Query 045063
Match_columns 175
No_of_seqs 125 out of 1239
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 09:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.4E-37 2.9E-42 253.3 17.4 173 3-175 248-424 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 7.7E-36 1.7E-40 247.8 18.5 174 2-175 210-387 (857)
3 PLN03081 pentatricopeptide (PP 100.0 2.8E-35 6.1E-40 239.8 18.0 174 2-175 146-323 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 2.5E-34 5.4E-39 238.8 17.5 173 3-175 110-286 (857)
5 PLN03218 maturation of RBCL 1; 100.0 4.2E-34 9.1E-39 238.0 17.8 174 2-175 460-647 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 7.7E-34 1.7E-38 236.4 17.7 163 13-175 582-752 (1060)
7 PF13041 PPR_2: PPR repeat fam 99.7 6.3E-17 1.4E-21 88.4 5.7 50 39-88 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.6 2.4E-15 5.2E-20 82.1 5.4 50 74-123 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.5 3.3E-13 7.2E-18 103.5 14.1 158 16-175 186-351 (389)
10 PRK11788 tetratricopeptide rep 99.4 1.4E-11 3.1E-16 94.5 15.0 154 16-170 113-277 (389)
11 KOG4422 Uncharacterized conser 99.4 1.5E-11 3.2E-16 92.8 12.6 127 39-169 205-340 (625)
12 PF12854 PPR_1: PPR repeat 99.2 1.3E-11 2.7E-16 61.4 4.0 34 105-138 1-34 (34)
13 TIGR02917 PEP_TPR_lipo putativ 99.2 1.1E-09 2.4E-14 91.3 15.9 153 16-170 573-731 (899)
14 TIGR02917 PEP_TPR_lipo putativ 99.2 1.9E-09 4.2E-14 89.8 16.1 155 16-171 607-799 (899)
15 KOG4422 Uncharacterized conser 99.2 4.9E-10 1.1E-14 84.7 10.3 151 13-167 210-381 (625)
16 PF12854 PPR_1: PPR repeat 99.1 1.6E-10 3.4E-15 57.4 3.4 31 139-169 4-34 (34)
17 TIGR02521 type_IV_pilW type IV 99.1 2.3E-08 5.1E-13 70.5 15.4 154 16-170 37-197 (234)
18 PF13812 PPR_3: Pentatricopept 99.0 6.1E-10 1.3E-14 55.3 4.4 34 142-175 1-34 (34)
19 TIGR02521 type_IV_pilW type IV 99.0 8E-08 1.7E-12 67.8 15.2 155 16-171 71-232 (234)
20 TIGR00756 PPR pentatricopeptid 98.9 1.8E-09 4E-14 53.8 4.3 33 143-175 1-33 (35)
21 TIGR00756 PPR pentatricopeptid 98.9 1.7E-09 3.6E-14 53.9 3.7 35 42-76 1-35 (35)
22 PF13429 TPR_15: Tetratricopep 98.9 1.1E-08 2.3E-13 75.5 8.9 150 16-167 116-273 (280)
23 PF13812 PPR_3: Pentatricopept 98.9 2.8E-09 6.1E-14 52.9 3.8 34 41-74 1-34 (34)
24 PF13429 TPR_15: Tetratricopep 98.8 3.9E-08 8.5E-13 72.5 10.0 152 16-170 84-242 (280)
25 PF01535 PPR: PPR repeat; Int 98.8 6.7E-09 1.5E-13 50.3 3.5 31 143-173 1-31 (31)
26 TIGR00990 3a0801s09 mitochondr 98.8 4.3E-07 9.3E-12 74.1 16.0 153 16-170 337-495 (615)
27 PRK15174 Vi polysaccharide exp 98.8 7.1E-07 1.5E-11 73.3 16.3 120 49-170 220-346 (656)
28 PRK15174 Vi polysaccharide exp 98.8 9.1E-07 2E-11 72.6 16.2 154 16-171 218-381 (656)
29 PRK12370 invasion protein regu 98.7 1.1E-06 2.4E-11 70.8 15.6 117 20-137 348-467 (553)
30 PF04733 Coatomer_E: Coatomer 98.7 5.2E-07 1.1E-11 66.8 12.6 147 18-170 110-264 (290)
31 KOG1070 rRNA processing protei 98.7 4.7E-07 1E-11 77.0 13.4 165 10-175 1497-1667(1710)
32 PRK09782 bacteriophage N4 rece 98.7 1.7E-06 3.7E-11 73.6 16.5 143 21-167 520-668 (987)
33 TIGR00990 3a0801s09 mitochondr 98.7 1.3E-06 2.9E-11 71.2 15.1 150 19-169 408-569 (615)
34 PF01535 PPR: PPR repeat; Int 98.7 3E-08 6.4E-13 47.9 3.0 31 42-72 1-31 (31)
35 PRK12370 invasion protein regu 98.6 2.7E-06 5.9E-11 68.6 15.8 146 22-171 316-470 (553)
36 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 9.7E-07 2.1E-11 67.8 12.4 120 16-138 175-295 (395)
37 KOG4318 Bicoid mRNA stability 98.6 2.6E-07 5.7E-12 75.5 9.6 149 14-174 29-236 (1088)
38 PRK10049 pgaA outer membrane p 98.6 4E-06 8.6E-11 70.1 16.6 155 16-171 278-456 (765)
39 PRK09782 bacteriophage N4 rece 98.6 2.2E-06 4.7E-11 73.0 15.1 152 16-170 548-705 (987)
40 PF08579 RPM2: Mitochondrial r 98.6 7.1E-07 1.5E-11 55.9 8.2 81 43-123 27-116 (120)
41 PRK11447 cellulose synthase su 98.5 8.5E-06 1.8E-10 71.1 16.9 157 16-175 579-745 (1157)
42 PRK14574 hmsH outer membrane p 98.5 1.7E-05 3.8E-10 66.4 16.1 150 16-171 40-198 (822)
43 TIGR03302 OM_YfiO outer membra 98.4 1.6E-05 3.5E-10 57.0 13.6 154 16-171 39-232 (235)
44 KOG1155 Anaphase-promoting com 98.4 1.2E-05 2.7E-10 61.8 12.6 153 16-170 268-460 (559)
45 PRK14574 hmsH outer membrane p 98.4 4.3E-05 9.4E-10 64.1 16.2 154 16-170 333-512 (822)
46 KOG4318 Bicoid mRNA stability 98.4 1.2E-06 2.6E-11 71.7 6.8 91 62-160 11-101 (1088)
47 PRK10049 pgaA outer membrane p 98.4 2.9E-05 6.3E-10 65.1 15.2 150 16-168 21-176 (765)
48 PRK11447 cellulose synthase su 98.3 3E-05 6.6E-10 67.7 15.4 92 78-170 605-699 (1157)
49 PRK10747 putative protoheme IX 98.3 1.7E-05 3.8E-10 61.4 12.5 55 18-72 161-218 (398)
50 PRK11189 lipoprotein NlpI; Pro 98.3 6.3E-05 1.4E-09 56.1 14.9 153 16-172 70-266 (296)
51 COG3063 PilF Tfp pilus assembl 98.3 5.5E-05 1.2E-09 53.4 13.4 155 16-172 41-203 (250)
52 PF06239 ECSIT: Evolutionarily 98.3 7.8E-06 1.7E-10 57.2 8.9 103 26-128 30-155 (228)
53 PRK10747 putative protoheme IX 98.3 7.8E-05 1.7E-09 57.9 15.0 143 22-169 241-388 (398)
54 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 4.7E-05 1E-09 58.6 13.1 120 45-169 173-295 (395)
55 PF09976 TPR_21: Tetratricopep 98.3 0.00015 3.3E-09 48.2 14.0 125 42-167 13-143 (145)
56 KOG2003 TPR repeat-containing 98.2 4.6E-05 9.9E-10 58.9 12.5 149 22-171 502-689 (840)
57 PF10037 MRP-S27: Mitochondria 98.2 2.3E-05 4.9E-10 60.8 10.4 116 40-155 65-186 (429)
58 TIGR00540 hemY_coli hemY prote 98.2 0.00017 3.8E-09 56.1 15.3 153 18-171 126-292 (409)
59 PRK15359 type III secretion sy 98.2 8.6E-05 1.9E-09 49.4 11.6 106 31-138 14-119 (144)
60 PRK10370 formate-dependent nit 98.2 0.00018 3.9E-09 50.5 13.6 97 40-138 72-171 (198)
61 KOG1126 DNA-binding cell divis 98.2 2.3E-05 4.9E-10 62.5 9.8 155 11-170 422-585 (638)
62 KOG4626 O-linked N-acetylgluco 98.2 0.00013 2.9E-09 58.4 13.7 148 16-167 292-447 (966)
63 KOG1840 Kinesin light chain [C 98.1 0.00012 2.6E-09 58.1 13.5 155 16-170 205-395 (508)
64 PRK11189 lipoprotein NlpI; Pro 98.1 0.00057 1.2E-08 51.0 16.1 150 17-169 33-192 (296)
65 KOG4626 O-linked N-acetylgluco 98.1 0.0001 2.3E-09 59.0 12.4 152 14-169 324-483 (966)
66 PF05843 Suf: Suppressor of fo 98.1 0.00015 3.2E-09 53.7 12.7 127 42-170 2-135 (280)
67 COG2956 Predicted N-acetylgluc 98.1 0.0002 4.3E-09 53.1 13.0 151 20-171 117-278 (389)
68 KOG1840 Kinesin light chain [C 98.0 0.0002 4.3E-09 56.9 13.0 154 16-169 289-477 (508)
69 TIGR00540 hemY_coli hemY prote 98.0 0.00068 1.5E-08 52.9 15.7 141 26-168 245-396 (409)
70 PRK15359 type III secretion sy 98.0 0.00016 3.5E-09 48.1 10.5 93 78-171 26-121 (144)
71 PF10037 MRP-S27: Mitochondria 98.0 5.7E-05 1.2E-09 58.6 9.1 109 16-124 72-186 (429)
72 PRK10370 formate-dependent nit 98.0 0.0006 1.3E-08 47.9 13.5 146 16-171 22-173 (198)
73 COG3063 PilF Tfp pilus assembl 98.0 0.00053 1.1E-08 48.6 12.8 156 14-170 73-235 (250)
74 KOG1126 DNA-binding cell divis 98.0 2.2E-05 4.8E-10 62.6 6.6 148 16-169 359-550 (638)
75 PF08579 RPM2: Mitochondrial r 98.0 0.00014 3E-09 45.7 8.8 78 78-155 27-117 (120)
76 cd05804 StaR_like StaR_like; a 98.0 0.00058 1.3E-08 51.9 14.0 147 19-169 52-213 (355)
77 COG3071 HemY Uncharacterized e 98.0 0.0012 2.6E-08 50.1 15.0 149 16-169 235-388 (400)
78 KOG1155 Anaphase-promoting com 97.9 0.00058 1.2E-08 53.0 13.3 157 12-170 332-494 (559)
79 COG2956 Predicted N-acetylgluc 97.9 0.00064 1.4E-08 50.5 13.0 156 16-172 75-244 (389)
80 COG4783 Putative Zn-dependent 97.9 0.00072 1.6E-08 52.6 13.8 114 20-136 316-433 (484)
81 TIGR02552 LcrH_SycD type III s 97.9 0.00049 1.1E-08 44.8 11.4 97 40-138 16-112 (135)
82 PRK15179 Vi polysaccharide bio 97.9 0.00072 1.6E-08 56.0 14.6 127 40-170 85-216 (694)
83 PF04733 Coatomer_E: Coatomer 97.9 0.00026 5.6E-09 52.6 10.4 121 16-138 137-263 (290)
84 KOG1915 Cell cycle control pro 97.9 0.00084 1.8E-08 52.4 13.1 141 24-167 87-232 (677)
85 COG5010 TadD Flp pilus assembl 97.9 0.0016 3.4E-08 46.9 13.6 125 40-166 99-226 (257)
86 cd00189 TPR Tetratricopeptide 97.8 0.0003 6.5E-09 41.7 8.7 90 45-136 4-93 (100)
87 TIGR02552 LcrH_SycD type III s 97.8 0.00073 1.6E-08 44.0 11.1 92 78-170 19-113 (135)
88 KOG3081 Vesicle coat complex C 97.8 0.00036 7.7E-09 50.4 9.6 117 18-140 116-236 (299)
89 PF12895 Apc3: Anaphase-promot 97.8 0.00014 3.1E-09 43.6 6.6 79 89-167 2-83 (84)
90 KOG1129 TPR repeat-containing 97.8 9.8E-05 2.1E-09 54.9 6.6 120 16-137 262-384 (478)
91 cd00189 TPR Tetratricopeptide 97.8 0.00051 1.1E-08 40.6 9.0 92 79-171 3-97 (100)
92 KOG2796 Uncharacterized conser 97.8 0.00058 1.2E-08 49.5 10.1 170 2-171 128-315 (366)
93 PF05843 Suf: Suppressor of fo 97.8 0.00012 2.7E-09 54.1 7.2 123 13-138 4-134 (280)
94 PF09976 TPR_21: Tetratricopep 97.7 0.001 2.3E-08 44.1 10.5 118 16-136 18-143 (145)
95 KOG1129 TPR repeat-containing 97.7 0.0003 6.4E-09 52.4 8.2 150 16-168 229-384 (478)
96 PF06239 ECSIT: Evolutionarily 97.7 0.00012 2.6E-09 51.4 5.8 83 21-103 63-166 (228)
97 COG5010 TadD Flp pilus assembl 97.7 0.0012 2.6E-08 47.5 10.8 123 16-140 106-231 (257)
98 PRK15179 Vi polysaccharide bio 97.7 0.002 4.3E-08 53.5 13.3 131 16-149 92-229 (694)
99 PRK02603 photosystem I assembl 97.7 0.003 6.5E-08 43.2 12.2 113 40-153 34-162 (172)
100 COG4783 Putative Zn-dependent 97.6 0.0037 8E-08 48.8 13.3 122 44-169 310-435 (484)
101 COG3071 HemY Uncharacterized e 97.6 0.015 3.2E-07 44.4 16.1 129 45-174 157-295 (400)
102 CHL00033 ycf3 photosystem I as 97.6 0.0036 7.8E-08 42.6 11.8 117 40-157 34-166 (168)
103 PF12569 NARP1: NMDA receptor- 97.6 0.0082 1.8E-07 48.2 15.1 162 4-168 136-331 (517)
104 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0034 7.4E-08 39.5 10.9 96 43-138 4-103 (119)
105 PF12895 Apc3: Anaphase-promot 97.5 0.00014 3E-09 43.6 3.8 81 54-136 2-83 (84)
106 KOG2076 RNA polymerase III tra 97.5 0.008 1.7E-07 50.1 14.5 147 19-169 149-307 (895)
107 KOG1070 rRNA processing protei 97.5 0.0033 7.1E-08 54.8 12.5 125 41-167 1458-1589(1710)
108 TIGR03302 OM_YfiO outer membra 97.5 0.0096 2.1E-07 42.6 13.6 133 39-171 31-195 (235)
109 PRK14720 transcript cleavage f 97.5 0.0032 6.8E-08 53.4 12.1 130 4-138 20-176 (906)
110 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0047 1E-07 38.9 10.6 88 18-105 10-105 (119)
111 KOG3941 Intermediate in Toll s 97.4 0.0017 3.6E-08 47.6 8.7 111 28-138 52-186 (406)
112 cd05804 StaR_like StaR_like; a 97.4 0.015 3.3E-07 44.1 14.2 151 17-170 13-176 (355)
113 PF04840 Vps16_C: Vps16, C-ter 97.4 0.0058 1.3E-07 46.1 11.5 122 16-155 183-304 (319)
114 PF12921 ATP13: Mitochondrial 97.4 0.0034 7.3E-08 40.8 8.9 27 41-67 2-28 (126)
115 KOG3081 Vesicle coat complex C 97.3 0.0059 1.3E-07 44.3 10.5 120 43-171 110-236 (299)
116 PF12688 TPR_5: Tetratrico pep 97.3 0.0094 2E-07 38.3 10.6 103 49-153 9-117 (120)
117 PLN03088 SGT1, suppressor of 97.3 0.0073 1.6E-07 46.3 11.7 85 52-138 13-97 (356)
118 KOG3060 Uncharacterized conser 97.3 0.024 5.1E-07 41.0 13.2 151 16-168 58-217 (289)
119 PF14559 TPR_19: Tetratricopep 97.2 0.0019 4.1E-08 36.7 6.1 50 88-138 3-52 (68)
120 KOG2047 mRNA splicing factor [ 97.2 0.0074 1.6E-07 48.9 10.9 141 12-154 140-293 (835)
121 KOG2076 RNA polymerase III tra 97.2 0.016 3.5E-07 48.4 13.0 154 16-170 286-477 (895)
122 PLN02789 farnesyltranstransfer 97.2 0.032 6.9E-07 42.2 13.8 131 20-152 47-186 (320)
123 KOG2047 mRNA splicing factor [ 97.2 0.027 5.8E-07 45.8 13.7 158 16-175 393-582 (835)
124 KOG2002 TPR-containing nuclear 97.2 0.0034 7.3E-08 52.7 9.0 148 24-172 626-799 (1018)
125 KOG0547 Translocase of outer m 97.2 0.012 2.6E-07 46.2 11.4 150 16-168 366-563 (606)
126 PLN03088 SGT1, suppressor of 97.2 0.0067 1.4E-07 46.5 10.2 87 84-171 10-99 (356)
127 PRK02603 photosystem I assembl 97.2 0.018 4E-07 39.3 11.4 81 77-157 36-121 (172)
128 KOG1174 Anaphase-promoting com 97.2 0.016 3.5E-07 44.8 11.7 148 20-170 344-499 (564)
129 PF03704 BTAD: Bacterial trans 97.2 0.0031 6.6E-08 41.8 7.3 64 112-175 63-134 (146)
130 CHL00033 ycf3 photosystem I as 97.1 0.015 3.2E-07 39.5 10.3 111 57-167 15-138 (168)
131 KOG1173 Anaphase-promoting com 97.1 0.013 2.8E-07 46.7 10.7 156 12-169 314-516 (611)
132 KOG1128 Uncharacterized conser 97.0 0.0067 1.5E-07 49.6 9.1 156 13-170 427-615 (777)
133 PF13432 TPR_16: Tetratricopep 97.0 0.003 6.5E-08 35.6 5.4 52 119-170 5-59 (65)
134 PF12921 ATP13: Mitochondrial 97.0 0.006 1.3E-07 39.6 7.2 78 14-91 6-103 (126)
135 KOG0495 HAT repeat protein [RN 97.0 0.045 9.7E-07 44.8 13.1 151 16-169 624-780 (913)
136 KOG1914 mRNA cleavage and poly 96.9 0.058 1.3E-06 43.1 13.2 141 16-159 372-527 (656)
137 PF14559 TPR_19: Tetratricopep 96.9 0.0027 5.9E-08 36.0 4.8 51 53-104 3-53 (68)
138 KOG1915 Cell cycle control pro 96.9 0.045 9.7E-07 43.2 12.4 148 21-171 377-536 (677)
139 PF12569 NARP1: NMDA receptor- 96.9 0.016 3.5E-07 46.6 10.5 122 16-138 200-332 (517)
140 KOG2003 TPR repeat-containing 96.9 0.049 1.1E-06 42.8 12.3 112 43-157 594-709 (840)
141 KOG0985 Vesicle coat protein c 96.9 0.06 1.3E-06 46.2 13.3 113 16-136 1054-1191(1666)
142 KOG3616 Selective LIM binding 96.9 0.0096 2.1E-07 49.3 8.6 113 18-141 740-854 (1636)
143 PF03704 BTAD: Bacterial trans 96.8 0.0096 2.1E-07 39.4 7.2 69 44-113 65-138 (146)
144 KOG0495 HAT repeat protein [RN 96.8 0.16 3.6E-06 41.7 14.9 150 16-167 522-676 (913)
145 KOG1914 mRNA cleavage and poly 96.8 0.16 3.6E-06 40.7 14.5 143 26-170 347-500 (656)
146 KOG1173 Anaphase-promoting com 96.8 0.018 4E-07 45.9 9.4 138 16-154 386-534 (611)
147 KOG1128 Uncharacterized conser 96.7 0.008 1.7E-07 49.2 7.2 129 23-154 498-635 (777)
148 PRK14720 transcript cleavage f 96.7 0.055 1.2E-06 46.2 12.3 61 42-104 117-177 (906)
149 PF13424 TPR_12: Tetratricopep 96.7 0.007 1.5E-07 35.4 5.2 56 113-168 7-72 (78)
150 KOG3785 Uncharacterized conser 96.6 0.087 1.9E-06 40.2 11.6 84 85-169 402-488 (557)
151 PF13432 TPR_16: Tetratricopep 96.6 0.0077 1.7E-07 33.9 5.0 54 50-104 6-59 (65)
152 KOG2376 Signal recognition par 96.6 0.037 8E-07 44.5 10.0 126 17-150 19-149 (652)
153 KOG2002 TPR-containing nuclear 96.6 0.008 1.7E-07 50.6 6.6 112 56-169 627-743 (1018)
154 PRK15363 pathogenicity island 96.5 0.019 4.1E-07 38.6 7.0 86 49-137 43-129 (157)
155 PF12688 TPR_5: Tetratrico pep 96.5 0.066 1.4E-06 34.4 9.2 85 85-169 10-102 (120)
156 PF13414 TPR_11: TPR repeat; P 96.5 0.016 3.4E-07 33.0 5.7 58 112-169 4-65 (69)
157 PRK15363 pathogenicity island 96.4 0.082 1.8E-06 35.6 9.5 86 84-170 43-131 (157)
158 KOG3060 Uncharacterized conser 96.4 0.23 5E-06 36.1 12.8 144 21-170 23-182 (289)
159 KOG2376 Signal recognition par 96.4 0.086 1.9E-06 42.5 10.9 141 17-168 53-201 (652)
160 PRK10153 DNA-binding transcrip 96.4 0.25 5.4E-06 40.0 13.7 130 39-170 335-481 (517)
161 PF13371 TPR_9: Tetratricopept 96.3 0.021 4.6E-07 32.8 5.6 54 84-138 3-56 (73)
162 PRK10803 tol-pal system protei 96.3 0.14 3E-06 37.7 10.9 92 78-171 145-246 (263)
163 PF14938 SNAP: Soluble NSF att 96.2 0.093 2E-06 38.9 10.1 151 18-170 43-224 (282)
164 PF10602 RPN7: 26S proteasome 96.2 0.11 2.5E-06 35.7 9.7 97 42-138 37-140 (177)
165 KOG3785 Uncharacterized conser 96.1 0.092 2E-06 40.1 9.4 125 16-145 365-497 (557)
166 PRK04841 transcriptional regul 96.1 0.32 6.9E-06 41.9 13.9 153 18-170 460-640 (903)
167 PF04840 Vps16_C: Vps16, C-ter 96.1 0.18 3.9E-06 38.2 10.9 79 48-136 184-262 (319)
168 COG3629 DnrI DNA-binding trans 96.0 0.049 1.1E-06 40.2 7.6 64 112-175 154-225 (280)
169 PRK10866 outer membrane biogen 96.0 0.37 8.1E-06 35.0 13.5 151 17-170 39-240 (243)
170 KOG3616 Selective LIM binding 96.0 0.039 8.5E-07 45.9 7.5 101 53-164 744-846 (1636)
171 PF13414 TPR_11: TPR repeat; P 96.0 0.05 1.1E-06 30.8 6.2 60 43-103 5-65 (69)
172 KOG4340 Uncharacterized conser 96.0 0.14 2.9E-06 38.3 9.4 50 22-72 156-209 (459)
173 KOG1125 TPR repeat-containing 95.9 0.12 2.6E-06 41.5 9.6 140 21-164 405-564 (579)
174 KOG4340 Uncharacterized conser 95.9 0.12 2.5E-06 38.6 8.8 52 122-174 155-210 (459)
175 COG4235 Cytochrome c biogenesi 95.9 0.42 9E-06 35.5 11.7 111 40-151 155-269 (287)
176 COG5107 RNA14 Pre-mRNA 3'-end 95.8 0.43 9.2E-06 37.7 12.0 125 41-168 397-528 (660)
177 PLN02789 farnesyltranstransfer 95.7 0.62 1.3E-05 35.3 14.5 128 43-173 39-173 (320)
178 KOG0553 TPR repeat-containing 95.7 0.18 3.8E-06 37.4 9.2 81 53-136 93-174 (304)
179 KOG1174 Anaphase-promoting com 95.7 0.76 1.6E-05 36.0 13.4 49 119-167 342-393 (564)
180 PF13424 TPR_12: Tetratricopep 95.7 0.04 8.7E-07 32.1 5.0 59 78-136 7-71 (78)
181 PRK10803 tol-pal system protei 95.7 0.35 7.6E-06 35.6 10.9 98 42-139 144-245 (263)
182 KOG2053 Mitochondrial inherita 95.7 0.2 4.3E-06 42.3 10.4 128 21-152 20-154 (932)
183 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.23 4.9E-06 39.1 10.0 64 40-105 74-141 (453)
184 KOG0553 TPR repeat-containing 95.6 0.13 2.8E-06 38.1 8.2 85 85-170 90-177 (304)
185 PF00637 Clathrin: Region in C 95.5 0.018 3.9E-07 37.9 3.3 53 83-135 14-66 (143)
186 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.12 2.5E-06 40.7 7.9 96 76-173 75-176 (453)
187 PF00637 Clathrin: Region in C 95.4 0.034 7.3E-07 36.6 4.4 126 14-157 11-140 (143)
188 PF13371 TPR_9: Tetratricopept 95.3 0.077 1.7E-06 30.3 5.3 56 49-105 3-58 (73)
189 KOG2053 Mitochondrial inherita 95.2 0.32 6.9E-06 41.2 10.0 105 53-162 21-130 (932)
190 KOG1156 N-terminal acetyltrans 95.2 0.66 1.4E-05 38.1 11.5 122 16-138 377-509 (700)
191 PRK10153 DNA-binding transcrip 95.2 0.35 7.6E-06 39.2 10.2 120 24-145 356-489 (517)
192 PF14938 SNAP: Soluble NSF att 95.2 0.45 9.7E-06 35.3 10.1 134 25-170 30-183 (282)
193 PF10300 DUF3808: Protein of u 95.1 1.1 2.4E-05 35.8 12.8 153 16-170 194-375 (468)
194 KOG1125 TPR repeat-containing 95.1 0.34 7.3E-06 39.0 9.6 156 9-168 347-524 (579)
195 PRK04841 transcriptional regul 95.0 1.4 3E-05 38.1 13.9 155 16-170 537-719 (903)
196 PF13525 YfiO: Outer membrane 94.7 0.088 1.9E-06 37.0 5.2 142 19-162 14-198 (203)
197 KOG4570 Uncharacterized conser 94.7 0.31 6.8E-06 36.6 8.0 132 2-138 8-162 (418)
198 PF13170 DUF4003: Protein of u 94.7 0.53 1.2E-05 35.3 9.4 117 57-175 78-215 (297)
199 COG3118 Thioredoxin domain-con 94.6 1.3 2.9E-05 32.9 12.2 145 19-166 143-296 (304)
200 COG3898 Uncharacterized membra 94.5 1.8 4E-05 33.7 12.1 132 22-157 132-309 (531)
201 COG5107 RNA14 Pre-mRNA 3'-end 94.4 0.59 1.3E-05 37.0 9.2 120 13-137 400-528 (660)
202 PRK15331 chaperone protein Sic 94.3 0.64 1.4E-05 31.6 8.2 82 87-169 48-132 (165)
203 PF13281 DUF4071: Domain of un 94.2 2 4.3E-05 33.3 13.6 154 16-171 147-334 (374)
204 KOG0548 Molecular co-chaperone 94.2 1.1 2.3E-05 36.0 10.3 54 83-137 365-418 (539)
205 KOG0547 Translocase of outer m 94.2 1.3 2.8E-05 35.5 10.7 144 23-170 339-490 (606)
206 PF13929 mRNA_stabil: mRNA sta 94.2 1.6 3.4E-05 32.5 10.6 110 57-166 144-262 (292)
207 PF04053 Coatomer_WDAD: Coatom 94.0 1.3 2.8E-05 35.2 10.7 130 20-167 271-427 (443)
208 KOG1127 TPR repeat-containing 93.9 0.65 1.4E-05 40.1 9.1 151 16-168 498-656 (1238)
209 KOG4162 Predicted calmodulin-b 93.9 2.4 5.1E-05 35.7 12.0 122 44-169 653-781 (799)
210 smart00299 CLH Clathrin heavy 93.8 1.2 2.5E-05 29.1 12.3 123 14-154 11-137 (140)
211 PF13525 YfiO: Outer membrane 93.8 1.6 3.4E-05 30.7 10.6 123 49-171 13-170 (203)
212 COG3629 DnrI DNA-binding trans 93.6 1.1 2.4E-05 33.2 9.0 78 42-120 154-236 (280)
213 PF13762 MNE1: Mitochondrial s 93.6 1.2 2.5E-05 29.7 8.2 87 43-130 41-133 (145)
214 PF13176 TPR_7: Tetratricopept 93.6 0.24 5.1E-06 24.3 3.9 25 144-168 1-25 (36)
215 smart00299 CLH Clathrin heavy 93.5 1.3 2.9E-05 28.8 9.8 115 40-167 6-121 (140)
216 KOG4162 Predicted calmodulin-b 93.5 1.3 2.8E-05 37.1 9.9 120 16-138 656-781 (799)
217 PF10300 DUF3808: Protein of u 93.4 3.4 7.4E-05 33.1 12.8 126 44-171 191-334 (468)
218 PF13929 mRNA_stabil: mRNA sta 93.4 2.5 5.4E-05 31.5 10.5 115 22-136 140-263 (292)
219 PF13176 TPR_7: Tetratricopept 93.1 0.2 4.4E-06 24.5 3.3 24 113-136 1-24 (36)
220 KOG2796 Uncharacterized conser 93.1 1.8 3.9E-05 32.0 9.1 124 16-140 183-315 (366)
221 KOG1156 N-terminal acetyltrans 93.0 4.5 9.8E-05 33.5 12.2 122 44-168 374-508 (700)
222 KOG0543 FKBP-type peptidyl-pro 93.0 1.9 4.2E-05 33.4 9.6 121 49-170 216-354 (397)
223 KOG0985 Vesicle coat protein c 92.8 2.8 6.1E-05 36.8 11.1 135 13-160 1107-1267(1666)
224 KOG0548 Molecular co-chaperone 92.8 0.68 1.5E-05 37.1 7.2 100 19-121 11-114 (539)
225 KOG3941 Intermediate in Toll s 92.6 0.95 2.1E-05 33.7 7.3 88 71-158 62-174 (406)
226 PF13428 TPR_14: Tetratricopep 92.6 0.39 8.4E-06 24.6 4.1 26 113-138 3-28 (44)
227 cd08819 CARD_MDA5_2 Caspase ac 92.3 1.5 3.3E-05 26.4 6.9 67 95-163 21-87 (88)
228 PF13762 MNE1: Mitochondrial s 92.2 1.9 4.1E-05 28.7 7.8 91 5-95 28-134 (145)
229 PF11663 Toxin_YhaV: Toxin wit 92.1 0.26 5.7E-06 32.2 3.6 32 53-86 107-138 (140)
230 COG1729 Uncharacterized protei 91.9 3.9 8.4E-05 30.1 10.8 97 43-140 144-244 (262)
231 COG1729 Uncharacterized protei 91.6 1.8 3.9E-05 31.8 7.8 88 18-105 149-244 (262)
232 PRK15331 chaperone protein Sic 91.5 0.88 1.9E-05 30.9 5.7 84 20-104 47-133 (165)
233 PRK10866 outer membrane biogen 91.5 4.2 9E-05 29.6 13.2 127 44-171 36-204 (243)
234 KOG4555 TPR repeat-containing 91.4 2.9 6.2E-05 27.6 8.9 88 49-138 51-142 (175)
235 TIGR02508 type_III_yscG type I 91.3 2.4 5.1E-05 26.4 7.8 79 91-172 20-98 (115)
236 PF11207 DUF2989: Protein of u 91.2 3.9 8.5E-05 28.8 8.8 72 58-130 123-197 (203)
237 KOG0624 dsRNA-activated protei 91.1 5.8 0.00013 30.6 12.2 49 19-67 47-98 (504)
238 PF07163 Pex26: Pex26 protein; 91.0 3.3 7.1E-05 30.8 8.6 91 44-136 86-183 (309)
239 PF13428 TPR_14: Tetratricopep 91.0 0.66 1.4E-05 23.7 3.9 28 144-171 3-30 (44)
240 KOG3617 WD40 and TPR repeat-co 91.0 5.1 0.00011 34.5 10.5 137 18-167 736-883 (1416)
241 COG4700 Uncharacterized protei 90.9 4.2 9E-05 28.6 10.7 97 40-138 88-187 (251)
242 COG4700 Uncharacterized protei 90.9 4.2 9.1E-05 28.6 12.3 117 16-136 95-218 (251)
243 KOG2114 Vacuolar assembly/sort 90.9 5.8 0.00013 33.9 10.8 116 16-138 340-458 (933)
244 PF13512 TPR_18: Tetratricopep 90.8 3.4 7.3E-05 27.4 10.2 79 44-123 14-94 (142)
245 PF13512 TPR_18: Tetratricopep 90.8 2.7 5.9E-05 27.8 7.4 68 21-88 21-94 (142)
246 PF04184 ST7: ST7 protein; In 90.7 3.6 7.9E-05 33.1 9.1 111 16-126 206-346 (539)
247 COG4105 ComL DNA uptake lipopr 90.6 5.2 0.00011 29.2 10.8 149 20-168 44-230 (254)
248 PF07079 DUF1347: Protein of u 90.6 2.9 6.4E-05 33.2 8.4 128 22-153 18-178 (549)
249 PF10602 RPN7: 26S proteasome 90.4 2.9 6.3E-05 28.8 7.7 100 69-168 28-139 (177)
250 KOG2280 Vacuolar assembly/sort 90.2 5.3 0.00012 33.7 9.9 105 16-135 690-794 (829)
251 PF13374 TPR_10: Tetratricopep 90.1 0.92 2E-05 22.4 3.9 26 144-169 4-29 (42)
252 PF13374 TPR_10: Tetratricopep 90.1 0.6 1.3E-05 23.1 3.2 27 42-68 3-29 (42)
253 COG3118 Thioredoxin domain-con 89.8 6.9 0.00015 29.3 12.8 143 28-171 121-265 (304)
254 PF07035 Mic1: Colon cancer-as 89.7 4.9 0.00011 27.5 15.0 125 38-172 26-150 (167)
255 PF04184 ST7: ST7 protein; In 89.5 9.5 0.00021 30.8 10.5 76 82-157 265-346 (539)
256 PF02284 COX5A: Cytochrome c o 89.3 2.3 5.1E-05 26.5 5.7 43 96-138 30-72 (108)
257 KOG4570 Uncharacterized conser 89.3 2.2 4.7E-05 32.3 6.6 88 16-105 70-164 (418)
258 COG4235 Cytochrome c biogenesi 89.3 7.5 0.00016 29.0 10.6 96 75-171 155-256 (287)
259 KOG1127 TPR repeat-containing 89.2 2.9 6.4E-05 36.4 8.0 124 42-169 493-623 (1238)
260 COG4649 Uncharacterized protei 88.6 6.3 0.00014 27.4 9.4 118 53-170 70-195 (221)
261 PF07035 Mic1: Colon cancer-as 88.5 6.1 0.00013 27.0 11.2 99 64-168 17-115 (167)
262 PF09205 DUF1955: Domain of un 88.4 5 0.00011 26.5 7.0 63 111-173 86-151 (161)
263 KOG2114 Vacuolar assembly/sort 88.4 6.7 0.00015 33.6 9.4 80 20-102 378-457 (933)
264 KOG1538 Uncharacterized conser 88.4 14 0.00031 31.1 11.9 57 115-171 777-846 (1081)
265 PF10366 Vps39_1: Vacuolar sor 87.6 2.6 5.7E-05 26.5 5.4 56 13-69 2-67 (108)
266 KOG0543 FKBP-type peptidyl-pro 87.5 7.5 0.00016 30.3 8.7 117 19-138 217-353 (397)
267 PF09613 HrpB1_HrpK: Bacterial 87.5 7 0.00015 26.5 8.8 110 16-130 16-128 (160)
268 PF00515 TPR_1: Tetratricopept 87.3 2 4.4E-05 20.2 3.9 27 144-170 3-29 (34)
269 PF07079 DUF1347: Protein of u 87.3 9.9 0.00022 30.4 9.2 117 52-171 17-157 (549)
270 PF13170 DUF4003: Protein of u 87.3 4.6 9.9E-05 30.4 7.4 91 25-117 118-223 (297)
271 KOG2610 Uncharacterized conser 86.9 12 0.00027 28.8 11.1 144 23-167 116-272 (491)
272 PF09477 Type_III_YscG: Bacter 86.6 6.1 0.00013 24.9 8.6 77 91-170 21-97 (116)
273 PF04053 Coatomer_WDAD: Coatom 86.1 12 0.00026 29.9 9.5 18 16-33 301-318 (443)
274 TIGR03504 FimV_Cterm FimV C-te 86.1 1.8 4E-05 22.4 3.4 21 150-170 7-27 (44)
275 PF10366 Vps39_1: Vacuolar sor 85.8 3.3 7.1E-05 26.1 5.1 25 114-138 42-66 (108)
276 PF14689 SPOB_a: Sensor_kinase 85.8 1.7 3.7E-05 24.3 3.5 43 128-170 7-51 (62)
277 cd08819 CARD_MDA5_2 Caspase ac 85.4 1.8 3.8E-05 26.1 3.5 37 22-59 48-84 (88)
278 TIGR02561 HrpB1_HrpK type III 85.4 4.1 9E-05 27.3 5.6 69 87-159 21-95 (153)
279 cd00923 Cyt_c_Oxidase_Va Cytoc 85.4 6.7 0.00014 24.3 6.4 45 94-138 25-69 (103)
280 PF11848 DUF3368: Domain of un 85.2 4 8.6E-05 21.5 4.6 31 53-83 14-44 (48)
281 KOG0624 dsRNA-activated protei 85.0 16 0.00035 28.3 12.6 120 50-170 115-251 (504)
282 PF11207 DUF2989: Protein of u 84.8 8 0.00017 27.3 7.1 75 86-162 117-198 (203)
283 PF09205 DUF1955: Domain of un 84.4 7.9 0.00017 25.6 6.4 60 76-136 86-145 (161)
284 PF07721 TPR_4: Tetratricopept 84.3 2.7 5.8E-05 18.7 3.3 20 116-135 6-25 (26)
285 KOG2041 WD40 repeat protein [G 84.2 16 0.00035 31.1 9.4 31 110-140 851-881 (1189)
286 PF07719 TPR_2: Tetratricopept 84.1 3.1 6.7E-05 19.3 3.9 27 144-170 3-29 (34)
287 KOG0276 Vesicle coat complex C 83.9 5.6 0.00012 32.9 6.7 125 22-167 598-746 (794)
288 PRK10564 maltose regulon perip 83.6 2.1 4.6E-05 32.0 4.1 30 145-174 260-289 (303)
289 COG4649 Uncharacterized protei 83.6 12 0.00027 26.0 13.0 120 20-139 68-195 (221)
290 PF11848 DUF3368: Domain of un 83.4 4.8 0.0001 21.2 4.4 35 86-120 12-46 (48)
291 KOG0403 Neoplastic transformat 83.3 5 0.00011 32.0 6.0 86 16-105 515-611 (645)
292 PF13174 TPR_6: Tetratricopept 83.2 1.6 3.5E-05 20.2 2.4 24 148-171 6-29 (33)
293 TIGR03504 FimV_Cterm FimV C-te 83.1 2.3 5E-05 22.0 3.0 24 47-70 5-28 (44)
294 PF10579 Rapsyn_N: Rapsyn N-te 82.9 4.9 0.00011 23.8 4.6 46 88-133 18-65 (80)
295 PF08631 SPO22: Meiosis protei 82.6 17 0.00038 26.9 14.5 149 21-171 4-186 (278)
296 COG5108 RPO41 Mitochondrial DN 82.5 6.4 0.00014 33.1 6.6 89 15-103 33-130 (1117)
297 PF13431 TPR_17: Tetratricopep 82.3 1.7 3.7E-05 20.9 2.2 23 109-131 11-33 (34)
298 cd08326 CARD_CASP9 Caspase act 82.2 2.9 6.4E-05 25.0 3.6 33 23-55 43-75 (84)
299 KOG3617 WD40 and TPR repeat-co 82.1 34 0.00074 29.9 11.9 114 12-137 759-884 (1416)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 81.4 10 0.00022 23.5 7.8 60 59-119 25-84 (103)
301 COG0735 Fur Fe2+/Zn2+ uptake r 81.3 13 0.00029 24.7 7.3 35 43-77 22-56 (145)
302 PF11768 DUF3312: Protein of u 81.3 11 0.00024 30.8 7.4 103 40-143 407-526 (545)
303 PF13181 TPR_8: Tetratricopept 81.0 4.3 9.4E-05 18.9 4.0 27 144-170 3-29 (34)
304 cd08332 CARD_CASP2 Caspase act 81.0 3 6.5E-05 25.3 3.4 32 22-53 46-77 (90)
305 PRK11639 zinc uptake transcrip 80.7 14 0.00031 25.2 7.1 54 39-92 23-76 (169)
306 PF11846 DUF3366: Domain of un 80.7 11 0.00024 26.1 6.7 52 87-138 119-171 (193)
307 KOG2300 Uncharacterized conser 80.4 30 0.00065 28.2 13.6 122 48-169 330-472 (629)
308 KOG0550 Molecular chaperone (D 80.3 28 0.0006 27.7 10.6 149 20-170 179-349 (486)
309 PRK10564 maltose regulon perip 80.0 3.6 7.8E-05 30.9 4.1 44 40-83 255-299 (303)
310 PF02284 COX5A: Cytochrome c o 80.0 12 0.00026 23.4 8.1 75 44-119 11-87 (108)
311 TIGR02508 type_III_yscG type I 79.8 6 0.00013 24.7 4.4 84 24-114 19-105 (115)
312 COG5108 RPO41 Mitochondrial DN 78.1 13 0.00028 31.4 7.0 78 46-123 33-115 (1117)
313 KOG1464 COP9 signalosome, subu 77.8 26 0.00057 26.3 7.9 146 22-167 39-216 (440)
314 PF07575 Nucleopor_Nup85: Nup8 77.8 5.3 0.00011 32.9 5.0 86 16-104 381-466 (566)
315 KOG2280 Vacuolar assembly/sort 77.7 21 0.00045 30.4 8.1 88 71-164 679-766 (829)
316 PF11846 DUF3366: Domain of un 77.3 16 0.00035 25.3 6.7 53 118-170 115-172 (193)
317 cd07229 Pat_TGL3_like Triacylg 76.8 18 0.00038 28.5 7.2 98 62-159 100-254 (391)
318 PF02259 FAT: FAT domain; Int 76.8 30 0.00064 26.1 9.9 61 111-171 146-213 (352)
319 PF12796 Ank_2: Ankyrin repeat 76.7 13 0.00027 21.8 5.4 80 20-110 4-86 (89)
320 TIGR02561 HrpB1_HrpK type III 76.2 9.8 0.00021 25.5 5.0 54 16-71 16-74 (153)
321 KOG2610 Uncharacterized conser 76.0 35 0.00075 26.5 10.4 114 53-167 115-234 (491)
322 PRK13342 recombination factor 75.4 28 0.00062 27.4 8.3 31 145-175 230-263 (413)
323 KOG1258 mRNA processing protei 75.1 46 0.001 27.5 10.6 97 53-150 91-190 (577)
324 KOG4567 GTPase-activating prot 75.0 27 0.00059 26.6 7.4 71 95-166 262-342 (370)
325 cd07153 Fur_like Ferric uptake 74.7 14 0.0003 23.1 5.4 47 46-92 5-51 (116)
326 KOG4555 TPR repeat-containing 74.5 22 0.00048 23.6 7.5 87 85-172 52-145 (175)
327 PF13934 ELYS: Nuclear pore co 73.9 30 0.00066 24.9 10.6 105 43-155 78-185 (226)
328 KOG2908 26S proteasome regulat 73.4 12 0.00026 28.7 5.4 78 16-93 81-174 (380)
329 smart00028 TPR Tetratricopepti 73.1 6.6 0.00014 16.9 3.3 27 144-170 3-29 (34)
330 COG3947 Response regulator con 72.5 18 0.0004 27.3 6.0 56 113-168 281-339 (361)
331 PRK15180 Vi polysaccharide bio 72.1 15 0.00033 29.7 5.9 87 50-138 332-418 (831)
332 KOG0550 Molecular chaperone (D 71.6 25 0.00054 27.9 6.8 116 21-138 214-348 (486)
333 KOG2214 Predicted esterase of 71.2 33 0.00071 27.9 7.5 94 67-160 196-334 (543)
334 KOG2396 HAT (Half-A-TPR) repea 70.5 58 0.0013 26.6 9.4 94 72-166 455-554 (568)
335 KOG4648 Uncharacterized conser 69.5 14 0.0003 28.6 5.0 76 86-167 107-183 (536)
336 PF13934 ELYS: Nuclear pore co 69.2 31 0.00067 24.8 6.6 94 23-125 91-186 (226)
337 KOG4234 TPR repeat-containing 69.2 40 0.00086 24.2 8.1 94 49-143 103-200 (271)
338 PF01475 FUR: Ferric uptake re 69.1 15 0.00033 23.2 4.6 46 45-90 11-56 (120)
339 PHA02875 ankyrin repeat protei 69.1 53 0.0011 25.6 9.3 21 16-36 38-58 (413)
340 COG0457 NrfG FOG: TPR repeat [ 68.8 31 0.00068 22.9 14.5 89 50-138 139-229 (291)
341 COG3898 Uncharacterized membra 68.7 58 0.0013 25.9 11.6 124 43-170 84-216 (531)
342 smart00638 LPD_N Lipoprotein N 68.5 67 0.0014 26.5 11.2 18 42-59 341-358 (574)
343 PF07163 Pex26: Pex26 protein; 68.1 49 0.0011 24.9 8.0 83 83-165 90-181 (309)
344 KOG4334 Uncharacterized conser 68.0 6.3 0.00014 31.6 3.0 94 25-124 462-573 (650)
345 PF08631 SPO22: Meiosis protei 67.9 47 0.001 24.6 14.2 149 16-167 90-271 (278)
346 PF02847 MA3: MA3 domain; Int 67.5 16 0.00034 22.7 4.4 21 82-102 8-28 (113)
347 PF12926 MOZART2: Mitotic-spin 67.5 25 0.00054 21.2 7.0 41 97-137 29-69 (88)
348 cd08329 CARD_BIRC2_BIRC3 Caspa 67.5 12 0.00026 22.9 3.6 53 30-86 26-78 (94)
349 COG5159 RPN6 26S proteasome re 67.1 53 0.0012 24.9 10.0 121 49-169 11-152 (421)
350 PF12554 MOZART1: Mitotic-spin 66.9 11 0.00024 20.0 2.9 27 149-175 11-37 (48)
351 KOG1538 Uncharacterized conser 66.8 53 0.0012 27.9 8.0 109 19-138 712-844 (1081)
352 PF02184 HAT: HAT (Half-A-TPR) 66.5 8.5 0.00018 18.5 2.2 25 91-117 2-26 (32)
353 COG2178 Predicted RNA-binding 66.2 19 0.0004 25.4 4.7 98 40-138 28-148 (204)
354 cd07153 Fur_like Ferric uptake 66.1 28 0.00061 21.7 5.4 49 81-129 5-53 (116)
355 COG4455 ImpE Protein of avirul 65.9 39 0.00085 24.5 6.3 119 43-168 3-130 (273)
356 cd08789 CARD_IPS-1_RIG-I Caspa 65.5 13 0.00027 22.3 3.4 39 20-59 42-80 (84)
357 KOG1920 IkappaB kinase complex 65.5 1.1E+02 0.0024 27.9 10.6 51 118-168 972-1025(1265)
358 PRK09687 putative lyase; Provi 65.4 55 0.0012 24.4 13.0 31 138-169 202-232 (280)
359 PF09613 HrpB1_HrpK: Bacterial 64.7 42 0.00091 22.8 10.3 48 53-104 22-72 (160)
360 PF02607 B12-binding_2: B12 bi 64.4 13 0.00027 21.5 3.3 38 53-90 13-50 (79)
361 PF13281 DUF4071: Domain of un 64.1 69 0.0015 25.1 9.0 92 46-137 146-252 (374)
362 smart00386 HAT HAT (Half-A-TPR 64.0 13 0.00028 16.7 3.8 28 91-119 2-29 (33)
363 PRK15180 Vi polysaccharide bio 64.0 64 0.0014 26.4 7.8 121 44-169 292-418 (831)
364 KOG0991 Replication factor C, 63.8 21 0.00045 26.3 4.7 49 37-87 235-283 (333)
365 PRK11906 transcriptional regul 63.7 77 0.0017 25.6 12.7 137 25-165 273-430 (458)
366 PF11817 Foie-gras_1: Foie gra 63.6 22 0.00048 25.9 5.1 57 113-169 180-245 (247)
367 KOG4648 Uncharacterized conser 63.5 13 0.00029 28.7 3.9 48 49-98 105-153 (536)
368 PF10579 Rapsyn_N: Rapsyn N-te 63.0 16 0.00035 21.6 3.4 46 53-98 18-65 (80)
369 KOG4077 Cytochrome c oxidase, 62.2 29 0.00063 22.8 4.7 45 95-139 68-112 (149)
370 PRK13341 recombination factor 61.9 77 0.0017 27.3 8.5 30 145-175 262-291 (725)
371 KOG2041 WD40 repeat protein [G 61.9 51 0.0011 28.3 7.1 69 39-107 690-765 (1189)
372 cd08323 CARD_APAF1 Caspase act 60.9 19 0.00042 21.6 3.6 57 30-90 17-73 (86)
373 PF05476 PET122: PET122; Inte 60.1 67 0.0015 23.7 7.5 118 17-134 17-151 (267)
374 KOG2063 Vacuolar assembly/sort 60.1 92 0.002 27.5 8.6 113 43-155 506-639 (877)
375 PF10155 DUF2363: Uncharacteri 60.1 45 0.00097 21.7 12.0 112 24-137 3-124 (126)
376 PF02847 MA3: MA3 domain; Int 59.7 20 0.00042 22.3 3.8 23 45-67 6-28 (113)
377 PRK11639 zinc uptake transcrip 59.7 53 0.0012 22.4 7.3 62 67-129 17-78 (169)
378 COG0457 NrfG FOG: TPR repeat [ 59.3 49 0.0011 21.9 14.0 152 16-170 65-230 (291)
379 PRK11906 transcriptional regul 59.0 95 0.0021 25.1 9.4 109 23-136 317-432 (458)
380 PF12069 DUF3549: Protein of u 58.0 86 0.0019 24.2 11.7 132 16-150 172-306 (340)
381 cd08812 CARD_RIG-I_like Caspas 57.9 17 0.00037 21.9 3.1 34 24-57 48-82 (88)
382 cd08330 CARD_ASC_NALP1 Caspase 57.6 23 0.00049 21.0 3.5 27 25-51 44-70 (82)
383 PF02259 FAT: FAT domain; Int 57.5 80 0.0017 23.7 10.5 143 18-171 6-175 (352)
384 PRK14700 recombination factor 57.4 83 0.0018 23.9 8.8 61 47-107 129-197 (300)
385 PRK14958 DNA polymerase III su 57.3 1.1E+02 0.0023 25.2 8.8 71 102-175 191-278 (509)
386 KOG2908 26S proteasome regulat 56.7 92 0.002 24.2 8.7 87 44-130 78-176 (380)
387 COG0735 Fur Fe2+/Zn2+ uptake r 56.3 57 0.0012 21.6 7.8 66 62-128 7-72 (145)
388 KOG1585 Protein required for f 56.2 81 0.0018 23.4 11.4 121 43-164 93-249 (308)
389 cd08326 CARD_CASP9 Caspase act 55.5 43 0.00093 20.0 6.9 62 96-161 19-80 (84)
390 KOG0403 Neoplastic transformat 55.1 78 0.0017 25.7 6.9 59 114-172 512-573 (645)
391 COG1747 Uncharacterized N-term 55.0 1.2E+02 0.0027 25.1 12.7 149 16-169 72-232 (711)
392 cd08332 CARD_CASP2 Caspase act 54.8 45 0.00099 20.1 7.0 62 96-161 23-84 (90)
393 cd08327 CARD_RAIDD Caspase act 54.8 47 0.001 20.3 4.8 31 21-51 46-76 (94)
394 KOG0687 26S proteasome regulat 54.6 99 0.0021 23.9 9.0 17 24-40 36-52 (393)
395 PF09454 Vps23_core: Vps23 cor 54.6 32 0.0007 19.4 3.7 35 38-72 5-39 (65)
396 PF10475 DUF2450: Protein of u 54.6 41 0.00089 25.2 5.3 109 16-131 104-217 (291)
397 PF12926 MOZART2: Mitotic-spin 54.0 47 0.001 20.0 5.0 62 41-104 10-71 (88)
398 PLN03025 replication factor C 53.9 94 0.002 23.5 10.1 69 104-175 173-257 (319)
399 PRK08691 DNA polymerase III su 53.7 1.5E+02 0.0032 25.6 9.0 68 104-174 193-277 (709)
400 COG4105 ComL DNA uptake lipopr 53.7 88 0.0019 23.1 10.3 129 41-171 35-196 (254)
401 PF01475 FUR: Ferric uptake re 53.5 39 0.00085 21.3 4.5 50 80-129 11-60 (120)
402 KOG0991 Replication factor C, 53.3 91 0.002 23.1 9.6 44 131-175 228-271 (333)
403 PF04762 IKI3: IKI3 family; I 52.1 1.8E+02 0.0038 26.1 11.2 52 19-70 787-843 (928)
404 cd01671 CARD Caspase activatio 51.8 33 0.00071 19.7 3.6 29 56-88 42-70 (80)
405 KOG0686 COP9 signalosome, subu 51.4 1.2E+02 0.0027 24.1 8.1 92 43-136 152-254 (466)
406 PF11768 DUF3312: Protein of u 51.2 1.1E+02 0.0023 25.4 7.2 89 16-105 414-507 (545)
407 TIGR03581 EF_0839 conserved hy 51.1 34 0.00074 24.6 4.0 83 56-138 136-235 (236)
408 PF11838 ERAP1_C: ERAP1-like C 50.3 1E+02 0.0023 22.9 10.6 135 16-154 135-287 (324)
409 PRK14956 DNA polymerase III su 50.0 1.4E+02 0.0031 24.4 8.3 70 104-175 195-281 (484)
410 smart00777 Mad3_BUB1_I Mad3/BU 50.0 69 0.0015 20.8 7.0 42 94-135 81-123 (125)
411 PF11491 DUF3213: Protein of u 49.6 4.4 9.5E-05 24.0 -0.4 23 104-126 17-39 (88)
412 PF13646 HEAT_2: HEAT repeats; 49.1 51 0.0011 19.0 5.1 51 74-128 12-62 (88)
413 PHA02875 ankyrin repeat protei 48.7 1E+02 0.0022 24.1 6.9 76 19-98 8-87 (413)
414 KOG2063 Vacuolar assembly/sort 48.6 1.5E+02 0.0032 26.3 8.0 108 16-123 510-638 (877)
415 PF06552 TOM20_plant: Plant sp 47.7 77 0.0017 22.1 5.2 80 42-123 29-125 (186)
416 smart00114 CARD Caspase recrui 46.6 42 0.00092 19.9 3.6 52 31-86 24-75 (88)
417 PF11663 Toxin_YhaV: Toxin wit 46.3 20 0.00044 23.6 2.2 33 86-120 105-137 (140)
418 PRK09462 fur ferric uptake reg 46.2 85 0.0018 20.7 7.0 36 91-126 32-67 (148)
419 PHA03100 ankyrin repeat protei 46.1 1.5E+02 0.0033 23.6 10.8 40 98-137 158-199 (480)
420 COG3947 Response regulator con 45.9 1.3E+02 0.0029 22.9 13.4 59 79-138 282-340 (361)
421 KOG1464 COP9 signalosome, subu 44.4 1.4E+02 0.003 22.6 8.2 117 54-170 40-173 (440)
422 smart00544 MA3 Domain in DAP-5 44.3 76 0.0016 19.6 7.7 22 46-67 7-28 (113)
423 PRK14951 DNA polymerase III su 44.2 2E+02 0.0043 24.4 8.8 69 104-175 198-283 (618)
424 cd08810 CARD_BCL10 Caspase act 43.5 57 0.0012 19.5 3.7 36 32-67 21-56 (84)
425 PF00619 CARD: Caspase recruit 42.6 25 0.00055 20.5 2.2 41 30-70 19-59 (85)
426 PF01347 Vitellogenin_N: Lipop 42.5 1.1E+02 0.0024 25.5 6.5 53 20-72 355-409 (618)
427 PRK09462 fur ferric uptake reg 42.4 99 0.0021 20.4 7.9 55 39-93 14-69 (148)
428 PRK14962 DNA polymerase III su 42.3 1.8E+02 0.004 23.6 7.5 57 53-109 255-317 (472)
429 COG1466 HolA DNA polymerase II 41.9 1.6E+02 0.0034 22.5 10.0 23 153-175 219-241 (334)
430 cd04400 RhoGAP_fBEM3 RhoGAP_fB 41.8 44 0.00095 23.2 3.5 102 20-126 45-149 (190)
431 TIGR01503 MthylAspMut_E methyl 41.5 37 0.00079 27.3 3.3 45 91-138 69-113 (480)
432 PF10255 Paf67: RNA polymerase 41.0 1.1E+02 0.0024 24.3 5.9 58 112-169 123-191 (404)
433 COG2405 Predicted nucleic acid 40.8 79 0.0017 21.1 4.2 42 78-120 112-153 (157)
434 PF14649 Spatacsin_C: Spatacsi 40.8 1.6E+02 0.0035 22.3 7.1 91 61-153 5-99 (296)
435 PF11817 Foie-gras_1: Foie gra 40.2 1.4E+02 0.003 21.7 6.1 56 81-136 183-243 (247)
436 COG5210 GTPase-activating prot 40.0 2.1E+02 0.0045 23.4 8.3 46 93-138 359-404 (496)
437 PF14853 Fis1_TPR_C: Fis1 C-te 39.2 53 0.0011 17.7 2.8 19 151-169 10-28 (53)
438 KOG1585 Protein required for f 39.2 1.6E+02 0.0035 21.9 9.2 151 16-167 37-215 (308)
439 PF11123 DNA_Packaging_2: DNA 39.1 81 0.0018 18.5 4.1 15 156-170 59-73 (82)
440 TIGR01914 cas_Csa4 CRISPR-asso 38.8 1.4E+02 0.003 23.1 5.8 66 52-122 287-352 (354)
441 TIGR03236 dnd_assoc_1 dnd syst 38.7 1.2E+02 0.0025 23.7 5.5 44 86-129 306-349 (363)
442 cd08325 CARD_CASP1-like Caspas 38.4 39 0.00084 20.1 2.5 15 56-70 46-60 (83)
443 PF14669 Asp_Glu_race_2: Putat 38.2 91 0.002 22.2 4.5 127 41-167 51-206 (233)
444 PRK06645 DNA polymerase III su 38.0 2.3E+02 0.005 23.4 10.5 32 143-175 259-290 (507)
445 COG4455 ImpE Protein of avirul 38.0 1.6E+02 0.0035 21.6 8.2 70 16-85 7-81 (273)
446 PF06552 TOM20_plant: Plant sp 38.0 1.4E+02 0.0031 20.9 7.8 90 78-173 30-138 (186)
447 cd08789 CARD_IPS-1_RIG-I Caspa 37.5 91 0.002 18.6 5.3 45 117-162 38-82 (84)
448 PF04090 RNA_pol_I_TF: RNA pol 37.2 1.5E+02 0.0033 21.0 8.3 61 41-102 41-102 (199)
449 smart00843 Ftsk_gamma This dom 37.1 78 0.0017 17.8 3.4 42 127-173 7-48 (63)
450 PRK14963 DNA polymerase III su 37.1 2.4E+02 0.0051 23.2 10.1 69 104-175 190-274 (504)
451 KOG3636 Uncharacterized conser 37.0 2.3E+02 0.005 23.1 8.0 156 14-170 59-253 (669)
452 PRK07914 hypothetical protein; 37.0 1.8E+02 0.004 21.9 9.0 27 148-175 202-228 (320)
453 PF09397 Ftsk_gamma: Ftsk gamm 36.9 81 0.0018 17.8 3.7 43 126-173 7-49 (65)
454 PHA02798 ankyrin-like protein; 36.9 2.2E+02 0.0049 22.9 9.3 114 22-136 47-170 (489)
455 TIGR01914 cas_Csa4 CRISPR-asso 36.8 1.2E+02 0.0026 23.5 5.2 59 115-174 278-338 (354)
456 KOG1130 Predicted G-alpha GTPa 36.5 27 0.00059 27.9 1.9 50 50-99 26-78 (639)
457 PF08311 Mad3_BUB1_I: Mad3/BUB 35.9 1.2E+02 0.0026 19.5 9.3 43 94-136 81-124 (126)
458 PF10255 Paf67: RNA polymerase 35.7 51 0.0011 26.1 3.3 53 16-68 128-191 (404)
459 KOG4567 GTPase-activating prot 35.7 2.1E+02 0.0045 22.1 7.5 72 61-137 263-344 (370)
460 smart00031 DED Death effector 35.1 95 0.0021 18.1 3.8 38 57-95 37-74 (79)
461 PF11838 ERAP1_C: ERAP1-like C 34.8 1.9E+02 0.0042 21.5 13.4 120 44-166 132-261 (324)
462 KOG1114 Tripeptidyl peptidase 34.8 2.8E+02 0.0062 25.1 7.6 12 44-55 1177-1188(1304)
463 PF14669 Asp_Glu_race_2: Putat 34.7 1.7E+02 0.0037 20.9 8.1 59 79-137 135-207 (233)
464 PRK13341 recombination factor 34.6 3.1E+02 0.0067 23.8 8.7 61 47-107 261-329 (725)
465 KOG3807 Predicted membrane pro 34.5 1.3E+02 0.0027 23.6 5.1 17 88-104 287-303 (556)
466 COG1747 Uncharacterized N-term 33.8 2.8E+02 0.0061 23.2 11.2 123 40-169 65-196 (711)
467 COG1413 FOG: HEAT repeat [Ener 33.4 2.1E+02 0.0046 21.5 12.6 19 39-57 118-136 (335)
468 smart00164 TBC Domain in Tre-2 33.2 1.4E+02 0.0031 20.4 5.1 31 105-135 161-191 (199)
469 PF12816 Vps8: Golgi CORVET co 33.0 86 0.0019 22.0 3.9 53 77-134 23-75 (196)
470 KOG4077 Cytochrome c oxidase, 33.0 1.5E+02 0.0032 19.6 6.4 57 61-118 69-125 (149)
471 smart00638 LPD_N Lipoprotein N 32.5 2.9E+02 0.0063 22.9 13.6 113 39-157 308-433 (574)
472 KOG1130 Predicted G-alpha GTPa 32.4 64 0.0014 25.9 3.3 51 85-135 26-79 (639)
473 PF07443 HARP: HepA-related pr 32.3 18 0.00038 19.8 0.3 32 55-86 6-37 (55)
474 PF04124 Dor1: Dor1-like famil 32.2 1.6E+02 0.0034 22.7 5.5 26 44-69 109-134 (338)
475 PF04097 Nic96: Nup93/Nic96; 32.2 2.5E+02 0.0054 23.7 6.9 48 40-89 111-158 (613)
476 COG4003 Uncharacterized protei 32.0 75 0.0016 19.0 2.8 36 37-72 26-62 (98)
477 TIGR01529 argR_whole arginine 31.7 1.4E+02 0.003 19.9 4.6 40 46-85 5-44 (146)
478 cd08323 CARD_APAF1 Caspase act 31.6 1.2E+02 0.0026 18.2 7.1 63 95-161 16-78 (86)
479 PHA03100 ankyrin repeat protei 31.4 2.7E+02 0.0058 22.2 11.1 108 22-136 117-239 (480)
480 PRK14962 DNA polymerase III su 30.5 3E+02 0.0065 22.4 9.9 30 145-175 247-276 (472)
481 COG2405 Predicted nucleic acid 30.5 1.5E+02 0.0032 19.9 4.3 43 43-86 112-154 (157)
482 smart00804 TAP_C C-terminal do 30.4 57 0.0012 18.3 2.2 22 55-76 39-61 (63)
483 PRK07452 DNA polymerase III su 30.2 2.4E+02 0.0052 21.2 9.9 31 143-175 202-232 (326)
484 KOG0376 Serine-threonine phosp 29.9 56 0.0012 26.4 2.7 17 51-67 14-30 (476)
485 PRK13342 recombination factor 29.8 2.8E+02 0.0061 21.9 9.8 46 45-90 231-279 (413)
486 PRK14971 DNA polymerase III su 29.8 3.5E+02 0.0075 22.9 8.9 69 104-175 195-280 (614)
487 KOG1586 Protein required for f 29.5 2.4E+02 0.0051 20.9 8.1 55 12-67 17-80 (288)
488 smart00668 CTLH C-terminal to 29.3 82 0.0018 16.5 2.7 21 149-169 8-28 (58)
489 PHA02884 ankyrin repeat protei 29.3 2.3E+02 0.005 21.5 5.8 111 10-130 30-153 (300)
490 PF15297 CKAP2_C: Cytoskeleton 29.2 2.6E+02 0.0057 21.8 6.0 66 55-122 116-186 (353)
491 cd04384 RhoGAP_CdGAP RhoGAP_Cd 29.0 1.5E+02 0.0033 20.7 4.6 103 19-126 38-142 (195)
492 PF05944 Phage_term_smal: Phag 29.0 1.7E+02 0.0037 19.2 4.5 30 78-107 50-79 (132)
493 PF10475 DUF2450: Protein of u 28.8 2.5E+02 0.0054 21.0 7.9 80 79-163 130-218 (291)
494 PF04034 DUF367: Domain of unk 28.6 1.7E+02 0.0037 19.1 5.9 57 113-169 68-126 (127)
495 cd08785 CARD_CARD9-like Caspas 28.6 1E+02 0.0022 18.5 3.2 42 31-72 20-64 (86)
496 KOG0275 Conserved WD40 repeat- 28.3 2.8E+02 0.0062 21.5 6.7 45 88-136 52-99 (508)
497 PF01335 DED: Death effector d 28.2 1.3E+02 0.0029 17.6 4.5 41 58-99 37-77 (84)
498 PRK09111 DNA polymerase III su 28.0 3.7E+02 0.008 22.7 8.3 28 147-175 264-291 (598)
499 cd08812 CARD_RIG-I_like Caspas 27.9 1.4E+02 0.0031 17.9 6.3 38 124-161 47-85 (88)
500 KOG3154 Uncharacterized conser 27.8 1.5E+02 0.0033 21.4 4.3 54 16-69 153-208 (263)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=253.34 Aligned_cols=173 Identities=25% Similarity=0.366 Sum_probs=165.2
Q ss_pred hhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh
Q 045063 3 SFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT 78 (175)
Q Consensus 3 ~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t 78 (175)
..+.+.|+.++ ++||++|++.|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|.+|.+.|+.||..|
T Consensus 248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t 327 (697)
T PLN03081 248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327 (697)
T ss_pred HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 34455555444 55999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCCh
Q 045063 79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLA 158 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~ 158 (175)
|++++.+|++.|++++|.++++.|.+.|+.||..+|++||++|+++|++++|.++|++|.+||+++||+||.+|++.|+.
T Consensus 328 ~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~ 407 (697)
T PLN03081 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRG 407 (697)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCC
Q 045063 159 KEAFGVFQAMTRERVEF 175 (175)
Q Consensus 159 ~~a~~~~~~m~~~g~~p 175 (175)
++|.++|++|.+.|+.|
T Consensus 408 ~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 408 TKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999999999988
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.7e-36 Score=247.78 Aligned_cols=174 Identities=24% Similarity=0.397 Sum_probs=166.7
Q ss_pred chhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063 2 LSFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY 77 (175)
Q Consensus 2 ~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 77 (175)
+.++++.|+.|+ ++||.+|++.|+++.|.++|++|+.+|.++||++|.+|++.|+.++|+++|.+|.+.|+.||..
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 445666666554 5599999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCC
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGL 157 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~ 157 (175)
||++++.+|++.|+++.|.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|.+||.++||+||.+|++.|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccCC
Q 045063 158 AKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p 175 (175)
+++|.++|++|.+.|+.|
T Consensus 370 ~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 370 PDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999999987
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=239.81 Aligned_cols=174 Identities=24% Similarity=0.410 Sum_probs=167.9
Q ss_pred chhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063 2 LSFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY 77 (175)
Q Consensus 2 ~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 77 (175)
+..+.+.|+.|+ +.|+.+|++.|+++.|.++|++|++||.++||++|.+|++.|++++|+++|++|++.|+.|+..
T Consensus 146 ~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 146 YWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 566777787776 4499999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCC
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGL 157 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~ 157 (175)
||+.++.+|++.|..+.+.+++..+.+.|+.||..+||+||++|+++|++++|.++|+.|.++|+++||+||.+|++.|+
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~ 305 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGY 305 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcccCC
Q 045063 158 AKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p 175 (175)
.++|.++|++|.+.|+.|
T Consensus 306 ~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 306 SEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 999999999999999987
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.5e-34 Score=238.81 Aligned_cols=173 Identities=25% Similarity=0.362 Sum_probs=165.0
Q ss_pred hhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh
Q 045063 3 SFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT 78 (175)
Q Consensus 3 ~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t 78 (175)
+++++.+..++ |+||.+|++.|+++.|+++|++|++||..+||++|.+|++.|++++|+++|++|+..|+.||..|
T Consensus 110 ~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t 189 (857)
T PLN03077 110 SRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYT 189 (857)
T ss_pred HHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 44455555443 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCCh
Q 045063 79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLA 158 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~ 158 (175)
|++++++|++.++++.+.+++..+.+.|+.||..+||++|++|++.|++++|.++|++|.+||.++||+||.+|++.|+.
T Consensus 190 ~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~ 269 (857)
T PLN03077 190 FPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269 (857)
T ss_pred HHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCC
Q 045063 159 KEAFGVFQAMTRERVEF 175 (175)
Q Consensus 159 ~~a~~~~~~m~~~g~~p 175 (175)
++|.++|++|.+.|+.|
T Consensus 270 ~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 270 LEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999999999999987
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-34 Score=238.00 Aligned_cols=174 Identities=17% Similarity=0.246 Sum_probs=154.2
Q ss_pred chhHHhhcCCCc----chhhhhhcCCCChhHHHHHhhhcc----CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC
Q 045063 2 LSFIRMTNFPAK----TCISIADALPKRYVYTHQVFDEIS----HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN 73 (175)
Q Consensus 2 ~~~~~~~~~~~~----~~ll~~~~~~~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~ 73 (175)
+.+|.+.|+.|+ ++||.+|++.|+++.|.++|++|. .||..+||+||.+|++.|++++|+++|++|++.|+.
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 566777777665 459999999999999999999997 478999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHhcCCCchhHHHHHHHHHH--hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC----CCchhHHH
Q 045063 74 LTAYTFTPVLGACSALPAPERGKQVHALMIK--GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF----KDVVTWNA 147 (175)
Q Consensus 74 ~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~ 147 (175)
||..||+.++++|++.|++++|.++|++|.+ .|+.||..+|+++|++|++.|++++|.++|+.|.+ |+..+||+
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyns 619 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI 619 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 9999999999999999999999999999975 57889999999999999999999999999999974 46789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 148 LLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
+|.+|++.|++++|.++|++|.+.|+.|
T Consensus 620 LI~ay~k~G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 620 AVNSCSQKGDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999988877
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.7e-34 Score=236.43 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=146.6
Q ss_pred cchhhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 13 KTCISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
+++||.+|++.|++++|.++|++|.+ |+..+||++|.+|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45588888888888888888888874 56788999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHHhcCChHHHHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
.|++++|.+++++|.+.|+.||..+|+++|++|++.|++++|.++|++|. .||.++||+||.+|++.|++++|.++
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlel 741 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999985 68999999999999999999999999
Q ss_pred HHHHHhcccCC
Q 045063 165 FQAMTRERVEF 175 (175)
Q Consensus 165 ~~~m~~~g~~p 175 (175)
|++|.+.|+.|
T Consensus 742 f~eM~~~Gi~P 752 (1060)
T PLN03218 742 LSEMKRLGLCP 752 (1060)
T ss_pred HHHHHHcCCCC
Confidence 99999988887
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.69 E-value=6.3e-17 Score=88.38 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=44.9
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
||+++||++|.+|++.|++++|+++|++|++.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998875
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.60 E-value=2.4e-15 Score=82.06 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=47.5
Q ss_pred CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 045063 74 LTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK 123 (175)
Q Consensus 74 ~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 123 (175)
||.++||+++++|++.|++++|.++|++|++.|+.||..||+.+|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999875
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.53 E-value=3.3e-13 Score=103.49 Aligned_cols=158 Identities=9% Similarity=0.032 Sum_probs=126.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+...+.+.|++++|.+.|+++.+ | +...+..+...+.+.|++++|.+.|+++.+.+......+++.+..++.+.|++
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCH
Confidence 44566788999999999988753 3 45567788888999999999999999987653332345678888899999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHh---cCChHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLR---HGLAKEAFGVFQA 167 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~---~g~~~~a~~~~~~ 167 (175)
++|...++.+.+. .|+...+..+...+.+.|++++|..+++.+. .|+...++.++..+.. .|+.+++..++++
T Consensus 266 ~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 266 AEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 9999999988875 4666677888899999999999999998765 4788888888888775 5588899999999
Q ss_pred HHhcccCC
Q 045063 168 MTRERVEF 175 (175)
Q Consensus 168 m~~~g~~p 175 (175)
|.+++++|
T Consensus 344 ~~~~~~~~ 351 (389)
T PRK11788 344 LVGEQLKR 351 (389)
T ss_pred HHHHHHhC
Confidence 99877665
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.41 E-value=1.4e-11 Score=94.49 Aligned_cols=154 Identities=9% Similarity=0.051 Sum_probs=101.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH----hhHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA----YTFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~----~t~~~ll~~~~~ 88 (175)
+...|.+.|+++.|..+|+++.+ .+..+++.++..+.+.|++++|.+.|..+.+.+..++. ..+..+...+.+
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 67777777888888888877754 35667777777777777777777777777655432221 134455556667
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC--chhHHHHHHHHHhcCChHHHHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KD--VVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~--~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.++|+.+.+ |+ ..+++.+..+|.+.|+.++|...
T Consensus 193 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 193 RGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776542 22344666666777777777777777777662 32 23466667777777777777777
Q ss_pred HHHHHh
Q 045063 165 FQAMTR 170 (175)
Q Consensus 165 ~~~m~~ 170 (175)
++++.+
T Consensus 272 l~~~~~ 277 (389)
T PRK11788 272 LRRALE 277 (389)
T ss_pred HHHHHH
Confidence 776654
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=1.5e-11 Score=92.76 Aligned_cols=127 Identities=14% Similarity=0.199 Sum_probs=107.2
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM 118 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 118 (175)
+...+|.+||.++||-...+.|.++|++-.....+.+..+||.++.+.+- ..+..+..+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 35568999999999999999999999999999999999999999987763 44488999999989999999999999
Q ss_pred HHHHhcCChHHHHH----HHHhcc----CCCchhHHHHHHHHHhcCChHH-HHHHHHHHH
Q 045063 119 DMYSKYGLLGESVE----AFKEIE----FKDVVTWNALLSSFLRHGLAKE-AFGVFQAMT 169 (175)
Q Consensus 119 ~~~~~~g~~~~a~~----~~~~m~----~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~ 169 (175)
.+..+.|+++.|.. ++.+|+ +|...+|..+|..++|.++..+ +..++.++.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 99999999988654 555555 7899999999999999988743 444444443
No 12
>PF12854 PPR_1: PPR repeat
Probab=99.25 E-value=1.3e-11 Score=61.42 Aligned_cols=34 Identities=32% Similarity=0.554 Sum_probs=26.2
Q ss_pred hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 105 GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 105 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888887774
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.20 E-value=1.1e-09 Score=91.32 Aligned_cols=153 Identities=6% Similarity=-0.025 Sum_probs=73.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+...+.+.|+++.|..+++.+.. .+...|..+..+|.+.|++++|...|+++.+.. +.+...+..+..++.+.|++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 44445555555555555555432 234445555555555555555555555554331 12233444455555555555
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++|...++.+.+.. +.+...+..+...+...|++++|.++++.+.+. +...|..+...+.+.|++++|...|+++.
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555554421 223344555555555555555555555544321 33344444455555555555555555544
Q ss_pred h
Q 045063 170 R 170 (175)
Q Consensus 170 ~ 170 (175)
+
T Consensus 731 ~ 731 (899)
T TIGR02917 731 K 731 (899)
T ss_pred h
Confidence 3
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.17 E-value=1.9e-09 Score=89.82 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=78.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+..++.+.|+++.|...|+++.+ .+...+..+..++.+.|++++|.+.|.++.+.. +.+..++..+...+...|++
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 55555566666666666665432 234445555555555555555555555554331 12233444444444444444
Q ss_pred hhHHHHHHHHHHhC--------------------------------CCcchHHHHHHHHHHHhcCChHHHHHHHHhccC-
Q 045063 93 ERGKQVHALMIKGG--------------------------------TDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF- 139 (175)
Q Consensus 93 ~~a~~~~~~m~~~~--------------------------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 139 (175)
++|..+++.+.+.. ..|+..++..+..+|.+.|++++|.+.++.+.+
T Consensus 686 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44444444444332 123334444445555555555555555544431
Q ss_pred -C-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 140 -K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 140 -~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
| +...++.+...|.+.|+.++|.+.|+++.+.
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 1 3445555555566666666666666665543
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=4.9e-10 Score=84.71 Aligned_cols=151 Identities=12% Similarity=0.060 Sum_probs=121.0
Q ss_pred cchhhhhhcCCCChhHHHHHhhhccCC----CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 13 KTCISIADALPKRYVYTHQVFDEISHG----DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
+.+||.+.|+-...+.|.+++.+-.+. +..+||.+|.+-.-. ...++..+|....++||..|||.+++|.++
T Consensus 210 ~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 210 VSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 344999999999999999999998753 778899998765433 238899999999999999999999999999
Q ss_pred CCCchh----HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH-HHHHHHhcc--------CC----CchhHHHHHHH
Q 045063 89 LPAPER----GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE-SVEAFKEIE--------FK----DVVTWNALLSS 151 (175)
Q Consensus 89 ~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~--------~~----~~~~~~~li~~ 151 (175)
.|+++. +.+++.+|++-|+.|...+|.-+|.-+.+.++..+ |..++.++. +| |..-|..-++.
T Consensus 286 fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~I 365 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSI 365 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHH
Confidence 997764 56888999999999999999999999999888755 444444332 22 45556677777
Q ss_pred HHhcCChHHHHHHHHH
Q 045063 152 FLRHGLAKEAFGVFQA 167 (175)
Q Consensus 152 ~~~~g~~~~a~~~~~~ 167 (175)
|.+..+.+-|.++..-
T Consensus 366 c~~l~d~~LA~~v~~l 381 (625)
T KOG4422|consen 366 CSSLRDLELAYQVHGL 381 (625)
T ss_pred HHHhhhHHHHHHHHHH
Confidence 8888888888776443
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.08 E-value=1.6e-10 Score=57.42 Aligned_cols=31 Identities=39% Similarity=0.672 Sum_probs=29.8
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 139 FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
.||.+|||+||++||+.|++++|.++|++|.
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 6899999999999999999999999999984
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.06 E-value=2.3e-08 Score=70.53 Aligned_cols=154 Identities=8% Similarity=-0.051 Sum_probs=107.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+...+...|+++.|...|++..+ | +...+..+...+...|++++|.+.|.+..+.. +.+...+..+-..+...|++
T Consensus 37 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccH
Confidence 56677778888888888887643 2 45567777778888888888888888776553 23445666667777778888
Q ss_pred hhHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGT-DSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
++|.+.+++...... ......+..+...|.+.|++++|...++.... | +...|..+...+...|++++|...+++.
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887775322 22334566677777788888888887777652 2 3456777777777888888888877776
Q ss_pred Hh
Q 045063 169 TR 170 (175)
Q Consensus 169 ~~ 170 (175)
.+
T Consensus 196 ~~ 197 (234)
T TIGR02521 196 QQ 197 (234)
T ss_pred HH
Confidence 54
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=99.02 E-value=6.1e-10 Score=55.32 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 142 VVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999998
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.97 E-value=8e-08 Score=67.76 Aligned_cols=155 Identities=8% Similarity=-0.036 Sum_probs=127.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~ 91 (175)
+...+...|+++.|.+.|++..+ .+...+..+...+...|++++|.+.|.+.......+ ....+..+-.++...|+
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD 150 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC
Confidence 77788899999999999998753 355678888899999999999999999997653323 33467777788899999
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+++|...+.+..+.. +.+...+..+...+...|++++|...++...+ .+...+..+...+...|+.+.|..+.+.+
T Consensus 151 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 151 FDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999988753 33466888999999999999999999998752 35567778888889999999999998877
Q ss_pred Hhc
Q 045063 169 TRE 171 (175)
Q Consensus 169 ~~~ 171 (175)
...
T Consensus 230 ~~~ 232 (234)
T TIGR02521 230 QKL 232 (234)
T ss_pred Hhh
Confidence 653
No 20
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.94 E-value=1.8e-09 Score=53.76 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 143 VTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
++||++|.+|++.|++++|.++|++|.+.|++|
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999988
No 21
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.92 E-value=1.7e-09 Score=53.92 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA 76 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~ 76 (175)
.+||++|.+|++.|++++|.++|.+|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999988988873
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.91 E-value=1.1e-08 Score=75.51 Aligned_cols=150 Identities=10% Similarity=0.017 Sum_probs=56.4
Q ss_pred hhhhhcCCCChhHHHHHhhhcc-----CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEIS-----HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
.+..+.+.++++.+..+++++. ..+...|..+...+.+.|+.++|.+.|++..+.. +-|......++..+...|
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMG 194 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCC
Confidence 3344444445555444444432 1233344444444445555555555555443321 112334444444444445
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
+.+++.+++....+.. +.|...|..+..+|...|+.++|...|+...+ | |..+...+-..+...|+.++|.++.++
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4444444444444332 23334444445555555555555555544431 2 334444444444455555555444443
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.89 E-value=2.8e-09 Score=52.86 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL 74 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~ 74 (175)
+.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.84 E-value=3.9e-08 Score=72.47 Aligned_cols=152 Identities=18% Similarity=0.192 Sum_probs=96.0
Q ss_pred hhhhhcCCCChhHHHHHhhhcc--CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEIS--HGDLSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
++.. ...++++.|.++++..- .++...+..++..+.+.|+++++.++++...+. ..+.+...|...-..+.+.|+.
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 4444 68888999988887753 346677888999999999999999999997654 3455667888888889999999
Q ss_pred hhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
++|...+++..+. .| |....+.++..+...|+.+++.+++.... ..|...|..+-.+|...|+.++|..+|++.
T Consensus 163 ~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccc
Confidence 9999999999885 35 57788999999999999999888877765 347788999999999999999999999987
Q ss_pred Hh
Q 045063 169 TR 170 (175)
Q Consensus 169 ~~ 170 (175)
..
T Consensus 241 ~~ 242 (280)
T PF13429_consen 241 LK 242 (280)
T ss_dssp HH
T ss_pred cc
Confidence 65
No 25
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.81 E-value=6.7e-09 Score=50.29 Aligned_cols=31 Identities=35% Similarity=0.632 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063 143 VTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 173 (175)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999999885
No 26
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.81 E-value=4.3e-07 Score=74.07 Aligned_cols=153 Identities=9% Similarity=-0.101 Sum_probs=124.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-.++...|++++|...|++..+ | ....|..+...+...|++++|...|++..+.. +-+...|..+-..+...|++
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 44566678999999999998754 4 35578888888999999999999999986652 23456888888889999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++|...|++..+.. +.+...+..+...+.+.|++++|...|+...+ | +...|+.+-..+...|++++|...|++-.
T Consensus 416 ~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al 494 (615)
T TIGR00990 416 AQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI 494 (615)
T ss_pred HHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999988753 33466788888999999999999999998763 3 56788899999999999999999988865
Q ss_pred h
Q 045063 170 R 170 (175)
Q Consensus 170 ~ 170 (175)
+
T Consensus 495 ~ 495 (615)
T TIGR00990 495 E 495 (615)
T ss_pred h
Confidence 4
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.78 E-value=7.1e-07 Score=73.28 Aligned_cols=120 Identities=8% Similarity=-0.088 Sum_probs=56.3
Q ss_pred HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchh----HHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063 49 FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPER----GKQVHALMIKGGTDSEPVVKTALMDMYSKY 124 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 124 (175)
.++.+.|++++|...|.+..+.. +-+...+..+-..+.+.|++++ |...+++..+.. +.+...+..+...+.+.
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHC
Confidence 34444444444444444443321 1122234444444444555443 444444444321 12233555555555555
Q ss_pred CChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 125 GLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 125 g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
|++++|...++... .| +...+..+...+.+.|++++|...|+++.+
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555543 22 233445555555566666666666655543
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.75 E-value=9.1e-07 Score=72.64 Aligned_cols=154 Identities=12% Similarity=0.009 Sum_probs=123.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcch----HHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPA----TWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~----a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
+..++.+.|++++|...|++..+ .+...+..+-..+.+.|++++ |...|++..+.. +-+...+..+-..+.+
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 34667788999999999988753 356678889999999999986 899999987652 2245588899999999
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchh-HHHHHHHHHhcCChHHHHHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVT-WNALLSSFLRHGLAKEAFGVF 165 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~-~~~li~~~~~~g~~~~a~~~~ 165 (175)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|...++.+. .|+... +..+..++...|+.++|...|
T Consensus 297 ~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999998753 2345577888999999999999999999887 454433 334566788999999999999
Q ss_pred HHHHhc
Q 045063 166 QAMTRE 171 (175)
Q Consensus 166 ~~m~~~ 171 (175)
++..+.
T Consensus 376 ~~al~~ 381 (656)
T PRK15174 376 EHYIQA 381 (656)
T ss_pred HHHHHh
Confidence 987654
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=98.72 E-value=1.1e-06 Score=70.80 Aligned_cols=117 Identities=9% Similarity=-0.026 Sum_probs=50.4
Q ss_pred hcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHH
Q 045063 20 DALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGK 96 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~ 96 (175)
+...|++++|...|++..+ | +...|..+-.++...|++++|...+++..+..... ...+..+...+...|++++|.
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHH
Confidence 3444555555555555432 2 23344444555555555555555555543332111 111111222233344555555
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 97 QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
..+++..+...+-+...+..+..+|...|++++|...+..+
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 55555443221112223444444555555555555555544
No 30
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.72 E-value=5.2e-07 Score=66.84 Aligned_cols=147 Identities=14% Similarity=0.021 Sum_probs=110.5
Q ss_pred hhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh----cCCCch
Q 045063 18 IADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS----ALPAPE 93 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~----~~~~~~ 93 (175)
..+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++. ....++
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHH
Confidence 4567789999999988765 566677888999999999999999999997652 33 33344444443 334799
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLA-KEAFGVFQAMT 169 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 169 (175)
+|..+|+++.+. ..+++.+.+.+.-++...|++++|.+++.+.... |..+...+|.+....|+. +.+.+.+.++.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 999999998654 6788899999999999999999999999987643 555666677777788877 66777888776
Q ss_pred h
Q 045063 170 R 170 (175)
Q Consensus 170 ~ 170 (175)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.71 E-value=4.7e-07 Score=77.01 Aligned_cols=165 Identities=12% Similarity=0.071 Sum_probs=138.6
Q ss_pred CCCcchhhhhhcCCCChhHHHHHhhhccCC--CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh
Q 045063 10 FPAKTCISIADALPKRYVYTHQVFDEISHG--DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS 87 (175)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~ 87 (175)
+..|.++++.-..-|.-+...++|++..+- ....|..|...|.+...+++|-++|+.|.+. +.-....|....+.+.
T Consensus 1497 LNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1497 LNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHh
Confidence 456777777777778888899999998863 4667999999999999999999999999877 3356678999999999
Q ss_pred cCCCchhHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHH
Q 045063 88 ALPAPERGKQVHALMIKGGT-DSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
+..+-+.|..++.+..+.-. +-+.....-.+..-.+.|+.+.+..+|+..... -...|+.+|+.=.+.|+.+.+..
T Consensus 1576 ~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1576 RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999887421 124556677777778999999999999998733 57789999999999999999999
Q ss_pred HHHHHHhcccCC
Q 045063 164 VFQAMTRERVEF 175 (175)
Q Consensus 164 ~~~~m~~~g~~p 175 (175)
+|++..+.++.|
T Consensus 1656 lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1656 LFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHhcCCCh
Confidence 999999888765
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.70 E-value=1.7e-06 Score=73.63 Aligned_cols=143 Identities=10% Similarity=-0.042 Sum_probs=61.7
Q ss_pred cCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHH
Q 045063 21 ALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQ 97 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~ 97 (175)
...|++++|...|+++.. ++...+..+...+.+.|+.++|.+.|.+..+.. |+. ..+..+.....+.|++++|..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 355556666555555432 222233344444455555555555555544332 111 122222222333345555555
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 98 VHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 98 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
.+++..+. .|+...|..+...+.+.|++++|...++... .| +...++.+-..+...|+.++|...+++
T Consensus 598 ~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 598 DLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55444432 2334444444444445555555544444443 12 223333333444444444444444443
No 33
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.68 E-value=1.3e-06 Score=71.21 Aligned_cols=150 Identities=7% Similarity=-0.011 Sum_probs=68.6
Q ss_pred hhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 19 ADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
++...|++++|...|++..+ | +...+..+..++.+.|++++|+..|.+..+. .+-+...++.+-..+...|++++|
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHH
Confidence 34444444444444444321 1 2333444444444555555555555554332 111233444455555555555555
Q ss_pred HHHHHHHHHhCCCc-----ch-HHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 96 KQVHALMIKGGTDS-----EP-VVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 96 ~~~~~~m~~~~~~~-----~~-~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
...|++..+..... +. ..++.....|...|++++|.+.++... .| +...+..+...+.+.|++++|...|+
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 55555544321100 00 011112222233455555555555432 22 33356666666677777777777666
Q ss_pred HHH
Q 045063 167 AMT 169 (175)
Q Consensus 167 ~m~ 169 (175)
+..
T Consensus 567 ~A~ 569 (615)
T TIGR00990 567 RAA 569 (615)
T ss_pred HHH
Confidence 653
No 34
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.65 E-value=3e-08 Score=47.95 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCL 72 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 72 (175)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=98.65 E-value=2.7e-06 Score=68.61 Aligned_cols=146 Identities=8% Similarity=-0.092 Sum_probs=114.2
Q ss_pred CCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchhHHH
Q 045063 22 LPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPERGKQ 97 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~a~~ 97 (175)
..++++.|...+++..+ | +...+..+-..+...|++++|...|++..+.+ |+ ...+..+-..+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 44668999999998764 3 66778888888899999999999999987663 44 4477778888999999999999
Q ss_pred HHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccC---CC-chhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 98 VHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEF---KD-VVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 98 ~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.+++..+.. |+. ..+..+...+...|++++|...+++..+ |+ ...+..+-.++...|+.++|...++++...
T Consensus 394 ~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 394 TINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 999998753 443 2333445556778999999999988752 43 445677778888999999999999887543
No 36
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.64 E-value=9.7e-07 Score=67.76 Aligned_cols=120 Identities=9% Similarity=-0.004 Sum_probs=99.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
|+..+...++++.|.++|+++.+.+......+...+...++-.+|.+++++..+. .+-+......-.+.+.+.++.+.|
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 7788888899999999999998877777778888888888888999999998754 223455555566778889999999
Q ss_pred HHHHHHHHHhCCCcchH-HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 96 KQVHALMIKGGTDSEPV-VKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
..+.++..+ +.|+.+ +|..|..+|...|+++.|...++.++
T Consensus 254 L~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999887 456665 99999999999999999999988886
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.64 E-value=2.6e-07 Score=75.48 Aligned_cols=149 Identities=13% Similarity=0.024 Sum_probs=90.3
Q ss_pred chhhhhhcCCCChhHHHHHhhhccCC----CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063 14 TCISIADALPKRYVYTHQVFDEISHG----DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89 (175)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~ 89 (175)
.++|.-||..|+++.|- +|.-|+-+ +...|+.++.+..++|+.+.+. .|.+.||+.|+++|..+
T Consensus 29 qsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ayr~h 96 (1088)
T KOG4318|consen 29 QSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLKAYRIH 96 (1088)
T ss_pred HHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHHHHHhc
Confidence 34777777777776666 66666543 3445666666666666666554 57778999999999999
Q ss_pred CCch---hHHHHHHHHH----HhCCCcchH-H-------------HHHHHHHHHhcCChHHHHHH---------------
Q 045063 90 PAPE---RGKQVHALMI----KGGTDSEPV-V-------------KTALMDMYSKYGLLGESVEA--------------- 133 (175)
Q Consensus 90 ~~~~---~a~~~~~~m~----~~~~~~~~~-~-------------~~~li~~~~~~g~~~~a~~~--------------- 133 (175)
|++. .+++.+.... ..|+..... . -.+.+.-....|.++.+.++
T Consensus 97 GDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 97 GDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 8754 3333222222 222211100 0 01111222222333333322
Q ss_pred -HHhcc------------------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 045063 134 -FKEIE------------------FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174 (175)
Q Consensus 134 -~~~m~------------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 174 (175)
++++. .+++.+|.+++.+-...|+.+.|..++.+|.++|+.
T Consensus 177 fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 177 FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 33332 257889999999999999999999999999999964
No 38
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.63 E-value=4e-06 Score=70.13 Aligned_cols=155 Identities=7% Similarity=-0.031 Sum_probs=106.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCC-------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-----------CCCH-
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGD-------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-----------NLTA- 76 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-----------~~~~- 76 (175)
+-.+|...|++++|...|+++.+.+ ......+..++.+.|++++|...+.++.+... .|+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5567777888888888888764321 12355566677788888888888888765421 1221
Q ss_pred --hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHH
Q 045063 77 --YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSS 151 (175)
Q Consensus 77 --~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~ 151 (175)
..+..+...+...|+.++|.+.++++... -+-+...+..+...+...|++++|.+.++... .| +...+-.+...
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 23445556677778888888888887764 23456678888888888888888888888766 34 34455566667
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 045063 152 FLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~ 171 (175)
+.+.|+++.|..+++++.+.
T Consensus 437 al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHh
Confidence 77888888888888887653
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.63 E-value=2.2e-06 Score=73.00 Aligned_cols=152 Identities=7% Similarity=-0.111 Sum_probs=122.8
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHH---HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLN---SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~---~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+..++.+.|++++|...|++..+.+....+ .+.....+.|++++|...|.+..+. .|+...+..+-.++.+.|+.
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~ 625 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNV 625 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCH
Confidence 455678899999999999988654332233 3333444569999999999998654 35677888999999999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++|...+++..... +.+...++.+-..+...|++++|.+.++... .| +...+..+-.++...|+.++|...|++..
T Consensus 626 deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 626 PAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999998753 2345678888889999999999999999876 34 66789999999999999999999999876
Q ss_pred h
Q 045063 170 R 170 (175)
Q Consensus 170 ~ 170 (175)
+
T Consensus 705 ~ 705 (987)
T PRK09782 705 D 705 (987)
T ss_pred h
Confidence 5
No 40
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.57 E-value=7.1e-07 Score=55.87 Aligned_cols=81 Identities=7% Similarity=0.021 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCCHhhHHHHHHHHhcCC--------CchhHHHHHHHHHHhCCCcchHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLTAYTFTPVLGACSALP--------APERGKQVHALMIKGGTDSEPVV 113 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~~~t~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~ 113 (175)
+-...|..+...+++.....+|...+++|+ .|+..+|+.++.+.++.. ++.....+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345667777778999999999999999999 899999999999998754 35577889999999999999999
Q ss_pred HHHHHHHHHh
Q 045063 114 KTALMDMYSK 123 (175)
Q Consensus 114 ~~~li~~~~~ 123 (175)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 41
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.54 E-value=8.5e-06 Score=71.07 Aligned_cols=157 Identities=6% Similarity=-0.051 Sum_probs=123.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
+...+...|+.++|.++++.-+ .+...+..+-..+.+.|++++|.+.|++..+.. +-+...+..+...+...|+.++|
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 4556788999999999998433 355567788899999999999999999987752 23456888999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-Cc------hhHHHHHHHHHhcCChHHHHHHHH
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DV------VTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~------~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
.+.++...+.. +.+...+..+..++...|++++|.++++.... | +. ..+..+-..+.+.|+.++|...|+
T Consensus 657 ~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 657 RAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999877532 23455677788899999999999999999863 2 11 345555677889999999999999
Q ss_pred HHHh-cccCC
Q 045063 167 AMTR-ERVEF 175 (175)
Q Consensus 167 ~m~~-~g~~p 175 (175)
+-.. .|+.|
T Consensus 736 ~Al~~~~~~~ 745 (1157)
T PRK11447 736 DAMVASGITP 745 (1157)
T ss_pred HHHhhcCCCC
Confidence 8754 35543
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.47 E-value=1.7e-05 Score=66.42 Aligned_cols=150 Identities=11% Similarity=-0.000 Sum_probs=111.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCc--hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDL--SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~ 88 (175)
-.....+.|+++.|...|++..+ |+. ..+ .++..+...|+.++|+..+++.. .|+.. ....+-..+..
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHH
Confidence 34456789999999999999874 432 234 88888889999999999999986 34333 33333456778
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHh--cCChHHHHHHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLR--HGLAKEAFGVFQ 166 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~--~g~~~~a~~~~~ 166 (175)
.|++++|.++++++.+.. +-+...+..++..|...++.++|.+.++...+.+......+..++.. .++..+|++.++
T Consensus 115 ~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 115 EKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 899999999999999864 23456777889999999999999999999885543332224445554 555656999999
Q ss_pred HHHhc
Q 045063 167 AMTRE 171 (175)
Q Consensus 167 ~m~~~ 171 (175)
++.+.
T Consensus 194 kll~~ 198 (822)
T PRK14574 194 EAVRL 198 (822)
T ss_pred HHHHh
Confidence 98775
No 43
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.44 E-value=1.6e-05 Score=57.02 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=114.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CC-c---hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CCH-hhHHHHHHHHh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GD-L---SSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LTA-YTFTPVLGACS 87 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~~-~t~~~ll~~~~ 87 (175)
+...+.+.|+++.|...|+++.. |+ . ..+..+-.++.+.|++++|...|++..+.... |.. .++..+-.++.
T Consensus 39 ~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 39 EAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence 66678899999999999998754 32 1 35677888999999999999999999765322 221 13444444444
Q ss_pred cC--------CCchhHHHHHHHHHHhCCCcch-HHH-----------------HHHHHHHHhcCChHHHHHHHHhccC--
Q 045063 88 AL--------PAPERGKQVHALMIKGGTDSEP-VVK-----------------TALMDMYSKYGLLGESVEAFKEIEF-- 139 (175)
Q Consensus 88 ~~--------~~~~~a~~~~~~m~~~~~~~~~-~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~-- 139 (175)
+. |+.+.|...++...+.. |+. ..+ -.+...|.+.|++++|...++....
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 119 NQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY 196 (235)
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence 33 67888999999988753 332 121 1445678889999999999998763
Q ss_pred C----CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 140 K----DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 140 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
| ....|..+...+.+.|+.++|..+++++..+
T Consensus 197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 197 PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2 2357889999999999999999999988764
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.2e-05 Score=61.81 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=101.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC------CchhH-------------------------------HHHHHHHHhCCCcc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG------DLSSL-------------------------------NSQLFSYTRSRNFP 58 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~------~~~~~-------------------------------~~li~~~~~~g~~~ 58 (175)
.-.+.....++|.|+.+|+.+... |..+| .++-+-|+-.++++
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHE 347 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHE 347 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHH
Confidence 444566778888899999888642 33333 33334444456778
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 59 ATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 59 ~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
.|...|++.++.+. -....|+.+-+=+....+...|.+-+...++- .+.|-..|=.|=.+|.-.+...-|.-.|+...
T Consensus 348 KAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 348 KAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 88888887755421 23347777777777777777777777777664 24456677777777777777777777776654
Q ss_pred --CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 139 --FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 139 --~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+| |...|.+|-.+|.+.++.++|...|+.-..
T Consensus 426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 33 677777777777777777777777766544
No 45
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.37 E-value=4.3e-05 Score=64.10 Aligned_cols=154 Identities=10% Similarity=0.039 Sum_probs=113.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-----------CCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-----------NLT 75 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-----------~~~ 75 (175)
+-++|...++++.|..+++++..+ +......|..+|...+++++|..+.+++.+... .||
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 888888889999999998887431 222357788888889999999999998876311 122
Q ss_pred H--h-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHH
Q 045063 76 A--Y-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALL 149 (175)
Q Consensus 76 ~--~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li 149 (175)
. . .+..+...+.-.|++++|++.++.+.... +-|......+.+.+...|..++|.+.++... .| |..+.-...
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~ 491 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQA 491 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHH
Confidence 2 1 34445666778888999999999887643 4577788888899999999999988887754 44 455666677
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 045063 150 SSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.++...|+++.|..+.+.+.+
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHh
Confidence 777788888888887766644
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.36 E-value=1.2e-06 Score=71.73 Aligned_cols=91 Identities=11% Similarity=0.030 Sum_probs=59.9
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 045063 62 ALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD 141 (175)
Q Consensus 62 ~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 141 (175)
+++..|...|+.|+.+||..++.-||..|+.+.|. +|..|+-.....+...|+.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 34555666677777777777777777777776666 6666665556666666777776666666666653 566
Q ss_pred chhHHHHHHHHHhcCChHH
Q 045063 142 VVTWNALLSSFLRHGLAKE 160 (175)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~ 160 (175)
..||+.|..+|.++||+..
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 6667777777777766544
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.36 E-value=2.9e-05 Score=65.06 Aligned_cols=150 Identities=9% Similarity=0.025 Sum_probs=121.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-C--CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-G--DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
.+......|+.++|.+++.+... . +...+..+...+.+.|++++|..+|.+..+. -+.+...+..+...+...|++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL-EPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCH
Confidence 56677789999999999999764 2 4445899999999999999999999998665 233455677788888999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
++|...+++..+.. +.+.. +..+..++...|+.++|...+++..+ | +...+..+...+...|+.+.|++.++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998762 34455 88888999999999999999999873 4 4556677788888889999898887743
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.35 E-value=3e-05 Score=67.71 Aligned_cols=92 Identities=8% Similarity=0.027 Sum_probs=62.8
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLR 154 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~ 154 (175)
.+..+-..+.+.|+.++|...++...+.. +.+...+..+...|...|++++|.+.++...+. +...+..+-..+.+
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 44445555666777777777777777642 234567777777787888888888777776532 34456666667777
Q ss_pred cCChHHHHHHHHHHHh
Q 045063 155 HGLAKEAFGVFQAMTR 170 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~~ 170 (175)
.|+.++|.+++++...
T Consensus 684 ~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIP 699 (1157)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 8888888888877654
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.34 E-value=1.7e-05 Score=61.45 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=35.1
Q ss_pred hhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063 18 IADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL 72 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 72 (175)
..+...|+++.|...+++..+ | +......+...|.+.|++++|.+++..+.+.+.
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 355566777777777666643 2 455566666777777777777777776665543
No 50
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.33 E-value=6.3e-05 Score=56.06 Aligned_cols=153 Identities=14% Similarity=0.006 Sum_probs=90.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~ 91 (175)
+-..+.+.|+.+.|...|++..+ | +...|+.+-..+.+.|++++|.+.|++..+. .|+ ..+|..+-.++...|+
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 33456667777777777776543 2 5566777777777777777777777776543 333 3466666666677777
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---C----------------------------
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---K---------------------------- 140 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~---------------------------- 140 (175)
+++|.+.++...+.. |+..........+...++.++|.+.|..... +
T Consensus 148 ~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~ 225 (296)
T PRK11189 148 YELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGA 225 (296)
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcC
Confidence 777777777766532 3322111111112334555555555533210 0
Q ss_pred ---------CchhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 045063 141 ---------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRER 172 (175)
Q Consensus 141 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 172 (175)
....|..+-..+.+.|+.++|...|++-.+.+
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 11245556666778888888888888776544
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.32 E-value=5.5e-05 Score=53.39 Aligned_cols=155 Identities=10% Similarity=-0.067 Sum_probs=115.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~ 91 (175)
|-..|...|++..|...+++..+. +..+|..+-..|-+.|..+.|.+-|....+. .|+. .+.|.--..+|..|.
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCC
Confidence 666788889999999888887653 4556788888888889999998888887543 3433 356666666788888
Q ss_pred chhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
+++|.+.|++....---+ -..+|..+.-+..+.|+++.|...|++-.+. .....-.+-....+.|+...|...++.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 999998888887643322 2458888888888899999998888887633 445666777777788888888877776
Q ss_pred HHhcc
Q 045063 168 MTRER 172 (175)
Q Consensus 168 m~~~g 172 (175)
....|
T Consensus 199 ~~~~~ 203 (250)
T COG3063 199 YQQRG 203 (250)
T ss_pred HHhcc
Confidence 65543
No 52
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.31 E-value=7.8e-06 Score=57.19 Aligned_cols=103 Identities=9% Similarity=0.110 Sum_probs=87.7
Q ss_pred hhHHHHHhhhc--cCCCchhHHHHHHHHHhC-----CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC--------
Q 045063 26 YVYTHQVFDEI--SHGDLSSLNSQLFSYTRS-----RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP-------- 90 (175)
Q Consensus 26 ~~~a~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~-------- 90 (175)
+......|++. ..++..+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+-+..
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 34456777776 567999999999999875 677777888889999999999999999999997743
Q ss_pred --------CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH
Q 045063 91 --------APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG 128 (175)
Q Consensus 91 --------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (175)
..+.|..++++|...|+-||..++..+++.|++.+..-
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 35688999999999999999999999999999887643
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.28 E-value=7.8e-05 Score=57.88 Aligned_cols=143 Identities=13% Similarity=0.026 Sum_probs=114.5
Q ss_pred CCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHH
Q 045063 22 LPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQV 98 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~ 98 (175)
+..+.+...++++.++. .+......+...+.+.|+.++|.+++.+..+. .|+. -..++.+....++++++.+.
T Consensus 241 ~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~ 316 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKV 316 (398)
T ss_pred HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHH
Confidence 34456667777777764 37778899999999999999999999998774 3333 11234445566899999999
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 99 HALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 99 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
.+...+.. +-|.....++-..+.+.|++++|.+.|+... .|+...|-.|-..+.+.|+.++|.+++++=.
T Consensus 317 ~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 317 LRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99888753 3455678889999999999999999999986 6788888999999999999999999998753
No 54
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=4.7e-05 Score=58.65 Aligned_cols=120 Identities=8% Similarity=0.066 Sum_probs=97.2
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063 45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY 124 (175)
Q Consensus 45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 124 (175)
..++..+...++++.|.++|+++.+.. |+. ...+...+...++..+|.+++.+..+. .+.+........+.+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 344455555799999999999997765 443 345677777778888888888888864 345677888888999999
Q ss_pred CChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 125 GLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 125 g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++++.|..+.++.. .| +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999987 45 56699999999999999999999998875
No 55
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=0.00015 Score=48.17 Aligned_cols=125 Identities=13% Similarity=0.083 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH--hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH--HHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA--YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPV--VKTAL 117 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l 117 (175)
..|..++..+ ..++...+...++.+....-.-.. ...-.+-..+...|++++|...|+........|+.. ..-.+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3466777777 478888888889998776322212 234445577788999999999999999876333332 44556
Q ss_pred HHHHHhcCChHHHHHHHHhccCC--CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 118 MDMYSKYGLLGESVEAFKEIEFK--DVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
...+...|++++|...++....+ ....+...-..|.+.|+.++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78888999999999999876543 344667777889999999999998875
No 56
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=4.6e-05 Score=58.93 Aligned_cols=149 Identities=13% Similarity=0.181 Sum_probs=87.4
Q ss_pred CCCChhHHHHHhhhccCCCchhHHHHH---HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHH
Q 045063 22 LPKRYVYTHQVFDEISHGDLSSLNSQL---FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQV 98 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~ 98 (175)
..|+++.|.+.+++....|...-..|. -.+-+.|++++|++.|-.+..- +.-+..+.--+-+.|-...++..|.++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 468888888888887766554432222 1344567777777777665321 111222333333444444444444444
Q ss_pred HHHHHHh---------------------------------CCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCch
Q 045063 99 HALMIKG---------------------------------GTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVV 143 (175)
Q Consensus 99 ~~~m~~~---------------------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~ 143 (175)
+-+.... =++-+..+...|...|....-++++...|+... +|+.+
T Consensus 581 ~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 581 LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 3332221 123344455555555555555666666666543 78999
Q ss_pred hHHHHHHHHH-hcCChHHHHHHHHHHHhc
Q 045063 144 TWNALLSSFL-RHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 144 ~~~~li~~~~-~~g~~~~a~~~~~~m~~~ 171 (175)
-|..||..|. |+|+..+|++++++..+.
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999987665 789999999999987653
No 57
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.21 E-value=2.3e-05 Score=60.77 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=88.5
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL 117 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 117 (175)
+.....+++..+....+.+.+.+++.+.+.. ....-..|..+++..|.+.|..+.+..++..=...|+=||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4555677777777777778888888888766 33333345668888888888888888888888888888888999999
Q ss_pred HHHHHhcCChHHHHHHHHhccCC----CchhHHHHHHHHHhc
Q 045063 118 MDMYSKYGLLGESVEAFKEIEFK----DVVTWNALLSSFLRH 155 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~ 155 (175)
|+.+.+.|++..|.++...|... +..|+..-+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999988888888887633 556676666666665
No 58
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.20 E-value=0.00017 Score=56.13 Aligned_cols=153 Identities=10% Similarity=-0.048 Sum_probs=100.0
Q ss_pred hhhcCCCChhHHHHHhhhccC--CCc--hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 18 IADALPKRYVYTHQVFDEISH--GDL--SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
.+..+.|+++.|.+.+.+..+ |+. ...-.....+...|+++.|.+.++.+.+.. +-+......+...+.+.|+++
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence 445566888888888887532 332 233445677777888888888888887664 223346777788888888888
Q ss_pred hHHHHHHHHHHhCCCcchHH-------HHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEPVV-------KTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~-------~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
++...+..+.+.+..+.... +..+++.-......+...++++..++ .+...+-.+...+...|+.+.|.+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 88888888887765333222 11112111222333455555555543 367778888888888888888888
Q ss_pred HHHHHHhc
Q 045063 164 VFQAMTRE 171 (175)
Q Consensus 164 ~~~~m~~~ 171 (175)
++++..+.
T Consensus 285 ~l~~~l~~ 292 (409)
T TIGR00540 285 IIFDGLKK 292 (409)
T ss_pred HHHHHHhh
Confidence 88887653
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=8.6e-05 Score=49.38 Aligned_cols=106 Identities=10% Similarity=0.054 Sum_probs=78.0
Q ss_pred HHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc
Q 045063 31 QVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE 110 (175)
Q Consensus 31 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 110 (175)
.+|++..+-+...+...-.++.+.|++++|...|....... +.+...|..+-.++.+.|++++|...|+...+.. +.+
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~ 91 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASH 91 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 44555444333345556777788888888888888875542 2355677888888888888888888888888743 346
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 111 PVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
...+..+-.++.+.|++++|...|+...
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al 119 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAI 119 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6788888888888888888888888865
No 60
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.17 E-value=0.00018 Score=50.46 Aligned_cols=97 Identities=5% Similarity=-0.058 Sum_probs=44.0
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH-hcCCC--chhHHHHHHHHHHhCCCcchHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC-SALPA--PERGKQVHALMIKGGTDSEPVVKTA 116 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~-~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~ 116 (175)
|...|..+-..|...|++++|...|++..+... -+...+..+-.++ .+.|+ .++|.+++++..+.. +-+...+..
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~ 149 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALML 149 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHH
Confidence 444455555555555555555555554433211 1222333333332 33333 255555555555432 123344455
Q ss_pred HHHHHHhcCChHHHHHHHHhcc
Q 045063 117 LMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+...+.+.|++++|...|+.+.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555555555555543
No 61
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=2.3e-05 Score=62.49 Aligned_cols=155 Identities=9% Similarity=-0.009 Sum_probs=109.5
Q ss_pred CCcchhhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh---HHHHHH
Q 045063 11 PAKTCISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT---FTPVLG 84 (175)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t---~~~ll~ 84 (175)
.+|.++=++|.-.++.+.|.+.|++..+ | ...+|+.+-.-+....+++.|..-|... +..|... |--+--
T Consensus 422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~ 497 (638)
T KOG1126|consen 422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYGLGT 497 (638)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHhhhh
Confidence 4566688899999999999999998764 3 5667777777777788888888888776 3344444 444456
Q ss_pred HHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHH
Q 045063 85 ACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a 161 (175)
.+.+.++.+.|+-.|+...+-+ +.+.+....+-..+-+.|+.|+|.+++++.. ..|+..--.....+...++.++|
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred heeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence 6778888888888887776532 2345566777777788888888888888754 23555544455556666777777
Q ss_pred HHHHHHHHh
Q 045063 162 FGVFQAMTR 170 (175)
Q Consensus 162 ~~~~~~m~~ 170 (175)
++.++++++
T Consensus 577 l~~LEeLk~ 585 (638)
T KOG1126|consen 577 LQELEELKE 585 (638)
T ss_pred HHHHHHHHH
Confidence 777777654
No 62
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.15 E-value=0.00013 Score=58.43 Aligned_cols=148 Identities=7% Similarity=0.031 Sum_probs=94.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~ 91 (175)
|-..|...|++|.|...+++..+ |+ ...||.|-.++-..|+..+|.+.|...+.. -|+. .+.+.|-+.+...|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGK 369 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcc
Confidence 55667788888888888887653 32 446888888888888888888888776543 2332 366677777777777
Q ss_pred chhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhcc--CCC-chhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIE--FKD-VVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
++.|..+|..... +.|+. ..++.|...|-..|.+++|...+++.. +|+ ...|+-+-..|-..|+++.|.+.+.+
T Consensus 370 ~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~r 447 (966)
T KOG4626|consen 370 IEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTR 447 (966)
T ss_pred chHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHH
Confidence 7777777776655 34443 366777777777777777777777654 232 22344444444444444444444433
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.15 E-value=0.00012 Score=58.09 Aligned_cols=155 Identities=11% Similarity=0.067 Sum_probs=117.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC-------Cchh----HHHHHHHHHhCCCcchHHHHHHHHHhc-----C-CCCCH-h
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG-------DLSS----LNSQLFSYTRSRNFPATWALFCYMHST-----C-LNLTA-Y 77 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~-------~~~~----~~~li~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~-~ 77 (175)
|...|...|+++.|..+|.+..+- +... -+.+-..|...+++.+|..+|.++..- | ..|.+ .
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~ 284 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAA 284 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 888999999999999999986431 2222 344556788889999999999998642 2 22333 3
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHH---h--CC-CcchH-HHHHHHHHHHhcCChHHHHHHHHhcc-------CC-C-
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIK---G--GT-DSEPV-VKTALMDMYSKYGLLGESVEAFKEIE-------FK-D- 141 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~---~--~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~-------~~-~- 141 (175)
+++.|-..|.+.|++++|+..+++..+ . |. .|.+. .++.+...+...+++++|..+++... .+ +
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 788888889999999999888877652 1 22 23333 56888888999999999988887654 22 3
Q ss_pred --chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 142 --VVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 142 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+++.|-..|...|++++|.+++++...
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 24799999999999999999999998754
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.12 E-value=0.00057 Score=50.97 Aligned_cols=150 Identities=6% Similarity=-0.182 Sum_probs=110.6
Q ss_pred hhhhcCCCChhHHHHHhhhccC-----C--CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063 17 SIADALPKRYVYTHQVFDEISH-----G--DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~ 89 (175)
.......+..+.+..-+.++.. | ....|..+-..|.+.|+.++|...|.+..+.. +-+...|+.+-..+...
T Consensus 33 ~~~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 33 AVPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQA 111 (296)
T ss_pred ccccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHC
Confidence 3344445666667776666543 1 23457777788999999999999999987653 23456899999999999
Q ss_pred CCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC--CCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF--KDVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
|++++|.+.++...+. .|+ ...|..+..++...|++++|.+.|+...+ |+..........+...++.++|.+.|+
T Consensus 112 g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 112 GNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999999874 454 56888899999999999999999998763 433222222333446778999999997
Q ss_pred HHH
Q 045063 167 AMT 169 (175)
Q Consensus 167 ~m~ 169 (175)
+..
T Consensus 190 ~~~ 192 (296)
T PRK11189 190 QRY 192 (296)
T ss_pred HHH
Confidence 644
No 65
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.11 E-value=0.0001 Score=58.99 Aligned_cols=152 Identities=8% Similarity=0.037 Sum_probs=91.7
Q ss_pred chhhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcC
Q 045063 14 TCISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSAL 89 (175)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~ 89 (175)
+.|-+++-.-|++.+|...+.+... .-..+-+.|-..|.+.|.+++|..+|....+- .|. +..++.|-..+-+.
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhc
Confidence 3366677777777777777776542 23445666666777777777777776665432 222 23566666666666
Q ss_pred CCchhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccCCCc---hhHHHHHHHHHhcCChHHHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEFKDV---VTWNALLSSFLRHGLAKEAFGVF 165 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~li~~~~~~g~~~~a~~~~ 165 (175)
|++++|...|.+.++ ++|+. ..++.+=..|-..|+++.|.+.+.....-|. ...+-|-+.|--.|++.+|.+-+
T Consensus 402 gnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred ccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 666666666666654 55554 3566666666666666666666655543322 24555566666666666666666
Q ss_pred HHHH
Q 045063 166 QAMT 169 (175)
Q Consensus 166 ~~m~ 169 (175)
++-.
T Consensus 480 ~~aL 483 (966)
T KOG4626|consen 480 RTAL 483 (966)
T ss_pred HHHH
Confidence 5543
No 66
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.11 E-value=0.00015 Score=53.67 Aligned_cols=127 Identities=12% Similarity=0.104 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcC-CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTC-LNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
.+|..++...-+.+.++.|.++|.+.++.+ .........+.+... ..++.+.|..+|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457777777777777777788887776442 222222333333322 235556677777777765 55666777777777
Q ss_pred HHhcCChHHHHHHHHhccCC------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 121 YSKYGLLGESVEAFKEIEFK------DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+.|+.+.|..+|+..... -...|..+|.-=.+.|+.+.+..+.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777877788777776632 234677777777777777777777766654
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.11 E-value=0.0002 Score=53.08 Aligned_cols=151 Identities=10% Similarity=0.086 Sum_probs=74.7
Q ss_pred hcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh----hHHHHHHHHhcCCCc
Q 045063 20 DALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY----TFTPVLGACSALPAP 92 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~----t~~~ll~~~~~~~~~ 92 (175)
|...|-+|.|+.+|..+.+.+ ...---|+..|-+..+++.|.+.=++..+.+-.+..+ -|.-+-.......++
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 334444444444444444321 1223344444444455555555444443332222211 122222222333444
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCc----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDV----VTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+.|..++.+..+.. +..+..--.+-+.+...|+++.|.+.++.+.+.|. .+-..|..+|.+.|+.++....+.++
T Consensus 197 d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 197 DRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55555555444322 11122222233555667777777777777665543 25667777888888888888887777
Q ss_pred Hhc
Q 045063 169 TRE 171 (175)
Q Consensus 169 ~~~ 171 (175)
.+.
T Consensus 276 ~~~ 278 (389)
T COG2956 276 MET 278 (389)
T ss_pred HHc
Confidence 654
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.05 E-value=0.0002 Score=56.87 Aligned_cols=154 Identities=10% Similarity=0.053 Sum_probs=120.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccC----------CCch-hHHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCC----Hh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH----------GDLS-SLNSQLFSYTRSRNFPATWALFCYMHST---CLNLT----AY 77 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~----------~~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~----~~ 77 (175)
|-.+|++.|++++|...++...+ +.+. .++.+...++..+++++|..++..-.+. -+.++ ..
T Consensus 289 La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~ 368 (508)
T KOG1840|consen 289 LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAK 368 (508)
T ss_pred HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHH
Confidence 66789999999999998887532 2222 2788888899999999999999886532 12222 24
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHh----CC--Ccc-hHHHHHHHHHHHhcCChHHHHHHHHhcc------CC---C
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKG----GT--DSE-PVVKTALMDMYSKYGLLGESVEAFKEIE------FK---D 141 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~---~ 141 (175)
+++.+-..+.+.|++++|+.++...++. +- .+. ...++.+-..|.+.+..++|.++|.+-. .| |
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 8999999999999999999999988843 12 222 3467888899999999999999998854 23 2
Q ss_pred -chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 142 -VVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 142 -~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
..+|--|...|.+.|+++.|.++.....
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3468889999999999999999987765
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.03 E-value=0.00068 Score=52.86 Aligned_cols=141 Identities=13% Similarity=0.001 Sum_probs=104.5
Q ss_pred hhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhH-HHHHHHHhcCCCchhHHHHHHH
Q 045063 26 YVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTF-TPVLGACSALPAPERGKQVHAL 101 (175)
Q Consensus 26 ~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~-~~ll~~~~~~~~~~~a~~~~~~ 101 (175)
.+...+.++..+. .+...+..+...+.+.|+.++|.+++.+..+.........+ ....-.....++.+.+...++.
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~ 324 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEK 324 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHH
Confidence 4455556666654 37888999999999999999999999999775332221111 2222222345677888888877
Q ss_pred HHHhCCCcch---HHHHHHHHHHHhcCChHHHHHHHH--hc--cCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 102 MIKGGTDSEP---VVKTALMDMYSKYGLLGESVEAFK--EI--EFKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 102 m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~--~m--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
..+. .|+. ....++-..+.+.|++++|.+.|+ .. ..||...+..+...+.+.|+.++|.+++++-
T Consensus 325 ~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 325 QAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7764 3443 456678888899999999999999 34 2688888999999999999999999999874
No 70
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.02 E-value=0.00016 Score=48.05 Aligned_cols=93 Identities=10% Similarity=-0.095 Sum_probs=79.7
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLR 154 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~ 154 (175)
.+...-..+.+.|++++|...|+...... +.+...|..+-.++.+.|++++|...|+.... | +...|..+-.++.+
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 35556677889999999999999998753 34677999999999999999999999999874 3 67789999999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 045063 155 HGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~~~ 171 (175)
.|+.++|...|++..+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987653
No 71
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.01 E-value=5.7e-05 Score=58.63 Aligned_cols=109 Identities=9% Similarity=-0.019 Sum_probs=90.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-C-----CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-G-----DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~ 89 (175)
+++.+....++|.+..++-+.+. | -..+..++|.-|.+.|..+.++.++..=...|+-||..|||.||+.+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 77888888888889888887764 2 12344699999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY 124 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 124 (175)
|++..|.++..+|...+...+..|+.--+.++.+.
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999998766666666666555555554
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.00 E-value=0.0006 Score=47.85 Aligned_cols=146 Identities=8% Similarity=-0.010 Sum_probs=111.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
-+..|...|+++.+..-...+..+. . .+...++.+++...+....+. -+.|...|..+-..+...|+.++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456888899988866654433332 1 122366677777777776554 335666999999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHH-HHhcCC--hHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDM-YSKYGL--LGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
...+++..+.. +-+...+..+..+ |...|+ .++|.+++++..+ | +...+..+-..+...|++++|...|+++.
T Consensus 93 ~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 93 LLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999998854 3366788888886 467777 5999999999873 3 67789999999999999999999999987
Q ss_pred hc
Q 045063 170 RE 171 (175)
Q Consensus 170 ~~ 171 (175)
+.
T Consensus 172 ~l 173 (198)
T PRK10370 172 DL 173 (198)
T ss_pred hh
Confidence 63
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00053 Score=48.58 Aligned_cols=156 Identities=8% Similarity=-0.113 Sum_probs=125.2
Q ss_pred chhhhhhcCCCChhHHHHHhhhcc---CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcC
Q 045063 14 TCISIADALPKRYVYTHQVFDEIS---HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSAL 89 (175)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~ 89 (175)
..+-..|-+.|+.+.|.+-|++.. ..+..+-|..-.-+|..|++++|...|++.....--+. ..||..+.-|..+.
T Consensus 73 ~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~ 152 (250)
T COG3063 73 LVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKA 152 (250)
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc
Confidence 348888999999999999999864 34777889999999999999999999999887743333 35899999999999
Q ss_pred CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
|.+..|+..+++-.+.. +-.....-.+.....+.|++-.|...++..... +..+.-..|.---+.|+.+.+.++=.
T Consensus 153 gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 153 GQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred CCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999998753 223457778888889999999999999887644 44455556776678899888877655
Q ss_pred HHHh
Q 045063 167 AMTR 170 (175)
Q Consensus 167 ~m~~ 170 (175)
++.+
T Consensus 232 qL~r 235 (250)
T COG3063 232 QLQR 235 (250)
T ss_pred HHHH
Confidence 5543
No 74
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=2.2e-05 Score=62.56 Aligned_cols=148 Identities=13% Similarity=0.061 Sum_probs=115.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC------------------------------------C-CchhHHHHHHHHHhCCCcc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH------------------------------------G-DLSSLNSQLFSYTRSRNFP 58 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~------------------------------------~-~~~~~~~li~~~~~~g~~~ 58 (175)
+=.+|-..++++.|+++|+.+.. | ...+|.++-++|.-.++++
T Consensus 359 ~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~ 438 (638)
T KOG1126|consen 359 LGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHD 438 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHH
Confidence 55677788999999999998753 1 3567888888998889999
Q ss_pred hHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHH---HHHHHHhcCChHHHHHHH
Q 045063 59 ATWALFCYMHSTCLNL-TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTA---LMDMYSKYGLLGESVEAF 134 (175)
Q Consensus 59 ~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~ 134 (175)
.|++.|++..+ +.| ...+|+.+-.=+....+++.|...|...+ ..|...||+ +--.|.|.++++.|+..|
T Consensus 439 ~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 439 TAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred HHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence 99999988743 445 44577777777777788888888888764 455555554 556788999999999999
Q ss_pred HhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 135 KEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 135 ~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+...+ .|.+.-..+...+-+.|+-++|++++++-.
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 98763 367777777778889999999999998854
No 75
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.00014 Score=45.74 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=64.0
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCC--------hHHHHHHHHhcc----CCCchh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGT-DSEPVVKTALMDMYSKYGL--------LGESVEAFKEIE----FKDVVT 144 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~----~~~~~~ 144 (175)
|-..-+..|...+++.....+|+.+++.|+ .|+..+|+.++.+.++... +-+...+++.|. +|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667777778999999999999999999 9999999999999887542 334566677665 899999
Q ss_pred HHHHHHHHHhc
Q 045063 145 WNALLSSFLRH 155 (175)
Q Consensus 145 ~~~li~~~~~~ 155 (175)
||+++.++.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999987653
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.97 E-value=0.00058 Score=51.86 Aligned_cols=147 Identities=9% Similarity=0.043 Sum_probs=101.0
Q ss_pred hhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCC----CcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCC
Q 045063 19 ADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSR----NFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALP 90 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g----~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~ 90 (175)
.+...|+++.|.+.+++..+ | +...++. ...+...| ....+.+.+.. ..+..|+.. ....+-..+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 45677899999999988653 3 3334443 22333333 44444444433 122333332 4445556778899
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC-----CCc--hhHHHHHHHHHhcCChHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF-----KDV--VTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~--~~~~~li~~~~~~g~~~~a~~ 163 (175)
++++|...+++..+.. +.+...+..+...|...|++++|...++...+ ++. ..|..+...+...|+.++|..
T Consensus 129 ~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 129 QYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999998853 33456788888999999999999999988663 222 346677888899999999999
Q ss_pred HHHHHH
Q 045063 164 VFQAMT 169 (175)
Q Consensus 164 ~~~~m~ 169 (175)
++++..
T Consensus 208 ~~~~~~ 213 (355)
T cd05804 208 IYDTHI 213 (355)
T ss_pred HHHHHh
Confidence 999875
No 77
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.96 E-value=0.0012 Score=50.10 Aligned_cols=149 Identities=12% Similarity=0.003 Sum_probs=118.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
++.=....+..+.-...++..+. .+...-.+++.-+.+.|+.++|.++.++-.+.+..|+ -+.+-.+.+.++.
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~ 310 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDP 310 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCc
Confidence 44444555555555556666663 3677778899999999999999999999998888888 4556677888888
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+.-.+..++-.+. .+-+...+.+|=..|.+.+.+.+|.+.|+.-. .|+..+|+.+-.+|.+.|+..+|.+..++-.
T Consensus 311 ~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 311 EPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8777777766643 22344788899999999999999999999765 6789999999999999999999999988754
No 78
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00058 Score=52.97 Aligned_cols=157 Identities=12% Similarity=0.008 Sum_probs=133.1
Q ss_pred CcchhhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 12 AKTCISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
+...+-+-|+-.++.+.|...|+...+ .-...|+.|-.-|....+...|.+-|.....- -+.|...|-.|-++|.-
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEI 410 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHH
Confidence 334477888889999999999998754 46778999999999999999999999998654 33466699999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVF 165 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 165 (175)
.+.+.-|.-.|++..+.. +-|...|.+|-++|.+.++.++|..-|.....- +...+..|-+.|-+.++..+|.+.|
T Consensus 411 m~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~y 489 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYY 489 (559)
T ss_pred hcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999988742 456789999999999999999999999987643 4478999999999999999999988
Q ss_pred HHHHh
Q 045063 166 QAMTR 170 (175)
Q Consensus 166 ~~m~~ 170 (175)
++-.+
T Consensus 490 ek~v~ 494 (559)
T KOG1155|consen 490 EKYVE 494 (559)
T ss_pred HHHHH
Confidence 87654
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.00064 Score=50.51 Aligned_cols=156 Identities=13% Similarity=0.030 Sum_probs=100.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-CCchh------HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-GDLSS------LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-~~~~~------~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
|=+.|-+.|.+|.|..+-..+-. ||... ---|-.-|...|-++.|.++|......|. .-......|+..|-+
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~ 153 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHH
Confidence 55667777777777777666544 33322 22344556667777888888877755422 223356667777777
Q ss_pred CCCchhHHHHHHHHHHhCCCcchH----HHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPV----VKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a 161 (175)
..++++|..+-+++.+.+-.+... -|.-|...+.-..+++.|.+++....+ | .+..--++-+.+...|+++.|
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~A 233 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKA 233 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHH
Confidence 888888888877777665444432 456666666677778888777777653 2 222333445556788888888
Q ss_pred HHHHHHHHhcc
Q 045063 162 FGVFQAMTRER 172 (175)
Q Consensus 162 ~~~~~~m~~~g 172 (175)
++.++...+++
T Consensus 234 V~~~e~v~eQn 244 (389)
T COG2956 234 VEALERVLEQN 244 (389)
T ss_pred HHHHHHHHHhC
Confidence 88888877665
No 80
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.00072 Score=52.56 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=70.2
Q ss_pred hcCCCChhHHHHHhhhcc--CC-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchhH
Q 045063 20 DALPKRYVYTHQVFDEIS--HG-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~a 95 (175)
+...|+++.|++.++.+. .| |...+......+.+.|+.++|.+.++.+... .|+ ....-.+-+++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 345566666666666654 24 3444455556666777777777777776443 233 34555556666677777777
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
..++...... .+-|...|..|..+|...|+..++.....+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 7666666554 345666777777777777776666655554
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.92 E-value=0.00049 Score=44.79 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=65.3
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+......+...+.+.|++++|.+.|+.....+ +.+...+..+-.++.+.|++++|...+++..+.. +.+...+-.+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33445566667777777888887777775543 2345566667777777777777777777766543 334556666677
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 045063 120 MYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (175)
.|...|++++|...|+...
T Consensus 94 ~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 94 CLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777665
No 82
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.92 E-value=0.00072 Score=55.98 Aligned_cols=127 Identities=14% Similarity=0.059 Sum_probs=102.0
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTAL 117 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l 117 (175)
+...+-.|-....+.|++++|..+++...+ +.|+.. ....+..++.+.+++++|....++.... .|+ ......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 466677788888889999999999998844 456655 7788888899999999999999998874 344 4566777
Q ss_pred HHHHHhcCChHHHHHHHHhccCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 118 MDMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
-.++.+.|++++|..+|++...++ ...|-.+-.++-..|+.++|...|++-.+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788889999999999999987553 45677777788889999999999988754
No 83
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.88 E-value=0.00026 Score=52.63 Aligned_cols=121 Identities=8% Similarity=0.054 Sum_probs=90.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHh----CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTR----SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
.+.+|.+.+++|.|.+.++.|++- +-.+-.-+..++.. ...+.+|..+|+++... ..++..+.+.+..+....|
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhC
Confidence 678889999999999999999863 22333334444333 34799999999998654 6678889999999999999
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh-HHHHHHHHhcc
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL-GESVEAFKEIE 138 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~ 138 (175)
++++|.+++.+..... +-+..+...++-+....|+. +.+.+.+.++.
T Consensus 216 ~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 216 HYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp -HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999999999876543 44667888888888888887 77888998877
No 84
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.00084 Score=52.39 Aligned_cols=141 Identities=9% Similarity=0.082 Sum_probs=80.9
Q ss_pred CChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063 24 KRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHA 100 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~ 100 (175)
+++..|+++|+.... .+...|-..+.+=.++..+.-|..+|++....-.+.|- -|---+..=-..|++..|+++|+
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHHHHH
Confidence 455566666666543 35556666666666666666666666666444222222 22222222234566666666666
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 101 LMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 101 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
.-.+ ..|+...|.+.|+.-.+-...+.|..+++... -|++.+|--...-=-++|++..|..+|..
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6554 45666666666666666666666666666654 45666665555555556665555555544
No 85
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.0016 Score=46.87 Aligned_cols=125 Identities=14% Similarity=0.012 Sum_probs=89.9
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
|...-+..+....+.|++.+|...|.+...- -++|...|+.+--+|-+.|+.+.|+.-|.+..+.- .-+....|.+.-
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHH
Confidence 4444555777778888888888888887443 34566688888888888888888888888877642 234456778888
Q ss_pred HHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 120 MYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
.|.-.|++++|..++..-. ..|..+-.-+--.-...|++++|..+-.
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888888888888887754 2266666666666678888888877643
No 86
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.84 E-value=0.0003 Score=41.65 Aligned_cols=90 Identities=13% Similarity=0.036 Sum_probs=44.2
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063 45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY 124 (175)
Q Consensus 45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 124 (175)
..+...+...|++++|.+.|.+..+.. +.+...+..+-.++...+++++|...++...+.. +.+...+..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555566666666666554431 1122344444555555555555555555554432 12223445555555555
Q ss_pred CChHHHHHHHHh
Q 045063 125 GLLGESVEAFKE 136 (175)
Q Consensus 125 g~~~~a~~~~~~ 136 (175)
|++++|...+..
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 555555555544
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.84 E-value=0.00073 Score=43.97 Aligned_cols=92 Identities=9% Similarity=0.009 Sum_probs=61.2
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLR 154 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~ 154 (175)
....+...+.+.|+.++|...++.....+ +.+...|..+...|.+.|++++|...++...+ | +...|..+-..|..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34455566667777777777777776643 33556777777777777777777777776642 2 44556666667777
Q ss_pred cCChHHHHHHHHHHHh
Q 045063 155 HGLAKEAFGVFQAMTR 170 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~~ 170 (175)
.|+.++|...|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777776554
No 88
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00036 Score=50.43 Aligned_cols=117 Identities=11% Similarity=-0.004 Sum_probs=72.3
Q ss_pred hhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh----cCCCch
Q 045063 18 IADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS----ALPAPE 93 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~----~~~~~~ 93 (175)
..|++.|++++|.+.... -.+......=...+.|..+++.|.+..++|.+. -+..|.+-|-+++. ..+...
T Consensus 116 ~i~~~~~~~deAl~~~~~--~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHL--GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 356677777777777655 223333333344555666677777777777544 23345554444443 334567
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK 140 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (175)
.|.-+|++|.+. ..|+..+.+-..-+....|++++|..++++...+
T Consensus 191 dAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 191 DAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777777777543 5677777777777777777777777777776544
No 89
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=0.00014 Score=43.55 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=42.4
Q ss_pred CCCchhHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHH
Q 045063 89 LPAPERGKQVHALMIKGGT-DSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVF 165 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 165 (175)
.|+++.|..+++++.+... .++...+-.+..+|.+.|++++|.++++... ..+....-.+-.+|.+.|++++|.+.|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3556666666666665432 1233444446666667777777766665521 112233334455566667777776666
Q ss_pred HH
Q 045063 166 QA 167 (175)
Q Consensus 166 ~~ 167 (175)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=9.8e-05 Score=54.92 Aligned_cols=120 Identities=8% Similarity=-0.083 Sum_probs=81.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCchhH-HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDLSSL-NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
|-.+|.+..+++.|..+|.+-.+ |.-+|| .-+-..+-..+..++|.++|+...+. -+.+.....++-..+.-.+++
T Consensus 262 LskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 262 LSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred HHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCCh
Confidence 55566666777777776666543 333333 33445555566777777777776544 223444566666667777889
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
|-|...+.++.+.|+ .+...|+.+--++.-.+++|-+..-|++.
T Consensus 341 E~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 341 EMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 999999999999886 47788888888888888888777766654
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.78 E-value=0.00051 Score=40.62 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=74.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhc
Q 045063 79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRH 155 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~ 155 (175)
+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|.+.++.... .+..+|..+...+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 4455667778899999999999987753 23447788899999999999999999988653 3556788888999999
Q ss_pred CChHHHHHHHHHHHhc
Q 045063 156 GLAKEAFGVFQAMTRE 171 (175)
Q Consensus 156 g~~~~a~~~~~~m~~~ 171 (175)
|+.+.|...+++..+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999999887654
No 92
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00058 Score=49.49 Aligned_cols=170 Identities=9% Similarity=-0.025 Sum_probs=127.2
Q ss_pred chhHHhhcCCCcchhhhhhcCCCChhHHHHHhhhccCC--C--------chhHHHHHHHHHhCCCcchHHHHHHHHHhcC
Q 045063 2 LSFIRMTNFPAKTCISIADALPKRYVYTHQVFDEISHG--D--------LSSLNSQLFSYTRSRNFPATWALFCYMHSTC 71 (175)
Q Consensus 2 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 71 (175)
|+.+.+..-.||++|...+.-...++.....|+.-..| . ...-++++.++.-.|.+.-.++++++.++..
T Consensus 128 hAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 128 HAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 45666777788888888887777777777776654332 2 3345777788888899999999999998877
Q ss_pred CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH-----HHHHhcCChHHHHHHHHhccCC---Cch
Q 045063 72 LNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM-----DMYSKYGLLGESVEAFKEIEFK---DVV 143 (175)
Q Consensus 72 ~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~---~~~ 143 (175)
.+-+.+-...+....-+.|+.+.|...|+...+..-+.|..+++.++ ..|.-.+++..|...++++... |.+
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~ 287 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV 287 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh
Confidence 67778888888888999999999999999888765556665555555 4455677888888888887744 444
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.-|.---+..-.|+...|.+.++.|.+.
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4554444455678899999999988765
No 93
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.00012 Score=54.08 Aligned_cols=123 Identities=12% Similarity=0.044 Sum_probs=92.1
Q ss_pred cchhhhhhcCCCChhHHHHHhhhccCCCchhH-----HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh
Q 045063 13 KTCISIADALPKRYVYTHQVFDEISHGDLSSL-----NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS 87 (175)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~-----~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~ 87 (175)
|..++...-+.+.++.|+++|.+..+.+..+| .++|+.+ -.++.+.|.++|+...+. +.-+..-|..-++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 44466777778889999999999986543333 3333222 245666799999998776 5566677888889999
Q ss_pred cCCCchhHHHHHHHHHHhCCCcch---HHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 88 ALPAPERGKQVHALMIKGGTDSEP---VVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+.++.+.++.+|++.... +.++. ..|...++.=.+.|+.+.+..+.+.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999865 44443 599999999999999999999888876
No 94
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.001 Score=44.12 Aligned_cols=118 Identities=8% Similarity=-0.040 Sum_probs=85.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchh-HH-----HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHh
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSS-LN-----SQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACS 87 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~-~~-----~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~ 87 (175)
++..+ ..++.+.+...++.+......+ |. .+-..+...|++++|...|+........|+.. ....+-..+.
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 33334 4788899988888887532221 32 34477888999999999999998876444332 4455677788
Q ss_pred cCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 88 ALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
..|++++|...++..... ......+...-+.|.+.|+.++|...|+.
T Consensus 97 ~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 97 QQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999764332 23344666777999999999999999875
No 95
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0003 Score=52.44 Aligned_cols=150 Identities=9% Similarity=-0.071 Sum_probs=110.9
Q ss_pred hhhhhcCCCChhHHHHHhhhcc--CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhH-HHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEIS--HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTF-TPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~-~~ll~~~~~~~~~ 92 (175)
|=.+|.+.|.+.+|.+.|..-. .|-+.||-.|-++|-+....+.|+.+|.+-... + |-.+|| .-+-...-..+..
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-f-P~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-F-PFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-C-CchhhhhhhhHHHHHHHHhH
Confidence 7778888888888888887753 367778888888888888888888888876544 3 444443 3344455556778
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+++.+++....+.. +.++....++...|.-.++.|-|.+.+.++. ..+...|+.+--||.-.+++|-++.-|.+-
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 88888888877653 4567778888888888888888888888765 346667777777777888888887777654
No 96
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.70 E-value=0.00012 Score=51.38 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=66.0
Q ss_pred cCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCC----------------CcchHHHHHHHHHhcCCCCCHhhHH
Q 045063 21 ALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSR----------------NFPATWALFCYMHSTCLNLTAYTFT 80 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g----------------~~~~a~~l~~~m~~~~~~~~~~t~~ 80 (175)
.+.|.++-....+..|.+ .|..+|+.||.++=+.. .-+-|++++++|...|+.||..|+.
T Consensus 63 ~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~ 142 (228)
T PF06239_consen 63 RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQ 142 (228)
T ss_pred CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 356888888888888874 79999999999998732 2267999999999999999999999
Q ss_pred HHHHHHhcCCCc-hhHHHHHHHHH
Q 045063 81 PVLGACSALPAP-ERGKQVHALMI 103 (175)
Q Consensus 81 ~ll~~~~~~~~~-~~a~~~~~~m~ 103 (175)
.|++.+.+.+.+ .+...+.=+|.
T Consensus 143 ~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 143 MLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHhccccHHHHHHHHHHHHHH
Confidence 999999988753 44444444444
No 97
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.0012 Score=47.49 Aligned_cols=123 Identities=7% Similarity=-0.072 Sum_probs=101.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
......+.|++..|...|++... +|...|+-+--+|.+.|++++|..-|.+..+-.. -+....+.+--.+.-.|+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCH
Confidence 44666788999999999999864 5889999999999999999999999999866522 2334667777778888999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK 140 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (175)
+.|..++......+ .-|..+-..+.-.-+..|++++|..+...-..+
T Consensus 185 ~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 185 EDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred HHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 99999999887754 347788888999999999999999988775544
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.67 E-value=0.002 Score=53.45 Aligned_cols=131 Identities=10% Similarity=-0.022 Sum_probs=105.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~ 91 (175)
|-....+.|.+|+|..+++...+ | +...+-.+..++.+.+++++|+...++.... .|+.. ....+-.++.+.|.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc
Confidence 66677789999999999999864 5 5666888999999999999999999998654 35544 56666677789999
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALL 149 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li 149 (175)
.++|..+|++....+ +-+..++..+-.++-+.|+.++|...|+... .+...-|+-++
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 999999999999832 2336799999999999999999999999875 23444555443
No 99
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.003 Score=43.16 Aligned_cols=113 Identities=7% Similarity=0.000 Sum_probs=78.8
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL 117 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 117 (175)
....|..+-..+...|++++|...|.+..+....+. ...+..+-..+.+.|+.++|...+.+..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 455678888888899999999999999876543332 3578888888899999999999999888742 2245567777
Q ss_pred HHHHHhcCC--------------hHHHHHHHHhccCCCchhHHHHHHHHH
Q 045063 118 MDMYSKYGL--------------LGESVEAFKEIEFKDVVTWNALLSSFL 153 (175)
Q Consensus 118 i~~~~~~g~--------------~~~a~~~~~~m~~~~~~~~~~li~~~~ 153 (175)
...|...|+ +++|.++++.....+...|..++.-+.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 162 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK 162 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence 778877776 344555555554444443444444333
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.62 E-value=0.0037 Score=48.78 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMYS 122 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~ 122 (175)
|..-+..| ..|..++|++.+...... .+-|..-+....+.+.+.++.++|.+.++.+... .|+ ...+-.+-.+|.
T Consensus 310 YG~A~~~~-~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 310 YGRALQTY-LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHH-HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 44444444 668999999999997655 3334445555577888999999999999999874 566 567888889999
Q ss_pred hcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 123 KYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 123 ~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+.|+..+|...++.-.. | |...|..|-.+|...|+..++..-.-|..
T Consensus 386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999998763 3 78899999999999999888887766654
No 101
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.62 E-value=0.015 Score=44.41 Aligned_cols=129 Identities=14% Similarity=0.018 Sum_probs=67.8
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch-------HHHHHH
Q 045063 45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEP-------VVKTAL 117 (175)
Q Consensus 45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l 117 (175)
-+.-......|+.+.|..-.++..+.+. -+.........++.+.|++.....+...+.+.|.-.+. .+|+.+
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 3333344444444444444444433321 12233444445555555555555555555554443332 234444
Q ss_pred HHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 045063 118 MDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 174 (175)
++=....+..+.-.+.+++.+ +.++..--+++.-+.+.|+.++|.++.++-.+++..
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D 295 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD 295 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 444444444444444555444 224555667777888999999999998887766544
No 102
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0036 Score=42.56 Aligned_cols=117 Identities=6% Similarity=-0.051 Sum_probs=77.5
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL 117 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 117 (175)
....|..+...+...|++++|+..|.+.......+. ..++..+-..+...|+.++|...++...... +.....+..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 355678888888889999999999999865533332 3478888888889999999999998887642 2234566666
Q ss_pred HHHHH-------hcCChHHH-------HHHHHhccCCCchhHHHHHHHHHhcCC
Q 045063 118 MDMYS-------KYGLLGES-------VEAFKEIEFKDVVTWNALLSSFLRHGL 157 (175)
Q Consensus 118 i~~~~-------~~g~~~~a-------~~~~~~m~~~~~~~~~~li~~~~~~g~ 157 (175)
...|. +.|+++.| ..+++.....+...+...-..+...|+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 66776 77777644 444444444444444444433443443
No 103
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.57 E-value=0.0082 Score=48.22 Aligned_cols=162 Identities=10% Similarity=0.038 Sum_probs=118.1
Q ss_pred hHHhhcCCCcch-hhhhhcCCCChhHHHHHhhhccC------------------CCchhH--HHHHHHHHhCCCcchHHH
Q 045063 4 FIRMTNFPAKTC-ISIADALPKRYVYTHQVFDEISH------------------GDLSSL--NSQLFSYTRSRNFPATWA 62 (175)
Q Consensus 4 ~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~f~~~~~------------------~~~~~~--~~li~~~~~~g~~~~a~~ 62 (175)
..++.|+++-=. |-..|....+.+...+++..... |.+..| ..+-..|-..|+.++|++
T Consensus 136 ~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~ 215 (517)
T PF12569_consen 136 PQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALE 215 (517)
T ss_pred HHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 345556544322 66777777777777777776421 122234 555677888999999999
Q ss_pred HHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 045063 63 LFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD 141 (175)
Q Consensus 63 l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 141 (175)
..++-.+. .|+.+ -|..--..+.+.|++.+|...++...+... -|..+-+-.+..+.++|++++|.+++....+++
T Consensus 216 ~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 216 YIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 99987665 36644 777778889999999999999999887543 477788888899999999999999999887664
Q ss_pred ch----------hHHH--HHHHHHhcCChHHHHHHHHHH
Q 045063 142 VV----------TWNA--LLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 142 ~~----------~~~~--li~~~~~~g~~~~a~~~~~~m 168 (175)
.. +|-. --.+|.+.|+...|+.-|...
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 21 2322 355788999988887766554
No 104
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.57 E-value=0.0034 Score=39.52 Aligned_cols=96 Identities=7% Similarity=-0.009 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCC--CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCC--cchHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCL--NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTD--SEPVVKTALM 118 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li 118 (175)
++-.....+.+.|++++|.+.|....+..- ......+..+-.++.+.|+++.|...++........ .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344556667777888888888888765421 111335555677777788888888888877753211 1234566666
Q ss_pred HHHHhcCChHHHHHHHHhcc
Q 045063 119 DMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~ 138 (175)
.++.+.|+.++|...+++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHhCChHHHHHHHHHHH
Confidence 77777888888877777765
No 105
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.54 E-value=0.00014 Score=43.60 Aligned_cols=81 Identities=14% Similarity=0.096 Sum_probs=50.9
Q ss_pred CCCcchHHHHHHHHHhcCC-CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHH
Q 045063 54 SRNFPATWALFCYMHSTCL-NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVE 132 (175)
Q Consensus 54 ~g~~~~a~~l~~~m~~~~~-~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 132 (175)
.|+++.|+.+|+++.+... .++...+-.+-.++.+.|+.++|..+++. .+.+. .+....-.+..+|.+.|++++|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677888888888766533 23444455577778888888888888877 22211 222333345677788888888888
Q ss_pred HHHh
Q 045063 133 AFKE 136 (175)
Q Consensus 133 ~~~~ 136 (175)
+++.
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7764
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.51 E-value=0.008 Score=50.14 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=111.6
Q ss_pred hhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchh
Q 045063 19 ADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPER 94 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~ 94 (175)
.|++ |++++|.+++.+... .....|-+|-..|-+.|++++++..+--. +-+.|+ ..-|..+-+-..+.|.+.+
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3455 999999999999753 36778999999999999999998776554 334444 4589999999999999999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCc----h----hHHHHHHHHHhcCChHHHHHHHH
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDV----V----TWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~----~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
|.-.|.+.++.. +++...+=--+..|-+.|+...|.+-|.++-..+. . .--.++..|...++.+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999864 45666666777889999999999888888764322 1 22233455666677777777766
Q ss_pred HHH
Q 045063 167 AMT 169 (175)
Q Consensus 167 ~m~ 169 (175)
.-.
T Consensus 305 ~~~ 307 (895)
T KOG2076|consen 305 GAL 307 (895)
T ss_pred HHH
Confidence 544
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.50 E-value=0.0033 Score=54.79 Aligned_cols=125 Identities=14% Similarity=0.030 Sum_probs=61.3
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCC---CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNL---TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTA 116 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 116 (175)
...|-..|....+.++++.|.+++++.+.. +++- -...|.++++--...|.-+...++|++..+. .-....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 334555555555555555555555555433 1111 1124555555444445555555555555442 112334555
Q ss_pred HHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 117 LMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
|...|.+.+.+++|-++++.|.++ ...+|..++..+.+..+.+.|.+++++
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 555555555555555555555432 334555555555555555555554444
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.50 E-value=0.0096 Score=42.59 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=94.6
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCC-cch-HHH
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTD-SEP-VVK 114 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~ 114 (175)
.....+-.+...+.+.|++++|...|++...... .|. ..++..+-.++.+.|++++|...++.+.+.... |.. ..+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3556677888889999999999999999866522 122 236777888999999999999999999875321 111 134
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHhccC--CCc-hhHH-----------------HHHHHHHhcCChHHHHHHHH
Q 045063 115 TALMDMYSKY--------GLLGESVEAFKEIEF--KDV-VTWN-----------------ALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 115 ~~li~~~~~~--------g~~~~a~~~~~~m~~--~~~-~~~~-----------------~li~~~~~~g~~~~a~~~~~ 166 (175)
..+-.++... |++++|.+.|+...+ |+. ..+. .+-..|.+.|+..+|...++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4444555543 788999999998863 322 2221 23455778899999999999
Q ss_pred HHHhc
Q 045063 167 AMTRE 171 (175)
Q Consensus 167 ~m~~~ 171 (175)
+..+.
T Consensus 191 ~al~~ 195 (235)
T TIGR03302 191 TVVEN 195 (235)
T ss_pred HHHHH
Confidence 88754
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.48 E-value=0.0032 Score=53.36 Aligned_cols=130 Identities=12% Similarity=0.089 Sum_probs=90.1
Q ss_pred hHHhhcCCCcch-----hhhhhcCCCChhHHHHHhhhccC--CC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC
Q 045063 4 FIRMTNFPAKTC-----ISIADALPKRYVYTHQVFDEISH--GD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT 75 (175)
Q Consensus 4 ~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~ 75 (175)
+..-.++.|.+. |+..+.+.+++++|.++.+...+ |+ ...|-.+-..+.+.++.+++.-+ .+... +..+
T Consensus 20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~ 96 (906)
T PRK14720 20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQN 96 (906)
T ss_pred hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccc
Confidence 334456667666 99999999999999999886543 32 22233333355566666655555 33222 1122
Q ss_pred H-------------------hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 76 A-------------------YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 76 ~-------------------~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
. ..+-.+-.||-+.|..+++.++|+++.+.. +-|....|.+...|+.. ++++|.+++..
T Consensus 97 ~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 97 LKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 2 345556677777899999999999999866 45778889999999988 99999888877
Q ss_pred cc
Q 045063 137 IE 138 (175)
Q Consensus 137 m~ 138 (175)
..
T Consensus 175 AV 176 (906)
T PRK14720 175 AI 176 (906)
T ss_pred HH
Confidence 54
No 110
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0047 Score=38.87 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=45.8
Q ss_pred hhhcCCCChhHHHHHhhhccC--CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC--CCHhhHHHHHHHHhcC
Q 045063 18 IADALPKRYVYTHQVFDEISH--GD----LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN--LTAYTFTPVLGACSAL 89 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~--~~~~t~~~ll~~~~~~ 89 (175)
..+.+.|+++.|.+.|+++.. |+ ...+..+..++.+.|+++.|.+.|++....... ....++..+-.++.+.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 89 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL 89 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh
Confidence 344555666666666665532 21 123444555666666666666666665443111 1123444445555556
Q ss_pred CCchhHHHHHHHHHHh
Q 045063 90 PAPERGKQVHALMIKG 105 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~ 105 (175)
++.++|...+.+..+.
T Consensus 90 ~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 90 GDKEKAKATLQQVIKR 105 (119)
T ss_pred CChHHHHHHHHHHHHH
Confidence 6666666666666554
No 111
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.43 E-value=0.0017 Score=47.64 Aligned_cols=111 Identities=9% Similarity=0.139 Sum_probs=88.3
Q ss_pred HHHHHhhhcc--CCCchhHHHHHHHHHhC-----CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC----------
Q 045063 28 YTHQVFDEIS--HGDLSSLNSQLFSYTRS-----RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP---------- 90 (175)
Q Consensus 28 ~a~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~---------- 90 (175)
..++.|...+ ++|..+|-..+..|... +.++=....++.|++-|+.-|..+|+.|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4566777776 57888999999888764 566777778889999999999999999999997764
Q ss_pred ------CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH-HHHHHHHhcc
Q 045063 91 ------APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG-ESVEAFKEIE 138 (175)
Q Consensus 91 ------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~ 138 (175)
.-+-+..++++|...|+-||-.+-..|+++|++-+..- +..++.-=|+
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 23467899999999999999999999999999987643 3444443343
No 112
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.39 E-value=0.015 Score=44.12 Aligned_cols=151 Identities=11% Similarity=0.023 Sum_probs=95.1
Q ss_pred hhhhcCCCChhHHHHHhhhccC---CCchhH---HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHH---HHHHHh
Q 045063 17 SIADALPKRYVYTHQVFDEISH---GDLSSL---NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTP---VLGACS 87 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~---~~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~---ll~~~~ 87 (175)
-..+...|+.+.+.+.+....+ ++...+ ..-...+...|++++|.+.+++..+. .+-+...+.. ......
T Consensus 13 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~~~~~~~ 91 (355)
T cd05804 13 ALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD-YPRDLLALKLHLGAFGLGD 91 (355)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHhHHHHHhcc
Confidence 3444455677776666665432 222222 22233456789999999999998765 2223334332 111112
Q ss_pred cCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHH
Q 045063 88 ALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
..+....+.+.+.. .....|+ ......+...+...|++++|.+.++...+ | +...+..+-..|...|++++|..
T Consensus 92 ~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 92 FSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred cccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 24455555555544 1122333 33455666788999999999999999863 3 56678888889999999999999
Q ss_pred HHHHHHh
Q 045063 164 VFQAMTR 170 (175)
Q Consensus 164 ~~~~m~~ 170 (175)
.+++..+
T Consensus 170 ~l~~~l~ 176 (355)
T cd05804 170 FMESWRD 176 (355)
T ss_pred HHHhhhh
Confidence 9988765
No 113
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.38 E-value=0.0058 Score=46.08 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=91.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
.|.-+...|+...|.++-.+..-|+...|-..|.++++.|++++-.++-.. +-+..=|-.++.+|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 566667788888999998888889999999999999999998877765432 22347788889999999998888
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhc
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRH 155 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 155 (175)
..+... ..+..-+..|.++|++.+|.+.--+ .+|.....-+.+.+...
T Consensus 257 ~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~--~kd~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 257 SKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFK--EKDIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHH--cCCHHHHHHHHHHCCCC
Confidence 887665 2226678889999999998666443 45666666655544333
No 114
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.37 E-value=0.0034 Score=40.75 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYM 67 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m 67 (175)
..++.++|.++++.|+.+...++.+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 345666777777777776666666544
No 115
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.0059 Score=44.34 Aligned_cols=120 Identities=16% Similarity=0.099 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 122 (175)
.-..-...|++.|++++|++..+.. ..... ...=+.++.+..+++.|++.+..|.+- -+..|.+.|..++.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv 180 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLG----ENLEA--AALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWV 180 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhcc----chHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHH
Confidence 3344456788999999999998872 22233 333345567788899999999999762 24556776777665
Q ss_pred h----cCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 123 K----YGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 123 ~----~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
+ .+.+.+|.-+|++|.++ +..+-|-+..++...|++++|..++++...+
T Consensus 181 ~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 181 KLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4 56789999999999975 5555666677888999999999999998754
No 116
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.34 E-value=0.0094 Score=38.33 Aligned_cols=103 Identities=8% Similarity=0.024 Sum_probs=71.1
Q ss_pred HHHHhCCCcchHHHHHHHHHhcCCCCCH--hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc----hHHHHHHHHHHH
Q 045063 49 FSYTRSRNFPATWALFCYMHSTCLNLTA--YTFTPVLGACSALPAPERGKQVHALMIKGGTDSE----PVVKTALMDMYS 122 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~ 122 (175)
.++-..|+.++|..+|.+-...|+.... ..+..+-..+...|++++|..+++...... |+ ......+.-++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 3455678888888888888888776553 256666677778888888888888877642 32 223333445667
Q ss_pred hcCChHHHHHHHHhccCCCchhHHHHHHHHH
Q 045063 123 KYGLLGESVEAFKEIEFKDVVTWNALLSSFL 153 (175)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~ 153 (175)
..|+.++|.+.+-....+++..|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877666666666666666554
No 117
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.32 E-value=0.0073 Score=46.31 Aligned_cols=85 Identities=11% Similarity=-0.109 Sum_probs=41.9
Q ss_pred HhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHH
Q 045063 52 TRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESV 131 (175)
Q Consensus 52 ~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 131 (175)
...|++++|++.|.+..+... -+...|..+-.++.+.|++++|...+++.++.. +.+...|..+-.+|...|++++|.
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344555555555555543311 123344444455555555555555555555432 123334555555555555555555
Q ss_pred HHHHhcc
Q 045063 132 EAFKEIE 138 (175)
Q Consensus 132 ~~~~~m~ 138 (175)
..|+...
T Consensus 91 ~~~~~al 97 (356)
T PLN03088 91 AALEKGA 97 (356)
T ss_pred HHHHHHH
Confidence 5555543
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.024 Score=41.05 Aligned_cols=151 Identities=9% Similarity=0.028 Sum_probs=102.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHH---HHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQ---LFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+..+-...|+.+.|..+++++...=..++... -.-+-..|++++|.+.|+...+.. +.|.+++--=+...-..|+.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 66677788899999999998764212221111 112334688999999999998876 45556776666666666766
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcC---ChHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHG---LAKEAFGVFQ 166 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g---~~~~a~~~~~ 166 (175)
-+|.+.+....+. +..|...|.-+.+.|...|++++|.-.++++. .| +...+..+-..+.-.| +...+.++|.
T Consensus 137 l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 137 LEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6666666655553 67899999999999999999999999999987 55 4444444444443333 4445555555
Q ss_pred HH
Q 045063 167 AM 168 (175)
Q Consensus 167 ~m 168 (175)
+-
T Consensus 216 ~a 217 (289)
T KOG3060|consen 216 RA 217 (289)
T ss_pred HH
Confidence 43
No 119
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.24 E-value=0.0019 Score=36.72 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=33.0
Q ss_pred cCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 88 ALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+.|++++|.++++...+.. +-+...+-.+..+|.+.|++++|.++++.+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777777777776643 2255566667777777777777777777766
No 120
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.23 E-value=0.0074 Score=48.92 Aligned_cols=141 Identities=9% Similarity=0.022 Sum_probs=92.2
Q ss_pred CcchhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCCHhhHHHHHHH
Q 045063 12 AKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLTAYTFTPVLGA 85 (175)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~~~t~~~ll~~ 85 (175)
.|...+.....-+-++.+..+++.-.+-+...-+-.|..+++.+++++|-+.+.....+ ..+.+..-|.-+-+-
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 34445555555566666777777665555555777888888888888888888887644 233444577777777
Q ss_pred HhcCCCchh---HHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhccCC--CchhHHHHHHHHHh
Q 045063 86 CSALPAPER---GKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIEFK--DVVTWNALLSSFLR 154 (175)
Q Consensus 86 ~~~~~~~~~---a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~li~~~~~ 154 (175)
.+++.+.-. ..+++..+.. .-+|. ..|++|.+.|.+.|++|+|..++++-... .+.-|+.+.++|++
T Consensus 220 is~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 220 ISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 777655433 3444444443 24554 48999999999999999999999986543 33334444444443
No 121
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.21 E-value=0.016 Score=48.43 Aligned_cols=154 Identities=10% Similarity=0.121 Sum_probs=96.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc--------------------
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCYMHST-------------------- 70 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-------------------- 70 (175)
++..|...++.+.|.+.++.... -+...+|+++..|.+...++.|.....++.+.
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 45556666666777777776543 24555778888888887788887777777661
Q ss_pred -------CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--CcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-
Q 045063 71 -------CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGT--DSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK- 140 (175)
Q Consensus 71 -------~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 140 (175)
++.++... .-++-|+.+....+....+.+.+.+..+ .-+...|.-+.++|.+.|++.+|..+|..+...
T Consensus 366 ~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~ 444 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE 444 (895)
T ss_pred ccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 11122222 2233444555566666666666666553 334457777777777777777777777776522
Q ss_pred ---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 141 ---DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 141 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+...|--+-.+|-..|..+.|.+.|+....
T Consensus 445 ~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 445 GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 455676677777777777777776666543
No 122
>PLN02789 farnesyltranstransferase
Probab=97.20 E-value=0.032 Score=42.20 Aligned_cols=131 Identities=5% Similarity=-0.032 Sum_probs=59.6
Q ss_pred hcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc--h
Q 045063 20 DALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP--E 93 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~--~ 93 (175)
+...++.+.|..+.+++.+ | +..+|+.--.++.+.| +++++++.++++.+... -+..+|+.--..+.+.+.. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 3344455555555555432 2 3333444434444444 34556665555544322 1222344333333333331 3
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSF 152 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~ 152 (175)
++..+.+.+.+.. +-|...|+..--.+.+.|+++++.+.++.+.+ .|...|+.....+
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 4444554554432 23445555555555555556666665555542 2444455444333
No 123
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.19 E-value=0.027 Score=45.84 Aligned_cols=158 Identities=13% Similarity=0.129 Sum_probs=104.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHH-------hCCCcchHHHHHHHHHhcC-----------CCC---
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYT-------RSRNFPATWALFCYMHSTC-----------LNL--- 74 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~-------~~g~~~~a~~l~~~m~~~~-----------~~~--- 74 (175)
+-..|-+.|+++.|+.+|++..+-+-.+-+-|-..+| +..+++.|+++..+..... .++
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 7788899999999999999987755444444444444 4556777777776654321 111
Q ss_pred ---CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCCc-hhHH
Q 045063 75 ---TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKDV-VTWN 146 (175)
Q Consensus 75 ---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~-~~~~ 146 (175)
+...|...++---..|-++..+++++.++...+...... -...-.+-...-+++++++++.-. -|++ ..||
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii-~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQII-INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence 122344445555566788889999999987666433332 223333456777899999998754 2343 4788
Q ss_pred HHHHHHHh---cCChHHHHHHHHHHHhcccCC
Q 045063 147 ALLSSFLR---HGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 147 ~li~~~~~---~g~~~~a~~~~~~m~~~g~~p 175 (175)
+.+.-+.+ .-..+.|..+|++..+ |+.|
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 88776663 2368899999999887 6655
No 124
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.0034 Score=52.72 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=109.8
Q ss_pred CChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063 24 KRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHA 100 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~ 100 (175)
+..+.|.++|.+... .|...=|=+--+++..|++.+|.++|.+.++... -...+|..+-++|...|.+..|.+.|+
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 456778888887643 3666667777788899999999999999988743 344578899999999999999999999
Q ss_pred HHHHh-CCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC--CchhHHHHHHHH------------------HhcCC
Q 045063 101 LMIKG-GTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK--DVVTWNALLSSF------------------LRHGL 157 (175)
Q Consensus 101 ~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~--~~~~~~~li~~~------------------~~~g~ 157 (175)
...+. .-..+..+.+.|..++-+.|.+.+|.+...... .| .++.||..+... ...+.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~ 784 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE 784 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 98865 335567788999999999999999877665543 22 445566544321 12245
Q ss_pred hHHHHHHHHHHHhcc
Q 045063 158 AKEAFGVFQAMTRER 172 (175)
Q Consensus 158 ~~~a~~~~~~m~~~g 172 (175)
.+.|.++|.+|...+
T Consensus 785 le~a~r~F~~ls~~~ 799 (1018)
T KOG2002|consen 785 LEEARRLFTELSKNG 799 (1018)
T ss_pred HHHHHHHHHHHHhcC
Confidence 777888888886543
No 125
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.012 Score=46.25 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=92.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~ 91 (175)
+-.+|....+.++.++.|+.... .+..+|-.=-..+.-.+++++|..=|++-++. .|.. ..|.-+--+..+.+.
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k 443 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHK 443 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHH
Confidence 55677777888888888877643 24444443334444445566666666665332 2222 133333333345667
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---------------------------------
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--------------------------------- 138 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------------------------------- 138 (175)
+++++..|++.+++ ++.....|+-....+...+++++|.+.|+...
T Consensus 444 ~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a 522 (606)
T KOG0547|consen 444 IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQA 522 (606)
T ss_pred HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHH
Confidence 77777777777664 55556677777777777777777777776643
Q ss_pred --------CCC---chhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 139 --------FKD---VVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 139 --------~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+-| ...|..|-..-.+.|++++|+++|++-
T Consensus 523 ~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 523 ENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111 234666666677788888888888763
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.18 E-value=0.0067 Score=46.53 Aligned_cols=87 Identities=7% Similarity=-0.107 Sum_probs=73.7
Q ss_pred HHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHH
Q 045063 84 GACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKE 160 (175)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~ 160 (175)
..+...|++++|...+.+.++.. +-+...|..+..+|.+.|++++|...++...+ | +...|..+-.+|.+.|+++.
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45567899999999999999854 34567889999999999999999999999863 3 56678888889999999999
Q ss_pred HHHHHHHHHhc
Q 045063 161 AFGVFQAMTRE 171 (175)
Q Consensus 161 a~~~~~~m~~~ 171 (175)
|...|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 127
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.17 E-value=0.018 Score=39.27 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc--hHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHH
Q 045063 77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSE--PVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSS 151 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~ 151 (175)
..+..+-..+...|++++|...+++..+....+. ...+..+...|.+.|++++|...++.... | +...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3677777788889999999999999986543332 46889999999999999999999998763 3 55567777777
Q ss_pred HHhcCC
Q 045063 152 FLRHGL 157 (175)
Q Consensus 152 ~~~~g~ 157 (175)
+...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 777776
No 128
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.016 Score=44.77 Aligned_cols=148 Identities=14% Similarity=0.102 Sum_probs=115.0
Q ss_pred hcCCCChhHHHHHhhhcc--CC-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHH-HHHH-hcCCCchh
Q 045063 20 DALPKRYVYTHQVFDEIS--HG-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPV-LGAC-SALPAPER 94 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~l-l~~~-~~~~~~~~ 94 (175)
+...++++.|.=.|+... .| +...|.=|+.+|...|++++|..+-.+..+. +.-+..+.+.+ -..| .....-++
T Consensus 344 L~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 446788888988888764 34 8889999999999999999999887775444 44456666666 2333 34445688
Q ss_pred HHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 95 GKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
|..+++.-.+ +.|+ ....+.+...+...|..+++..+++.-. .+|....+.|-+.++..+...+|.+.|..-.+
T Consensus 423 AKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 423 AKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8888887654 4565 4577888899999999999999998865 67999999999999999999999888876543
No 129
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.0031 Score=41.81 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh-----cccCC
Q 045063 112 VVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR-----ERVEF 175 (175)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p 175 (175)
.....++..+...|++++|.+..+... .| |...|-.+|.+|.+.|+...|.+.|+++.+ -|+.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~P 134 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEP 134 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCc
Confidence 466778888889999999999998887 44 677899999999999999999999888743 37766
No 130
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.09 E-value=0.015 Score=39.53 Aligned_cols=111 Identities=11% Similarity=-0.022 Sum_probs=77.3
Q ss_pred cchHHHHHHHHH-hcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCc--chHHHHHHHHHHHhcCChHHHHHH
Q 045063 57 FPATWALFCYMH-STCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDS--EPVVKTALMDMYSKYGLLGESVEA 133 (175)
Q Consensus 57 ~~~a~~l~~~m~-~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~ 133 (175)
+..+.+.+..+. ..+..-....|..+...+...|++++|...+.........+ ...+|..+-..|...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555553 23333334567777788888999999999999987643222 234889999999999999999999
Q ss_pred HHhccC--C-CchhHHHHHHHHH-------hcCChHHHHHHHHH
Q 045063 134 FKEIEF--K-DVVTWNALLSSFL-------RHGLAKEAFGVFQA 167 (175)
Q Consensus 134 ~~~m~~--~-~~~~~~~li~~~~-------~~g~~~~a~~~~~~ 167 (175)
++.... | ....++.+...+. +.|+++.|...+++
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 998763 2 3445666666666 78888766655544
No 131
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.013 Score=46.68 Aligned_cols=156 Identities=11% Similarity=0.044 Sum_probs=102.0
Q ss_pred CcchhhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHH----------------------------------HHHhC
Q 045063 12 AKTCISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLF----------------------------------SYTRS 54 (175)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~----------------------------------~~~~~ 54 (175)
||-++=--|.-.|+.++|++.|.+...-| ...|-.+-. -|.+.
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh
Confidence 34444444555588888888888764311 112333333 34445
Q ss_pred CCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHh--CCC---c-chHHHHHHHHHHHhcCCh
Q 045063 55 RNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKG--GTD---S-EPVVKTALMDMYSKYGLL 127 (175)
Q Consensus 55 g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~---~-~~~~~~~li~~~~~~g~~ 127 (175)
++++.|.+.|.+.. ++-|+. ...+-+--...+.+.+.+|..+|+..... .+. + -..+++.|-++|.+.+.+
T Consensus 394 ~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 55556665555542 333433 34444444455667788888888877722 111 1 223688888999999999
Q ss_pred HHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 128 GESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 128 ~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++|...++.-. ..|..++.++--.|...|+++.|.+.|.+-.
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999998865 4588899999999999999999999887743
No 132
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.03 E-value=0.0067 Score=49.61 Aligned_cols=156 Identities=11% Similarity=0.056 Sum_probs=106.8
Q ss_pred cchhhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHH-Hhc----CCC------------
Q 045063 13 KTCISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYM-HST----CLN------------ 73 (175)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m-~~~----~~~------------ 73 (175)
|..+|.+|+..|+...|..+..+..+ |+...|..+........-++.|++++++- .+. |..
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADK 506 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHH
Confidence 33478888888888888888877643 56666777666655555555666665552 110 111
Q ss_pred ----------CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccCCC-
Q 045063 74 ----------LTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEFKD- 141 (175)
Q Consensus 74 ----------~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~- 141 (175)
....+|-..-.+..+.++++.+-+.|..... ..||- ..||++-.+|.+.|+-.+|...+.+-.+-|
T Consensus 507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 1222343444444566678888888877765 45654 589999999999999999999999877554
Q ss_pred --chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 142 --VVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 142 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
-..|.-.+-.-...|.++.|.+.+.+|..
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 44566667777899999999999888764
No 133
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.02 E-value=0.003 Score=35.61 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=31.3
Q ss_pred HHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 119 DMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+.+.|++++|.+.|+...+. +...|..+-.++.+.|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556666666666666666532 344555666666666666666666666544
No 134
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.99 E-value=0.006 Score=39.60 Aligned_cols=78 Identities=9% Similarity=0.005 Sum_probs=53.6
Q ss_pred chhhhhhcCCCChhHHHHHhhhcc-------------------CCCchhHHHHHHHHHhCCCcchHHHHHHHHHh-cCCC
Q 045063 14 TCISIADALPKRYVYTHQVFDEIS-------------------HGDLSSLNSQLFSYTRSRNFPATWALFCYMHS-TCLN 73 (175)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~f~~~~-------------------~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~ 73 (175)
..+|.++++.|+++...++.+..= .|+..+-.+++.+|+.+|++..|+++.+...+ -+++
T Consensus 6 ~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~ 85 (126)
T PF12921_consen 6 CNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP 85 (126)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC
Confidence 458899999999999999987541 13455566677777777777777777777543 3666
Q ss_pred CCHhhHHHHHHHHhcCCC
Q 045063 74 LTAYTFTPVLGACSALPA 91 (175)
Q Consensus 74 ~~~~t~~~ll~~~~~~~~ 91 (175)
.+...|..|++.+....+
T Consensus 86 i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 86 IPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 666677777766654443
No 135
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.97 E-value=0.045 Score=44.81 Aligned_cols=151 Identities=9% Similarity=-0.028 Sum_probs=111.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~ 92 (175)
-+..-..+.+++.|+.+|.+... +....|-.-+..-.-.+..++|++++++-++. + |+- .-|..+-..+-+.+++
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f-p~f~Kl~lmlGQi~e~~~~i 701 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-F-PDFHKLWLMLGQIEEQMENI 701 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C-CchHHHHHHHhHHHHHHHHH
Confidence 45556677778888888877653 45556655555555667788888888776554 3 443 3677777777778888
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+.|+..|..=.+. ++..+..|-.|...--+.|.+-+|..+++.-. .| |...|-..|+.=.|.|+.+.|..++-+-.
T Consensus 702 e~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 702 EMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888777654432 45556789999888889999999999999866 33 77889999999999999999987765543
No 136
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.94 E-value=0.058 Score=43.11 Aligned_cols=141 Identities=8% Similarity=-0.007 Sum_probs=94.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHH-HHhcCCCCCHhhHHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCY-MHSTCLNLTAYTFTPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~-m~~~~~~~~~~t~~~ll~~~~~~ 89 (175)
.++.--|..-+..|+.+|.+..+ .++..++++|.-||.. |.+-|.++|+- |++-|-.| .--..-++.++..
T Consensus 372 ~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~l 448 (656)
T KOG1914|consen 372 YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHL 448 (656)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHh
Confidence 66666677778888888888764 2666778888888764 66888888876 44443222 2233446666777
Q ss_pred CCchhHHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhcc-------CCCchhHHHHHHHHHhcCChH
Q 045063 90 PAPERGKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIE-------FKDVVTWNALLSSFLRHGLAK 159 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~ 159 (175)
++-..++.+|+.....++.||. .+|..+|+.-...|++..+.++-+++. ++....-..+++-|.-.+...
T Consensus 449 Ndd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 449 NDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred CcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 8888888888888877666654 588888888888888888777766654 222234445555555444433
No 137
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.0027 Score=36.05 Aligned_cols=51 Identities=4% Similarity=-0.043 Sum_probs=27.3
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
+.|++++|.+.|++...... -+...+..+..++.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666544311 1344445555666666666666666665554
No 138
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.93 E-value=0.045 Score=43.19 Aligned_cols=148 Identities=10% Similarity=0.085 Sum_probs=120.8
Q ss_pred cCCCChhHHHHHhhhccC---CCchhHHHHHHHHH----hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 21 ALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYT----RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~----~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
....+++.++++|....+ ....||..+--.|+ +..++..|.+++-.. -|.-|...+|.--+..=.+.+.++
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHH
Confidence 356788888888876543 46677777766665 457888999888776 477788989999998889999999
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-CC----CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-FK----DVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
..+.+++..++-+ +-|..+|......-...|+.|.|..+|.... +| -...|-+.|.-=...|.+++|..+++.+
T Consensus 455 RcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 9999999999864 3477899999999999999999999999876 44 2456888888888999999999999998
Q ss_pred Hhc
Q 045063 169 TRE 171 (175)
Q Consensus 169 ~~~ 171 (175)
.+.
T Consensus 534 L~r 536 (677)
T KOG1915|consen 534 LDR 536 (677)
T ss_pred HHh
Confidence 765
No 139
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.93 E-value=0.016 Score=46.59 Aligned_cols=122 Identities=10% Similarity=0.054 Sum_probs=95.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+--.|...|+++.|.+.+++.-+ |. +..|-.--..+-+.|++.+|.+.++..++... .|...=+-....+.+.|+.
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCH
Confidence 45567799999999999998765 32 44578888999999999999999999866532 3445666677888999999
Q ss_pred hhHHHHHHHHHHhCCCcchH------HH--HHHHHHHHhcCChHHHHHHHHhcc
Q 045063 93 ERGKQVHALMIKGGTDSEPV------VK--TALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~------~~--~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
++|..++....+.+..|-.. .| ...-.+|.+.|++..|..-|..+.
T Consensus 279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999998776544332 23 566688999999999988777765
No 140
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.89 E-value=0.049 Score=42.78 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH-HHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM-DMY 121 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~ 121 (175)
....|-.-|-+-|+-..|++.+-+--+. ++-+..|.-=|-..|....-.+++...|+... -+.|++.-|-.+| +++
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHH
Confidence 3344444444444444444443332221 22222232222233333334456666666543 3799999998888 555
Q ss_pred HhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCC
Q 045063 122 SKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGL 157 (175)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~ 157 (175)
.+.|.+.+|+++++..-++ |+...--|++.+...|.
T Consensus 671 rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 6799999999999998743 78888888887777763
No 141
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.06 Score=46.23 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=89.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-------------------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-------------------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHST 70 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 70 (175)
+-......+-+++|..+|++... .....|+-+-.+=.+.|...+|.+-|-+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 55566677888888888887532 24556888888888888888888877654
Q ss_pred CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 71 CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 71 ~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
-|...|.-+++.+.+.|.+++....+....+..-.|.+. +.||-+|++.+++.+.++++..
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~g 1191 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAG 1191 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcC
Confidence 355689999999999999999999988887766555544 6899999999999998888764
No 142
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.85 E-value=0.0096 Score=49.26 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=62.4
Q ss_pred hhhcCCCChhHHHHHhhhccCCCchh--HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 18 IADALPKRYVYTHQVFDEISHGDLSS--LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
.+-.+...+..|..+++.++...+.+ |.-+-..|+..|+++-|.++|.+- .-|+-.+..|.+.|+++.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHH
Confidence 33444555566666666555443333 566666666677777777666552 1234455666667776666
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD 141 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 141 (175)
..+-.+. .|....+..|-+-..-.-+.|++.+|.+++-.+..||
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~ 854 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD 854 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch
Confidence 6654433 2233344455555555555666666666555555443
No 143
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.80 E-value=0.0096 Score=39.40 Aligned_cols=69 Identities=10% Similarity=0.055 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHH-----HhCCCcchHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMI-----KGGTDSEPVV 113 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~~~~~~ 113 (175)
...++..+...|++++|..+....... -+.+...|..+|.++...|+...|.+.|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555555677777777777777554 22455677777777777777777777777765 2377776654
No 144
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.79 E-value=0.16 Score=41.70 Aligned_cols=150 Identities=6% Similarity=-0.095 Sum_probs=72.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
--..|.+.+.++-|+.+|....+ .+...|.-....=-..|..++...+|.+.... .+-...-|....+-.-..|++
T Consensus 522 da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv 600 (913)
T KOG0495|consen 522 DAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDV 600 (913)
T ss_pred hHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCc
Confidence 33445555555555555555432 13344444444333445555555555555444 222333444444444455555
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
..|+.++.+..+.. +.+...|-+-+..-.....+|.|..+|.... .+....|.--+.----.++.++|.+++++
T Consensus 601 ~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 601 PAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 55555555555432 1234455555555555555555555555543 22334444433333344455555555444
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.76 E-value=0.16 Score=40.68 Aligned_cols=143 Identities=10% Similarity=0.083 Sum_probs=111.0
Q ss_pred hhHHHHHhhhcc----CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063 26 YVYTHQVFDEIS----HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALPAPERGKQVHA 100 (175)
Q Consensus 26 ~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~ 100 (175)
.+.....++++. ..-+.+|..+|+.--+..-++.|..+|.+.++.+..+ .....+++|..+|. ++.+.|..+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 344444555443 2356789999999889888999999999999998888 55688889988774 67788999988
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 101 LMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK------DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 101 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.=.+. ..-+..--...++.+...++-..+..+|+..... ...+|..+|.-=..-|++..+.++-+++..
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 65443 2233444578889999999999999999998744 346899999988899999999988777643
No 146
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.018 Score=45.89 Aligned_cols=138 Identities=12% Similarity=0.087 Sum_probs=109.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc-----CCCC-CHhhHHHHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHST-----CLNL-TAYTFTPVLGAC 86 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~~~~-~~~t~~~ll~~~ 86 (175)
+=-=|.+.++...|.+.|.+... .|....+-+--...+.+.+.+|...|..-+.. .-++ -..+++.|-.++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 44456778899999999988643 37777887777777888999999999987621 1111 234788999999
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHh
Q 045063 87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLR 154 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~ 154 (175)
.+.+..++|...+++-... .+.|..+++++--.|...|.++.|.+.|..-. +||-.+-..++..+..
T Consensus 466 Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9999999999999998875 46788999999999999999999999999865 7777666666665443
No 147
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.71 E-value=0.008 Score=49.19 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=99.4
Q ss_pred CCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHH
Q 045063 23 PKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQV 98 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~ 98 (175)
.++++++.+.|+.--+ | ...+|-..-.+..+.++++.|.+.|..-.. ..||.. .||.+-.++.+.+.-.+|...
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 4555555555554221 1 445566666677788899999999988643 456654 999999999999999999999
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-----CCCchhHHHHHHHHHh
Q 045063 99 HALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-----FKDVVTWNALLSSFLR 154 (175)
Q Consensus 99 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~ 154 (175)
+.+..+.. .-+...|-+.+....+.|.+++|.+.+.++. ..|..+-..++..-.+
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 99999987 6788899999999999999999999999986 2366666666665443
No 148
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.70 E-value=0.055 Score=46.21 Aligned_cols=61 Identities=7% Similarity=-0.050 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
..+-.+-.||-+.|+.++|.++|++..+.. +-|....|.+-..++.. ++++|.+++.+...
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 445556666767777777777777776654 33444666666666655 66666666555543
No 149
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.67 E-value=0.007 Score=35.42 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccC---------CC-chhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 113 VKTALMDMYSKYGLLGESVEAFKEIEF---------KD-VVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~---------~~-~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+++.+-..|.+.|++++|.+.|++..+ ++ ..+++.+-.+|...|++++|.+.+++-
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556666666666666666666665431 11 335666666666777777776666654
No 150
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.62 E-value=0.087 Score=40.19 Aligned_cols=84 Identities=8% Similarity=-0.006 Sum_probs=43.9
Q ss_pred HHhcCCCchhHHHHHHHHHHhCCCcchHHH-HHHHHHHHhcCChHHHHHHHHhccCC-CchhHHHH-HHHHHhcCChHHH
Q 045063 85 ACSALPAPERGKQVHALMIKGGTDSEPVVK-TALMDMYSKYGLLGESVEAFKEIEFK-DVVTWNAL-LSSFLRHGLAKEA 161 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~l-i~~~~~~g~~~~a 161 (175)
+.+..|...+|+++|-+.....++ |..+| ..|..+|.++|+.+-|+.++-.+..| +..+.-.+ -.-|.+.+.+=-|
T Consensus 402 Ak~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyya 480 (557)
T KOG3785|consen 402 AKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYA 480 (557)
T ss_pred HHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666555433332 33444 33446667777777777766666554 22222222 2345556655555
Q ss_pred HHHHHHHH
Q 045063 162 FGVFQAMT 169 (175)
Q Consensus 162 ~~~~~~m~ 169 (175)
.+.|.++.
T Consensus 481 aKAFd~lE 488 (557)
T KOG3785|consen 481 AKAFDELE 488 (557)
T ss_pred HHhhhHHH
Confidence 55555544
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.61 E-value=0.0077 Score=33.87 Aligned_cols=54 Identities=4% Similarity=-0.118 Sum_probs=24.6
Q ss_pred HHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 50 SYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 50 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
.+.+.|++++|.+.|++.++.. +-+...+..+-.++.+.|++++|...+++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555554442 11223444444444555555555555554443
No 152
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.037 Score=44.50 Aligned_cols=126 Identities=8% Similarity=0.028 Sum_probs=55.3
Q ss_pred hhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhH-HHHHHHHhcCCCc
Q 045063 17 SIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTF-TPVLGACSALPAP 92 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~-~~ll~~~~~~~~~ 92 (175)
|+.+.+.|++++|.+...++.. .|...+-+=+.+..+.+.+++|+.+.+.- +..-....| --=.-|..+.+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKN---GALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---chhhhcchhhHHHHHHHHHcccH
Confidence 4445555555555555555432 23444555555555555555555333221 100000111 0111222345555
Q ss_pred hhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS 150 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~ 150 (175)
++|...+. |+.++. .+...-...+-+.|++++|..+++.+.+.+...+..-+.
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r 149 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERR 149 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 55555544 222222 233333444555555555555555555544444444333
No 153
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.008 Score=50.61 Aligned_cols=112 Identities=9% Similarity=0.030 Sum_probs=90.0
Q ss_pred CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063 56 NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 56 ~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 135 (175)
..+.|+++|.+.++. -+-|...-|-+--+++..|.+.+|..+|.+..+.. .-...+|-.+.++|...|++..|.++|+
T Consensus 627 ~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 456788888877655 23455566666677889999999999999998864 3467799999999999999999999999
Q ss_pred hccC-----CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 136 EIEF-----KDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 136 ~m~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
...+ .++.+-+.|-+++.+.|++.+|.+.+..-.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9763 267788899999999999999988765543
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.52 E-value=0.019 Score=38.58 Aligned_cols=86 Identities=12% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063 49 FSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL 127 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 127 (175)
.-+...|++++|.++|.-.... .|... -|-.|--++-..|++++|...|....... +-|...+-.+-.+|...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 3344555555555555554222 22222 33333344444555555555555555433 13344444555555555555
Q ss_pred HHHHHHHHhc
Q 045063 128 GESVEAFKEI 137 (175)
Q Consensus 128 ~~a~~~~~~m 137 (175)
+.|.+.|+..
T Consensus 120 ~~A~~aF~~A 129 (157)
T PRK15363 120 CYAIKALKAV 129 (157)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.49 E-value=0.066 Score=34.43 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=64.2
Q ss_pred HHhcCCCchhHHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhccC--CC----chhHHHHHHHHHhcC
Q 045063 85 ACSALPAPERGKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIEF--KD----VVTWNALLSSFLRHG 156 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~li~~~~~~g 156 (175)
++-..|+.++|..+|++-...|..... ..+-.+-..|...|++++|..+++.... |+ ......+--++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 345679999999999999998876553 3666777899999999999999998763 43 122222334667889
Q ss_pred ChHHHHHHHHHHH
Q 045063 157 LAKEAFGVFQAMT 169 (175)
Q Consensus 157 ~~~~a~~~~~~m~ 169 (175)
+.++|.+.+-+..
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999876543
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.46 E-value=0.016 Score=32.96 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 045063 112 VVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHG-LAKEAFGVFQAMT 169 (175)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 169 (175)
..|..+-..+...|++++|...|++.. .| +...|..+-.+|.+.| ++++|.+.+++-.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 345555555555556666555555544 22 3344555555555555 4555555555543
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.41 E-value=0.082 Score=35.58 Aligned_cols=86 Identities=12% Similarity=-0.050 Sum_probs=71.2
Q ss_pred HHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHH
Q 045063 84 GACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKE 160 (175)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~ 160 (175)
.-+...|++++|..+|+.+..-. +-+..-|-.|--++-..|++++|...+.... .| |...+-.+-.++...|+.+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 34568899999999999998743 2345577888899999999999999999865 34 67788888899999999999
Q ss_pred HHHHHHHHHh
Q 045063 161 AFGVFQAMTR 170 (175)
Q Consensus 161 a~~~~~~m~~ 170 (175)
|.+.|+.-++
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 158
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.23 Score=36.12 Aligned_cols=144 Identities=10% Similarity=0.073 Sum_probs=103.9
Q ss_pred cCCCChhHHHHHhhhccC--------CC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh----hHHHHHHHHh
Q 045063 21 ALPKRYVYTHQVFDEISH--------GD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY----TFTPVLGACS 87 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~--------~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~----t~~~ll~~~~ 87 (175)
....+.+++.+++.++.. ++ ...|.-++-+-.-.|+...|...+++....- |.+. ....++ -
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~l---E 97 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLL---E 97 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHH---H
Confidence 345778888888888753 11 2235555556666789999999999987763 4432 223333 3
Q ss_pred cCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHH
Q 045063 88 ALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
..|..++|.++++.+.+.. +.|..++--=+...-..|+--+|.+-+..-.+ .|...|.-+-.-|...|++++|.-.
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 4678999999999999876 56777776666666666666666655554442 3889999999999999999999999
Q ss_pred HHHHHh
Q 045063 165 FQAMTR 170 (175)
Q Consensus 165 ~~~m~~ 170 (175)
++||.-
T Consensus 177 lEE~ll 182 (289)
T KOG3060|consen 177 LEELLL 182 (289)
T ss_pred HHHHHH
Confidence 999864
No 159
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.086 Score=42.49 Aligned_cols=141 Identities=8% Similarity=0.028 Sum_probs=72.5
Q ss_pred hhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHH--hCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCch
Q 045063 17 SIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYT--RSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPE 93 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~--~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~ 93 (175)
+.+..+.+++++|.++.+.-...++...-.+=.+|| +.+..++|+..++ |..++.. +.-.=-..|.+.++++
T Consensus 53 vValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~yd 127 (652)
T KOG2376|consen 53 VVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYD 127 (652)
T ss_pred HhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHH
Confidence 345556777777776665443211111111233444 5677777777776 3333333 4444455667778888
Q ss_pred hHHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHH---HHHhcCChHHHHHHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS---SFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~---~~~~~g~~~~a~~~~~~m 168 (175)
+|..+|+.+.+.+. ++. ..-..++.+-.. -.+. +.+..+.-...+|..+.+ .+...|++..|+++++.-
T Consensus 128 ealdiY~~L~kn~~-dd~d~~~r~nl~a~~a~----l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 128 EALDIYQHLAKNNS-DDQDEERRANLLAVAAA----LQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHHHHHHHhcCC-chHHHHHHHHHHHHHHh----hhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 88888888866543 222 222233322111 0111 233333323334444433 244667888888777665
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.36 E-value=0.25 Score=39.98 Aligned_cols=130 Identities=8% Similarity=-0.095 Sum_probs=83.1
Q ss_pred CCchhHHHHHHHHHhCC-----CcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcC---C-----CchhHHHHHHHHHH
Q 045063 39 GDLSSLNSQLFSYTRSR-----NFPATWALFCYMHSTCLNLTAY-TFTPVLGACSAL---P-----APERGKQVHALMIK 104 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~---~-----~~~~a~~~~~~m~~ 104 (175)
.+...|...+.+..... +.+.|.++|++..+. .|+.. .+..+..++... . ....+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 46778999998866533 366888898888554 35532 333322222111 1 11222233232222
Q ss_pred h-CCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 105 G-GTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 105 ~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
. ....+...|.++.-.+...|++++|...+++.. .|+...|..+-..+...|+.++|.+.+++-.+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 123345677777666677899999999999876 56767788888889999999999999887554
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.29 E-value=0.021 Score=32.77 Aligned_cols=54 Identities=11% Similarity=0.035 Sum_probs=33.6
Q ss_pred HHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 84 GACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
..+.+.++++.|.+.++.+.+.+ +.+...|...-.+|.+.|++++|.+.|+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34556666677777766666642 2344566666666666777777766666654
No 162
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.27 E-value=0.14 Score=37.70 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=69.8
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch----HHHHHHHHHHHhcCChHHHHHHHHhccC--CC----chhHHH
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEP----VVKTALMDMYSKYGLLGESVEAFKEIEF--KD----VVTWNA 147 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~----~~~~~~ 147 (175)
.|...+.-..+.|++++|...|+.+++.- |+. ..+-.+-..|...|++++|...|+.+.+ |+ ...+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 46665655566789999999999998753 443 4667788889999999999999999873 32 234444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 045063 148 LLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
+...+...|+.++|...|++..+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566677899999999999988764
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.23 E-value=0.093 Score=38.89 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=93.1
Q ss_pred hhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCCH--hhHHHHH
Q 045063 18 IADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST---CLNLTA--YTFTPVL 83 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~--~t~~~ll 83 (175)
..|-..++++.|...|.+... . -...|.....+|-+. ++++|.+.|.+..+. .-.|+. ..+.-+-
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA 121 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELA 121 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344444555555555554421 1 123356666666554 888888888876532 222333 3677777
Q ss_pred HHHhcC-CCchhHHHHHHHHHHh----CCCcc--hHHHHHHHHHHHhcCChHHHHHHHHhccCC----C-----ch-hHH
Q 045063 84 GACSAL-PAPERGKQVHALMIKG----GTDSE--PVVKTALMDMYSKYGLLGESVEAFKEIEFK----D-----VV-TWN 146 (175)
Q Consensus 84 ~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-----~~-~~~ 146 (175)
..+-+. |+++.|.+.|++..+. + .+. ...+..+...+.+.|++++|.++|++.... + .. .|-
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 778887 8999999999887742 3 222 346788889999999999999999987521 1 11 122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 045063 147 ALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+-++...||.-.|...|++...
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 234466778999999999988764
No 164
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.21 E-value=0.11 Score=35.75 Aligned_cols=97 Identities=8% Similarity=-0.002 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
..+..+...|++.|+.++|++.|.+++.....+... .+-.++..+.-.+++..+.....+....--.+......+-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 458889999999999999999999998886666654 788888999999999999988887774322222122222222
Q ss_pred HH-----HhcCChHHHHHHHHhcc
Q 045063 120 MY-----SKYGLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~-----~~~g~~~~a~~~~~~m~ 138 (175)
+| ...|++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 22 35789999888887765
No 165
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.092 Score=40.09 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=82.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHH-HHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVL-GACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll-~~~~~~~ 90 (175)
+.+.+--..++|++...+..+.. .|..-|| +-.+++..|...+|.++|-+...-.+ -|..+|.+++ .|+.+.+
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcC
Confidence 55555555666666666665553 2444444 56888889999999999988733322 4556776665 6667899
Q ss_pred CchhHHHHHHHHHHhCCCcchHHH-HHHHHHHHhcCChHHHHHHHHhcc--CCCchhH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVK-TALMDMYSKYGLLGESVEAFKEIE--FKDVVTW 145 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~ 145 (175)
.++.|+.++-.+ ..+.+..+. -.+.+-+-+++.+.-|-+.|+.+. +|++.-|
T Consensus 443 kP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW 497 (557)
T ss_pred CchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence 999987765543 333344444 344467778999999999998876 4444333
No 166
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.10 E-value=0.32 Score=41.90 Aligned_cols=153 Identities=5% Similarity=-0.102 Sum_probs=103.1
Q ss_pred hhhcCCCChhHHHHHhhhccC----CCc----hhHHHHHHHHHhCCCcchHHHHHHHHHhcCC---CCC--HhhHHHHHH
Q 045063 18 IADALPKRYVYTHQVFDEISH----GDL----SSLNSQLFSYTRSRNFPATWALFCYMHSTCL---NLT--AYTFTPVLG 84 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~----~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~---~~~--~~t~~~ll~ 84 (175)
..+...|+++.|...+++... .+. ...+.+-..+...|++++|...+.+.....- .+. ..+...+-.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 345678999999999887532 221 2346666777789999999999999864311 111 224455556
Q ss_pred HHhcCCCchhHHHHHHHHHHh----CCC--c-chHHHHHHHHHHHhcCChHHHHHHHHhccC------C--CchhHHHHH
Q 045063 85 ACSALPAPERGKQVHALMIKG----GTD--S-EPVVKTALMDMYSKYGLLGESVEAFKEIEF------K--DVVTWNALL 149 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~--~~~~~~~li 149 (175)
.+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++... + ....+..+-
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 678899999999998877642 211 1 223445556667788999999888887531 1 122344455
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 045063 150 SSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+...|+.+.|.+.+.+...
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 667789999999998887643
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.07 E-value=0.18 Score=38.17 Aligned_cols=79 Identities=9% Similarity=-0.044 Sum_probs=34.4
Q ss_pred HHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063 48 LFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL 127 (175)
Q Consensus 48 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 127 (175)
|.-+...|....|.++-.+. =.|+..=|-..+.++++.+++++.+.+... +-++.-|-.+++++.+.|..
T Consensus 184 i~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 33334444444444443333 113444444445555555555444443211 11224444555555555555
Q ss_pred HHHHHHHHh
Q 045063 128 GESVEAFKE 136 (175)
Q Consensus 128 ~~a~~~~~~ 136 (175)
.+|...+..
T Consensus 254 ~eA~~yI~k 262 (319)
T PF04840_consen 254 KEASKYIPK 262 (319)
T ss_pred HHHHHHHHh
Confidence 555544444
No 168
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.04 E-value=0.049 Score=40.21 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHh-----cccCC
Q 045063 112 VVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR-----ERVEF 175 (175)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p 175 (175)
.+++.++..+...|+++.+.+.+++... | |...|..++.+|.+.|+...|...|+++.. .|+.|
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence 3567788899999999999999998873 3 788999999999999999999999998855 47766
No 169
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.02 E-value=0.37 Score=34.97 Aligned_cols=151 Identities=9% Similarity=0.085 Sum_probs=95.2
Q ss_pred hhhhcCCCChhHHHHHhhhccC--CCchh----HHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHhhHHHHHHHHhc-
Q 045063 17 SIADALPKRYVYTHQVFDEISH--GDLSS----LNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAYTFTPVLGACSA- 88 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~--~~~~~----~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~~~~- 88 (175)
-..+...|+++.|.+.|+++.. |+... .-.+..++.+.+++++|...|++..+. .-.|+. -+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhh
Confidence 3444567999999999999864 33221 134557788999999999999998765 222332 33334444321
Q ss_pred ----------------CCCch---hHHHHHHHHHHhCCCcchH------H-----H-------HHHHHHHHhcCChHHHH
Q 045063 89 ----------------LPAPE---RGKQVHALMIKGGTDSEPV------V-----K-------TALMDMYSKYGLLGESV 131 (175)
Q Consensus 89 ----------------~~~~~---~a~~~~~~m~~~~~~~~~~------~-----~-------~~li~~~~~~g~~~~a~ 131 (175)
..+.. .|...++.+++. -|+.. . - -.+...|.+.|.+.-|.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 11223 455666666654 23311 1 0 12335578888888888
Q ss_pred HHHHhccCC------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 132 EAFKEIEFK------DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 132 ~~~~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.=|+.+.+. .......++.+|...|..++|......+..
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 888887743 233456788999999999999888766543
No 170
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.01 E-value=0.039 Score=45.88 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=71.4
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVE 132 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 132 (175)
....+..|+.+++....+.. -..-|..+-+.|+..|+++.|+++|.+- ..++--|+.|.+.|++++|.+
T Consensus 744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHH
Confidence 34566777777777654432 3446888899999999999999998642 356778999999999999999
Q ss_pred HHHhccCC--CchhHHHHHHHHHhcCChHHHHHH
Q 045063 133 AFKEIEFK--DVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 133 ~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
+-.+...| .++.|-+--.-.-..|++.+|.++
T Consensus 813 la~e~~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 813 LAEECHGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 99888766 334454444444455555555444
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.99 E-value=0.05 Score=30.80 Aligned_cols=60 Identities=10% Similarity=-0.061 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC-CchhHHHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP-APERGKQVHALMI 103 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~ 103 (175)
.|..+-..+.+.|++++|+..|++..+.. +-+...|..+-.++.+.| ++++|.+.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 44444445555555555555555543331 112224444444444444 3444444444443
No 172
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.14 Score=38.32 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=26.8
Q ss_pred CCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063 22 LPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL 72 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 72 (175)
+.|+++.|.+-|....+ .+...||.-+-.| +.|+...|++...+..++|+
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 55666666666655443 2444555555444 34455666666666555443
No 173
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.91 E-value=0.12 Score=41.47 Aligned_cols=140 Identities=12% Similarity=0.031 Sum_probs=103.1
Q ss_pred cCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchh
Q 045063 21 ALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPER 94 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~ 94 (175)
.....+..+.++|-++.. .|....+.|---|--.|+++.|.+-|+..+. ++|+.. .||-|-..++...+-++
T Consensus 405 ~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~E 482 (579)
T KOG1125|consen 405 LDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEE 482 (579)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHH
Confidence 344455566677766531 4667778888888888999999999998754 456654 89999999999999999
Q ss_pred HHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhcc---C----------CCchhHHHHHHHHHhcCChHH
Q 045063 95 GKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIE---F----------KDVVTWNALLSSFLRHGLAKE 160 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~---~----------~~~~~~~~li~~~~~~g~~~~ 160 (175)
|.+.|.+.++ ++|+- +.+-.|--+|...|.+++|...|-... + ++..+|.+|=.++...++.|.
T Consensus 483 AIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 483 AISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred HHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 9999999887 56764 355666667899999999988776643 1 123478888777777777775
Q ss_pred HHHH
Q 045063 161 AFGV 164 (175)
Q Consensus 161 a~~~ 164 (175)
+.+.
T Consensus 561 l~~a 564 (579)
T KOG1125|consen 561 LQEA 564 (579)
T ss_pred HHHh
Confidence 5443
No 174
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.12 Score=38.64 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=40.9
Q ss_pred HhcCChHHHHHHHHhccCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 045063 122 SKYGLLGESVEAFKEIEFK----DVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174 (175)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 174 (175)
.+.|.++.|.+=|+...+- ....||.-+. ..+.|+.+.|+++..|++++|++
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 4678888888888776532 4567777664 67888999999999999999985
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.42 Score=35.46 Aligned_cols=111 Identities=8% Similarity=-0.059 Sum_probs=83.7
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL 117 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 117 (175)
|...|-.|-..|...|+..+|...|.+-.+. |-.|+.. -|...+-.......-.++..++.+..+.. +-|+..-.-|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHH
Confidence 7888999999999999999999999998554 5445443 34444444444446789999999998743 3456677777
Q ss_pred HHHHHhcCChHHHHHHHHhccC--CCchhHHHHHHH
Q 045063 118 MDMYSKYGLLGESVEAFKEIEF--KDVVTWNALLSS 151 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~ 151 (175)
-..+...|++.+|...|+.|.+ |....|-.+|..
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 7889999999999999999973 444556666654
No 176
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.84 E-value=0.43 Score=37.74 Aligned_cols=125 Identities=8% Similarity=0.073 Sum_probs=93.6
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcC-CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHH-HHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTC-LNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVK-TALM 118 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li 118 (175)
+.+|...|+.--+..-.+.|..+|.+.++.| +.++...+++.+..++. |+...|..+|+.=... -||...| .-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4557888888888888899999999998888 55677788888887764 6777888887754432 3555544 6677
Q ss_pred HHHHhcCChHHHHHHHHhccCC---C--chhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 119 DMYSKYGLLGESVEAFKEIEFK---D--VVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~---~--~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
....+.++-+.|..+|+.-.++ + ..+|..+|+-=...|++..+..+=+.|
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 8888899999999999965533 3 467888998777888887776554444
No 177
>PLN02789 farnesyltranstransferase
Probab=95.74 E-value=0.62 Score=35.33 Aligned_cols=128 Identities=13% Similarity=0.028 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALP-APERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
+++.+-..+.+.++.++|+.++.+.++. .|+ ..+|+.--.++.+.+ .++++...++++.+... -+..+|+..--.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHH
Confidence 4555556666778889999999988654 233 346665555666666 57889999888887643 345567766555
Q ss_pred HHhcCCh--HHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063 121 YSKYGLL--GESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 121 ~~~~g~~--~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 173 (175)
+.+.|.. +++..+++.+. .+|...|+.-...+.+.|+++++++.+.++++.+.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 5566653 56777776665 34778888888888888999999999999887543
No 178
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.18 Score=37.43 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=32.4
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESV 131 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~ 131 (175)
+.+++++|++.|.+.++. .+-|.+-|..=-.++++.|..+.|.+=.+.-+. +.|+ ..+|..|=-+|...|++++|.
T Consensus 93 ~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHH
Confidence 334444444444444332 112223333334444444444444333333222 2222 234444444444444444444
Q ss_pred HHHHh
Q 045063 132 EAFKE 136 (175)
Q Consensus 132 ~~~~~ 136 (175)
+.|+.
T Consensus 170 ~aykK 174 (304)
T KOG0553|consen 170 EAYKK 174 (304)
T ss_pred HHHHh
Confidence 44443
No 179
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.76 Score=36.00 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 119 DMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
......|+.++|.=.|.... .| +..+|.-|+.+|...|.+.+|.-.-++
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 44456777788777776644 44 788899999999999988888654433
No 180
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.70 E-value=0.04 Score=32.10 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHh----CC-Ccc-hHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKG----GT-DSE-PVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
+++.+-..+...|++++|...+++..+. |- .|+ ..++..+-..|...|++++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4555555556666666666666655532 11 122 34667777777777777777777765
No 181
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.70 E-value=0.35 Score=35.57 Aligned_cols=98 Identities=6% Similarity=-0.071 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--CcchHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGT--DSEPVVKTAL 117 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l 117 (175)
..|+.-+.-+.+.|++++|...|..+.+.-..-. ...+--+-.++...|++++|...|..+.+.-. ......+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3467766666778999999999999976522111 23555667778899999999999999986421 1123345555
Q ss_pred HHHHHhcCChHHHHHHHHhccC
Q 045063 118 MDMYSKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~ 139 (175)
...|...|+.++|...++...+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6778889999999999887653
No 182
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.68 E-value=0.2 Score=42.32 Aligned_cols=128 Identities=7% Similarity=-0.007 Sum_probs=94.5
Q ss_pred cCCCChhHHHHHhhhccC-CCchhHHHHHHHHH--hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHH
Q 045063 21 ALPKRYVYTHQVFDEISH-GDLSSLNSQLFSYT--RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQ 97 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~-~~~~~~~~li~~~~--~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~ 97 (175)
..++++..|.+..+++.. .+-..|..++.++. +.|+.++|..+++.....+.. |.-|...+-.+|...+..+++..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 466788888888877643 45566888888776 579999999888887554444 66799999999999999999999
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcCChHH----HHHHHHhccCCCchhHHHHHHHH
Q 045063 98 VHALMIKGGTDSEPVVKTALMDMYSKYGLLGE----SVEAFKEIEFKDVVTWNALLSSF 152 (175)
Q Consensus 98 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~li~~~ 152 (175)
+|++..+. -|+......+-.+|.|.+.+.+ |.++++..++. ...+.++|+-.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Sli 154 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLI 154 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHH
Confidence 99998864 5777777888888999888776 56666654433 33333444433
No 183
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.63 E-value=0.23 Score=39.12 Aligned_cols=64 Identities=6% Similarity=-0.058 Sum_probs=45.9
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH----hhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA----YTFTPVLGACSALPAPERGKQVHALMIKG 105 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 105 (175)
+...|+.+-.+|.+.|++++|+..|++-.+. .|+. .+|..+-.++.+.|+.++|.+.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455777788888888888888888876544 3443 35777777778888888888887777663
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.61 E-value=0.13 Score=38.08 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=70.4
Q ss_pred HHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHH
Q 045063 85 ACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a 161 (175)
-..+.+++++|...|.+.++. .+.|.+-|..-..+|.+.|.++.|.+--+.-..- ....|..|-.+|...|++.+|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 346678899999999999885 2456778899999999999999998887776643 456899999999999999999
Q ss_pred HHHHHHHHh
Q 045063 162 FGVFQAMTR 170 (175)
Q Consensus 162 ~~~~~~m~~ 170 (175)
.+.|++-.+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887543
No 185
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.48 E-value=0.018 Score=37.94 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=25.6
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063 83 LGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 135 (175)
++.+.+.+.++....+++.+.+.+...+....+.++..|++.+..++..++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444445555555555555544433444455555555555555555555544
No 186
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.45 E-value=0.12 Score=40.66 Aligned_cols=96 Identities=4% Similarity=-0.099 Sum_probs=67.4
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch----HHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHH-
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEP----VVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS- 150 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~- 150 (175)
...++.+-.++.+.|++++|...+++.++. .|+. ..|..+..+|...|++++|...++...+-+...|..+..
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~D 152 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILND 152 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHhC
Confidence 448889999999999999999999998774 4664 368999999999999999999999877643223332111
Q ss_pred -HHHhcCChHHHHHHHHHHHhccc
Q 045063 151 -SFLRHGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 151 -~~~~~g~~~~a~~~~~~m~~~g~ 173 (175)
.+....+.+...+++++..+.|.
T Consensus 153 pdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 153 PDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred cchhhhcccHHHHHHHHHHHHhCC
Confidence 01122233466667777766653
No 187
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=95.41 E-value=0.034 Score=36.62 Aligned_cols=126 Identities=12% Similarity=0.079 Sum_probs=68.2
Q ss_pred chhhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063 14 TCISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89 (175)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~ 89 (175)
..++..+.+.+.++...+.++.+.. .+....+.++..|++.++.+...++++.. .+. -...++..|.+.
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~y-----d~~~~~~~c~~~ 83 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NNY-----DLDKALRLCEKH 83 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SSS------CTHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--ccc-----CHHHHHHHHHhc
Confidence 3477777777777777777776652 24666788888888887777777766621 112 223455555555
Q ss_pred CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCC
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGL 157 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~ 157 (175)
+.++++..++.++-...-. +..+...++++.|.+++.. .+|...|..+++.|...+.
T Consensus 84 ~l~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~--~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKK--VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp TSHHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGG--CSSSHHHHHHHHHHCTSTC
T ss_pred chHHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHh--cCcHHHHHHHHHHHHhcCc
Confidence 5555555444432211000 0012223333333333322 2367788888888776654
No 188
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.34 E-value=0.077 Score=30.35 Aligned_cols=56 Identities=5% Similarity=-0.107 Sum_probs=33.7
Q ss_pred HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045063 49 FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG 105 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 105 (175)
..|.+.++++.|.+.++.+..... -+...+...-.++.+.|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 345666667777777776655421 23345555556666667777777776666653
No 189
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.21 E-value=0.32 Score=41.20 Aligned_cols=105 Identities=16% Similarity=0.159 Sum_probs=78.8
Q ss_pred hCCCcchHHHHHHHHHhc-CCCCCHhhHHHHHHHH--hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 53 RSRNFPATWALFCYMHST-CLNLTAYTFTPVLGAC--SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
..+++..|++......+. +-. .|.-+++++ .+.|+.++|..+++.....+.. |..|...+-.+|.+.|+.|+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 457788899988886544 333 344455554 5789999999998888765544 88899999999999999999
Q ss_pred HHHHHHhccCC--CchhHHHHHHHHHhcCChHHHH
Q 045063 130 SVEAFKEIEFK--DVVTWNALLSSFLRHGLAKEAF 162 (175)
Q Consensus 130 a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~ 162 (175)
|..++++.... +..--..+..+|+|.+.+.+-.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998854 4444556677888887765443
No 190
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.20 E-value=0.66 Score=38.08 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=84.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchh---HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSS---LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+...|-+.|+++.|...++..-....+. |-.--..+..+|++++|...+++..+-.. ||...=.--.+-..++...
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcccc
Confidence 7778889999999999999887654444 33334778889999999999999855422 3332222445556788899
Q ss_pred hhHHHHHHHHHHhCCC--cc----hHHHHHH--HHHHHhcCChHHHHHHHHhcc
Q 045063 93 ERGKQVHALMIKGGTD--SE----PVVKTAL--MDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~--~~----~~~~~~l--i~~~~~~g~~~~a~~~~~~m~ 138 (175)
++|..+.....+.|.. -| .-+|=.+ -.+|.+.|++..|.+=|..+.
T Consensus 456 ~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 9999999988877641 11 1133222 366778888887777666655
No 191
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.20 E-value=0.35 Score=39.16 Aligned_cols=120 Identities=12% Similarity=-0.010 Sum_probs=78.1
Q ss_pred CChhHHHHHhhhccC--CC-chhHHHHHHHHHhCCC--------cchHHHHHHHHHhc-CCCCCHhhHHHHHHHHhcCCC
Q 045063 24 KRYVYTHQVFDEISH--GD-LSSLNSQLFSYTRSRN--------FPATWALFCYMHST-CLNLTAYTFTPVLGACSALPA 91 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~--~~-~~~~~~li~~~~~~g~--------~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~~~~~~~ 91 (175)
++.+.|..+|++..+ |+ ...|..+..++..... ...+.+...+.... ....+...|..+--.....|+
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 347789999999864 53 3445554444433211 12223333322221 122344566666444556799
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTW 145 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~ 145 (175)
+++|...+++..... |+...|..+-..|...|+.++|.+.+++.. .|...+|
T Consensus 436 ~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 436 TDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 999999999998854 788899999999999999999999998865 4544444
No 192
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.15 E-value=0.45 Score=35.29 Aligned_cols=134 Identities=9% Similarity=0.147 Sum_probs=80.7
Q ss_pred ChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHHHHHHHhcCCCchhHHHHH
Q 045063 25 RYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTPVLGACSALPAPERGKQVH 99 (175)
Q Consensus 25 ~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~ 99 (175)
++++|..+|+ -.-..|-..|++++|.+.|.+.-.. +-+.. ...|.....++.+. ++++|...+
T Consensus 30 ~~e~Aa~~y~-----------~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYE-----------KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHH
T ss_pred CHHHHHHHHH-----------HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHH
Confidence 5666666554 4455666667777777776665321 11111 12455555555444 777777777
Q ss_pred HHHHHh---CCCcch--HHHHHHHHHHHhc-CChHHHHHHHHhccC-----CC----chhHHHHHHHHHhcCChHHHHHH
Q 045063 100 ALMIKG---GTDSEP--VVKTALMDMYSKY-GLLGESVEAFKEIEF-----KD----VVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 100 ~~m~~~---~~~~~~--~~~~~li~~~~~~-g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
++.... .-.|+. ..+..+...|-.. |++++|.+.|+...+ .. ..++.-+...+++.|++++|.++
T Consensus 98 ~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~ 177 (282)
T PF14938_consen 98 EKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEI 177 (282)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 666631 113333 3667777788887 899999888887651 11 23466677889999999999999
Q ss_pred HHHHHh
Q 045063 165 FQAMTR 170 (175)
Q Consensus 165 ~~~m~~ 170 (175)
|++...
T Consensus 178 ~e~~~~ 183 (282)
T PF14938_consen 178 YEEVAK 183 (282)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 193
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.13 E-value=1.1 Score=35.84 Aligned_cols=153 Identities=13% Similarity=-0.020 Sum_probs=103.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC-C---------chhHHHHHHHHHhC----CCcchHHHHHHHHHhcCCCCCHhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG-D---------LSSLNSQLFSYTRS----RNFPATWALFCYMHSTCLNLTAYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~-~---------~~~~~~li~~~~~~----g~~~~a~~l~~~m~~~~~~~~~~t~~~ 81 (175)
+++..+=.||-+.+.+.+.+..+. + ...|..++..++.. ...+.|.+++.++.+. -|+..-|..
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 899999999999999999886542 2 23466777666654 4667899999998654 367665544
Q ss_pred HH-HHHhcCCCchhHHHHHHHHHHh---CCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC---chhHHHHHHH-HH
Q 045063 82 VL-GACSALPAPERGKQVHALMIKG---GTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSS-FL 153 (175)
Q Consensus 82 ll-~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~-~~ 153 (175)
.- ..+...|++++|.+.++..... --+.....+=-+.-.+.-.+++++|.+.|..+.+.+ ..+|.-+..+ +.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 32 3345678999999999976531 112223344455566788999999999999998542 2334333333 23
Q ss_pred hcCCh-------HHHHHHHHHHHh
Q 045063 154 RHGLA-------KEAFGVFQAMTR 170 (175)
Q Consensus 154 ~~g~~-------~~a~~~~~~m~~ 170 (175)
..|+. ++|.++|++...
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHH
Confidence 56777 888888888653
No 194
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.11 E-value=0.34 Score=39.04 Aligned_cols=156 Identities=11% Similarity=0.035 Sum_probs=109.7
Q ss_pred cCCCcch-----hhhhhcCCCChhHHHHHhhhc-cCC-----------CchhHHHHHHHHHhCCCcchHHHHHHHHHh-c
Q 045063 9 NFPAKTC-----ISIADALPKRYVYTHQVFDEI-SHG-----------DLSSLNSQLFSYTRSRNFPATWALFCYMHS-T 70 (175)
Q Consensus 9 ~~~~~~~-----ll~~~~~~~~~~~a~~~f~~~-~~~-----------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~ 70 (175)
.+.|.|. |-..|...|.=..|.+.++.= ... +...=+. ..+.....+....++|-++.. .
T Consensus 347 ~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~ 424 (579)
T KOG1125|consen 347 ELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQL 424 (579)
T ss_pred hcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhC
Confidence 4566665 566677777777777777642 110 1110010 233334455677788888744 4
Q ss_pred CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCch--hHH
Q 045063 71 CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVV--TWN 146 (175)
Q Consensus 71 ~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~--~~~ 146 (175)
+.++|...++.|---|--.|++++|...|+..++.. +-|..+||-|=...+...+.++|...+.+.. +|+-+ -||
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125|consen 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh
Confidence 645666666666666888999999999999998743 3456699999999999999999999999987 56533 466
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 045063 147 ALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m 168 (175)
.-|+ |...|.+++|.+.|-+-
T Consensus 504 lgIS-~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 504 LGIS-CMNLGAYKEAVKHLLEA 524 (579)
T ss_pred hhhh-hhhhhhHHHHHHHHHHH
Confidence 6665 79999999999988764
No 195
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.00 E-value=1.4 Score=38.08 Aligned_cols=155 Identities=5% Similarity=-0.121 Sum_probs=98.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-------CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCC--HhhHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-------GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST--CLNLT--AYTFT 80 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-------~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~--~~t~~ 80 (175)
+-..+...|+++.|...+++... ++ ...+..+-..+...|++++|...+.+.... ...+. ...+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 44566778999999998877532 11 122444555677789999999999887543 12222 22444
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhCCC-cchHHH-----HHHHHHHHhcCChHHHHHHHHhccCCCch-------hHHH
Q 045063 81 PVLGACSALPAPERGKQVHALMIKGGTD-SEPVVK-----TALMDMYSKYGLLGESVEAFKEIEFKDVV-------TWNA 147 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------~~~~ 147 (175)
.+-......|+.++|...++......-. .....+ ...+..+...|+.+.|.+.+.....+... .+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 4555667889999999988887642111 111111 11234556689999999988776543211 1345
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 045063 148 LLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+-..+...|+.++|...+.+...
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677888999999998888654
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.74 E-value=0.088 Score=37.02 Aligned_cols=142 Identities=12% Similarity=0.128 Sum_probs=82.9
Q ss_pred hhcCCCChhHHHHHhhhccC--CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH--hhHHHHHHHHhc-
Q 045063 19 ADALPKRYVYTHQVFDEISH--GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA--YTFTPVLGACSA- 88 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~--~t~~~ll~~~~~- 88 (175)
.+...|+++.|.+.|+.+.. |+ ....-.+..++.+.|++++|...|+++.+. .-.|.. ..|..-+..+..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 45578999999999999864 32 223456778888999999999999998765 222222 222222221111
Q ss_pred ---------CCCchhHHHHHHHHHHhCCCcchH-H-----------------HHHHHHHHHhcCChHHHHHHHHhccC--
Q 045063 89 ---------LPAPERGKQVHALMIKGGTDSEPV-V-----------------KTALMDMYSKYGLLGESVEAFKEIEF-- 139 (175)
Q Consensus 89 ---------~~~~~~a~~~~~~m~~~~~~~~~~-~-----------------~~~li~~~~~~g~~~~a~~~~~~m~~-- 139 (175)
.+....|...|+.+++.- |+.. . --.+...|.+.|.+..|..-++.+.+
T Consensus 94 ~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS
T ss_pred ccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 122346666666666542 2211 0 11234667788888888777777763
Q ss_pred CCch----hHHHHHHHHHhcCChHHHH
Q 045063 140 KDVV----TWNALLSSFLRHGLAKEAF 162 (175)
Q Consensus 140 ~~~~----~~~~li~~~~~~g~~~~a~ 162 (175)
|++. ..-.++.+|.+.|..+.+.
T Consensus 172 p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 172 PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 3332 4567788888888877443
No 197
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.31 Score=36.64 Aligned_cols=132 Identities=10% Similarity=0.031 Sum_probs=86.7
Q ss_pred chhHHhhcCCCc--ch-hhhhhcCCCChhHHHHHhh-hc-------cC-------CCchhHHHHHHHHHhCCCcchHHHH
Q 045063 2 LSFIRMTNFPAK--TC-ISIADALPKRYVYTHQVFD-EI-------SH-------GDLSSLNSQLFSYTRSRNFPATWAL 63 (175)
Q Consensus 2 ~~~~~~~~~~~~--~~-ll~~~~~~~~~~~a~~~f~-~~-------~~-------~~~~~~~~li~~~~~~g~~~~a~~l 63 (175)
..+++.+.++|. -. |.++|.....++. +..+. ++ ++ ....+-..++..-....+++++...
T Consensus 8 r~~I~~~~l~p~~rr~~LsS~fs~e~~w~~-r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~ 86 (418)
T KOG4570|consen 8 RRQIVLPQLSPAGRRYLLSSAFSDEHKWEA-REKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYY 86 (418)
T ss_pred HHHHhhhcCCchhcchhhHHHhhhhhhhhH-HHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHH
Confidence 346667788773 33 5566666655543 33333 22 11 2444556666666667788888888
Q ss_pred HHHHHhc---CCCCCH--hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 64 FCYMHST---CLNLTA--YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 64 ~~~m~~~---~~~~~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+-..+.+ -..|+. ++|.-++.. -+++++..+...=++.|+-||.++++.+|+.+.+.+.+.+|.++.-.|.
T Consensus 87 LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 87 LYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 8888765 233333 333333322 3567888887777788999999999999999999999998887776665
No 198
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.71 E-value=0.53 Score=35.28 Aligned_cols=117 Identities=11% Similarity=0.163 Sum_probs=73.2
Q ss_pred cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc--CC----CchhHHHHHHHHHHhCC---CcchHHHHHHHHHHHhcCCh
Q 045063 57 FPATWALFCYMHSTCLNLTAYTFTPVLGACSA--LP----APERGKQVHALMIKGGT---DSEPVVKTALMDMYSKYGLL 127 (175)
Q Consensus 57 ~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~ 127 (175)
+++.+++++.|++.|++-+..+|.+.+-.... .. ....+.++|+.|++... .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45777888889999999888776664433333 22 35688899999997533 4555677777665 44444
Q ss_pred H----HHHHHHHhccC-----CCchhHHHHHHHHHhcCC---hHHHHHHHHHHHhcccCC
Q 045063 128 G----ESVEAFKEIEF-----KDVVTWNALLSSFLRHGL---AKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 128 ~----~a~~~~~~m~~-----~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p 175 (175)
+ .++..++.+.+ .|..-+-+-|-++..... ..++.++++.+.+.|+++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki 215 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI 215 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc
Confidence 3 35555555543 244444444444443222 457788888998888763
No 199
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=1.3 Score=32.94 Aligned_cols=145 Identities=11% Similarity=0.049 Sum_probs=99.2
Q ss_pred hhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 19 ADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
.....|+...|..+|+...+ .+...--.+..+|...|+.+.|..++..+...--....+....-+.-..+....++.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34567888888888887653 345566778899999999999999999985542222223323334455555566665
Q ss_pred HHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccCC-----CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 96 KQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEFK-----DVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 96 ~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
..+-+..-. .| |...=-.+...|.-.|+.+.|.+.+-.+.++ |...-..|++.|.-.|..+.+..-++
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 555555443 34 5667777888999999999998877777644 56677788888888886555444443
No 200
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.45 E-value=1.8 Score=33.72 Aligned_cols=132 Identities=10% Similarity=0.010 Sum_probs=86.3
Q ss_pred CCCChhHHHHHhhhccC-C-----------------------------------C-chhHHHHHHHHHhCCCcchHHHHH
Q 045063 22 LPKRYVYTHQVFDEISH-G-----------------------------------D-LSSLNSQLFSYTRSRNFPATWALF 64 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~-~-----------------------------------~-~~~~~~li~~~~~~g~~~~a~~l~ 64 (175)
-.|+++.|.+-|+-|.. | . .-.+...+...|..|++++|+++.
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred hcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 36999999999998853 1 1 112688999999999999999999
Q ss_pred HHHHhc-CCCCCHh--hHHHHHHHHhcC---CCchhHHHHHHHHHHhCCCcchH-HHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 65 CYMHST-CLNLTAY--TFTPVLGACSAL---PAPERGKQVHALMIKGGTDSEPV-VKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 65 ~~m~~~-~~~~~~~--t~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
+.-++. -+.++.. .-..|+.+-... .++..|+..-.+-. .+.||.. .--.-..++.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 987655 4556654 445555554332 24455554444333 3566654 2233447788899999998888887
Q ss_pred c--CCCchhHHHHHHHHHhcCC
Q 045063 138 E--FKDVVTWNALLSSFLRHGL 157 (175)
Q Consensus 138 ~--~~~~~~~~~li~~~~~~g~ 157 (175)
= +|...+|...+ +.+.|+
T Consensus 290 WK~ePHP~ia~lY~--~ar~gd 309 (531)
T COG3898 290 WKAEPHPDIALLYV--RARSGD 309 (531)
T ss_pred HhcCCChHHHHHHH--HhcCCC
Confidence 5 44555554444 456665
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.44 E-value=0.59 Score=37.00 Aligned_cols=120 Identities=7% Similarity=0.030 Sum_probs=89.7
Q ss_pred cchhhhhhcCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHH-HHhcCCCCCHhhH-HHHHHH
Q 045063 13 KTCISIADALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCY-MHSTCLNLTAYTF-TPVLGA 85 (175)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~-m~~~~~~~~~~t~-~~ll~~ 85 (175)
|...++.-.+-.-++.|+++|-+..+ +++..++++|..++. |+...|..+|+- |+.- ||+..| .--+..
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f---~d~~~y~~kyl~f 475 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF---PDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC---CCchHHHHHHHHH
Confidence 34477777788889999999999875 578889999998865 688999999987 4333 455443 334666
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCcc--hHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 86 CSALPAPERGKQVHALMIKGGTDSE--PVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
+...++-+.|+++|+.-..+ +..+ ..+|..+|+.-...|++..+..+=+.|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 78899999999999966543 3334 468999999999999987665444433
No 202
>PRK15331 chaperone protein SicA; Provisional
Probab=94.34 E-value=0.64 Score=31.59 Aligned_cols=82 Identities=9% Similarity=-0.055 Sum_probs=45.4
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHH
Q 045063 87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
.+.|++++|..+|..+...+. -+..=|-.|-.++-..+.+++|...|...- ..|....-..-.||...|+.+.|..
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 345666666666666654332 233345555566666666666666665432 2244444445555666666666666
Q ss_pred HHHHHH
Q 045063 164 VFQAMT 169 (175)
Q Consensus 164 ~~~~m~ 169 (175)
.|....
T Consensus 127 ~f~~a~ 132 (165)
T PRK15331 127 CFELVN 132 (165)
T ss_pred HHHHHH
Confidence 655443
No 203
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.25 E-value=2 Score=33.32 Aligned_cols=154 Identities=9% Similarity=-0.023 Sum_probs=92.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCC-------chhHHHHHHHHHh---CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGD-------LSSLNSQLFSYTR---SRNFPATWALFCYMHSTCLNLTAYTFTPVLGA 85 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~-------~~~~~~li~~~~~---~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~ 85 (175)
|+-+|-...++|...++.+.++..+ ...---...++-+ .|+.+.|++++.......-.++..||..+-..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 6668999999999999999998641 1111123344445 89999999999997766666777788777655
Q ss_pred HhcC---------CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC-hHHH---HHHH---Hhcc-C-----C--C
Q 045063 86 CSAL---------PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL-LGES---VEAF---KEIE-F-----K--D 141 (175)
Q Consensus 86 ~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a---~~~~---~~m~-~-----~--~ 141 (175)
+... ..++.|...|.+--+ +.||...=-+++-...-.|. ++.. .++- .... + + |
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 5321 124455555543322 33444321122222222332 2222 2222 1111 1 1 2
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 142 VVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 142 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
-=-+.+++.+++-.|+.++|.+..++|...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 224667899999999999999999998765
No 204
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=1.1 Score=36.03 Aligned_cols=54 Identities=13% Similarity=0.017 Sum_probs=32.2
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 83 LGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
-+.+.+.|+++.|...|.++++.. +-|...|+....+|.+.|.+..|..--+..
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445556666666666666666553 344556666666666666666665544433
No 205
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=1.3 Score=35.45 Aligned_cols=144 Identities=13% Similarity=0.037 Sum_probs=102.8
Q ss_pred CCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcC-CCCCHhhHHHHHHHHhcCCCchhHHHH
Q 045063 23 PKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTC-LNLTAYTFTPVLGACSALPAPERGKQV 98 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~t~~~ll~~~~~~~~~~~a~~~ 98 (175)
.|+.-.+..-|+.... | +...|-.+-..|....+.++.+..|.+...-. -.|| +|-.=-....-.+++++|.+=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHH
Confidence 4666667777776542 2 33337778888999999999999999875542 2233 444333334444567888888
Q ss_pred HHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 99 HALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 99 ~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
|+..+. +.| +...|-.+--+.-|.+.++++...|++..++ -+-.||..-..+.-.++++.|.+.|+.-++
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 887765 333 3456666666667888999999999998843 456899999999999999999999887654
No 206
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=94.22 E-value=1.6 Score=32.53 Aligned_cols=110 Identities=6% Similarity=0.070 Sum_probs=79.4
Q ss_pred cchHHHHHHHHHh-cCCCCCHhhHHHHHHHHhc-CC-CchhHHHHHHHHHH-hCCCcchHHHHHHHHHHHhcCChHHHHH
Q 045063 57 FPATWALFCYMHS-TCLNLTAYTFTPVLGACSA-LP-APERGKQVHALMIK-GGTDSEPVVKTALMDMYSKYGLLGESVE 132 (175)
Q Consensus 57 ~~~a~~l~~~m~~-~~~~~~~~t~~~ll~~~~~-~~-~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~ 132 (175)
+.+|+++|+..-- ..+--|..+-..+++.... .+ ....-.++...+.. .|-.++..+...+|..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4567777763211 3355677777788887765 22 34444555555553 3467888999999999999999999999
Q ss_pred HHHhcc-----CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 133 AFKEIE-----FKDVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 133 ~~~~m~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
+++.-. ..|..-|..+|..-..+|+..-...+..
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 999865 3388899999999999999766555543
No 207
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.05 E-value=1.3 Score=35.23 Aligned_cols=130 Identities=9% Similarity=-0.011 Sum_probs=65.7
Q ss_pred hcCCCChhHHHHHhh--hc-cCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHH
Q 045063 20 DALPKRYVYTHQVFD--EI-SHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGK 96 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~--~~-~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~ 96 (175)
..-.++++.+.++.+ ++ +.-+....+.++.-+-+.|-.+.|+++-.+-... ++-..+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHH
Confidence 334677777544443 11 1223445888888888889888888876553221 22333445555544
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC------------------------CchhHHHHHHHH
Q 045063 97 QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK------------------------DVVTWNALLSSF 152 (175)
Q Consensus 97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------~~~~~~~li~~~ 152 (175)
++..+ ..+...|..|-+...+.|+++-|++.|....+. ..--+|.-..++
T Consensus 339 ~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~ 412 (443)
T PF04053_consen 339 EIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAA 412 (443)
T ss_dssp HHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44322 123445555555555555555555555554311 111366666777
Q ss_pred HhcCChHHHHHHHHH
Q 045063 153 LRHGLAKEAFGVFQA 167 (175)
Q Consensus 153 ~~~g~~~~a~~~~~~ 167 (175)
.-.|+.+++.+++.+
T Consensus 413 ~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 413 LLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHT-HHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 777888888877765
No 208
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=93.94 E-value=0.65 Score=40.13 Aligned_cols=151 Identities=9% Similarity=0.057 Sum_probs=95.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHH--HHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVL--GACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll--~~~~~~~ 90 (175)
|=..|+...+...|.+.|++..+ .|...+......|++..+++.|..+.-.--+. -+.-...++-+- -.+.+.+
T Consensus 498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yyLea~ 576 (1238)
T KOG1127|consen 498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYYLEAH 576 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccccCcc
Confidence 44555566677788888888765 36677888999999999999999883222111 111112233222 2234556
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCch-hHHHHHH--HHHhcCChHHHHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVV-TWNALLS--SFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~li~--~~~~~g~~~~a~~~~~~ 167 (175)
+...+..-|+.-.+-. +-|...|..+..+|.++|.+..|.++|.....-++. +|.-... .-+-.|...+|+..+..
T Consensus 577 n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred chhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6777777777665532 346679999999999999999999999776633222 2222111 12455666666666555
Q ss_pred H
Q 045063 168 M 168 (175)
Q Consensus 168 m 168 (175)
.
T Consensus 656 i 656 (1238)
T KOG1127|consen 656 I 656 (1238)
T ss_pred H
Confidence 4
No 209
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=93.89 E-value=2.4 Score=35.69 Aligned_cols=122 Identities=15% Similarity=0.050 Sum_probs=90.3
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMY 121 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~ 121 (175)
|...-..+.+.+..++|+.-+.+... +.|-. ..|...-..+...|..++|.+.|..-.. +.|+ +...+++...+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 55666777788888888877777633 33333 3555555566677888899888887665 4455 45889999999
Q ss_pred HhcCChHHHHH--HHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 122 SKYGLLGESVE--AFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 122 ~~~g~~~~a~~--~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
.+.|+-.-|.. ++.++.+ | +...|-.+-..+-+.|+.+.|.+.|.--.
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 99998777777 7777763 4 66789999999999999999999887654
No 210
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.84 E-value=1.2 Score=29.13 Aligned_cols=123 Identities=9% Similarity=0.004 Sum_probs=78.1
Q ss_pred chhhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 14 TCISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
..++..+.+.+.+......++.+... +...+|.+|..|++.+ .+..++.+.. ..+.....-++..|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 33777777778888888888776432 4556888888888763 3444444442 123444555777788878
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc-CChHHHHHHHHhccCCCchhHHHHHHHHHh
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKY-GLLGESVEAFKEIEFKDVVTWNALLSSFLR 154 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 154 (175)
-++++..++..+.. |...++.+... ++++.|.+++.. ..+...|..++..+..
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~--~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK--QNNPELWAEVLKALLD 137 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh--CCCHHHHHHHHHHHHc
Confidence 77777777765421 22233333434 778888887776 3355678777776653
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.84 E-value=1.6 Score=30.67 Aligned_cols=123 Identities=15% Similarity=0.024 Sum_probs=72.2
Q ss_pred HHHHhCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh---
Q 045063 49 FSYTRSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK--- 123 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 123 (175)
..+.+.|++.+|.+.|++....-. .|- ....-.+..++.+.|+.+.|...++++++.-......-+.-.+.+.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 345578999999999999987622 222 236677788999999999999999999875221111222222222221
Q ss_pred ----------cCChHHHHHHHHhccC--CCch-----------hHH-------HHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 124 ----------YGLLGESVEAFKEIEF--KDVV-----------TWN-------ALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 124 ----------~g~~~~a~~~~~~m~~--~~~~-----------~~~-------~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.+...+|...|+.+.. |++. ..+ .+..-|.+.|.+..|..-++.+.+.
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred CccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 1223456666666552 2211 111 1244577888888888888887653
No 212
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.61 E-value=1.1 Score=33.23 Aligned_cols=78 Identities=9% Similarity=0.016 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH-----hCCCcchHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK-----GGTDSEPVVKTA 116 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~ 116 (175)
.++.-+++.+...|+++.+...+++.... =+-+...|..+|.++.+.|+...|...|.++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34566777888888888888888888655 334666888999999999998888888888875 488888888777
Q ss_pred HHHH
Q 045063 117 LMDM 120 (175)
Q Consensus 117 li~~ 120 (175)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 7766
No 213
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=93.58 E-value=1.2 Score=29.70 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=66.8
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcC-----CCCCHhhHHHHHHHHhcCCC-chhHHHHHHHHHHhCCCcchHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTC-----LNLTAYTFTPVLGACSALPA-PERGKQVHALMIKGGTDSEPVVKTA 116 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~-----~~~~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 116 (175)
..|+++.-...-+++.....+++.+..-. -..+..+|.+++++.++... --.+..+|..|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 36888888888889998888888874321 12455689999999987776 5677889999998888999999999
Q ss_pred HHHHHHhcCChHHH
Q 045063 117 LMDMYSKYGLLGES 130 (175)
Q Consensus 117 li~~~~~~g~~~~a 130 (175)
+|.+..+- ...+.
T Consensus 121 li~~~l~g-~~~~~ 133 (145)
T PF13762_consen 121 LIKAALRG-YFHDS 133 (145)
T ss_pred HHHHHHcC-CCCcc
Confidence 99986554 44433
No 214
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.55 E-value=0.24 Score=24.27 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+|+.|-..|.+.|++++|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566667777777777777777763
No 215
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.54 E-value=1.3 Score=28.85 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=78.0
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+...-..+|..+.+.+..+.....++.....+ ..+....+.++..+++... +.....+.. ..+......++.
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~ 77 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGK 77 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHH
Confidence 34456778889988889999999999987776 3667788888888887532 333333331 234455566888
Q ss_pred HHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhc-CChHHHHHHHHH
Q 045063 120 MYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRH-GLAKEAFGVFQA 167 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~ 167 (175)
.+.+.+.++++..++..+.. |...+..+... ++.+.|.+.+++
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 88888888888888887653 22233333333 677777776665
No 216
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=93.49 E-value=1.3 Score=37.12 Aligned_cols=120 Identities=12% Similarity=0.007 Sum_probs=93.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~ 91 (175)
.-..+.+.++.+.|...+.+...- ....|.---..+...|.+++|...|.... -+.|+.+ .-+++-.++.+.|+
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al--~ldP~hv~s~~Ala~~lle~G~ 733 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL--ALDPDHVPSMTALAELLLELGS 733 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHhCC
Confidence 566788889999998888877653 33345555556667889999999998874 3567666 77888888999997
Q ss_pred chhHHH--HHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 92 PERGKQ--VHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 92 ~~~a~~--~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
...+.. ++..+.+.+ +.+...|=.+-..+-+.|+.+.|.+.|+...
T Consensus 734 ~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred cchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 766666 888888754 3567799999999999999999999998754
No 217
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.40 E-value=3.4 Score=33.15 Aligned_cols=126 Identities=13% Similarity=0.047 Sum_probs=88.5
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHh-----hHHHHHHHHhcC----CCchhHHHHHHHHHHhCCCcchHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAY-----TFTPVLGACSAL----PAPERGKQVHALMIKGGTDSEPVV 113 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~-----t~~~ll~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~ 113 (175)
...+++...=.||-+.+++++.+-.+. ++..... +|..++..++.. ...+.+.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344445555568889999999886543 4443332 455555555543 4668899999998874 588888
Q ss_pred HHHHH-HHHHhcCChHHHHHHHHhccCC-------CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 114 KTALM-DMYSKYGLLGESVEAFKEIEFK-------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 114 ~~~li-~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
|...- ..+...|++++|.+.|+..... ....+--+..++.-.+++++|.+.|.++.+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 86665 4456799999999999975531 2334445566688899999999999999864
No 218
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.37 E-value=2.5 Score=31.49 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=85.3
Q ss_pred CCCChhHHHHHhhhccC-----CCchhHHHHHHHHHh-CCC-cchHHHHHHHHH-hcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 22 LPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTR-SRN-FPATWALFCYMH-STCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~-~g~-~~~a~~l~~~m~-~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
+...+.+|.++|+.... .|..+-..+++.... .+. ...-.++.+-+. ..|-.++..+..++++.+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 44456678888885432 366666777777766 222 222222333332 2357788999999999999999999
Q ss_pred hHHHHHHHHHHh-CCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 94 RGKQVHALMIKG-GTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 94 ~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
.-.++|...... +...|..-|..+|+.-...|+..-...++++
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999999988865 6677899999999999999999999988876
No 219
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.14 E-value=0.2 Score=24.52 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh
Q 045063 113 VKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
+|..|-..|.+.|++++|.+++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477888999999999999999987
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=1.8 Score=32.00 Aligned_cols=124 Identities=7% Similarity=0.009 Sum_probs=84.3
Q ss_pred hhhhhcCCCChhHHHHHhhhcc----CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH-----H
Q 045063 16 ISIADALPKRYVYTHQVFDEIS----HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA-----C 86 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~-----~ 86 (175)
++.++---+.+.-...++.+.. +.++..-..+.+.-.+.||.+.|...|++..+..-+.|..+++.++.- +
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 4444444455544444444443 346777788888888999999999999998877677777777776532 2
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063 87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK 140 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (175)
.-..++..+...+.+..... ..|....|+-.-+..-.|+..+|.+.++.|.+.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33456777777777776543 234555555555556678999999999999854
No 221
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=93.03 E-value=4.5 Score=33.50 Aligned_cols=122 Identities=10% Similarity=0.079 Sum_probs=87.8
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 122 (175)
+-.++..|-+.|+++.|+...+..... .|+.+ -|..=-..+...|++++|..++++..+.. .+|...-+--.....
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 345677888899999999999987433 45554 45555578889999999999999988754 466666667788888
Q ss_pred hcCChHHHHHHHHhccCCCc--h--------hHHHH--HHHHHhcCChHHHHHHHHHH
Q 045063 123 KYGLLGESVEAFKEIEFKDV--V--------TWNAL--LSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~~~--~--------~~~~l--i~~~~~~g~~~~a~~~~~~m 168 (175)
+....++|.++.....+.+. + +|-.+ -.+|.|.|++..|+.-|.+.
T Consensus 451 rAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 451 RANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 99999999998877664321 1 34444 33577777777776655443
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=1.9 Score=33.44 Aligned_cols=121 Identities=7% Similarity=-0.047 Sum_probs=81.5
Q ss_pred HHHHhCCCcchHHHHHHHHHhc-----CCC---------CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHH
Q 045063 49 FSYTRSRNFPATWALFCYMHST-----CLN---------LTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVK 114 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~-----~~~---------~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 114 (175)
+.|.|.|++..|...|++.... +.. +-...++.+.-++.+.+++..|.+.-....... ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3567888888888888885432 121 123467777788888899998888887777653 4555544
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChH-HHHHHHHHHHh
Q 045063 115 TALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAK-EAFGVFQAMTR 170 (175)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~ 170 (175)
=---.++...|+++.|+..|+.+. +| |-.+-+-|+.+--+..+.. +..++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677888899999999999887 45 4445555666544544443 33566777653
No 223
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.84 E-value=2.8 Score=36.80 Aligned_cols=135 Identities=10% Similarity=0.011 Sum_probs=81.9
Q ss_pred cchhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 13 KTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
|+.+-.+-.+.|.+.+|.+-| ++..|...|--+|....+.|.+++-.+.+.-.++..-.|... +.|+-++++.+++
T Consensus 1107 WsqlakAQL~~~~v~dAieSy--ikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESY--IKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHH--HhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchH
Confidence 444666666677777776655 334577788899999999999988887766555555555443 3677778888776
Q ss_pred hhHHHHHHHHHHhCCCcchHH--------------------------HHHHHHHHHhcCChHHHHHHHHhccCCCchhHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVV--------------------------KTALMDMYSKYGLLGESVEAFKEIEFKDVVTWN 146 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~--------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 146 (175)
.+.+.+.. .||... |.-|.......|++..|...-+. ..+..||-
T Consensus 1183 ~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRK--Ans~ktWK 1253 (1666)
T KOG0985|consen 1183 TELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARK--ANSTKTWK 1253 (1666)
T ss_pred HHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--ccchhHHH
Confidence 66554432 233333 34444444445554444332221 23566777
Q ss_pred HHHHHHHhcCChHH
Q 045063 147 ALLSSFLRHGLAKE 160 (175)
Q Consensus 147 ~li~~~~~~g~~~~ 160 (175)
.+--+|+..+.+.-
T Consensus 1254 ~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRL 1267 (1666)
T ss_pred HHHHHHhchhhhhH
Confidence 77777666654443
No 224
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=0.68 Score=37.06 Aligned_cols=100 Identities=14% Similarity=0.045 Sum_probs=68.1
Q ss_pred hhcCCCChhHHHHHhhhcc---CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchh
Q 045063 19 ADALPKRYVYTHQVFDEIS---HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPER 94 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~ 94 (175)
+-...|+++.|..+|-... .+|.+.|..=..+|.+.|++++|++==.+- ..+.|+-. -|+-.-.+..-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~--~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT--RRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHH--HhcCCchhhHHHHhHHHHHhcccHHH
Confidence 3456788888888887643 346777888888888888887776533332 34556643 67777777777788888
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALMDMY 121 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li~~~ 121 (175)
|...|.+=.+.. +.+...++-+.+++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 888877655432 34456777777777
No 225
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.59 E-value=0.95 Score=33.74 Aligned_cols=88 Identities=14% Similarity=0.134 Sum_probs=69.3
Q ss_pred CCCCCHhhHHHHHHHHhcC-----CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC----------------ChHH
Q 045063 71 CLNLTAYTFTPVLGACSAL-----PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG----------------LLGE 129 (175)
Q Consensus 71 ~~~~~~~t~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------~~~~ 129 (175)
+-+-|-.+|...+..+... +.++-....+..|.+.|+.-|..+|+.||+.+-+-. +-.-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 4456777888888777543 467777888889999999999999999999986543 2334
Q ss_pred HHHHHHhcc----CCCchhHHHHHHHHHhcCCh
Q 045063 130 SVEAFKEIE----FKDVVTWNALLSSFLRHGLA 158 (175)
Q Consensus 130 a~~~~~~m~----~~~~~~~~~li~~~~~~g~~ 158 (175)
+..++++|. .||--+-.+||.+|.+.|-.
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 778888887 57888999999999988753
No 226
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.58 E-value=0.39 Score=24.62 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 113 VKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+|..+...|.+.|++++|.++|+...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555566666666666666666654
No 227
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=92.31 E-value=1.5 Score=26.36 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHH
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
+.++++.+.+.|+ .+......+-.+-...|..+.|.+++..++ +....|...++++-.+|..+-|.+
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhhc
Confidence 4566677777664 344445555544456788899999999988 888889999999988888776654
No 228
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.25 E-value=1.9 Score=28.71 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=69.6
Q ss_pred HHhhcCCCcc------hhhhhhcCCCChhHHHHHhhhccC---------CCchhHHHHHHHHHhCCC-cchHHHHHHHHH
Q 045063 5 IRMTNFPAKT------CISIADALPKRYVYTHQVFDEISH---------GDLSSLNSQLFSYTRSRN-FPATWALFCYMH 68 (175)
Q Consensus 5 ~~~~~~~~~~------~ll~~~~~~~~~~~a~~~f~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~l~~~m~ 68 (175)
+...+..+.+ ++|...+..++..-..++++.+.. .+-.+|.+++.+.++... --.+..+|..|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3444555543 277777888888888888887742 366779999999977766 457889999999
Q ss_pred hcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 69 STCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 69 ~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
+.+.+++..-|..+++++.+....+..
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 988999999999999999886444433
No 229
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=92.11 E-value=0.26 Score=32.17 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=25.6
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC 86 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~ 86 (175)
+.|+-.+|..+|..|+++|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 446678899999999999998886 67777654
No 230
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.91 E-value=3.9 Score=30.10 Aligned_cols=97 Identities=14% Similarity=0.090 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCC--CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--CcchHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCL--NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGT--DSEPVVKTALM 118 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~--~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~li 118 (175)
.|+.-+..+ +.|++.+|...|....+... .-....+-=|-.++...|+.+.|..+|..+.+.-. +--....--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 488777766 67778889888888876521 11222344467888888888888888888886421 11124555666
Q ss_pred HHHHhcCChHHHHHHHHhccCC
Q 045063 119 DMYSKYGLLGESVEAFKEIEFK 140 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~ 140 (175)
.+..+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777888888888888877643
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.63 E-value=1.8 Score=31.76 Aligned_cols=88 Identities=10% Similarity=-0.011 Sum_probs=67.8
Q ss_pred hhhcCCCChhHHHHHhhhccC--C-C---chhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH-hhHHHHHHHHhcC
Q 045063 18 IADALPKRYVYTHQVFDEISH--G-D---LSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA-YTFTPVLGACSAL 89 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~-~t~~~ll~~~~~~ 89 (175)
..+.+.|++..|...|....+ | + ...+==|-+++...|++++|-..|..+.+. +=.|.. .+.-=|-.+..+.
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 345688999999999998864 2 2 223445789999999999999999999765 323333 3555666778889
Q ss_pred CCchhHHHHHHHHHHh
Q 045063 90 PAPERGKQVHALMIKG 105 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~ 105 (175)
|+.++|..+|+++.+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999999875
No 232
>PRK15331 chaperone protein SicA; Provisional
Probab=91.46 E-value=0.88 Score=30.93 Aligned_cols=84 Identities=7% Similarity=-0.083 Sum_probs=45.7
Q ss_pred hcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHH
Q 045063 20 DALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGK 96 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~ 96 (175)
+...|++++|..+|+-+.. + +..-|.-|-.++-..+.++.|.+.|...-..+. -|...+-..-.|+...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 3456777777777766542 2 333344444555555677777777766432211 11222334445566666777777
Q ss_pred HHHHHHHH
Q 045063 97 QVHALMIK 104 (175)
Q Consensus 97 ~~~~~m~~ 104 (175)
..|+..+.
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 76666655
No 233
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.45 E-value=4.2 Score=29.56 Aligned_cols=127 Identities=6% Similarity=-0.030 Sum_probs=76.2
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 121 (175)
|. ....+.+.|++++|.+.|++....-..+... ..-.+..++.+.++.++|...+++..+.-..-...-+.-.+.+.
T Consensus 36 Y~-~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 36 YA-TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HH-HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 44 3444567899999999999997752222221 22345677789999999999999999753222222333344333
Q ss_pred Hh-----------------cCCh---HHHHHHHHhccC--CCch-----------h------HHH-HHHHHHhcCChHHH
Q 045063 122 SK-----------------YGLL---GESVEAFKEIEF--KDVV-----------T------WNA-LLSSFLRHGLAKEA 161 (175)
Q Consensus 122 ~~-----------------~g~~---~~a~~~~~~m~~--~~~~-----------~------~~~-li~~~~~~g~~~~a 161 (175)
+. ..+. .+|...|+...+ ||+. . ... +..-|.+.|.+..|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA 194 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV 194 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 21 1122 345555555542 2211 1 111 23347788999888
Q ss_pred HHHHHHHHhc
Q 045063 162 FGVFQAMTRE 171 (175)
Q Consensus 162 ~~~~~~m~~~ 171 (175)
..-|+.+.++
T Consensus 195 ~~r~~~v~~~ 204 (243)
T PRK10866 195 VNRVEQMLRD 204 (243)
T ss_pred HHHHHHHHHH
Confidence 8888888753
No 234
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.40 E-value=2.9 Score=27.59 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=62.8
Q ss_pred HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh-CCCcchH---HHHHHHHHHHhc
Q 045063 49 FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG-GTDSEPV---VKTALMDMYSKY 124 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~---~~~~li~~~~~~ 124 (175)
-+....|+.++|++.|.+.... .+-....||.--.++.-.|+.++|..=+.+..+. |-+ +.. .|..--..|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 4567789999999999987665 3345668888888888889988888777776653 322 222 333334567788
Q ss_pred CChHHHHHHHHhcc
Q 045063 125 GLLGESVEAFKEIE 138 (175)
Q Consensus 125 g~~~~a~~~~~~m~ 138 (175)
|+.|.|..-|+..-
T Consensus 129 g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 129 GNDDAARADFEAAA 142 (175)
T ss_pred CchHHHHHhHHHHH
Confidence 88888888887653
No 235
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.29 E-value=2.4 Score=26.43 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=52.2
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..++|..+-+.+...+-. ...+--+-+......|++++|..+.+...-||...|-+|-. .|.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 356777776666544321 22222333466778899999998888888888888888755 467777777766666655
Q ss_pred cc
Q 045063 171 ER 172 (175)
Q Consensus 171 ~g 172 (175)
.|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 44
No 236
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.23 E-value=3.9 Score=28.82 Aligned_cols=72 Identities=17% Similarity=0.115 Sum_probs=32.7
Q ss_pred chHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh---CCCcchHHHHHHHHHHHhcCChHHH
Q 045063 58 PATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG---GTDSEPVVKTALMDMYSKYGLLGES 130 (175)
Q Consensus 58 ~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a 130 (175)
++|++.|-++...+..-++..... +..+....+.+++.+++-+..+. +-.+|+..+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555554443322222222 22233344455555555544421 2234455555555555555555554
No 237
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=91.14 E-value=5.8 Score=30.62 Aligned_cols=49 Identities=8% Similarity=0.006 Sum_probs=26.5
Q ss_pred hhcCCCChhHHHHHhhhccCCCchhHHHHH---HHHHhCCCcchHHHHHHHH
Q 045063 19 ADALPKRYVYTHQVFDEISHGDLSSLNSQL---FSYTRSRNFPATWALFCYM 67 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~a~~l~~~m 67 (175)
.+...|++.+|...|....+-|...|-++. ..|...|+...|+.=+.+.
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 344566677777777666555554444443 3444455555555544444
No 238
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=91.03 E-value=3.3 Score=30.80 Aligned_cols=91 Identities=10% Similarity=0.078 Sum_probs=65.7
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 121 (175)
...=|.++++.|++.+++.-.-+--+. .++|..--..+++ |++.+.+..+.++-....+.--.-+..-|.++++.|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 344589999999999998877665443 4545444444444 889999999988888877643334455688888888
Q ss_pred Hh-----cCChHHHHHHHHh
Q 045063 122 SK-----YGLLGESVEAFKE 136 (175)
Q Consensus 122 ~~-----~g~~~~a~~~~~~ 136 (175)
.. .|.+++|+++...
T Consensus 164 Ll~VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHHHHhccccHHHHHHHHhc
Confidence 65 7999999988753
No 239
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.02 E-value=0.66 Score=23.71 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5778889999999999999999998764
No 240
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.99 E-value=5.1 Score=34.54 Aligned_cols=137 Identities=12% Similarity=-0.003 Sum_probs=87.1
Q ss_pred hhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CC--------CCC-HhhHHHHHHHHh
Q 045063 18 IADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST-CL--------NLT-AYTFTPVLGACS 87 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~--------~~~-~~t~~~ll~~~~ 87 (175)
+.|...|+.|.|.+-++.++ +...|..|-+.|.+.++++-|.--+-.|.+. |. .|+ ...-..++ ..
T Consensus 736 SfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvL--Ai 811 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVL--AI 811 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHH--HH
Confidence 45778899998887776554 4467999999999998888887777777542 21 122 11212222 34
Q ss_pred cCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 88 ALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-DVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
..|.+++|..+|.+.++. ..|=..|-..|.+++|.++-+.=.+- =-.||...-.-+-..++.+.|++.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 678889999998887653 33445566788888888877653321 11244444444445667777777666
Q ss_pred H
Q 045063 167 A 167 (175)
Q Consensus 167 ~ 167 (175)
+
T Consensus 883 K 883 (1416)
T KOG3617|consen 883 K 883 (1416)
T ss_pred h
Confidence 4
No 241
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.93 E-value=4.2 Score=28.61 Aligned_cols=97 Identities=8% Similarity=0.004 Sum_probs=54.3
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC---CCcchHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGG---TDSEPVVKTA 116 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ 116 (175)
.+..---|-.+..+.|+..+|...|.+...--+--|......+-++....+++..+...++.+-+.. -.||. .-.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll 165 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLL 165 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHH
Confidence 3333445556666667777777766665544343444556666666666666666666666665432 12222 223
Q ss_pred HHHHHHhcCChHHHHHHHHhcc
Q 045063 117 LMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+-..|...|..++|+..|+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHH
Confidence 4455556666666666665543
No 242
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.90 E-value=4.2 Score=28.59 Aligned_cols=117 Identities=14% Similarity=0.052 Sum_probs=82.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCCHhhHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHST---CLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~t~~~ll~~~~~ 88 (175)
|-.+....|+..+|...|.+... .|....-.+-++....+++..|...+++.-+. +-.||. -..+-..+..
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa 172 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTLAA 172 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHHHh
Confidence 77888889999999999988654 46666677777788889999999999887554 333443 3344566777
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
.|..+.|+..|+.... +.|+...-.-.-....+.|+.+++..-+..
T Consensus 173 ~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 173 QGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred cCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 8888889999988877 456655444444556677766666544333
No 243
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.89 E-value=5.8 Score=33.92 Aligned_cols=116 Identities=9% Similarity=-0.059 Sum_probs=74.8
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchh---HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSS---LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
-|+...+-..++.|..+-..-..+.... .-..-..+.+.|++++|.+-|.+-... +.|+ .++.-+....+.
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~I 413 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRI 413 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHH
Confidence 3444445555555555544433222222 223334455789999999999886443 3343 345555666666
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
..-..+++.+.+.|+. +...-+.|+.+|.+.++.++..++++...
T Consensus 414 knLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 414 KNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6777777888888874 56667889999999999998888887765
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.85 E-value=3.4 Score=27.42 Aligned_cols=79 Identities=9% Similarity=-0.066 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhc-CC-CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHST-CL-NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~-~~-~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 121 (175)
|+.-..++ +.|++++|.+.|+....+ .. +-...+...++.++.+.+++++|...+++.++.....--.-|.-.+.++
T Consensus 14 y~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 14 YQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 44433333 667888888888887665 11 1223466677777788888888888888887754322223455555554
Q ss_pred Hh
Q 045063 122 SK 123 (175)
Q Consensus 122 ~~ 123 (175)
+.
T Consensus 93 ~~ 94 (142)
T PF13512_consen 93 SY 94 (142)
T ss_pred HH
Confidence 43
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.78 E-value=2.7 Score=27.85 Aligned_cols=68 Identities=6% Similarity=0.052 Sum_probs=50.5
Q ss_pred cCCCChhHHHHHhhhccCC------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 21 ALPKRYVYTHQVFDEISHG------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
.+.|+++.|.+.|+.+... ....---++.+|.+.|++++|...+++.++....=..+-|...+.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 4789999999999998642 3345677899999999999999999998765332222455555555553
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.71 E-value=3.6 Score=33.06 Aligned_cols=111 Identities=11% Similarity=-0.015 Sum_probs=72.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC------------------------CCch--h--HHHHHHHHHhCCCcchHHHHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH------------------------GDLS--S--LNSQLFSYTRSRNFPATWALFCYM 67 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~------------------------~~~~--~--~~~li~~~~~~g~~~~a~~l~~~m 67 (175)
+|-+--.+..+.+++++|++..+ +++. . -.-+-.+..+.|+.++|.+.|.+|
T Consensus 206 ILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdL 285 (539)
T PF04184_consen 206 ILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDL 285 (539)
T ss_pred hhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHH
Confidence 55555566778888888887632 1211 1 133556677889999999999998
Q ss_pred HhcCC-CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCC
Q 045063 68 HSTCL-NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGL 126 (175)
Q Consensus 68 ~~~~~-~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~ 126 (175)
.+..- .-.....-.|+.++...+...++..++.+-.+...+.+ ...|+..+-.+...|+
T Consensus 286 lke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 286 LKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGD 346 (539)
T ss_pred HhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcc
Confidence 76532 22334777889999999999999999888754333222 3467776655444443
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.63 E-value=5.2 Score=29.24 Aligned_cols=149 Identities=12% Similarity=0.125 Sum_probs=98.1
Q ss_pred hcCCCChhHHHHHhhhccC--C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH--hhHHHHHHHHhcCC
Q 045063 20 DALPKRYVYTHQVFDEISH--G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA--YTFTPVLGACSALP 90 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~--~t~~~ll~~~~~~~ 90 (175)
-.+.|++++|.+.|+.+.. | ...+--.++.++.+.+++++|....++..+. +-.||. +.|.-.+..+....
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 3478999999999999864 2 2233456678888999999999999997655 555554 35555555444433
Q ss_pred ----CchhHHHHHHHHH---Hh----CCCcchHH----H--------HHHHHHHHhcCChHHHHHHHHhccCC---Cc--
Q 045063 91 ----APERGKQVHALMI---KG----GTDSEPVV----K--------TALMDMYSKYGLLGESVEAFKEIEFK---DV-- 142 (175)
Q Consensus 91 ----~~~~a~~~~~~m~---~~----~~~~~~~~----~--------~~li~~~~~~g~~~~a~~~~~~m~~~---~~-- 142 (175)
+...+.+.+..+. ++ ...||... . -.+...|.+.|.+..|..=+++|.+. ..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 4455555555554 22 22333321 1 23446778999999888888888743 22
Q ss_pred -hhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 143 -VTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 143 -~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
...-.|..+|.+.|..++|...-.-+
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 24556788999999998888764433
No 248
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.60 E-value=2.9 Score=33.21 Aligned_cols=128 Identities=11% Similarity=0.070 Sum_probs=77.3
Q ss_pred CCCChhHHHHHhhhccCC---C------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH--hcCC
Q 045063 22 LPKRYVYTHQVFDEISHG---D------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC--SALP 90 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~---~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~--~~~~ 90 (175)
+.+++..+.++|.++-+. + .+.-+-+|++|... +++.......+..+. .| ...|-+++.+. .+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 567888899999887532 2 22246777887654 444444444444333 12 33455555544 4567
Q ss_pred CchhHHHHHHHHHHh--CCCc------------chHHHHHHHHHHHhcCChHHHHHHHHhccC--------CCchhHHHH
Q 045063 91 APERGKQVHALMIKG--GTDS------------EPVVKTALMDMYSKYGLLGESVEAFKEIEF--------KDVVTWNAL 148 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~l 148 (175)
...+|.+.+...... +..| |...=+..+++....|.+.+++.+++.|.. -|+.+||-+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777776666543 2222 222235667788888999998888888762 277778774
Q ss_pred HHHHH
Q 045063 149 LSSFL 153 (175)
Q Consensus 149 i~~~~ 153 (175)
+-.+.
T Consensus 174 vlmls 178 (549)
T PF07079_consen 174 VLMLS 178 (549)
T ss_pred HHHHh
Confidence 44333
No 249
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.37 E-value=2.9 Score=28.79 Aligned_cols=100 Identities=11% Similarity=-0.007 Sum_probs=68.2
Q ss_pred hcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch--HHHHHHHHHHHhcCChHHHHHHHHhccCC--Cch
Q 045063 69 STCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEP--VVKTALMDMYSKYGLLGESVEAFKEIEFK--DVV 143 (175)
Q Consensus 69 ~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~ 143 (175)
++.++-+.. .+..+-+.+++.|+.+.|.+.+.++.+....+.. ..+-.+|......|++..+...+...... ...
T Consensus 28 ~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~ 107 (177)
T PF10602_consen 28 SNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGG 107 (177)
T ss_pred hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 344444443 7888888999999999999999998876554443 46788888888899999988888776633 111
Q ss_pred hHHHH-----HHH--HHhcCChHHHHHHHHHH
Q 045063 144 TWNAL-----LSS--FLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 144 ~~~~l-----i~~--~~~~g~~~~a~~~~~~m 168 (175)
-|..- ..| +...|++..|.+.|-+.
T Consensus 108 d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 108 DWERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred hHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 13222 222 33667888888887654
No 250
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.18 E-value=5.3 Score=33.71 Aligned_cols=105 Identities=11% Similarity=0.069 Sum_probs=70.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
.+.-+...|+...|.++-.+++-||-..|=.=+.+++..+++++-+++=..++. ..=|...+.+|.+.|+..+|
T Consensus 690 Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHH
Confidence 445555677777788887777777777777777788887777766655554421 33455567778888888777
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 135 (175)
...+.+. .+.. -.+.+|.+.|++.+|.++--
T Consensus 764 ~KYiprv-----~~l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 764 KKYIPRV-----GGLQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred hhhhhcc-----CChH----HHHHHHHHhccHHHHHHHHH
Confidence 7776542 1111 56777777777777765443
No 251
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.09 E-value=0.92 Score=22.36 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+++.|-..|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45566666666666666666666654
No 252
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.05 E-value=0.6 Score=23.08 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMH 68 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~ 68 (175)
.+++.|-..|...|++++|..++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456777788888888888888887764
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.78 E-value=6.9 Score=29.32 Aligned_cols=143 Identities=13% Similarity=0.042 Sum_probs=89.4
Q ss_pred HHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC
Q 045063 28 YTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGT 107 (175)
Q Consensus 28 ~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 107 (175)
...+.+++...+....--.--......|++.+|..+|+......- -+...-..+..++...|+.+.|..++..+...--
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 444555554433222222223455678999999999999876522 2244566778899999999999999998764322
Q ss_pred CcchHHHHHHHHHHHhcCChHHHHHHHHhcc-CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 108 DSEPVVKTALMDMYSKYGLLGESVEAFKEIE-FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 108 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.........-|..+.+.....+...+-.... .| |...=-.+-..+...|+.+.|.+.+-.+.++
T Consensus 200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222233344555555555555544444433 45 4445555667788899999999888777654
No 254
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.68 E-value=4.9 Score=27.47 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=89.1
Q ss_pred CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063 38 HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL 117 (175)
Q Consensus 38 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 117 (175)
.++...|..+|+.+.+.|. ...+..+.+.++-+|.......+-.... ..+.+.++=-.|.++ + ...+..+
T Consensus 26 ~~~~~L~~lli~lLi~~~~----~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-L---~~~~~~i 95 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQ----FSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-L---GTAYEEI 95 (167)
T ss_pred CCCHHHHHHHHHHHHHcCC----HHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-h---hhhHHHH
Confidence 4677789999999999887 4456667777888888877766644433 345566665555543 1 1246677
Q ss_pred HHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 045063 118 MDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRER 172 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 172 (175)
++.+...|++-+|.++.+....-+...-..++.+-.+.+|...=..+|+-..++|
T Consensus 96 ievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 96 IEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 8889999999999999998766666677788888888888776666666555544
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.54 E-value=9.5 Score=30.82 Aligned_cols=76 Identities=8% Similarity=0.059 Sum_probs=55.3
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCC-cchHHHHHHHHHHHhcCChHHHHHHHHhccC---CC--chhHHHHHHHHHhc
Q 045063 82 VLGACSALPAPERGKQVHALMIKGGTD-SEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KD--VVTWNALLSSFLRH 155 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~--~~~~~~li~~~~~~ 155 (175)
+-.++-+.|+.++|...+.+|.+.... -+..+.-.|++++...+.+.++..++..-.+ |. ...|+..+-.+-+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 445556789999999999999875322 2455889999999999999999999987653 22 34577765544444
Q ss_pred CC
Q 045063 156 GL 157 (175)
Q Consensus 156 g~ 157 (175)
|+
T Consensus 345 ~d 346 (539)
T PF04184_consen 345 GD 346 (539)
T ss_pred cc
Confidence 43
No 256
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.31 E-value=2.3 Score=26.49 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+.-+..+....+.|+..+..+-+.++.|.+++..|.++|+.++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344444455566666666666666666666666665554
No 257
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.30 E-value=2.2 Score=32.34 Aligned_cols=88 Identities=5% Similarity=-0.070 Sum_probs=65.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC-------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG-------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
++..-....+++.+...+=+++.. +...+ +.+.-+. .-+.++++.+...-.+.|+-||-.+++.+|+.+.+
T Consensus 70 ~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk 147 (418)
T KOG4570|consen 70 LVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLK 147 (418)
T ss_pred hhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHh
Confidence 444555567888888887777642 22222 2222222 33678999999998999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHh
Q 045063 89 LPAPERGKQVHALMIKG 105 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~ 105 (175)
.++..+|.++...|...
T Consensus 148 ~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 148 KENYKDAASVVTEVMMQ 164 (418)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 99999999888887743
No 258
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=7.5 Score=29.03 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=74.0
Q ss_pred CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc---CChHHHHHHHHhccC--C-CchhHHHH
Q 045063 75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY---GLLGESVEAFKEIEF--K-DVVTWNAL 148 (175)
Q Consensus 75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~--~-~~~~~~~l 148 (175)
|...|-.|-..+...|+.+.|..-|..-.+.. .++...+..+..++... .+-.++..+|++... | |+..-..|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 44589999999999999999999999988742 34555666665555432 245578999999873 4 56667777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 045063 149 LSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
--.+...|++.+|...|+.|...
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 77889999999999999999764
No 259
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=89.17 E-value=2.9 Score=36.41 Aligned_cols=124 Identities=14% Similarity=0.047 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc---hHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKGGTDSE---PVVKTAL 117 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l 117 (175)
..|..|-..|+...+...|.+-|...-+ +.|+. ..+..+.+.+++..+++.|..+.-..-+ ..|- ..-|-..
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~~~q--ka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLRAAQ--KAPAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh--hchHHHHHhhhhhc
Confidence 3477777777766666666666666522 33333 3677777778888888888777222222 1111 1122223
Q ss_pred HHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 118 MDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
=-.|.+.+.+.+|..-|+.-. .| |.-.|..+..+|.+.|+...|...|.+..
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 334556777777777776654 23 77789999999999999999999997643
No 260
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.64 E-value=6.3 Score=27.36 Aligned_cols=118 Identities=9% Similarity=-0.016 Sum_probs=49.5
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH-HHHHHHHHH--HhcCChH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPV-VKTALMDMY--SKYGLLG 128 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~--~~~g~~~ 128 (175)
+.|..++|+.-|.+..+.|..--.+ .-.-.-....+.|+...|-..|++.-...-.|-.. -..-|=.+| ...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555443322111 11111122344555555555555554433223222 111222222 3455555
Q ss_pred HHHHHHHhccCC-C---chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 129 ESVEAFKEIEFK-D---VVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 129 ~a~~~~~~m~~~-~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+...-.+.+..+ + ...-.+|--+-.+.|++..|.++|.++.+
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 555555444322 1 11223344444455555555555555543
No 261
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.47 E-value=6.1 Score=27.01 Aligned_cols=99 Identities=4% Similarity=-0.035 Sum_probs=68.8
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCch
Q 045063 64 FCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVV 143 (175)
Q Consensus 64 ~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 143 (175)
.....+.+++|+...+..+++.+.+.|..... .++.+.++-+|.......+-.+.. .+..+.++=-.|.++=..
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhh
Confidence 33445678999999999999999999986554 444566777887766666644443 233444444444444334
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
.+..+++.+...|++-+|.++.++.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 5777888888899999999988774
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.40 E-value=5 Score=26.50 Aligned_cols=63 Identities=11% Similarity=0.144 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063 111 PVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 173 (175)
..-...-++.....|+-|.-.++..++. +++....-.+-.+|.+.|+..++.+++++--+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444555566666666666666666654 44555555566677777777777777777666665
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.39 E-value=6.7 Score=33.57 Aligned_cols=80 Identities=9% Similarity=-0.016 Sum_probs=54.0
Q ss_pred hcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHH
Q 045063 20 DALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVH 99 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~ 99 (175)
+.+.|++++|-.-+-+--. ..-=..+|.-|..+.++.+--..++...+.|+ .+...-+.|+++|.+.++.+...++.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~--~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI 454 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIG--FLEPSEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFI 454 (933)
T ss_pred HHhcCCHHHHHHHHHHHcc--cCChHHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHH
Confidence 3456777777666644321 11124567777777777888888888888877 55566678889999988887777665
Q ss_pred HHH
Q 045063 100 ALM 102 (175)
Q Consensus 100 ~~m 102 (175)
+.-
T Consensus 455 ~~~ 457 (933)
T KOG2114|consen 455 SKC 457 (933)
T ss_pred hcC
Confidence 543
No 264
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.37 E-value=14 Score=31.08 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhccC--CCch-----------hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 115 TALMDMYSKYGLLGESVEAFKEIEF--KDVV-----------TWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~m~~--~~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
..+++.....+++++|+.+-+..++ +|+. -|.---.+|-+.|+-.+|.++++++...
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 4567778888999999998888773 3433 2444567899999999999999998654
No 265
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=87.60 E-value=2.6 Score=26.50 Aligned_cols=56 Identities=5% Similarity=-0.082 Sum_probs=38.6
Q ss_pred cchhhhhhcCCCChhHHHHHhhhccC----------CCchhHHHHHHHHHhCCCcchHHHHHHHHHh
Q 045063 13 KTCISIADALPKRYVYTHQVFDEISH----------GDLSSLNSQLFSYTRSRNFPATWALFCYMHS 69 (175)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~f~~~~~----------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 69 (175)
+++|+.+|... +......+++.-.. ....-|..++.-|...|.+++|++++.+...
T Consensus 2 DTaLlk~Yl~~-~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 2 DTALLKCYLET-NPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cHHHHHHHHHh-CHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 45667777777 66666666553211 1233588888888888888899988888765
No 266
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=7.5 Score=30.34 Aligned_cols=117 Identities=8% Similarity=0.018 Sum_probs=84.4
Q ss_pred hhcCCCChhHHHHHhhhccC------------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHH
Q 045063 19 ADALPKRYVYTHQVFDEISH------------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFT 80 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~------------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~ 80 (175)
.|.+.|++..|...|+.... .-..+++.+.-++.|.+++..|+..=...+..+ ++|....-
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHH
Confidence 56788999999998887431 124568899999999999999998888876542 24444444
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhCCCcchHH-HHHHHHHHHhcCChHH-HHHHHHhcc
Q 045063 81 PVLGACSALPAPERGKQVHALMIKGGTDSEPVV-KTALMDMYSKYGLLGE-SVEAFKEIE 138 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~-a~~~~~~m~ 138 (175)
-=-.++...|+++.|+..|+.+++ +.|+-.. -+.|+..--+.....+ ..++|..|-
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445778888999999999999998 4566554 4555555555555544 467777775
No 267
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.46 E-value=7 Score=26.52 Aligned_cols=110 Identities=9% Similarity=0.052 Sum_probs=59.7
Q ss_pred hhhhhcCCCChhHHHHHhhhcc--CCCchhHH-HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEIS--HGDLSSLN-SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~--~~~~~~~~-~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+++.-.+.++.+++..+++-+. .|...... .--.-+.+.|++.+|..+|++..+.. |.......|+..|.....-
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 4555567778888888888775 34332221 12233456788999999999875553 3444445566666554433
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGES 130 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 130 (175)
..=+..-++..+.+-.|+.. .++..+....+...|
T Consensus 94 ~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a 128 (160)
T PF09613_consen 94 PSWRRYADEVLESGADPDAR---ALVRALLARADLEPA 128 (160)
T ss_pred hHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccch
Confidence 33333334444444333332 344444444444333
No 268
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.31 E-value=2 Score=20.17 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+|..+-.+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566677777777888888777777654
No 269
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.29 E-value=9.9 Score=30.41 Aligned_cols=117 Identities=11% Similarity=0.036 Sum_probs=77.5
Q ss_pred HhCCCcchHHHHHHHHHhcCCC-C---C-HhhHHHHHHHHhcCCCchhHHHHHHHHHH-hCCCcchHHHHHHHHHHHhcC
Q 045063 52 TRSRNFPATWALFCYMHSTCLN-L---T-AYTFTPVLGACSALPAPERGKQVHALMIK-GGTDSEPVVKTALMDMYSKYG 125 (175)
Q Consensus 52 ~~~g~~~~a~~l~~~m~~~~~~-~---~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g 125 (175)
-+.+++.+|..+|.+.-...-. | . .+.-+-+++++... +.+........+.+ .|-.+....|-.++. -+.|
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~--Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVA--YKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHhh
Confidence 3678999999999998554211 1 1 33566788888754 44555555566654 343444444444443 3778
Q ss_pred ChHHHHHHHHhccCC------------------CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 126 LLGESVEAFKEIEFK------------------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 126 ~~~~a~~~~~~m~~~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
++.+|.+.+..-... |..-=++.+.++...|+++++..++++|.++
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 889888877665421 2233456788899999999999999998764
No 270
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.28 E-value=4.6 Score=30.37 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=55.8
Q ss_pred ChhHHHHHhhhccC-------CCchhHHHHHHHHHhCCCc----chHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcC-CC
Q 045063 25 RYVYTHQVFDEISH-------GDLSSLNSQLFSYTRSRNF----PATWALFCYMHSTCLNLTAY-TFTPVLGACSAL-PA 91 (175)
Q Consensus 25 ~~~~a~~~f~~~~~-------~~~~~~~~li~~~~~~g~~----~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~-~~ 91 (175)
....|.++|+.|++ ++-..+..++.. ...+. +.+...|+.+.+.|+..+.. -+.+-+-++... ..
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 34558888888875 345556666555 22222 46667777777777776544 333333333332 22
Q ss_pred --chhHHHHHHHHHHhCCCcchHHHHHH
Q 045063 92 --PERGKQVHALMIKGGTDSEPVVKTAL 117 (175)
Q Consensus 92 --~~~a~~~~~~m~~~~~~~~~~~~~~l 117 (175)
...+.++++.+++.|+++....|..+
T Consensus 196 ~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34778888888888888777776544
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.89 E-value=12 Score=28.81 Aligned_cols=144 Identities=8% Similarity=-0.023 Sum_probs=90.6
Q ss_pred CCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHhhHHHHH--HHHhcCCCchhHH
Q 045063 23 PKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAYTFTPVL--GACSALPAPERGK 96 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~t~~~ll--~~~~~~~~~~~a~ 96 (175)
+|+..+|...++++.+ .|...++..=.+|.-+|+.+.-...+++.... +-...-.+|-.=| =++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 3555556666676654 27777888888888888888888888887433 2222222332222 2334667788887
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 97 QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-------DVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
..-++-.+-+ ..|.-...+..+..--.|++.++.++...-... -.+-|-..--.+...+..+.|+++|..
T Consensus 196 k~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 196 KQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 7766554422 234446677777777888888888887765522 122344444456667888999888865
No 272
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=86.59 E-value=6.1 Score=24.93 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=39.8
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..++|..+.+.+...+- .....--+-+..+.+.|+|++|...=....-||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45666666666665443 222222333455566777777744444444566666666543 466666666666665543
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.15 E-value=12 Score=29.91 Aligned_cols=18 Identities=11% Similarity=-0.230 Sum_probs=11.1
Q ss_pred hhhhhcCCCChhHHHHHh
Q 045063 16 ISIADALPKRYVYTHQVF 33 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f 33 (175)
++..+-+.|.++.|.++-
T Consensus 301 i~~fL~~~G~~e~AL~~~ 318 (443)
T PF04053_consen 301 IARFLEKKGYPELALQFV 318 (443)
T ss_dssp HHHHHHHTT-HHHHHHHS
T ss_pred HHHHHHHCCCHHHHHhhc
Confidence 666666667777766664
No 274
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.09 E-value=1.8 Score=22.39 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=10.7
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 045063 150 SSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.+|...|+.+.|.+++++...
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHcCChHHHHHHHHHHHH
Confidence 345555555555555555443
No 275
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=85.77 E-value=3.3 Score=26.06 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 114 KTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
|..|+..|...|..++|.+++....
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 4444444555555555554444443
No 276
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=85.75 E-value=1.7 Score=24.30 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=22.9
Q ss_pred HHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 128 GESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 128 ~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+...++++.+. +.|-.-.-.+|.||...|+.++|.++++++.+
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444443 22444444566777777777777776666543
No 277
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=85.44 E-value=1.8 Score=26.12 Aligned_cols=37 Identities=5% Similarity=-0.032 Sum_probs=20.1
Q ss_pred CCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcch
Q 045063 22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPA 59 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 59 (175)
..|+.+.|+++.+.++ +...+|...++++-+.|...-
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~L 84 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHEL 84 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhh
Confidence 4455555555555555 555555555555555554433
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.38 E-value=4.1 Score=27.27 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=44.2
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcchH---HHHHHHHHHHhcCChHHHHHHHHhccCCC-chhHHHHHHHHH--hcCChH
Q 045063 87 SALPAPERGKQVHALMIKGGTDSEPV---VKTALMDMYSKYGLLGESVEAFKEIEFKD-VVTWNALLSSFL--RHGLAK 159 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~--~~g~~~ 159 (175)
...+++.++..+++.|.. +.|... ++-.. .+...|++++|.++|.+..+.. ...|..-+.++| ..|+.+
T Consensus 21 L~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 447788888888888875 344433 44433 3568899999999999988654 334554444444 445433
No 279
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.35 E-value=6.7 Score=24.26 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+++.-+..+....+.|+.....+-+.++.|.+|+..|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555544
No 280
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=85.17 E-value=4 Score=21.48 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=15.8
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVL 83 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll 83 (175)
+.|-+.++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3445555555555555555555554444443
No 281
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=84.98 E-value=16 Score=28.33 Aligned_cols=120 Identities=9% Similarity=0.052 Sum_probs=74.9
Q ss_pred HHHhCCCcchHHHHHHHHHhcCCC------------CCHhhH--HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHH
Q 045063 50 SYTRSRNFPATWALFCYMHSTCLN------------LTAYTF--TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKT 115 (175)
Q Consensus 50 ~~~~~g~~~~a~~l~~~m~~~~~~------------~~~~t~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 115 (175)
.+.|.|.++.|.+=|+..++.... +....| -..+..+...|+...+.+....+++- .+-|...+.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 455778888888888777644221 111112 22345556677777777777777763 345677777
Q ss_pred HHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 116 ALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 116 ~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.-..+|...|++..|..-++...+ -++...--+-.-+...|+.+.++...+|..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 778888888888887666665542 2444444445556677777777776666654
No 282
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.79 E-value=8 Score=27.31 Aligned_cols=75 Identities=9% Similarity=0.011 Sum_probs=57.4
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-------CCCchhHHHHHHHHHhcCCh
Q 045063 86 CSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-------FKDVVTWNALLSSFLRHGLA 158 (175)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~~~~~~~~li~~~~~~g~~ 158 (175)
+++.|+ +.|...|-.+...+.--+....-.|...|. ..+.+++..++.... ..|+..+..|.+.|.+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455555 567777777777666667778888887777 667788887777654 44788999999999999999
Q ss_pred HHHH
Q 045063 159 KEAF 162 (175)
Q Consensus 159 ~~a~ 162 (175)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
No 283
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=84.39 E-value=7.9 Score=25.62 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=42.8
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
..-+...+++..+.|+-+....+...+.+. -.++....-.+..+|.+.|+..++.+++.+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 345566678888888888888888888753 367888888899999999999999887765
No 284
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.26 E-value=2.7 Score=18.74 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=10.1
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 045063 116 ALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 116 ~li~~~~~~g~~~~a~~~~~ 135 (175)
.+...+...|+.++|.++++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555543
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=84.20 E-value=16 Score=31.09 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=16.3
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063 110 EPVVKTALMDMYSKYGLLGESVEAFKEIEFK 140 (175)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (175)
+....-.+.+++.+.|.-++|.+.+-+-..|
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p 881 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSLP 881 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence 3444455555555555555555555544433
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.09 E-value=3.1 Score=19.33 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.|..+-..|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355566677777788888777777654
No 287
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.86 E-value=5.6 Score=32.91 Aligned_cols=125 Identities=12% Similarity=-0.005 Sum_probs=65.1
Q ss_pred CCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHH
Q 045063 22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHAL 101 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~ 101 (175)
-.|+++.|..++..+++ ..-+.+..-+.+.|..++|+++-. |.. .-+....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s~---------D~d---~rFelal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELST---------DPD---QRFELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcCC---------Chh---hhhhhhhhcCcHHHHHHHHHh
Confidence 35666666665555542 334555556666666666655422 111 012223345555555554433
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC------------------------CchhHHHHHHHHHhcCC
Q 045063 102 MIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK------------------------DVVTWNALLSSFLRHGL 157 (175)
Q Consensus 102 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------~~~~~~~li~~~~~~g~ 157 (175)
. -+..-|..|-++....|++..|.+.|..-..- -.-..|.-.-+|...|+
T Consensus 663 ~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~ 736 (794)
T KOG0276|consen 663 A------NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGD 736 (794)
T ss_pred h------cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCC
Confidence 2 23445566666666666666665555543310 11124444556777788
Q ss_pred hHHHHHHHHH
Q 045063 158 AKEAFGVFQA 167 (175)
Q Consensus 158 ~~~a~~~~~~ 167 (175)
.+++.+++.+
T Consensus 737 ~~~C~~lLi~ 746 (794)
T KOG0276|consen 737 YEECLELLIS 746 (794)
T ss_pred HHHHHHHHHh
Confidence 8888877654
No 288
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=83.62 E-value=2.1 Score=32.01 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 045063 145 WNALLSSFLRHGLAKEAFGVFQAMTRERVE 174 (175)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 174 (175)
||.-|..-++.||+++|+.+++|-++.|++
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 668888888888888888888888887764
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.61 E-value=12 Score=25.97 Aligned_cols=120 Identities=12% Similarity=-0.021 Sum_probs=86.2
Q ss_pred hcCCCChhHHHHHhhhccCCCchhHHHHH-----HHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHH--HhcCCC
Q 045063 20 DALPKRYVYTHQVFDEISHGDLSSLNSQL-----FSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGA--CSALPA 91 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~--~~~~~~ 91 (175)
.++.+..++|..-|..+.+.+.-.|-.|- ....+.|+-.+|...|++.-...-.|-.. -..-|=.+ +..+|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 46788999999999999987777776654 34556799999999999997665555443 22223222 457888
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 139 (175)
++......+.+...+-+.-...-..|--+--+.|++.+|...|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888888776544322223345666667799999999999999764
No 290
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=83.36 E-value=4.8 Score=21.16 Aligned_cols=35 Identities=9% Similarity=0.046 Sum_probs=28.5
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 86 CSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
..+.|-.+++..++++|.+.|+..+...+..++.-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 45667778999999999999998888888877653
No 291
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=83.28 E-value=5 Score=32.00 Aligned_cols=86 Identities=5% Similarity=-0.049 Sum_probs=65.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC--
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP-- 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~-- 90 (175)
||.-|...|++.+|..+++++.-| ..+.+.+++.+..+.|+....++++++--..| ..|-+-+-++|.+..
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~RV~ds 590 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFERVYDS 590 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhhhhcc
Confidence 888999999999999999998766 56679999999999999888888888875554 456667777776643
Q ss_pred ------CchhHHHHHHHHHHh
Q 045063 91 ------APERGKQVHALMIKG 105 (175)
Q Consensus 91 ------~~~~a~~~~~~m~~~ 105 (175)
+++.|.+.|+...+.
T Consensus 591 l~DlsLDvPna~ekf~~~Ve~ 611 (645)
T KOG0403|consen 591 LPDLSLDVPNAYEKFERYVEE 611 (645)
T ss_pred CcccccCCCcHHHHHHHHHHH
Confidence 345555555555544
No 292
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.17 E-value=1.6 Score=20.16 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=17.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 045063 148 LLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
+-.++.+.|+.++|.+.|+++.++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 345566778888888888877654
No 293
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=83.10 E-value=2.3 Score=22.02 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=17.2
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhc
Q 045063 47 QLFSYTRSRNFPATWALFCYMHST 70 (175)
Q Consensus 47 li~~~~~~g~~~~a~~l~~~m~~~ 70 (175)
+-.+|.+.|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 456777777777777777777644
No 294
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.90 E-value=4.9 Score=23.77 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=29.1
Q ss_pred cCCCchhHHHHHHHHHHhCCCcc-h-HHHHHHHHHHHhcCChHHHHHH
Q 045063 88 ALPAPERGKQVHALMIKGGTDSE-P-VVKTALMDMYSKYGLLGESVEA 133 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~li~~~~~~g~~~~a~~~ 133 (175)
.....++|...|....+.-..+. . .+...++.+|+..|+++++..+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777665433332 2 2667777888888887776543
No 295
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=82.58 E-value=17 Score=26.86 Aligned_cols=149 Identities=9% Similarity=0.000 Sum_probs=91.9
Q ss_pred cCCCChhHHHHHhhhccC------CC------chhHHHHHHHHHhCCCcchHHHHHHHHHhc--------CCCCCH----
Q 045063 21 ALPKRYVYTHQVFDEISH------GD------LSSLNSQLFSYTRSRNFPATWALFCYMHST--------CLNLTA---- 76 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~------~~------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------~~~~~~---- 76 (175)
.+.|+.+.|..++.+... |+ ...||+=...+.+..++++|...+++..+- ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 467999999999998763 22 234677666665554887777766664322 233333
Q ss_pred -hhHHHHHHHHhcCCCch---hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHH
Q 045063 77 -YTFTPVLGACSALPAPE---RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALL 149 (175)
Q Consensus 77 -~t~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li 149 (175)
.+...+..++...+..+ +|..+.+.+... ..-...++---++...+.++.+.+.+.+..|... ....+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 36677778887777654 455566666543 2223455555666666789999999999988743 234455555
Q ss_pred HHH---HhcCChHHHHHHHHHHHhc
Q 045063 150 SSF---LRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 150 ~~~---~~~g~~~~a~~~~~~m~~~ 171 (175)
..+ .... .+.|...+.++...
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHH
Confidence 544 3333 34566666665543
No 296
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=82.47 E-value=6.4 Score=33.07 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=61.5
Q ss_pred hhhhhhcCCCChhHHHHHhhhccCC------CchhHHHHHHHHHhCCCcc--hHHHHHHHHH-hcCCCCCHhhHHHHHHH
Q 045063 15 CISIADALPKRYVYTHQVFDEISHG------DLSSLNSQLFSYTRSRNFP--ATWALFCYMH-STCLNLTAYTFTPVLGA 85 (175)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~f~~~~~~------~~~~~~~li~~~~~~g~~~--~a~~l~~~m~-~~~~~~~~~t~~~ll~~ 85 (175)
+|+.+|..+|++-.+.++++.+-.. =..-||..|..+.+.|+++ +..+-.++.. +..+.-|..||..+..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 3999999999999999999887532 2456999999999999876 3344344432 33566788899888877
Q ss_pred HhcCCCchhHHHHHHHHH
Q 045063 86 CSALPAPERGKQVHALMI 103 (175)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~ 103 (175)
......-..+.-++.+++
T Consensus 113 sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 113 SLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred hcChHhHHhccHHHHHHH
Confidence 765444344444444444
No 297
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.28 E-value=1.7 Score=20.90 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=18.0
Q ss_pred cchHHHHHHHHHHHhcCChHHHH
Q 045063 109 SEPVVKTALMDMYSKYGLLGESV 131 (175)
Q Consensus 109 ~~~~~~~~li~~~~~~g~~~~a~ 131 (175)
-|...|+.+-..|...|++++|.
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 35668888888888888888875
No 298
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=82.17 E-value=2.9 Score=24.99 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=16.4
Q ss_pred CCChhHHHHHhhhccCCCchhHHHHHHHHHhCC
Q 045063 23 PKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSR 55 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g 55 (175)
..+.+.+.++.+.++.++..+|....+++-..|
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 344444555555555555555555555554443
No 299
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=82.09 E-value=34 Score=29.93 Aligned_cols=114 Identities=3% Similarity=-0.097 Sum_probs=71.3
Q ss_pred CcchhhhhhcCCCChhHHHHHhhhccC------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhH
Q 045063 12 AKTCISIADALPKRYVYTHQVFDEISH------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTF 79 (175)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~ 79 (175)
.|..|.++|.+.+++|-|.-++.+|.. .+..+-..+-.--.+.|.+++|..+|.+-++-
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~--------- 829 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY--------- 829 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------
Confidence 456689999999999999888888853 12122222333334679999999999987554
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 80 TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
-.|=+-|-..|.+++|.++-+.=.+ +. -..||-.....+-..+|.+.|.+.|+.-
T Consensus 830 DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 830 DLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 2233344567888888887553222 21 1235555555555566666666666554
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.40 E-value=10 Score=23.46 Aligned_cols=60 Identities=7% Similarity=0.017 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 59 ATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 59 ~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
++.+-+..+-...+.|+.....+.+++|.+.+++..|-.+++-.+.. +..+...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 45555555556678899999999999999999999999999988732 3335557776664
No 301
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=81.35 E-value=13 Score=24.66 Aligned_cols=35 Identities=6% Similarity=-0.075 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY 77 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 77 (175)
--..++..+.+.++.-.|.++|+++.+.+...+..
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~isla 56 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLA 56 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHh
Confidence 34444444444444444444444444444444433
No 302
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=81.30 E-value=11 Score=30.77 Aligned_cols=103 Identities=9% Similarity=-0.005 Sum_probs=62.2
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH-----
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPV----- 112 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----- 112 (175)
+.....-++.-|.+.+.+++|..++..|-=. ..+. ..+.+.+.+.+.+..--++.+..++...-.=..|...
T Consensus 407 G~l~~~eL~~~yl~~~qi~eAi~lL~smnW~-~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~ 485 (545)
T PF11768_consen 407 GDLGLVELISQYLRCDQIEEAINLLLSMNWN-TMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDAT 485 (545)
T ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHhCCcc-ccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHH
Confidence 3344567888999999999999999998322 2222 1355566777777765566666666666443333322
Q ss_pred --HHHHHHHHH--------HhcCChHHHHHHHHhccCCCch
Q 045063 113 --VKTALMDMY--------SKYGLLGESVEAFKEIEFKDVV 143 (175)
Q Consensus 113 --~~~~li~~~--------~~~g~~~~a~~~~~~m~~~~~~ 143 (175)
-|..-|..| .|.+++++|+.+--.+..+|..
T Consensus 486 ~~ey~d~V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~DLF 526 (545)
T PF11768_consen 486 VLEYRDPVSDLARRFFHHLLRYQRFEKAFLLAVDIGDRDLF 526 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccchHHH
Confidence 333333333 3466666666666655555543
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.97 E-value=4.3 Score=18.88 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+|..+-..|...|+.++|...|++-.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666677777777777766543
No 304
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=80.96 E-value=3 Score=25.29 Aligned_cols=32 Identities=3% Similarity=0.087 Sum_probs=18.0
Q ss_pred CCCChhHHHHHhhhccCCCchhHHHHHHHHHh
Q 045063 22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTR 53 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~ 53 (175)
...+.+.+.++++.++.++..+|..+..++-.
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 33445555566666665565666665555544
No 305
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=80.74 E-value=14 Score=25.18 Aligned_cols=54 Identities=7% Similarity=-0.150 Sum_probs=31.3
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+.+..-..++..+...++.-.|.+++..+.+.+..++..|.--.|+.+.+.|-+
T Consensus 23 R~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 23 RLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344445556666655555666666666666666555655544455555555543
No 306
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.67 E-value=11 Score=26.09 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=35.9
Q ss_pred hcCCCchhHHHHHHHHHH-hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 87 SALPAPERGKQVHALMIK-GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
....+.+......+...+ ....|+..+|..++.++...|+.++|.+...++.
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 355555555555555443 2356888888888888888888888888777765
No 307
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.43 E-value=30 Score=28.16 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=79.8
Q ss_pred HHHHHhCCCcchHHHHHHHHHhcC-CCCC--Hh-h----HHHHHH-HHhcCCCchhHHHHHHHHHHhCCCcchH--HHHH
Q 045063 48 LFSYTRSRNFPATWALFCYMHSTC-LNLT--AY-T----FTPVLG-ACSALPAPERGKQVHALMIKGGTDSEPV--VKTA 116 (175)
Q Consensus 48 i~~~~~~g~~~~a~~l~~~m~~~~-~~~~--~~-t----~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ 116 (175)
+-+-.-.|+..+|++-..+|++.- -.|. .. . ...++- .|...+..+.|+.-|....+.--+.|.. .-..
T Consensus 330 v~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nln 409 (629)
T KOG2300|consen 330 VMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLN 409 (629)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 333344699999999999998862 2233 11 2 222222 2345677888887777666543334443 3356
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCchhHHH--------HHHHH--HhcCChHHHHHHHHHHH
Q 045063 117 LMDMYSKYGLLGESVEAFKEIEFKDVVTWNA--------LLSSF--LRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--------li~~~--~~~g~~~~a~~~~~~m~ 169 (175)
+.-.|.+.|+-+.-.++.+.+..+|..++.. ++.|+ ...+++.+|...++|-.
T Consensus 410 lAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 410 LAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7788999999999999999988776555432 23332 36788999988887743
No 308
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.25 E-value=28 Score=27.68 Aligned_cols=149 Identities=10% Similarity=-0.036 Sum_probs=92.6
Q ss_pred hcCCCChhHHHHHhhhccC-CCchhHHHHHHHHHh--CCCcchHHHHHHHHHhcCCCCCHhhHHH---H----------H
Q 045063 20 DALPKRYVYTHQVFDEISH-GDLSSLNSQLFSYTR--SRNFPATWALFCYMHSTCLNLTAYTFTP---V----------L 83 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~-~~~~~~~~li~~~~~--~g~~~~a~~l~~~m~~~~~~~~~~t~~~---l----------l 83 (175)
+.-.|+.+.|.+.--...+ ..+..+..++...|- .++.+.|..-|.+-++ +.|+...-.. . -
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~g 256 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERG 256 (486)
T ss_pred hhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhh
Confidence 3345666666665444332 344455666655443 4666777777776543 3343322111 1 1
Q ss_pred HHHhcCCCchhHHHHHHHHHH---hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC-chhHHHHHHH--HHhcCC
Q 045063 84 GACSALPAPERGKQVHALMIK---GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD-VVTWNALLSS--FLRHGL 157 (175)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~--~~~~g~ 157 (175)
+-..+.|.+..|.+.|.+-+. .+..|+...|-....+..+.|+.++|...=++...-| ..++..+..+ +.-.++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 334677889999999988874 2456677788888888889999999887776655544 3455555544 335578
Q ss_pred hHHHHHHHHHHHh
Q 045063 158 AKEAFGVFQAMTR 170 (175)
Q Consensus 158 ~~~a~~~~~~m~~ 170 (175)
|++|++-|++..+
T Consensus 337 ~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777544
No 309
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=80.03 E-value=3.6 Score=30.86 Aligned_cols=44 Identities=14% Similarity=0.096 Sum_probs=33.7
Q ss_pred Cchh-HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHH
Q 045063 40 DLSS-LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVL 83 (175)
Q Consensus 40 ~~~~-~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll 83 (175)
|+.+ ||.-|..-.+.||++.|+++.+|.++.|+.--..||---+
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4444 6899999999999999999999999888865555554443
No 310
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.01 E-value=12 Score=23.40 Aligned_cols=75 Identities=7% Similarity=0.045 Sum_probs=45.8
Q ss_pred HHHHHHHHHhCCCcc--hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFP--ATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 44 ~~~li~~~~~~g~~~--~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
|+.=-..|....+++ +..+-+...-...+.|+.....+.+.+|.+.+++..|..+++-.+.. +.+....|..+++
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 333334444433333 44555555555678899999999999999999999999999988743 3334447776664
No 311
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=79.78 E-value=6 Score=24.70 Aligned_cols=84 Identities=8% Similarity=-0.035 Sum_probs=52.2
Q ss_pred CChhHHHHHhhhccC-CCchhHHHHH--HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063 24 KRYVYTHQVFDEISH-GDLSSLNSQL--FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHA 100 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~-~~~~~~~~li--~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~ 100 (175)
+..++|..+-+.+.. ++..-...|| +++...|++++|+.+.+.+ ..||...|..|-.+ +.|-.+....-+-
T Consensus 19 HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~ 92 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLN 92 (115)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHH
Confidence 345677777776653 2223344444 5666788999998888776 46888877776433 5566666666666
Q ss_pred HHHHhCCCcchHHH
Q 045063 101 LMIKGGTDSEPVVK 114 (175)
Q Consensus 101 ~m~~~~~~~~~~~~ 114 (175)
+|..+| .|....|
T Consensus 93 rla~sg-~p~lq~F 105 (115)
T TIGR02508 93 RLAASG-DPRLQTF 105 (115)
T ss_pred HHHhCC-CHHHHHH
Confidence 666554 3444443
No 312
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=78.06 E-value=13 Score=31.38 Aligned_cols=78 Identities=8% Similarity=-0.025 Sum_probs=41.5
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhHHH---HHHHHHHhCCCcchHHHHHHHHH
Q 045063 46 SQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERGKQ---VHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a~~---~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
+|+++|..+|++..+.++++..... |=+.-...+|.-++...+.|.++...- .-+.+.+..+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6667777777777777777666432 333334456666666666665543221 11111122344456666666655
Q ss_pred HHh
Q 045063 121 YSK 123 (175)
Q Consensus 121 ~~~ 123 (175)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 313
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.80 E-value=26 Score=26.27 Aligned_cols=146 Identities=10% Similarity=0.122 Sum_probs=95.4
Q ss_pred CCCChhHHHHHhhhccC--C-----CchhHHHHHHHHHhCCCcchHHHHHHHHHh---cCCCC--CHhhHHHHHHHHhcC
Q 045063 22 LPKRYVYTHQVFDEISH--G-----DLSSLNSQLFSYTRSRNFPATWALFCYMHS---TCLNL--TAYTFTPVLGACSAL 89 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~--~~~t~~~ll~~~~~~ 89 (175)
+...+++|..-|.+..+ + +.-...-+|..+.+.|++++.+..|.+|.. +.+.. +..+.|++++..+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 45688999999988653 2 334456788999999999999999999863 33333 345889999988877
Q ss_pred CCchhHHHHHHHHHHh-CCCcchH----HHHHHHHHHHhcCChHHHHHHHHhccCC--------C-------chhHHHHH
Q 045063 90 PAPERGKQVHALMIKG-GTDSEPV----VKTALMDMYSKYGLLGESVEAFKEIEFK--------D-------VVTWNALL 149 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~-~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~-------~~~~~~li 149 (175)
...+....+++...+. .-..+.. |-+-|-..|...|.+.+...+++++.+. | ..+|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 7777666666655432 1122322 3355667777888888888888776511 1 23566666
Q ss_pred HHHHhcCChHHHHHHHHH
Q 045063 150 SSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~ 167 (175)
..|....+-.+-..++++
T Consensus 199 QmYT~qKnNKkLK~lYeq 216 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQ 216 (440)
T ss_pred hhhhhhcccHHHHHHHHH
Confidence 666655554444444443
No 314
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.77 E-value=5.3 Score=32.89 Aligned_cols=86 Identities=3% Similarity=-0.118 Sum_probs=34.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
.+..|...| ......++.+.+-++-..-.-++..|.+.|..+.|.++.+.+-..-+ ...-|..-+..+.+.++...+
T Consensus 381 yL~~c~~~g-~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v 457 (566)
T PF07575_consen 381 YLSSCPDEG-RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLV 457 (566)
T ss_dssp HHHS-SSS--HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------
T ss_pred HHHHCChhh-HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHH
Confidence 333344344 44444455555444444456666777777777777777766633322 234566667777777776666
Q ss_pred HHHHHHHHH
Q 045063 96 KQVHALMIK 104 (175)
Q Consensus 96 ~~~~~~m~~ 104 (175)
..+...+.+
T Consensus 458 ~~i~~~ll~ 466 (566)
T PF07575_consen 458 TRIADRLLE 466 (566)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 666555553
No 315
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.68 E-value=21 Score=30.44 Aligned_cols=88 Identities=9% Similarity=0.023 Sum_probs=47.6
Q ss_pred CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHH
Q 045063 71 CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS 150 (175)
Q Consensus 71 ~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~ 150 (175)
|.....-|.+-.+.-+...|...+|.++-.+.+ -||-..|--=+.+++..+++++-+++-+.++. ..-|.-...
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHH
Confidence 333444455555666666666666666654442 35666666666666666777666666665443 223333334
Q ss_pred HHHhcCChHHHHHH
Q 045063 151 SFLRHGLAKEAFGV 164 (175)
Q Consensus 151 ~~~~~g~~~~a~~~ 164 (175)
.|.+.|+.++|..+
T Consensus 753 ~c~~~~n~~EA~KY 766 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKY 766 (829)
T ss_pred HHHhcccHHHHhhh
Confidence 44444444444433
No 316
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.29 E-value=16 Score=25.31 Aligned_cols=53 Identities=11% Similarity=-0.112 Sum_probs=37.5
Q ss_pred HHHHHhcCChHHHHHHHHhcc-----CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 118 MDMYSKYGLLGESVEAFKEIE-----FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+.......+.+......+... .|+..+|..++..+...|+.++|.++..++..
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333335555444443333332 68999999999999999999999999888753
No 317
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=76.83 E-value=18 Score=28.47 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCCCHh---hHHHHHHHHhcCCCchhHHHHHH----------------------------------HHHH
Q 045063 62 ALFCYMHSTCLNLTAY---TFTPVLGACSALPAPERGKQVHA----------------------------------LMIK 104 (175)
Q Consensus 62 ~l~~~m~~~~~~~~~~---t~~~ll~~~~~~~~~~~a~~~~~----------------------------------~m~~ 104 (175)
-+++.+.+.|+.|+.. +-.+++.++...+..++..+++. .+.+
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~ 179 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDGIDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQRLLR 179 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccchhhhhhhhhccccccccccccccchHHHHHHHHHc
Confidence 3455566678888765 45555555555554444444443 1222
Q ss_pred hCCCcchHHHHHHHHHHHhcCChHHHHH--------------------HHHhccCCCchhHHHHHHHHHhcCChH
Q 045063 105 GGTDSEPVVKTALMDMYSKYGLLGESVE--------------------AFKEIEFKDVVTWNALLSSFLRHGLAK 159 (175)
Q Consensus 105 ~~~~~~~~~~~~li~~~~~~g~~~~a~~--------------------~~~~m~~~~~~~~~~li~~~~~~g~~~ 159 (175)
.|.-.|...+...+..+...-.+++|.+ +++....||+.+|.++...++--|-+.
T Consensus 180 ~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 180 EGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred CCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 3434455555555555554555666653 222233578899999988877555443
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.80 E-value=30 Score=26.10 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhccCC-------CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 111 PVVKTALMDMYSKYGLLGESVEAFKEIEFK-------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
..+|..+...+.+.|.++.|...+..+... +....-.-.+-.-..|+..+|...+++..+.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 346777777777888888888777776642 2333444455666777888888877777653
No 319
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=76.66 E-value=13 Score=21.78 Aligned_cols=80 Identities=11% Similarity=0.081 Sum_probs=34.3
Q ss_pred hcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcCCCchhHH
Q 045063 20 DALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSALPAPERGK 96 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~~~~~~a~ 96 (175)
.++.|+++.+..+++.-...+. -.+ .+...+..|+ .++++.+.+.|..++.. -++.+..+ +..|. .
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~-~~~-~l~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~----~ 72 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL-GNT-ALHYAAENGN----LEIVKLLLENGADINSQDKNGNTALHYA-AENGN----L 72 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS-SSB-HHHHHHHTTT----HHHHHHHHHTTTCTT-BSTTSSBHHHHH-HHTTH----H
T ss_pred HHHcCCHHHHHHHHHCcCCCCC-CCC-HHHHHHHcCC----HHHHHHHHHhcccccccCCCCCCHHHHH-HHcCC----H
Confidence 4456666666666663332232 112 3333334444 34444444455555543 23333333 33333 2
Q ss_pred HHHHHHHHhCCCcc
Q 045063 97 QVHALMIKGGTDSE 110 (175)
Q Consensus 97 ~~~~~m~~~~~~~~ 110 (175)
++.+.+.+.|..++
T Consensus 73 ~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 73 EIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHTTT-TT
T ss_pred HHHHHHHHcCCCCC
Confidence 34444445555444
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.22 E-value=9.8 Score=25.53 Aligned_cols=54 Identities=9% Similarity=0.130 Sum_probs=38.5
Q ss_pred hhhhhcCCCChhHHHHHhhhcc--CC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEIS--HG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTC 71 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~--~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 71 (175)
+++.-...++++++..+++-|. .| ...+|.-.| +...|++.+|+.+|.+..+.+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 3444455889999999998875 34 344444443 557899999999999987764
No 321
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.99 E-value=35 Score=26.51 Aligned_cols=114 Identities=9% Similarity=-0.057 Sum_probs=69.5
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh---CCCcchHHHHHHHHHHHhcCChHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG---GTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
..|.+.+|-..+++..+. .+.|..++.-.=+++.-.|+.......+++..-. +++-....-..+..+...+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456667777777776655 5566667777777788888777777777766532 222223333445555567888888
Q ss_pred HHHHHHhccCCC-chhHH--HHHHHHHhcCChHHHHHHHHH
Q 045063 130 SVEAFKEIEFKD-VVTWN--ALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 130 a~~~~~~m~~~~-~~~~~--~li~~~~~~g~~~~a~~~~~~ 167 (175)
|++.-++-.+-| ...|. ++-..+--.|++.++.+...+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 888777755432 22333 333333456777777766543
No 322
>PRK13342 recombination factor protein RarA; Reviewed
Probab=75.36 E-value=28 Score=27.42 Aligned_cols=31 Identities=13% Similarity=0.068 Sum_probs=20.6
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHhcccCC
Q 045063 145 WNALLSSFLR---HGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 145 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p 175 (175)
+.-+++++.+ .++.+.|+.++..|.+.|..|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~ 263 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDP 263 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCH
Confidence 3444444444 477888888888888877554
No 323
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.13 E-value=46 Score=27.54 Aligned_cols=97 Identities=10% Similarity=0.023 Sum_probs=41.9
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh-cCCCchhHHHHHHHHHHh-CCC-cchHHHHHHHHHHHhcCChHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS-ALPAPERGKQVHALMIKG-GTD-SEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~-~~~~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~~~g~~~~ 129 (175)
+.|..+.+.++|++-... ++-+.--|...+.-+. ..|+++..+..|+..+.. |.. .+...|...|..-...+....
T Consensus 91 klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 344555555555554333 3333334444433332 234444444444444432 211 122344555554445555555
Q ss_pred HHHHHHhccCCCchhHHHHHH
Q 045063 130 SVEAFKEIEFKDVVTWNALLS 150 (175)
Q Consensus 130 a~~~~~~m~~~~~~~~~~li~ 150 (175)
...+++...+-....|+....
T Consensus 170 v~~iyeRileiP~~~~~~~f~ 190 (577)
T KOG1258|consen 170 VANIYERILEIPLHQLNRHFD 190 (577)
T ss_pred HHHHHHHHHhhhhhHhHHHHH
Confidence 555555544443333443333
No 324
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=75.00 E-value=27 Score=26.57 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhc----------CChHHHHHH
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRH----------GLAKEAFGV 164 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~----------g~~~~a~~~ 164 (175)
-.++|..|...++.|.-..|.-+.-.+...=.+.+..++|+.+.. |..-|..|+..||.. |++....++
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkL 340 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-DPQRFDFLLYICCSMLILVRERILEGDFTVNMKL 340 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 357777888778888888888887778888888888888887652 222266666655543 566665555
Q ss_pred HH
Q 045063 165 FQ 166 (175)
Q Consensus 165 ~~ 166 (175)
++
T Consensus 341 LQ 342 (370)
T KOG4567|consen 341 LQ 342 (370)
T ss_pred Hh
Confidence 54
No 325
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=74.73 E-value=14 Score=23.11 Aligned_cols=47 Identities=9% Similarity=-0.046 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
.++..+.+.+..-.|.++++++.+.+..++..|.--.|+.+.+.|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555556666777777776666666666555556666666543
No 326
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=74.49 E-value=22 Score=23.57 Aligned_cols=87 Identities=9% Similarity=-0.028 Sum_probs=61.2
Q ss_pred HHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC----CCchhHHHH---HHHHHhcCC
Q 045063 85 ACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF----KDVVTWNAL---LSSFLRHGL 157 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~l---i~~~~~~g~ 157 (175)
+.+..|+++.|.+.|.+.+.. .+-....||.-..+|.-.|+.++|.+-+++..+ +.-..+.+. -.-|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 467889999999999998764 345677999999999999999999888877652 221112222 223556677
Q ss_pred hHHHHHHHHHHHhcc
Q 045063 158 AKEAFGVFQAMTRER 172 (175)
Q Consensus 158 ~~~a~~~~~~m~~~g 172 (175)
-+.|..-|+.--+-|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777776554433
No 327
>PF13934 ELYS: Nuclear pore complex assembly
Probab=73.92 E-value=30 Score=24.86 Aligned_cols=105 Identities=14% Similarity=0.017 Sum_probs=65.7
Q ss_pred hHHHHHHHHHhC--CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 43 SLNSQLFSYTRS--RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 43 ~~~~li~~~~~~--g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
.|...+.+++.. +++++|.+.+.+ -.+.|+-.. -++.++...++.+.|.++++...-.. .+....+.++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 478888888875 555666666532 123233222 47777888899999999887643211 112223333334
Q ss_pred HHhcCChHHHHHHHHhccCCC-chhHHHHHHHHHhc
Q 045063 121 YSKYGLLGESVEAFKEIEFKD-VVTWNALLSSFLRH 155 (175)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~~~~~~ 155 (175)
..+|.+.+|+.+.+...++. ...|..++..+...
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 67789999998888766542 45777777777733
No 328
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=73.45 E-value=12 Score=28.68 Aligned_cols=78 Identities=6% Similarity=-0.037 Sum_probs=48.8
Q ss_pred hhhhhcCCCChhHHHHHhhhcc-------CCCchhH--HHHHHHHHhCCCcchHHHHHHHHHh-----cCCCCCHh-hHH
Q 045063 16 ISIADALPKRYVYTHQVFDEIS-------HGDLSSL--NSQLFSYTRSRNFPATWALFCYMHS-----TCLNLTAY-TFT 80 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~-------~~~~~~~--~~li~~~~~~g~~~~a~~l~~~m~~-----~~~~~~~~-t~~ 80 (175)
++...-+.++.++|.+..+++. +|+.+.| +-+..++...||..++.+++++.++ .+++|+.+ .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 5555566677888888877764 3566666 3344555567888888888888766 57777665 455
Q ss_pred HHHHHHh-cCCCch
Q 045063 81 PVLGACS-ALPAPE 93 (175)
Q Consensus 81 ~ll~~~~-~~~~~~ 93 (175)
.+-.-|. +.|++.
T Consensus 161 ~lssqYyk~~~d~a 174 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHHhHH
Confidence 4433332 344443
No 329
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.12 E-value=6.6 Score=16.87 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.|..+-..+...|+++.|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666667777777777777776554
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.47 E-value=18 Score=27.30 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 113 VKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+++....+|..+|.+.+|.++-+.... | +...|-.|+..+...|+--++..-++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 455556667777777777776666542 2 5556667777777777755555555554
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.10 E-value=15 Score=29.75 Aligned_cols=87 Identities=11% Similarity=0.121 Sum_probs=59.5
Q ss_pred HHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 50 SYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 50 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
.+...|+++.++......... +-....+-.+++....+.|++++|..+-+.|....+. +....+.-.-..-..|.+|+
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHH
Confidence 345678888888888776444 3345668888888888888888888888888766553 33333333333445677788
Q ss_pred HHHHHHhcc
Q 045063 130 SVEAFKEIE 138 (175)
Q Consensus 130 a~~~~~~m~ 138 (175)
+.--|++..
T Consensus 410 ~~~~wk~~~ 418 (831)
T PRK15180 410 SYHYWKRVL 418 (831)
T ss_pred HHHHHHHHh
Confidence 877777654
No 332
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=71.57 E-value=25 Score=27.92 Aligned_cols=116 Identities=9% Similarity=-0.048 Sum_probs=74.8
Q ss_pred cCCCChhHHHHHhhhccCCCchh---------------HHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCCHhhHHHH
Q 045063 21 ALPKRYVYTHQVFDEISHGDLSS---------------LNSQLFSYTRSRNFPATWALFCYMHST---CLNLTAYTFTPV 82 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~~~~~~---------------~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~t~~~l 82 (175)
.-.++.+.+...|.+...-|... |..=-+-..+.|.+..|.+.|.+-+.. ..+|++.-|...
T Consensus 214 yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 34577888888888865322111 222223345789999999999998643 456666677777
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 83 LGACSALPAPERGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
-....+.|++++|..--.+..+ +.+. +..+-.-..++...+++++|.+-|+...
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778889999988877555433 2211 1233333356666778888887777654
No 333
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=71.22 E-value=33 Score=27.93 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=53.8
Q ss_pred HHhcCCCCCHh---hHHHHHHHHhcCCCchhHHHHHHHHHHhCC---CcchHHHHHHHHHHHhcCChHHHHHHHHhcc--
Q 045063 67 MHSTCLNLTAY---TFTPVLGACSALPAPERGKQVHALMIKGGT---DSEPVVKTALMDMYSKYGLLGESVEAFKEIE-- 138 (175)
Q Consensus 67 m~~~~~~~~~~---t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-- 138 (175)
..++++-|+.. +-.+++.+......-|+-.+++........ .-|..-+...+.-|...|...+...+..-|.
T Consensus 196 L~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~~~~~ 275 (543)
T KOG2214|consen 196 LLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACVMKKR 275 (543)
T ss_pred HHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33456667664 455556666666666666666655443222 3333345555666666665544333322221
Q ss_pred -------------------------------------CCCchhHHHHHHHHHhcCChHH
Q 045063 139 -------------------------------------FKDVVTWNALLSSFLRHGLAKE 160 (175)
Q Consensus 139 -------------------------------------~~~~~~~~~li~~~~~~g~~~~ 160 (175)
.||+.+|.++..+|.--|-++.
T Consensus 276 ~~~lTFqEAY~rTGrIlNItV~p~s~~e~P~lLNylTaPnVLIWSAV~aScs~pgif~~ 334 (543)
T KOG2214|consen 276 LGNLTFQEAYDRTGRILNIVVPPSSKSEPPRLLNYLTAPNVLIWSAVCASCSVPGIFES 334 (543)
T ss_pred hcchhHHHHHHhhCceEEEEECccccCCChhHhhccCCCceehhHHHHHhcccccccCc
Confidence 3689999999999887775443
No 334
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=70.49 E-value=58 Score=26.63 Aligned_cols=94 Identities=10% Similarity=0.042 Sum_probs=59.8
Q ss_pred CCCCHhhH-HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH--hcCChHHHHHHHHhcc---CCCchhH
Q 045063 72 LNLTAYTF-TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS--KYGLLGESVEAFKEIE---FKDVVTW 145 (175)
Q Consensus 72 ~~~~~~t~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~---~~~~~~~ 145 (175)
..|+..|+ +.+++.+-+.+..+.|+..+..+... .+|+...|.-+|..-. .+-+...+.+.++.+. ..|+..|
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLW 533 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHH
Confidence 55666654 34566777777788888887777654 4566677777764432 2223666677777665 3467777
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 045063 146 NALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~ 166 (175)
--.+.-=...|..+.+-+++-
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ 554 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYW 554 (568)
T ss_pred HHHHHhhccCCCcccccHHHH
Confidence 766666566777776666543
No 335
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.48 E-value=14 Score=28.63 Aligned_cols=76 Identities=14% Similarity=0.059 Sum_probs=37.3
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHH
Q 045063 86 CSALPAPERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
|.+.|.+++|...|..-.. ..| |.+++..-..+|.+...+..|+.--.... ..-...+.+|.|.+....+++.
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai----aLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI----ALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH----HhhHHHHHHHHHHHHHHHHHhh
Confidence 4455666666666655433 234 55666666666666666655433222111 1112345555555544444444
Q ss_pred HHH
Q 045063 165 FQA 167 (175)
Q Consensus 165 ~~~ 167 (175)
..|
T Consensus 181 ~~E 183 (536)
T KOG4648|consen 181 NME 183 (536)
T ss_pred HHH
Confidence 433
No 336
>PF13934 ELYS: Nuclear pore complex assembly
Probab=69.20 E-value=31 Score=24.83 Aligned_cols=94 Identities=10% Similarity=-0.027 Sum_probs=55.4
Q ss_pred CCChhHHHHHhhhccCCCc-hhH-HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063 23 PKRYVYTHQVFDEISHGDL-SSL-NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHA 100 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~~~~-~~~-~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~ 100 (175)
.++++.|.+.+ ..|.. .+| .-++.++...|+.+.|+..+..+....- +...-..++.. ...+.+.+|..+-+
T Consensus 91 ~~~~~~A~~~L---~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 91 HGDFEEALELL---SHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hHhHHHHHHHh---CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 36666666665 44433 222 3588888888999999998888633222 22233333444 55578888887766
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcC
Q 045063 101 LMIKGGTDSEPVVKTALMDMYSKYG 125 (175)
Q Consensus 101 ~m~~~~~~~~~~~~~~li~~~~~~g 125 (175)
..... -....+..++.......
T Consensus 165 ~~~~~---~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 165 SYPDE---LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred hCchh---hhHHHHHHHHHHHHHHh
Confidence 55431 11446677776666433
No 337
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=69.17 E-value=40 Score=24.21 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=60.3
Q ss_pred HHHHhCCCcchHHHHHHHHHhcCCCCCHh----hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063 49 FSYTRSRNFPATWALFCYMHSTCLNLTAY----TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY 124 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 124 (175)
+-+.++|++++|.+-|.+.+..-...... .|..--.++.+.+.++.|..--...++.+. ......---..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 45678899999999999987763322222 333334555666777776666555555331 1223334445788888
Q ss_pred CChHHHHHHHHhccCCCch
Q 045063 125 GLLGESVEAFKEIEFKDVV 143 (175)
Q Consensus 125 g~~~~a~~~~~~m~~~~~~ 143 (175)
.++++|.+-++.+.+.|..
T Consensus 182 ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHHhCcc
Confidence 9999999998888755443
No 338
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=69.10 E-value=15 Score=23.23 Aligned_cols=46 Identities=9% Similarity=-0.047 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
..++..+.+.+.+-.|.++++.+.+.+..++..|.=-.|+.+.+.|
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3445555555555566666666655555555544434444444444
No 339
>PHA02875 ankyrin repeat protein; Provisional
Probab=69.07 E-value=53 Score=25.61 Aligned_cols=21 Identities=0% Similarity=-0.314 Sum_probs=12.5
Q ss_pred hhhhhcCCCChhHHHHHhhhc
Q 045063 16 ISIADALPKRYVYTHQVFDEI 36 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~ 36 (175)
.+...++.|+.+.+..+++.-
T Consensus 38 pL~~A~~~~~~~~v~~Ll~~g 58 (413)
T PHA02875 38 PIKLAMKFRDSEAIKLLMKHG 58 (413)
T ss_pred HHHHHHHcCCHHHHHHHHhCC
Confidence 445555667776666665543
No 340
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=68.78 E-value=31 Score=22.91 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=38.7
Q ss_pred HHHhCCCcchHHHHHHHHHhcCC--CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063 50 SYTRSRNFPATWALFCYMHSTCL--NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL 127 (175)
Q Consensus 50 ~~~~~g~~~~a~~l~~~m~~~~~--~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 127 (175)
++...|+++.|...|.+...... ......+......+...++.+.+...+....+.........+..+-..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 44455555555555555522110 0112222222333344445555555555554421111234455555555555555
Q ss_pred HHHHHHHHhcc
Q 045063 128 GESVEAFKEIE 138 (175)
Q Consensus 128 ~~a~~~~~~m~ 138 (175)
+.|...+....
T Consensus 219 ~~a~~~~~~~~ 229 (291)
T COG0457 219 EEALEYYEKAL 229 (291)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 341
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=68.68 E-value=58 Score=25.91 Aligned_cols=124 Identities=11% Similarity=-0.016 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhC--CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh--cCCCchhHHHHHHHHHHhCCCcchH--HHHH
Q 045063 43 SLNSQLFSYTRS--RNFPATWALFCYMHSTCLNLTAYTFTPVLGACS--ALPAPERGKQVHALMIKGGTDSEPV--VKTA 116 (175)
Q Consensus 43 ~~~~li~~~~~~--g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ 116 (175)
.|..|-.++... |+-..|.++-.+-.+. +.-|..-...++.+.. -.|+.+.|++-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 355555555543 5555565554443222 3344445555665554 357788888888887652 3332 2344
Q ss_pred HHHHHHhcCChHHHHHHHHhccCC--C-chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 117 LMDMYSKYGLLGESVEAFKEIEFK--D-VVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
|.-..-+.|+.+.|...-+.--+. . .=.|.+.+...+..|+++.|+++++.-.+
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 444446777777777766665432 2 22466778888888888888888776443
No 342
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=68.46 E-value=67 Score=26.53 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHhCCCcch
Q 045063 42 SSLNSQLFSYTRSRNFPA 59 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~ 59 (175)
..+..++++....|-.+.
T Consensus 341 ~~r~~~~Dal~~~GT~~a 358 (574)
T smart00638 341 KARRIFLDAVAQAGTPPA 358 (574)
T ss_pred HHHHHHHHHHHhcCCHHH
Confidence 445555555555555333
No 343
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.08 E-value=49 Score=24.88 Aligned_cols=83 Identities=12% Similarity=0.020 Sum_probs=57.2
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHHh----
Q 045063 83 LGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFLR---- 154 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~---- 154 (175)
|.+++..+++.++....-+--+.--+.-..+.---|-.|.|.|....+.++-..-. ..+..-|.++..-|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 78888999998888766554432112233444555667899999988877766654 3356678887776654
Q ss_pred -cCChHHHHHHH
Q 045063 155 -HGLAKEAFGVF 165 (175)
Q Consensus 155 -~g~~~~a~~~~ 165 (175)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 59999998876
No 344
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=68.00 E-value=6.3 Score=31.61 Aligned_cols=94 Identities=13% Similarity=0.067 Sum_probs=55.6
Q ss_pred ChhHHHHHhhhccC--CC----------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC---
Q 045063 25 RYVYTHQVFDEISH--GD----------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL--- 89 (175)
Q Consensus 25 ~~~~a~~~f~~~~~--~~----------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~--- 89 (175)
.-..-+++|+.+.- |. ..-|++|..|+.++-.+.+ ..+=.+|...|-.-+.+ +-+|.++
T Consensus 462 k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~-----im~~Gkht~~ 535 (650)
T KOG4334|consen 462 KQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEV-----IMILGKHTEE 535 (650)
T ss_pred cchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCcccee-----Eeeeccceee
Confidence 33445677777652 21 2348899999888755532 22223444333322222 2222222
Q ss_pred ---CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 045063 90 ---PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY 124 (175)
Q Consensus 90 ---~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 124 (175)
.+-..+.++-.+-+-..+.|++.+|.+|+..|++.
T Consensus 536 ~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 536 AECKNKRQGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred eeeechhHHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 24456666666666556899999999999999986
No 345
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=67.93 E-value=47 Score=24.58 Aligned_cols=149 Identities=11% Similarity=0.082 Sum_probs=87.7
Q ss_pred hhhhhcCCCChhHHHHH---hhhccC--CC-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH---
Q 045063 16 ISIADALPKRYVYTHQV---FDEISH--GD-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC--- 86 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~---f~~~~~--~~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~--- 86 (175)
++.+|...+..+...+. .+.+.. ++ ...|-.-|+.+.+.++.+++.+.+.+|... +......|..++...
T Consensus 90 La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l 168 (278)
T PF08631_consen 90 LANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQL 168 (278)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHH
Confidence 77788888777765554 444432 33 555666677777789999999999999887 333444555555555
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcchHHH--HHHHHHH---HhcC------ChHHHHHHHHhcc----CC-Cc--------
Q 045063 87 SALPAPERGKQVHALMIKGGTDSEPVVK--TALMDMY---SKYG------LLGESVEAFKEIE----FK-DV-------- 142 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~---~~~g------~~~~a~~~~~~m~----~~-~~-------- 142 (175)
... ..+.+...+..+....+.|....| ..++... .+.+ ..+...++++... .| +.
T Consensus 169 ~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~ 247 (278)
T PF08631_consen 169 AEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHT 247 (278)
T ss_pred Hhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 333 345666666776655455555311 1122111 1211 1455555555332 22 11
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 143 VTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
..|+. ...+.+.++++.|.++|+-
T Consensus 248 LLW~~-~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 248 LLWNK-GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHH-HHHHHhhcCHHHHHHHHHH
Confidence 23444 3346788999999999873
No 346
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=67.55 E-value=16 Score=22.73 Aligned_cols=21 Identities=5% Similarity=-0.046 Sum_probs=10.3
Q ss_pred HHHHHhcCCCchhHHHHHHHH
Q 045063 82 VLGACSALPAPERGKQVHALM 102 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m 102 (175)
++.-|...++.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444445666655555544
No 347
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=67.52 E-value=25 Score=21.22 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=19.8
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 97 QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
++|+.....|+..|...|..+++...-.=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444444555555555555555444444444444444444
No 348
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=67.48 E-value=12 Score=22.90 Aligned_cols=53 Identities=4% Similarity=-0.073 Sum_probs=23.5
Q ss_pred HHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 045063 30 HQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC 86 (175)
Q Consensus 30 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~ 86 (175)
..+++.+.+.++.+-.-.=...++....+.|..+++.....| ...|..+++++
T Consensus 26 ~~ilD~Ll~~~Vlt~ee~e~I~~~~t~~~qAr~Lld~l~~KG----~~A~~~F~~~L 78 (94)
T cd08329 26 LPILDSLLSANVITEQEYDVIKQKTQTPLQARELIDTVLVKG----NAAAEVFRNCL 78 (94)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhhh----HHHHHHHHHHH
Confidence 334444444444443333333333333455555555554443 33444444444
No 349
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.09 E-value=53 Score=24.93 Aligned_cols=121 Identities=6% Similarity=-0.009 Sum_probs=78.0
Q ss_pred HHHHhCCCcchHHHHHHHHHhcCCCCCHh-------hHHHHHHHHhcCCCchhHHHHHHHHHH----hCCCcchHHHHHH
Q 045063 49 FSYTRSRNFPATWALFCYMHSTCLNLTAY-------TFTPVLGACSALPAPERGKQVHALMIK----GGTDSEPVVKTAL 117 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-------t~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~l 117 (175)
+...+.+++++|...|.+....|+..+.. |..-+.+-+.+.|+.....++...... -.-+.......+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 34557788999999999999888887654 456677778888876555544443332 1223345577777
Q ss_pred HHHHHhcC-ChHHHHHHHHhccCC---------CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 118 MDMYSKYG-LLGESVEAFKEIEFK---------DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 118 i~~~~~~g-~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++.+.... .++....+.....+. -...=.-+|..+.+.|....|+.+.+.+.
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 77776543 455555555544311 11223457888999999999987765543
No 350
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=66.91 E-value=11 Score=19.95 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=19.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 149 LSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
|+.+...|--.+++.+.-++.+.|+.|
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnP 37 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNP 37 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCH
Confidence 445566677777777777888877776
No 351
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=66.75 E-value=53 Score=27.94 Aligned_cols=109 Identities=7% Similarity=0.001 Sum_probs=71.4
Q ss_pred hhcCCCChhHHHHHhh-------------hccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 045063 19 ADALPKRYVYTHQVFD-------------EISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA 85 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~-------------~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~ 85 (175)
.+..+|+.+.|..+.- ++...+..+...+-..+.+...+..|-++|..|-. -.++++-
T Consensus 712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVql 782 (1081)
T KOG1538|consen 712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQL 782 (1081)
T ss_pred HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhh
Confidence 3345566665555432 23333455555555566667788888899988721 2355666
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCcchH-----------HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 86 CSALPAPERGKQVHALMIKGGTDSEPV-----------VKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
-...+++++|.++-+...+ ..||+. -|..-=.+|-+.|+-.+|.++++++.
T Consensus 783 Hve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 783 HVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred eeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 7788899999988776654 345543 23444578889999999999999876
No 352
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=66.48 E-value=8.5 Score=18.45 Aligned_cols=25 Identities=8% Similarity=0.036 Sum_probs=17.8
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTAL 117 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~l 117 (175)
.++.|+.+|++... +.|++.+|-..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 35778888888876 45777777543
No 353
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=66.22 E-value=19 Score=25.38 Aligned_cols=98 Identities=11% Similarity=0.063 Sum_probs=62.5
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHH-HHhcCCCc--hhHHHHHHHHHHhCCCcchH--
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLG-ACSALPAP--ERGKQVHALMIKGGTDSEPV-- 112 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~-~~~~~~~~--~~a~~~~~~m~~~~~~~~~~-- 112 (175)
+++-++...-...+.|++++|.+-++++.+. .++--...|..+.. +++..+.. -+|..++..+... ..|+..
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL 106 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEEL 106 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHc
Confidence 4555666666677889999999999988654 23334456777776 66776644 4566666655543 344433
Q ss_pred --HHHHHHHHH--------------HhcCChHHHHHHHHhcc
Q 045063 113 --VKTALMDMY--------------SKYGLLGESVEAFKEIE 138 (175)
Q Consensus 113 --~~~~li~~~--------------~~~g~~~~a~~~~~~m~ 138 (175)
.+-..|.+. .+.|+++.|.++++-|.
T Consensus 107 ~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 107 GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFME 148 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 222233332 46789999999998886
No 354
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=66.08 E-value=28 Score=21.72 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 81 PVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
.+++.+...+.+-.|.++++.+.+.+..++..|.=-.++.+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4667777777888999999999988877777776666788888886554
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=65.92 E-value=39 Score=24.55 Aligned_cols=119 Identities=12% Similarity=-0.020 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh--CCCcchHHHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG--GTDSEPVVKTALMDM 120 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~ 120 (175)
|.+.-|+.+.+.+++.+|+.+..+=.+.+ +.|...-..+++-+|-.|++++|..=++-.-+. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44566788889999999999888865552 234456777889999999999998665555432 234445688888876
Q ss_pred HHhcCChHHHHHHHHhccCC-----CchhHHHHHHH-HH-hcCChHHHHHHHHHH
Q 045063 121 YSKYGLLGESVEAFKEIEFK-----DVVTWNALLSS-FL-RHGLAKEAFGVFQAM 168 (175)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~-~~-~~g~~~~a~~~~~~m 168 (175)
-.-. .++|.-=..| ....|-..|.+ .. +.+...+|.+-++|-
T Consensus 82 ea~R------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreq 130 (273)
T COG4455 82 EAAR------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQ 130 (273)
T ss_pred HHHH------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHH
Confidence 3321 3455544444 34456655544 33 444466666666664
No 356
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=65.51 E-value=13 Score=22.26 Aligned_cols=39 Identities=8% Similarity=-0.093 Sum_probs=22.7
Q ss_pred hcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcch
Q 045063 20 DALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPA 59 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 59 (175)
....|+.+.|..+++.++ ....+|..++.++-+.|...-
T Consensus 42 ~~~~G~~~aa~~Ll~~L~-r~~~Wf~~Fl~AL~~~~~~~L 80 (84)
T cd08789 42 ENNSGNIKAAWTLLDTLV-RRDNWLEPFLDALRECGLGHL 80 (84)
T ss_pred HhcCChHHHHHHHHHHHh-ccCChHHHHHHHHHHcCCHHH
Confidence 334566666666666666 555566666666666554433
No 357
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.47 E-value=1.1e+02 Score=27.92 Aligned_cols=51 Identities=16% Similarity=0.195 Sum_probs=29.7
Q ss_pred HHHHHhcCChHHHHHHHHhccCC-Cchh--HHHHHHHHHhcCChHHHHHHHHHH
Q 045063 118 MDMYSKYGLLGESVEAFKEIEFK-DVVT--WNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~-~~~~--~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+.+|-.+|++.+|..+-.++..+ |... =..|++-+...+++-+|-++..+-
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 45555566666666666555533 3222 255666677777777776666553
No 358
>PRK09687 putative lyase; Provisional
Probab=65.36 E-value=55 Score=24.41 Aligned_cols=31 Identities=10% Similarity=-0.062 Sum_probs=16.9
Q ss_pred cCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 138 EFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 138 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
..+|..+-..-+.++.+.|+ ..|...+-+..
T Consensus 202 ~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L 232 (280)
T PRK09687 202 QDKNEEIRIEAIIGLALRKD-KRVLSVLIKEL 232 (280)
T ss_pred cCCChHHHHHHHHHHHccCC-hhHHHHHHHHH
Confidence 34555566666666666666 34444444443
No 359
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.70 E-value=42 Score=22.84 Aligned_cols=48 Identities=13% Similarity=-0.062 Sum_probs=22.8
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
+.++++++..++..++- ++|... ++-..+ +.+.|++.+|..+++.+..
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhc
Confidence 34555555555555522 223222 333322 3445556666666555543
No 360
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=64.37 E-value=13 Score=21.49 Aligned_cols=38 Identities=8% Similarity=-0.123 Sum_probs=26.1
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
-.|+.+.+.+++++..+.|..|.......+..+..+.|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35777888888888877777777776666666655444
No 361
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=64.07 E-value=69 Score=25.13 Aligned_cols=92 Identities=14% Similarity=0.115 Sum_probs=57.5
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhcC-C-CCC-HhhHHHHHHHHhc---CCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 46 SQLFSYTRSRNFPATWALFCYMHSTC-L-NLT-AYTFTPVLGACSA---LPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m~~~~-~-~~~-~~t~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
.++-+|-...+++...++.+.+.... . .++ ...--..--++.+ .|+.++|..++..+....-.++..+|..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34446888899999999999996651 1 111 1111122233445 8899999999999665555677777766665
Q ss_pred HH----Hh-----cCChHHHHHHHHhc
Q 045063 120 MY----SK-----YGLLGESVEAFKEI 137 (175)
Q Consensus 120 ~~----~~-----~g~~~~a~~~~~~m 137 (175)
.| .. ....++|...+..-
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 55 22 22356666666654
No 362
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.05 E-value=13 Score=16.66 Aligned_cols=28 Identities=7% Similarity=0.042 Sum_probs=14.8
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+++.+..+|+++.+. ++-+...|...+.
T Consensus 2 ~~~~~r~i~e~~l~~-~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEK-FPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHH-CCCChHHHHHHHH
Confidence 455666666666653 2244555555443
No 363
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.02 E-value=64 Score=26.44 Aligned_cols=121 Identities=12% Similarity=0.046 Sum_probs=79.2
Q ss_pred HHHHHHHHHhCCCcchHH-HHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATW-ALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~-~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 122 (175)
-+.-|.--...|++..|- ++|...++..-.|+.+-.-+.+ +...|..+.+.+.+....+. +.....+-.+++...-
T Consensus 292 ~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~ 368 (831)
T PRK15180 292 ITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLH 368 (831)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhh
Confidence 344455555678887665 4555566666667776544444 56778899998888776543 4566778889999999
Q ss_pred hcCChHHHHHHHHhccCC-----CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 123 KYGLLGESVEAFKEIEFK-----DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+.|++++|...-+.|... .+++-.+ ..--..|-++++.-.++++.
T Consensus 369 ~l~r~~~a~s~a~~~l~~eie~~ei~~iaa--~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 369 GLARWREALSTAEMMLSNEIEDEEVLTVAA--GSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred chhhHHHHHHHHHHHhccccCChhheeeec--ccHHHHhHHHHHHHHHHHHh
Confidence 999999998888877632 2222111 11234456677777776654
No 364
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=63.85 E-value=21 Score=26.25 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=34.9
Q ss_pred cCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh
Q 045063 37 SHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS 87 (175)
Q Consensus 37 ~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~ 87 (175)
-+|....-..++..|. .+++++|.+++.+..+.|+.|.... +.++..+-
T Consensus 235 d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~K 283 (333)
T KOG0991|consen 235 DEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVVK 283 (333)
T ss_pred CCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHH
Confidence 3466666777777664 4689999999999999999887642 33444443
No 365
>PRK11906 transcriptional regulator; Provisional
Probab=63.68 E-value=77 Score=25.56 Aligned_cols=137 Identities=5% Similarity=-0.044 Sum_probs=79.2
Q ss_pred ChhHHHHHhhhcc---CCC---chhHHHHHHHHHhC-----C----CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063 25 RYVYTHQVFDEIS---HGD---LSSLNSQLFSYTRS-----R----NFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89 (175)
Q Consensus 25 ~~~~a~~~f~~~~---~~~---~~~~~~li~~~~~~-----g----~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~ 89 (175)
..+.|..+|++.. +-| ...|..+-.++... . +..+|.++-++..+.+ +-|...-..+-.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4466888898876 322 44455444444432 1 2234444444443331 12333444444444556
Q ss_pred CCchhHHHHHHHHHHhCCCcchH-HHHHHHHHHHhcCChHHHHHHHHhccC--C---CchhHHHHHHHHHhcCChHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPV-VKTALMDMYSKYGLLGESVEAFKEIEF--K---DVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~--~---~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
++.+.|..+|++... +.||.- +|-..--...-+|+.++|.+.++.-.+ | -..+--..|..|+.++ .+.|..
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 679999999998876 456543 444444445568999999999998543 2 2334445555666666 466666
Q ss_pred HH
Q 045063 164 VF 165 (175)
Q Consensus 164 ~~ 165 (175)
++
T Consensus 429 ~~ 430 (458)
T PRK11906 429 LY 430 (458)
T ss_pred HH
Confidence 54
No 366
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=63.61 E-value=22 Score=25.85 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccCC---------CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 113 VKTALMDMYSKYGLLGESVEAFKEIEFK---------DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
.--.+..-|.+.|++++|.++|+.+... ...+-..+..|+.+.|+.+..+.+--||.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3446668889999999999999998511 23445567888889999999888876664
No 367
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=63.53 E-value=13 Score=28.74 Aligned_cols=48 Identities=4% Similarity=-0.046 Sum_probs=35.0
Q ss_pred HHHHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCCchhHHHH
Q 045063 49 FSYTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALPAPERGKQV 98 (175)
Q Consensus 49 ~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~~~~a~~~ 98 (175)
+.|.+.|.+++|.+-|..-.. +.| |.+++..--.+|.+..++..|+.=
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHh
Confidence 457788999999999987532 445 777887777788887777655543
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.97 E-value=16 Score=21.60 Aligned_cols=46 Identities=2% Similarity=-0.095 Sum_probs=26.5
Q ss_pred hCCCcchHHHHHHHHHhcCCCC-CHh-hHHHHHHHHhcCCCchhHHHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNL-TAY-TFTPVLGACSALPAPERGKQV 98 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~-~~~-t~~~ll~~~~~~~~~~~a~~~ 98 (175)
..+..+.|+..|....+.-..+ +.. ++..++.+++..|+.++...+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777776665442222 222 666777777777766655543
No 369
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=62.22 E-value=29 Score=22.76 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 139 (175)
...-+..+....+.|+......-+.++.+.+|+..|.++|+.++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444455556778888888888888888888888888887763
No 370
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=61.93 E-value=77 Score=27.29 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 145 WNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
-.+++++ ++.++.+.|+.++.+|.+.|..|
T Consensus 262 Isa~~ks-irgsD~daAl~~la~ml~~Gedp 291 (725)
T PRK13341 262 ISAFIKS-LRGSDPDAALYWLARMVEAGEDP 291 (725)
T ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHcCCCH
Confidence 3344443 56788999999999999888654
No 371
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=61.87 E-value=51 Score=28.30 Aligned_cols=69 Identities=6% Similarity=-0.207 Sum_probs=40.2
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHhhHHHHHHH------HhcCCCchhHHHHHHHHHHhCC
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAYTFTPVLGA------CSALPAPERGKQVHALMIKGGT 107 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~------~~~~~~~~~a~~~~~~m~~~~~ 107 (175)
|....|..+-+.-.+.-.++.|...|-+-... |++.-...-+..-+. ..--|++++|+.+|-.+.++.+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 45567887777777777777777777766443 443222111111111 1223788888888887776543
No 372
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=60.95 E-value=19 Score=21.60 Aligned_cols=57 Identities=7% Similarity=0.064 Sum_probs=27.3
Q ss_pred HHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 30 HQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 30 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
..+++.+.+.++.+-.-.=..-.+..+.+.|..+.+..... ...+|.+..+++...|
T Consensus 17 ~~ild~L~~~gvlt~~~~e~I~~~~t~~~qa~~Lld~L~tr----G~~Af~~F~~aL~~~~ 73 (86)
T cd08323 17 SYIMDHMISDGVLTLDEEEKVKSKATQKEKAVMLINMILTK----DNHAYVSFYNALLHEG 73 (86)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHcCCChHHHHHHHHHHHHhc----CHHHHHHHHHHHHhcC
Confidence 34455555555444443333333444555555555555443 2344555555554444
No 373
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=60.14 E-value=67 Score=23.71 Aligned_cols=118 Identities=13% Similarity=0.017 Sum_probs=78.1
Q ss_pred hhhhcCCCChhHHHHHhhhccCC--CchhHHHHHHHHHhCCCcchHHHHHHHHHhc-C-CCCCHhhHHHHHHHHhcCCCc
Q 045063 17 SIADALPKRYVYTHQVFDEISHG--DLSSLNSQLFSYTRSRNFPATWALFCYMHST-C-LNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~-~~~~~~t~~~ll~~~~~~~~~ 92 (175)
|..-|-+|++|.|.+.++.++.. |....-..+.--|+-|.++..--++.++... + +........-+-+.+...|+.
T Consensus 17 l~~~CLNr~Fd~vL~~~R~~p~~emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCDi~nlal~~~k~ 96 (267)
T PF05476_consen 17 LYLQCLNREFDDVLAELRQIPVDEMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCDIGNLALHEGKY 96 (267)
T ss_pred HHHHHhhhhHHHHHHHHHcCcHhHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccChhHHHHHHHHHHhcCCC
Confidence 34556789999999999999853 7777788888888999999999999997544 2 233334455777777777765
Q ss_pred hhHHHHHHHHH---HhCCC-cch-----HHHHHHHHHHHhcCC----hHHHHHHH
Q 045063 93 ERGKQVHALMI---KGGTD-SEP-----VVKTALMDMYSKYGL----LGESVEAF 134 (175)
Q Consensus 93 ~~a~~~~~~m~---~~~~~-~~~-----~~~~~li~~~~~~g~----~~~a~~~~ 134 (175)
--..+++.... ..+.. +.. ..-.+=|++|++.-. +.+=+.+|
T Consensus 97 fip~ql~~hy~~~y~~~~~~~e~~~~~YeLlRikVE~FAkgt~~~t~F~EKWkvf 151 (267)
T PF05476_consen 97 FIPSQLYMHYQKFYGKGTSQPEWDQYEYELLRIKVESFAKGTMHKTTFREKWKVF 151 (267)
T ss_pred cCHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 55555544444 33321 221 234677888887543 44444444
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.12 E-value=92 Score=27.46 Aligned_cols=113 Identities=9% Similarity=0.019 Sum_probs=66.3
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcC--CCCC-HhhHHHHHHHHhcCCCc--hhHHHHHHHHHHhCCCcchHHHHH-
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTC--LNLT-AYTFTPVLGACSALPAP--ERGKQVHALMIKGGTDSEPVVKTA- 116 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~~~-~~t~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~- 116 (175)
-|..|+.-|...|++++|++++.+....- ..+. ..-+--++..+.+.+.. +...+.-++..+....-....++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48999999999999999999999986531 1111 11222355555555544 555555555544322111122222
Q ss_pred -----------HHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHHhc
Q 045063 117 -----------LMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFLRH 155 (175)
Q Consensus 117 -----------li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~ 155 (175)
-+-.|.+....+-+...++.+. ..+..-.+.++.-|+..
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 3345566666677777777765 23555667777766643
No 375
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=60.07 E-value=45 Score=21.66 Aligned_cols=112 Identities=5% Similarity=0.004 Sum_probs=68.6
Q ss_pred CChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHH---HHHHHHhc-------CCCch
Q 045063 24 KRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFT---PVLGACSA-------LPAPE 93 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~---~ll~~~~~-------~~~~~ 93 (175)
.+++-|..++.++...+ .+.-.++.+....-.-.++++..+.....-.|....-. .-++.|-. .+...
T Consensus 3 nNp~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VR 80 (126)
T PF10155_consen 3 NNPNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVR 80 (126)
T ss_pred CcHHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 46667777777765444 37777788888777778888888887765555443211 12333322 22334
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
..-.+++.+++.++.-....+..+=..+.+..+..+|..+|+.+
T Consensus 81 lvcvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 81 LVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred hHHHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 44456666666666555556666666666666777777777654
No 376
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=59.75 E-value=20 Score=22.29 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCCcchHHHHHHHH
Q 045063 45 NSQLFSYTRSRNFPATWALFCYM 67 (175)
Q Consensus 45 ~~li~~~~~~g~~~~a~~l~~~m 67 (175)
..+|..|...|+.++|..-+.++
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHh
Confidence 34555666667777777777665
No 377
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=59.66 E-value=53 Score=22.39 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=44.3
Q ss_pred HHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 67 MHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 67 m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
+++.|++++..=. .++..+......-.|.++++.+.+.+..++..|.=--|+.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4556887776533 5555555567788999999999998877777655555677777776554
No 378
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=59.35 E-value=49 Score=21.90 Aligned_cols=152 Identities=13% Similarity=0.031 Sum_probs=110.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHH-HHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLG-ACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~-~~~~~ 89 (175)
....+...+++..+...+..... .....+......+...++...+.+.+.........+. ........ .+...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 143 (291)
T COG0457 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGALYEL 143 (291)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHc
Confidence 66677788888888888887642 3555677777788888889999999999866544332 22222223 78899
Q ss_pred CCchhHHHHHHHHHHhCCCc----chHHHHHHHHHHHhcCChHHHHHHHHhccCC----CchhHHHHHHHHHhcCChHHH
Q 045063 90 PAPERGKQVHALMIKGGTDS----EPVVKTALMDMYSKYGLLGESVEAFKEIEFK----DVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~a 161 (175)
++.+.+...+.+... ..| ....+......+...++.+.+...+...... ....+..+-..+...++.+.+
T Consensus 144 ~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 144 GDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred CCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence 999999999999855 333 3345555555578899999999999887743 245688888888888888999
Q ss_pred HHHHHHHHh
Q 045063 162 FGVFQAMTR 170 (175)
Q Consensus 162 ~~~~~~m~~ 170 (175)
...+.....
T Consensus 222 ~~~~~~~~~ 230 (291)
T COG0457 222 LEYYEKALE 230 (291)
T ss_pred HHHHHHHHh
Confidence 888877654
No 379
>PRK11906 transcriptional regulator; Provisional
Probab=58.95 E-value=95 Score=25.07 Aligned_cols=109 Identities=13% Similarity=0.008 Sum_probs=69.6
Q ss_pred CCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHH
Q 045063 23 PKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQV 98 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~ 98 (175)
..+..+|.++-+...+ .|...-..+-.+..-.|+++.|..+|++... +.||.. +|...--.+.-.|+.++|.+.
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4445556666665543 3666666666666778889999999999854 445554 444444445667999999999
Q ss_pred HHHHHHhCCCcch---HHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 99 HALMIKGGTDSEP---VVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 99 ~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
+++-.+ ..|.. .+..-.|+.|+..+ .++|..++..
T Consensus 395 i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 998654 23433 34445556777666 4555555543
No 380
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=58.00 E-value=86 Score=24.24 Aligned_cols=132 Identities=13% Similarity=0.011 Sum_probs=80.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcch-HHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchh
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPA-TWALFCYMHSTCLNLTAYTFTPVLGACSALPAPER 94 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~-a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~ 94 (175)
+-+.++|.++-+.+..+-..++.-.......+..++....-.+. +..+.+..... ||......++.+.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 77788888888877777766766566667777777766643333 33444444444 888899999999998887777
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHH-HHHHhcCChHHHHHHHHhccCCC-chhHHHHHH
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALM-DMYSKYGLLGESVEAFKEIEFKD-VVTWNALLS 150 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~li~ 150 (175)
....+..+.......+..+..++. .++.-..+.+.+..+++..-..+ ...||.+..
T Consensus 249 ~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~qlfa 306 (340)
T PF12069_consen 249 VAILIDALLQSPRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQLFA 306 (340)
T ss_pred HHHHHHHHhcCcccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 777667776654444444333332 22222344555555555554332 444554433
No 381
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=57.91 E-value=17 Score=21.89 Aligned_cols=34 Identities=12% Similarity=0.130 Sum_probs=19.5
Q ss_pred CChhHHHHHhhhccC-CCchhHHHHHHHHHhCCCc
Q 045063 24 KRYVYTHQVFDEISH-GDLSSLNSQLFSYTRSRNF 57 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~-~~~~~~~~li~~~~~~g~~ 57 (175)
|+.+.|..+++.+.. .....|..++.++-+.|..
T Consensus 48 g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~ 82 (88)
T cd08812 48 GNIAAAEELLDRLERCDKPGWFQAFLDALRRTGND 82 (88)
T ss_pred ChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCc
Confidence 555666666666554 4555556666666555543
No 382
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=57.61 E-value=23 Score=21.01 Aligned_cols=27 Identities=7% Similarity=-0.087 Sum_probs=11.8
Q ss_pred ChhHHHHHhhhccCCCchhHHHHHHHH
Q 045063 25 RYVYTHQVFDEISHGDLSSLNSQLFSY 51 (175)
Q Consensus 25 ~~~~a~~~f~~~~~~~~~~~~~li~~~ 51 (175)
.-+.|+++++-++..+..+|..+.+++
T Consensus 44 ~~~kar~Lld~l~~kG~~A~~~F~~~L 70 (82)
T cd08330 44 NQEKMRKLFSFVRSWGASCKDIFYQIL 70 (82)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 334444444444444444444444444
No 383
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=57.48 E-value=80 Score=23.74 Aligned_cols=143 Identities=8% Similarity=0.021 Sum_probs=79.7
Q ss_pred hhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc---CCCC-CHhhHHHHHHHHhcCC-
Q 045063 18 IADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHST---CLNL-TAYTFTPVLGACSALP- 90 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~-~~~t~~~ll~~~~~~~- 90 (175)
.+.-+.|++|...+....... ++...|..+... +.|+.+++....+..... .+.+ ....|........+.-
T Consensus 6 eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~ 83 (352)
T PF02259_consen 6 EAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQ 83 (352)
T ss_pred HHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhH
Confidence 455577888887777777765 345555555544 777888887777776543 1111 1123333332222222
Q ss_pred --CchhHHHHH--------------HHHHH--hCCCcchHHHHHHHHHHHhcCChHHHHHHHH--hccCCCchhHHHHHH
Q 045063 91 --APERGKQVH--------------ALMIK--GGTDSEPVVKTALMDMYSKYGLLGESVEAFK--EIEFKDVVTWNALLS 150 (175)
Q Consensus 91 --~~~~a~~~~--------------~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--~m~~~~~~~~~~li~ 150 (175)
.++++..+. ....+ ..+.++..+|..++..-.- ++. .+......+|..+.+
T Consensus 84 L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~---------~l~~~~~~~~~~~~~l~~a~ 154 (352)
T PF02259_consen 84 LVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRL---------VLSLILLPEELAETWLKFAK 154 (352)
T ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH---------HHhcccchhHHHHHHHHHHH
Confidence 222222222 21221 1345666667666643221 111 222345668888999
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 045063 151 SFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.+.+.|+++.|...+.++...
T Consensus 155 ~aRk~g~~~~A~~~l~~~~~~ 175 (352)
T PF02259_consen 155 LARKAGNFQLALSALNRLFQL 175 (352)
T ss_pred HHHHCCCcHHHHHHHHHHhcc
Confidence 999999999999988887763
No 384
>PRK14700 recombination factor protein RarA; Provisional
Probab=57.39 E-value=83 Score=23.87 Aligned_cols=61 Identities=13% Similarity=0.015 Sum_probs=38.3
Q ss_pred HHHHHHhC---CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-----chhHHHHHHHHHHhCC
Q 045063 47 QLFSYTRS---RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-----PERGKQVHALMIKGGT 107 (175)
Q Consensus 47 li~~~~~~---g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~ 107 (175)
+|+++.|+ .|.+.|+--+.+|.+.|..|....--.++-+.-..|. ...|...++....-|+
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 46666653 5667777777777777777777766666666666652 3344455555555554
No 385
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.28 E-value=1.1e+02 Score=25.16 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=44.7
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-----------------CCCchhHHHHHHHHHhcCChHHHHHH
Q 045063 102 MIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-----------------FKDVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 102 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----------------~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
+.+.|+..+......++... .|+...|...++... ..+....-.++.+ ...|+.+.+..+
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~a-l~~~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEA-LAAKAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHH-HHcCCHHHHHHH
Confidence 33556666665555555442 477777777775432 1122333445555 455889999999
Q ss_pred HHHHHhcccCC
Q 045063 165 FQAMTRERVEF 175 (175)
Q Consensus 165 ~~~m~~~g~~p 175 (175)
+++|.+.|..|
T Consensus 268 ~~~l~~~g~~~ 278 (509)
T PRK14958 268 VTRLVEQGVDF 278 (509)
T ss_pred HHHHHHcCCCH
Confidence 99999988764
No 386
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.72 E-value=92 Score=24.18 Aligned_cols=87 Identities=10% Similarity=0.015 Sum_probs=58.8
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCCHhhHHHH--HHHHhcCCCchhHHHHHHHHHH-----hCCCcchH-
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHST---CLNLTAYTFTPV--LGACSALPAPERGKQVHALMIK-----GGTDSEPV- 112 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~~~t~~~l--l~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~- 112 (175)
.-.++...-+.++.++|++.++++.+. -=.|+.+.|... ..+....|+..+++.+++..++ .+++|++.
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 445556666677899999999999765 223566655444 4555678999999999999987 67877665
Q ss_pred HHHHHHH-HHHhcCChHHH
Q 045063 113 VKTALMD-MYSKYGLLGES 130 (175)
Q Consensus 113 ~~~~li~-~~~~~g~~~~a 130 (175)
.|..+-+ .|-+.|++...
T Consensus 158 ~fY~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFASY 176 (380)
T ss_pred hHHHHHHHHHHHHHhHHHH
Confidence 4444443 44445555543
No 387
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.33 E-value=57 Score=21.65 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH
Q 045063 62 ALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG 128 (175)
Q Consensus 62 ~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (175)
++...+++.|++++.. -..+++.+.+.++...|..+++.+.+.+...+..|-=.-++.+...|-+.
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEE
Confidence 3444556778877764 33567778888888999999999999877666654434456667766543
No 388
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.23 E-value=81 Score=23.42 Aligned_cols=121 Identities=9% Similarity=0.019 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHh--cCCCCCHh--hHHHHHHHHhcCCCchhHHHHHHHHHHh-------------
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHS--TCLNLTAY--TFTPVLGACSALPAPERGKQVHALMIKG------------- 105 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~--~~~~~~~~--t~~~ll~~~~~~~~~~~a~~~~~~m~~~------------- 105 (175)
.|+.-...|.++|..+.|-..+++.-+ .++.|+.. .|.--+...-..++...+.+++.....-
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a 172 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA 172 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence 367777788888888777766666422 24666653 4444444444444433333333322210
Q ss_pred ----C-------CCcch-HHHHHHHHHHHhcCChHHHHHHHHhc---c----CCCchhHHHHHHHHHhcCChHHHHHH
Q 045063 106 ----G-------TDSEP-VVKTALMDMYSKYGLLGESVEAFKEI---E----FKDVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 106 ----~-------~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m---~----~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
+ -.++. ..|-..|-.|.-..++-.|...++.- + ..|..+..-||.+| ..|+.+++..+
T Consensus 173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 0 01111 23444555555666777777777762 2 12566777777764 56666666554
No 389
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=55.45 E-value=43 Score=19.98 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHH
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a 161 (175)
..++..+.+.|+- +......+ -+.....+.+.++++.++.++...|....+++-..|..+-|
T Consensus 19 ~~v~~~L~~~~Vl-t~~~~e~I---~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF-TPDMIEEI---QAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC-CHHHHHHH---HcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3466666666542 22222222 23445677788888888888888888888888777765544
No 390
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=55.12 E-value=78 Score=25.66 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 045063 114 KTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVFQAMTRER 172 (175)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 172 (175)
...|+.-|.-.|+..+|.+.++++.-| ..+.+.+++.+.-+.|+-...+.++++.-..|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 567888889999999999999998876 56778888888888888777888887776555
No 391
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.96 E-value=1.2e+02 Score=25.11 Aligned_cols=149 Identities=9% Similarity=-0.008 Sum_probs=90.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
++..++.+.....++.+-.+|.. .+...|-.++.+|..+ ..+.-..++++..+..+ +.+.+.--+.-+...++-+
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yEkik~s 148 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYEKIKKS 148 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHHHhchh
Confidence 67777777777777666666653 5777788888888888 45778888887766544 4555555554455456667
Q ss_pred hHHHHHHHHHHhCCCc-----chHHHHHHHHHHHhcCChHHHHHHHHhccCC-----CchhHHHHHHHHHhcCChHHHHH
Q 045063 94 RGKQVHALMIKGGTDS-----EPVVKTALMDMYSKYGLLGESVEAFKEIEFK-----DVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
.+..+|.....+=++. =...|.-|+..- ..+.|.-.++...+... -.+.+.-+-.-|..+.++.+|.+
T Consensus 149 k~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~ 226 (711)
T COG1747 149 KAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIR 226 (711)
T ss_pred hHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHH
Confidence 7777766666442211 122555555432 23444444444444422 33445555556667777888888
Q ss_pred HHHHHH
Q 045063 164 VFQAMT 169 (175)
Q Consensus 164 ~~~~m~ 169 (175)
++..+.
T Consensus 227 Ilk~il 232 (711)
T COG1747 227 ILKHIL 232 (711)
T ss_pred HHHHHh
Confidence 777443
No 392
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=54.84 E-value=45 Score=20.11 Aligned_cols=62 Identities=6% Similarity=0.098 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHH
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a 161 (175)
..++..+.+.|+- +...+..+- +.....+.+.++++.++.++...|..+..++-..|..+-|
T Consensus 23 ~~v~~~L~~~gvl-t~~~~~~I~---~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~La 84 (90)
T cd08332 23 DELLIHLLQKDIL-TDSMAESIM---AKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEHLC 84 (90)
T ss_pred HHHHHHHHHcCCC-CHHHHHHHH---cCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHHHH
Confidence 3455555555542 222222222 2335667788888888888888888888887665554433
No 393
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=54.82 E-value=47 Score=20.31 Aligned_cols=31 Identities=13% Similarity=0.072 Sum_probs=16.1
Q ss_pred cCCCChhHHHHHhhhccCCCchhHHHHHHHH
Q 045063 21 ALPKRYVYTHQVFDEISHGDLSSLNSQLFSY 51 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~ 51 (175)
+...+.+.|.++++-++..+..+|....+++
T Consensus 46 a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL 76 (94)
T cd08327 46 SQTTSRRKTMKLLDILPSRGPKAFHAFLDSL 76 (94)
T ss_pred ccCChHHHHHHHHHHHHhhChhHHHHHHHHH
Confidence 3444455555555555555555555555555
No 394
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.65 E-value=99 Score=23.94 Aligned_cols=17 Identities=12% Similarity=0.260 Sum_probs=9.3
Q ss_pred CChhHHHHHhhhccCCC
Q 045063 24 KRYVYTHQVFDEISHGD 40 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~~~ 40 (175)
++.+....+++.+.+.+
T Consensus 36 ~~~~~~e~l~~~Ird~~ 52 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDED 52 (393)
T ss_pred cCHHHHHHHHHHHHhcc
Confidence 45555556665555543
No 395
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=54.62 E-value=32 Score=19.43 Aligned_cols=35 Identities=6% Similarity=-0.192 Sum_probs=20.8
Q ss_pred CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063 38 HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL 72 (175)
Q Consensus 38 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 72 (175)
.++...++-+++.+++..-+++++..+.+..++|.
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~ 39 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS 39 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34555566666666666666666666666665554
No 396
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=54.55 E-value=41 Score=25.17 Aligned_cols=109 Identities=12% Similarity=0.122 Sum_probs=58.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
++..+.+..++....+.+..+ .....-..-|..+...|++.+|+++..+..+. .. ...-|+++=+--. .+++.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~~---~L~e~ 176 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLSS---QLQET 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHhH---HHHHH
Confidence 344444444443333333333 23444566677778889999999999887654 10 1112222211111 22233
Q ss_pred HHHHHHHHHh-----CCCcchHHHHHHHHHHHhcCChHHHH
Q 045063 96 KQVHALMIKG-----GTDSEPVVKTALMDMYSKYGLLGESV 131 (175)
Q Consensus 96 ~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~ 131 (175)
....+.+.+. -..-|...|..++.+|.-.|+...+.
T Consensus 177 ~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 177 LELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 3333332221 12567889999999999888776654
No 397
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=54.02 E-value=47 Score=20.05 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
...|..-+......+ -+++ ++|+--...|+..|...|..+++-..-.-.++...+++..|..
T Consensus 10 ~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 10 AQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 334555554433332 2333 7888888899999999999999998888888888888888863
No 398
>PLN03025 replication factor C subunit; Provisional
Probab=53.91 E-value=94 Score=23.48 Aligned_cols=69 Identities=7% Similarity=0.003 Sum_probs=45.0
Q ss_pred HhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----------------CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 104 KGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----------------FKDVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 104 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
+.|+..+......++... .|+...+...++... .+....-..+++. ...+++++|...+.+
T Consensus 173 ~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~-~~~~~~~~a~~~l~~ 249 (319)
T PLN03025 173 AEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRN-CLKGKFDDACDGLKQ 249 (319)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 567777777777776543 477777776666321 1111223334444 456889999999999
Q ss_pred HHhcccCC
Q 045063 168 MTRERVEF 175 (175)
Q Consensus 168 m~~~g~~p 175 (175)
|...|+.|
T Consensus 250 ll~~g~~~ 257 (319)
T PLN03025 250 LYDLGYSP 257 (319)
T ss_pred HHHcCCCH
Confidence 99888765
No 399
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=53.70 E-value=1.5e+02 Score=25.61 Aligned_cols=68 Identities=15% Similarity=0.060 Sum_probs=44.9
Q ss_pred HhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-----------------CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 104 KGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-----------------FKDVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 104 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
+.|+..+......++... .|+...+..+++... ..+......|+++ ...++...++.+++
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldA-L~~~d~~~al~~l~ 269 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTG-IINQDGAALLAKAQ 269 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 457766666666666543 477777777776532 1122234445565 44588999999999
Q ss_pred HHHhcccC
Q 045063 167 AMTRERVE 174 (175)
Q Consensus 167 ~m~~~g~~ 174 (175)
+|...|+.
T Consensus 270 ~L~~~G~d 277 (709)
T PRK08691 270 EMAACAVG 277 (709)
T ss_pred HHHHhCCC
Confidence 99998875
No 400
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=53.67 E-value=88 Score=23.08 Aligned_cols=129 Identities=12% Similarity=0.030 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh-CCCcchHHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG-GTDSEPVVKTAL 117 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l 117 (175)
...|+--+..+ +.|++++|.+.|+.+..+ +-+-...+--.+.-+..+.++.+.|....++..+. +-+||. -|-..
T Consensus 35 ~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Y 112 (254)
T COG4105 35 SELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYY 112 (254)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHH
Confidence 44567666665 789999999999999765 22223446667777888999999999999999874 334443 34444
Q ss_pred HHHHHh-------cCChHHHHHHHHhcc---C--C------Cch-----------hHHHH-HHHHHhcCChHHHHHHHHH
Q 045063 118 MDMYSK-------YGLLGESVEAFKEIE---F--K------DVV-----------TWNAL-LSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 118 i~~~~~-------~g~~~~a~~~~~~m~---~--~------~~~-----------~~~~l-i~~~~~~g~~~~a~~~~~~ 167 (175)
|.+.+. ..|...+.+.|..+. . | |.. -++.- -+-|.+.|.+-.|..-+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 444432 334444555555554 1 2 211 12222 3346678888888888888
Q ss_pred HHhc
Q 045063 168 MTRE 171 (175)
Q Consensus 168 m~~~ 171 (175)
|.+.
T Consensus 193 v~e~ 196 (254)
T COG4105 193 VLEN 196 (254)
T ss_pred HHhc
Confidence 8764
No 401
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=53.46 E-value=39 Score=21.29 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 80 TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
..+++.+.+.+.+-.|.++++.+.+.+...+..|.=--|+.+.+.|-+.+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 46677777777789999999999988877777754445667777776554
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=53.28 E-value=91 Score=23.09 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=31.1
Q ss_pred HHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 131 VEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 131 ~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
..+|+-..+|....-..++.. +..+++++|.+++.++-+.|+.|
T Consensus 228 enVfKv~d~PhP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred hhhhhccCCCChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCH
Confidence 334444446667777777775 45667889999998888888776
No 403
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=52.06 E-value=1.8e+02 Score=26.06 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=34.1
Q ss_pred hhcCCCChhHHHHHhhh-cc-CC-CchhHHHHHHHHHhCC--CcchHHHHHHHHHhc
Q 045063 19 ADALPKRYVYTHQVFDE-IS-HG-DLSSLNSQLFSYTRSR--NFPATWALFCYMHST 70 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~-~~-~~-~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~ 70 (175)
.....++++.....++. |. .. ...-..++|.+|.+.+ ++++|+.+..++++.
T Consensus 787 ~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 787 TASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred CCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 34455566666665544 32 33 3334578888888887 888888888888766
No 404
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=51.83 E-value=33 Score=19.73 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=12.9
Q ss_pred CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 56 NFPATWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 56 ~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
..+.+.++++.....| ..+|..+..++.+
T Consensus 42 ~~~k~~~Lld~l~~kg----~~af~~F~~~L~~ 70 (80)
T cd01671 42 RQDKARKLLDILPRKG----PKAFQSFLQALQE 70 (80)
T ss_pred hHHHHHHHHHHHHhcC----hHHHHHHHHHHHh
Confidence 4444555444444332 3344444444443
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.41 E-value=1.2e+02 Score=24.14 Aligned_cols=92 Identities=7% Similarity=-0.033 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcC--CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh---------CCCcch
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTC--LNLTAYTFTPVLGACSALPAPERGKQVHALMIKG---------GTDSEP 111 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---------~~~~~~ 111 (175)
.+.-+-..|..+|+++.|++.|.+.+..- .+-...+|..+|....-.+++........+.++. -+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 46777888999999999999999965442 2223447777777777888887777666655542 122333
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 112 VVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
..+..+.+...+ ++..|...|-.
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHh
Confidence 344444444333 66666555543
No 406
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=51.17 E-value=1.1e+02 Score=25.37 Aligned_cols=89 Identities=6% Similarity=-0.046 Sum_probs=54.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC--CchhH---HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG--DLSSL---NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~--~~~~~---~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
|+.-|.+.+++++|..++..|... +...| +.+.+.+.+..--.+....++.+...-..|....--.+..-|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Confidence 888899999999999999999864 33334 55556666666566777777777766443433211122222221 1
Q ss_pred CchhHHHHHHHHHHh
Q 045063 91 APERGKQVHALMIKG 105 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~ 105 (175)
-..-|+.+|..|.+.
T Consensus 493 V~~~aRRfFhhLLR~ 507 (545)
T PF11768_consen 493 VSDLARRFFHHLLRY 507 (545)
T ss_pred HHHHHHHHHHHHHHh
Confidence 124455666666543
No 407
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=51.11 E-value=34 Score=24.56 Aligned_cols=83 Identities=11% Similarity=0.192 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHHhcCCC-------CCHhhHHHHHHHHhcCC---------CchhHHHHHHHHHHhCCCc-chHHHHHHH
Q 045063 56 NFPATWALFCYMHSTCLN-------LTAYTFTPVLGACSALP---------APERGKQVHALMIKGGTDS-EPVVKTALM 118 (175)
Q Consensus 56 ~~~~a~~l~~~m~~~~~~-------~~~~t~~~ll~~~~~~~---------~~~~a~~~~~~m~~~~~~~-~~~~~~~li 118 (175)
..+.|..++.+|--..++ -...-|..+-++|++.| +.+.-.++++-..+.|++. =.+.|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 457888888888544332 13346888888888887 4455566666666766633 245777777
Q ss_pred HHHHhcCChHHHHHHHHhcc
Q 045063 119 DMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~ 138 (175)
+--.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 77666777777777776553
No 408
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.26 E-value=1e+02 Score=22.93 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=72.6
Q ss_pred hhhhhc-CCCChhHHHHHhhhccCC--------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 045063 16 ISIADA-LPKRYVYTHQVFDEISHG--------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC 86 (175)
Q Consensus 16 ll~~~~-~~~~~~~a~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~ 86 (175)
++...| ...-.+.|.+.|+..... +......++....+.|+.+.-..+++..... .+..--..++.++
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aL 211 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSAL 211 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhh
Confidence 344444 223355667777765431 2333556666666777755544444444433 3567788899999
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh--HHHHHHHHhcc-------CCCchhHHHHHHHHHh
Q 045063 87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL--GESVEAFKEIE-------FKDVVTWNALLSSFLR 154 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--~~a~~~~~~m~-------~~~~~~~~~li~~~~~ 154 (175)
+...+++....+++.....+..++... ..++.+....+.. +.++..+..-- ..+......++..+..
T Consensus 212 a~~~d~~~~~~~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~ 287 (324)
T PF11838_consen 212 ACSPDPELLKRLLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAG 287 (324)
T ss_dssp TT-S-HHHHHHHHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCT
T ss_pred hccCCHHHHHHHHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhc
Confidence 999999999999998887542333443 4444444434443 66666665422 2233355666665443
No 409
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.00 E-value=1.4e+02 Score=24.37 Aligned_cols=70 Identities=4% Similarity=0.078 Sum_probs=42.9
Q ss_pred HhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC---------------CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 104 KGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK---------------DVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 104 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~---------------~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
+.|+..+......++. ...|+..+|..++++.. .. +......++.+....+....|+.++.
T Consensus 195 ~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~ 272 (484)
T PRK14956 195 IENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILE 272 (484)
T ss_pred HcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3566666666555543 34578888888877642 11 22223345555444445568999999
Q ss_pred HHHhcccCC
Q 045063 167 AMTRERVEF 175 (175)
Q Consensus 167 ~m~~~g~~p 175 (175)
+|.+.|..|
T Consensus 273 ~l~~~G~d~ 281 (484)
T PRK14956 273 SLYQEGQDI 281 (484)
T ss_pred HHHHcCCCH
Confidence 999998765
No 410
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=49.99 E-value=69 Score=20.77 Aligned_cols=42 Identities=7% Similarity=0.215 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~ 135 (175)
....+|..|.+.|+-... ..|......+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345667777766664443 345566666666777777776665
No 411
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=49.59 E-value=4.4 Score=24.03 Aligned_cols=23 Identities=13% Similarity=0.287 Sum_probs=11.1
Q ss_pred HhCCCcchHHHHHHHHHHHhcCC
Q 045063 104 KGGTDSEPVVKTALMDMYSKYGL 126 (175)
Q Consensus 104 ~~~~~~~~~~~~~li~~~~~~g~ 126 (175)
+..+..+..+|..+|++|++.|.
T Consensus 17 QYeLsk~~~vyRvFiNgYar~g~ 39 (88)
T PF11491_consen 17 QYELSKNEAVYRVFINGYARNGF 39 (88)
T ss_dssp HHTTTTTTTB------TTSS--E
T ss_pred HHHhhcccceeeeeecccccceE
Confidence 34467788899999999999884
No 412
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=49.15 E-value=51 Score=18.99 Aligned_cols=51 Identities=22% Similarity=0.221 Sum_probs=26.4
Q ss_pred CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH
Q 045063 74 LTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG 128 (175)
Q Consensus 74 ~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (175)
++...-...+.++.+.++.+....+.+.+ + .+|..+-...+.+.++.|+-+
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l-~---d~~~~vr~~a~~aL~~i~~~~ 62 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEAIPALIELL-K---DEDPMVRRAAARALGRIGDPE 62 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHHHHHHHHHH-T---SSSHHHHHHHHHHHHCCHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCCHH
Confidence 44444455566666665543333333333 2 356666666666666666433
No 413
>PHA02875 ankyrin repeat protein; Provisional
Probab=48.72 E-value=1e+02 Score=24.05 Aligned_cols=76 Identities=7% Similarity=-0.100 Sum_probs=36.6
Q ss_pred hhcCCCChhHHHHHhhhccCCCchh--HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHhcCCCchh
Q 045063 19 ADALPKRYVYTHQVFDEISHGDLSS--LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACSALPAPER 94 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~~~~~~~~ 94 (175)
.-++.|+++.+..+++.-..++... ..+.+...++.|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.
T Consensus 8 ~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 8 DAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 3446688888888887654433221 223334444556644 333444455555432 11223334444555544
Q ss_pred HHHH
Q 045063 95 GKQV 98 (175)
Q Consensus 95 a~~~ 98 (175)
+..+
T Consensus 84 v~~L 87 (413)
T PHA02875 84 VEEL 87 (413)
T ss_pred HHHH
Confidence 4333
No 414
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.64 E-value=1.5e+02 Score=26.29 Aligned_cols=108 Identities=11% Similarity=0.032 Sum_probs=69.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCC-------chhHHHHHHHHHhCCCc--chHHHHHHHHHhcCCCCCHhhHHH-----
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGD-------LSSLNSQLFSYTRSRNF--PATWALFCYMHSTCLNLTAYTFTP----- 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~-------~~~~~~li~~~~~~g~~--~~a~~l~~~m~~~~~~~~~~t~~~----- 81 (175)
|+..|...|+.++|.++|......+ ...+..++.-+-+.+.. +-.++.-....+.........|+.
T Consensus 510 Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~~~ 589 (877)
T KOG2063|consen 510 LIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDKQE 589 (877)
T ss_pred HHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccChhh
Confidence 8999999999999999999987632 11244455555555544 444444444433322222223333
Q ss_pred -------HHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 045063 82 -------VLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK 123 (175)
Q Consensus 82 -------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 123 (175)
-+-.+........+...++++....-.++....+.++..|++
T Consensus 590 ~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 590 AESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122344555677888888998877667788889999998875
No 415
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.71 E-value=77 Score=22.14 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhc-----CCCCCHh-hHHHHHHHHhcCC----Cc-------hhHHHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHST-----CLNLTAY-TFTPVLGACSALP----AP-------ERGKQVHALMIK 104 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~~~~~~~-t~~~ll~~~~~~~----~~-------~~a~~~~~~m~~ 104 (175)
.-|...+.-+++.....++.+++++..+. .+.|+.+ ++-++-+++...+ +. ++|...|++...
T Consensus 29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 34666666666655555565566554321 4667765 6666666665443 22 333333443333
Q ss_pred hCCCcchHHHHHHHHHHHh
Q 045063 105 GGTDSEPVVKTALMDMYSK 123 (175)
Q Consensus 105 ~~~~~~~~~~~~li~~~~~ 123 (175)
..|+..+|+.-+....+
T Consensus 109 --~~P~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 109 --EDPNNELYRKSLEMAAK 125 (186)
T ss_dssp --H-TT-HHHHHHHHHHHT
T ss_pred --cCCCcHHHHHHHHHHHh
Confidence 46777777777776643
No 416
>smart00114 CARD Caspase recruitment domain. Motif contained in proteins involved in apoptotic signalling. Mediates homodimerisation. Structure consists of six antiparallel helices arranged in a topology homologue to the DEATH and the DED domain.
Probab=46.58 E-value=42 Score=19.90 Aligned_cols=52 Identities=8% Similarity=0.065 Sum_probs=22.6
Q ss_pred HHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 045063 31 QVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC 86 (175)
Q Consensus 31 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~ 86 (175)
.+++.+.+.++.+-.-.=..-......+.+..+++.....| ..+|..+++++
T Consensus 24 ~vld~L~~~~Vlt~~e~e~i~~~~t~~~~~~~Lld~l~~kG----~~Af~~F~~~L 75 (88)
T smart00114 24 GLLDYLVEKNVLTEKEIEAIKAATTKLRDKRELVDSLQKRG----SQAFDTFLDSL 75 (88)
T ss_pred HHHHHHHHcCCCCHHHHHHHHccCChHHHHHHHHHHHHhHh----HHHHHHHHHHH
Confidence 34444444444444333333333334444444554444443 33444444444
No 417
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.29 E-value=20 Score=23.61 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=25.7
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 86 CSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
.-+.|.-..+..+|..|.++|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34456777899999999999988874 7777654
No 418
>PRK09462 fur ferric uptake regulator; Provisional
Probab=46.24 E-value=85 Score=20.72 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=14.8
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL 126 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 126 (175)
..-.|.++++.+.+.+...+..|.=--++.+...|-
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 344455555555444433333332222333444443
No 419
>PHA03100 ankyrin repeat protein; Provisional
Probab=46.08 E-value=1.5e+02 Score=23.56 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhc
Q 045063 98 VHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 98 ~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
+.+.+.+.|..++... -.+.+..++..|..+-+..+++.-
T Consensus 158 iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g 199 (480)
T PHA03100 158 ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG 199 (480)
T ss_pred HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 3444455555544321 123455556666666666666543
No 420
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.91 E-value=1.3e+02 Score=22.93 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
++..-.+|..+|.+.+|.++.+..+... +.+...|-.++..+...||-..+...++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444566777888888888877776643 4566677788888888888777776666543
No 421
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.39 E-value=1.4e+02 Score=22.65 Aligned_cols=117 Identities=9% Similarity=-0.007 Sum_probs=79.5
Q ss_pred CCCcchHHHHHHHHHhc-CCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHH---HhCC--CcchHHHHHHHHHHHhcC
Q 045063 54 SRNFPATWALFCYMHST-CLNLT--AYTFTPVLGACSALPAPERGKQVHALMI---KGGT--DSEPVVKTALMDMYSKYG 125 (175)
Q Consensus 54 ~g~~~~a~~l~~~m~~~-~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~--~~~~~~~~~li~~~~~~g 125 (175)
..+.++|++-|.+..+. |-+.. -....-+++...+.+++++....+.+|. ++.+ .-+..+.|++++.-..+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34778999999987654 33322 2355667888999999999999988887 2323 234568899999988888
Q ss_pred ChHHHHHHHHhccC-----CCch----hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 126 LLGESVEAFKEIEF-----KDVV----TWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 126 ~~~~a~~~~~~m~~-----~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+-..++++...+ +|.. |-.-|-.-|...|.+.+...+++++..
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 87777776665431 2332 223455556666777777777777653
No 422
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=44.30 E-value=76 Score=19.61 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=14.9
Q ss_pred HHHHHHHhCCCcchHHHHHHHH
Q 045063 46 SQLFSYTRSRNFPATWALFCYM 67 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m 67 (175)
.+|..|...|+.++|..-+.++
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L 28 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLEL 28 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHh
Confidence 4556666777777777777665
No 423
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.19 E-value=2e+02 Score=24.40 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=43.3
Q ss_pred HhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-----------------CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 104 KGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-----------------FKDVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 104 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
+.|+..+......++.. -.|+...+..++++.. ..+......++.+ ...|+...++.+++
T Consensus 198 ~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~Llda-L~~~d~~~al~~l~ 274 (618)
T PRK14951 198 AENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDA-LAQGDGRTVVETAD 274 (618)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 45776666666666552 3477777777765432 1122233345554 44588999999999
Q ss_pred HHHhcccCC
Q 045063 167 AMTRERVEF 175 (175)
Q Consensus 167 ~m~~~g~~p 175 (175)
+|.+.|..|
T Consensus 275 ~l~~~G~~~ 283 (618)
T PRK14951 275 ELRLNGLSA 283 (618)
T ss_pred HHHHcCCCH
Confidence 998888654
No 424
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=43.51 E-value=57 Score=19.53 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=17.3
Q ss_pred HhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 32 VFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYM 67 (175)
Q Consensus 32 ~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m 67 (175)
+++.+.+.++.+-.-.=...++..+.+.|..+++-.
T Consensus 21 l~d~L~s~~ILt~~d~EeI~~~~t~~~qa~~LLdiL 56 (84)
T cd08810 21 HFDYLRSKRILTRDDCEEISCRTTSRKQAGKLLDIL 56 (84)
T ss_pred HHHHHHHcCCCCHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444444444555555555444
No 425
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=42.62 E-value=25 Score=20.49 Aligned_cols=41 Identities=5% Similarity=0.013 Sum_probs=17.7
Q ss_pred HHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc
Q 045063 30 HQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST 70 (175)
Q Consensus 30 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 70 (175)
..+++.+.+.++.+..-.=.........+.+..+++-....
T Consensus 19 ~~ild~L~~~~vlt~~e~e~I~~~~t~~~k~~~LLd~l~~k 59 (85)
T PF00619_consen 19 DDILDHLLSRGVLTEEEYEEIRSEPTRQDKARKLLDILKRK 59 (85)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 34444444444444433333333333444455555444333
No 426
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=42.47 E-value=1.1e+02 Score=25.45 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=30.6
Q ss_pred hcCCCChhHHHHHhhhccCC--CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063 20 DALPKRYVYTHQVFDEISHG--DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL 72 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~ 72 (175)
..+.=+.+.-.+++.++... ....++.++++....|-.+.+.-+.+......+
T Consensus 355 ~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~ 409 (618)
T PF01347_consen 355 LLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKL 409 (618)
T ss_dssp HHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S
T ss_pred HHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC
Confidence 33455566666666666555 567788888888888875555444444444333
No 427
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.36 E-value=99 Score=20.39 Aligned_cols=55 Identities=9% Similarity=-0.098 Sum_probs=43.5
Q ss_pred CCchhHHHHHHHHHhC-CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 39 GDLSSLNSQLFSYTRS-RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
+-+..-..++..+... +..-.|.++++.+.+.+..++..|.=-.|+.+.+.|-+.
T Consensus 14 r~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4556677888888875 578899999999999988888887777778888888654
No 428
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.29 E-value=1.8e+02 Score=23.60 Aligned_cols=57 Identities=4% Similarity=-0.022 Sum_probs=33.4
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch------hHHHHHHHHHHhCCCc
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE------RGKQVHALMIKGGTDS 109 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~------~a~~~~~~m~~~~~~~ 109 (175)
+.++.+.|+..+.+|...|..|....-..+..+.-..|.-+ .+..+++...+-|.+-
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~e 317 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFAE 317 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCcc
Confidence 45788888888888888888777664444444443344222 3344444444445543
No 429
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=41.88 E-value=1.6e+02 Score=22.55 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=12.1
Q ss_pred HhcCChHHHHHHHHHHHhcccCC
Q 045063 153 LRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
...|+..+|..+++++...|..|
T Consensus 219 il~g~~~~a~~~l~~L~~~ge~p 241 (334)
T COG1466 219 LLKGDVKKALRLLRDLLLEGEEP 241 (334)
T ss_pred HHCCCHHHHHHHHHHHHHcCCcH
Confidence 34455555555555555555443
No 430
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=41.76 E-value=44 Score=23.17 Aligned_cols=102 Identities=8% Similarity=-0.066 Sum_probs=47.8
Q ss_pred hcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcC--CCCCHhhHHHHHHHHhcCCCchhHH
Q 045063 20 DALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTC--LNLTAYTFTPVLGACSALPAPERGK 96 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~~~~~t~~~ll~~~~~~~~~~~a~ 96 (175)
|...|+.....++-+++... +..... .....+...+-.+++...+.- .-.+...|..+..+.....+.++..
T Consensus 45 FR~~G~~~~i~~l~~~~~~~~~~~~~~-----~~~~~d~h~va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~ 119 (190)
T cd04400 45 FRLSGSASVIKQLKERFNTEYDVDLFS-----SSLYPDVHTVAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRA 119 (190)
T ss_pred eeCCCcHHHHHHHHHHHcCCCCCCccc-----cccccCHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHH
Confidence 44456655565555544322 111100 012234445555555554431 1123445666665544333444444
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCC
Q 045063 97 QVHALMIKGGTDSEPVVKTALMDMYSKYGL 126 (175)
Q Consensus 97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 126 (175)
..++.+.+.=..++..+...++..+.+...
T Consensus 120 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~ 149 (190)
T cd04400 120 LELKDLVSQLPQANYDLLYVLFSFLRKIIE 149 (190)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 445555554334455677777766655433
No 431
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=41.55 E-value=37 Score=27.34 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=30.5
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
.+++-.++++.+.+.| .+| ....-|++|.|.+++++|.+.+++-.
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~ 113 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESI 113 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhh
Confidence 4566666777766654 233 34455788888888888888887653
No 432
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.97 E-value=1.1e+02 Score=24.26 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccC---------C--CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 112 VVKTALMDMYSKYGLLGESVEAFKEIEF---------K--DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---------~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++...|+..++-.||+..|.++++.+.- | .+.+|-.+-=+|.=.++...|.+.|....
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557788888999999999999998761 1 34455556666777788888888887753
No 433
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=40.82 E-value=79 Score=21.11 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=31.3
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
|...+..| .+.|-..+...+.++|++.|+..+...|+.++.-
T Consensus 112 tlGvL~~a-k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 112 TLGVLALA-KSKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred hhHHHHHH-HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 45555444 3456778888999999999998888888877654
No 434
>PF14649 Spatacsin_C: Spatacsin C-terminus
Probab=40.77 E-value=1.6e+02 Score=22.33 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHH---HHHhcCCCchhHHHHHHHHHHh-CCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 61 WALFCYMHSTCLNLTAYTFTPVL---GACSALPAPERGKQVHALMIKG-GTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 61 ~~l~~~m~~~~~~~~~~t~~~ll---~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
.++++.+....-.|....--.++ .++....+.+....+.+..+.. ..-....-|+.++......|++.+...+|+.
T Consensus 5 ~~Ll~~~~~~~~~~~~~~VELLI~AH~cf~~~c~meGi~~vl~~~~~~~~~l~~~~~~~llvRLltGi~ry~em~yifd~ 84 (296)
T PF14649_consen 5 HKLLELADSSHKSQLSCIVELLIRAHDCFTLSCSMEGIAVVLQAAKSLVNHLAAEGDWSLLVRLLTGIGRYREMTYIFDI 84 (296)
T ss_pred HHHHHHHhccCCCCccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHccCcHHHHHHHHHH
Confidence 34555554443334555556666 5666666777777676655421 1223455788888888888888888888887
Q ss_pred ccCCCchhHHHHHHHHH
Q 045063 137 IEFKDVVTWNALLSSFL 153 (175)
Q Consensus 137 m~~~~~~~~~~li~~~~ 153 (175)
..+.+. +..|+....
T Consensus 85 L~~n~q--fE~LL~k~~ 99 (296)
T PF14649_consen 85 LIENDQ--FELLLRKGI 99 (296)
T ss_pred HHHcCh--HHHHHhccc
Confidence 776665 666666533
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.20 E-value=1.4e+02 Score=21.69 Aligned_cols=56 Identities=9% Similarity=-0.032 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHh-----CCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 81 PVLGACSALPAPERGKQVHALMIKG-----GTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
-+-.-+.+.|+++.|..+++.+... ...+...+...+..++.+.|+.++...+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445667889999999999988622 2355566778888888899998887655433
No 436
>COG5210 GTPase-activating protein [General function prediction only]
Probab=39.96 E-value=2.1e+02 Score=23.37 Aligned_cols=46 Identities=7% Similarity=0.035 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+....++..+++.|+.+...++..++..+.+....+.+.++++.+-
T Consensus 359 ~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf 404 (496)
T COG5210 359 ELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLF 404 (496)
T ss_pred HHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4556788888888888888888888888888888888888888765
No 437
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.23 E-value=53 Score=17.65 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=9.6
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 045063 151 SFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~ 169 (175)
|+.+.|+.++|.+..+.+.
T Consensus 10 g~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 4455555555555555443
No 438
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.19 E-value=1.6e+02 Score=21.94 Aligned_cols=151 Identities=10% Similarity=0.046 Sum_probs=79.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchh------HHHHHHHHHhCCCcchHHHHHHHHHh---cCCCCCHhhHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSS------LNSQLFSYTRSRNFPATWALFCYMHS---TCLNLTAYTFTPVL 83 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~------~~~li~~~~~~g~~~~a~~l~~~m~~---~~~~~~~~t~~~ll 83 (175)
--.+|-...+++.|...+.+..+ .+... |.-.+--.-+...+.++.++|++... ..-.|+...-. |=
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma-le 115 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA-LE 115 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH-HH
Confidence 34456666677777666665542 22222 33333333334556677777766421 22334443211 11
Q ss_pred HH--HhcCCCchhHHHHHHHHHHh---C--CCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-------Cc--hhHHH
Q 045063 84 GA--CSALPAPERGKQVHALMIKG---G--TDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-------DV--VTWNA 147 (175)
Q Consensus 84 ~~--~~~~~~~~~a~~~~~~m~~~---~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~--~~~~~ 147 (175)
++ ..+..++++|.++|++...- + .+.-...+...-..+.+..++++|-..|..-..- +. ..|-.
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va 195 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVA 195 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHH
Confidence 11 13455778888888776531 1 1222345677777888888888887777654311 11 12334
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 045063 148 LLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~ 167 (175)
.|-.|....+...|...+++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcc
Confidence 44445555666677666665
No 439
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=39.10 E-value=81 Score=18.46 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=8.7
Q ss_pred CChHHHHHHHHHHHh
Q 045063 156 GLAKEAFGVFQAMTR 170 (175)
Q Consensus 156 g~~~~a~~~~~~m~~ 170 (175)
|....|.+-|++|..
T Consensus 59 G~L~~aL~ey~~~~g 73 (82)
T PF11123_consen 59 GELAAALEEYKKMVG 73 (82)
T ss_pred HHHHHHHHHHHHHcC
Confidence 445566666666653
No 440
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=38.76 E-value=1.4e+02 Score=23.08 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=40.4
Q ss_pred HhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063 52 TRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122 (175)
Q Consensus 52 ~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 122 (175)
.|..++-...++.+...+.+ ...-..+.++.. .|+.+.-...+..+++.|+.++......|.+..+
T Consensus 287 lK~r~~y~~~kfvd~L~r~d----~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 287 LKARDFYSWPKFVDFLARRD----PEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred HhhhhhcchHHHHHHHhccC----hHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 34445555666666664442 223444444443 4555666777777888888888888877777654
No 441
>TIGR03236 dnd_assoc_1 dnd system-associated protein 1. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein family are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of Bacillus cereus E33L, Hahella chejuensis KCTC 2396, and Pseudoalteromonas haloplanktis TAC12.
Probab=38.67 E-value=1.2e+02 Score=23.74 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=33.8
Q ss_pred HhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 86 CSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 86 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
|+...+-=.-.++|.+..++|+-.|..+-..+|..|-+.|.+|+
T Consensus 306 ~Vg~~~Kl~l~~L~~eFekRGvffD~~SkqeiI~fyEkin~lEK 349 (363)
T TIGR03236 306 AVGEREKLPLNRLIEEFSKRGVAFDRQSQQMLIEFYERHGNLER 349 (363)
T ss_pred HhCCcccchHHHHHHHHHhcCceeCchhHHHHHHHHHHhCcccc
Confidence 33333444566888888899999999999999999988887765
No 442
>cd08325 CARD_CASP1-like Caspase activation and recruitment domain found in Caspase-1 and related proteins. Caspase activation and recruitment domain (CARD) similar to those found in Caspase-1 (CASP1, ICE) and related proteins, including CARD-only proteins such as ICEBERG or CARD18, INCA (CARD17), CARD16 (COP1, PSEUDO-ICE), CARD8 (DACAR, NDPP1, TUCAN), and CARD12 (NLRC4), as well as ICE-like caspases such as CASP12, CASP5 (ICH-3) and CASP4 (TX, ICH-2). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. CASP1 plays a central role in the cellular response to a wide variety of microbial and non-microbial stimuli, being activated by the inflammasome or the pyroptosome. CARD8 binds itself and the initiator caspase-9, interfering with the binding of APAF-1 and suppressing caspase-9 activation. CARD12 is a Nod-like receptor (NLR) that plays an important role in the innate immune response to Gram-negative bacteria. Caspase-4 (CASP4), -5 (CASP5),
Probab=38.38 E-value=39 Score=20.07 Aligned_cols=15 Identities=7% Similarity=-0.055 Sum_probs=7.5
Q ss_pred CcchHHHHHHHHHhc
Q 045063 56 NFPATWALFCYMHST 70 (175)
Q Consensus 56 ~~~~a~~l~~~m~~~ 70 (175)
..+.|..+.+.....
T Consensus 46 ~~dkar~Lid~v~~K 60 (83)
T cd08325 46 IMDKARVLVDSVTEK 60 (83)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555444
No 443
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.17 E-value=91 Score=22.21 Aligned_cols=127 Identities=14% Similarity=0.111 Sum_probs=69.6
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHhcCC--CchhHHHHHHHHHHhCCCcch-----
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACSALP--APERGKQVHALMIKGGTDSEP----- 111 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~~~~----- 111 (175)
....-.=|+.|-+.||+..-=.+|-..+..--+++.- -..++-.++.+.- ++.--...|.+..-...+.|.
T Consensus 51 l~~~~~eie~Ckek~DW~klg~ly~nv~~gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~ 130 (233)
T PF14669_consen 51 LASAVVEIEHCKEKGDWTKLGNLYINVKMGCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTL 130 (233)
T ss_pred HHHHHHHHHHHhhhccHHHHhhHHhhHHhhcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhh
Confidence 3334444566666777777666776655443333322 1222222222211 222222233333322222121
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHhccC------------------CCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 112 --VVKTALMDMYSKYGLLGESVEAFKEIEF------------------KDVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 112 --~~~~~li~~~~~~g~~~~a~~~~~~m~~------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
.+=-+++..|-+.-++.+..++++.|.+ +--.+-|.-..-|.++|..+.|..++++
T Consensus 131 LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 131 LGRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 2234667778888888888888887752 1233566667778899999999988875
No 444
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=38.03 E-value=2.3e+02 Score=23.35 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 143 VTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
...-.|+.+ ...|+.++|+.+++++...|..|
T Consensus 259 ~~if~L~~a-i~~~d~~~Al~~l~~L~~~g~~~ 290 (507)
T PRK06645 259 SVIIEFVEY-IIHRETEKAINLINKLYGSSVNL 290 (507)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCH
Confidence 333445554 44588888888888888877654
No 445
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=38.03 E-value=1.6e+02 Score=21.56 Aligned_cols=70 Identities=4% Similarity=-0.104 Sum_probs=51.0
Q ss_pred hhhhhcCCCChhHHHHHhhhc-cC-C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEI-SH-G-DLSSLNSQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGA 85 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~-~~-~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~ 85 (175)
.++.+.+.++++++....+.- +. | |...--.++.-+|-.|+++.|..-++-.-+- ...+-..+|..++.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 456677889999998887754 32 3 7778889999999999999999887765322 233444577777755
No 446
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=37.95 E-value=1.4e+02 Score=20.89 Aligned_cols=90 Identities=11% Similarity=0.043 Sum_probs=45.6
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHh-----CCCcch-HHHHHHHHHHHh----cCChHHHHHHHHh-------cc--
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKG-----GTDSEP-VVKTALMDMYSK----YGLLGESVEAFKE-------IE-- 138 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~li~~~~~----~g~~~~a~~~~~~-------m~-- 138 (175)
-|...|.-+++.....++..++++-+.. .+.|+- .++-++=.+|.. ..+..+|.+.|+. ..
T Consensus 30 ~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 30 NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 4555565555555544554444444421 246665 355555555543 3334444444444 33
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063 139 FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 173 (175)
+|+..+|+.-+... ++|-++..|+.+++.
T Consensus 110 ~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 110 DPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp -TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred CCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 78999999888874 356666666666543
No 447
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=37.54 E-value=91 Score=18.56 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHH
Q 045063 117 LMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAF 162 (175)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~ 162 (175)
+-......|..+.|..+++.+. +..--+..+++++-..|..+-|.
T Consensus 38 I~a~~~~~G~~~aa~~Ll~~L~-r~~~Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 38 IQAAENNSGNIKAAWTLLDTLV-RRDNWLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHhcCChHHHHHHHHHHHh-ccCChHHHHHHHHHHcCCHHHHH
Confidence 3333445566666777777666 55556666777766666655543
No 448
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=37.17 E-value=1.5e+02 Score=21.01 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=38.1
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALM 102 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m 102 (175)
...-+.++..+.-.|+++.|.+.|.-+.+.. ..|.. .|..=+..+.+.+......+.++.|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3346788888888899999999999887652 23332 4555555555555444443444444
No 449
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=37.05 E-value=78 Score=17.81 Aligned_cols=42 Identities=26% Similarity=0.297 Sum_probs=27.6
Q ss_pred hHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063 127 LGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 127 ~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 173 (175)
+++|.++.-+-.+ +-.++|.--.+.| +.+|..+.++|.+.|+
T Consensus 7 y~~a~~~V~~~~~----~S~S~lQR~~~IG-ynrAariid~lE~~Gi 48 (63)
T smart00843 7 YDEAVELVIETQK----ASTSLLQRRLRIG-YNRAARLIDQLEEEGI 48 (63)
T ss_pred HHHHHHHHHHhCC----CChHHHHHHHhcc-hhHHHHHHHHHHHCcC
Confidence 4455554444222 2335666677777 7889999999999985
No 450
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.05 E-value=2.4e+02 Score=23.22 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=41.9
Q ss_pred HhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----------------CCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 104 KGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----------------FKDVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 104 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
+.|+..+......++... .|+...|...++... .+.......+++++ ..++.+.|..++++
T Consensus 190 ~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~~d~~~Al~~l~~ 266 (504)
T PRK14963 190 AEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQGDAAEALSGAAQ 266 (504)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 456666655555554432 366666655555432 11222234455554 66899999999999
Q ss_pred HHhcccCC
Q 045063 168 MTRERVEF 175 (175)
Q Consensus 168 m~~~g~~p 175 (175)
|...|..|
T Consensus 267 Ll~~G~~~ 274 (504)
T PRK14963 267 LYRDGFAA 274 (504)
T ss_pred HHHcCCCH
Confidence 99888654
No 451
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=37.00 E-value=2.3e+02 Score=23.08 Aligned_cols=156 Identities=12% Similarity=0.013 Sum_probs=88.3
Q ss_pred chhhhhhcCCCChhHHHHHhhhccCC--C----chhHHHHHHHHHhCCCcc-----hHHHHHHHHHhcCCCCCHhhHHHH
Q 045063 14 TCISIADALPKRYVYTHQVFDEISHG--D----LSSLNSQLFSYTRSRNFP-----ATWALFCYMHSTCLNLTAYTFTPV 82 (175)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~f~~~~~~--~----~~~~~~li~~~~~~g~~~-----~a~~l~~~m~~~~~~~~~~t~~~l 82 (175)
+-+.+.--++.-.++++++.+.|..+ + +....++|.-|||+++++ .=+.+++-....++ |-..+||+.
T Consensus 59 d~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL~pl~~L~l-prsd~fN~F 137 (669)
T KOG3636|consen 59 DQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLLEPLLLLNL-PRSDEFNVF 137 (669)
T ss_pred HHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHHHHHHHhcC-Ccchhhhhh
Confidence 33444444555556677777777643 2 224788999999987664 33455666555544 444455554
Q ss_pred H---HHHh-----cCCCchhHH---------HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC-CCch-
Q 045063 83 L---GACS-----ALPAPERGK---------QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF-KDVV- 143 (175)
Q Consensus 83 l---~~~~-----~~~~~~~a~---------~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~- 143 (175)
. +-|. ..|++=... ++-..+....+.||..+.|.+-..|+.+-..+-...+|+.-.+ .|..
T Consensus 138 ~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~ 217 (669)
T KOG3636|consen 138 FAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFL 217 (669)
T ss_pred HhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcee
Confidence 3 3332 222221111 1222233446899999999988888888888877777776542 2332
Q ss_pred -hHHHH---HHH-----HHhcCChHHHHHHHHHHHh
Q 045063 144 -TWNAL---LSS-----FLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 144 -~~~~l---i~~-----~~~~g~~~~a~~~~~~m~~ 170 (175)
-+-++ |.+ -.+...-+++.+.++.|..
T Consensus 218 vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~ 253 (669)
T KOG3636|consen 218 VFFLALIILINAKEEILQVKSDSKEEAIKFLENMPA 253 (669)
T ss_pred hHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCch
Confidence 22222 221 1233445677777777653
No 452
>PRK07914 hypothetical protein; Reviewed
Probab=36.99 E-value=1.8e+02 Score=21.95 Aligned_cols=27 Identities=7% Similarity=-0.085 Sum_probs=19.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 148 LLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
|+++ +-.|+..+|.++++++...|..|
T Consensus 202 L~dA-i~~g~~~~A~~~l~~L~~~ge~p 228 (320)
T PRK07914 202 IADK-AVAGDVAGAAEALRWAMMRGEPH 228 (320)
T ss_pred HHHH-HHCCCHHHHHHHHHHHHHCCCch
Confidence 3443 56788888888888888887665
No 453
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=36.89 E-value=81 Score=17.83 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=28.9
Q ss_pred ChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063 126 LLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 126 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 173 (175)
.+++|.+++-+-. .+-.++|.--.+-| +.+|..+.++|.+.|+
T Consensus 7 ly~~a~~~V~~~~----~~S~S~lQR~~rIG-ynrAariid~LE~~Gi 49 (65)
T PF09397_consen 7 LYEEAVEFVIEEG----KASISLLQRKFRIG-YNRAARIIDQLEEEGI 49 (65)
T ss_dssp THHHHHHHHHHCT----CECHHHHHHHHT---HHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHcC----CccHHHHHHHhCCC-HHHHHHHHHHHHHCCC
Confidence 4666766665522 23345677777788 7899999999999985
No 454
>PHA02798 ankyrin-like protein; Provisional
Probab=36.86 E-value=2.2e+02 Score=22.90 Aligned_cols=114 Identities=5% Similarity=-0.025 Sum_probs=54.8
Q ss_pred CCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh--HHHHHHHHhcCCCchhHH
Q 045063 22 LPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT--FTPVLGACSALPAPERGK 96 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t--~~~ll~~~~~~~~~~~a~ 96 (175)
..++.+-+..+++.-...+ ....+.|..+......+....++.+-+.+.|..++... -.+-+.+++..+.. .-.
T Consensus 47 ~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~-~~~ 125 (489)
T PHA02798 47 DSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYI-NNL 125 (489)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCc-ChH
Confidence 3446666666666544322 22223332222111122334667777777787776542 22233333333322 234
Q ss_pred HHHHHHHHhCCCcchHH--HHHHHHHHHhcCC---hHHHHHHHHh
Q 045063 97 QVHALMIKGGTDSEPVV--KTALMDMYSKYGL---LGESVEAFKE 136 (175)
Q Consensus 97 ~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~---~~~a~~~~~~ 136 (175)
++...+.+.|..++..- -.+.+..+.+.|. .+-+..+++.
T Consensus 126 ~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ 170 (489)
T PHA02798 126 EILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK 170 (489)
T ss_pred HHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHh
Confidence 55566667776665431 2334455566665 5555555554
No 455
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=36.76 E-value=1.2e+02 Score=23.47 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHHH--HHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhcccC
Q 045063 115 TALMD--MYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVE 174 (175)
Q Consensus 115 ~~li~--~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 174 (175)
+.|++ +|.|..++....++++.+.+.|...-.+|+++ .-.|+-+.--..++++...|+.
T Consensus 278 ~~LmdfI~~lK~r~~y~~~kfvd~L~r~d~e~~~~L~~a-i~~~~~~~~Ysa~R~~k~~g~~ 338 (354)
T TIGR01914 278 GVLMDFIAYLKARDFYSWPKFVDFLARRDPEISLQLTDA-ILNGDEEAFYTALRELKKSGVR 338 (354)
T ss_pred hHHHHHHHHHhhhhhcchHHHHHHHhccChHHHHHHHHH-HHcCChhHHHHHHHHHhhcCCC
Confidence 34443 34566677778888888877777777777776 4455566677788888887754
No 456
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=36.46 E-value=27 Score=27.86 Aligned_cols=50 Identities=12% Similarity=0.040 Sum_probs=23.7
Q ss_pred HHHhCCCcchHHHHHHHHHhcCCC---CCHhhHHHHHHHHhcCCCchhHHHHH
Q 045063 50 SYTRSRNFPATWALFCYMHSTCLN---LTAYTFTPVLGACSALPAPERGKQVH 99 (175)
Q Consensus 50 ~~~~~g~~~~a~~l~~~m~~~~~~---~~~~t~~~ll~~~~~~~~~~~a~~~~ 99 (175)
-+||.|+.+...++|+...+.|.. .-+..|.-|-+++.-.+++++|.+++
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 345555555555555555554421 11123444444444444555555443
No 457
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.92 E-value=1.2e+02 Score=19.50 Aligned_cols=43 Identities=9% Similarity=0.250 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHhCCCcc-hHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 94 RGKQVHALMIKGGTDSE-PVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
.+..+|..|...|+-.. ...|..-...+...|++.+|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88889999988877544 45778888888889999999888864
No 458
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.68 E-value=51 Score=26.10 Aligned_cols=53 Identities=17% Similarity=0.227 Sum_probs=44.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----------CCchhHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----------GDLSSLNSQLFSYTRSRNFPATWALFCYMH 68 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~ 68 (175)
|+..++-.||+..|.++.+.+.- -.+.+|=.+--+|.-.+++.+|.+.|....
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887641 145667778888899999999999998864
No 459
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=35.65 E-value=2.1e+02 Score=22.12 Aligned_cols=72 Identities=8% Similarity=-0.005 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH----------hcCChHHH
Q 045063 61 WALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS----------KYGLLGES 130 (175)
Q Consensus 61 ~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----------~~g~~~~a 130 (175)
.++|+.|.+.++.|.-.+|.=+.--+++.=.++.+..+|+.+...... |..|+..|| -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467777888899999988766666677877899999999998754333 444444443 37888888
Q ss_pred HHHHHhc
Q 045063 131 VEAFKEI 137 (175)
Q Consensus 131 ~~~~~~m 137 (175)
.++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 8888763
No 460
>smart00031 DED Death effector domain.
Probab=35.06 E-value=95 Score=18.09 Aligned_cols=38 Identities=13% Similarity=0.067 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 57 FPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 57 ~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
...+.++|..|.+.|. .+......+...+...++.+..
T Consensus 37 ~~~~ldlf~~Le~~~~-l~~~nl~~L~elL~~i~R~DLl 74 (79)
T smart00031 37 IKTFLDLFSALEEQGL-LSEDNLSLLAELLYRLRRLDLL 74 (79)
T ss_pred cCCHHHHHHHHHHcCC-CCCccHHHHHHHHHHcCHHHHH
Confidence 4677777777766643 2222333444445555544443
No 461
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.81 E-value=1.9e+02 Score=21.50 Aligned_cols=120 Identities=12% Similarity=-0.043 Sum_probs=70.2
Q ss_pred HHHHHHHHH-hCCCcchHHHHHHHHHhcCC----CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063 44 LNSQLFSYT-RSRNFPATWALFCYMHSTCL----NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM 118 (175)
Q Consensus 44 ~~~li~~~~-~~g~~~~a~~l~~~m~~~~~----~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 118 (175)
...++...| .....+.|.+.|++....+. .++...-..++....+.|+.+.-..+++.... .++...-..++
T Consensus 132 r~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l 208 (324)
T PF11838_consen 132 RALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLL 208 (324)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHH
Confidence 344455555 11234688888998876422 44555667778888888886666666665553 34667778888
Q ss_pred HHHHhcCChHHHHHHHHhccCCC---chhHHHHHHHHHhcCCh--HHHHHHHH
Q 045063 119 DMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSSFLRHGLA--KEAFGVFQ 166 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~~--~~a~~~~~ 166 (175)
.+.+-..+.+...++++.....+ ..-...++.++...+.. +.+.+.+.
T Consensus 209 ~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 209 SALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 88888888888778877766542 11234455555534433 55555443
No 462
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=34.80 E-value=2.8e+02 Score=25.06 Aligned_cols=12 Identities=0% Similarity=0.036 Sum_probs=8.9
Q ss_pred HHHHHHHHHhCC
Q 045063 44 LNSQLFSYTRSR 55 (175)
Q Consensus 44 ~~~li~~~~~~g 55 (175)
-+++|.++++.|
T Consensus 1177 k~tli~AL~kKg 1188 (1304)
T KOG1114|consen 1177 KDTLIDALVKKG 1188 (1304)
T ss_pred HHHHHHHHHHhh
Confidence 477888888765
No 463
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.68 E-value=1.7e+02 Score=20.89 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCC--------------CcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 79 FTPVLGACSALPAPERGKQVHALMIKGGT--------------DSEPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
-.++|-.|-+.-.+.+++.+++.|.+..+ .+--...|.-...|.++|..|.|..++++-
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 34667778888888899988888876533 233456788889999999999999999864
No 464
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=34.59 E-value=3.1e+02 Score=23.83 Aligned_cols=61 Identities=8% Similarity=-0.023 Sum_probs=36.6
Q ss_pred HHHHHHh---CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-----chhHHHHHHHHHHhCC
Q 045063 47 QLFSYTR---SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-----PERGKQVHALMIKGGT 107 (175)
Q Consensus 47 li~~~~~---~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~ 107 (175)
.|+++.| .+|.+.|+..+.+|.+.|..|....-..+.-+.-..|. ...+...++....-|+
T Consensus 261 ~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~ 329 (725)
T PRK13341 261 TISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGL 329 (725)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCC
Confidence 4555544 46788888888888888888776665555555544442 2233344444444454
No 465
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.50 E-value=1.3e+02 Score=23.55 Aligned_cols=17 Identities=12% Similarity=0.118 Sum_probs=9.1
Q ss_pred cCCCchhHHHHHHHHHH
Q 045063 88 ALPAPERGKQVHALMIK 104 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~ 104 (175)
+.|+..+|...+..+.+
T Consensus 287 klGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMK 303 (556)
T ss_pred HhhhHHHHHHHHHHHhh
Confidence 45555555555555544
No 466
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=33.82 E-value=2.8e+02 Score=23.16 Aligned_cols=123 Identities=13% Similarity=0.099 Sum_probs=81.4
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
|-...-++|..+..+....-+..+-.+|..-|- +-..+-.+++++... ..+.-..+|+++.+..+ -|++.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 445567788888888888888888888877654 667888999999988 56788888888887643 34455556666
Q ss_pred HHHhcCChHHHHHHHHhccCC------Cch---hHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 120 MYSKYGLLGESVEAFKEIEFK------DVV---TWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~------~~~---~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
.|-+ ++...+..+|.....+ +.. .|.-|+.- -..+.+....+..++.
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiq 196 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQ 196 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHH
Confidence 6665 7777777777665422 221 46655541 1234455555544443
No 467
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=33.39 E-value=2.1e+02 Score=21.55 Aligned_cols=19 Identities=0% Similarity=-0.174 Sum_probs=7.7
Q ss_pred CCchhHHHHHHHHHhCCCc
Q 045063 39 GDLSSLNSQLFSYTRSRNF 57 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~ 57 (175)
++..+-.....++.+.|+.
T Consensus 118 ~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 118 ENEGVRAAAARALGKLGDE 136 (335)
T ss_pred CcHhHHHHHHHHHHhcCch
Confidence 3333444444444444433
No 468
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=33.19 E-value=1.4e+02 Score=20.39 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=13.8
Q ss_pred hCCCcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063 105 GGTDSEPVVKTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 105 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 135 (175)
.|+.|....+.-++..+.+.-.++.+.++++
T Consensus 161 ~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD 191 (199)
T smart00164 161 LGIDPSLYALRWFLTLFARELPLEIVLRIWD 191 (199)
T ss_pred cCCCchhHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3444444444444444444444444444444
No 469
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=33.03 E-value=86 Score=22.03 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=24.3
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHH
Q 045063 77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAF 134 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 134 (175)
..+..+++.|.+.|+.+..+++.-.+ .|+.--.+.++..|-+.|.++.-.-++
T Consensus 23 ~v~k~lv~~y~~~~~~~~lE~lI~~L-----D~~~LDidq~i~lC~~~~LydalIYv~ 75 (196)
T PF12816_consen 23 EVFKALVEHYASKGRLERLEQLILHL-----DPSSLDIDQVIKLCKKHGLYDALIYVW 75 (196)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhC-----CHHhcCHHHHHHHHHHCCCCCeeeeee
Confidence 44555555555555555555554443 222222334444444555444433333
No 470
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.96 E-value=1.5e+02 Score=19.61 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063 61 WALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM 118 (175)
Q Consensus 61 ~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 118 (175)
.+-+.......+.|+....-.-+.+|-+.+++..|..+++-.+.. +.+.-..|-.++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 333444445578899999999999999999999999999988743 333333455444
No 471
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=32.50 E-value=2.9e+02 Score=22.87 Aligned_cols=113 Identities=9% Similarity=-0.009 Sum_probs=71.3
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM 118 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 118 (175)
+....|+.|+..+-.. +.++-.+++.++... + ...+..++++....|..+....+.+.+....+.+ ...-..+.
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHH
Confidence 3455688888888655 668888888887541 1 6789999999999999888888887777655543 33333333
Q ss_pred HHH--HhcCChHHHHHHHHhccCC----C-------chhHHHHHHHHHhcCC
Q 045063 119 DMY--SKYGLLGESVEAFKEIEFK----D-------VVTWNALLSSFLRHGL 157 (175)
Q Consensus 119 ~~~--~~~g~~~~a~~~~~~m~~~----~-------~~~~~~li~~~~~~g~ 157 (175)
... .+.-..+-...+++.+..+ . ..++..|+..+|....
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~ 433 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTP 433 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCC
Confidence 322 2334444444555444322 2 3457777776665543
No 472
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=32.41 E-value=64 Score=25.89 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=40.1
Q ss_pred HHhcCCCchhHHHHHHHHHHhCCC---cchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063 85 ACSALPAPERGKQVHALMIKGGTD---SEPVVKTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~ 135 (175)
-+|+.|+.+.+..+|+..++.|.. .-..+|+.|=++|.-.+++++|.+.-.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 368999999999999999988752 123367777789999999999987544
No 473
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=32.32 E-value=18 Score=19.80 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=20.6
Q ss_pred CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 045063 55 RNFPATWALFCYMHSTCLNLTAYTFTPVLGAC 86 (175)
Q Consensus 55 g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~ 86 (175)
|=.++..++|+.|..+...|....|+-.++=+
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDY 37 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHH
Confidence 44567777777777777777666665544433
No 474
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=32.21 E-value=1.6e+02 Score=22.65 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHh
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHS 69 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~ 69 (175)
--.+++.|.++|.+++|+++..-.++
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~ 134 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRR 134 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHH
Confidence 34567777777777777777776543
No 475
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=32.16 E-value=2.5e+02 Score=23.73 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=29.5
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~ 89 (175)
+...|. +|.-|.++|++++|.++..+.... .......|...++.+...
T Consensus 111 ~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 111 GDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 444554 455556888888888887555433 555566777777777665
No 476
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.01 E-value=75 Score=19.02 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=27.8
Q ss_pred cCCCchhHH-HHHHHHHhCCCcchHHHHHHHHHhcCC
Q 045063 37 SHGDLSSLN-SQLFSYTRSRNFPATWALFCYMHSTCL 72 (175)
Q Consensus 37 ~~~~~~~~~-~li~~~~~~g~~~~a~~l~~~m~~~~~ 72 (175)
++-+...|| +++..+.++.-.++|+++...|.++|-
T Consensus 26 ~~~~~~gy~PtV~D~L~rCdT~EEAlEii~yleKrGE 62 (98)
T COG4003 26 PKIDFSGYNPTVIDFLRRCDTEEEALEIINYLEKRGE 62 (98)
T ss_pred ccCCcCCCCchHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 334566664 678888888888999999999988864
No 477
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=31.75 E-value=1.4e+02 Score=19.85 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 045063 46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA 85 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~ 85 (175)
.+|..+.+.+.+..+.++++.+.+.|+..+..|..-.+.-
T Consensus 5 ~~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~e 44 (146)
T TIGR01529 5 ERIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRE 44 (146)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 3566777888889999999999888888777766555543
No 478
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=31.56 E-value=1.2e+02 Score=18.18 Aligned_cols=63 Identities=19% Similarity=0.146 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHH
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a 161 (175)
+..+++.|.+.|+ .+...+..+- .+....++|.++++.+..++...|....+++-..|..+-|
T Consensus 16 v~~ild~L~~~gv-lt~~~~e~I~---~~~t~~~qa~~Lld~L~trG~~Af~~F~~aL~~~~~~~La 78 (86)
T cd08323 16 TSYIMDHMISDGV-LTLDEEEKVK---SKATQKEKAVMLINMILTKDNHAYVSFYNALLHEGYKDLA 78 (86)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHH---cCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCChHHH
Confidence 3445566665554 2332222222 2445567777777777777777777777776665544433
No 479
>PHA03100 ankyrin repeat protein; Provisional
Probab=31.44 E-value=2.7e+02 Score=22.16 Aligned_cols=108 Identities=12% Similarity=0.101 Sum_probs=47.4
Q ss_pred CCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh--HHHHHHHHhcCCCchhHH
Q 045063 22 LPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT--FTPVLGACSALPAPERGK 96 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t--~~~ll~~~~~~~~~~~a~ 96 (175)
..|+.+.+..+++.-... +...++ .+...++.|. .-.++.+.+.+.|..++... -...+...++.|+.+
T Consensus 117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~--- 190 (480)
T PHA03100 117 KSNSYSIVEYLLDNGANVNIKNSDGEN-LLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID--- 190 (480)
T ss_pred ccChHHHHHHHHHcCCCCCccCCCCCc-HHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH---
Confidence 666666666666543322 222233 3333334441 12334444455565554321 122333444444433
Q ss_pred HHHHHHHHhCCCcchH--------HHHHHHHHHHhcCC--hHHHHHHHHh
Q 045063 97 QVHALMIKGGTDSEPV--------VKTALMDMYSKYGL--LGESVEAFKE 136 (175)
Q Consensus 97 ~~~~~m~~~~~~~~~~--------~~~~li~~~~~~g~--~~~a~~~~~~ 136 (175)
+.+.+.+.|..++.. .+.+.+...+..|. .+-+..+++.
T Consensus 191 -iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~ 239 (480)
T PHA03100 191 -VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY 239 (480)
T ss_pred -HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc
Confidence 334444455544422 11344444455666 5555555554
No 480
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.54 E-value=3e+02 Score=22.43 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 145 WNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
-..++++ .+.++.+.|..++.+|...|..|
T Consensus 247 i~~li~s-i~~~d~~~Al~~l~~ll~~Gedp 276 (472)
T PRK14962 247 VRDYINA-IFNGDVKRVFTVLDDVYYSGKDY 276 (472)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCH
Confidence 3445554 57799999999999999988765
No 481
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=30.53 E-value=1.5e+02 Score=19.88 Aligned_cols=43 Identities=5% Similarity=0.031 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC 86 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~ 86 (175)
+-..++.|. ..|-+.+...+.++|.+.|+..+...|+-++.-.
T Consensus 112 tlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 445555555 5578888999999999999999999998887543
No 482
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=30.41 E-value=57 Score=18.30 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=16.5
Q ss_pred CCcchHHHHHHHHHhcC-CCCCH
Q 045063 55 RNFPATWALFCYMHSTC-LNLTA 76 (175)
Q Consensus 55 g~~~~a~~l~~~m~~~~-~~~~~ 76 (175)
=|++.|+..|.++...| ++|+.
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhh
Confidence 47889999999998754 55543
No 483
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=30.15 E-value=2.4e+02 Score=21.23 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 143 VTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
.+|. ++++ ...|+...|..+++++...|..|
T Consensus 202 ~if~-l~da-i~~~~~~~A~~~l~~L~~~g~~p 232 (326)
T PRK07452 202 NSLQ-LADA-LLQGNTGKALALLDDLLDANEPA 232 (326)
T ss_pred cHHH-HHHH-HHCCCHHHHHHHHHHHHHCCCcH
Confidence 3444 5554 33466666666666666666544
No 484
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=29.89 E-value=56 Score=26.38 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=8.4
Q ss_pred HHhCCCcchHHHHHHHH
Q 045063 51 YTRSRNFPATWALFCYM 67 (175)
Q Consensus 51 ~~~~g~~~~a~~l~~~m 67 (175)
+.+.++++.|..++.+.
T Consensus 14 ~l~~~~fd~avdlysKa 30 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKA 30 (476)
T ss_pred hcccchHHHHHHHHHHH
Confidence 33444555555555554
No 485
>PRK13342 recombination factor protein RarA; Reviewed
Probab=29.80 E-value=2.8e+02 Score=21.90 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=26.6
Q ss_pred HHHHHHHHh---CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 45 NSQLFSYTR---SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 45 ~~li~~~~~---~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
-.+++++.+ .++.+.|+..+.+|.+.|..|....-..+..++-..|
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 344444444 3566777777777777776666555555554444443
No 486
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.80 E-value=3.5e+02 Score=22.95 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=41.9
Q ss_pred HhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-----------------CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 104 KGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-----------------FKDVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 104 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----------------~~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
+.|+..+......++... .|+...|...++... ..+...+-.++.+ ...++.++|..+++
T Consensus 195 ~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~da-i~~~~~~~al~ll~ 271 (614)
T PRK14971 195 KEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDA-LLAGKVSDSLLLFD 271 (614)
T ss_pred HcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 456666655555554433 466776666655431 1222333344554 45678999999999
Q ss_pred HHHhcccCC
Q 045063 167 AMTRERVEF 175 (175)
Q Consensus 167 ~m~~~g~~p 175 (175)
++...|..|
T Consensus 272 ~Ll~~g~~~ 280 (614)
T PRK14971 272 EILNKGFDG 280 (614)
T ss_pred HHHHcCCCH
Confidence 999888654
No 487
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.50 E-value=2.4e+02 Score=20.95 Aligned_cols=55 Identities=2% Similarity=-0.074 Sum_probs=31.3
Q ss_pred CcchhhhhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 12 AKTCISIADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYM 67 (175)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m 67 (175)
++.... .++-.+.+++|.++|.+... + --..|--.-....+.|+-.+|-.-|-++
T Consensus 17 ~s~gF~-lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA 80 (288)
T KOG1586|consen 17 GSGGFL-LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEA 80 (288)
T ss_pred cCCccc-ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 333333 67778899999999987542 1 1122444444555555555555555554
No 488
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=29.34 E-value=82 Score=16.54 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=14.7
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 045063 149 LSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~ 169 (175)
|......|+++.|.+..++..
T Consensus 8 i~~~i~~g~~~~a~~~~~~~~ 28 (58)
T smart00668 8 IRELILKGDWDEALEWLSSLK 28 (58)
T ss_pred HHHHHHcCCHHHHHHHHHHcC
Confidence 455567788888887776654
No 489
>PHA02884 ankyrin repeat protein; Provisional
Probab=29.31 E-value=2.3e+02 Score=21.48 Aligned_cols=111 Identities=9% Similarity=-0.076 Sum_probs=55.4
Q ss_pred CCCcchhhhhhcCCCChhHHHHHhhhccCCCc-------hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--h-H
Q 045063 10 FPAKTCISIADALPKRYVYTHQVFDEISHGDL-------SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--T-F 79 (175)
Q Consensus 10 ~~~~~~ll~~~~~~~~~~~a~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t-~ 79 (175)
-.-.++++...++.|+.+.+..+++.-..++. .-.+.+..+ ++.|+.+-+ +-+.+.|..++.. . -
T Consensus 30 ~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~A-a~~~~~eiv----klLL~~GADVN~~~~~~g 104 (300)
T PHA02884 30 KICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYA-IDCDNDDAA----KLLIRYGADVNRYAEEAK 104 (300)
T ss_pred cCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHH-HHcCCHHHH----HHHHHcCCCcCcccCCCC
Confidence 34455577777778888888777776554433 233444443 455554432 3334456666642 1 2
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH---HHHHHHHHHHhcCChHHH
Q 045063 80 TPVLGACSALPAPERGKQVHALMIKGGTDSEPV---VKTALMDMYSKYGLLGES 130 (175)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a 130 (175)
...+...+..+..+ +...+...|..++.. -++.+-.+ .+.+..+.+
T Consensus 105 ~TpLh~Aa~~~~~e----ivklLL~~GAdin~kd~~G~TpL~~A-~~~~~~~~~ 153 (300)
T PHA02884 105 ITPLYISVLHGCLK----CLEILLSYGADINIQTNDMVTPIELA-LMICNNFLA 153 (300)
T ss_pred CCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHH-HHhCChhHH
Confidence 23333344444433 334445556655543 34444433 333444433
No 490
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.21 E-value=2.6e+02 Score=21.81 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=51.8
Q ss_pred CCc-chHHHHHHHHHhcCCCCCH----hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063 55 RNF-PATWALFCYMHSTCLNLTA----YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122 (175)
Q Consensus 55 g~~-~~a~~l~~~m~~~~~~~~~----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 122 (175)
|.. ++++..+.++.+. + |++ .-|.++..-....|.++.+..+|++.+..|-.|-..+-..+++..-
T Consensus 116 Gcp~eei~~~L~~li~~-I-P~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 116 GCPKEEILATLSDLIKN-I-PDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CCCHHHHHHHHHHHHhc-C-chHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 544 4788888887665 3 444 3688888888888999999999999999999988888777777755
No 491
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=29.04 E-value=1.5e+02 Score=20.67 Aligned_cols=103 Identities=14% Similarity=0.001 Sum_probs=47.4
Q ss_pred hhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhHH
Q 045063 19 ADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERGK 96 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a~ 96 (175)
.|-..|......++-+++-+.....+ .......+...+-.+++...+. ..-.+...|..++.+... .+.++..
T Consensus 38 IFR~sG~~~~i~~l~~~~d~~~~~~~----~~~~~~~d~h~va~lLK~flReLPePLi~~~~y~~~~~~~~~-~~~~~~~ 112 (195)
T cd04384 38 IYRLSGIASNIQRLRHEFDSEQIPDL----TKDVYIQDIHSVSSLCKLYFRELPNPLLTYQLYEKFSEAVSA-ASDEERL 112 (195)
T ss_pred eeeCCCCHHHHHHHHHHHcCCCCCCc----ccccccccHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhc-CCHHHHH
Confidence 45556766666555555432111110 0001122333444444444333 111244566667766644 3333333
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCC
Q 045063 97 QVHALMIKGGTDSEPVVKTALMDMYSKYGL 126 (175)
Q Consensus 97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 126 (175)
+.+..+...=..++..+...++.-+.+.-.
T Consensus 113 ~~l~~li~~LP~~n~~~L~~L~~~L~~V~~ 142 (195)
T cd04384 113 EKIHDVIQQLPPPHYRTLEFLMRHLSRLAK 142 (195)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHh
Confidence 344545544345566677777766665443
No 492
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=29.01 E-value=1.7e+02 Score=19.21 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=21.2
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCC
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGT 107 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 107 (175)
.+..++-++...|+++.|..+.+..++.|.
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 455566677777777777777777777665
No 493
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.77 E-value=2.5e+02 Score=20.99 Aligned_cols=80 Identities=13% Similarity=-0.014 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---------CCCchhHHHHH
Q 045063 79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---------FKDVVTWNALL 149 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---------~~~~~~~~~li 149 (175)
-..-++.+...|++..|.++.....+. . -+..-|+++=+.-. ++.+-....+.+. .-|...|..++
T Consensus 130 ~~~~l~~ll~~~dy~~Al~li~~~~~~-l-~~l~~~~c~~~L~~---~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~ 204 (291)
T PF10475_consen 130 TQSRLQELLEEGDYPGALDLIEECQQL-L-EELKGYSCVRHLSS---QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQ 204 (291)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH-H-HhcccchHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 334456667788888888888777653 1 11112222221111 1222222222221 34889999999
Q ss_pred HHHHhcCChHHHHH
Q 045063 150 SSFLRHGLAKEAFG 163 (175)
Q Consensus 150 ~~~~~~g~~~~a~~ 163 (175)
.+|.-.|+...+.+
T Consensus 205 ~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 205 EAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHhhhHHHHH
Confidence 99999998766653
No 494
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=28.61 E-value=1.7e+02 Score=19.07 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcc-CCCchhH-HHHHHHHHhcCChHHHHHHHHHHH
Q 045063 113 VKTALMDMYSKYGLLGESVEAFKEIE-FKDVVTW-NALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+--++..++.-.|..+.|.+++.... .++-... .-++..|.+..+.++..++-++..
T Consensus 68 cvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 68 CVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 55667777777888888888777655 2332222 347777887777777776655543
No 495
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=28.58 E-value=1e+02 Score=18.49 Aligned_cols=42 Identities=7% Similarity=-0.066 Sum_probs=21.9
Q ss_pred HHhhhccCCCchhHHHHHHHHHhCCC---cchHHHHHHHHHhcCC
Q 045063 31 QVFDEISHGDLSSLNSQLFSYTRSRN---FPATWALFCYMHSTCL 72 (175)
Q Consensus 31 ~~f~~~~~~~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~ 72 (175)
.+++.+.+.++.+-.-.=...++... .+.|..+++-....|.
T Consensus 20 ~l~d~L~q~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~rG~ 64 (86)
T cd08785 20 RLTPYLRQCKVLDEQDEEEVLSSPRLPIRANRTGRLLDILATRGK 64 (86)
T ss_pred HHHHHHHhcCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHhcCc
Confidence 35555555555555544444444442 2566666666555543
No 496
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=28.35 E-value=2.8e+02 Score=21.48 Aligned_cols=45 Identities=4% Similarity=-0.078 Sum_probs=23.9
Q ss_pred cCCCchhHHHHHHHHHHhCCCcc---hHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 88 ALPAPERGKQVHALMIKGGTDSE---PVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
..|+++.+....+.++- |+ ...|..++--....+.++.|..++.+
T Consensus 52 ~sG~WD~VL~~vqsLKL----P~kkL~dLYEqivlEliELREL~tAR~~lRQ 99 (508)
T KOG0275|consen 52 NSGHWDTVLKTVQSLKL----PDKKLIDLYEQIVLELIELRELGTARSLLRQ 99 (508)
T ss_pred ccCchHHHHHHHHhccC----chhHHHHHHHHHHHHHHHHHhhhHHHHHHhc
Confidence 35566666665555431 22 23455555555555666666665554
No 497
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=28.18 E-value=1.3e+02 Score=17.57 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=23.2
Q ss_pred chHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHH
Q 045063 58 PATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVH 99 (175)
Q Consensus 58 ~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~ 99 (175)
..+.++|..|.+.|. .+..-...+.+.+...|+.+.+..+.
T Consensus 37 ~~~~dlf~~Le~~~~-i~~~nl~~L~~lL~~i~R~DL~~~i~ 77 (84)
T PF01335_consen 37 KSGLDLFEELEKRGL-ISPDNLSLLKELLKRIGRPDLLKKIE 77 (84)
T ss_dssp SSHHHHHHHHHHTTS-SSTTBHHHHHHHHHHTT-HHHHHHHH
T ss_pred chHHHHHHHHHHcCC-CCCccHHHHHHHHHHhCHHHHHHHHH
Confidence 457777777766643 22233455566666666666665553
No 498
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=28.05 E-value=3.7e+02 Score=22.72 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=19.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 147 ALLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
.++. ....|+.+.|..+++++...|..|
T Consensus 264 ~L~~-ai~~gd~~~Al~~l~~l~~~G~~p 291 (598)
T PRK09111 264 DLFE-ALMRGDVAAALAEFRAQYDAGADP 291 (598)
T ss_pred HHHH-HHHcCCHHHHHHHHHHHHHcCCCH
Confidence 3444 345578888888888888877654
No 499
>cd08812 CARD_RIG-I_like Caspase activation and recruitment domains found in RIG-I-like DEAD box helicases. Caspase activation and recruitment domains (CARDs) found in Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. These helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I and MDA5 have been shown to recognize different sets of viruses. MDA5 and RIG-I associate with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mec
Probab=27.89 E-value=1.4e+02 Score=17.85 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=23.3
Q ss_pred cCChHHHHHHHHhccC-CCchhHHHHHHHHHhcCChHHH
Q 045063 124 YGLLGESVEAFKEIEF-KDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 124 ~g~~~~a~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~a 161 (175)
.|..+.|..+++.+.+ ...-.+..++.++-..|.-+.|
T Consensus 47 ~g~~~aa~~Ll~~L~~~r~~~wf~~Fl~AL~~~g~~~la 85 (88)
T cd08812 47 KGNIAAAEELLDRLERCDKPGWFQAFLDALRRTGNDDLA 85 (88)
T ss_pred cChHHHHHHHHHHHHHhccCCcHHHHHHHHHHcCCccHH
Confidence 3666666666666665 4555666666666666654443
No 500
>KOG3154 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.82 E-value=1.5e+02 Score=21.44 Aligned_cols=54 Identities=7% Similarity=-0.020 Sum_probs=42.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCch--hHHHHHHHHHhCCCcchHHHHHHHHHh
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLS--SLNSQLFSYTRSRNFPATWALFCYMHS 69 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~a~~l~~~m~~ 69 (175)
|-.+++-+|-.++|..+++.+..-..+ .-.-|+..|.++.+.++..++=.+.++
T Consensus 153 laA~l~I~G~~e~A~~lL~~F~wG~~Fl~lN~~lLd~Ya~C~~s~ev~~~qn~~Le 208 (263)
T KOG3154|consen 153 LAACLYICGFPEEARELLDKFKWGHAFLELNKDLLDEYAKCASSAEVVEVQNEFLE 208 (263)
T ss_pred HHhHeeeecChhHHHHHHhcCcchHHHHHHhHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 777788899999999999998875433 245688999999998888777666544
Done!