 11 DTEYFGTIGI--GTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS 68
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGV-----IF 116
+ I Y G S +G++ +T V V G+ IF
Sbjct: 69 QE-----------------LSITY-GTGSMTGILGYDT---------VQVGGISDTNQIF 101
Query: 117 GCS-NDNRDFSFDGNIAGILGFSVSPFSLLGQLKS----TAQGLFSYCLVYAY---REME 168
G S + F + GILG + S G QGL S L Y +
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 169 ATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTG 228
+ +L G D++ + + + V+ ++ ++L I++ I + G A+ GT
Sbjct: 162 GSVVLLGGIDSSYYTGSLNWVPVSVE--GYWQITLDSITMDGETIACSGGCQAIVDTGTS 219
Query: 229 GCMIDTGAIA 238
T AIA
Sbjct: 220 LLTGPTSAIA 229
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 44/250 (17%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIP 61
+ YF T+ + GTP++ ++FDTGS +W + C + FNP+ SST++
Sbjct: 55 DTEYFGTIGI--GTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATX 112
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGV-----IF 116
+ I Y G S +G++ +T V V G+ IF
Sbjct: 113 QE-----------------LSITY-GTGSMTGILGYDT---------VQVGGISDTNQIF 145
Query: 117 GCS-NDNRDFSFDGNIAGILGFSVSPFSLLGQLKS----TAQGLFSYCLVYAY---REME 168
G S + F + GILG + S G QGL S L Y +
Sbjct: 146 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 205
Query: 169 ATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTG 228
+ +L G D++ + + + V+ ++ ++L I++ I + G A+ GT
Sbjct: 206 GSVVLLGGIDSSYYTGSLNWVPVSVE--GYWQITLDSITMDGETIACSGGCQAIVDTGTS 263
Query: 229 GCMIDTGAIA 238
T AIA
Sbjct: 264 LLTGPTSAIA 273
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 44/250 (17%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIP 61
+ YF T+ + GTP++ ++FDTGS +W + C + FNP+ SST++
Sbjct: 11 DTEYFGTIGI--GTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS 68
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGV-----IF 116
+ I Y G S +G++ +T V V G+ IF
Sbjct: 69 QE-----------------LSITY-GTGSMTGILGYDT---------VQVGGISDTNQIF 101
Query: 117 GCS-NDNRDFSFDGNIAGILGFSVSPFSLLGQLKS----TAQGLFSYCLVYAY---REME 168
G S + F + GILG + S G QGL S L Y +
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 169 ATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTG 228
+ +L G D++ + + + V+ ++ ++L I++ I + G A+ GT
Sbjct: 162 GSVVLLGGIDSSYYTGSLNWVPVSVE--GYWQITLDSITMDGETIACSGGCQAIVDTGTS 219
Query: 229 GCMIDTGAIA 238
T AIA
Sbjct: 220 LLTGPTSAIA 229
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 44/250 (17%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIP 61
+ YF T+ + GTP++ ++FDTGS +W + C + FNP+ SST++
Sbjct: 11 DTEYFGTIGI--GTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATX 68
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGV-----IF 116
+ I Y G S +G++ +T V V G+ IF
Sbjct: 69 QE-----------------LSITY-GTGSMTGILGYDT---------VQVGGISDTNQIF 101
Query: 117 GCS-NDNRDFSFDGNIAGILGFSVSPFSLLGQLKS----TAQGLFSYCLVYAY---REME 168
G S + F + GILG + S G QGL S L Y +
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 169 ATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTG 228
+ +L G D++ + + + V+ ++ ++L I++ I + G A+ GT
Sbjct: 162 GSVVLLGGIDSSYYTGSLNWVPVSVE--GYWQITLDSITMDGETIACSGGCQAIVDTGTS 219
Query: 229 GCMIDTGAIA 238
T AIA
Sbjct: 220 LLTGPTSAIA 229
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 44/250 (17%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIP 61
+ YF T+ + GTP++ ++FDTGS +W + C + FNP+ SST++
Sbjct: 11 DTEYFGTIGI--GTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATX 68
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGV-----IF 116
+ I Y G S +G++ +T V V G+ IF
Sbjct: 69 QE-----------------LSITY-GTGSMTGILGYDT---------VQVGGISDTNQIF 101
Query: 117 GCS-NDNRDFSFDGNIAGILGFSVSPFSLLGQLKS----TAQGLFSYCLVYAY---REME 168
G S + F + GILG + S G QGL S L Y +
Sbjct: 102 GLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 161
Query: 169 ATSILRFGKDANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTG 228
+ +L G D++ + + + V+ ++ ++L I++ I + G A+ GT
Sbjct: 162 GSVVLLGGIDSSYYTGSLNWVPVSVE--GYWQITLDSITMDGETIACSGGCQAIVDTGTS 219
Query: 229 GCMIDTGAIA 238
T AIA
Sbjct: 220 LLTGPTSAIA 229
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 74/325 (22%), Positives = 123/325 (37%), Gaps = 59/325 (18%)
Query: 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIP 61
+ YF T+ + G+P ++ ++FDTGS +W + C + ++ F P+ SSTY
Sbjct: 22 DMEYFGTISI--GSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYS--- 76
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSND 121
+ GQ I Y G S SG++ + + + + V G FG S
Sbjct: 77 -------------QPGQS-FSIQY-GTGSLSGIIGAD----QVSVEGLTVVGQQFGESVT 117
Query: 122 NRDFSF-DGNIAGILGFSVSPFSLLGQL----KSTAQGLFSYCLVYAYR----EMEATSI 172
+F D GILG ++ G AQ L + Y E A S
Sbjct: 118 EPGQTFVDAEFDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSE 177
Query: 173 LRFGK-DANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCM 231
L FG D + + + V + +++ ++L +I V GT G +
Sbjct: 178 LIFGGYDHSHFSGSLNWVP--VTKQAYWQIALDNIQVG--------GTVMFCSEGC-QAI 226
Query: 232 IDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFH 291
+DTG T + GP + + + + + A D EY + +TF
Sbjct: 227 VDTG---TSLITGPSDKIKQL---------QNAIGAAPVDGEYAVEC-ANLNVMPDVTFT 273
Query: 292 FDRADFKVEPT-YMYFIFQNEGYFC 315
+ + + PT Y F + FC
Sbjct: 274 INGVPYTLSPTAYTLLDFVDGMQFC 298
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 110/312 (35%), Gaps = 63/312 (20%)
Query: 4 NYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPC--VNCFNQSAPIFNPNASSTYKRIP 61
N Y D+ GTP ++ ++ DTGS +W C + CF S ++ ASS+YK
Sbjct: 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYKA-- 67
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSND 121
NG I Y G S G +S +T + + +P F +
Sbjct: 68 --------------NG-TEFAIQY-GTGSLEGYISQDTLSI----GDLTIPKQDFAEATS 107
Query: 122 NRDFSFD-GNIAGILGFS---------VSPFSLLGQLKSTAQGLFSYCLVYAYREMEATS 171
+F G GILG V PF Q + F++ L ++ E
Sbjct: 108 EPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGG 167
Query: 172 ILRFGK-DANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGC 230
FG D + + D+ + V R +++ + + I + D + G
Sbjct: 168 EATFGGIDESKFKGDITWLP--VRRKAYWEVKFEGIGLGDEYAELE----------SHGA 215
Query: 231 MIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFR-AYASMT 289
IDTG + G E++ A + W Y D R +
Sbjct: 216 AIDTGTSLITLPSGLAEMINAEI-------------GAKKGWTGQYTLDCNTRDNLPDLI 262
Query: 290 FHFDRADFKVEP 301
F+F+ +F + P
Sbjct: 263 FNFNGYNFTIGP 274
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 110/312 (35%), Gaps = 63/312 (20%)
Query: 4 NYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPC--VNCFNQSAPIFNPNASSTYKRIP 61
N Y D+ GTP ++ ++ DTGS +W C + CF S ++ ASS+YK
Sbjct: 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYKA-- 67
Query: 62 CDDLICRRPPFRCENGQCVHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSND 121
NG I Y G S G +S +T + + +P F +
Sbjct: 68 --------------NG-TEFAIQY-GTGSLEGYISQDTLSI----GDLTIPKQDFAEATS 107
Query: 122 NRDFSFD-GNIAGILGFS---------VSPFSLLGQLKSTAQGLFSYCLVYAYREMEATS 171
+F G GILG V PF Q + F++ L ++ E
Sbjct: 108 EPGLTFAFGKFDGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGG 167
Query: 172 ILRFGK-DANIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGC 230
FG D + + D+ + V R +++ + + I + D + G
Sbjct: 168 EATFGGIDESKFKGDITWLP--VRRKAYWEVKFEGIGLGDEYAELE----------SHGA 215
Query: 231 MIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFR-AYASMT 289
IDTG + G E++ A + W Y D R +
Sbjct: 216 AIDTGTSLITLPSGLAEMINAEI-------------GAKKGWTGQYTLDCNTRDNLPDLI 262
Query: 290 FHFDRADFKVEP 301
F+F+ +F + P
Sbjct: 263 FNFNGYNFTIGP 274
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 3 KNYF---YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPC---VNCFNQSAPIFNPNASST 56
KNY Y ++ GTP + ++FDTGS +W C + C+ S + ASST
Sbjct: 47 KNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSR--YKAGASST 104
Query: 57 YKR 59
YK+
Sbjct: 105 YKK 107
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis
In Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis
In Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis
In Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis
In Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis
In Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis
In Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis
In Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis
In Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIW-----TQCLPCVNCFNQSAPIFNPNASSTYKRI 60
Y V G+ + + ++ DTGS W QC V+C +S+ F P++SS+YK +
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDC--KSSGTFTPSSSSSYKNL 70
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3
Mutant, Mvv
Length = 329
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 4 NYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPC--VNCFNQSAPIFNPNASSTYK 58
N Y D+ GTP ++ ++ DTGS +W C + CF S ++ ASS+YK
Sbjct: 12 NAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSK--YDHEASSSYK 66
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%)
Query: 11 VLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRI 60
+ GTP + ++FDTGS +W + C + ++ F+P SST++ +
Sbjct: 17 IYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNL 66
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 11 VLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRI 60
+ GTP + +LFDTGS W + C + ++ F+P SST++ +
Sbjct: 20 IYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 11 VLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRI 60
+ GTP + +LFDTGS W + C + ++ F+P SST++ +
Sbjct: 20 IYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNL 69
>pdb|3HUH|A Chain A, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|B Chain B, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|C Chain C, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
pdb|3HUH|D Chain D, The Structure Of Biphenyl-2,3-Diol 1,2-Dioxygenase
Iii-Related Protein From Salmonella Typhimurium
Length = 152
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 179 ANIQRKDMKTIRMFVDRSSHYYLSLQDISVA----DHRIGFAPGTFALRRNG 226
A+++ K ++I+M +DR H L++ DIS + +GF+ TF R
Sbjct: 7 ASLKYKHHESIQMIIDRIDHLVLTVSDISTTIRFYEEVLGFSAVTFKQNRKA 58
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence
Of A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 1 HEKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCV--NCFNQSAPIFNPNASSTY 57
+E + Y + GTP +S ++FDTGS +W C C N + F P SSTY
Sbjct: 8 NEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNK--FKPRQSSTY 64
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
Length = 97
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 3 KNYF---YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPC----VNCFNQSAPIFNPNASS 55
KNY Y ++ GTP + ++FDTGS +W + C + C+ +N + SS
Sbjct: 8 KNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHK--YNSDKSS 65
Query: 56 TY 57
TY
Sbjct: 66 TY 67
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSA--PIFNPNASSTYK 58
Y ++ GTP ++ ++FDTGS +W C + +F+ + SS+YK
Sbjct: 63 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK 116
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of
The "c" Ring
Length = 333
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSA--PIFNPNASSTYK 58
Y ++ GTP ++ ++FDTGS +W C + +F+ + SS+YK
Sbjct: 13 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK 66
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSA--PIFNPNASSTYK 58
Y ++ GTP ++ ++FDTGS +W C + +F+ + SS+YK
Sbjct: 17 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK 70
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSA--PIFNPNASSTYK 58
Y ++ GTP ++ ++FDTGS +W C + +F+ + SS+YK
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK 73
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSA--PIFNPNASSTYK 58
Y ++ GTP ++ ++FDTGS +W C + +F+ + SS+YK
Sbjct: 16 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK 69
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSA--PIFNPNASSTYK 58
Y ++ GTP ++ ++FDTGS +W C + +F+ + SS+YK
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK 73
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSA--PIFNPNASSTYK 58
Y ++ GTP ++ ++FDTGS +W C + +F+ + SS+YK
Sbjct: 20 YYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYK 73
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 10 DVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSA--PIFNPNASSTYKR 59
++ GTP ++ ++FDTGS +W C + +F+ + SS+YK
Sbjct: 23 EIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKH 74
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin
Inhibitor-Aspartic Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description
Of The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRI 60
Y V GTP+++ L FDTGS +W I+ P+ S+T K +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLL 70
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRI 60
Y V GTP+++ L FDTGS +W I+ P+ S+T K +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLL 70
>pdb|1EAI|C Chain C, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
pdb|1EAI|D Chain D, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With
Porcine Elastase
Length = 61
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 15/55 (27%)
Query: 31 IWTQCLPC-VNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRIN 84
+WT+C C + C P+ ++ PC L+CRRP C G+ + R N
Sbjct: 10 VWTECTGCEMKC--------GPDENT-----PCP-LMCRRPSCECSPGRGMRRTN 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,345,647
Number of Sequences: 62578
Number of extensions: 471403
Number of successful extensions: 974
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 934
Number of HSP's gapped (non-prelim): 48
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)