Query 045061
Match_columns 359
No_of_seqs 114 out of 1196
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 09:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1E-61 2.2E-66 460.2 39.4 346 2-355 80-430 (431)
2 cd05478 pepsin_A Pepsin A, asp 100.0 2.8E-56 6.2E-61 410.0 30.2 296 3-350 7-317 (317)
3 PTZ00165 aspartyl protease; Pr 100.0 7.7E-56 1.7E-60 421.9 32.5 304 3-356 117-451 (482)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 1.6E-55 3.4E-60 406.7 30.7 302 3-350 3-325 (325)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.6E-55 5.5E-60 404.9 31.5 300 5-354 2-326 (326)
6 cd05477 gastricsin Gastricsins 100.0 3.2E-55 7E-60 403.4 31.7 299 4-351 1-318 (318)
7 KOG1339 Aspartyl protease [Pos 100.0 6.5E-55 1.4E-59 411.6 34.2 341 3-354 43-397 (398)
8 cd05486 Cathespin_E Cathepsin 100.0 2.9E-55 6.3E-60 403.2 28.6 297 7-350 1-316 (316)
9 cd05472 cnd41_like Chloroplast 100.0 9.2E-54 2E-58 390.5 33.2 290 6-353 1-299 (299)
10 cd05488 Proteinase_A_fungi Fun 100.0 2.1E-54 4.5E-59 398.0 29.1 296 3-350 7-320 (320)
11 cd05487 renin_like Renin stimu 100.0 3.8E-54 8.2E-59 397.3 30.6 301 3-351 5-326 (326)
12 cd06098 phytepsin Phytepsin, a 100.0 1.3E-53 2.9E-58 391.9 31.0 289 3-350 7-317 (317)
13 cd05485 Cathepsin_D_like Cathe 100.0 2.4E-53 5.2E-58 392.0 30.4 301 3-350 8-329 (329)
14 PTZ00147 plasmepsin-1; Provisi 100.0 3.7E-53 8E-58 400.6 31.9 297 3-352 136-450 (453)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.9E-52 4.1E-57 394.9 31.1 296 4-352 136-449 (450)
16 cd05473 beta_secretase_like Be 100.0 8.3E-51 1.8E-55 380.4 30.9 318 6-357 3-351 (364)
17 cd05476 pepsin_A_like_plant Ch 100.0 1E-50 2.2E-55 363.9 29.7 260 6-353 1-265 (265)
18 cd06097 Aspergillopepsin_like 100.0 5E-51 1.1E-55 368.5 26.1 265 7-350 1-278 (278)
19 cd05475 nucellin_like Nucellin 100.0 8.7E-50 1.9E-54 359.0 31.0 257 5-353 1-273 (273)
20 cd05489 xylanase_inhibitor_I_l 100.0 2.6E-49 5.6E-54 367.6 32.4 319 13-351 2-361 (362)
21 PF00026 Asp: Eukaryotic aspar 100.0 2.7E-50 5.9E-55 371.0 19.7 297 6-351 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 4.2E-48 9.2E-53 352.9 26.2 271 5-351 1-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 2.5E-45 5.5E-50 332.5 28.1 270 7-350 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 3.3E-29 7.3E-34 207.2 14.7 158 7-177 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 4.5E-25 9.8E-30 182.5 14.7 151 198-350 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 3.8E-23 8.3E-28 159.8 12.6 106 9-137 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.1 1.1E-05 2.5E-10 60.0 7.5 93 5-138 1-93 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.3 0.0017 3.6E-08 50.7 8.6 95 3-138 8-102 (121)
29 PF13650 Asp_protease_2: Aspar 96.7 0.019 4.2E-07 41.7 9.0 89 9-138 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 96.1 0.016 3.6E-07 45.3 6.1 95 229-348 29-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.1 0.27 5.9E-06 38.4 9.5 33 5-39 15-47 (124)
32 PF08284 RVP_2: Retroviral asp 95.0 0.018 4E-07 45.7 2.7 99 229-351 34-132 (135)
33 cd05484 retropepsin_like_LTR_2 92.8 0.14 3.1E-06 37.5 3.5 29 7-37 1-29 (91)
34 COG3577 Predicted aspartyl pro 91.9 0.4 8.8E-06 40.2 5.5 102 2-149 101-202 (215)
35 PF13975 gag-asp_proteas: gag- 91.4 0.42 9E-06 33.3 4.4 34 3-38 5-38 (72)
36 PF11925 DUF3443: Protein of u 89.5 6.5 0.00014 36.4 11.4 174 18-244 39-272 (370)
37 TIGR02281 clan_AA_DTGA clan AA 89.3 1 2.3E-05 34.9 5.5 36 196-249 9-44 (121)
38 PF00077 RVP: Retroviral aspar 86.5 1.1 2.4E-05 33.1 4.1 28 8-37 7-34 (100)
39 TIGR03698 clan_AA_DTGF clan AA 86.1 1.8 3.8E-05 32.8 4.9 24 323-346 84-107 (107)
40 PF13650 Asp_protease_2: Aspar 85.1 1.1 2.5E-05 32.1 3.4 21 229-249 11-31 (90)
41 PF13975 gag-asp_proteas: gag- 84.0 1.9 4E-05 30.0 3.9 21 229-249 21-41 (72)
42 PF12384 Peptidase_A2B: Ty3 tr 82.7 3.2 6.9E-05 33.7 5.1 22 229-250 47-68 (177)
43 cd05484 retropepsin_like_LTR_2 81.5 1.9 4.2E-05 31.3 3.4 22 229-250 13-34 (91)
44 cd06095 RP_RTVL_H_like Retrope 80.8 2.2 4.7E-05 30.8 3.4 27 10-38 2-28 (86)
45 PF02160 Peptidase_A3: Caulifl 79.8 3.3 7.2E-05 35.0 4.5 96 229-350 22-117 (201)
46 cd05483 retropepsin_like_bacte 77.4 4.2 9.1E-05 29.4 4.1 21 229-249 15-35 (96)
47 cd06095 RP_RTVL_H_like Retrope 76.3 3.3 7.1E-05 29.8 3.2 21 229-249 11-31 (86)
48 cd05482 HIV_retropepsin_like R 75.0 4.4 9.5E-05 29.4 3.5 25 10-36 2-26 (87)
49 PF00077 RVP: Retroviral aspar 68.4 5.6 0.00012 29.3 2.9 18 229-246 18-35 (100)
50 PF12384 Peptidase_A2B: Ty3 tr 64.3 9.7 0.00021 31.0 3.6 29 8-36 34-62 (177)
51 cd05481 retropepsin_like_LTR_1 62.0 8 0.00017 28.4 2.6 23 229-251 12-34 (93)
52 PF09668 Asp_protease: Asparty 61.1 4.3 9.4E-05 31.6 1.1 36 4-41 22-57 (124)
53 PF09668 Asp_protease: Asparty 56.3 12 0.00026 29.1 2.8 29 205-248 28-56 (124)
54 cd05480 NRIP_C NRIP_C; putativ 56.2 82 0.0018 23.5 7.2 30 314-343 72-103 (103)
55 COG5550 Predicted aspartyl pro 53.5 7.8 0.00017 29.9 1.3 22 229-250 28-50 (125)
56 COG3577 Predicted aspartyl pro 51.6 22 0.00047 30.2 3.8 43 189-249 96-138 (215)
57 KOG0012 DNA damage inducible p 51.0 80 0.0017 29.3 7.5 41 313-353 306-348 (380)
58 TIGR03698 clan_AA_DTGF clan AA 39.9 41 0.00088 25.3 3.5 64 9-104 2-70 (107)
59 cd06094 RP_Saci_like RP_Saci_l 37.2 19 0.0004 26.2 1.1 22 227-248 9-30 (89)
60 cd06094 RP_Saci_like RP_Saci_l 27.1 2.5E+02 0.0054 20.4 8.1 52 18-104 8-59 (89)
61 cd06097 Aspergillopepsin_like 25.6 67 0.0014 28.6 3.0 18 229-246 15-32 (278)
62 PF08284 RVP_2: Retroviral asp 25.5 1.5E+02 0.0032 23.3 4.6 27 7-35 22-48 (135)
63 cd06096 Plasmepsin_5 Plasmepsi 24.6 62 0.0013 29.7 2.6 18 229-246 18-35 (326)
64 cd05475 nucellin_like Nucellin 24.0 91 0.002 27.7 3.6 32 5-36 157-194 (273)
65 cd06098 phytepsin Phytepsin, a 24.0 88 0.0019 28.5 3.5 31 5-35 188-226 (317)
66 PF03419 Peptidase_U4: Sporula 20.8 1.2E+02 0.0026 27.5 3.6 29 3-31 154-182 (293)
67 TIGR02854 spore_II_GA sigma-E 20.6 1.2E+02 0.0025 27.5 3.5 28 3-30 155-182 (288)
68 cd05471 pepsin_like Pepsin-lik 20.6 98 0.0021 27.2 3.1 35 4-38 179-221 (283)
69 cd05474 SAP_like SAPs, pepsin- 20.2 87 0.0019 28.0 2.7 14 229-242 17-30 (295)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1e-61 Score=460.16 Aligned_cols=346 Identities=30% Similarity=0.572 Sum_probs=288.6
Q ss_pred CCcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCC--CCCC-CCC
Q 045061 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPP--FRCE-NGQ 78 (359)
Q Consensus 2 ~~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~--~~c~-~~~ 78 (359)
+++++|+++|.||||||++.|++||||+++||+|.+|..|..+.++.|||++|+||+...|.++.|.... ..|. ++.
T Consensus 80 ~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~ 159 (431)
T PLN03146 80 SNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENT 159 (431)
T ss_pred cCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCC
Confidence 4678999999999999999999999999999999999999988899999999999999999999998732 2475 456
Q ss_pred ceEEEEeCCCCeEEEEEEEEEEEEecCC-ceeecCceEEEceeCCCCCCCCCCcceEEecCCCCCchHHhhhhcCCCceE
Q 045061 79 CVHRINYAGGASASGLVSTETFTFHLKN-KLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFS 157 (359)
Q Consensus 79 ~~~~~~y~~g~~~~G~~~~D~v~i~~~~-~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~fs 157 (359)
|.|.+.|++|+.+.|.+++|+|+|++.. ..+.++++.|||++...+ .+....+||||||+...|++.|+.....++||
T Consensus 160 c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g-~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FS 238 (431)
T PLN03146 160 CTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGG-TFDEKGSGIVGLGGGPLSLISQLGSSIGGKFS 238 (431)
T ss_pred CeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCC-CccCCCceeEecCCCCccHHHHhhHhhCCcEE
Confidence 9999999999878999999999998642 235688999999998776 54346899999999999999998865567999
Q ss_pred EeccccCCCCCcceeEEECCCCccCCCCceeeeeecCC-CCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecCC
Q 045061 158 YCLVYAYREMEATSILRFGKDANIQRKDMKTIRMFVDR-SSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGA 236 (359)
Q Consensus 158 ~~l~~~~~~~~~~g~l~~Gg~d~~~~~~i~~~~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt 236 (359)
+||.+...+....|.|+||+........+.|+|++... ..+|.|.|++|+||++++.++...+. ..+.+.+||||||
T Consensus 239 ycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGT 316 (431)
T PLN03146 239 YCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGT 316 (431)
T ss_pred EECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCc
Confidence 99976443334589999999633333458999998532 57899999999999999887665543 2334579999999
Q ss_pred cccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcCCCeEEE
Q 045061 237 IATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGYFCV 316 (359)
Q Consensus 237 ~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~~~~~C~ 316 (359)
++++||+++|++|.+++...+.... ..........|+.... ...+|+|+|+|+|+.+.|+|++|++... ++..|+
T Consensus 317 t~t~Lp~~~y~~l~~~~~~~~~~~~---~~~~~~~~~~C~~~~~-~~~~P~i~~~F~Ga~~~l~~~~~~~~~~-~~~~Cl 391 (431)
T PLN03146 317 TLTLLPSDFYSELESAVEEAIGGER---VSDPQGLLSLCYSSTS-DIKLPIITAHFTGADVKLQPLNTFVKVS-EDLVCF 391 (431)
T ss_pred cceecCHHHHHHHHHHHHHHhcccc---CCCCCCCCCccccCCC-CCCCCeEEEEECCCeeecCcceeEEEcC-CCcEEE
Confidence 9999999999999999988775321 1122234578987432 2479999999999999999999999765 567899
Q ss_pred EEEcCCCceeecccceeeeEEEEECCCCEEEEeeCCCCC
Q 045061 317 AISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCAN 355 (359)
Q Consensus 317 ~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~ 355 (359)
++....+.+|||+.|||++|+|||.+++|||||+.+|..
T Consensus 392 ~~~~~~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 392 AMIPTSSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred EEecCCCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 988766779999999999999999999999999999975
No 2
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.8e-56 Score=410.03 Aligned_cols=296 Identities=19% Similarity=0.304 Sum_probs=253.5
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEE
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHR 82 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~ 82 (359)
.+..|+++|.||||||++.|+|||||+++||++..|..|.|..++.|+|++|+|++... +.+.
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~-----------------~~~~ 69 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTG-----------------QPLS 69 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCC-----------------cEEE
Confidence 37899999999999999999999999999999999988777888999999999999877 6899
Q ss_pred EEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCC--CCcceEEecCCCCC------chHHhhhhc---
Q 045061 83 INYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFD--GNIAGILGFSVSPF------SLLGQLKST--- 151 (359)
Q Consensus 83 ~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GilGLg~~~~------s~~~ql~~~--- 151 (359)
+.|++|+ +.|.+++|+|+|+ ++.++++.||++....+ .+. ...+||||||++.. +++.||.+.
T Consensus 70 ~~yg~gs-~~G~~~~D~v~ig----~~~i~~~~fg~~~~~~~-~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i 143 (317)
T cd05478 70 IQYGTGS-MTGILGYDTVQVG----GISDTNQIFGLSETEPG-SFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLV 143 (317)
T ss_pred EEECCce-EEEEEeeeEEEEC----CEEECCEEEEEEEecCc-cccccccccceeeeccchhcccCCCCHHHHHHhCCCC
Confidence 9999998 8999999999999 47899999999988765 332 35899999998754 366777653
Q ss_pred CCCceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcE
Q 045061 152 AQGLFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGC 230 (359)
Q Consensus 152 ~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ 230 (359)
.+++||+||.+.. ...|.|+|||+|. ++.+++.|+|+.. ..+|.|.+++++|+++.+..... ..+
T Consensus 144 ~~~~FS~~L~~~~---~~~g~l~~Gg~d~~~~~g~l~~~p~~~--~~~w~v~l~~v~v~g~~~~~~~~---------~~~ 209 (317)
T cd05478 144 SQDLFSVYLSSNG---QQGSVVTFGGIDPSYYTGSLNWVPVTA--ETYWQITVDSVTINGQVVACSGG---------CQA 209 (317)
T ss_pred CCCEEEEEeCCCC---CCCeEEEEcccCHHHccCceEEEECCC--CcEEEEEeeEEEECCEEEccCCC---------CEE
Confidence 4689999999753 4579999999994 5889999999987 78999999999999998754322 379
Q ss_pred EEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcC
Q 045061 231 MIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQN 310 (359)
Q Consensus 231 iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~ 310 (359)
+|||||+++++|++++++|++++..... ....+.++|+... .+|.|+|.|+|+.++|+|++|+...
T Consensus 210 iiDTGts~~~lp~~~~~~l~~~~~~~~~--------~~~~~~~~C~~~~----~~P~~~f~f~g~~~~i~~~~y~~~~-- 275 (317)
T cd05478 210 IVDTGTSLLVGPSSDIANIQSDIGASQN--------QNGEMVVNCSSIS----SMPDVVFTINGVQYPLPPSAYILQD-- 275 (317)
T ss_pred EECCCchhhhCCHHHHHHHHHHhCCccc--------cCCcEEeCCcCcc----cCCcEEEEECCEEEEECHHHheecC--
Confidence 9999999999999999999998855321 1244668998765 7999999999999999999999864
Q ss_pred CCeEEEE-EEcCC--CceeecccceeeeEEEEECCCCEEEEee
Q 045061 311 EGYFCVA-ISFSD--RNSVVGAWQQQDTRFVYDLNTGTIQFVP 350 (359)
Q Consensus 311 ~~~~C~~-~~~~~--~~~iLG~~fl~~~y~vfD~~~~~igfa~ 350 (359)
...|+. +...+ +.||||.+|||++|+|||++++|||||+
T Consensus 276 -~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 -QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred -CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 468975 55543 5799999999999999999999999996
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=7.7e-56 Score=421.86 Aligned_cols=304 Identities=19% Similarity=0.302 Sum_probs=250.1
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEE
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHR 82 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~ 82 (359)
.|.+|+++|+||||||+|.|++||||+++||++..|..|.|..++.||+++|+||+...+.. ....+.
T Consensus 117 ~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~------------~~~~~~ 184 (482)
T PTZ00165 117 HNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGD------------ESAETY 184 (482)
T ss_pred cCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCC------------ccceEE
Confidence 47899999999999999999999999999999999988777889999999999999843211 012577
Q ss_pred EEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCC-CCcceEEecCCCCC---------chHHhhhhc-
Q 045061 83 INYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFD-GNIAGILGFSVSPF---------SLLGQLKST- 151 (359)
Q Consensus 83 ~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~---------s~~~ql~~~- 151 (359)
+.|++|+ +.|.++.|+|+|+ ++.++++.||+++..+...+. ..+|||||||++.. +++.+|.+.
T Consensus 185 i~YGsGs-~~G~l~~DtV~ig----~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qg 259 (482)
T PTZ00165 185 IQYGTGE-CVLALGKDTVKIG----GLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQN 259 (482)
T ss_pred EEeCCCc-EEEEEEEEEEEEC----CEEEccEEEEEEEeccccccccccccceeecCCCcccccccCCCCCHHHHHHHcC
Confidence 9999998 8899999999999 589999999999987651222 37899999999864 245555542
Q ss_pred --CCCceEEeccccCCCCCcceeEEECCCCcc-C--CCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCC
Q 045061 152 --AQGLFSYCLVYAYREMEATSILRFGKDANI-Q--RKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNG 226 (359)
Q Consensus 152 --~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~-~--~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ 226 (359)
.+++||+||.+.. ...|.|+|||+|+. + .+++.|+|+.. ..+|.+.+++|+|+++.+.....
T Consensus 260 li~~~~FS~yL~~~~---~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~--~~yW~i~l~~i~vgg~~~~~~~~-------- 326 (482)
T PTZ00165 260 LLKRNIFSFYMSKDL---NQPGSISFGSADPKYTLEGHKIWWFPVIS--TDYWEIEVVDILIDGKSLGFCDR-------- 326 (482)
T ss_pred CcccceEEEEeccCC---CCCCEEEeCCcCHHHcCCCCceEEEEccc--cceEEEEeCeEEECCEEeeecCC--------
Confidence 5789999997643 45799999999965 3 46899999998 78999999999999987654222
Q ss_pred CCcEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCc-----EEEEcC
Q 045061 227 TGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRA-----DFKVEP 301 (359)
Q Consensus 227 ~~~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~-----~~~i~~ 301 (359)
...+|+||||+++.+|++++++|.+++... .+|+..+ .+|+|+|.|+|. .+.++|
T Consensus 327 ~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----------------~~C~~~~----~lP~itf~f~g~~g~~v~~~l~p 386 (482)
T PTZ00165 327 KCKAAIDTGSSLITGPSSVINPLLEKIPLE----------------EDCSNKD----SLPRISFVLEDVNGRKIKFDMDP 386 (482)
T ss_pred ceEEEEcCCCccEeCCHHHHHHHHHHcCCc----------------ccccccc----cCCceEEEECCCCCceEEEEEch
Confidence 147999999999999999999999887421 3788765 899999999864 899999
Q ss_pred CceEEEE---cCCCeEEE-EEEcCC------CceeecccceeeeEEEEECCCCEEEEeeCCCCCc
Q 045061 302 TYMYFIF---QNEGYFCV-AISFSD------RNSVVGAWQQQDTRFVYDLNTGTIQFVPENCAND 356 (359)
Q Consensus 302 ~~y~~~~---~~~~~~C~-~~~~~~------~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~~ 356 (359)
++|+++. ...+..|+ ++...+ +.||||++|||++|+|||.+++|||||+++|...
T Consensus 387 ~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 387 EDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred HHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 9999974 22456895 566422 4789999999999999999999999999987543
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.6e-55 Score=406.65 Aligned_cols=302 Identities=17% Similarity=0.244 Sum_probs=247.8
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCC--CCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCce
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNC--FNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCV 80 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c--~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~ 80 (359)
.|.+|+++|.||||||++.|++||||+++||++..|..| .|..++.|+|++|+|++... +.
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~-----------------~~ 65 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNG-----------------TE 65 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCC-----------------cE
Confidence 478999999999999999999999999999999999742 34567899999999999855 68
Q ss_pred EEEEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCC-CCcceEEecCCCCCc------hHHhhhh---
Q 045061 81 HRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFD-GNIAGILGFSVSPFS------LLGQLKS--- 150 (359)
Q Consensus 81 ~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~s------~~~ql~~--- 150 (359)
+.+.|++|+ +.|.+++|+|+|+ ++.++++.||+++...+..+. ...+||||||++..+ ++.+|.+
T Consensus 66 ~~i~Yg~G~-~~G~~~~D~v~~g----~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~ 140 (325)
T cd05490 66 FAIQYGSGS-LSGYLSQDTVSIG----GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKL 140 (325)
T ss_pred EEEEECCcE-EEEEEeeeEEEEC----CEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCC
Confidence 999999997 8999999999999 478999999999887651222 378999999997654 4455554
Q ss_pred cCCCceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCc
Q 045061 151 TAQGLFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGG 229 (359)
Q Consensus 151 ~~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 229 (359)
+.+++||+||.+.. +....|.|+|||+|+ ++.+++.|+|+.. ..+|.|++++|+|++....... ...
T Consensus 141 i~~~~FS~~L~~~~-~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~--~~~w~v~l~~i~vg~~~~~~~~---------~~~ 208 (325)
T cd05490 141 VEQNVFSFYLNRDP-DAQPGGELMLGGTDPKYYTGDLHYVNVTR--KAYWQIHMDQVDVGSGLTLCKG---------GCE 208 (325)
T ss_pred CCCCEEEEEEeCCC-CCCCCCEEEECccCHHHcCCceEEEEcCc--ceEEEEEeeEEEECCeeeecCC---------CCE
Confidence 25789999998532 123479999999994 5889999999987 7899999999999977432211 247
Q ss_pred EEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEc
Q 045061 230 CMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQ 309 (359)
Q Consensus 230 ~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~ 309 (359)
++|||||+++++|++++++|.+++.+. + . ....+.++|+... .+|+|+|.|+|+.++|+|++|+++..
T Consensus 209 aiiDSGTt~~~~p~~~~~~l~~~~~~~---~---~--~~~~~~~~C~~~~----~~P~i~f~fgg~~~~l~~~~y~~~~~ 276 (325)
T cd05490 209 AIVDTGTSLITGPVEEVRALQKAIGAV---P---L--IQGEYMIDCEKIP----TLPVISFSLGGKVYPLTGEDYILKVS 276 (325)
T ss_pred EEECCCCccccCCHHHHHHHHHHhCCc---c---c--cCCCEEecccccc----cCCCEEEEECCEEEEEChHHeEEecc
Confidence 999999999999999999999988542 1 1 1245678999765 79999999999999999999999765
Q ss_pred C-CCeEEEE-EEcC------CCceeecccceeeeEEEEECCCCEEEEee
Q 045061 310 N-EGYFCVA-ISFS------DRNSVVGAWQQQDTRFVYDLNTGTIQFVP 350 (359)
Q Consensus 310 ~-~~~~C~~-~~~~------~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 350 (359)
. ....|+. +... .+.||||+.|||++|+|||++++|||||+
T Consensus 277 ~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 277 QRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 3 2368974 5431 24789999999999999999999999996
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.6e-55 Score=404.88 Aligned_cols=300 Identities=23% Similarity=0.388 Sum_probs=247.3
Q ss_pred ceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEE
Q 045061 5 YFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRIN 84 (359)
Q Consensus 5 ~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~ 84 (359)
++|+++|.||||||++.|+|||||+++||+|..|..|..+.++.|+|++|+|++.+.|++..|.. ...|.++.|.|.+.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-~~~~~~~~~~~~i~ 80 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-CLSCLNNKCEYSIS 80 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccc-cCcCCCCcCcEEEE
Confidence 68999999999999999999999999999999999998888899999999999999999999954 24577788999999
Q ss_pred eCCCCeEEEEEEEEEEEEecCCce---eecCceEEEceeCCCCCCCC-CCcceEEecCCCCCch----HHhhhh---c--
Q 045061 85 YAGGASASGLVSTETFTFHLKNKL---VCVPGVIFGCSNDNRDFSFD-GNIAGILGFSVSPFSL----LGQLKS---T-- 151 (359)
Q Consensus 85 y~~g~~~~G~~~~D~v~i~~~~~~---~~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~s~----~~ql~~---~-- 151 (359)
|++|+.+.|.+++|+|+|++.... ....++.|||+....+ .+. ...+||||||+...+. ..++.+ .
T Consensus 81 Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~ 159 (326)
T cd06096 81 YSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKLK 159 (326)
T ss_pred ECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccccCchhHHHHHhccccc
Confidence 999987999999999999854210 1123578999988765 432 4789999999986431 111111 1
Q ss_pred CCCceEEeccccCCCCCcceeEEECCCCc-cCC----------CCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCcc
Q 045061 152 AQGLFSYCLVYAYREMEATSILRFGKDAN-IQR----------KDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTF 220 (359)
Q Consensus 152 ~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~----------~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 220 (359)
..++||+||.+. .|.|+|||+|+ .+. +++.|+|+.. ..+|.|.+++|+|+++......
T Consensus 160 ~~~~FS~~l~~~------~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~--~~~y~v~l~~i~vg~~~~~~~~--- 228 (326)
T cd06096 160 KDKIFSICLSED------GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR--KYYYYVKLEGLSVYGTTSNSGN--- 228 (326)
T ss_pred CCceEEEEEcCC------CeEEEECccChhhhcccccccccccCCceEEeccC--CceEEEEEEEEEEcccccceec---
Confidence 248999999862 59999999994 344 7899999998 6899999999999987511100
Q ss_pred ccccCCCCcEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEc-CcEEEE
Q 045061 221 ALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFD-RADFKV 299 (359)
Q Consensus 221 ~~~~~~~~~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~-g~~~~i 299 (359)
.....++|||||++++||++++++|.+++ |+|+|.|+ |+.+++
T Consensus 229 ----~~~~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------P~i~~~f~~g~~~~i 272 (326)
T cd06096 229 ----TKGLGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------PTITIIFENNLKIDW 272 (326)
T ss_pred ----ccCCCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------CcEEEEEcCCcEEEE
Confidence 12257999999999999999999988664 89999998 799999
Q ss_pred cCCceEEEEcCCCeEEEEEEcCCCceeecccceeeeEEEEECCCCEEEEeeCCCC
Q 045061 300 EPTYMYFIFQNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCA 354 (359)
Q Consensus 300 ~~~~y~~~~~~~~~~C~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~ 354 (359)
+|++|++... ....|+.+....+.+|||++|||++|+|||++++|||||+++|.
T Consensus 273 ~p~~y~~~~~-~~~c~~~~~~~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 273 KPSSYLYKKE-SFWCKGGEKSVSNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred CHHHhccccC-CceEEEEEecCCCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 9999999764 33455666666678999999999999999999999999999995
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=3.2e-55 Score=403.36 Aligned_cols=299 Identities=19% Similarity=0.335 Sum_probs=252.5
Q ss_pred cceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEE
Q 045061 4 NYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRI 83 (359)
Q Consensus 4 ~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~ 83 (359)
|..|+++|.||||||++.|+|||||+++||++..|..+.|..++.|||++|+|++..+ |.|.+
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~-----------------~~~~~ 63 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNG-----------------ETFSL 63 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECC-----------------cEEEE
Confidence 5789999999999999999999999999999999987666778899999999999876 79999
Q ss_pred EeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCC-CCCcceEEecCCCC------CchHHhhhhc---CC
Q 045061 84 NYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSF-DGNIAGILGFSVSP------FSLLGQLKST---AQ 153 (359)
Q Consensus 84 ~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GilGLg~~~------~s~~~ql~~~---~~ 153 (359)
.|++|+ +.|.+++|+|+++ ++.++++.||+++...+..+ ....+||||||++. .+++.||.+. .+
T Consensus 64 ~Yg~Gs-~~G~~~~D~i~~g----~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~ 138 (318)
T cd05477 64 QYGSGS-LTGIFGYDTVTVQ----GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQA 138 (318)
T ss_pred EECCcE-EEEEEEeeEEEEC----CEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCC
Confidence 999998 8999999999999 47899999999998754122 23679999999863 4577787653 57
Q ss_pred CceEEeccccCCCCCcceeEEECCCC-ccCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEE
Q 045061 154 GLFSYCLVYAYREMEATSILRFGKDA-NIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMI 232 (359)
Q Consensus 154 ~~fs~~l~~~~~~~~~~g~l~~Gg~d-~~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 232 (359)
++||+||.+.. ....|.|+|||+| +.+.+++.|+|+.. ..+|.|.+++|+|+++++..... ...+||
T Consensus 139 ~~FS~~L~~~~--~~~~g~l~fGg~d~~~~~g~l~~~pv~~--~~~w~v~l~~i~v~g~~~~~~~~--------~~~~ii 206 (318)
T cd05477 139 PIFSFYLSGQQ--GQQGGELVFGGVDNNLYTGQIYWTPVTS--ETYWQIGIQGFQINGQATGWCSQ--------GCQAIV 206 (318)
T ss_pred CEEEEEEcCCC--CCCCCEEEEcccCHHHcCCceEEEecCC--ceEEEEEeeEEEECCEEecccCC--------CceeeE
Confidence 89999998742 2356999999999 45889999999987 78999999999999987653222 246999
Q ss_pred ecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcCCC
Q 045061 233 DTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEG 312 (359)
Q Consensus 233 DtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~~~ 312 (359)
||||+++++|++++++|++++..... ....+.++|+... .+|+|+|.|+|+.+.|++++|+... .
T Consensus 207 DSGtt~~~lP~~~~~~l~~~~~~~~~--------~~~~~~~~C~~~~----~~p~l~~~f~g~~~~v~~~~y~~~~---~ 271 (318)
T cd05477 207 DTGTSLLTAPQQVMSTLMQSIGAQQD--------QYGQYVVNCNNIQ----NLPTLTFTINGVSFPLPPSAYILQN---N 271 (318)
T ss_pred CCCCccEECCHHHHHHHHHHhCCccc--------cCCCEEEeCCccc----cCCcEEEEECCEEEEECHHHeEecC---C
Confidence 99999999999999999998865422 1245678999765 7999999999999999999999864 3
Q ss_pred eEEE-EEEcC------C-CceeecccceeeeEEEEECCCCEEEEeeC
Q 045061 313 YFCV-AISFS------D-RNSVVGAWQQQDTRFVYDLNTGTIQFVPE 351 (359)
Q Consensus 313 ~~C~-~~~~~------~-~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 351 (359)
..|+ ++.+. + +.+|||.+|||++|+|||++++|||||++
T Consensus 272 ~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 272 GYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 5795 66532 1 36899999999999999999999999985
No 7
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-55 Score=411.63 Aligned_cols=341 Identities=30% Similarity=0.529 Sum_probs=281.9
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCC-CCCCCCCCCCCCCCCCCceeecCCCCCCCCC-CCCCCCCCce
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCV-NCFNQSAPIFNPNASSTYKRIPCDDLICRRP-PFRCENGQCV 80 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~-~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~-~~~c~~~~~~ 80 (359)
.+++|+++|.||||||+|.|++||||+++||+|..|. .|..+.++.|+|++|+||+...|.+..|... ...|.+..|.
T Consensus 43 ~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~ 122 (398)
T KOG1339|consen 43 SSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCP 122 (398)
T ss_pred cccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCCCccCccccccccccCCCCccccccccCcccCCcCc
Confidence 4678999999999999999999999999999999999 7876666669999999999999999999994 3444578999
Q ss_pred EEEEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCC--CCcceEEecCCCCCchHHhhhhc--CCCce
Q 045061 81 HRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFD--GNIAGILGFSVSPFSLLGQLKST--AQGLF 156 (359)
Q Consensus 81 ~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GilGLg~~~~s~~~ql~~~--~~~~f 156 (359)
|.+.|++|+.++|.+++|+|+++..+ .+..++++|||+..+.+ .+. ...+||||||+...++..|+... ..++|
T Consensus 123 y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g-~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~F 200 (398)
T KOG1339|consen 123 YSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPG-SFGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVF 200 (398)
T ss_pred eEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCcc-ccccccccceEeecCCCCccceeecccccCCceeE
Confidence 99999997779999999999999632 26677899999999976 321 46899999999999999998764 34469
Q ss_pred EEeccccCCCCCcceeEEECCCCcc-CCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecC
Q 045061 157 SYCLVYAYREMEATSILRFGKDANI-QRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTG 235 (359)
Q Consensus 157 s~~l~~~~~~~~~~g~l~~Gg~d~~-~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtG 235 (359)
|+||.+........|.|+||+.|.. +.+.+.|+|++..+..+|.+.+++|+|+++. .+++..+..+ ...+|+|||
T Consensus 201 S~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~~~~~~---~~~~iiDSG 276 (398)
T KOG1339|consen 201 SYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSSLFCTD---GGGAIIDSG 276 (398)
T ss_pred EEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcceEecC---CCCEEEECC
Confidence 9999987533346899999999954 7788999999995323999999999999876 4443333211 468999999
Q ss_pred CcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEc-CcEEEEcCCceEEEEcCCCeE
Q 045061 236 AIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFD-RADFKVEPTYMYFIFQNEGYF 314 (359)
Q Consensus 236 t~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~-g~~~~i~~~~y~~~~~~~~~~ 314 (359)
|++++||+++|++|.+++...... ......+.+.|+........+|+|+|+|+ |+.+.+++++|++........
T Consensus 277 Ts~t~lp~~~y~~i~~~~~~~~~~-----~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~ 351 (398)
T KOG1339|consen 277 TSLTYLPTSAYNALREAIGAEVSV-----VGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGV 351 (398)
T ss_pred cceeeccHHHHHHHHHHHHhheec-----cccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECCCCCc
Confidence 999999999999999999987400 12245677899987622123999999999 799999999999987633222
Q ss_pred EEEEEcCC---CceeecccceeeeEEEEECC-CCEEEEee--CCCC
Q 045061 315 CVAISFSD---RNSVVGAWQQQDTRFVYDLN-TGTIQFVP--ENCA 354 (359)
Q Consensus 315 C~~~~~~~---~~~iLG~~fl~~~y~vfD~~-~~~igfa~--~~c~ 354 (359)
|+++.... ..||||..|||+++++||.. ++|||||+ ..|.
T Consensus 352 Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 352 CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 99877654 37999999999999999999 99999999 6675
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.9e-55 Score=403.15 Aligned_cols=297 Identities=20% Similarity=0.295 Sum_probs=246.4
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEEeC
Q 045061 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYA 86 (359)
Q Consensus 7 y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~y~ 86 (359)
|+++|+||||||++.|+|||||+++||++..|..+.|..++.|+|++|+|++... +.+.+.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~-----------------~~~~i~Yg 63 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNG-----------------EAFSIQYG 63 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCC-----------------cEEEEEeC
Confidence 8999999999999999999999999999999986556678899999999999877 79999999
Q ss_pred CCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCC-CCcceEEecCCCCCc------hHHhhhhc---CCCce
Q 045061 87 GGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFD-GNIAGILGFSVSPFS------LLGQLKST---AQGLF 156 (359)
Q Consensus 87 ~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~s------~~~ql~~~---~~~~f 156 (359)
+|+ +.|.+++|+|+|+ +++++++.||++.......+. ...+||||||++..+ ++.+|.+. .+++|
T Consensus 64 ~g~-~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~F 138 (316)
T cd05486 64 TGS-LTGIIGIDQVTVE----GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMF 138 (316)
T ss_pred CcE-EEEEeeecEEEEC----CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEE
Confidence 997 8999999999998 478999999998876551222 378999999997654 35555432 46899
Q ss_pred EEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecC
Q 045061 157 SYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTG 235 (359)
Q Consensus 157 s~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtG 235 (359)
|+||.+..+ ....|.|+|||+|+ ++.+++.|+|+.. ..+|.|.+++|+|+++.+..... ..+|||||
T Consensus 139 S~~L~~~~~-~~~~g~l~fGg~d~~~~~g~l~~~pi~~--~~~w~v~l~~i~v~g~~~~~~~~---------~~aiiDTG 206 (316)
T cd05486 139 SVYMSRNPN-SADGGELVFGGFDTSRFSGQLNWVPVTV--QGYWQIQLDNIQVGGTVIFCSDG---------CQAIVDTG 206 (316)
T ss_pred EEEEccCCC-CCCCcEEEEcccCHHHcccceEEEECCC--ceEEEEEeeEEEEecceEecCCC---------CEEEECCC
Confidence 999986421 23579999999994 5889999999987 78999999999999987643221 47999999
Q ss_pred CcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcC-CCeE
Q 045061 236 AIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQN-EGYF 314 (359)
Q Consensus 236 t~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~-~~~~ 314 (359)
|+++++|++++++|.+.+.+.. . ...+.++|+... .+|+|+|.|+|+.++|+|++|++.... ....
T Consensus 207 Ts~~~lP~~~~~~l~~~~~~~~-------~--~~~~~~~C~~~~----~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~ 273 (316)
T cd05486 207 TSLITGPSGDIKQLQNYIGATA-------T--DGEYGVDCSTLS----LMPSVTFTINGIPYSLSPQAYTLEDQSDGGGY 273 (316)
T ss_pred cchhhcCHHHHHHHHHHhCCcc-------c--CCcEEEeccccc----cCCCEEEEECCEEEEeCHHHeEEecccCCCCE
Confidence 9999999999999988775421 1 234668998765 799999999999999999999987532 3468
Q ss_pred EE-EEEcC------CCceeecccceeeeEEEEECCCCEEEEee
Q 045061 315 CV-AISFS------DRNSVVGAWQQQDTRFVYDLNTGTIQFVP 350 (359)
Q Consensus 315 C~-~~~~~------~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 350 (359)
|+ ++... .+.||||++|||++|+|||.+++|||||+
T Consensus 274 C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 274 CSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 97 45432 14799999999999999999999999996
No 9
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=9.2e-54 Score=390.47 Aligned_cols=290 Identities=31% Similarity=0.607 Sum_probs=239.7
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEEe
Q 045061 6 FYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINY 85 (359)
Q Consensus 6 ~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~y 85 (359)
+|+++|.||||||++.|++||||+++||+|..| |.|.+.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------~~~~i~Y 40 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------CLYQVSY 40 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC----------------------------------------CeeeeEe
Confidence 599999999999999999999999999976554 3699999
Q ss_pred CCCCeEEEEEEEEEEEEecCCcee-ecCceEEEceeCCCCCCCCCCcceEEecCCCCCchHHhhhhcCCCceEEeccccC
Q 045061 86 AGGASASGLVSTETFTFHLKNKLV-CVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAY 164 (359)
Q Consensus 86 ~~g~~~~G~~~~D~v~i~~~~~~~-~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~fs~~l~~~~ 164 (359)
++|+.+.|.+++|+|+|++ . .++++.|||+..... . +...+||||||+...+++.|+....+++||+||.+..
T Consensus 41 g~Gs~~~G~~~~D~v~ig~----~~~~~~~~Fg~~~~~~~-~-~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~~~ 114 (299)
T cd05472 41 GDGSYTTGDLATDTLTLGS----SDVVPGFAFGCGHDNEG-L-FGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRS 114 (299)
T ss_pred CCCceEEEEEEEEEEEeCC----CCccCCEEEECCccCCC-c-cCCCCEEEECCCCcchHHHHhhHhhcCceEEEccCCC
Confidence 9999779999999999995 4 788999999998765 3 3478999999999999999987666789999998643
Q ss_pred CCCCcceeEEECCCCccCCCCceeeeeecCC--CCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecCCcccccC
Q 045061 165 REMEATSILRFGKDANIQRKDMKTIRMFVDR--SSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQ 242 (359)
Q Consensus 165 ~~~~~~g~l~~Gg~d~~~~~~i~~~~~~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt~~~~lp 242 (359)
....|.|+|||+|.. .+++.|+|++..+ ..+|.|++++|+|+++.+...+.. .....++|||||++++||
T Consensus 115 --~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~-----~~~~~~ivDSGTt~~~lp 186 (299)
T cd05472 115 --SSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS-----FGAGGVIIDSGTVITRLP 186 (299)
T ss_pred --CCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc-----cCCCCeEEeCCCcceecC
Confidence 245799999999977 8899999998753 368999999999999987653211 123579999999999999
Q ss_pred chHHHHHHHHHHHHhhccCccccCCCcccc-ccceecccC-ccccceEEEEEc-CcEEEEcCCceEEEEcCCCeEEEEEE
Q 045061 243 RGPYEVVMRHFDEHFTSFGRQRMHNASEDW-EYCYRYDSR-FRAYASMTFHFD-RADFKVEPTYMYFIFQNEGYFCVAIS 319 (359)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~C~~~~~~-~~~~p~l~~~f~-g~~~~i~~~~y~~~~~~~~~~C~~~~ 319 (359)
++++++|.+++....... ......+. ..|+..+.. ...+|+|+|.|+ |+.++|+|++|++.....+..|+++.
T Consensus 187 ~~~~~~l~~~l~~~~~~~----~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~ 262 (299)
T cd05472 187 PSAYAALRDAFRAAMAAY----PRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFA 262 (299)
T ss_pred HHHHHHHHHHHHHHhccC----CCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEe
Confidence 999999999998875321 00111222 358764322 248999999998 79999999999995433567899887
Q ss_pred cCC---CceeecccceeeeEEEEECCCCEEEEeeCCC
Q 045061 320 FSD---RNSVVGAWQQQDTRFVYDLNTGTIQFVPENC 353 (359)
Q Consensus 320 ~~~---~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c 353 (359)
... +.+|||+.|||++|+|||++++|||||+++|
T Consensus 263 ~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 263 GTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 653 5789999999999999999999999999999
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.1e-54 Score=397.98 Aligned_cols=296 Identities=21% Similarity=0.308 Sum_probs=247.3
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEE
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHR 82 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~ 82 (359)
.+..|+++|.||||+|++.|+|||||+++||++..|..+.|..++.|++++|+|++..+ |.+.
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~-----------------~~~~ 69 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANG-----------------TEFK 69 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCC-----------------CEEE
Confidence 36789999999999999999999999999999999986666677899999999999866 7899
Q ss_pred EEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCC-CCCcceEEecCCCCCchH------Hhhhh---cC
Q 045061 83 INYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSF-DGNIAGILGFSVSPFSLL------GQLKS---TA 152 (359)
Q Consensus 83 ~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GilGLg~~~~s~~------~ql~~---~~ 152 (359)
+.|++|+ +.|.+++|+|+|+ .+.++++.|++++...+..+ ....+||||||++..+.. .+|.+ +.
T Consensus 70 ~~y~~g~-~~G~~~~D~v~ig----~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~ 144 (320)
T cd05488 70 IQYGSGS-LEGFVSQDTLSIG----DLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLD 144 (320)
T ss_pred EEECCce-EEEEEEEeEEEEC----CEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCC
Confidence 9999998 8999999999998 47889999999987765122 236899999999876532 23322 25
Q ss_pred CCceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcEE
Q 045061 153 QGLFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCM 231 (359)
Q Consensus 153 ~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~i 231 (359)
++.||+||.+.. ...|.|+|||+|. ++.+++.|+|+.. ..+|.|.+++|+|+++.+..+. ..++
T Consensus 145 ~~~FS~~L~~~~---~~~G~l~fGg~d~~~~~g~l~~~p~~~--~~~w~v~l~~i~vg~~~~~~~~----------~~~i 209 (320)
T cd05488 145 EPVFSFYLGSSE---EDGGEATFGGIDESRFTGKITWLPVRR--KAYWEVELEKIGLGDEELELEN----------TGAA 209 (320)
T ss_pred CCEEEEEecCCC---CCCcEEEECCcCHHHcCCceEEEeCCc--CcEEEEEeCeEEECCEEeccCC----------CeEE
Confidence 789999999753 4579999999994 5889999999987 7899999999999998765432 3699
Q ss_pred EecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcCC
Q 045061 232 IDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNE 311 (359)
Q Consensus 232 iDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~~ 311 (359)
|||||+++++|++++++|.+++.+.. .....+.++|+... .+|+|+|.|+|+.+.|+|++|+++.
T Consensus 210 vDSGtt~~~lp~~~~~~l~~~~~~~~--------~~~~~~~~~C~~~~----~~P~i~f~f~g~~~~i~~~~y~~~~--- 274 (320)
T cd05488 210 IDTGTSLIALPSDLAEMLNAEIGAKK--------SWNGQYTVDCSKVD----SLPDLTFNFDGYNFTLGPFDYTLEV--- 274 (320)
T ss_pred EcCCcccccCCHHHHHHHHHHhCCcc--------ccCCcEEeeccccc----cCCCEEEEECCEEEEECHHHheecC---
Confidence 99999999999999999988875431 11344668898765 7999999999999999999999853
Q ss_pred CeEEEEEE-cC------CCceeecccceeeeEEEEECCCCEEEEee
Q 045061 312 GYFCVAIS-FS------DRNSVVGAWQQQDTRFVYDLNTGTIQFVP 350 (359)
Q Consensus 312 ~~~C~~~~-~~------~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 350 (359)
...|+..+ .. .+.||||.+|||++|+|||++++|||||+
T Consensus 275 ~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 35797543 21 14689999999999999999999999996
No 11
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.8e-54 Score=397.27 Aligned_cols=301 Identities=18% Similarity=0.268 Sum_probs=247.8
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCC--CCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCce
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNC--FNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCV 80 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c--~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~ 80 (359)
.+..|+++|+||||||+++|++||||+++||++..|..| .|..++.|+|++|+|++... |.
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~-----------------~~ 67 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENG-----------------TE 67 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECC-----------------EE
Confidence 368999999999999999999999999999999989753 45678899999999999876 79
Q ss_pred EEEEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCC-CCCcceEEecCCCCCc------hHHhhhh---
Q 045061 81 HRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSF-DGNIAGILGFSVSPFS------LLGQLKS--- 150 (359)
Q Consensus 81 ~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GilGLg~~~~s------~~~ql~~--- 150 (359)
+.+.|++|+ +.|.+++|+|++++ +.+ ++.||++.......+ ....+||||||++..+ ++.+|.+
T Consensus 68 ~~~~Yg~g~-~~G~~~~D~v~~g~----~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~ 141 (326)
T cd05487 68 FTIHYASGT-VKGFLSQDIVTVGG----IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGV 141 (326)
T ss_pred EEEEeCCce-EEEEEeeeEEEECC----EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCC
Confidence 999999998 99999999999994 555 478999887643122 2378999999987554 3334333
Q ss_pred cCCCceEEeccccCCCCCcceeEEECCCC-ccCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCc
Q 045061 151 TAQGLFSYCLVYAYREMEATSILRFGKDA-NIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGG 229 (359)
Q Consensus 151 ~~~~~fs~~l~~~~~~~~~~g~l~~Gg~d-~~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 229 (359)
+.+++||+||.+.. +....|.|+|||+| +.+.+++.|+|+.. ..+|.|.+++++|++..+..... ..
T Consensus 142 i~~~~FS~~L~~~~-~~~~~G~l~fGg~d~~~y~g~l~~~~~~~--~~~w~v~l~~i~vg~~~~~~~~~---------~~ 209 (326)
T cd05487 142 LKEDVFSVYYSRDS-SHSLGGEIVLGGSDPQHYQGDFHYINTSK--TGFWQIQMKGVSVGSSTLLCEDG---------CT 209 (326)
T ss_pred CCCCEEEEEEeCCC-CCCCCcEEEECCcChhhccCceEEEECCc--CceEEEEecEEEECCEEEecCCC---------CE
Confidence 35789999998643 22457999999999 45889999999987 78999999999999987654322 37
Q ss_pred EEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEc
Q 045061 230 CMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQ 309 (359)
Q Consensus 230 ~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~ 309 (359)
++|||||+++++|++++++|++++.+... ...+.++|+... .+|+|+|.|+|+.++|++++|++...
T Consensus 210 aiiDSGts~~~lP~~~~~~l~~~~~~~~~---------~~~y~~~C~~~~----~~P~i~f~fgg~~~~v~~~~yi~~~~ 276 (326)
T cd05487 210 AVVDTGASFISGPTSSISKLMEALGAKER---------LGDYVVKCNEVP----TLPDISFHLGGKEYTLSSSDYVLQDS 276 (326)
T ss_pred EEECCCccchhCcHHHHHHHHHHhCCccc---------CCCEEEeccccC----CCCCEEEEECCEEEEeCHHHhEEecc
Confidence 99999999999999999999999854321 245678999865 79999999999999999999999765
Q ss_pred C-CCeEEE-EEEcC------CCceeecccceeeeEEEEECCCCEEEEeeC
Q 045061 310 N-EGYFCV-AISFS------DRNSVVGAWQQQDTRFVYDLNTGTIQFVPE 351 (359)
Q Consensus 310 ~-~~~~C~-~~~~~------~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 351 (359)
. .+..|+ ++... .+.||||.+|||++|+|||++++|||||++
T Consensus 277 ~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 277 DFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 3 256896 55532 147999999999999999999999999985
No 12
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.3e-53 Score=391.94 Aligned_cols=289 Identities=19% Similarity=0.301 Sum_probs=238.6
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCC---CCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCc
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCV---NCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQC 79 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~---~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~ 79 (359)
.+.+|+++|.||||||++.|+|||||+++||++..|. .| ..++.|+|++|+|++..+ .
T Consensus 7 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~-----------------~ 67 (317)
T cd06098 7 LDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIAC--YFHSKYKSSKSSTYKKNG-----------------T 67 (317)
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccc--cccCcCCcccCCCcccCC-----------------C
Confidence 4789999999999999999999999999999999995 45 567899999999999876 6
Q ss_pred eEEEEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCC-CCcceEEecCCCCCch------HHhhhh--
Q 045061 80 VHRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFD-GNIAGILGFSVSPFSL------LGQLKS-- 150 (359)
Q Consensus 80 ~~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~s~------~~ql~~-- 150 (359)
.+.+.|++|+ +.|.+++|+|+|+ .+.++++.||+++......+. ...+||||||++..+. ..+|.+
T Consensus 68 ~~~i~Yg~G~-~~G~~~~D~v~ig----~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg 142 (317)
T cd06098 68 SASIQYGTGS-ISGFFSQDSVTVG----DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQG 142 (317)
T ss_pred EEEEEcCCce-EEEEEEeeEEEEC----CEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcC
Confidence 8999999998 8999999999999 478999999999876541222 3789999999976543 334443
Q ss_pred -cCCCceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCC
Q 045061 151 -TAQGLFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTG 228 (359)
Q Consensus 151 -~~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 228 (359)
+.+++||+||.+.. .....|.|+|||+|+ ++.+++.|+|+.. ..+|.|.+++|+|++..+..... ..
T Consensus 143 ~i~~~~FS~~L~~~~-~~~~~G~l~fGg~d~~~~~g~l~~~pv~~--~~~w~v~l~~i~v~g~~~~~~~~--------~~ 211 (317)
T cd06098 143 LVKEPVFSFWLNRNP-DEEEGGELVFGGVDPKHFKGEHTYVPVTR--KGYWQFEMGDVLIGGKSTGFCAG--------GC 211 (317)
T ss_pred CCCCCEEEEEEecCC-CCCCCcEEEECccChhhcccceEEEecCc--CcEEEEEeCeEEECCEEeeecCC--------Cc
Confidence 24789999998632 123579999999994 5889999999987 78999999999999987654322 14
Q ss_pred cEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEE
Q 045061 229 GCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIF 308 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~ 308 (359)
.++|||||+++++|++++++|. +.++|+... .+|+|+|.|+|+.++|+|++|+++.
T Consensus 212 ~aivDTGTs~~~lP~~~~~~i~--------------------~~~~C~~~~----~~P~i~f~f~g~~~~l~~~~yi~~~ 267 (317)
T cd06098 212 AAIADSGTSLLAGPTTIVTQIN--------------------SAVDCNSLS----SMPNVSFTIGGKTFELTPEQYILKV 267 (317)
T ss_pred EEEEecCCcceeCCHHHHHhhh--------------------ccCCccccc----cCCcEEEEECCEEEEEChHHeEEee
Confidence 6999999999999998776543 346898765 7999999999999999999999876
Q ss_pred cC-CCeEEEE-EEcC------CCceeecccceeeeEEEEECCCCEEEEee
Q 045061 309 QN-EGYFCVA-ISFS------DRNSVVGAWQQQDTRFVYDLNTGTIQFVP 350 (359)
Q Consensus 309 ~~-~~~~C~~-~~~~------~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 350 (359)
.. ....|+. +... ++.||||++|||++|+|||++++|||||+
T Consensus 268 ~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 268 GEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred cCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 43 2468964 5422 14789999999999999999999999995
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.4e-53 Score=392.04 Aligned_cols=301 Identities=19% Similarity=0.245 Sum_probs=248.2
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCC--CCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCce
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNC--FNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCV 80 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c--~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~ 80 (359)
.+..|+++|+||||+|++.|++||||+++||++..|..| .|..++.|+|++|+|++... |.
T Consensus 8 ~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~-----------------~~ 70 (329)
T cd05485 8 MDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNG-----------------TE 70 (329)
T ss_pred cCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECC-----------------eE
Confidence 468999999999999999999999999999999999743 23457889999999999877 79
Q ss_pred EEEEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCC-CCcceEEecCCCCCc------hHHhhhhc--
Q 045061 81 HRINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFD-GNIAGILGFSVSPFS------LLGQLKST-- 151 (359)
Q Consensus 81 ~~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~s------~~~ql~~~-- 151 (359)
|.+.|++|+ +.|.+++|+|+|+ ++.++++.||++..+.+..+. ...+||||||++..+ ++.||.+.
T Consensus 71 ~~i~Y~~g~-~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~ 145 (329)
T cd05485 71 FAIQYGSGS-LSGFLSTDTVSVG----GVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKL 145 (329)
T ss_pred EEEEECCce-EEEEEecCcEEEC----CEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCC
Confidence 999999998 8999999999999 478899999999876541222 368999999998665 34555443
Q ss_pred -CCCceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCc
Q 045061 152 -AQGLFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGG 229 (359)
Q Consensus 152 -~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 229 (359)
.+++||+||.+... ....|.|+|||+|. ++.+++.|+|+.. ..+|.|.++++++++..+... ...
T Consensus 146 i~~~~FS~~l~~~~~-~~~~G~l~fGg~d~~~~~g~l~~~p~~~--~~~~~v~~~~i~v~~~~~~~~----------~~~ 212 (329)
T cd05485 146 VDAPVFSFYLNRDPS-AKEGGELILGGSDPKHYTGNFTYLPVTR--KGYWQFKMDSVSVGEGEFCSG----------GCQ 212 (329)
T ss_pred CCCCEEEEEecCCCC-CCCCcEEEEcccCHHHcccceEEEEcCC--ceEEEEEeeEEEECCeeecCC----------CcE
Confidence 46899999986431 23469999999994 5889999999987 789999999999998865421 136
Q ss_pred EEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEc
Q 045061 230 CMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQ 309 (359)
Q Consensus 230 ~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~ 309 (359)
+||||||+++++|++++++|.+++.... .. ...+.++|+..+ ++|+|+|.|+|+.+.|+|++|+++..
T Consensus 213 ~iiDSGtt~~~lP~~~~~~l~~~~~~~~------~~--~~~~~~~C~~~~----~~p~i~f~fgg~~~~i~~~~yi~~~~ 280 (329)
T cd05485 213 AIADTGTSLIAGPVDEIEKLNNAIGAKP------II--GGEYMVNCSAIP----SLPDITFVLGGKSFSLTGKDYVLKVT 280 (329)
T ss_pred EEEccCCcceeCCHHHHHHHHHHhCCcc------cc--CCcEEEeccccc----cCCcEEEEECCEEeEEChHHeEEEec
Confidence 9999999999999999999998885431 11 234678999765 78999999999999999999999875
Q ss_pred CC-CeEEEE-EEcC------CCceeecccceeeeEEEEECCCCEEEEee
Q 045061 310 NE-GYFCVA-ISFS------DRNSVVGAWQQQDTRFVYDLNTGTIQFVP 350 (359)
Q Consensus 310 ~~-~~~C~~-~~~~------~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 350 (359)
.. ...|+. +... ++.||||.+|||++|+|||++++|||||+
T Consensus 281 ~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 281 QMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 42 468974 5532 14799999999999999999999999985
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=3.7e-53 Score=400.57 Aligned_cols=297 Identities=18% Similarity=0.298 Sum_probs=243.0
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEE
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHR 82 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~ 82 (359)
.+.+|+++|+||||||++.|+|||||+++||+|..|..|.|+.++.|||++|+|++... +.+.
T Consensus 136 ~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~-----------------~~f~ 198 (453)
T PTZ00147 136 ANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDG-----------------TKVE 198 (453)
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECC-----------------CEEE
Confidence 46789999999999999999999999999999999998878889999999999999877 6899
Q ss_pred EEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCC-C--CCCcceEEecCCCCCc------hHHhhhhc--
Q 045061 83 INYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFS-F--DGNIAGILGFSVSPFS------LLGQLKST-- 151 (359)
Q Consensus 83 ~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~-~--~~~~~GilGLg~~~~s------~~~ql~~~-- 151 (359)
+.|++|+ +.|.+++|+|+|++ +.++ ..|+++....++. . ....+||||||++..+ ++.+|..+
T Consensus 199 i~Yg~Gs-vsG~~~~DtVtiG~----~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~ 272 (453)
T PTZ00147 199 MNYVSGT-VSGFFSKDLVTIGN----LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNK 272 (453)
T ss_pred EEeCCCC-EEEEEEEEEEEECC----EEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCC
Confidence 9999997 99999999999994 6676 5788877654311 1 2378999999998654 34455432
Q ss_pred -CCCceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCc
Q 045061 152 -AQGLFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGG 229 (359)
Q Consensus 152 -~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 229 (359)
.+++||+||.+.. ...|.|+|||+|+ .+.+++.|+|+.. ..+|.|.++ +.+++... . ...
T Consensus 273 I~~~vFS~~L~~~~---~~~G~L~fGGiD~~ky~G~l~y~pl~~--~~~W~V~l~-~~vg~~~~---~---------~~~ 334 (453)
T PTZ00147 273 IEQAVFTFYLPPED---KHKGYLTIGGIEERFYEGPLTYEKLNH--DLYWQVDLD-VHFGNVSS---E---------KAN 334 (453)
T ss_pred CCccEEEEEecCCC---CCCeEEEECCcChhhcCCceEEEEcCC--CceEEEEEE-EEECCEec---C---------cee
Confidence 5789999998643 4579999999994 5889999999986 789999998 46765421 1 147
Q ss_pred EEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEc
Q 045061 230 CMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQ 309 (359)
Q Consensus 230 ~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~ 309 (359)
+||||||+++++|+++++++.+++..... .....+.++|+.. .+|+|+|.|+|+.++|+|++|+....
T Consensus 335 aIiDSGTsli~lP~~~~~ai~~~l~~~~~-------~~~~~y~~~C~~~-----~lP~~~f~f~g~~~~L~p~~yi~~~~ 402 (453)
T PTZ00147 335 VIVDSGTSVITVPTEFLNKFVESLDVFKV-------PFLPLYVTTCNNT-----KLPTLEFRSPNKVYTLEPEYYLQPIE 402 (453)
T ss_pred EEECCCCchhcCCHHHHHHHHHHhCCeec-------CCCCeEEEeCCCC-----CCCeEEEEECCEEEEECHHHheeccc
Confidence 99999999999999999999998854211 1123456789862 79999999999999999999998643
Q ss_pred C-CCeEEE-EEEcCC---CceeecccceeeeEEEEECCCCEEEEeeCC
Q 045061 310 N-EGYFCV-AISFSD---RNSVVGAWQQQDTRFVYDLNTGTIQFVPEN 352 (359)
Q Consensus 310 ~-~~~~C~-~~~~~~---~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 352 (359)
. ....|+ ++...+ +.||||++|||++|+|||.+++|||||+++
T Consensus 403 ~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 403 DIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred cCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 2 346796 466533 479999999999999999999999999986
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.9e-52 Score=394.94 Aligned_cols=296 Identities=16% Similarity=0.288 Sum_probs=240.6
Q ss_pred cceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEE
Q 045061 4 NYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRI 83 (359)
Q Consensus 4 ~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~ 83 (359)
+.+|+++|.||||||++.|+|||||+++||++..|..+.|+.++.|+|++|+|++..+ +.+.+
T Consensus 136 n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~-----------------~~~~i 198 (450)
T PTZ00013 136 NIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDG-----------------TKVDI 198 (450)
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCC-----------------cEEEE
Confidence 5689999999999999999999999999999999987667788999999999999877 68999
Q ss_pred EeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCC-C-CC-CCcceEEecCCCCCc------hHHhhhhc---
Q 045061 84 NYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDF-S-FD-GNIAGILGFSVSPFS------LLGQLKST--- 151 (359)
Q Consensus 84 ~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~-~-~~-~~~~GilGLg~~~~s------~~~ql~~~--- 151 (359)
.|++|+ +.|.++.|+|+|++ ++++ ..|+++...... . +. ...+||||||++..+ ++.+|.+.
T Consensus 199 ~YG~Gs-v~G~~~~Dtv~iG~----~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I 272 (450)
T PTZ00013 199 TYGSGT-VKGFFSKDLVTLGH----LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKI 272 (450)
T ss_pred EECCce-EEEEEEEEEEEECC----EEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCc
Confidence 999998 99999999999994 6666 578877654320 1 11 368999999998654 45566542
Q ss_pred CCCceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcE
Q 045061 152 AQGLFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGC 230 (359)
Q Consensus 152 ~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ 230 (359)
.+++||+||.+.. ...|.|+|||+|+ .+.+++.|+|+.. ..+|.|.++ +.++..... ...+
T Consensus 273 ~~~vFS~~L~~~~---~~~G~L~fGGiD~~~y~G~L~y~pv~~--~~yW~I~l~-v~~G~~~~~------------~~~a 334 (450)
T PTZ00013 273 DNALFTFYLPVHD---VHAGYLTIGGIEEKFYEGNITYEKLNH--DLYWQIDLD-VHFGKQTMQ------------KANV 334 (450)
T ss_pred CCcEEEEEecCCC---CCCCEEEECCcCccccccceEEEEcCc--CceEEEEEE-EEECceecc------------ccce
Confidence 5789999998643 4579999999994 5889999999987 789999998 666644321 1369
Q ss_pred EEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEc-
Q 045061 231 MIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQ- 309 (359)
Q Consensus 231 iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~- 309 (359)
++||||+++++|+++++++.+++.... ......+.++|+.. .+|+|+|.|+|+.++|+|++|+....
T Consensus 335 IlDSGTSli~lP~~~~~~i~~~l~~~~-------~~~~~~y~~~C~~~-----~lP~i~F~~~g~~~~L~p~~Yi~~~~~ 402 (450)
T PTZ00013 335 IVDSGTTTITAPSEFLNKFFANLNVIK-------VPFLPFYVTTCDNK-----EMPTLEFKSANNTYTLEPEYYMNPLLD 402 (450)
T ss_pred EECCCCccccCCHHHHHHHHHHhCCee-------cCCCCeEEeecCCC-----CCCeEEEEECCEEEEECHHHheehhcc
Confidence 999999999999999999998875431 11123466889752 78999999999999999999997532
Q ss_pred CCCeEEE-EEEcCC---CceeecccceeeeEEEEECCCCEEEEeeCC
Q 045061 310 NEGYFCV-AISFSD---RNSVVGAWQQQDTRFVYDLNTGTIQFVPEN 352 (359)
Q Consensus 310 ~~~~~C~-~~~~~~---~~~iLG~~fl~~~y~vfD~~~~~igfa~~~ 352 (359)
.++..|+ ++.+.+ +.||||++|||++|+|||++++|||||+++
T Consensus 403 ~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 403 VDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 2456896 555433 579999999999999999999999999975
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=8.3e-51 Score=380.39 Aligned_cols=318 Identities=16% Similarity=0.220 Sum_probs=240.1
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEEe
Q 045061 6 FYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINY 85 (359)
Q Consensus 6 ~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~y 85 (359)
.|+++|.||||||++.|+|||||+++||++..|. ..++.|+|++|+|++..+ |.|.+.|
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~----~~~~~f~~~~SsT~~~~~-----------------~~~~i~Y 61 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP----FIHTYFHRELSSTYRDLG-----------------KGVTVPY 61 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCc----cccccCCchhCcCcccCC-----------------ceEEEEE
Confidence 6999999999999999999999999999998773 346789999999999987 7899999
Q ss_pred CCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCC--CCcceEEecCCCCCc--------hHHhhhhc--CC
Q 045061 86 AGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFD--GNIAGILGFSVSPFS--------LLGQLKST--AQ 153 (359)
Q Consensus 86 ~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~--~~~~GilGLg~~~~s--------~~~ql~~~--~~ 153 (359)
++|+ +.|.+++|+|+|++.. ...+ .+.|+++..... .+. ...+||||||++..+ +..+|.+. .+
T Consensus 62 g~Gs-~~G~~~~D~v~ig~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~ 137 (364)
T cd05473 62 TQGS-WEGELGTDLVSIPKGP-NVTF-RANIAAITESEN-FFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIP 137 (364)
T ss_pred Ccce-EEEEEEEEEEEECCCC-ccce-EEeeEEEecccc-ceecccccceeeeecccccccCCCCCCCHHHHHHhccCCc
Confidence 9997 8999999999998421 1111 123445544333 222 267999999997652 33333322 35
Q ss_pred CceEEeccccC----C--CCCcceeEEECCCC-ccCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCC
Q 045061 154 GLFSYCLVYAY----R--EMEATSILRFGKDA-NIQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNG 226 (359)
Q Consensus 154 ~~fs~~l~~~~----~--~~~~~g~l~~Gg~d-~~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ 226 (359)
++||++|.... . .....|.|+|||+| ..+.+++.|+|+.. ..+|.|.+++|+|++..+..+...+.
T Consensus 138 ~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~--~~~~~v~l~~i~vg~~~~~~~~~~~~----- 210 (364)
T cd05473 138 DVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE--EWYYEVIILKLEVGGQSLNLDCKEYN----- 210 (364)
T ss_pred cceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc--ceeEEEEEEEEEECCEeccccccccc-----
Confidence 69999885321 1 12357999999999 45889999999987 67999999999999998765432211
Q ss_pred CCcEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCC-ccccccceecccC-ccccceEEEEEcC------cEEE
Q 045061 227 TGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNA-SEDWEYCYRYDSR-FRAYASMTFHFDR------ADFK 298 (359)
Q Consensus 227 ~~~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~-~~~~p~l~~~f~g------~~~~ 298 (359)
...+||||||++++||++++++|.+++.+....+. ..... ..+.++|+..... .+.+|+|+|.|+| ..++
T Consensus 211 ~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~ 288 (364)
T cd05473 211 YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIED--FPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRIT 288 (364)
T ss_pred CccEEEeCCCcceeCCHHHHHHHHHHHHhhccccc--CCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEE
Confidence 13699999999999999999999999988753221 11111 1234689864321 2369999999975 3689
Q ss_pred EcCCceEEEEcC--CCeEEEEE--EcCCCceeecccceeeeEEEEECCCCEEEEeeCCCCCcc
Q 045061 299 VEPTYMYFIFQN--EGYFCVAI--SFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPENCANDH 357 (359)
Q Consensus 299 i~~~~y~~~~~~--~~~~C~~~--~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c~~~~ 357 (359)
|+|++|+..... .+..|+++ ....+.||||+.|||++|+|||.+++|||||+++|....
T Consensus 289 l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~ 351 (364)
T cd05473 289 ILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHD 351 (364)
T ss_pred ECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEeccccccc
Confidence 999999986432 24689754 333467999999999999999999999999999998754
No 17
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1e-50 Score=363.89 Aligned_cols=260 Identities=38% Similarity=0.682 Sum_probs=223.2
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEEe
Q 045061 6 FYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINY 85 (359)
Q Consensus 6 ~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~y 85 (359)
.|+++|.||||||++.|+|||||+++||+| |.+.+.|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------~~~~~~Y 37 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------CSYEYSY 37 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-------------------------------------------CceEeEe
Confidence 599999999999999999999999999975 2588999
Q ss_pred CCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCCCCcceEEecCCCCCchHHhhhhcCCCceEEeccccCC
Q 045061 86 AGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCLVYAYR 165 (359)
Q Consensus 86 ~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~fs~~l~~~~~ 165 (359)
++|+.+.|.+++|+|+|++.+ ..++++.|||++.... ......+||||||+...+++.||+... ++||+||.+..
T Consensus 38 ~dg~~~~G~~~~D~v~~g~~~--~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~~~~- 112 (265)
T cd05476 38 GDGSSTSGVLATETFTFGDSS--VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLVPHD- 112 (265)
T ss_pred CCCceeeeeEEEEEEEecCCC--CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc-CeeEEEccCCC-
Confidence 998889999999999999521 1788999999999875 334588999999999999999988544 79999998742
Q ss_pred CCCcceeEEECCCCccCCCCceeeeeecCC--CCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecCCcccccCc
Q 045061 166 EMEATSILRFGKDANIQRKDMKTIRMFVDR--SSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQR 243 (359)
Q Consensus 166 ~~~~~g~l~~Gg~d~~~~~~i~~~~~~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt~~~~lp~ 243 (359)
+....|.|+||++|..+.+++.|+|++.++ ..+|.+++++|+|+++.+.++.+.+.........+||||||++++||+
T Consensus 113 ~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~ 192 (265)
T cd05476 113 DTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPD 192 (265)
T ss_pred CCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCc
Confidence 235689999999996588999999999853 579999999999999988754443333333456899999999999999
Q ss_pred hHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEc-CcEEEEcCCceEEEEcCCCeEEEEEEcC-
Q 045061 244 GPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFD-RADFKVEPTYMYFIFQNEGYFCVAISFS- 321 (359)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~-g~~~~i~~~~y~~~~~~~~~~C~~~~~~- 321 (359)
+++ |+|+|.|+ ++.+.+++++|+.... .+..|+++...
T Consensus 193 ~~~---------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~-~~~~C~~~~~~~ 232 (265)
T cd05476 193 PAY---------------------------------------PDLTLHFDGGADLELPPENYFVDVG-EGVVCLAILSSS 232 (265)
T ss_pred ccc---------------------------------------CCEEEEECCCCEEEeCcccEEEECC-CCCEEEEEecCC
Confidence 987 88999999 7999999999999544 56799998876
Q ss_pred -CCceeecccceeeeEEEEECCCCEEEEeeCCC
Q 045061 322 -DRNSVVGAWQQQDTRFVYDLNTGTIQFVPENC 353 (359)
Q Consensus 322 -~~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c 353 (359)
.+.+|||++|||++|+|||++++|||||+++|
T Consensus 233 ~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 233 SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 36899999999999999999999999999999
No 18
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5e-51 Score=368.52 Aligned_cols=265 Identities=22% Similarity=0.283 Sum_probs=222.7
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEEeC
Q 045061 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYA 86 (359)
Q Consensus 7 y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~y~ 86 (359)
|+++|+||||||++.|+|||||+++||++..|..|.+..++.|++++|+|++.... +.+.+.|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~~----------------~~~~i~Y~ 64 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLPG----------------ATWSISYG 64 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecCC----------------cEEEEEeC
Confidence 78999999999999999999999999999999999888888999999999987532 78999999
Q ss_pred CCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCC--CCCcceEEecCCCCCc---------hHHhhhhc-CCC
Q 045061 87 GGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSF--DGNIAGILGFSVSPFS---------LLGQLKST-AQG 154 (359)
Q Consensus 87 ~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~~GilGLg~~~~s---------~~~ql~~~-~~~ 154 (359)
+|+.+.|.+++|+|+|+ .++++++.||+++.... .. ....+||||||++..+ +..+|... .++
T Consensus 65 ~G~~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~-~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (278)
T cd06097 65 DGSSASGIVYTDTVSIG----GVEVPNQAIELATAVSA-SFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAP 139 (278)
T ss_pred CCCeEEEEEEEEEEEEC----CEEECCeEEEEEeecCc-cccccccccceeeeccccccccccCCCCCHHHHHHHhccCc
Confidence 99879999999999999 47899999999998764 22 2489999999997654 33444332 368
Q ss_pred ceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEe
Q 045061 155 LFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMID 233 (359)
Q Consensus 155 ~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiD 233 (359)
.||++|.+ ...|.|+|||+|+ ++.+++.|+|+... ..+|.|.+++|+|++....... ...++||
T Consensus 140 ~Fs~~l~~-----~~~G~l~fGg~D~~~~~g~l~~~pi~~~-~~~w~v~l~~i~v~~~~~~~~~---------~~~~iiD 204 (278)
T cd06097 140 LFTADLRK-----AAPGFYTFGYIDESKYKGEISWTPVDNS-SGFWQFTSTSYTVGGDAPWSRS---------GFSAIAD 204 (278)
T ss_pred eEEEEecC-----CCCcEEEEeccChHHcCCceEEEEccCC-CcEEEEEEeeEEECCcceeecC---------CceEEee
Confidence 99999986 3479999999994 58899999999864 5799999999999987432211 2479999
Q ss_pred cCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcCCCe
Q 045061 234 TGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGY 313 (359)
Q Consensus 234 tGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~~~~ 313 (359)
|||+++++|++++++|.+++.+.. .......+.++|.. .+|+|+|.|
T Consensus 205 SGTs~~~lP~~~~~~l~~~l~g~~------~~~~~~~~~~~C~~------~~P~i~f~~--------------------- 251 (278)
T cd06097 205 TGTTLILLPDAIVEAYYSQVPGAY------YDSEYGGWVFPCDT------TLPDLSFAV--------------------- 251 (278)
T ss_pred cCCchhcCCHHHHHHHHHhCcCCc------ccCCCCEEEEECCC------CCCCEEEEE---------------------
Confidence 999999999999999999884221 11123457789986 589999999
Q ss_pred EEEEEEcCCCceeecccceeeeEEEEECCCCEEEEee
Q 045061 314 FCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVP 350 (359)
Q Consensus 314 ~C~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 350 (359)
.||||++|||++|+|||++++|||||+
T Consensus 252 ----------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ----------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ----------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 589999999999999999999999995
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=8.7e-50 Score=359.05 Aligned_cols=257 Identities=28% Similarity=0.527 Sum_probs=217.0
Q ss_pred ceEEEEEEeCCCCcEEEEEEEcCCCceeEeC-CCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEE
Q 045061 5 YFYTVDVLFGTPSKSEFLLFDTGSYLIWTQC-LPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRI 83 (359)
Q Consensus 5 ~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~-~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~ 83 (359)
|+|+++|.||||||++.|++||||+++||+| .+|..| . |.|.+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------~-----------------c~~~i 44 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------Q-----------------CDYEI 44 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------c-----------------CccEe
Confidence 6899999999999999999999999999998 467766 2 68999
Q ss_pred EeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCC---CCCcceEEecCCCCCchHHhhhhc--CCCceEE
Q 045061 84 NYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSF---DGNIAGILGFSVSPFSLLGQLKST--AQGLFSY 158 (359)
Q Consensus 84 ~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~---~~~~~GilGLg~~~~s~~~ql~~~--~~~~fs~ 158 (359)
.|++++.+.|.+++|+|+++..++...++++.|||+..... .+ ....+||||||+...++++||... .+++||+
T Consensus 45 ~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~-~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 45 EYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQG-PLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred EeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCC-cccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 99988779999999999998644456788999999987654 22 237899999999999999998753 4689999
Q ss_pred eccccCCCCCcceeEEECCCCccCCCCceeeeeecCC-CCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecCCc
Q 045061 159 CLVYAYREMEATSILRFGKDANIQRKDMKTIRMFVDR-SSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAI 237 (359)
Q Consensus 159 ~l~~~~~~~~~~g~l~~Gg~d~~~~~~i~~~~~~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt~ 237 (359)
||.+ ...|.|+||+. ..+.+++.|+|+...+ ..+|.|++++|+|+++.... ....++|||||+
T Consensus 124 ~l~~-----~~~g~l~~G~~-~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~----------~~~~~ivDTGTt 187 (273)
T cd05475 124 CLSS-----NGGGFLFFGDD-LVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGG----------KGLEVVFDSGSS 187 (273)
T ss_pred EccC-----CCCeEEEECCC-CCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcC----------CCceEEEECCCc
Confidence 9986 34699999843 4466789999998742 36999999999999884321 124799999999
Q ss_pred ccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcC----cEEEEcCCceEEEEcCCCe
Q 045061 238 ATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDR----ADFKVEPTYMYFIFQNEGY 313 (359)
Q Consensus 238 ~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g----~~~~i~~~~y~~~~~~~~~ 313 (359)
++++|+++| +|+|+|.|++ +.++|+|++|++... ++.
T Consensus 188 ~t~lp~~~y--------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~-~~~ 228 (273)
T cd05475 188 YTYFNAQAY--------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE-KGN 228 (273)
T ss_pred eEEcCCccc--------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC-CCC
Confidence 999999876 4889999987 699999999998755 567
Q ss_pred EEEEEEcCC-----CceeecccceeeeEEEEECCCCEEEEeeCCC
Q 045061 314 FCVAISFSD-----RNSVVGAWQQQDTRFVYDLNTGTIQFVPENC 353 (359)
Q Consensus 314 ~C~~~~~~~-----~~~iLG~~fl~~~y~vfD~~~~~igfa~~~c 353 (359)
.|+++.... +.||||+.|||++|+|||++++|||||+++|
T Consensus 229 ~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 229 VCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 899887532 4689999999999999999999999999999
No 20
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=2.6e-49 Score=367.57 Aligned_cols=319 Identities=23% Similarity=0.381 Sum_probs=255.5
Q ss_pred eCCCCcE-EEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCC-------------CCCCCCCC
Q 045061 13 FGTPSKS-EFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRP-------------PFRCENGQ 78 (359)
Q Consensus 13 iGtp~Q~-~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~-------------~~~c~~~~ 78 (359)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.+.|++..|... +..|.++.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~--------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~~~ 67 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA--------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGNNT 67 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC--------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCCCc
Confidence 5788778 999999999999998754 4588999999999999862 12577778
Q ss_pred ceEEEE-eCCCCeEEEEEEEEEEEEecCCce----eecCceEEEceeCCCCCCCCCCcceEEecCCCCCchHHhhhhc--
Q 045061 79 CVHRIN-YAGGASASGLVSTETFTFHLKNKL----VCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKST-- 151 (359)
Q Consensus 79 ~~~~~~-y~~g~~~~G~~~~D~v~i~~~~~~----~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~-- 151 (359)
|.|... |.+|+...|.+++|+|+|+..++. ..++++.|||+.......+....+||||||++..|++.||...
T Consensus 68 C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~ 147 (362)
T cd05489 68 CTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFG 147 (362)
T ss_pred CeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcC
Confidence 988755 778977999999999999854322 3788999999988643012346899999999999999998754
Q ss_pred CCCceEEeccccCCCCCcceeEEECCCCcc-C------CCCceeeeeecCC--CCcEEEEEeEEEECCEEeecCCCcccc
Q 045061 152 AQGLFSYCLVYAYREMEATSILRFGKDANI-Q------RKDMKTIRMFVDR--SSHYYLSLQDISVADHRIGFAPGTFAL 222 (359)
Q Consensus 152 ~~~~fs~~l~~~~~~~~~~g~l~~Gg~d~~-~------~~~i~~~~~~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~ 222 (359)
.+++||+||.+.. ...|.|+||+.+.. + .+.+.|+|++.++ ..+|.|++++|+||++++.+++..+..
T Consensus 148 ~~~~FS~CL~~~~---~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~ 224 (362)
T cd05489 148 VARKFALCLPSSP---GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAN 224 (362)
T ss_pred CCcceEEEeCCCC---CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccc
Confidence 3589999998743 35799999999843 3 3789999999753 369999999999999998877666555
Q ss_pred ccCCCCcEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccC-----ccccceEEEEEcC--c
Q 045061 223 RRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSR-----FRAYASMTFHFDR--A 295 (359)
Q Consensus 223 ~~~~~~~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-----~~~~p~l~~~f~g--~ 295 (359)
...+...+||||||++++||+++|++|.+++.+....... ..........|+..... ...+|+|+|+|+| +
T Consensus 225 ~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~--~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~ 302 (362)
T cd05489 225 DRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPR--VPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGV 302 (362)
T ss_pred cccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCc--CCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCe
Confidence 5455678999999999999999999999999887643211 11111122578764321 2589999999986 9
Q ss_pred EEEEcCCceEEEEcCCCeEEEEEEcCC----CceeecccceeeeEEEEECCCCEEEEeeC
Q 045061 296 DFKVEPTYMYFIFQNEGYFCVAISFSD----RNSVVGAWQQQDTRFVYDLNTGTIQFVPE 351 (359)
Q Consensus 296 ~~~i~~~~y~~~~~~~~~~C~~~~~~~----~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 351 (359)
.++|+|++|+++.. ++.+|++|...+ ..||||+.|||++|+|||.+++|||||+.
T Consensus 303 ~~~l~~~ny~~~~~-~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 303 NWTIFGANSMVQVK-GGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEcCCceEEEcC-CCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999999865 567899998654 36899999999999999999999999975
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.7e-50 Score=371.05 Aligned_cols=297 Identities=24% Similarity=0.414 Sum_probs=251.6
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCC-CCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEE
Q 045061 6 FYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNC-FNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRIN 84 (359)
Q Consensus 6 ~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c-~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~ 84 (359)
+|+++|.||||||+++|++||||+.+||++..|..| .+..+..|++.+|+|++... +.+.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~-----------------~~~~~~ 63 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQG-----------------KPFSIS 63 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEE-----------------EEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccce-----------------eeeeee
Confidence 599999999999999999999999999999999887 66788999999999999887 689999
Q ss_pred eCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCC-CCCcceEEecCCCC-------CchHHhhhhc---CC
Q 045061 85 YAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSF-DGNIAGILGFSVSP-------FSLLGQLKST---AQ 153 (359)
Q Consensus 85 y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GilGLg~~~-------~s~~~ql~~~---~~ 153 (359)
|++|. ++|.+++|+|+|+ ++.++++.||++.......+ ....+||||||++. .+++.+|.+. .+
T Consensus 64 y~~g~-~~G~~~~D~v~ig----~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~ 138 (317)
T PF00026_consen 64 YGDGS-VSGNLVSDTVSIG----GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISS 138 (317)
T ss_dssp ETTEE-EEEEEEEEEEEET----TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSS
T ss_pred ccCcc-cccccccceEeee----eccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccc
Confidence 99999 9999999999999 47888999999999654111 34889999999753 4577777654 57
Q ss_pred CceEEeccccCCCCCcceeEEECCCCc-cCCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEE
Q 045061 154 GLFSYCLVYAYREMEATSILRFGKDAN-IQRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMI 232 (359)
Q Consensus 154 ~~fs~~l~~~~~~~~~~g~l~~Gg~d~-~~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ii 232 (359)
++||++|.+.. ...|.|+|||+|+ .+.+++.|+|+.. ..+|.+.+++|.+++........ ..++|
T Consensus 139 ~~fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~~~~~--~~~w~v~~~~i~i~~~~~~~~~~---------~~~~~ 204 (317)
T PF00026_consen 139 NVFSLYLNPSD---SQNGSLTFGGYDPSKYDGDLVWVPLVS--SGYWSVPLDSISIGGESVFSSSG---------QQAIL 204 (317)
T ss_dssp SEEEEEEESTT---SSEEEEEESSEEGGGEESEEEEEEBSS--TTTTEEEEEEEEETTEEEEEEEE---------EEEEE
T ss_pred cccceeeeecc---cccchheeeccccccccCceeccCccc--ccccccccccccccccccccccc---------eeeec
Confidence 89999999865 6789999999995 5889999999996 89999999999999993322221 26999
Q ss_pred ecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcCC-
Q 045061 233 DTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNE- 311 (359)
Q Consensus 233 DtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~~- 311 (359)
|||+++++||++++++|++++.+.... ..+.++|.... .+|.|+|.|++..++|+|++|+......
T Consensus 205 Dtgt~~i~lp~~~~~~i~~~l~~~~~~---------~~~~~~c~~~~----~~p~l~f~~~~~~~~i~~~~~~~~~~~~~ 271 (317)
T PF00026_consen 205 DTGTSYIYLPRSIFDAIIKALGGSYSD---------GVYSVPCNSTD----SLPDLTFTFGGVTFTIPPSDYIFKIEDGN 271 (317)
T ss_dssp ETTBSSEEEEHHHHHHHHHHHTTEEEC---------SEEEEETTGGG----GSEEEEEEETTEEEEEEHHHHEEEESSTT
T ss_pred ccccccccccchhhHHHHhhhcccccc---------eeEEEeccccc----ccceEEEeeCCEEEEecchHhcccccccc
Confidence 999999999999999999999766321 56778998875 7999999999999999999999988743
Q ss_pred CeEEEE-EEc---CC--CceeecccceeeeEEEEECCCCEEEEeeC
Q 045061 312 GYFCVA-ISF---SD--RNSVVGAWQQQDTRFVYDLNTGTIQFVPE 351 (359)
Q Consensus 312 ~~~C~~-~~~---~~--~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 351 (359)
...|+. +.. .. +.+|||.+|||++|+|||++++|||||++
T Consensus 272 ~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 272 GGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp SSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 358954 444 12 68899999999999999999999999985
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.2e-48 Score=352.85 Aligned_cols=271 Identities=23% Similarity=0.327 Sum_probs=228.0
Q ss_pred ceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEE
Q 045061 5 YFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRIN 84 (359)
Q Consensus 5 ~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~ 84 (359)
..|+++|.||||||++.|++||||+++||+ .|.+.
T Consensus 1 ~~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~---------------------------------------------~~~~~ 35 (295)
T cd05474 1 TYYSAELSVGTPPQKVTVLLDTGSSDLWVP---------------------------------------------DFSIS 35 (295)
T ss_pred CeEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------eeEEE
Confidence 379999999999999999999999999996 27888
Q ss_pred eCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCCCCcceEEecCCCCC-----------chHHhhhhc--
Q 045061 85 YAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPF-----------SLLGQLKST-- 151 (359)
Q Consensus 85 y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~-----------s~~~ql~~~-- 151 (359)
|++|+.+.|.+++|+|++++ ..++++.||+++.... .+||||||+... +++.||...
T Consensus 36 Y~~g~~~~G~~~~D~v~~g~----~~~~~~~fg~~~~~~~------~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~ 105 (295)
T cd05474 36 YGDGTSASGTWGTDTVSIGG----ATVKNLQFAVANSTSS------DVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGL 105 (295)
T ss_pred eccCCcEEEEEEEEEEEECC----eEecceEEEEEecCCC------CcceeeECCCCCcccccCCCcCCCHHHHHHHCCc
Confidence 99977799999999999984 6788999999998433 689999999875 688888653
Q ss_pred -CCCceEEeccccCCCCCcceeEEECCCC-ccCCCCceeeeeecCCC----CcEEEEEeEEEECCEEeecCCCccccccC
Q 045061 152 -AQGLFSYCLVYAYREMEATSILRFGKDA-NIQRKDMKTIRMFVDRS----SHYYLSLQDISVADHRIGFAPGTFALRRN 225 (359)
Q Consensus 152 -~~~~fs~~l~~~~~~~~~~g~l~~Gg~d-~~~~~~i~~~~~~~~~~----~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 225 (359)
.++.||+||.+.. ...|.|+|||+| ..+.+++.|+|+...+. .+|.|.+++|++++..+..+.. .
T Consensus 106 i~~~~Fsl~l~~~~---~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~------~ 176 (295)
T cd05474 106 IKKNAYSLYLNDLD---ASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLL------S 176 (295)
T ss_pred ccceEEEEEeCCCC---CCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCccccc------C
Confidence 4689999998753 467999999999 45889999999998532 7999999999999887642111 1
Q ss_pred CCCcEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceE
Q 045061 226 GTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMY 305 (359)
Q Consensus 226 ~~~~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~ 305 (359)
....++|||||++++||++++++|++++.+.... ....+..+|+... . |+|+|.|+|+.++|++++|+
T Consensus 177 ~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~-------~~~~~~~~C~~~~----~-p~i~f~f~g~~~~i~~~~~~ 244 (295)
T cd05474 177 KNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS-------DEGLYVVDCDAKD----D-GSLTFNFGGATISVPLSDLV 244 (295)
T ss_pred CCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC-------CCcEEEEeCCCCC----C-CEEEEEECCeEEEEEHHHhE
Confidence 2357999999999999999999999999765432 1355779999865 4 99999999999999999999
Q ss_pred EEEcC---CCeEE-EEEEcCC-CceeecccceeeeEEEEECCCCEEEEeeC
Q 045061 306 FIFQN---EGYFC-VAISFSD-RNSVVGAWQQQDTRFVYDLNTGTIQFVPE 351 (359)
Q Consensus 306 ~~~~~---~~~~C-~~~~~~~-~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 351 (359)
+.... .+..| +++.+.+ +.+|||.+|||++|+|||.+++|||||++
T Consensus 245 ~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 245 LPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred eccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 97642 35788 5777666 68999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.5e-45 Score=332.49 Aligned_cols=270 Identities=27% Similarity=0.491 Sum_probs=227.0
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCC--CCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEE
Q 045061 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPI--FNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRIN 84 (359)
Q Consensus 7 y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~--y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~ 84 (359)
|+++|.||+|||++.|++||||+++||+|..|..|.++.... |++..|+++.... |.+.+.
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~-----------------~~~~~~ 63 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTG-----------------CTFSIT 63 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCC-----------------CEEEEE
Confidence 789999999999999999999999999999999887766655 7888888777655 799999
Q ss_pred eCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCC-CCCcceEEecCCCC------CchHHhhhhc---CCC
Q 045061 85 YAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSF-DGNIAGILGFSVSP------FSLLGQLKST---AQG 154 (359)
Q Consensus 85 y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~-~~~~~GilGLg~~~------~s~~~ql~~~---~~~ 154 (359)
|++|. +.|.+++|+|+|++ ..++++.||+++.... .. ....+||||||+.. .+++.||.+. .++
T Consensus 64 Y~~g~-~~g~~~~D~v~~~~----~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~ 137 (283)
T cd05471 64 YGDGS-VTGGLGTDTVTIGG----LTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSP 137 (283)
T ss_pred ECCCe-EEEEEEEeEEEECC----EEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCC
Confidence 99987 99999999999995 5688999999999875 32 34899999999998 7899998764 579
Q ss_pred ceEEeccccCCCCCcceeEEECCCCcc-CCCCceeeeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEe
Q 045061 155 LFSYCLVYAYREMEATSILRFGKDANI-QRKDMKTIRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMID 233 (359)
Q Consensus 155 ~fs~~l~~~~~~~~~~g~l~~Gg~d~~-~~~~i~~~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiD 233 (359)
+||+||.+.. .....|.|+|||+|.. +.+++.|+|++.....+|.|.+++|.+++...... .....++||
T Consensus 138 ~Fs~~l~~~~-~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~--------~~~~~~iiD 208 (283)
T cd05471 138 VFSFYLGRDG-DGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISS--------SGGGGAIVD 208 (283)
T ss_pred EEEEEEcCCC-CCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeec--------CCCcEEEEe
Confidence 9999999853 2357899999999954 78999999999854579999999999998741111 123579999
Q ss_pred cCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEEcCCCe
Q 045061 234 TGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIFQNEGY 313 (359)
Q Consensus 234 tGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~~~~~~ 313 (359)
||+++++||++++++|++++...... ....+...|.... .+|+|+|+|
T Consensus 209 sGt~~~~lp~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~----~~p~i~f~f--------------------- 256 (283)
T cd05471 209 SGTSLIYLPSSVYDAILKALGAAVSS-------SDGGYGVDCSPCD----TLPDITFTF--------------------- 256 (283)
T ss_pred cCCCCEeCCHHHHHHHHHHhCCcccc-------cCCcEEEeCcccC----cCCCEEEEE---------------------
Confidence 99999999999999999999776542 1223445565554 899999999
Q ss_pred EEEEEEcCCCceeecccceeeeEEEEECCCCEEEEee
Q 045061 314 FCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVP 350 (359)
Q Consensus 314 ~C~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 350 (359)
.+|||.+|||++|+|||++++|||||+
T Consensus 257 ----------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 579999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=3.3e-29 Score=207.25 Aligned_cols=158 Identities=39% Similarity=0.723 Sum_probs=128.6
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCC-----CCCCCCCceE
Q 045061 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPP-----FRCENGQCVH 81 (359)
Q Consensus 7 y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~-----~~c~~~~~~~ 81 (359)
|+++|.||||+|++.|+|||||+++|++| ..+.|+|.+|+||+.+.|.+++|.... ..|.+..|.|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C---------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y 71 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC---------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPY 71 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET-------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC---------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccc
Confidence 89999999999999999999999999987 677899999999999999999998732 2334789999
Q ss_pred EEEeCCCCeEEEEEEEEEEEEecCC-ceeecCceEEEceeCCCCCCCCCCcceEEecCCCCCchHHhhhhcCCCceEEec
Q 045061 82 RINYAGGASASGLVSTETFTFHLKN-KLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLKSTAQGLFSYCL 160 (359)
Q Consensus 82 ~~~y~~g~~~~G~~~~D~v~i~~~~-~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~fs~~l 160 (359)
.+.|.++..+.|.+++|+|.++... +...+.++.|||+....+ . ....+||||||+.+.||+.||.+...++||+||
T Consensus 72 ~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g-~-~~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyCL 149 (164)
T PF14543_consen 72 SQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSG-L-FYGADGILGLGRGPLSLPSQLASSSGNKFSYCL 149 (164)
T ss_dssp EEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGT-S-STTEEEEEE-SSSTTSHHHHHHHH--SEEEEEB
T ss_pred eeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeecccc-C-CcCCCcccccCCCcccHHHHHHHhcCCeEEEEC
Confidence 9999999999999999999999653 236678999999999886 3 449999999999999999999666789999999
Q ss_pred cccCCCCCcceeEEECC
Q 045061 161 VYAYREMEATSILRFGK 177 (359)
Q Consensus 161 ~~~~~~~~~~g~l~~Gg 177 (359)
.+ .+....|.|+||+
T Consensus 150 ~~--~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 150 PS--SSPSSSGFLSFGD 164 (164)
T ss_dssp -S---SSSSEEEEEECS
T ss_pred CC--CCCCCCEEEEeCc
Confidence 99 3358899999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.93 E-value=4.5e-25 Score=182.49 Aligned_cols=151 Identities=32% Similarity=0.677 Sum_probs=121.9
Q ss_pred cEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCcccccccee
Q 045061 198 HYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYR 277 (359)
Q Consensus 198 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 277 (359)
+|.|+|++|+|+++++.++++.|++ .++.+.++|||||++++||+++|++|.+++........+.+..........|++
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 4889999999999999999998887 777889999999999999999999999999999876533222234567789999
Q ss_pred ccc-----CccccceEEEEEc-CcEEEEcCCceEEEEcCCCeEEEEEEcC----CCceeecccceeeeEEEEECCCCEEE
Q 045061 278 YDS-----RFRAYASMTFHFD-RADFKVEPTYMYFIFQNEGYFCVAISFS----DRNSVVGAWQQQDTRFVYDLNTGTIQ 347 (359)
Q Consensus 278 ~~~-----~~~~~p~l~~~f~-g~~~~i~~~~y~~~~~~~~~~C~~~~~~----~~~~iLG~~fl~~~y~vfD~~~~~ig 347 (359)
.+. ....+|+|+|+|. |+.++++|++|++... ++.+|++|... .+..|||..+|+++.++||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeCCcceeeeccceeeecc-CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 998 3689999999999 6899999999999887 77999999877 26889999999999999999999999
Q ss_pred Eee
Q 045061 348 FVP 350 (359)
Q Consensus 348 fa~ 350 (359)
|++
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=3.8e-23 Score=159.81 Aligned_cols=106 Identities=34% Similarity=0.586 Sum_probs=94.4
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCC-CCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEEeCC
Q 045061 9 VDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIF-NPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAG 87 (359)
Q Consensus 9 ~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y-~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~y~~ 87 (359)
++|.||||||++.|+|||||+++||++..|..|.+..++.| ++..|++++... |.|.+.|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~-----------------~~~~~~Y~~ 63 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNG-----------------CTFSITYGT 63 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCC-----------------cEEEEEeCC
Confidence 47999999999999999999999999999998887776667 999999999877 799999999
Q ss_pred CCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCC--CCCcceEEec
Q 045061 88 GASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSF--DGNIAGILGF 137 (359)
Q Consensus 88 g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~--~~~~~GilGL 137 (359)
|+ +.|.++.|+|+|+ ...++++.||+++...+ .+ ....+|||||
T Consensus 64 g~-~~g~~~~D~v~ig----~~~~~~~~fg~~~~~~~-~~~~~~~~~GilGL 109 (109)
T cd05470 64 GS-LSGGLSTDTVSIG----DIEVVGQAFGCATDEPG-ATFLPALFDGILGL 109 (109)
T ss_pred Ce-EEEEEEEEEEEEC----CEEECCEEEEEEEecCC-ccccccccccccCC
Confidence 97 8899999999998 46789999999999876 32 2478999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.13 E-value=1.1e-05 Score=59.98 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=65.3
Q ss_pred ceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEE
Q 045061 5 YFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRIN 84 (359)
Q Consensus 5 ~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~ 84 (359)
+.|++++.|+ .+++++++|||++.+|+.......+.. .+ .. .......
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~~----~~--------~~------------------~~~~~~~ 48 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLGL----PL--------TL------------------GGKVTVQ 48 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcCC----Cc--------cC------------------CCcEEEE
Confidence 4689999999 799999999999999996533222110 00 00 0345566
Q ss_pred eCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCCCCcceEEecC
Q 045061 85 YAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFS 138 (359)
Q Consensus 85 y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg 138 (359)
..+|.........+.+++++ ++++++.+..+..... ..+||||+.
T Consensus 49 ~~~G~~~~~~~~~~~i~ig~----~~~~~~~~~v~d~~~~-----~~~gIlG~d 93 (96)
T cd05483 49 TANGRVRAARVRLDSLQIGG----ITLRNVPAVVLPGDAL-----GVDGLLGMD 93 (96)
T ss_pred ecCCCccceEEEcceEEECC----cEEeccEEEEeCCccc-----CCceEeChH
Confidence 67777666677789999994 6777788777665432 478999985
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.33 E-value=0.0017 Score=50.69 Aligned_cols=95 Identities=14% Similarity=0.085 Sum_probs=64.0
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEE
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHR 82 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~ 82 (359)
.+|.|++++.|. .+++.+++|||++.+.+......... .++.. .. ....
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~~Lg------l~~~~------~~-----------------~~~~ 56 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQRLG------LDLNR------LG-----------------YTVT 56 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC------CCccc------CC-----------------ceEE
Confidence 578999999998 68999999999999988543221110 01110 00 2344
Q ss_pred EEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCCCCcceEEecC
Q 045061 83 INYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFS 138 (359)
Q Consensus 83 ~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg 138 (359)
+.-.+|......+..|.+.+| .+...++...++..... .+|+||+.
T Consensus 57 ~~ta~G~~~~~~~~l~~l~iG----~~~~~nv~~~v~~~~~~------~~~LLGm~ 102 (121)
T TIGR02281 57 VSTANGQIKAARVTLDRVAIG----GIVVNDVDAMVAEGGAL------SESLLGMS 102 (121)
T ss_pred EEeCCCcEEEEEEEeCEEEEC----CEEEeCcEEEEeCCCcC------CceEcCHH
Confidence 445677645556789999999 58888999877654322 37999983
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.68 E-value=0.019 Score=41.67 Aligned_cols=89 Identities=22% Similarity=0.194 Sum_probs=53.8
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEEeCCC
Q 045061 9 VDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAGG 88 (359)
Q Consensus 9 ~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~y~~g 88 (359)
+++.|+ .+++.+++|||++.+.+....+..... .+.... ......-.+|
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~~l~~------~~~~~~-----------------------~~~~~~~~~g 49 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAKKLGL------KPRPKS-----------------------VPISVSGAGG 49 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHHHcCC------CCcCCc-----------------------eeEEEEeCCC
Confidence 356777 689999999999988885433322100 000000 1233334455
Q ss_pred CeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCCCCcceEEecC
Q 045061 89 ASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFS 138 (359)
Q Consensus 89 ~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg 138 (359)
.........+.+++++ .++.++.+-.... ....+||||+-
T Consensus 50 ~~~~~~~~~~~i~ig~----~~~~~~~~~v~~~------~~~~~~iLG~d 89 (90)
T PF13650_consen 50 SVTVYRGRVDSITIGG----ITLKNVPFLVVDL------GDPIDGILGMD 89 (90)
T ss_pred CEEEEEEEEEEEEECC----EEEEeEEEEEECC------CCCCEEEeCCc
Confidence 5455566777889984 6777777766662 22468999973
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=96.14 E-value=0.016 Score=45.31 Aligned_cols=95 Identities=11% Similarity=0.026 Sum_probs=53.4
Q ss_pred cEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEE
Q 045061 229 GCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIF 308 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~ 308 (359)
.+++|||++...++++..+++-=......... . ... ......+.. ......+.+++..+.+ .-.++
T Consensus 29 ~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~-~-~~~--g~g~~~~~g------~~~~~~l~i~~~~~~~--~~~Vl-- 94 (124)
T cd05479 29 KAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQ-G-IAK--GVGTQKILG------RIHLAQVKIGNLFLPC--SFTVL-- 94 (124)
T ss_pred EEEEeCCCceEEeCHHHHHHcCCccccCcceE-E-EEe--cCCCcEEEe------EEEEEEEEECCEEeee--EEEEE--
Confidence 59999999999999998877431111000000 0 000 001111211 2344455555554321 11111
Q ss_pred cCCCeEEEEEEcC-CCceeecccceeeeEEEEECCCCEEEE
Q 045061 309 QNEGYFCVAISFS-DRNSVVGAWQQQDTRFVYDLNTGTIQF 348 (359)
Q Consensus 309 ~~~~~~C~~~~~~-~~~~iLG~~fl~~~y~vfD~~~~~igf 348 (359)
+. .-..|||..||+.+-.+.|+.+++|-+
T Consensus 95 -----------~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 95 -----------EDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred -----------CCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 11 235699999999999999999998753
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.10 E-value=0.27 Score=38.37 Aligned_cols=33 Identities=9% Similarity=0.027 Sum_probs=27.1
Q ss_pred ceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCC
Q 045061 5 YFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCV 39 (359)
Q Consensus 5 ~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~ 39 (359)
..+++++.|+ .+++.+++|||++.+++....+.
T Consensus 15 ~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~ 47 (124)
T cd05479 15 PMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE 47 (124)
T ss_pred eEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH
Confidence 4578899999 78999999999999999654433
No 32
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=95.03 E-value=0.018 Score=45.72 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=55.9
Q ss_pred cEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEE
Q 045061 229 GCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIF 308 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~ 308 (359)
.++||||++..++.+....++--.+... ..+ + ... .......|.. ..+.+.+.++|..+.... ++.+.
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~~l~~~~l-~~~-~-~V~-~~g~~~~~~~------~~~~~~~~i~g~~~~~dl--~vl~l 101 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKLGLPLEPL-PRP-I-VVS-APGGSINCEG------VCPDVPLSIQGHEFVVDL--LVLDL 101 (135)
T ss_pred EEEEecCCCcEEccHHHHHhcCCEEEEc-cCe-e-EEe-cccccccccc------eeeeEEEEECCeEEEeee--EEecc
Confidence 5999999999998877665532111000 000 0 000 0111222322 445555666554432211 11111
Q ss_pred cCCCeEEEEEEcCCCceeecccceeeeEEEEECCCCEEEEeeC
Q 045061 309 QNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVPE 351 (359)
Q Consensus 309 ~~~~~~C~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~~ 351 (359)
.+-..|||.++|+.+..+-|..+++|-|...
T Consensus 102 ------------~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 102 ------------GGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ------------cceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 1125799999999999999999999999753
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.75 E-value=0.14 Score=37.48 Aligned_cols=29 Identities=28% Similarity=0.213 Sum_probs=25.0
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeEeCCC
Q 045061 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQCLP 37 (359)
Q Consensus 7 y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~ 37 (359)
|++++.|+ .+++.+++||||+.+++....
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57889999 899999999999999996543
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=91.95 E-value=0.4 Score=40.24 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceE
Q 045061 2 EKNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVH 81 (359)
Q Consensus 2 ~~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~ 81 (359)
+.+|-|.++..|- .|++.+++|||-+..-+..+.... =-++.... + -++
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R------lGid~~~l------~-----------------y~~ 149 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR------LGIDLNSL------D-----------------YTI 149 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH------hCCCcccc------C-----------------Cce
Confidence 4688899999998 899999999999988886543211 11222211 1 245
Q ss_pred EEEeCCCCeEEEEEEEEEEEEecCCceeecCceEEEceeCCCCCCCCCCcceEEecCCCCCchHHhhh
Q 045061 82 RINYAGGASASGLVSTETFTFHLKNKLVCVPGVIFGCSNDNRDFSFDGNIAGILGFSVSPFSLLGQLK 149 (359)
Q Consensus 82 ~~~y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~ 149 (359)
.+.-.+|..-...+-.|.|.|| .+...++.--++..... ..-+||| ||+++|.
T Consensus 150 ~v~TANG~~~AA~V~Ld~v~IG----~I~~~nV~A~V~~~g~L------~~sLLGM-----SfL~rL~ 202 (215)
T COG3577 150 TVSTANGRARAAPVTLDRVQIG----GIRVKNVDAMVAEDGAL------DESLLGM-----SFLNRLS 202 (215)
T ss_pred EEEccCCccccceEEeeeEEEc----cEEEcCchhheecCCcc------chhhhhH-----HHHhhcc
Confidence 5666788856668999999999 46676655433322221 2344554 6777765
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=91.36 E-value=0.42 Score=33.31 Aligned_cols=34 Identities=21% Similarity=0.084 Sum_probs=29.6
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCC
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPC 38 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c 38 (359)
..+.+++.+.|| .+.+.+++|||++...+....+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 468899999999 6999999999999999866444
No 36
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=89.50 E-value=6.5 Score=36.37 Aligned_cols=174 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred cEE-EEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEEeCCCCeEEEEEE
Q 045061 18 KSE-FLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVS 96 (359)
Q Consensus 18 Q~~-~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~y~~g~~~~G~~~ 96 (359)
|.+ ++++||||.-+-|..+.-.. ......-...+....-..|.. |.+|. .=|.+.
T Consensus 39 qTIdnvlVDTGS~GLRi~~sAl~~---~l~~~Lp~~t~~g~~laEC~~--------------------F~sgy-tWGsVr 94 (370)
T PF11925_consen 39 QTIDNVLVDTGSYGLRIFASALPS---SLAGSLPQQTGGGAPLAECAQ--------------------FASGY-TWGSVR 94 (370)
T ss_pred eeeCcEEEeccchhhhHHHhhhch---hhhccCCcccCCCcchhhhhh--------------------ccCcc-cccceE
Q ss_pred EEEEEEecCCceeecCceEEEceeC----------------CCCCCCCCCcceEEecCCCCCc-----------------
Q 045061 97 TETFTFHLKNKLVCVPGVIFGCSND----------------NRDFSFDGNIAGILGFSVSPFS----------------- 143 (359)
Q Consensus 97 ~D~v~i~~~~~~~~~~~~~fg~~~~----------------~~~~~~~~~~~GilGLg~~~~s----------------- 143 (359)
+-.|+|+ +.+..++++.++.+ ... ......+||||+|.-...
T Consensus 95 ~AdV~ig----ge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t-~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C 169 (370)
T PF11925_consen 95 TADVTIG----GETASSIPIQVIGDSAAPSVPSSCSNSGASMNT-VADLGANGILGIGPFPYDCGAACAQSALPGNYYSC 169 (370)
T ss_pred EEEEEEc----CeeccccCEEEEcCCCCCCCCchhhcCCCCCCC-cccccCceEEeecCCccccCchhhcccCCCceEEC
Q ss_pred ------------hHHhhhhcCCCceEEecc-----------ccCCCCCcceeEEECCCCcc---CCCCceeeeeecCCCC
Q 045061 144 ------------LLGQLKSTAQGLFSYCLV-----------YAYREMEATSILRFGKDANI---QRKDMKTIRMFVDRSS 197 (359)
Q Consensus 144 ------------~~~ql~~~~~~~fs~~l~-----------~~~~~~~~~g~l~~Gg~d~~---~~~~i~~~~~~~~~~~ 197 (359)
+-+|.. .++..+-.+ +........|.|+||---.. ..+.....+... .+
T Consensus 170 ~~~~sCt~t~v~~~~QV~---NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~--~G 244 (370)
T PF11925_consen 170 PSGGSCTSTTVPLAQQVA---NPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDS--NG 244 (370)
T ss_pred CCCCCeecccchhhhccc---CcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecC--Cc
Q ss_pred cEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecCCcccccCch
Q 045061 198 HYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRG 244 (359)
Q Consensus 198 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt~~~~lp~~ 244 (359)
+.....++-.+. ...||||+.-.++|..
T Consensus 245 ~~tt~~~G~t~~-------------------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 245 DFTTTFNGQTYS-------------------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred eEEEEecCceee-------------------eeeEecCCceeeccCC
No 37
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=89.25 E-value=1 Score=34.91 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=27.4
Q ss_pred CCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecCCcccccCchHHHHH
Q 045061 196 SSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVV 249 (359)
Q Consensus 196 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l 249 (359)
.+++.+. +.|+|+.+ .++||||++.+.++++..+++
T Consensus 9 ~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 5566544 45677643 599999999999999988775
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=86.55 E-value=1.1 Score=33.13 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=23.4
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeEeCCC
Q 045061 8 TVDVLFGTPSKSEFLLFDTGSYLIWTQCLP 37 (359)
Q Consensus 8 ~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~ 37 (359)
+.+|.+. .+++.+++||||+.+.++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5677888 789999999999999996543
No 39
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=86.09 E-value=1.8 Score=32.80 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=20.9
Q ss_pred CceeecccceeeeEEEEECCCCEE
Q 045061 323 RNSVVGAWQQQDTRFVYDLNTGTI 346 (359)
Q Consensus 323 ~~~iLG~~fl~~~y~vfD~~~~~i 346 (359)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 577999999999999999987753
No 40
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.10 E-value=1.1 Score=32.08 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.9
Q ss_pred cEEEecCCcccccCchHHHHH
Q 045061 229 GCMIDTGAIATFIQRGPYEVV 249 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l 249 (359)
.+++|||++.+.++++.++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 599999999999998888776
No 41
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.05 E-value=1.9 Score=29.99 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=19.5
Q ss_pred cEEEecCCcccccCchHHHHH
Q 045061 229 GCMIDTGAIATFIQRGPYEVV 249 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l 249 (359)
.+++|||++..+++.++.++|
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 499999999999999999887
No 42
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=82.66 E-value=3.2 Score=33.69 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=18.5
Q ss_pred cEEEecCCcccccCchHHHHHH
Q 045061 229 GCMIDTGAIATFIQRGPYEVVM 250 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l~ 250 (359)
.+++|||++..++-.++.++|-
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEeCCCccceeehhhHHhhC
Confidence 6999999999998888777653
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=81.47 E-value=1.9 Score=31.33 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.6
Q ss_pred cEEEecCCcccccCchHHHHHH
Q 045061 229 GCMIDTGAIATFIQRGPYEVVM 250 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l~ 250 (359)
.+++|||++...++++.+.++-
T Consensus 13 ~~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 13 KFQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEEcCCcceEEeCHHHHHHhC
Confidence 4999999999999999988763
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=80.82 E-value=2.2 Score=30.76 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=21.7
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeEeCCCC
Q 045061 10 DVLFGTPSKSEFLLFDTGSYLIWTQCLPC 38 (359)
Q Consensus 10 ~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c 38 (359)
.+.|. .+++++++|||++.+.+....+
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a 28 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLG 28 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHh
Confidence 45666 7899999999999999965443
No 45
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=79.79 E-value=3.3 Score=35.00 Aligned_cols=96 Identities=13% Similarity=0.093 Sum_probs=52.1
Q ss_pred cEEEecCCcccccCchHHHHHHHHHHHHhhccCccccCCCccccccceecccCccccceEEEEEcCcEEEEcCCceEEEE
Q 045061 229 GCMIDTGAIATFIQRGPYEVVMRHFDEHFTSFGRQRMHNASEDWEYCYRYDSRFRAYASMTFHFDRADFKVEPTYMYFIF 308 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~p~l~~~f~g~~~~i~~~~y~~~~ 308 (359)
.++||||++.=.....+.-. +.+...-. +- .....+.....-. ...+.+.+.+++..|.+|- ++..
T Consensus 22 ~~~vDTGAt~C~~~~~iiP~--e~we~~~~-~i--~v~~an~~~~~i~------~~~~~~~i~I~~~~F~IP~---iYq~ 87 (201)
T PF02160_consen 22 HCYVDTGATICCASKKIIPE--EYWEKSKK-PI--KVKGANGSIIQIN------KKAKNGKIQIADKIFRIPT---IYQQ 87 (201)
T ss_pred EEEEeCCCceEEecCCcCCH--HHHHhCCC-cE--EEEEecCCceEEE------EEecCceEEEccEEEeccE---EEEe
Confidence 58999999987766555422 11211110 00 0111111111111 2567777777777776652 2211
Q ss_pred cCCCeEEEEEEcCCCceeecccceeeeEEEEECCCCEEEEee
Q 045061 309 QNEGYFCVAISFSDRNSVVGAWQQQDTRFVYDLNTGTIQFVP 350 (359)
Q Consensus 309 ~~~~~~C~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfa~ 350 (359)
.++-..|||.+|+|.|+=-...+ .+|-|..
T Consensus 88 -----------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 88 -----------ESGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred -----------cCCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 12346799999999887555554 5777765
No 46
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.41 E-value=4.2 Score=29.38 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=18.5
Q ss_pred cEEEecCCcccccCchHHHHH
Q 045061 229 GCMIDTGAIATFIQRGPYEVV 249 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l 249 (359)
.+++|||++.+.++....+++
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 599999999999999877765
No 47
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.32 E-value=3.3 Score=29.83 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=19.2
Q ss_pred cEEEecCCcccccCchHHHHH
Q 045061 229 GCMIDTGAIATFIQRGPYEVV 249 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l 249 (359)
.+++|||++.+.+++...+++
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 599999999999999998876
No 48
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=75.05 E-value=4.4 Score=29.38 Aligned_cols=25 Identities=20% Similarity=0.029 Sum_probs=21.1
Q ss_pred EEEeCCCCcEEEEEEEcCCCceeEeCC
Q 045061 10 DVLFGTPSKSEFLLFDTGSYLIWTQCL 36 (359)
Q Consensus 10 ~i~iGtp~Q~~~l~~DTgS~~~wv~~~ 36 (359)
.+.++ .|.+.+++|||+..|.+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45667 89999999999999999653
No 49
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=68.40 E-value=5.6 Score=29.30 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.8
Q ss_pred cEEEecCCcccccCchHH
Q 045061 229 GCMIDTGAIATFIQRGPY 246 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~ 246 (359)
.+++|||+..+.++++.+
T Consensus 18 ~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 18 KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEETTBSSEEESSGGS
T ss_pred EEEEecCCCcceeccccc
Confidence 599999999999998644
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=64.30 E-value=9.7 Score=30.99 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=23.7
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceeEeCC
Q 045061 8 TVDVLFGTPSKSEFLLFDTGSYLIWTQCL 36 (359)
Q Consensus 8 ~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~ 36 (359)
+..+.++....++.++|||||+...+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 44566777789999999999999998653
No 51
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=62.03 E-value=8 Score=28.36 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.3
Q ss_pred cEEEecCCcccccCchHHHHHHH
Q 045061 229 GCMIDTGAIATFIQRGPYEVVMR 251 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~~~l~~ 251 (359)
.+.+|||++...+|...++++-.
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~~ 34 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLTP 34 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhcc
Confidence 69999999999999998888653
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=61.10 E-value=4.3 Score=31.57 Aligned_cols=36 Identities=11% Similarity=0.055 Sum_probs=25.0
Q ss_pred cceEEEEEEeCCCCcEEEEEEEcCCCceeEeCCCCCCC
Q 045061 4 NYFYTVDVLFGTPSKSEFLLFDTGSYLIWTQCLPCVNC 41 (359)
Q Consensus 4 ~~~y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~~~c~~c 41 (359)
....+++++++ .+++++++|||...+.+..+-+..|
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 45678999999 8999999999999999865444454
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=56.30 E-value=12 Score=29.12 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=22.2
Q ss_pred EEEECCEEeecCCCccccccCCCCcEEEecCCcccccCchHHHH
Q 045061 205 DISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEV 248 (359)
Q Consensus 205 ~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~ 248 (359)
.++++|+.+ .|.||||+..+.++.+..++
T Consensus 28 ~~~ing~~v---------------kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGVPV---------------KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTEEE---------------EEEEETT-SS-EEEHHHHHH
T ss_pred EEEECCEEE---------------EEEEeCCCCccccCHHHHHH
Confidence 456777765 59999999999999988887
No 54
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=56.16 E-value=82 Score=23.48 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=21.8
Q ss_pred EE-EEEEcCC-CceeecccceeeeEEEEECCC
Q 045061 314 FC-VAISFSD-RNSVVGAWQQQDTRFVYDLNT 343 (359)
Q Consensus 314 ~C-~~~~~~~-~~~iLG~~fl~~~y~vfD~~~ 343 (359)
.| +.++... -..+||.-+||++--.-|+++
T Consensus 72 ~CSftVld~~~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 72 ECSAQVVDDNEKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred eEEEEEEcCCCcceEeeHHHHhhcceeeeccC
Confidence 36 3455544 366999999999998888763
No 55
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.50 E-value=7.8 Score=29.90 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.2
Q ss_pred cEEEecCCc-ccccCchHHHHHH
Q 045061 229 GCMIDTGAI-ATFIQRGPYEVVM 250 (359)
Q Consensus 229 ~~iiDtGt~-~~~lp~~~~~~l~ 250 (359)
..++|||.+ ++.+|+.+++++-
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhcC
Confidence 458999999 9999999998864
No 56
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=51.65 E-value=22 Score=30.17 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=31.1
Q ss_pred eeeecCCCCcEEEEEeEEEECCEEeecCCCccccccCCCCcEEEecCCcccccCchHHHHH
Q 045061 189 IRMFVDRSSHYYLSLQDISVADHRIGFAPGTFALRRNGTGGCMIDTGAIATFIQRGPYEVV 249 (359)
Q Consensus 189 ~~~~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~iiDtGt~~~~lp~~~~~~l 249 (359)
+.+..+..+||.++ ..|||+.+ ..++|||++-+.++++..+++
T Consensus 96 v~Lak~~~GHF~a~---~~VNGk~v---------------~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 96 VSLAKSRDGHFEAN---GRVNGKKV---------------DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEEecCCCcEEEE---EEECCEEE---------------EEEEecCcceeecCHHHHHHh
Confidence 33333336677655 47888876 489999999999998877664
No 57
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=51.03 E-value=80 Score=29.26 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=31.3
Q ss_pred eEE-EEEEcCCC-ceeecccceeeeEEEEECCCCEEEEeeCCC
Q 045061 313 YFC-VAISFSDR-NSVVGAWQQQDTRFVYDLNTGTIQFVPENC 353 (359)
Q Consensus 313 ~~C-~~~~~~~~-~~iLG~~fl~~~y~vfD~~~~~igfa~~~c 353 (359)
..| +.++...+ ...||...||.+--.-|++++++-++...-
T Consensus 306 l~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 306 LPCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred eccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 346 34555443 568999999999999999999988877543
No 58
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=39.94 E-value=41 Score=25.32 Aligned_cols=64 Identities=17% Similarity=0.060 Sum_probs=38.6
Q ss_pred EEEEeCCCC----cEEEEEEEcCCCcee-EeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEE
Q 045061 9 VDVLFGTPS----KSEFLLFDTGSYLIW-TQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRI 83 (359)
Q Consensus 9 ~~i~iGtp~----Q~~~l~~DTgS~~~w-v~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~ 83 (359)
+++.+..|. -++.+++|||.+..- ++...... -+ ..+. ...+.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~~-----lg-l~~~--------------------------~~~~~ 49 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVNK-----LG-LPEL--------------------------DQRRV 49 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHHH-----cC-CCcc--------------------------cCcEE
Confidence 578888872 378999999999664 43321110 00 0111 12345
Q ss_pred EeCCCCeEEEEEEEEEEEEec
Q 045061 84 NYAGGASASGLVSTETFTFHL 104 (359)
Q Consensus 84 ~y~~g~~~~G~~~~D~v~i~~ 104 (359)
.-.+|....-....+++.+++
T Consensus 50 ~tA~G~~~~~~v~~~~v~igg 70 (107)
T TIGR03698 50 YLADGREVLTDVAKASIIING 70 (107)
T ss_pred EecCCcEEEEEEEEEEEEECC
Confidence 556776566778888888884
No 59
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=37.17 E-value=19 Score=26.21 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=18.8
Q ss_pred CCcEEEecCCcccccCchHHHH
Q 045061 227 TGGCMIDTGAIATFIQRGPYEV 248 (359)
Q Consensus 227 ~~~~iiDtGt~~~~lp~~~~~~ 248 (359)
+...++|||+....+|....+.
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~~ 30 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTKK 30 (89)
T ss_pred CcEEEEeCCCceEeeccccccc
Confidence 4579999999999999887665
No 60
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=27.08 E-value=2.5e+02 Score=20.43 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=35.8
Q ss_pred cEEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCceeecCCCCCCCCCCCCCCCCCceEEEEeCCCCeEEEEEEE
Q 045061 18 KSEFLLFDTGSYLIWTQCLPCVNCFNQSAPIFNPNASSTYKRIPCDDLICRRPPFRCENGQCVHRINYAGGASASGLVST 97 (359)
Q Consensus 18 Q~~~l~~DTgS~~~wv~~~~c~~c~~~~~~~y~~~~Sst~~~~~~~~~~c~~~~~~c~~~~~~~~~~y~~g~~~~G~~~~ 97 (359)
-...+++|||+....+|...+..- .+. +.+.+.-.+|+ ..-.+++
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~~~---------------~~~-------------------~~~~l~AANgt-~I~tyG~ 52 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTKKS---------------LKP-------------------SPLTLQAANGT-PIATYGT 52 (89)
T ss_pred CCcEEEEeCCCceEeecccccccc---------------ccC-------------------CceEEEeCCCC-eEeeeee
Confidence 457899999999999976544220 011 35666667777 7778888
Q ss_pred EEEEEec
Q 045061 98 ETFTFHL 104 (359)
Q Consensus 98 D~v~i~~ 104 (359)
-.+.+.-
T Consensus 53 ~~l~ldl 59 (89)
T cd06094 53 RSLTLDL 59 (89)
T ss_pred EEEEEEc
Confidence 8888875
No 61
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=25.61 E-value=67 Score=28.59 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.7
Q ss_pred cEEEecCCcccccCchHH
Q 045061 229 GCMIDTGAIATFIQRGPY 246 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~ 246 (359)
.++||||++.+++|..-.
T Consensus 15 ~v~~DTGS~~~wv~~~~c 32 (278)
T cd06097 15 NLDLDTGSSDLWVFSSET 32 (278)
T ss_pred EEEEeCCCCceeEeeCCC
Confidence 599999999999997644
No 62
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=25.48 E-value=1.5e+02 Score=23.33 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.0
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceeEeC
Q 045061 7 YTVDVLFGTPSKSEFLLFDTGSYLIWTQC 35 (359)
Q Consensus 7 y~~~i~iGtp~Q~~~l~~DTgS~~~wv~~ 35 (359)
-.+.+.|. .++..+++|+|++...+..
T Consensus 22 i~g~~~I~--~~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 22 ITGTFLIN--SIPASVLIDSGATHSFISS 48 (135)
T ss_pred EEEEEEec--cEEEEEEEecCCCcEEccH
Confidence 45566777 5899999999999999954
No 63
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=24.64 E-value=62 Score=29.68 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=15.5
Q ss_pred cEEEecCCcccccCchHH
Q 045061 229 GCMIDTGAIATFIQRGPY 246 (359)
Q Consensus 229 ~~iiDtGt~~~~lp~~~~ 246 (359)
.++||||++.+++|....
T Consensus 18 ~v~~DTGS~~~wv~~~~C 35 (326)
T cd06096 18 SLILDTGSSSLSFPCSQC 35 (326)
T ss_pred EEEEeCCCCceEEecCCC
Confidence 599999999999987643
No 64
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=23.99 E-value=91 Score=27.70 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=22.6
Q ss_pred ceEEEE---EEeCC---CCcEEEEEEEcCCCceeEeCC
Q 045061 5 YFYTVD---VLFGT---PSKSEFLLFDTGSYLIWTQCL 36 (359)
Q Consensus 5 ~~y~~~---i~iGt---p~Q~~~l~~DTgS~~~wv~~~ 36 (359)
..|.+. |.||. +.....+++|||++.+.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456555 57773 233467999999999999753
No 65
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=23.96 E-value=88 Score=28.51 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=21.9
Q ss_pred ceEEEE---EEeCCC-----CcEEEEEEEcCCCceeEeC
Q 045061 5 YFYTVD---VLFGTP-----SKSEFLLFDTGSYLIWTQC 35 (359)
Q Consensus 5 ~~y~~~---i~iGtp-----~Q~~~l~~DTgS~~~wv~~ 35 (359)
++|.++ |.||.. .+...+++|||++.+++|.
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~ 226 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPT 226 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCH
Confidence 455554 577742 2346799999999999975
No 66
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=20.84 E-value=1.2e+02 Score=27.48 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=25.1
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCce
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYLI 31 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~~ 31 (359)
.+..|.+++.+|.-..+++.++|||..+.
T Consensus 154 ~~~~~~v~i~~~~~~~~~~allDTGN~L~ 182 (293)
T PF03419_consen 154 KDYLYPVTIEIGGKKIELKALLDTGNQLR 182 (293)
T ss_pred CcEEEEEEEEECCEEEEEEEEEECCCccc
Confidence 46779999999988888999999999863
No 67
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=20.64 E-value=1.2e+02 Score=27.54 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=25.0
Q ss_pred CcceEEEEEEeCCCCcEEEEEEEcCCCc
Q 045061 3 KNYFYTVDVLFGTPSKSEFLLFDTGSYL 30 (359)
Q Consensus 3 ~~~~y~~~i~iGtp~Q~~~l~~DTgS~~ 30 (359)
.+..|-++|.++.-..+++.++|||..+
T Consensus 155 ~~~~~~v~i~~~g~~~~~~alvDTGN~L 182 (288)
T TIGR02854 155 DKQIYELEICLDGKKVTIKGFLDTGNQL 182 (288)
T ss_pred hceEEEEEEEECCEEEEEEEEEecCCcc
Confidence 4678999999999889999999999986
No 68
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=20.55 E-value=98 Score=27.22 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=25.0
Q ss_pred cceEEEE---EEeCC-----CCcEEEEEEEcCCCceeEeCCCC
Q 045061 4 NYFYTVD---VLFGT-----PSKSEFLLFDTGSYLIWTQCLPC 38 (359)
Q Consensus 4 ~~~y~~~---i~iGt-----p~Q~~~l~~DTgS~~~wv~~~~c 38 (359)
..+|.+. |.+|. ......++||||++.++++...+
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 4455554 46664 34667999999999999986543
No 69
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=20.17 E-value=87 Score=27.97 Aligned_cols=14 Identities=21% Similarity=0.537 Sum_probs=13.4
Q ss_pred cEEEecCCcccccC
Q 045061 229 GCMIDTGAIATFIQ 242 (359)
Q Consensus 229 ~~iiDtGt~~~~lp 242 (359)
.+++|||++.+++|
T Consensus 17 ~v~~DTgS~~~wv~ 30 (295)
T cd05474 17 TVLLDTGSSDLWVP 30 (295)
T ss_pred EEEEeCCCCcceee
Confidence 59999999999999
Done!