Query 045063
Match_columns 175
No_of_seqs 125 out of 1239
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 16:36:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.4E-36 8.3E-41 236.6 16.5 161 15-175 31-208 (501)
2 4g26_A Pentatricopeptide repea 100.0 8.4E-31 2.9E-35 205.3 15.2 149 27-175 7-173 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 4.5E-25 1.6E-29 180.6 4.2 144 13-156 130-286 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 4.8E-24 1.6E-28 174.6 8.1 116 41-156 127-250 (1134)
5 2xpi_A Anaphase-promoting comp 99.7 7.7E-17 2.6E-21 127.6 13.6 152 16-169 278-434 (597)
6 2xpi_A Anaphase-promoting comp 99.7 2.9E-16 9.8E-21 124.3 14.9 153 16-170 379-544 (597)
7 3mkr_A Coatomer subunit epsilo 99.4 1.6E-11 5.6E-16 89.8 16.7 163 4-171 90-264 (291)
8 1w3b_A UDP-N-acetylglucosamine 99.4 1.3E-11 4.6E-16 92.8 16.2 153 16-170 209-367 (388)
9 2vq2_A PILW, putative fimbrial 99.4 5.6E-11 1.9E-15 82.3 15.8 153 16-169 14-174 (225)
10 2ho1_A Type 4 fimbrial biogene 99.4 5.7E-11 1.9E-15 84.1 16.0 155 16-171 77-238 (252)
11 3as5_A MAMA; tetratricopeptide 99.4 6.6E-11 2.2E-15 79.3 15.5 153 16-170 14-172 (186)
12 1w3b_A UDP-N-acetylglucosamine 99.4 4.3E-11 1.5E-15 90.0 16.0 154 16-170 141-333 (388)
13 2y4t_A DNAJ homolog subfamily 99.4 3.4E-11 1.2E-15 92.0 14.9 152 16-170 66-239 (450)
14 2y4t_A DNAJ homolog subfamily 99.3 3E-11 1E-15 92.3 14.0 151 16-170 183-357 (450)
15 2ho1_A Type 4 fimbrial biogene 99.3 5.7E-11 2E-15 84.0 14.5 155 16-171 43-204 (252)
16 2q7f_A YRRB protein; TPR, prot 99.3 9.3E-11 3.2E-15 82.2 15.3 154 16-171 63-222 (243)
17 2vq2_A PILW, putative fimbrial 99.3 2.9E-10 9.8E-15 78.6 16.2 155 16-171 48-211 (225)
18 3vtx_A MAMA; tetratricopeptide 99.3 2.5E-10 8.5E-15 77.2 15.3 154 16-171 11-170 (184)
19 1b89_A Protein (clathrin heavy 99.3 3.1E-12 1E-16 98.0 5.8 77 75-162 121-197 (449)
20 3mkr_A Coatomer subunit epsilo 99.3 1E-10 3.5E-15 85.5 13.1 148 16-171 71-229 (291)
21 4eqf_A PEX5-related protein; a 99.3 1.3E-10 4.5E-15 86.6 13.8 61 110-170 212-275 (365)
22 2q7f_A YRRB protein; TPR, prot 99.3 1.6E-10 5.3E-15 81.1 13.0 154 16-171 29-188 (243)
23 2fo7_A Synthetic consensus TPR 99.2 6.6E-10 2.3E-14 70.3 14.4 127 43-171 3-132 (136)
24 1b89_A Protein (clathrin heavy 99.2 7E-11 2.4E-15 90.5 11.0 140 11-169 95-234 (449)
25 2pl2_A Hypothetical conserved 99.2 1.2E-10 4E-15 81.5 11.4 150 18-169 13-178 (217)
26 4eqf_A PEX5-related protein; a 99.2 1.6E-10 5.3E-15 86.2 12.5 154 16-170 105-309 (365)
27 1fch_A Peroxisomal targeting s 99.2 1.1E-09 3.8E-14 81.3 16.1 154 16-170 70-279 (368)
28 3hym_B Cell division cycle pro 99.2 1.2E-09 4.2E-14 79.7 15.7 153 16-170 62-221 (330)
29 3hym_B Cell division cycle pro 99.2 1.8E-09 6.3E-14 78.7 16.6 152 16-169 96-263 (330)
30 1fch_A Peroxisomal targeting s 99.2 1.4E-09 4.7E-14 80.8 16.0 154 16-170 104-313 (368)
31 3uq3_A Heat shock protein STI1 99.2 1.1E-09 3.6E-14 77.3 14.6 154 16-170 44-235 (258)
32 1xnf_A Lipoprotein NLPI; TPR, 99.2 8.7E-10 3E-14 78.6 14.3 153 16-170 11-172 (275)
33 3uq3_A Heat shock protein STI1 99.2 8.6E-10 2.9E-14 77.8 14.0 156 16-171 11-202 (258)
34 2pl2_A Hypothetical conserved 99.2 7.9E-10 2.7E-14 77.2 13.6 152 16-170 45-213 (217)
35 4gyw_A UDP-N-acetylglucosamine 99.2 6.7E-10 2.3E-14 90.6 14.9 152 16-170 15-173 (723)
36 3u4t_A TPR repeat-containing p 99.1 7E-09 2.4E-13 73.9 16.8 155 16-171 9-171 (272)
37 3cv0_A Peroxisome targeting si 99.1 7.7E-10 2.6E-14 80.7 11.3 148 19-168 147-312 (327)
38 3cv0_A Peroxisome targeting si 99.1 6.2E-09 2.1E-13 75.8 16.1 91 78-169 174-267 (327)
39 2gw1_A Mitochondrial precursor 99.1 3E-09 1E-13 82.3 14.2 153 16-170 243-400 (514)
40 3fp2_A TPR repeat-containing p 99.1 5.6E-09 1.9E-13 81.3 15.1 153 16-170 249-406 (537)
41 3ieg_A DNAJ homolog subfamily 99.1 5.8E-09 2E-13 76.8 14.4 152 16-170 43-216 (359)
42 2gw1_A Mitochondrial precursor 99.1 2.3E-09 7.8E-14 82.9 12.6 147 22-171 201-367 (514)
43 2ond_A Cleavage stimulation fa 99.1 6.1E-09 2.1E-13 76.4 14.2 154 16-171 105-270 (308)
44 3nf1_A KLC 1, kinesin light ch 99.1 2.3E-09 7.9E-14 77.6 11.8 155 16-170 75-306 (311)
45 3ieg_A DNAJ homolog subfamily 99.1 6.7E-09 2.3E-13 76.4 14.2 153 16-171 9-183 (359)
46 3nf1_A KLC 1, kinesin light ch 99.1 4.4E-09 1.5E-13 76.1 12.8 155 16-170 33-223 (311)
47 1xnf_A Lipoprotein NLPI; TPR, 99.0 5.8E-09 2E-13 74.3 13.0 153 16-171 49-244 (275)
48 4abn_A Tetratricopeptide repea 99.0 4.3E-09 1.5E-13 81.9 13.2 152 16-170 108-286 (474)
49 2fo7_A Synthetic consensus TPR 99.0 4.6E-09 1.6E-13 66.4 10.6 122 15-138 6-130 (136)
50 3edt_B KLC 2, kinesin light ch 99.0 6.2E-09 2.1E-13 74.1 11.9 155 16-170 49-280 (283)
51 1ouv_A Conserved hypothetical 99.0 4.2E-08 1.4E-12 70.3 15.5 143 23-171 55-215 (273)
52 3as5_A MAMA; tetratricopeptide 99.0 2.6E-08 8.9E-13 66.4 12.8 128 42-171 9-139 (186)
53 3edt_B KLC 2, kinesin light ch 98.9 1.8E-08 6.2E-13 71.6 12.2 150 21-170 12-197 (283)
54 3fp2_A TPR repeat-containing p 98.9 5.7E-08 1.9E-12 75.6 15.5 145 24-171 216-373 (537)
55 2vsy_A XCC0866; transferase, g 98.9 4.8E-08 1.7E-12 77.3 15.1 147 23-171 2-157 (568)
56 1ouv_A Conserved hypothetical 98.9 1.1E-07 3.6E-12 68.1 15.6 146 19-170 15-178 (273)
57 3vtx_A MAMA; tetratricopeptide 98.9 1.1E-07 3.8E-12 64.0 14.9 130 40-171 4-136 (184)
58 2ond_A Cleavage stimulation fa 98.9 5.3E-08 1.8E-12 71.3 14.2 147 22-171 69-232 (308)
59 4i17_A Hypothetical protein; T 98.9 8.8E-08 3E-12 66.8 14.4 140 16-158 13-169 (228)
60 4i17_A Hypothetical protein; T 98.9 2.4E-07 8.2E-12 64.5 15.2 131 40-171 6-146 (228)
61 2r5s_A Uncharacterized protein 98.9 7.1E-08 2.4E-12 64.8 12.0 152 16-170 12-172 (176)
62 2h6f_A Protein farnesyltransfe 98.8 1.2E-07 4E-12 72.0 13.3 153 16-170 103-268 (382)
63 3gw4_A Uncharacterized protein 98.8 7.1E-08 2.4E-12 65.6 11.0 150 21-170 3-175 (203)
64 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.2E-07 7.5E-12 63.8 13.3 123 16-139 12-149 (213)
65 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.2E-07 7.5E-12 63.8 13.1 124 43-171 8-150 (213)
66 3qky_A Outer membrane assembly 98.8 1.1E-07 3.7E-12 67.8 11.7 155 16-171 21-224 (261)
67 4gyw_A UDP-N-acetylglucosamine 98.8 2.1E-07 7.2E-12 76.0 14.7 129 40-171 8-140 (723)
68 3u3w_A Transcriptional activat 98.8 2.4E-07 8.4E-12 67.2 13.1 154 16-169 81-264 (293)
69 2ooe_A Cleavage stimulation fa 98.8 1.8E-07 6.1E-12 73.4 13.0 153 16-170 327-491 (530)
70 3u4t_A TPR repeat-containing p 98.7 2.3E-07 8E-12 65.9 12.4 128 43-171 5-137 (272)
71 4abn_A Tetratricopeptide repea 98.7 1.8E-08 6.2E-13 78.4 6.9 152 16-168 143-318 (474)
72 2pzi_A Probable serine/threoni 98.7 1.3E-07 4.3E-12 76.8 12.1 147 21-170 402-562 (681)
73 4ga2_A E3 SUMO-protein ligase 98.7 3E-07 1E-11 60.4 11.5 137 19-157 6-149 (150)
74 2yhc_A BAMD, UPF0169 lipoprote 98.7 6.2E-07 2.1E-11 62.6 13.7 155 16-172 10-214 (225)
75 3mv2_B Coatomer subunit epsilo 98.7 9.7E-07 3.3E-11 64.9 15.0 140 29-170 85-239 (310)
76 3qou_A Protein YBBN; thioredox 98.7 1.8E-07 6.2E-12 68.0 11.0 151 16-169 123-282 (287)
77 1a17_A Serine/threonine protei 98.7 1E-06 3.4E-11 57.8 13.5 127 41-169 13-144 (166)
78 2ooe_A Cleavage stimulation fa 98.7 5.8E-07 2E-11 70.5 13.9 146 23-171 292-454 (530)
79 1qqe_A Vesicular transport pro 98.7 1.9E-07 6.4E-12 68.0 10.3 155 16-170 43-227 (292)
80 1na0_A Designed protein CTPR3; 98.7 1.2E-06 4.1E-11 54.3 12.4 110 41-152 9-121 (125)
81 2h6f_A Protein farnesyltransfe 98.6 9.3E-07 3.2E-11 67.0 13.5 130 40-171 96-229 (382)
82 3mv2_B Coatomer subunit epsilo 98.6 3.9E-07 1.3E-11 67.0 10.8 150 16-171 106-282 (310)
83 3ulq_A Response regulator aspa 98.6 3.9E-07 1.3E-11 68.4 11.1 153 18-170 111-292 (383)
84 3ulq_A Response regulator aspa 98.6 5.3E-07 1.8E-11 67.7 11.8 155 16-170 190-367 (383)
85 3urz_A Uncharacterized protein 98.6 5.2E-07 1.8E-11 62.3 10.3 152 18-171 12-186 (208)
86 2vyi_A SGTA protein; chaperone 98.6 1.9E-06 6.4E-11 53.8 11.9 117 40-158 11-130 (131)
87 2lni_A Stress-induced-phosphop 98.6 3.3E-06 1.1E-10 53.0 13.0 115 40-156 15-132 (133)
88 2fbn_A 70 kDa peptidylprolyl i 98.5 4.2E-07 1.4E-11 62.1 8.4 155 16-171 10-186 (198)
89 3gyz_A Chaperone protein IPGC; 98.5 4.6E-06 1.6E-10 54.9 13.1 92 78-170 38-132 (151)
90 1p5q_A FKBP52, FK506-binding p 98.5 2.6E-06 9E-11 63.3 12.6 146 24-170 127-293 (336)
91 4a1s_A PINS, partner of inscut 98.5 2E-07 7E-12 70.2 6.5 155 16-170 54-251 (411)
92 1na0_A Designed protein CTPR3; 98.5 3.7E-06 1.3E-10 52.0 11.1 95 76-171 9-106 (125)
93 2ifu_A Gamma-SNAP; membrane fu 98.5 3E-06 1E-10 62.0 12.1 153 16-169 42-222 (307)
94 2e2e_A Formate-dependent nitri 98.5 2E-06 6.9E-11 57.4 10.2 119 18-138 18-142 (177)
95 2e2e_A Formate-dependent nitri 98.5 2.3E-06 7.8E-11 57.2 10.4 118 52-171 21-144 (177)
96 2qfc_A PLCR protein; TPR, HTH, 98.5 1.1E-05 3.7E-10 58.5 14.6 153 16-168 81-263 (293)
97 1qqe_A Vesicular transport pro 98.5 2.3E-06 7.9E-11 62.1 10.9 154 16-169 83-267 (292)
98 3q15_A PSP28, response regulat 98.4 3.3E-06 1.1E-10 63.4 11.9 152 19-170 110-289 (378)
99 3qky_A Outer membrane assembly 98.4 1.5E-05 5.3E-10 56.5 14.6 133 39-171 13-177 (261)
100 3q15_A PSP28, response regulat 98.4 3.3E-06 1.1E-10 63.3 11.5 155 16-170 188-364 (378)
101 4gco_A Protein STI-1; structur 98.4 5.8E-06 2E-10 52.5 10.9 95 42-138 14-108 (126)
102 3ro2_A PINS homolog, G-protein 98.4 1.4E-06 4.7E-11 63.1 8.8 84 20-103 15-110 (338)
103 4a1s_A PINS, partner of inscut 98.4 6.2E-07 2.1E-11 67.5 7.0 155 16-170 172-371 (411)
104 4gco_A Protein STI-1; structur 98.4 1.2E-05 4E-10 51.1 11.9 98 72-170 8-109 (126)
105 3sf4_A G-protein-signaling mod 98.4 1.1E-06 3.7E-11 65.7 7.9 155 16-170 133-335 (406)
106 2pzi_A Probable serine/threoni 98.4 1.5E-06 5.3E-11 70.5 9.3 139 16-157 439-583 (681)
107 3ro2_A PINS homolog, G-protein 98.4 6.5E-07 2.2E-11 64.9 6.4 145 26-170 159-331 (338)
108 3qou_A Protein YBBN; thioredox 98.4 6.4E-06 2.2E-10 59.7 11.6 147 22-171 98-248 (287)
109 1a17_A Serine/threonine protei 98.4 6E-06 2.1E-10 54.0 10.4 120 16-137 19-143 (166)
110 3sf4_A G-protein-signaling mod 98.3 1.6E-06 5.5E-11 64.8 8.0 155 16-170 53-255 (406)
111 1xi4_A Clathrin heavy chain; a 98.3 1.4E-05 4.8E-10 69.0 14.0 136 16-167 1111-1246(1630)
112 4ga2_A E3 SUMO-protein ligase 98.3 1.5E-06 5.1E-11 57.0 6.6 118 50-170 6-128 (150)
113 2kck_A TPR repeat; tetratricop 98.3 1.2E-05 4.2E-10 48.7 10.5 95 42-138 7-104 (112)
114 3ro3_A PINS homolog, G-protein 98.3 4.4E-06 1.5E-10 54.0 8.8 129 42-170 10-157 (164)
115 2vgx_A Chaperone SYCD; alterna 98.3 7.1E-06 2.4E-10 53.6 9.7 97 40-138 20-116 (148)
116 3rjv_A Putative SEL1 repeat pr 98.3 2.4E-05 8.2E-10 54.1 12.9 154 16-173 24-199 (212)
117 2vyi_A SGTA protein; chaperone 98.3 1E-05 3.6E-10 50.3 10.1 110 16-127 18-130 (131)
118 2kck_A TPR repeat; tetratricop 98.3 1.2E-05 4.2E-10 48.7 10.1 95 76-171 6-106 (112)
119 4e6h_A MRNA 3'-END-processing 98.3 2E-05 6.9E-10 63.9 13.6 154 16-171 384-570 (679)
120 2lni_A Stress-induced-phosphop 98.3 1.9E-05 6.6E-10 49.4 11.0 96 75-171 15-113 (133)
121 1hz4_A MALT regulatory protein 98.3 4.3E-05 1.5E-09 56.8 14.5 155 16-170 99-281 (373)
122 3gyz_A Chaperone protein IPGC; 98.3 1.4E-05 4.7E-10 52.6 10.5 97 40-138 35-131 (151)
123 3u3w_A Transcriptional activat 98.3 5.9E-05 2E-09 54.5 14.8 127 44-170 78-224 (293)
124 3rjv_A Putative SEL1 repeat pr 98.3 4.8E-05 1.6E-09 52.5 13.7 137 28-171 4-158 (212)
125 3q49_B STIP1 homology and U bo 98.3 3.4E-05 1.1E-09 48.9 12.0 98 39-138 7-104 (137)
126 2xcb_A PCRH, regulatory protei 98.2 2.7E-05 9.3E-10 50.1 11.3 97 40-138 17-113 (142)
127 1elr_A TPR2A-domain of HOP; HO 98.2 1E-05 3.5E-10 50.4 8.9 96 42-138 5-106 (131)
128 2xm6_A Protein corresponding t 98.2 7.9E-05 2.7E-09 57.8 15.5 13 55-67 129-141 (490)
129 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.2E-06 7.5E-11 66.4 6.6 145 24-169 248-413 (457)
130 2vgx_A Chaperone SYCD; alterna 98.2 9.9E-06 3.4E-10 52.9 8.8 91 78-169 23-116 (148)
131 3upv_A Heat shock protein STI1 98.2 3E-05 1E-09 48.6 10.8 95 42-138 5-99 (126)
132 1elw_A TPR1-domain of HOP; HOP 98.2 4.8E-05 1.6E-09 46.4 11.5 96 42-139 5-100 (118)
133 1elw_A TPR1-domain of HOP; HOP 98.2 4E-05 1.4E-09 46.7 11.1 95 76-171 4-101 (118)
134 2ifu_A Gamma-SNAP; membrane fu 98.2 1.6E-05 5.6E-10 58.0 10.7 126 44-170 39-183 (307)
135 3q49_B STIP1 homology and U bo 98.2 4.7E-05 1.6E-09 48.2 11.5 93 76-169 9-104 (137)
136 2xm6_A Protein corresponding t 98.2 0.00011 3.7E-09 57.0 15.6 144 23-172 56-217 (490)
137 3sz7_A HSC70 cochaperone (SGT) 98.2 3.7E-05 1.2E-09 50.6 11.1 97 40-138 10-106 (164)
138 2dba_A Smooth muscle cell asso 98.2 5.7E-05 1.9E-09 48.2 11.7 97 39-138 26-126 (148)
139 2vsy_A XCC0866; transferase, g 98.2 2.3E-05 7.9E-10 62.0 11.6 121 16-138 29-155 (568)
140 3upv_A Heat shock protein STI1 98.2 4.6E-05 1.6E-09 47.7 10.7 91 78-169 6-99 (126)
141 1p5q_A FKBP52, FK506-binding p 98.1 1.9E-05 6.5E-10 58.6 9.7 120 16-137 153-291 (336)
142 2xcb_A PCRH, regulatory protei 98.1 5.1E-05 1.7E-09 48.8 10.6 90 79-169 21-113 (142)
143 1elr_A TPR2A-domain of HOP; HO 98.1 5.3E-05 1.8E-09 47.1 10.4 94 77-171 5-108 (131)
144 3sz7_A HSC70 cochaperone (SGT) 98.1 5.2E-05 1.8E-09 49.9 10.8 89 16-105 17-108 (164)
145 1wao_1 Serine/threonine protei 98.1 4.8E-05 1.6E-09 59.2 11.5 120 14-135 10-134 (477)
146 2dba_A Smooth muscle cell asso 98.1 0.00018 6.1E-09 45.8 12.5 93 76-170 28-127 (148)
147 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00021 7.2E-09 51.6 14.1 130 41-170 75-224 (293)
148 2yhc_A BAMD, UPF0169 lipoprote 98.1 0.00016 5.5E-09 50.2 12.9 129 43-171 6-176 (225)
149 1hz4_A MALT regulatory protein 98.1 5.8E-05 2E-09 56.1 11.3 153 18-170 22-202 (373)
150 1xi4_A Clathrin heavy chain; a 98.1 0.0001 3.6E-09 63.8 13.5 142 16-168 1055-1221(1630)
151 4gcn_A Protein STI-1; structur 98.0 6.8E-05 2.3E-09 47.5 9.9 94 43-137 10-109 (127)
152 1wao_1 Serine/threonine protei 98.0 1.8E-05 6.3E-10 61.6 8.5 118 47-166 12-134 (477)
153 3urz_A Uncharacterized protein 98.0 6.6E-05 2.3E-09 51.6 10.4 108 47-157 10-137 (208)
154 2r5s_A Uncharacterized protein 98.0 0.00012 4.3E-09 48.7 11.0 119 16-136 46-169 (176)
155 3k9i_A BH0479 protein; putativ 98.0 2.3E-05 7.7E-10 48.8 6.8 85 53-138 2-88 (117)
156 4gcn_A Protein STI-1; structur 98.0 8.6E-05 3E-09 47.0 9.5 93 77-170 9-111 (127)
157 1hxi_A PEX5, peroxisome target 98.0 8.4E-05 2.9E-09 46.6 9.4 93 44-138 20-112 (121)
158 4f3v_A ESX-1 secretion system 98.0 6.2E-05 2.1E-09 54.6 9.6 132 16-148 108-247 (282)
159 1hxi_A PEX5, peroxisome target 98.0 8.9E-05 3.1E-09 46.5 9.3 93 78-171 19-114 (121)
160 4b4t_Q 26S proteasome regulato 98.0 0.00014 4.8E-09 55.0 11.7 152 18-169 12-202 (434)
161 3n71_A Histone lysine methyltr 98.0 6.8E-05 2.3E-09 58.6 10.1 122 50-171 318-464 (490)
162 2xev_A YBGF; tetratricopeptide 97.9 0.00033 1.1E-08 43.6 11.4 93 45-138 6-103 (129)
163 2xev_A YBGF; tetratricopeptide 97.9 0.00032 1.1E-08 43.7 11.2 89 17-105 9-105 (129)
164 3k9i_A BH0479 protein; putativ 97.9 3.1E-05 1.1E-09 48.1 5.9 83 22-105 2-90 (117)
165 3gw4_A Uncharacterized protein 97.9 2.4E-05 8.3E-10 52.8 5.7 123 16-138 32-174 (203)
166 2c2l_A CHIP, carboxy terminus 97.9 0.00037 1.3E-08 50.2 12.3 97 40-138 3-99 (281)
167 2fbn_A 70 kDa peptidylprolyl i 97.9 8.3E-05 2.8E-09 50.5 8.2 120 16-137 44-183 (198)
168 3ro3_A PINS homolog, G-protein 97.8 6.8E-05 2.3E-09 48.2 7.3 122 16-137 15-155 (164)
169 4e6h_A MRNA 3'-END-processing 97.8 0.00017 5.9E-09 58.6 10.9 151 21-171 354-533 (679)
170 2if4_A ATFKBP42; FKBP-like, al 97.8 0.00023 7.8E-09 52.8 10.6 128 41-171 179-328 (338)
171 4g1t_A Interferon-induced prot 97.8 0.00012 4.3E-09 55.9 9.1 51 19-69 222-275 (472)
172 4f3v_A ESX-1 secretion system 97.8 0.00021 7.3E-09 51.8 9.2 123 46-171 107-237 (282)
173 2l6j_A TPR repeat-containing p 97.7 4.7E-05 1.6E-09 46.2 5.0 92 42-136 5-103 (111)
174 3rkv_A Putative peptidylprolyl 97.7 0.00055 1.9E-08 44.7 10.1 97 41-138 11-124 (162)
175 4g1t_A Interferon-induced prot 97.7 0.00094 3.2E-08 51.0 12.7 149 21-171 149-363 (472)
176 1ihg_A Cyclophilin 40; ppiase 97.7 0.00034 1.2E-08 52.6 9.9 121 42-163 224-362 (370)
177 3n71_A Histone lysine methyltr 97.7 0.00014 4.7E-09 56.9 7.8 121 19-139 318-463 (490)
178 3dra_A Protein farnesyltransfe 97.7 0.0082 2.8E-07 44.0 17.1 146 23-170 123-286 (306)
179 2c2l_A CHIP, carboxy terminus 97.6 0.00067 2.3E-08 48.8 10.5 89 16-105 10-101 (281)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00033 1.1E-08 54.1 9.2 121 16-138 274-413 (457)
181 3e4b_A ALGK; tetratricopeptide 97.6 0.002 6.7E-08 49.7 13.2 148 16-172 182-352 (452)
182 1ihg_A Cyclophilin 40; ppiase 97.6 0.0004 1.4E-08 52.3 8.8 115 16-132 229-362 (370)
183 4b4t_Q 26S proteasome regulato 97.6 0.00099 3.4E-08 50.3 10.8 155 16-170 61-244 (434)
184 2kat_A Uncharacterized protein 97.5 0.0013 4.3E-08 40.3 9.1 79 58-138 2-80 (115)
185 3rkv_A Putative peptidylprolyl 97.5 0.0012 4.1E-08 43.1 9.5 87 18-105 19-126 (162)
186 2l6j_A TPR repeat-containing p 97.5 7.8E-05 2.7E-09 45.2 3.2 92 75-167 3-103 (111)
187 3e4b_A ALGK; tetratricopeptide 97.5 0.0013 4.6E-08 50.6 10.7 151 16-172 41-209 (452)
188 1klx_A Cysteine rich protein B 97.4 0.0043 1.5E-07 39.6 11.4 109 56-172 10-127 (138)
189 2kat_A Uncharacterized protein 97.4 0.0024 8E-08 39.1 9.8 76 28-104 3-81 (115)
190 2hr2_A Hypothetical protein; a 97.4 0.0028 9.4E-08 41.9 10.1 95 43-137 13-128 (159)
191 2hr2_A Hypothetical protein; a 97.4 0.0025 8.6E-08 42.1 9.7 94 77-170 12-130 (159)
192 2if4_A ATFKBP42; FKBP-like, al 97.4 0.0018 6E-08 48.0 10.0 92 77-170 180-292 (338)
193 3ma5_A Tetratricopeptide repea 97.3 0.0022 7.7E-08 38.4 8.0 62 76-138 7-68 (100)
194 2uy1_A Cleavage stimulation fa 97.2 0.0089 3E-07 46.7 13.0 124 42-170 287-412 (493)
195 1na3_A Designed protein CTPR2; 97.2 0.0047 1.6E-07 35.5 9.1 61 43-104 11-71 (91)
196 1na3_A Designed protein CTPR2; 97.0 0.0083 2.8E-07 34.4 8.7 78 76-154 9-89 (91)
197 3qwp_A SET and MYND domain-con 97.0 0.0045 1.5E-07 47.6 8.7 92 47-138 293-398 (429)
198 3qww_A SET and MYND domain-con 96.9 0.006 2.1E-07 46.9 9.3 84 54-137 311-408 (433)
199 3ma5_A Tetratricopeptide repea 96.9 0.0053 1.8E-07 36.7 7.2 85 40-125 6-91 (100)
200 3qww_A SET and MYND domain-con 96.8 0.0078 2.7E-07 46.3 8.7 83 88-170 310-410 (433)
201 1klx_A Cysteine rich protein B 96.8 0.014 4.9E-07 37.1 8.7 112 20-139 5-125 (138)
202 3dra_A Protein farnesyltransfe 96.5 0.15 5E-06 37.3 15.4 142 27-170 50-214 (306)
203 3qwp_A SET and MYND domain-con 96.4 0.012 4E-07 45.2 7.6 87 83-169 294-398 (429)
204 1dce_A Protein (RAB geranylger 96.4 0.16 5.6E-06 40.3 14.2 146 23-170 42-220 (567)
205 1zu2_A Mitochondrial import re 96.3 0.028 9.7E-07 37.0 7.8 71 92-170 62-146 (158)
206 3dss_A Geranylgeranyl transfer 96.2 0.23 7.7E-06 36.8 13.2 144 26-171 90-267 (331)
207 3mkq_A Coatomer beta'-subunit; 96.2 0.025 8.4E-07 46.2 8.6 41 21-64 610-652 (814)
208 3mkq_A Coatomer beta'-subunit; 96.1 0.025 8.4E-07 46.2 8.4 44 53-102 664-707 (814)
209 3q7a_A Farnesyltransferase alp 96.1 0.28 9.7E-06 36.5 14.1 144 25-170 140-330 (349)
210 2uy1_A Cleavage stimulation fa 96.1 0.12 4.1E-06 40.3 11.7 43 28-70 197-242 (493)
211 2kc7_A BFR218_protein; tetratr 96.0 0.031 1.1E-06 32.7 6.6 54 50-104 9-63 (99)
212 3q7a_A Farnesyltransferase alp 95.8 0.38 1.3E-05 35.8 13.7 127 44-172 57-197 (349)
213 2kc7_A BFR218_protein; tetratr 95.7 0.047 1.6E-06 31.9 6.6 55 83-138 7-62 (99)
214 4gns_B Protein CSD3, chitin bi 95.6 0.067 2.3E-06 44.0 8.8 121 16-138 254-398 (754)
215 1zu2_A Mitochondrial import re 95.5 0.011 3.9E-07 38.9 3.2 97 20-120 12-133 (158)
216 3bee_A Putative YFRE protein; 95.5 0.13 4.6E-06 30.3 7.8 64 75-139 5-71 (93)
217 1dce_A Protein (RAB geranylger 95.4 0.56 1.9E-05 37.3 13.2 118 53-172 40-174 (567)
218 3mkq_B Coatomer subunit alpha; 95.3 0.32 1.1E-05 32.5 10.0 126 21-168 16-141 (177)
219 4gns_B Protein CSD3, chitin bi 95.0 0.26 9.1E-06 40.5 10.4 127 43-169 246-398 (754)
220 1pc2_A Mitochondria fission pr 94.9 0.19 6.5E-06 32.8 7.6 80 57-138 14-98 (152)
221 2v5f_A Prolyl 4-hydroxylase su 94.5 0.22 7.4E-06 29.8 6.9 67 74-140 3-75 (104)
222 2v5f_A Prolyl 4-hydroxylase su 94.5 0.38 1.3E-05 28.7 8.1 25 144-168 48-72 (104)
223 2ff4_A Probable regulatory pro 94.4 0.2 7E-06 37.8 8.0 61 115-175 175-243 (388)
224 3dss_A Geranylgeranyl transfer 94.2 1.2 4.1E-05 32.9 12.3 148 21-170 40-221 (331)
225 1pc2_A Mitochondria fission pr 93.9 0.47 1.6E-05 30.9 8.0 78 92-170 14-99 (152)
226 2uwj_G Type III export protein 93.8 0.62 2.1E-05 28.1 8.5 79 90-172 20-98 (115)
227 2p58_C Putative type III secre 93.7 0.64 2.2E-05 28.1 9.0 79 90-172 21-99 (116)
228 4h7y_A Dual specificity protei 93.6 0.94 3.2E-05 29.6 10.2 112 38-151 10-137 (161)
229 3lvg_A Clathrin heavy chain 1; 92.9 0.021 7.3E-07 44.7 0.3 142 12-164 56-221 (624)
230 2ff4_A Probable regulatory pro 92.4 0.79 2.7E-05 34.5 8.4 67 46-113 176-247 (388)
231 3ly7_A Transcriptional activat 92.0 3 0.0001 31.3 15.6 130 39-170 192-338 (372)
232 3u64_A Protein TP_0956; tetrat 91.7 1.3 4.6E-05 32.1 8.4 79 93-173 180-271 (301)
233 3ly7_A Transcriptional activat 91.5 0.9 3.1E-05 34.1 7.6 72 73-146 274-347 (372)
234 4h7y_A Dual specificity protei 91.5 2 6.7E-05 28.1 8.8 98 77-175 14-127 (161)
235 1nzn_A CGI-135 protein, fissio 91.2 1.2 4.1E-05 28.0 6.9 81 56-138 16-101 (126)
236 1v54_E Cytochrome C oxidase po 90.9 1.7 5.8E-05 26.3 7.3 45 94-138 28-72 (109)
237 3u64_A Protein TP_0956; tetrat 90.8 1.7 5.9E-05 31.6 8.2 76 41-116 199-282 (301)
238 4fhn_B Nucleoporin NUP120; pro 90.4 3 0.0001 36.1 10.8 143 16-160 818-989 (1139)
239 3bee_A Putative YFRE protein; 89.2 2.2 7.4E-05 24.9 9.8 64 40-105 5-72 (93)
240 3ltm_A Alpha-REP4; protein eng 89.0 3.7 0.00013 27.4 14.4 143 18-169 41-183 (211)
241 2zu6_B Programmed cell death p 88.8 5.4 0.00018 29.1 9.9 61 113-173 168-233 (307)
242 2nsz_A Programmed cell death p 88.8 0.91 3.1E-05 28.6 4.9 61 16-76 13-78 (129)
243 3ygs_P Procaspase 9; apoptosis 88.1 1.2 4.2E-05 26.5 5.0 37 24-60 51-87 (97)
244 2y69_E Cytochrome C oxidase su 88.1 3.7 0.00013 26.3 7.3 57 94-150 71-130 (152)
245 3ltj_A Alpharep-4; protein eng 87.8 4.3 0.00015 26.8 14.4 146 16-170 34-179 (201)
246 4b4t_R RPN7, 26S proteasome re 87.3 2.9 9.8E-05 31.9 7.8 94 43-138 133-235 (429)
247 2nsz_A Programmed cell death p 86.2 4.5 0.00015 25.3 7.3 74 79-153 10-85 (129)
248 2ion_A PDCD4, programmed cell 84.4 1.1 3.7E-05 29.2 3.6 61 16-76 15-80 (152)
249 1wy6_A Hypothetical protein ST 84.0 6.6 0.00023 25.4 11.6 64 110-173 90-156 (172)
250 3mkq_B Coatomer subunit alpha; 83.9 7.5 0.00025 25.9 13.6 101 50-167 14-114 (177)
251 2ion_A PDCD4, programmed cell 82.9 4.2 0.00014 26.3 6.0 77 78-155 11-89 (152)
252 1ug3_A EIF4GI, eukaryotic prot 82.4 7.4 0.00025 28.7 7.9 90 16-105 17-114 (339)
253 1wy6_A Hypothetical protein ST 82.1 8 0.00027 25.0 8.5 61 75-136 90-150 (172)
254 2p1h_A APAF-1, apoptotic prote 81.6 2.4 8.3E-05 24.8 4.2 35 22-56 48-82 (94)
255 3ffl_A Anaphase-promoting comp 81.4 4.8 0.00017 26.5 5.8 60 44-103 23-90 (167)
256 3hra_A Ankyrin repeat family p 81.4 6.9 0.00024 25.5 7.0 146 17-173 9-169 (201)
257 3txn_A 26S proteasome regulato 80.7 16 0.00054 27.7 9.2 92 46-137 104-207 (394)
258 1wdy_A 2-5A-dependent ribonucl 80.6 11 0.00039 25.8 8.7 146 16-172 42-209 (285)
259 3ltm_A Alpha-REP4; protein eng 80.5 10 0.00035 25.1 14.4 138 23-169 15-152 (211)
260 3kea_A K1L; tropism, ANK repea 80.2 11 0.00039 26.5 8.1 140 16-165 34-181 (285)
261 2fe3_A Peroxide operon regulat 80.1 9.1 0.00031 24.3 7.1 60 67-127 13-72 (145)
262 2d2s_A Exocyst complex compone 79.8 7.3 0.00025 27.2 6.7 90 46-138 23-118 (235)
263 3lvg_A Clathrin heavy chain 1; 78.0 0.036 1.2E-06 43.4 -5.9 117 40-167 53-169 (624)
264 1bd8_A P19INK4D CDK4/6 inhibit 77.0 4.2 0.00014 25.4 4.5 137 17-166 6-154 (156)
265 2uwj_G Type III export protein 76.8 4.5 0.00015 24.4 4.1 84 24-114 20-105 (115)
266 4ets_A Ferric uptake regulatio 76.5 13 0.00043 24.2 6.8 72 57-129 13-87 (162)
267 1v54_E Cytochrome C oxidase po 75.8 11 0.00037 22.8 8.8 61 59-120 28-88 (109)
268 3crd_A Raidd; caspase recruitm 75.8 7.5 0.00026 23.0 5.1 64 5-71 30-93 (100)
269 3ljn_A Hypothetical protein; a 75.5 6.5 0.00022 28.6 5.8 14 122-135 181-194 (364)
270 2wpv_A GET4, UPF0363 protein Y 75.0 22 0.00074 26.0 14.8 118 18-135 21-158 (312)
271 2zu6_B Programmed cell death p 74.4 4.5 0.00015 29.5 4.5 61 16-76 172-237 (307)
272 3ygs_P Procaspase 9; apoptosis 73.4 8.5 0.00029 22.7 4.9 66 97-164 25-90 (97)
273 3eu9_A Huntingtin-interacting 72.1 11 0.00038 25.1 6.0 22 16-37 45-66 (240)
274 4fhn_B Nucleoporin NUP120; pro 71.2 51 0.0017 28.6 13.8 151 16-168 848-1047(1139)
275 3eiq_C Programmed cell death p 70.7 5.9 0.0002 29.6 4.5 24 16-39 223-246 (358)
276 2xig_A Ferric uptake regulatio 70.4 18 0.00062 23.1 6.9 61 67-128 18-78 (150)
277 3o48_A Mitochondria fission 1 69.9 18 0.00062 22.9 7.9 68 71-138 35-105 (134)
278 1nzn_A CGI-135 protein, fissio 69.3 18 0.00061 22.6 8.7 78 92-170 17-102 (126)
279 1k1a_A B-cell lymphoma 3-encod 68.8 15 0.00053 24.5 6.2 143 16-165 12-170 (241)
280 2fu4_A Ferric uptake regulatio 68.2 13 0.00046 20.7 7.2 62 66-128 7-69 (83)
281 3eyy_A Putative iron uptake re 68.1 18 0.00061 22.9 5.9 59 67-127 10-68 (145)
282 4b4t_R RPN7, 26S proteasome re 68.0 37 0.0013 25.7 9.6 92 78-169 133-235 (429)
283 2o03_A Probable zinc uptake re 67.9 15 0.00052 22.7 5.4 46 45-90 14-59 (131)
284 3bge_A Predicted ATPase; struc 67.8 26 0.00088 23.8 6.8 62 46-107 9-78 (201)
285 2y69_E Cytochrome C oxidase su 67.7 21 0.00073 22.8 8.8 76 44-120 54-131 (152)
286 3mwm_A ZUR, putative metal upt 67.6 12 0.00043 23.5 5.0 45 46-90 18-62 (139)
287 1wdy_A 2-5A-dependent ribonucl 67.5 27 0.00091 23.9 9.0 49 87-135 190-240 (285)
288 2p1h_A APAF-1, apoptotic prote 67.2 16 0.00054 21.2 6.9 63 95-161 24-86 (94)
289 2r9g_A AAA ATPase, central reg 66.2 28 0.00096 23.7 8.0 61 46-107 16-84 (204)
290 1s6c_A KV4 potassium channel-i 64.3 25 0.00086 22.4 9.4 144 25-168 19-182 (183)
291 3aji_A 26S proteasome non-ATPa 64.3 22 0.00075 23.6 6.2 19 17-35 10-28 (231)
292 4hbd_A KN motif and ankyrin re 63.9 34 0.0012 23.8 7.4 146 16-168 114-273 (276)
293 2b7e_A PRE-mRNA processing pro 63.8 8.1 0.00028 20.7 2.9 46 57-102 2-55 (59)
294 4ets_A Ferric uptake regulatio 63.8 27 0.00092 22.6 7.5 58 38-95 29-88 (162)
295 1k1a_A B-cell lymphoma 3-encod 63.4 18 0.00062 24.2 5.6 143 16-165 49-203 (241)
296 3b7b_A Euchromatic histone-lys 62.5 17 0.00058 24.3 5.3 21 16-36 47-67 (237)
297 2w57_A Ferric uptake regulatio 62.2 27 0.00092 22.2 5.9 61 67-128 8-69 (150)
298 3eiq_C Programmed cell death p 62.0 27 0.00094 26.0 6.6 61 113-173 219-284 (358)
299 1zbp_A Hypothetical protein VP 61.7 30 0.001 24.7 6.4 116 48-170 4-128 (273)
300 3lpz_A GET4 (YOR164C homolog); 60.5 48 0.0017 24.5 15.8 116 20-135 22-160 (336)
301 3v30_A DNA-binding protein rfx 60.4 29 0.00098 21.8 7.5 142 17-168 6-158 (172)
302 3mwm_A ZUR, putative metal upt 60.2 20 0.00067 22.6 4.9 61 68-129 6-66 (139)
303 2f8y_A Notch homolog 1, transl 60.0 34 0.0012 22.5 6.6 22 16-37 28-49 (223)
304 1mzb_A Ferric uptake regulatio 59.4 29 0.00099 21.6 6.4 62 67-129 9-71 (136)
305 3ctd_A Putative ATPase, AAA fa 58.8 41 0.0014 23.1 7.2 65 43-107 34-106 (213)
306 3ffl_A Anaphase-promoting comp 58.7 36 0.0012 22.4 8.7 111 16-139 26-150 (167)
307 2etb_A Transient receptor pote 58.4 39 0.0013 22.9 6.7 118 47-166 5-157 (256)
308 3kea_A K1L; tropism, ANK repea 58.0 45 0.0015 23.3 8.4 112 16-136 65-183 (285)
309 3l6a_A Eukaryotic translation 56.9 18 0.00063 27.0 4.9 62 15-76 17-83 (364)
310 1wgl_A TOLL-interacting protei 56.6 21 0.00071 19.0 3.9 19 155-173 36-54 (59)
311 3ltj_A Alpharep-4; protein eng 56.4 38 0.0013 22.0 15.2 138 22-168 9-146 (201)
312 2o03_A Probable zinc uptake re 55.6 33 0.0011 21.2 5.4 49 81-129 15-63 (131)
313 3eu9_A Huntingtin-interacting 55.4 42 0.0014 22.1 6.6 111 16-136 12-131 (240)
314 3txn_A 26S proteasome regulato 55.0 66 0.0023 24.3 11.8 152 16-168 25-207 (394)
315 1mzb_A Ferric uptake regulatio 54.3 36 0.0012 21.1 7.6 62 32-93 8-70 (136)
316 1zbp_A Hypothetical protein VP 54.3 55 0.0019 23.4 6.7 109 19-137 6-126 (273)
317 1y8m_A FIS1; mitochondria, unk 53.8 41 0.0014 21.5 9.2 66 73-138 36-104 (144)
318 2rfa_A Transient receptor pote 53.5 46 0.0016 22.0 9.7 149 17-172 7-181 (232)
319 3jxi_A Vanilloid receptor-rela 53.4 49 0.0017 22.4 8.1 117 48-166 9-161 (260)
320 3jxi_A Vanilloid receptor-rela 53.3 28 0.00095 23.7 5.2 133 16-153 8-185 (260)
321 2ko4_A Mediator of RNA polymer 52.0 26 0.00088 19.9 3.8 32 71-102 31-62 (81)
322 3eyy_A Putative iron uptake re 51.7 43 0.0015 21.1 6.1 63 29-92 6-68 (145)
323 1jog_A Hypothetical protein HI 51.3 45 0.0015 21.2 6.1 63 42-107 41-108 (146)
324 2jul_A Calsenilin; EF-hand, ca 51.0 57 0.0019 22.4 9.8 129 40-168 107-255 (256)
325 4b4t_P 26S proteasome regulato 50.7 74 0.0025 24.3 7.6 90 80-169 141-245 (445)
326 4b4t_P 26S proteasome regulato 50.5 82 0.0028 24.0 11.2 94 45-138 141-245 (445)
327 3ljn_A Hypothetical protein; a 50.4 68 0.0023 23.1 7.5 144 16-166 23-194 (364)
328 2wpv_A GET4, UPF0363 protein Y 50.3 71 0.0024 23.3 11.4 25 42-66 34-58 (312)
329 2fe3_A Peroxide operon regulat 49.9 45 0.0016 20.9 7.9 68 26-93 6-73 (145)
330 1te4_A Conserved protein MTH18 49.3 41 0.0014 20.3 6.9 64 74-141 54-117 (131)
331 2qq8_A TBC1 domain family memb 48.9 50 0.0017 24.1 6.2 38 69-106 221-258 (334)
332 3twr_A Tankyrase-2; ankyrin re 48.8 46 0.0016 20.7 5.6 113 16-137 11-131 (165)
333 3hra_A Ankyrin repeat family p 47.7 46 0.0016 21.4 5.5 137 16-163 42-196 (201)
334 2w57_A Ferric uptake regulatio 46.9 53 0.0018 20.8 7.4 57 38-94 13-70 (150)
335 1y8m_A FIS1; mitochondria, unk 46.5 46 0.0016 21.3 4.8 85 24-110 20-109 (144)
336 1ug3_A EIF4GI, eukaryotic prot 45.7 28 0.00095 25.6 4.4 92 78-170 13-113 (339)
337 2yru_A Steroid receptor RNA ac 44.9 22 0.00075 21.9 3.1 41 64-104 49-89 (118)
338 3aji_A 26S proteasome non-ATPa 44.1 54 0.0019 21.6 5.5 66 98-164 88-158 (231)
339 3f3f_C Nucleoporin NUP85; stru 43.5 55 0.0019 26.1 5.8 67 93-161 498-568 (570)
340 3t8k_A Uncharacterized protein 43.0 63 0.0022 21.0 5.5 107 19-126 12-127 (186)
341 3esl_A Checkpoint serine/threo 42.0 79 0.0027 21.5 8.1 63 78-141 82-145 (202)
342 2qfz_A TBC1 domain family memb 41.8 62 0.0021 23.6 5.7 43 96-138 229-271 (345)
343 2p58_C Putative type III secre 41.7 57 0.0019 19.7 8.6 77 56-140 22-98 (116)
344 3l6a_A Eukaryotic translation 41.3 78 0.0027 23.6 6.2 24 79-102 15-38 (364)
345 3qye_A TBC1 domain family memb 40.9 1E+02 0.0034 22.3 11.0 94 63-156 210-308 (331)
346 2pnn_A Transient receptor pote 40.6 85 0.0029 21.4 7.2 96 41-138 11-125 (273)
347 1ihb_A P18-INK4C(INK6), cyclin 39.9 45 0.0015 20.5 4.3 137 14-162 6-154 (162)
348 2rfa_A Transient receptor pote 39.6 62 0.0021 21.4 5.2 21 16-36 40-60 (232)
349 3v31_A Ankyrin repeat family A 39.4 67 0.0023 19.9 7.3 142 17-169 7-159 (167)
350 2rg8_A Programmed cell death p 37.7 27 0.00091 22.8 2.9 24 16-39 16-39 (165)
351 4gq2_M Nucleoporin NUP120; bet 37.7 1.9E+02 0.0065 24.6 9.0 127 16-156 816-950 (950)
352 1oy3_D Transcription factor in 37.5 95 0.0032 21.0 6.8 73 83-160 162-240 (282)
353 4gpm_A Engineered protein OR26 37.0 81 0.0028 20.1 7.3 129 20-160 11-151 (169)
354 2dod_A Transcription elongatio 36.5 45 0.0015 19.0 3.3 35 57-91 16-50 (82)
355 2pnn_A Transient receptor pote 36.0 70 0.0024 21.8 5.1 132 16-152 16-192 (273)
356 1oyz_A Hypothetical protein YI 35.8 1.1E+02 0.0036 21.1 12.1 19 139-157 203-221 (280)
357 3hzj_A Rabgap1L, RAB GTPase-ac 35.2 1.2E+02 0.0041 21.6 7.4 40 98-137 176-215 (310)
358 1yyh_A HN1;, notch 1, ankyrin 34.9 68 0.0023 21.7 4.9 111 16-136 60-179 (253)
359 1uzc_A Hypothetical protein FL 34.9 52 0.0018 18.1 3.4 35 56-90 13-47 (71)
360 2xai_A ASB-9, ankyrin repeat a 34.7 1.1E+02 0.0036 20.8 6.5 111 17-136 40-156 (261)
361 1ixm_A SPO0B, protein (sporula 34.6 42 0.0014 22.4 3.5 21 116-136 37-57 (192)
362 4g8k_A 2-5A-dependent ribonucl 33.9 1.2E+02 0.0042 21.4 6.9 136 17-160 172-316 (337)
363 2xai_A ASB-9, ankyrin repeat a 33.4 1.1E+02 0.0038 20.7 7.6 111 17-137 7-124 (261)
364 2ve8_A FTSK, DNA translocase F 33.0 66 0.0023 17.9 5.7 43 126-173 11-53 (73)
365 3lpz_A GET4 (YOR164C homolog); 32.9 1.5E+02 0.005 21.9 11.7 24 43-66 37-60 (336)
366 3b7b_A Euchromatic histone-lys 32.2 1.1E+02 0.0037 20.1 6.2 20 16-35 14-33 (237)
367 2xig_A Ferric uptake regulatio 32.1 96 0.0033 19.5 7.7 55 39-93 24-78 (150)
368 2etb_A Transient receptor pote 31.8 35 0.0012 23.2 2.9 83 82-166 5-111 (256)
369 4b4t_S RPN3, 26S proteasome re 31.7 1.9E+02 0.0065 22.8 9.9 117 41-165 231-364 (523)
370 2f8y_A Notch homolog 1, transl 31.3 1.1E+02 0.0037 19.9 8.3 135 16-160 61-206 (223)
371 2y1l_E Darpin-8.4; hydrolase-i 31.0 97 0.0033 19.2 6.5 135 16-161 17-162 (169)
372 3esl_A Checkpoint serine/threo 30.9 1.3E+02 0.0043 20.5 8.5 68 44-112 83-151 (202)
373 3bu8_A Telomeric repeat-bindin 30.7 1.3E+02 0.0046 20.8 9.2 48 92-139 88-142 (235)
374 1fkm_A Protein (GYP1P), ORF YO 30.1 1.7E+02 0.0057 22.0 6.5 39 98-136 218-256 (396)
375 2bn5_A PSI; nuclear protein, s 29.5 48 0.0016 15.2 2.8 20 118-137 9-28 (33)
376 4b4t_S RPN3, 26S proteasome re 29.0 2.1E+02 0.0072 22.6 6.9 59 111-169 231-297 (523)
377 2i7a_A Calpain 13; calcium-dep 28.9 1E+02 0.0036 19.7 4.7 41 25-65 44-86 (174)
378 3kat_A Nacht, LRR and PYD doma 28.4 91 0.0031 18.7 3.9 30 24-53 61-90 (107)
379 1pbw_A Rhogap domain, phosphat 28.3 82 0.0028 21.3 4.2 69 56-124 75-147 (216)
380 2rfm_A Putative ankyrin repeat 28.3 1.2E+02 0.004 19.3 5.6 137 16-163 38-185 (192)
381 3t5v_B Nuclear mRNA export pro 28.2 2.1E+02 0.0071 22.1 8.7 122 44-167 179-320 (455)
382 4b93_B Ankyrin repeat domain-c 27.5 1.5E+02 0.005 20.5 5.6 17 120-136 191-207 (269)
383 1z5h_A Tricorn protease intera 26.9 2.3E+02 0.0078 23.5 7.3 31 74-104 647-677 (780)
384 2fu4_A Ferric uptake regulatio 26.9 84 0.0029 17.2 5.6 51 41-91 16-67 (83)
385 1uhw_A Pleckstrin; three-helix 26.6 1.1E+02 0.0037 18.5 4.0 49 59-107 7-71 (109)
386 3f3f_C Nucleoporin NUP85; stru 26.6 86 0.0029 25.1 4.4 88 40-130 478-568 (570)
387 1oai_A Nuclear RNA export fact 26.6 52 0.0018 17.4 2.3 22 55-76 34-56 (59)
388 1wty_A Hypothetical protein TT 26.2 1.1E+02 0.0038 18.4 5.8 59 40-103 20-79 (119)
389 1n11_A Ankyrin; clathrin, BAND 25.8 1.1E+02 0.0036 22.7 4.8 22 16-37 17-38 (437)
390 3cqc_A Nuclear pore complex pr 25.8 42 0.0014 23.9 2.4 27 114-140 37-63 (270)
391 3cqc_A Nuclear pore complex pr 25.4 62 0.0021 23.0 3.2 24 78-101 36-59 (270)
392 2yru_A Steroid receptor RNA ac 25.4 1.2E+02 0.0041 18.5 5.5 63 78-140 21-90 (118)
393 3pvs_A Replication-associated 25.0 2.3E+02 0.0079 21.6 6.7 61 47-107 258-326 (447)
394 3us6_A Histidine-containing ph 25.0 1.4E+02 0.0047 19.0 9.2 24 44-67 10-33 (153)
395 2lwd_A Probable ATP-dependent 24.6 39 0.0013 20.1 1.8 41 16-56 49-90 (100)
396 3d9h_A CDNA FLJ77766, highly s 24.6 1.8E+02 0.006 20.1 5.9 21 16-36 62-82 (285)
397 3m0z_A Putative aldolase; MCSG 24.2 1.1E+02 0.0037 21.4 4.1 79 26-104 147-246 (249)
398 3qil_A Clathrin heavy chain 1; 23.7 1.1E+02 0.0039 18.9 3.7 53 43-98 34-86 (125)
399 2rg8_A Programmed cell death p 23.7 1E+02 0.0035 20.0 3.8 25 44-68 13-37 (165)
400 1v3f_A Pleckstrin 2; three-hel 22.7 1.4E+02 0.0047 18.2 5.1 49 59-107 7-71 (120)
401 1n0r_A 4ANK, 4 ankyrin repeats 22.6 1.2E+02 0.004 17.3 5.3 14 22-35 11-24 (126)
402 2chq_A Replication factor C sm 22.5 2E+02 0.0068 20.0 10.3 18 156-173 241-259 (319)
403 3utm_A Tankyrase-1; tankyrase, 22.4 2E+02 0.0069 20.0 5.7 111 17-137 28-147 (351)
404 3f6q_A Integrin-linked protein 21.4 1.6E+02 0.0054 18.4 6.5 112 17-137 9-128 (179)
405 3lxu_X Tripeptidyl-peptidase 2 21.3 4.5E+02 0.016 23.7 8.2 80 44-126 1237-1332(1354)
406 1te4_A Conserved protein MTH18 21.3 1.4E+02 0.0048 17.8 7.9 78 16-98 32-109 (131)
407 1wwp_A Hypothetical protein TT 20.3 1.5E+02 0.0052 17.8 4.6 51 41-95 20-72 (119)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.4e-36 Score=236.60 Aligned_cols=161 Identities=13% Similarity=0.043 Sum_probs=154.5
Q ss_pred hhhhhhcCCCChhHHHHHhhhcc----CCCchhHHHHHHHHHhCCC---------cchHHHHHHHHHhcCCCCCHhhHHH
Q 045063 15 CISIADALPKRYVYTHQVFDEIS----HGDLSSLNSQLFSYTRSRN---------FPATWALFCYMHSTCLNLTAYTFTP 81 (175)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~---------~~~a~~l~~~m~~~~~~~~~~t~~~ 81 (175)
.+|++|++.|++++|.++|++|. .||..+||+||.+|++.+. ++.|.++|++|.+.|+.||..||++
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~ 110 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN 110 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 38999999999999999999997 4899999999999998765 5779999999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHHhcCC
Q 045063 82 VLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFLRHGL 157 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~g~ 157 (175)
++++|++.|++++|.++|++|.+.|+.||..+||++|.+|++.|++++|.++|++|. .||..||++||.+|++.|+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~ 190 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN 190 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999999999999999997 6799999999999999999
Q ss_pred hHHHHHHHHHHHhcccCC
Q 045063 158 AKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p 175 (175)
+++|.++|++|.+.|+.|
T Consensus 191 ~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 191 ADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHHHHHHHHHHHHTSSB
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 999999999999999887
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=8.4e-31 Score=205.27 Aligned_cols=149 Identities=16% Similarity=0.154 Sum_probs=129.4
Q ss_pred hHHHHHhhhccCC-----CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC---------c
Q 045063 27 VYTHQVFDEISHG-----DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA---------P 92 (175)
Q Consensus 27 ~~a~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~---------~ 92 (175)
..+..+++++.+. +...++.+|.+|++.|++++|+++|++|++.|++||..|||+||++|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4455666666542 3456899999999999999999999999999999999999999999998765 5
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+.|.++|++|.+.|+.||..+||++|++|++.|++++|.++|++|. .||..|||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999997 579999999999999999999999999999
Q ss_pred HhcccCC
Q 045063 169 TRERVEF 175 (175)
Q Consensus 169 ~~~g~~p 175 (175)
.+.|+.|
T Consensus 167 ~~~G~~P 173 (501)
T 4g26_A 167 VESEVVP 173 (501)
T ss_dssp HHTTCCC
T ss_pred HhcCCCC
Confidence 9999988
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=4.5e-25 Score=180.61 Aligned_cols=144 Identities=11% Similarity=0.112 Sum_probs=122.8
Q ss_pred cchhhhhhcCCCChhHHHHHhhhcc-------CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 045063 13 KTCISIADALPKRYVYTHQVFDEIS-------HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA 85 (175)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~ 85 (175)
+|+||++||+.|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||.+|||++|++
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g 209 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 5669999999999999999998764 479999999999999999999999999999999999999999999999
Q ss_pred HhcCCCc-hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-----CchhHHHHHHHHHhcC
Q 045063 86 CSALPAP-ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-----DVVTWNALLSSFLRHG 156 (175)
Q Consensus 86 ~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~li~~~~~~g 156 (175)
+++.|.. ++|.+++++|.+.|+.||..+|+++++++.+.+-++.+.++...+..+ -+.+.+.|.+-|.+.+
T Consensus 210 lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999875 788999999999999999999999999988887777777766555422 2445556666666555
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=4.8e-24 Score=174.62 Aligned_cols=116 Identities=14% Similarity=0.057 Sum_probs=107.8
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHH---hcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMH---STCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTAL 117 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~---~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 117 (175)
..+||+||++||+.|++++|.++|.+|. ..|+.||.+|||+||+++|+.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4479999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHhcc----CCCchhHHHHHHHHHhcC
Q 045063 118 MDMYSKYGLL-GESVEAFKEIE----FKDVVTWNALLSSFLRHG 156 (175)
Q Consensus 118 i~~~~~~g~~-~~a~~~~~~m~----~~~~~~~~~li~~~~~~g 156 (175)
|+++++.|+. ++|.++|++|. .||.++|+.+|+++.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 9999999985 78999999998 689999999998776654
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.72 E-value=7.7e-17 Score=127.59 Aligned_cols=152 Identities=10% Similarity=0.018 Sum_probs=79.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
++..|.+.|++++|.++|+++.+ ++..+|+.++..|.+.|++++|.++|+++.+.+. .+..+++.+..++.+.|+.+
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHH
Confidence 46666666777777777766655 5666667777777777777777777776655432 13334444444444444444
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--C-CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--F-KDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+|..+++++.+.. +.+..+|+.+..+|.+.|++++|.++|+.+. . .+..+|+.++.+|.+.|++++|.++|+++.
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444321 2234444444444444444444444444432 1 133344444444444444444444444443
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.71 E-value=2.9e-16 Score=124.30 Aligned_cols=153 Identities=8% Similarity=-0.011 Sum_probs=81.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+..+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|++|.+.+ +.+..+|+.+..+|.+.|++
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCH
Confidence 55566666666666666665432 244455556666666666666666665554432 22444555555555555555
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--------CCC--chhHHHHHHHHHhcCChHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--------FKD--VVTWNALLSSFLRHGLAKEAF 162 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~~--~~~~~~li~~~~~~g~~~~a~ 162 (175)
++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+.+. .|+ ..+|+.+..+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 55555555555432 2244455555555555555555555555542 122 345555555555555555555
Q ss_pred HHHHHHHh
Q 045063 163 GVFQAMTR 170 (175)
Q Consensus 163 ~~~~~m~~ 170 (175)
+.|+++.+
T Consensus 537 ~~~~~~~~ 544 (597)
T 2xpi_A 537 DALNQGLL 544 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 7
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.43 E-value=1.6e-11 Score=89.78 Aligned_cols=163 Identities=7% Similarity=-0.077 Sum_probs=127.6
Q ss_pred hHHhhcCCCcch-----hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh
Q 045063 4 FIRMTNFPAKTC-----ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT 78 (175)
Q Consensus 4 ~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t 78 (175)
+++..+..|.+. +-.++...|++++|.+.|++ ..+...+..+...|.+.|++++|.+.|+++.+.. |+...
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~ 165 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATL 165 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHH
Confidence 344445556554 44778899999999999998 4577788999999999999999999999997764 44321
Q ss_pred H---HHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHH
Q 045063 79 F---TPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSF 152 (175)
Q Consensus 79 ~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~ 152 (175)
. ...+..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|.+.|++.. .| |..+|..++..+
T Consensus 166 ~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 166 TQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 22334455668999999999999986 45678899999999999999999999999876 34 677899999999
Q ss_pred HhcCChHH-HHHHHHHHHhc
Q 045063 153 LRHGLAKE-AFGVFQAMTRE 171 (175)
Q Consensus 153 ~~~g~~~~-a~~~~~~m~~~ 171 (175)
...|+.++ +.++++++.+.
T Consensus 245 ~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 245 QHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHh
Confidence 99999875 56788877653
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=1.3e-11 Score=92.85 Aligned_cols=153 Identities=8% Similarity=0.008 Sum_probs=109.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-..+...|++++|...|++... | +..+|..+..+|.+.|++++|.+.|+++.+.. +-+..+|..+..++.+.|++
T Consensus 209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33444455555555555554421 2 45667777788888888888888888876642 12345777788888888888
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++|...++++.+.. +.+..+|..+...|.+.|++++|.+.++.+.+ | +..+|..+...|.+.|++++|...|+++.
T Consensus 288 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 288 AEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888887653 45667888888888888888888888888763 3 45678888888888888888888888876
Q ss_pred h
Q 045063 170 R 170 (175)
Q Consensus 170 ~ 170 (175)
+
T Consensus 367 ~ 367 (388)
T 1w3b_A 367 R 367 (388)
T ss_dssp T
T ss_pred h
Confidence 5
No 9
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=5.6e-11 Score=82.26 Aligned_cols=153 Identities=10% Similarity=-0.067 Sum_probs=74.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC-CC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL-PA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~-~~ 91 (175)
+...+...|+++.|.+.|++..+ .+...|..+..+|...|++++|.+.|.+..+.. +.+..++..+...+... |+
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCc
Confidence 34444555555555555554432 234445555555555555555555555554431 12333455555555555 55
Q ss_pred chhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
+++|...++...+.+..| +...+..+...|.+.|++++|...++... .| +...|..+...+.+.|++++|...+++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555554421112 23445555555555555555555555443 12 344455555555555555555555555
Q ss_pred HH
Q 045063 168 MT 169 (175)
Q Consensus 168 m~ 169 (175)
..
T Consensus 173 ~~ 174 (225)
T 2vq2_A 173 YQ 174 (225)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.37 E-value=5.7e-11 Score=84.06 Aligned_cols=155 Identities=8% Similarity=-0.004 Sum_probs=106.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~ 91 (175)
+..++...|++++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+.+..|+ ...+..+..++.+.|+
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 156 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK 156 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC
Confidence 55666777777777777776542 2556677777777777777777777777766334443 3466667777777777
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+++|...+++..+.. +.+...+..+...|...|++++|...++...+ .+...|..+...+.+.|+.++|.+.++++
T Consensus 157 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 157 PAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777776643 23456777777777777777777777777653 24556677777777778888887777777
Q ss_pred Hhc
Q 045063 169 TRE 171 (175)
Q Consensus 169 ~~~ 171 (175)
.+.
T Consensus 236 ~~~ 238 (252)
T 2ho1_A 236 KRL 238 (252)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 11
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=6.6e-11 Score=79.32 Aligned_cols=153 Identities=13% Similarity=0.069 Sum_probs=132.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+...+...|+++.|...|+++.+ .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+...|++
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence 56677888999999999999864 367778999999999999999999999987762 34566888888999999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++|...+++..+.. +.+...+..+...|.+.|++++|.+.++...+ .+...|..+...+...|+.++|...+++..
T Consensus 93 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 93 DLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999998763 45677899999999999999999999998762 356789999999999999999999999876
Q ss_pred h
Q 045063 170 R 170 (175)
Q Consensus 170 ~ 170 (175)
+
T Consensus 172 ~ 172 (186)
T 3as5_A 172 E 172 (186)
T ss_dssp H
T ss_pred H
Confidence 5
No 12
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.36 E-value=4.3e-11 Score=90.04 Aligned_cols=154 Identities=9% Similarity=-0.036 Sum_probs=86.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcC---------------------
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTC--------------------- 71 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--------------------- 71 (175)
+-..+...|++++|.+.|+++.+ | +..+|+.+..++.+.|++++|.+.|+++.+..
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 220 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 44555566666666666666532 2 34455666666666666666666665554321
Q ss_pred -----------CCC-CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc-
Q 045063 72 -----------LNL-TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE- 138 (175)
Q Consensus 72 -----------~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~- 138 (175)
+.| +..++..+..++.+.|++++|...++++.+.. +.+..+|..+...|.+.|++++|.+.|+.+.
T Consensus 221 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 112 23455555555666666666666666655532 1234456666666666666666666666554
Q ss_pred --CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 139 --FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 139 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+..+|+.+...+.+.|++++|...++++.+
T Consensus 300 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 300 LCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22455666666666666666666666666544
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.35 E-value=3.4e-11 Score=91.97 Aligned_cols=152 Identities=4% Similarity=-0.051 Sum_probs=86.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH----hhHHHHH-----
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA----YTFTPVL----- 83 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~----~t~~~ll----- 83 (175)
+..++.+.|+++.|...|+++.+ .+...|..+..+|.+.|++++|.+.|+++.+. .|+. ..+..+.
T Consensus 66 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 66 RATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH
Confidence 44455555555555555555432 23445555555555555555665555555443 1221 2333332
Q ss_pred -------HHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHH
Q 045063 84 -------GACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFL 153 (175)
Q Consensus 84 -------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~ 153 (175)
..+.+.|++++|...++.+.+.. +.+...+..+..+|.+.|++++|.+.|+.+. ..+..+|..+...|.
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 22455556666666666555432 2345566666667777777777777776654 235666777777777
Q ss_pred hcCChHHHHHHHHHHHh
Q 045063 154 RHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 154 ~~g~~~~a~~~~~~m~~ 170 (175)
+.|++++|...|+++.+
T Consensus 223 ~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLK 239 (450)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777777654
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.34 E-value=3e-11 Score=92.30 Aligned_cols=151 Identities=9% Similarity=-0.035 Sum_probs=124.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHH---------
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPV--------- 82 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~l--------- 82 (175)
+..+|.+.|+++.|...|+++.+ .+..+|..+..+|.+.|++++|...|.++.+. .|+.. .+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHH
Confidence 77888899999999999998753 46788999999999999999999999998754 34333 34333
Q ss_pred ---HHHHhcCCCchhHHHHHHHHHHhCCCcc-----hHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHH
Q 045063 83 ---LGACSALPAPERGKQVHALMIKGGTDSE-----PVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSS 151 (175)
Q Consensus 83 ---l~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~ 151 (175)
...+.+.|++++|...++.+.+.. |+ ...|..+...|.+.|++++|.+.++.+. .| +...|..+..+
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 678888999999999999998743 43 4478888999999999999999999875 34 67789999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 045063 152 FLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~ 170 (175)
|...|++++|...|++..+
T Consensus 339 ~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 9999999999999998865
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.34 E-value=5.7e-11 Score=84.04 Aligned_cols=155 Identities=6% Similarity=-0.107 Sum_probs=132.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+...+...|+++.|...|+++.+ .+...|..+..+|.+.|++++|.+.|.+..+.. +.+...+..+...+.+.|++
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHH
Confidence 66778899999999999998753 367788999999999999999999999987763 23567888899999999999
Q ss_pred hhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
++|...+++..+.+..| +...+..+...|.+.|++++|.+.++...+ | +...|..+...|.+.|+.++|...+++.
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999998733344 566889999999999999999999998762 3 5778999999999999999999999998
Q ss_pred Hhc
Q 045063 169 TRE 171 (175)
Q Consensus 169 ~~~ 171 (175)
.+.
T Consensus 202 ~~~ 204 (252)
T 2ho1_A 202 AQG 204 (252)
T ss_dssp HTT
T ss_pred HHh
Confidence 653
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.33 E-value=9.3e-11 Score=82.25 Aligned_cols=154 Identities=7% Similarity=0.016 Sum_probs=118.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+...+.+.|+++.|...|++..+ .+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+.+.|++
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 66677788888888888887643 356677888888888888888888888876653 23556777788888888888
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++|...+++..+.. +.+...+..+...|.+.|++++|...++...+ .+..+|..+...|.+.|+.++|...+++..
T Consensus 142 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 142 KLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888887653 34566788888888888888888888887652 256678888888888888888888888876
Q ss_pred hc
Q 045063 170 RE 171 (175)
Q Consensus 170 ~~ 171 (175)
+.
T Consensus 221 ~~ 222 (243)
T 2q7f_A 221 DI 222 (243)
T ss_dssp HH
T ss_pred cc
Confidence 53
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.30 E-value=2.9e-10 Score=78.61 Aligned_cols=155 Identities=10% Similarity=-0.102 Sum_probs=132.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhC-CCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRS-RNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~ 90 (175)
+..++...|+++.|.+.|++..+ .+...+..+...+... |++++|...|++..+.+..|+ ...+..+..++.+.|
T Consensus 48 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 127 (225)
T 2vq2_A 48 RAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcC
Confidence 77788999999999999998753 3677899999999999 999999999999988444454 458888899999999
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---C-CCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---F-KDVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~-~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
++++|...+++..+.. +.+...+..+...|.+.|++++|.+.++... . .+...|..+...+...|+.+.|..+++
T Consensus 128 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 128 QFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 9999999999998763 3457789999999999999999999999876 2 466678888888899999999999999
Q ss_pred HHHhc
Q 045063 167 AMTRE 171 (175)
Q Consensus 167 ~m~~~ 171 (175)
.+.+.
T Consensus 207 ~~~~~ 211 (225)
T 2vq2_A 207 QLQAN 211 (225)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88653
No 18
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=2.5e-10 Score=77.23 Aligned_cols=154 Identities=10% Similarity=0.028 Sum_probs=131.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+=..|.+.|+++.|.+.|++..+ | +...|..+..+|.+.|++++|...+....... +-+...+..+-..+...+++
T Consensus 11 lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 89 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEK 89 (184)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCH
Confidence 55677889999999999999753 3 67789999999999999999999999987653 23455777777888899999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+.+...+.+..+.. +.+...+..+-..|.+.|++++|.+.|+... .| +...|..+-.+|.+.|++++|.+.|++..
T Consensus 90 ~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 90 QAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999988753 3467789999999999999999999999876 34 66789999999999999999999999876
Q ss_pred hc
Q 045063 170 RE 171 (175)
Q Consensus 170 ~~ 171 (175)
+.
T Consensus 169 ~~ 170 (184)
T 3vtx_A 169 EK 170 (184)
T ss_dssp HT
T ss_pred hC
Confidence 53
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.29 E-value=3.1e-12 Score=97.99 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=30.4
Q ss_pred CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHh
Q 045063 75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLR 154 (175)
Q Consensus 75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~ 154 (175)
+..+|..+.+.|...|.+++|...|..+ ..|..+++++.+.|++++|.+.+... .++.+|..++.+|+.
T Consensus 121 n~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 121 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 189 (449)
T ss_dssp ----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHH
Confidence 3334444444444444444444444432 24455555555555555555555544 245555555555555
Q ss_pred cCChHHHH
Q 045063 155 HGLAKEAF 162 (175)
Q Consensus 155 ~g~~~~a~ 162 (175)
.|+++.|.
T Consensus 190 ~~ef~lA~ 197 (449)
T 1b89_A 190 GKEFRLAQ 197 (449)
T ss_dssp TTCHHHHH
T ss_pred cCcHHHHH
Confidence 55554443
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.27 E-value=1e-10 Score=85.55 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=102.2
Q ss_pred hhhhhcCCCChhHHHHHhhhcc----CC-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEIS----HG-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~----~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
+...+.+.++.+.|.+.++++. .| +...+..+-..+.+.|++++|++.|.+ +.+...+..+...+.+.|
T Consensus 71 la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g 144 (291)
T 3mkr_A 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLD 144 (291)
T ss_dssp HHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCC
Confidence 5566667777777777777653 14 344455555777777777777777776 345567777777888888
Q ss_pred CchhHHHHHHHHHHhCCCcchHH---HHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVV---KTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
++++|.+.++.+.+.. |+... ....+..+...|++++|..+|+++.+ | +...|+.+..++.+.|++++|...
T Consensus 145 ~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 222 (291)
T 3mkr_A 145 RLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV 222 (291)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888887653 44321 12233444455788888888888762 3 666788888888888888888888
Q ss_pred HHHHHhc
Q 045063 165 FQAMTRE 171 (175)
Q Consensus 165 ~~~m~~~ 171 (175)
|++..+.
T Consensus 223 l~~al~~ 229 (291)
T 3mkr_A 223 LQEALDK 229 (291)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887653
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.27 E-value=1.3e-10 Score=86.61 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=40.1
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 110 EPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+..++..+...|.+.|++++|.+.|+... .| +..+|+.+...|.+.|++++|...|++..+
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566667777777777777777776654 22 455666677777777777777777666554
No 22
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.26 E-value=1.6e-10 Score=81.08 Aligned_cols=154 Identities=10% Similarity=0.013 Sum_probs=122.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-..+...|+++.|...|++..+ .+...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+.+.|++
T Consensus 29 ~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp -------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccH
Confidence 66778899999999999999754 367788999999999999999999999987763 23567888899999999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++|...+++..+.. +.+...+..+...|.+.|++++|...++... ..+...|..+...+.+.|++++|...|++..
T Consensus 108 ~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 108 KEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999998764 3467789999999999999999999999876 2367789999999999999999999999886
Q ss_pred hc
Q 045063 170 RE 171 (175)
Q Consensus 170 ~~ 171 (175)
+.
T Consensus 187 ~~ 188 (243)
T 2q7f_A 187 EQ 188 (243)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 23
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.25 E-value=6.6e-10 Score=70.35 Aligned_cols=127 Identities=12% Similarity=0.090 Sum_probs=105.1
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 122 (175)
.|..+...+...|++++|.+.|.++.+.. +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 56778888889999999999999987653 2355678888888888999999999999988764 345678888899999
Q ss_pred hcCChHHHHHHHHhccC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 123 KYGLLGESVEAFKEIEF---KDVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 123 ~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
..|++++|.+.++.+.+ .+...|..+...+.+.|+.++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999988762 35677888999999999999999999988764
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.24 E-value=7e-11 Score=90.51 Aligned_cols=140 Identities=9% Similarity=-0.017 Sum_probs=95.4
Q ss_pred CCcchhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 11 PAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
...+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..+.+++.+.|
T Consensus 95 ~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 95 YVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 162 (449)
T ss_dssp --------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc
Confidence 345669999999999999998886 377789999999999999999999999987 48999999999999
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++++|.+.+... .++.+|..++.+|...|+++.|......+. .+..-...++..|.+.|++++|..+++.-.
T Consensus 163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999999987 378999999999999999999988777655 333334468999999999999999988764
No 25
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.24 E-value=1.2e-10 Score=81.46 Aligned_cols=150 Identities=13% Similarity=-0.013 Sum_probs=67.0
Q ss_pred hhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC-----
Q 045063 18 IADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL----- 89 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~----- 89 (175)
..+.+.|++++|...|++..+ | +...|..+-.++.+.|++++|...|++..+.. +-+...+..+-.++.+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhh
Confidence 334445555555555554332 1 33444444455555555555555555543331 11223444444444444
Q ss_pred ------CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CCchhHHHHHHHHHhcCChHHH
Q 045063 90 ------PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 90 ------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a 161 (175)
|++++|...+++..+.. +-+...|..+-..|...|++++|...|+...+ .+...|..+-..|...|++++|
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred hhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHH
Confidence 45555555554444421 11233444444444555555555444444321 2333444444444445555555
Q ss_pred HHHHHHHH
Q 045063 162 FGVFQAMT 169 (175)
Q Consensus 162 ~~~~~~m~ 169 (175)
...|++..
T Consensus 171 ~~~~~~al 178 (217)
T 2pl2_A 171 LAQYAKAL 178 (217)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.23 E-value=1.6e-10 Score=86.23 Aligned_cols=154 Identities=14% Similarity=0.001 Sum_probs=121.8
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcC---------------------
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTC--------------------- 71 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--------------------- 71 (175)
+-.++.+.|+++.|...|++..+ .+...|..+..+|.+.|++++|...|+++.+..
T Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~ 184 (365)
T 4eqf_A 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS 184 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHH
Confidence 66666777777777777776542 245667777777777777777777777664321
Q ss_pred ---------------------CCC---CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063 72 ---------------------LNL---TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL 127 (175)
Q Consensus 72 ---------------------~~~---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 127 (175)
..| +..++..+-..+.+.|++++|...+++..+.. +.+..+|..+..+|.+.|++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 012 56788889999999999999999999998763 34678999999999999999
Q ss_pred HHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 128 GESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 128 ~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
++|.+.|+... .| +...|..+...|.+.|++++|...|++..+
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999876 34 577899999999999999999999999865
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.21 E-value=1.1e-09 Score=81.34 Aligned_cols=154 Identities=9% Similarity=0.077 Sum_probs=84.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-..+.+.|+++.|...|+++.+ .+...|..+..++.+.|++++|.+.|.+..+.. +.+..++..+..++...|++
T Consensus 70 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 44555566666666666666532 244455556666666666666666666655442 22344555555555555555
Q ss_pred hhHHHHHHHHHHhCC-----------------------------------------------Cc---chHHHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGT-----------------------------------------------DS---EPVVKTALMDMYS 122 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~-----------------------------------------------~~---~~~~~~~li~~~~ 122 (175)
++|...++...+... .| +..++..+...|.
T Consensus 149 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~ 228 (368)
T 1fch_A 149 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN 228 (368)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH
Confidence 555555554443210 11 2445566666666
Q ss_pred hcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 123 KYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 123 ~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+.|++++|...++... .| +...|..+...|.+.|++++|...|++..+
T Consensus 229 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 279 (368)
T 1fch_A 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666554 22 344566666666666666666666665543
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.2e-09 Score=79.67 Aligned_cols=153 Identities=6% Similarity=-0.160 Sum_probs=87.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~ 91 (175)
+..++...|++++|...|+++.+ .+...|..+...+...| ++++|...|.+..+.. +.+...|..+..++...|+
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccC
Confidence 44445555555555555555432 24445555566666666 6666666666654432 1223355556666666666
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+++|...+++..+.. +.+...+..+...|...|++++|.+.++...+ | +...|..+...+.+.|++++|...+++.
T Consensus 141 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 141 HDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 666666666665542 22344555566666666666666666666542 2 4456666666667777777777766665
Q ss_pred Hh
Q 045063 169 TR 170 (175)
Q Consensus 169 ~~ 170 (175)
.+
T Consensus 220 ~~ 221 (330)
T 3hym_B 220 LE 221 (330)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 29
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.20 E-value=1.8e-09 Score=78.72 Aligned_cols=152 Identities=7% Similarity=-0.081 Sum_probs=79.1
Q ss_pred hhhhhcCCC-ChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063 16 ISIADALPK-RYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~-~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~ 91 (175)
+-..+...| +++.|...|++..+ .+...|..+..++.+.|++++|...|.+..+... .+...+..+-..+...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhh
Confidence 444555555 56666666665432 2344555555566666666666666665544321 122344445555555555
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC-----------C-CchhHHHHHHHHHhcCChH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF-----------K-DVVTWNALLSSFLRHGLAK 159 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----------~-~~~~~~~li~~~~~~g~~~ 159 (175)
+++|...+++..+.. +.+...+..+...|.+.|++++|...++...+ + +...|..+...|.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 555555555555432 22344555555555555555555555554431 1 2335555555555555555
Q ss_pred HHHHHHHHHH
Q 045063 160 EAFGVFQAMT 169 (175)
Q Consensus 160 ~a~~~~~~m~ 169 (175)
+|...|++..
T Consensus 254 ~A~~~~~~a~ 263 (330)
T 3hym_B 254 EALDYHRQAL 263 (330)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.20 E-value=1.4e-09 Score=80.85 Aligned_cols=154 Identities=9% Similarity=-0.003 Sum_probs=126.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC--------------------
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-------------------- 72 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-------------------- 72 (175)
+..++.+.|+++.|...|++..+ .+..++..+..+|.+.|++++|.+.|.++.+...
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 183 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccH
Confidence 66778888888888888887642 3666788888888888888888888877654321
Q ss_pred ---------------------------CC---CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063 73 ---------------------------NL---TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122 (175)
Q Consensus 73 ---------------------------~~---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 122 (175)
.| +..++..+...+.+.|++++|...+++..+.. +.+...|..+...|.
T Consensus 184 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 184 SKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLA 262 (368)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence 12 45688888999999999999999999998763 345779999999999
Q ss_pred hcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 123 KYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 123 ~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+.|++++|...|+... .| +...|..+...|.+.|++++|...|++..+
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999876 33 567899999999999999999999998765
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.1e-09 Score=77.29 Aligned_cols=154 Identities=10% Similarity=-0.044 Sum_probs=119.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-C-------chhHHHHHHHHHhCCCcchHHHHHHHHHhcC--------------
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-D-------LSSLNSQLFSYTRSRNFPATWALFCYMHSTC-------------- 71 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~-------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~-------------- 71 (175)
+-.++...|+++.|...|++..+ | + ...|..+..++.+.|++++|...|.+..+..
T Consensus 44 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (258)
T 3uq3_A 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHH
Confidence 66778888888888888888653 2 1 4678888888888899999988888887632
Q ss_pred ----------CCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--
Q 045063 72 ----------LNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE-- 138 (175)
Q Consensus 72 ----------~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-- 138 (175)
..|+ ...+..+-..+...|++++|...+++..+.. +.+...|..+...|.+.|++++|.+.|+...
T Consensus 124 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 124 ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 2333 3467777788888888889988888888753 3456788888888888999999888888875
Q ss_pred CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 139 FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 139 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.| +...|..+...+.+.|+.++|.+.|++..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23 566788888888888999999888887754
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.19 E-value=8.7e-10 Score=78.62 Aligned_cols=153 Identities=7% Similarity=-0.163 Sum_probs=117.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC-------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG-------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~ 88 (175)
+.......|+++.|...|+++.+. +...|..+..++...|++++|...|.+..+.. +.+..++..+-.++.+
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH
Confidence 444566778899999998887542 45668888888889999999999999887652 2356688888888888
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
.|++++|...+++..+.. +.+...+..+...|.+.|++++|...|+... .|+...+..++..+...|+.++|...++
T Consensus 90 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999888753 3356788888889999999999999888876 4555555555555667788888888887
Q ss_pred HHHh
Q 045063 167 AMTR 170 (175)
Q Consensus 167 ~m~~ 170 (175)
+...
T Consensus 169 ~~~~ 172 (275)
T 1xnf_A 169 QHFE 172 (275)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.19 E-value=8.6e-10 Score=77.76 Aligned_cols=156 Identities=8% Similarity=0.023 Sum_probs=131.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcC--CCCC----HhhHHHHHHHHh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTC--LNLT----AYTFTPVLGACS 87 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~~~----~~t~~~ll~~~~ 87 (175)
+-..+...|+++.|...|++..+ .+...|..+..++.+.|++++|.+.|.+..+.. ..++ ..++..+-.++.
T Consensus 11 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (258)
T 3uq3_A 11 EGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH 90 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH
Confidence 55677889999999999998643 677889999999999999999999999987642 2223 468889999999
Q ss_pred cCCCchhHHHHHHHHHHhC------------------------CCc-chHHHHHHHHHHHhcCChHHHHHHHHhcc---C
Q 045063 88 ALPAPERGKQVHALMIKGG------------------------TDS-EPVVKTALMDMYSKYGLLGESVEAFKEIE---F 139 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~------------------------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~ 139 (175)
+.|++++|...+++..+.. ..| +...|..+...|...|++++|...++... .
T Consensus 91 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 170 (258)
T 3uq3_A 91 KLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 9999999999999998732 223 34578889999999999999999999976 2
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 140 KDVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 140 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.+...|..+...|.+.|++++|...|++..+.
T Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 36778999999999999999999999998754
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.19 E-value=7.9e-10 Score=77.21 Aligned_cols=152 Identities=12% Similarity=0.020 Sum_probs=118.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhC-----------CCcchHHHHHHHHHhcCCCCCHhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRS-----------RNFPATWALFCYMHSTCLNLTAYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~-----------g~~~~a~~l~~~m~~~~~~~~~~t~~~ 81 (175)
+-.++.+.|++++|...|++..+ | +...|..+-.++.+. |++++|...|.+..+.. +-+...+..
T Consensus 45 lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~ 123 (217)
T 2pl2_A 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQ 123 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 66788899999999999998753 4 667889999999999 99999999999987652 124568888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCCh
Q 045063 82 VLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLA 158 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~ 158 (175)
+-.++.+.|++++|...+++..+.. .+...+..+..+|...|++++|...|+... .| +...+..+...+.+.|+.
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence 8899999999999999999999877 788899999999999999999999999976 34 667888999999999999
Q ss_pred HHHHHHHHHHHh
Q 045063 159 KEAFGVFQAMTR 170 (175)
Q Consensus 159 ~~a~~~~~~m~~ 170 (175)
++|...|++...
T Consensus 202 ~~A~~~~~~~~~ 213 (217)
T 2pl2_A 202 EEAARAAALEHH 213 (217)
T ss_dssp ------------
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
No 35
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=6.7e-10 Score=90.57 Aligned_cols=152 Identities=5% Similarity=-0.046 Sum_probs=132.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~ 91 (175)
|=.++.+.|++++|.+.|++..+ | +...|+.+-.+|.+.|++++|++.|++..+. .|+ ...|..+-.++.+.|+
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 92 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 67788899999999999999753 4 6778999999999999999999999998765 344 5589999999999999
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+++|.+.|++..+.. +-+...|+.+-..|.+.|++++|.+.|++.. .| +...|..+...|...|++++|.+.+++.
T Consensus 93 ~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 93 VQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 999999999998753 2346799999999999999999999999876 44 5678999999999999999999998886
Q ss_pred Hh
Q 045063 169 TR 170 (175)
Q Consensus 169 ~~ 170 (175)
.+
T Consensus 172 l~ 173 (723)
T 4gyw_A 172 VS 173 (723)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.14 E-value=7e-09 Score=73.90 Aligned_cols=155 Identities=9% Similarity=-0.037 Sum_probs=126.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH--hhHHHHHHHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA--YTFTPVLGACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~t~~~ll~~~~~~~ 90 (175)
.-..+...|+++.|...|++..+ | +...|..+..+|.+.|++++|.+.|.+..+.+-.|+. .+|..+-.++.+.|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 45677889999999999999753 3 5668999999999999999999999999874422322 34888999999999
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
++++|...++...+.. +.+...|..+...|...|++++|.+.|+...+ | +...|..+-..+...+++++|...|++
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 167 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998853 34567999999999999999999999999874 3 455666666345556699999999998
Q ss_pred HHhc
Q 045063 168 MTRE 171 (175)
Q Consensus 168 m~~~ 171 (175)
..+.
T Consensus 168 a~~~ 171 (272)
T 3u4t_A 168 VLEL 171 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.12 E-value=7.7e-10 Score=80.65 Aligned_cols=148 Identities=10% Similarity=-0.027 Sum_probs=127.2
Q ss_pred hhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 19 ADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
.+...|+++.|.+.|+++.+ .+...+..+...+.+.|++++|.+.|.+..+.. +.+..++..+...+.+.|++++|
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 47888999999999998753 367789999999999999999999999987663 33566899999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-------------CchhHHHHHHHHHhcCChHH
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-------------DVVTWNALLSSFLRHGLAKE 160 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-------------~~~~~~~li~~~~~~g~~~~ 160 (175)
...+++..+.. +.+...|..+...|.+.|++++|.+.++... .| +...|..+..++.+.|+.++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 99999998753 3457789999999999999999999999875 23 35689999999999999999
Q ss_pred HHHHHHHH
Q 045063 161 AFGVFQAM 168 (175)
Q Consensus 161 a~~~~~~m 168 (175)
|..++++.
T Consensus 305 A~~~~~~~ 312 (327)
T 3cv0_A 305 VELTYAQN 312 (327)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHHH
Confidence 99988754
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.12 E-value=6.2e-09 Score=75.82 Aligned_cols=91 Identities=7% Similarity=-0.097 Sum_probs=47.0
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR 154 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~ 154 (175)
.+..+...+.+.|++++|...+++..+.. +.+...|..+...|.+.|++++|.+.|+... .| +...|..+...|.+
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44444445555555555555555555432 2234455555555555555555555555543 12 34455555555555
Q ss_pred cCChHHHHHHHHHHH
Q 045063 155 HGLAKEAFGVFQAMT 169 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~ 169 (175)
.|++++|.+.|++..
T Consensus 253 ~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAI 267 (327)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 566666655555543
No 39
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.09 E-value=3e-09 Score=82.28 Aligned_cols=153 Identities=7% Similarity=-0.061 Sum_probs=132.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
+...+...|+++.|...|++..+ |+...|..+..++.+.|++++|...|.+..+.. +.+..++..+...+...|+++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHH
Confidence 77788899999999999998753 447778999999999999999999999997653 235568889999999999999
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+|...+++..+.. +.+...+..+...|.+.|++++|...++...+ | +...|..+...|.+.|++++|...+++..+
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999998753 34677899999999999999999999998762 3 677899999999999999999999998865
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.08 E-value=5.6e-09 Score=81.33 Aligned_cols=153 Identities=14% Similarity=0.017 Sum_probs=132.5
Q ss_pred hhhhhcCCCChhHHHHHhhhcc--CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 16 ISIADALPKRYVYTHQVFDEIS--HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
+-..+...|+++.|...|++.. .|+...|..+...+.+.|++++|...|.+..+.. +.+..++..+-..+.+.|+++
T Consensus 249 ~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 249 TGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 4467788899999999999975 3667788999999999999999999999997763 235668999999999999999
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+|...+++..+.. +.+...|..+...|...|++++|...++... .| +...|..+...+.+.|++++|...|++..+
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999864 3356789999999999999999999999876 33 667899999999999999999999999765
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.07 E-value=5.8e-09 Score=76.75 Aligned_cols=152 Identities=4% Similarity=-0.082 Sum_probs=103.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC----CHhhHHHH------
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL----TAYTFTPV------ 82 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~----~~~t~~~l------ 82 (175)
+-.++...|+++.|...|++..+ | +...|..+..++.+.|++++|...|.+..+. .| +...+..+
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 43 RATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEM 120 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHH
Confidence 55666677777777777776542 2 4566777777777777777777777777544 23 22233333
Q ss_pred ------HHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHHH
Q 045063 83 ------LGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSFL 153 (175)
Q Consensus 83 ------l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~~ 153 (175)
...+...|++++|...++...+.. +.+...+..+...|...|++++|...++...+ .+...|..+...|.
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 356667777777777777777653 34556777777778888888888877777653 25567777777788
Q ss_pred hcCChHHHHHHHHHHHh
Q 045063 154 RHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 154 ~~g~~~~a~~~~~~m~~ 170 (175)
..|++++|...|++..+
T Consensus 200 ~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 88888888888777654
No 42
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.07 E-value=2.3e-09 Score=82.90 Aligned_cols=147 Identities=9% Similarity=-0.019 Sum_probs=127.7
Q ss_pred CCCChhHHHHHhhhccC----------------C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHH
Q 045063 22 LPKRYVYTHQVFDEISH----------------G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLG 84 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~ 84 (175)
+.|+++.|...|+++.+ | +...|..+..++.+.|++++|...|++..+.... ...+..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHH
Confidence 58999999999998754 2 3567888999999999999999999999876543 778999999
Q ss_pred HHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHH
Q 045063 85 ACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a 161 (175)
++...|++++|...++...+.. +.+...|..+...|...|++++|...++... ..+...|..+...|...|++++|
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999998753 3467789999999999999999999999875 23677899999999999999999
Q ss_pred HHHHHHHHhc
Q 045063 162 FGVFQAMTRE 171 (175)
Q Consensus 162 ~~~~~~m~~~ 171 (175)
...+++..+.
T Consensus 358 ~~~~~~~~~~ 367 (514)
T 2gw1_A 358 ETLFSEAKRK 367 (514)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.07 E-value=6.1e-09 Score=76.36 Aligned_cols=154 Identities=10% Similarity=0.039 Sum_probs=123.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-Cch-hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHH-hcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLS-SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGAC-SALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~-~~~~ 90 (175)
+...+.+.|+++.|..+|++..+ | +.. .|..+...+.+.|++++|.++|.+..+... .+...|....... ...|
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcC
Confidence 67778889999999999999754 3 343 799999999999999999999999977632 3344454333332 2379
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC-------CchhHHHHHHHHHhcCChHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK-------DVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
+.++|..+|+...+.. +-+...|..++..+.+.|++++|..+|+..... ....|..++....+.|+.+.|..
T Consensus 184 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 184 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998752 346779999999999999999999999998651 34579999999999999999999
Q ss_pred HHHHHHhc
Q 045063 164 VFQAMTRE 171 (175)
Q Consensus 164 ~~~~m~~~ 171 (175)
++++..+.
T Consensus 263 ~~~~a~~~ 270 (308)
T 2ond_A 263 VEKRRFTA 270 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
No 44
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.07 E-value=2.3e-09 Score=77.58 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=126.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-------C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCC-Hh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-------G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLT-AY 77 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~-~~ 77 (175)
+-..|...|++++|...|++... + ....+..+...|...|++++|...|.+..+. +-.|. ..
T Consensus 75 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 75 LALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 77788899999999999998642 1 3556889999999999999999999998754 22333 34
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHh------CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC-----------
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKG------GTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF----------- 139 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------- 139 (175)
.+..+-..+...|++++|...+++..+. +-.|+ ...+..+...|.+.|++++|.+.++...+
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 7888889999999999999999999864 22333 45789999999999999999999988652
Q ss_pred ----------------------------------------C-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 140 ----------------------------------------K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 140 ----------------------------------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
| +..+|..+...|.+.|++++|.+.|++..+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 345688899999999999999999998765
No 45
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.06 E-value=6.7e-09 Score=76.43 Aligned_cols=153 Identities=7% Similarity=-0.042 Sum_probs=129.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-..+.+.|+++.|...|++..+ .+...|..+..++.+.|++++|...|++..+.. +-+...+..+-.++.+.|++
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCCh
Confidence 45677889999999999998753 367789999999999999999999999997762 23456899999999999999
Q ss_pred hhHHHHHHHHHHhCCCc----chHHHHHH------------HHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDS----EPVVKTAL------------MDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFL 153 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~ 153 (175)
++|...++...+. .| +...+..+ ...+...|++++|.+.++... .| +...|..+...+.
T Consensus 88 ~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 88 DEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 9999999999874 34 44455555 588999999999999999976 23 6778999999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 045063 154 RHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~ 171 (175)
..|++++|...+++..+.
T Consensus 166 ~~~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKL 183 (359)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 46
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.05 E-value=4.4e-09 Score=76.08 Aligned_cols=155 Identities=14% Similarity=0.060 Sum_probs=127.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--------C---CchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCC-Hh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--------G---DLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLT-AY 77 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~-~~ 77 (175)
+-..+...|+++.|...|++..+ . ....+..+..+|...|++++|...|.+..+. +-.|. ..
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 77888899999999999998754 1 3456888999999999999999999998754 22333 45
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHh------CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-------C---
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKG------GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF-------K--- 140 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~--- 140 (175)
++..+-..+...|++++|...+++..+. +-.| ....+..+...|...|++++|.+.++...+ +
T Consensus 113 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 192 (311)
T 3nf1_A 113 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDP 192 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 8888899999999999999999998864 2223 345788999999999999999999988752 1
Q ss_pred -CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 141 -DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 141 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
...+|..+...|.+.|++++|...+++..+
T Consensus 193 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 193 NVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 244688899999999999999999999875
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.04 E-value=5.8e-09 Score=74.30 Aligned_cols=153 Identities=11% Similarity=-0.046 Sum_probs=113.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-.++...|+++.|...|++..+ .+...|..+..+|.+.|++++|.+.|.+..+.. +.+..++..+-.++.+.|++
T Consensus 49 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 49 RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccH
Confidence 77778888999999999988753 357778888899999999999999999887652 23456788888888899999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc---------------------------------cC
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI---------------------------------EF 139 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---------------------------------~~ 139 (175)
++|...+++..+.. |+.......+..+...|++++|...++.. ..
T Consensus 128 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 128 KLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 99999998888743 44443333444445556666666666432 21
Q ss_pred C-------CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 140 K-------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 140 ~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
. +...|..+...|.+.|++++|...|++..+.
T Consensus 206 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 206 DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 1 1467788888899999999999999988754
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.04 E-value=4.3e-09 Score=81.89 Aligned_cols=152 Identities=10% Similarity=0.012 Sum_probs=132.5
Q ss_pred hhhhhcCCCCh-hHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC--
Q 045063 16 ISIADALPKRY-VYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL-- 89 (175)
Q Consensus 16 ll~~~~~~~~~-~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~-- 89 (175)
+-.++...|++ ++|.+.|++..+ | +...|..+-.+|.+.|++++|.+.|.+..+.. |+...+..+-..+...
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~ 185 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQT 185 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhcc
Confidence 66778899999 999999998753 3 57789999999999999999999999987654 6678889999999999
Q ss_pred -------CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc--------CChHHHHHHHHhcc--CC----CchhHHHH
Q 045063 90 -------PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY--------GLLGESVEAFKEIE--FK----DVVTWNAL 148 (175)
Q Consensus 90 -------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~--~~----~~~~~~~l 148 (175)
|++++|...+++..+.. +.+...|..+..+|... |++++|.+.|+... .| +...|..+
T Consensus 186 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~l 264 (474)
T 4abn_A 186 DSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNR 264 (474)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHH
T ss_pred CChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHH
Confidence 99999999999998863 34577999999999998 99999999999876 33 66789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 045063 149 LSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~ 170 (175)
-..|.+.|++++|.+.|++..+
T Consensus 265 g~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 265 ATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 49
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=4.6e-09 Score=66.38 Aligned_cols=122 Identities=9% Similarity=0.003 Sum_probs=104.1
Q ss_pred hhhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063 15 CISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91 (175)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~ 91 (175)
.+...+...|+++.|...|+++.+ .+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|+
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 84 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD 84 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcC
Confidence 356678888999999999998753 366778889999999999999999999997763 3456688888999999999
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+++|...++++.+.. +.+...+..+...|.+.|++++|...++.+.
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 999999999998764 3457788999999999999999999998865
No 50
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=6.2e-09 Score=74.11 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=126.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC----------C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCC-Hh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH----------G-DLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLT-AY 77 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~-~~ 77 (175)
+-..|...|+++.|...|++..+ + ...+|..+-.+|...|++++|.+.|.+..+. .-.|+ ..
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 128 (283)
T 3edt_B 49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 77888899999999999998642 1 3556899999999999999999999998654 11233 45
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHh------CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-----------
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKG------GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF----------- 139 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------- 139 (175)
++..+-..+...|++++|...+++..+. +-.| ...++..+...|.+.|++++|.+.++...+
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 8888999999999999999999999864 1133 346889999999999999999999987652
Q ss_pred ----------------------------------------C-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 140 ----------------------------------------K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 140 ----------------------------------------~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
| ...+|..+...|.+.|++++|...|++..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 123678888999999999999999998765
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.98 E-value=4.2e-08 Score=70.29 Aligned_cols=143 Identities=10% Similarity=-0.033 Sum_probs=83.0
Q ss_pred CCChhHHHHHhhhccC-CCchhHHHHHHHHHh----CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc----CCCch
Q 045063 23 PKRYVYTHQVFDEISH-GDLSSLNSQLFSYTR----SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA----LPAPE 93 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~----~~~~~ 93 (175)
.++++.|...|++..+ .+...+..+-..|.. .+++++|...|++..+.+ +...+..+-..+.+ .++++
T Consensus 55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHH
Confidence 5666666666665443 244555556666666 666666666666655543 44455555555555 66666
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccCC-CchhHHHHHHHHHh----cCChHHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEFK-DVVTWNALLSSFLR----HGLAKEAFGV 164 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~a~~~ 164 (175)
+|...+++..+.+ +...+..+-..|.. .+++++|.+.|+...+. +...+..+-..|.. .++.++|...
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 208 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALAR 208 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 6666666665543 34455555555555 66666666666655433 44455555666666 6666666666
Q ss_pred HHHHHhc
Q 045063 165 FQAMTRE 171 (175)
Q Consensus 165 ~~~m~~~ 171 (175)
|++..+.
T Consensus 209 ~~~a~~~ 215 (273)
T 1ouv_A 209 YSKACEL 215 (273)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 6665544
No 52
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.95 E-value=2.6e-08 Score=66.39 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 121 (175)
..|..+...+.+.|++++|.+.|++..+. .+.+...+..+...+...|++++|...++...+.. +.+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45777888899999999999999998654 22356688889999999999999999999998763 34677899999999
Q ss_pred HhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 122 SKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 122 ~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
...|++++|.+.++... ..+...|..+...+...|++++|...+++..+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 99999999999999876 336778888999999999999999999998754
No 53
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=1.8e-08 Score=71.64 Aligned_cols=150 Identities=11% Similarity=-0.007 Sum_probs=120.0
Q ss_pred cCCCChhHHHHHhhhccC-------C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc------CCCCC-HhhHHHH
Q 045063 21 ALPKRYVYTHQVFDEISH-------G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST------CLNLT-AYTFTPV 82 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~------~~~~~-~~t~~~l 82 (175)
...|+++.|...|++..+ + ...++..+-.+|...|++++|...|.+..+. +-.|. ..++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456788888888776532 2 3556889999999999999999999998754 22333 3488999
Q ss_pred HHHHhcCCCchhHHHHHHHHHHh------CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-------C----Cchh
Q 045063 83 LGACSALPAPERGKQVHALMIKG------GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF-------K----DVVT 144 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~----~~~~ 144 (175)
-.++...|++++|...+.+..+. .-.| ....+..+...|...|++++|.+.++...+ + ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 1123 356889999999999999999999988752 1 2457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 145 WNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
|..+...|.+.|++++|...+++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88899999999999999999998865
No 54
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.93 E-value=5.7e-08 Score=75.60 Aligned_cols=145 Identities=10% Similarity=0.004 Sum_probs=123.6
Q ss_pred CChhHHHHHhhhccC--CC--------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 24 KRYVYTHQVFDEISH--GD--------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~--~~--------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
|+++.|..+|+++.+ |+ ..+|..+-..+...|++++|...|.+..+. .|+..++..+-..+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 478899999998764 32 224777778888999999999999999775 355778999999999999999
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+|...++...+.. +.+..+|..+...|...|++++|.+.|+... .| +...|..+...|.+.|++++|...+++..+
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 372 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL 372 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999998764 3467789999999999999999999999876 33 677899999999999999999999999876
Q ss_pred c
Q 045063 171 E 171 (175)
Q Consensus 171 ~ 171 (175)
.
T Consensus 373 ~ 373 (537)
T 3fp2_A 373 K 373 (537)
T ss_dssp H
T ss_pred h
Confidence 4
No 55
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=4.8e-08 Score=77.34 Aligned_cols=147 Identities=7% Similarity=-0.130 Sum_probs=111.0
Q ss_pred CCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHH
Q 045063 23 PKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVH 99 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~ 99 (175)
.|++++|.+.|++..+ | +...|..+-..+.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998754 3 56778999999999999999999999987652 234568888899999999999999999
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 045063 100 ALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRH---GLAKEAFGVFQAMTRE 171 (175)
Q Consensus 100 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 171 (175)
++..+.. +.+...+..+..+|.+.|++++|.+.++... .| +...|..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998763 3456789999999999999999999999876 33 567888899999999 9999999999988764
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.92 E-value=1.1e-07 Score=68.14 Aligned_cols=146 Identities=11% Similarity=-0.005 Sum_probs=72.3
Q ss_pred hhcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHh----CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc----C
Q 045063 19 ADALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTR----SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA----L 89 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~----~ 89 (175)
.+...|++++|.+.|++..++ +...+..+-..|.. .|++++|.+.|.+..+.+ +...+..+-..+.. .
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~ 91 (273)
T 1ouv_A 15 KSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVS 91 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcc
Confidence 344445555555555554433 33444445555555 555555555555554443 33444444444544 5
Q ss_pred CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccCC-CchhHHHHHHHHHh----cCChHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEFK-DVVTWNALLSSFLR----HGLAKE 160 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~ 160 (175)
+++++|...+++..+.+ +...+..+-..|.. .|++++|.+.|+...+. +...+..+-..|.. .++.++
T Consensus 92 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~ 168 (273)
T 1ouv_A 92 QNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKK 168 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHH
Confidence 55555555555555432 34445555555555 55555555555554432 33344444444444 555555
Q ss_pred HHHHHHHHHh
Q 045063 161 AFGVFQAMTR 170 (175)
Q Consensus 161 a~~~~~~m~~ 170 (175)
|...|++..+
T Consensus 169 A~~~~~~a~~ 178 (273)
T 1ouv_A 169 ALASYDKACD 178 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.92 E-value=1.1e-07 Score=63.98 Aligned_cols=130 Identities=6% Similarity=-0.068 Sum_probs=110.9
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
++..|..+-.+|.+.|++++|.+.|++..+.. +-+..++..+-.++.+.|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 46679999999999999999999999987652 2245588899999999999999999999988764 345668888889
Q ss_pred HHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 120 MYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.+...++++.|.+.+.... .| +...|..+-..|.+.|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 9999999999999998876 33 6778999999999999999999999988763
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.92 E-value=5.3e-08 Score=71.33 Aligned_cols=147 Identities=4% Similarity=-0.078 Sum_probs=119.0
Q ss_pred CCCCh-------hHHHHHhhhccC---C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-h-hHHHHHHHHhc
Q 045063 22 LPKRY-------VYTHQVFDEISH---G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-Y-TFTPVLGACSA 88 (175)
Q Consensus 22 ~~~~~-------~~a~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~-t~~~ll~~~~~ 88 (175)
+.|++ ++|..+|++... | +...|..+...+.+.|++++|.++|++..+ +.|+. . .|..+...+.+
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~ 146 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARR 146 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHH
Confidence 35776 899999998653 3 556899999999999999999999999977 34543 3 79999999999
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH-hcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS-KYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
.|++++|..+|++..+.. +++...|........ ..|++++|..+|+...+ | +...|..++..+.+.|+.++|..+
T Consensus 147 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 225 (308)
T 2ond_A 147 AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225 (308)
T ss_dssp HHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998753 234455554443322 36999999999998763 3 677899999999999999999999
Q ss_pred HHHHHhc
Q 045063 165 FQAMTRE 171 (175)
Q Consensus 165 ~~~m~~~ 171 (175)
|++....
T Consensus 226 ~~~al~~ 232 (308)
T 2ond_A 226 FERVLTS 232 (308)
T ss_dssp HHHHHHS
T ss_pred HHHHHhc
Confidence 9998875
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.91 E-value=8.8e-08 Score=66.76 Aligned_cols=140 Identities=11% Similarity=0.045 Sum_probs=112.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~ 90 (175)
.-..+.+.|+++.|...|++..+ ++...+..+-.++.+.|++++|...|.+..+. .| +...+..+-.++.+.|
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~ 90 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMK 90 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcc
Confidence 44567788999999999998642 56667777899999999999999999998764 34 4458888999999999
Q ss_pred CchhHHHHHHHHHHhCCCcch-------HHHHHHHHHHHhcCChHHHHHHHHhccCC--C---chhHHHHHHHHHhcCCh
Q 045063 91 APERGKQVHALMIKGGTDSEP-------VVKTALMDMYSKYGLLGESVEAFKEIEFK--D---VVTWNALLSSFLRHGLA 158 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~---~~~~~~li~~~~~~g~~ 158 (175)
++++|...+++..+... .+. ..|..+-..+.+.|++++|.+.|+...+. + ...|..+-..|...|+.
T Consensus 91 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 91 NNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999987532 233 45777788889999999999999998743 3 34677777778777777
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.85 E-value=2.4e-07 Score=64.51 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=110.9
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
|...|...-..+.+.|++++|...|.+..+...+++...+..+-.++.+.|++++|...+++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4567778888999999999999999999887554677777778899999999999999999998753 235678999999
Q ss_pred HHHhcCChHHHHHHHHhcc--CC-Cc-------hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 120 MYSKYGLLGESVEAFKEIE--FK-DV-------VTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~--~~-~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.|...|++++|...++... .| +. ..|..+-..+...|++++|.+.|++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999876 34 33 45777778889999999999999988754
No 61
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=7.1e-08 Score=64.85 Aligned_cols=152 Identities=8% Similarity=-0.043 Sum_probs=115.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH-HhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA-CSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~-~~~~~~ 91 (175)
.-..+.+.|+++.|...|++..+ .+...+..+-.++.+.|++++|...|++..+.. |+...+...... +.+.+.
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc
Confidence 55677889999999999999764 367789999999999999999999999975542 333322221111 122223
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC---chhHHHHHHHHHhcCChHHHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KD---VVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
...+...+++..+.. +-+...+..+...|...|++++|...|+...+ |+ ...|..+...+...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 345677888877643 23577899999999999999999999998763 32 4579999999999999999999998
Q ss_pred HHHh
Q 045063 167 AMTR 170 (175)
Q Consensus 167 ~m~~ 170 (175)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.81 E-value=1.2e-07 Score=71.96 Aligned_cols=153 Identities=7% Similarity=-0.008 Sum_probs=126.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCC-cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRN-FPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~ 91 (175)
+-.++.+.|++++|...|++... | +...|+.+-.++.+.|+ +++|+..|++..+... -+...|..+-.++.+.|+
T Consensus 103 lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccC
Confidence 55567778999999999998753 3 67789999999999996 9999999999977532 255689999999999999
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh-cCChHHH-----H
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR-HGLAKEA-----F 162 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~-~g~~~~a-----~ 162 (175)
+++|...+++.++.. +-+...|..+-.++.+.|++++|...|+... .| +...|+.+-..+.+ .|..++| +
T Consensus 182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el 260 (382)
T 2h6f_A 182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREV 260 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 999999999999864 3467799999999999999999999999987 33 67789999999998 6665777 4
Q ss_pred HHHHHHHh
Q 045063 163 GVFQAMTR 170 (175)
Q Consensus 163 ~~~~~m~~ 170 (175)
+.|++..+
T Consensus 261 ~~~~~Al~ 268 (382)
T 2h6f_A 261 QYTLEMIK 268 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66766554
No 63
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.81 E-value=7.1e-08 Score=65.63 Aligned_cols=150 Identities=9% Similarity=-0.014 Sum_probs=112.0
Q ss_pred cCCCChhHHHH---HhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHHHHHHHhcCCCc
Q 045063 21 ALPKRYVYTHQ---VFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTPVLGACSALPAP 92 (175)
Q Consensus 21 ~~~~~~~~a~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ll~~~~~~~~~ 92 (175)
...|++++|.+ .+..-+......+..+-..+...|++++|...|.+.... +..+. ..++..+-..+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 46799999999 554433345667899999999999999999999998652 22222 34778888889999999
Q ss_pred hhHHHHHHHHHHh----CCCc--chHHHHHHHHHHHhcCChHHHHHHHHhccC-----CC----chhHHHHHHHHHhcCC
Q 045063 93 ERGKQVHALMIKG----GTDS--EPVVKTALMDMYSKYGLLGESVEAFKEIEF-----KD----VVTWNALLSSFLRHGL 157 (175)
Q Consensus 93 ~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~ 157 (175)
++|...+++..+. +-.+ ....+..+-..|...|++++|.+.+++..+ .+ ..++..+-..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999988753 2122 234678888999999999999999888651 12 2245777888999999
Q ss_pred hHHHHHHHHHHHh
Q 045063 158 AKEAFGVFQAMTR 170 (175)
Q Consensus 158 ~~~a~~~~~~m~~ 170 (175)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888654
No 64
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=2.2e-07 Score=63.84 Aligned_cols=123 Identities=11% Similarity=-0.087 Sum_probs=98.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
+-..+...|+++.|...|++...++...|..+..+|.+.|++++|.+.|.+..+.. +.+...+..+-.++.+.|++++|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHH
Confidence 34556678999999999999887888888999999999999999999999887653 33456888888888999999999
Q ss_pred HHHHHHHHHhCC--------------Cc-chHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063 96 KQVHALMIKGGT--------------DS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 96 ~~~~~~m~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 139 (175)
...++...+... .| +...+..+..+|.+.|++++|.+.|+...+
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999998886421 11 226788888889999999999999888763
No 65
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=2.2e-07 Score=63.84 Aligned_cols=124 Identities=10% Similarity=0.013 Sum_probs=106.6
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYS 122 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 122 (175)
.+..+-..+.+.|++++|...|.+. +.|+...+..+-.++.+.|++++|...+++..+.. +.+...|..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 4556677888999999999999987 46788899999999999999999999999998764 346678999999999
Q ss_pred hcCChHHHHHHHHhccC--C-Cc----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 123 KYGLLGESVEAFKEIEF--K-DV----------------VTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 123 ~~g~~~~a~~~~~~m~~--~-~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
+.|++++|.+.|+...+ | +. ..|..+-.+|.+.|+.++|.+.|++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999998763 2 22 67888999999999999999999987654
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.79 E-value=1.1e-07 Score=67.77 Aligned_cols=155 Identities=6% Similarity=0.037 Sum_probs=120.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-C---chhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-D---LSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACS 87 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~ 87 (175)
+-..+.+.|+++.|...|+++.. | + ...+..+-.+|.+.|++++|...|++..+... .|. ...+..+-.++.
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~ 100 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY 100 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH
Confidence 56677789999999999999864 3 3 45678888999999999999999999977532 233 346667777777
Q ss_pred c--------CCCchhHHHHHHHHHHhCCCcchHHH-----------------HHHHHHHHhcCChHHHHHHHHhccC--C
Q 045063 88 A--------LPAPERGKQVHALMIKGGTDSEPVVK-----------------TALMDMYSKYGLLGESVEAFKEIEF--K 140 (175)
Q Consensus 88 ~--------~~~~~~a~~~~~~m~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~--~ 140 (175)
+ .|++++|...+++..+... -+...+ -.+...|.+.|++++|...|+...+ |
T Consensus 101 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 101 KLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp HHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 7 9999999999999987532 222333 4557889999999999999999863 4
Q ss_pred C----chhHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 045063 141 D----VVTWNALLSSFLRH----------GLAKEAFGVFQAMTRE 171 (175)
Q Consensus 141 ~----~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 171 (175)
+ ...+..+..+|... |++++|...|++..+.
T Consensus 180 ~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 180 DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3 23577777778766 8899999999988753
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.79 E-value=2.1e-07 Score=76.01 Aligned_cols=129 Identities=9% Similarity=-0.025 Sum_probs=112.4
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM 118 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 118 (175)
+...|+.+-..|.+.|++++|.+.|++..+. .|+ ..++..+-.++.+.|++++|.+.|++..+.. +-+...|..+-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567999999999999999999999998765 344 5689999999999999999999999998853 23467999999
Q ss_pred HHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 119 DMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.+|.+.|++++|.+.|++.. .| +...|+.+-..|.+.|++++|++.|++..+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999876 34 6678999999999999999999999987653
No 68
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.76 E-value=2.4e-07 Score=67.24 Aligned_cols=154 Identities=8% Similarity=-0.041 Sum_probs=118.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC-----C----chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CC----HhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG-----D----LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LT----AYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~-----~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~----~~t~~~ 81 (175)
.+..+.+.|+++.|.+.+++.... + ...+..+...+...|++++|+..|.+..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 366778899999999999987542 1 123445777777888999999999999874322 22 226899
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHh-----CCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccC----C-C----chhHH
Q 045063 82 VLGACSALPAPERGKQVHALMIKG-----GTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEF----K-D----VVTWN 146 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~----~~~~~ 146 (175)
+-.++...|++++|...+++..+. +..+.. .++..+...|.+.|++++|.+.++...+ . + ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998841 222222 3789999999999999999999887652 1 1 45788
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHH
Q 045063 147 ALLSSFLRHGL-AKEAFGVFQAMT 169 (175)
Q Consensus 147 ~li~~~~~~g~-~~~a~~~~~~m~ 169 (175)
.+-.+|.+.|+ .++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 88889999995 699998888754
No 69
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.75 E-value=1.8e-07 Score=73.43 Aligned_cols=153 Identities=10% Similarity=0.021 Sum_probs=119.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CC--chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHH-HHHhcCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GD--LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVL-GACSALP 90 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll-~~~~~~~ 90 (175)
+...+.+.|+++.|..+|++..+ |+ ...|..+...+.+.|++++|.++|.+..+... .+...|.... -.+...|
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcC
Confidence 66777889999999999998753 33 24799999999999999999999999877522 1222222211 1233589
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-C----chhHHHHHHHHHhcCChHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-D----VVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~----~~~~~~li~~~~~~g~~~~a~~ 163 (175)
+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|+.... | + ...|...+.-....|+.+.+..
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988752 34578999999999999999999999999763 2 2 2379888998889999999999
Q ss_pred HHHHHHh
Q 045063 164 VFQAMTR 170 (175)
Q Consensus 164 ~~~~m~~ 170 (175)
+++++.+
T Consensus 485 ~~~r~~~ 491 (530)
T 2ooe_A 485 VEKRRFT 491 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888764
No 70
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.74 E-value=2.3e-07 Score=65.91 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=105.2
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc--hHHHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE--PVVKTALMDM 120 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~ 120 (175)
.+-..-..+.+.|++++|.+.|.+..+... -+...+..+-.++.+.|++++|...+++..+..-.++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 445566788899999999999999976522 2344888888899999999999999999988432222 2348999999
Q ss_pred HHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 121 YSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
|...|++++|.+.|+...+ | +...|..+-..|...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 9999999999999998762 3 6678999999999999999999999887653
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.74 E-value=1.8e-08 Score=78.38 Aligned_cols=152 Identities=11% Similarity=-0.054 Sum_probs=127.8
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhC---------CCcchHHHHHHHHHhcCCCCCHhhHHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRS---------RNFPATWALFCYMHSTCLNLTAYTFTPVLG 84 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~---------g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~ 84 (175)
+-.+|.+.|++++|.+.|++..+ |+...+..+-.+|.+. |++++|.+.|++..+.. +-+...|..+-.
T Consensus 143 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 221 (474)
T 4abn_A 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGN 221 (474)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77888899999999999999753 6778889999999999 99999999999987753 234568888888
Q ss_pred HHhcC--------CCchhHHHHHHHHHHhCCC--cchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHH
Q 045063 85 ACSAL--------PAPERGKQVHALMIKGGTD--SEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSS 151 (175)
Q Consensus 85 ~~~~~--------~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~ 151 (175)
++... |++++|...+++..+.... -+...|..+..+|.+.|++++|.+.|+... .| +...|..+-..
T Consensus 222 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~ 301 (474)
T 4abn_A 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQL 301 (474)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88888 8999999999999985311 367899999999999999999999999876 34 55678888899
Q ss_pred HHhcCChHHHHHHHHHH
Q 045063 152 FLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 152 ~~~~g~~~~a~~~~~~m 168 (175)
+...|++++|.+.+.++
T Consensus 302 ~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 302 LEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998765544
No 72
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1.3e-07 Score=76.81 Aligned_cols=147 Identities=8% Similarity=-0.097 Sum_probs=121.2
Q ss_pred cCCCChhHHHHHhhhcc-----------CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063 21 ALPKRYVYTHQVFDEIS-----------HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~ 89 (175)
...|++++|.+.|++.. ..+...|..+-.++.+.|++++|.+.|++..+.. +-+...|..+-.++.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999999876 2366778888899999999999999999987652 23456888888889999
Q ss_pred CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++ .+.|+... .| +...|..+-.++.+.|+.++|.+.|+
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999988753 2356788899999999999999 88888865 34 56788889999999999999999998
Q ss_pred HHHh
Q 045063 167 AMTR 170 (175)
Q Consensus 167 ~m~~ 170 (175)
+..+
T Consensus 559 ~al~ 562 (681)
T 2pzi_A 559 EVPP 562 (681)
T ss_dssp TSCT
T ss_pred hhcc
Confidence 7654
No 73
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.73 E-value=3e-07 Score=60.37 Aligned_cols=137 Identities=4% Similarity=-0.074 Sum_probs=106.4
Q ss_pred hhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 19 ADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
++...|+++.|...+...... +...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.++.+.|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 455678999999999887643 45556678899999999999999999987652 23456899999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHH-HHhcc--CC-CchhHHHHHHHHHhcCC
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEA-FKEIE--FK-DVVTWNALLSSFLRHGL 157 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~m~--~~-~~~~~~~li~~~~~~g~ 157 (175)
...|++..+.. +-+...|..+...|.+.|++++|.+. ++... .| +..+|+..-..+.+.|+
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999998853 23567899999999999999876655 45543 44 66677776666666664
No 74
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.72 E-value=6.2e-07 Score=62.62 Aligned_cols=155 Identities=7% Similarity=0.062 Sum_probs=115.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CCH-hhHHHHHHHHh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GD----LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LTA-YTFTPVLGACS 87 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~~-~t~~~ll~~~~ 87 (175)
+-..+.+.|+++.|...|+++.. |+ ...+..+..+|.+.|++++|.+.|++..+.... +.. ..+-.+-.++.
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~ 89 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNM 89 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHH
Confidence 44567788999999999999863 43 246777889999999999999999998765322 221 13333333332
Q ss_pred ------------------cCCCchhHHHHHHHHHHhCCCcch-HHH-----------------HHHHHHHHhcCChHHHH
Q 045063 88 ------------------ALPAPERGKQVHALMIKGGTDSEP-VVK-----------------TALMDMYSKYGLLGESV 131 (175)
Q Consensus 88 ------------------~~~~~~~a~~~~~~m~~~~~~~~~-~~~-----------------~~li~~~~~~g~~~~a~ 131 (175)
..|+.++|...++..++. .|+. ..+ -.+...|.+.|++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 167 (225)
T 2yhc_A 90 ALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVV 167 (225)
T ss_dssp HHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 357889999999999874 2432 222 24456788999999999
Q ss_pred HHHHhcc--CCCc----hhHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 045063 132 EAFKEIE--FKDV----VTWNALLSSFLRHGLAKEAFGVFQAMTRER 172 (175)
Q Consensus 132 ~~~~~m~--~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 172 (175)
..|+.+. .|+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 9999987 3433 458888999999999999999999887754
No 75
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.72 E-value=9.7e-07 Score=64.85 Aligned_cols=140 Identities=9% Similarity=-0.026 Sum_probs=107.4
Q ss_pred HHHHhhhcc---CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 29 THQVFDEIS---HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 29 a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
|...|++.. .++..++..+-.++...|++++|++.+.+-...+..+ +...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455566543 2445556688899999999999999999986665433 445888889999999999999999999987
Q ss_pred hCCCc-----chHHHHHHHHHHH--hcC--ChHHHHHHHHhccCCCc--hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 105 GGTDS-----EPVVKTALMDMYS--KYG--LLGESVEAFKEIEFKDV--VTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 105 ~~~~~-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~m~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
. .| +..+...+..++. ..| ++.+|..+|+++.+... .+-..++.++.+.|++++|.+.++.+.+
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 56 4667777777743 334 99999999999975433 3445566689999999999999987654
No 76
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.71 E-value=1.8e-07 Score=67.96 Aligned_cols=151 Identities=7% Similarity=-0.097 Sum_probs=119.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh-HHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT-FTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t-~~~ll~~~~~~~~ 91 (175)
+-..+.+.|+++.|...|++..+ | +...+..+...+.+.|++++|...+++.... .|+... .......+.+.+.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~ 200 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAA 200 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcc
Confidence 55567788999999999998753 4 6677888999999999999999999988554 344432 2222333556777
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC---chhHHHHHHHHHhcCChHHHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KD---VVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~---~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
.+.+.+.+++..... +.+...+..+...|...|++++|.+.+....+ |+ ...+..+...|...|+.++|...++
T Consensus 201 ~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 201 DTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp SCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 888888888888753 34677999999999999999999999999873 42 5689999999999999999999888
Q ss_pred HHH
Q 045063 167 AMT 169 (175)
Q Consensus 167 ~m~ 169 (175)
+-.
T Consensus 280 ~al 282 (287)
T 3qou_A 280 RQL 282 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 77
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=1e-06 Score=57.78 Aligned_cols=127 Identities=7% Similarity=-0.050 Sum_probs=98.0
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
...|..+-..+.+.|++++|...|.+..+.. +.+..++..+-.++.+.|++++|...+.+..+.. +.+...|..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3457778888889999999999999987652 2356678888888889999999999999888753 3456788888899
Q ss_pred HHhcCChHHHHHHHHhccC--C-CchhHHHHHHH--HHhcCChHHHHHHHHHHH
Q 045063 121 YSKYGLLGESVEAFKEIEF--K-DVVTWNALLSS--FLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~--~~~~g~~~~a~~~~~~m~ 169 (175)
|...|++++|.+.|+...+ | +...+..+..+ +.+.|++++|...+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999988762 3 44455443333 778899999998887654
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.68 E-value=5.8e-07 Score=70.52 Aligned_cols=146 Identities=4% Similarity=-0.046 Sum_probs=116.5
Q ss_pred CCChh-------HHHHHhhhccC---C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH--hhHHHHHHHHhcC
Q 045063 23 PKRYV-------YTHQVFDEISH---G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA--YTFTPVLGACSAL 89 (175)
Q Consensus 23 ~~~~~-------~a~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~--~t~~~ll~~~~~~ 89 (175)
.|+++ .|..+|++..+ | +...|..+...+.+.|++++|.++|++..+. .|+. ..|........+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 68887 89999998753 4 5778999999999999999999999999874 4542 4788888888899
Q ss_pred CCchhHHHHHHHHHHhCCCcchHHHHHHHH-HHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVVKTALMD-MYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVF 165 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~ 165 (175)
|+.++|.++|++..+.. +.+...|-.... .|...|+.++|..+|+... .| +...|..++..+.+.|+.++|..+|
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 99999999999998742 122233322221 2346899999999999875 34 6788999999999999999999999
Q ss_pred HHHHhc
Q 045063 166 QAMTRE 171 (175)
Q Consensus 166 ~~m~~~ 171 (175)
++....
T Consensus 449 ~~al~~ 454 (530)
T 2ooe_A 449 ERVLTS 454 (530)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 998765
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.68 E-value=1.9e-07 Score=67.97 Aligned_cols=155 Identities=8% Similarity=-0.142 Sum_probs=118.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-------C--CchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-------G--DLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ 81 (175)
....|...|++++|...|++..+ + ...+|+.+-.+|.+.|++++|...|.+..+. |-... ..+++.
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45567778888888888887642 1 1457899999999999999999999987643 21111 347888
Q ss_pred HHHHHhcC-CCchhHHHHHHHHHHhCC---Cc-c-hHHHHHHHHHHHhcCChHHHHHHHHhccC--CCc-h-------hH
Q 045063 82 VLGACSAL-PAPERGKQVHALMIKGGT---DS-E-PVVKTALMDMYSKYGLLGESVEAFKEIEF--KDV-V-------TW 145 (175)
Q Consensus 82 ll~~~~~~-~~~~~a~~~~~~m~~~~~---~~-~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~-------~~ 145 (175)
+-..+... |++++|...+++..+... .+ . ..++..+...|.+.|++++|...|+...+ |+. . .|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 88889986 999999999999875311 11 1 35788899999999999999999998763 221 1 46
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 146 NALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+..++...|+.++|...|++..+
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777889999999999999988654
No 80
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=1.2e-06 Score=54.31 Aligned_cols=110 Identities=9% Similarity=-0.016 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
...|..+...+.+.|++++|.+.|.++.+.. +.+..++..+..++.+.|++++|...+++..+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4567777888888888888888888887652 2345677788888888888888888888887653 3456678888888
Q ss_pred HHhcCChHHHHHHHHhccC--C-CchhHHHHHHHH
Q 045063 121 YSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSF 152 (175)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~ 152 (175)
|...|++++|...|+...+ | +...+..+-..+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 8888888888888887652 3 333444444333
No 81
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.64 E-value=9.3e-07 Score=67.03 Aligned_cols=130 Identities=8% Similarity=-0.079 Sum_probs=112.5
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-chhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-PERGKQVHALMIKGGTDSEPVVKTALM 118 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~li 118 (175)
+...|+.+-..+.+.|++++|++.|.+..+.. +-+...|+.+-.++.+.|+ +++|...+++.++.. +-+...|..+-
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34568889999999999999999999987652 2345689999999999996 999999999999864 33677999999
Q ss_pred HHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 119 DMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.+|.+.|++++|...|+... .| +...|..+-.++.+.|++++|+..|++.++.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 99999999999999999987 33 7788999999999999999999999998764
No 82
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.63 E-value=3.9e-07 Score=66.98 Aligned_cols=150 Identities=8% Similarity=-0.040 Sum_probs=113.8
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-----CHhhHHHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-----TAYTFTPVLGA 85 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-----~~~t~~~ll~~ 85 (175)
+-.++...|++++|.+++.+... .+...+...+..+.+.|+.+.|.+.+++|.+. .| +..+...+..+
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHH
Confidence 66777888999999999998733 25667889999999999999999999999664 45 35666666666
Q ss_pred Hhc----CCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC------------C-CchhHHHH
Q 045063 86 CSA----LPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF------------K-DVVTWNAL 148 (175)
Q Consensus 86 ~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------~-~~~~~~~l 148 (175)
+.. .++.+.|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+ | |..+.-.+
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 332 34899999999998764 35533444455589999999999999986543 3 56667555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 045063 149 LSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
|......|+ +|.+++.++.+.
T Consensus 262 i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 262 ITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHhCh--HHHHHHHHHHHh
Confidence 655666776 888998888764
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.63 E-value=3.9e-07 Score=68.43 Aligned_cols=153 Identities=7% Similarity=-0.081 Sum_probs=120.5
Q ss_pred hhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CC---CCC-HhhHHHH
Q 045063 18 IADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST--CL---NLT-AYTFTPV 82 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~---~~~-~~t~~~l 82 (175)
..+...|+++.|...|++..+ + ...+|..+-.+|...|+++.|...+.+..+. .. .+. ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 356778999999999998743 2 3456889999999999999999999997653 11 111 3478888
Q ss_pred HHHHhcCCCchhHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC-----CC----chhHHHH
Q 045063 83 LGACSALPAPERGKQVHALMIKG----GTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF-----KD----VVTWNAL 148 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~l 148 (175)
-.++...|++++|...+.+..+. +-.+. ..++..+-..|...|++++|.+.++...+ .+ ..++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 89999999999999999988753 11111 24788899999999999999999988753 22 3468888
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 045063 149 LSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~ 170 (175)
-..|.+.|+.++|...+++..+
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999988654
No 84
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.63 E-value=5.3e-07 Score=67.70 Aligned_cols=155 Identities=8% Similarity=-0.052 Sum_probs=122.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc----CC-CCCHhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST----CL-NLTAYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~-~~~~~t~~~ 81 (175)
+-.+|...|+++.|...|++..+ ++ ..++..+-.+|.+.|++++|.+.|.+..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 66788889999999999998642 11 246888999999999999999999998762 33 233458889
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHh----CCCcchHHHHHHHHHHHhcCC---hHHHHHHHHhccCC--CchhHHHHHHHH
Q 045063 82 VLGACSALPAPERGKQVHALMIKG----GTDSEPVVKTALMDMYSKYGL---LGESVEAFKEIEFK--DVVTWNALLSSF 152 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~--~~~~~~~li~~~ 152 (175)
+-.++.+.|++++|...+++..+. +-+.....+..+-..|...|+ +++|...++....+ ....+..+-..|
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999988753 122223346778888889999 88899999887533 234677888899
Q ss_pred HhcCChHHHHHHHHHHHh
Q 045063 153 LRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~ 170 (175)
.+.|++++|...|++..+
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999998764
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.60 E-value=5.2e-07 Score=62.34 Aligned_cols=152 Identities=8% Similarity=-0.032 Sum_probs=114.8
Q ss_pred hhhcCCCChhHHHHHhhhccC--C-CchhHHH----------------HHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh
Q 045063 18 IADALPKRYVYTHQVFDEISH--G-DLSSLNS----------------QLFSYTRSRNFPATWALFCYMHSTCLNLTAYT 78 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t 78 (175)
..+.+.|+++.|...|++... | +...|.. +-.+|.+.|++++|...|++..+.. +-+...
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 90 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDC 90 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHH
Confidence 345678999999999999764 3 3445666 8899999999999999999987652 234568
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC--hHHHHHHHHhccCCCchh--HHHHHHHHHh
Q 045063 79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL--LGESVEAFKEIEFKDVVT--WNALLSSFLR 154 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~--~~~li~~~~~ 154 (175)
+..+-.++...|++++|...|++..+.. +-+...|..+-..|...|. .+.+...++....++... |...-.++..
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~ 169 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLF 169 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence 8899999999999999999999999853 3356788888888866554 455677777776665443 3334455667
Q ss_pred cCChHHHHHHHHHHHhc
Q 045063 155 HGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~~~ 171 (175)
.|++++|...|++..+.
T Consensus 170 ~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 170 TTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHTHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHh
Confidence 89999999999987653
No 86
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=1.9e-06 Score=53.84 Aligned_cols=117 Identities=15% Similarity=-0.031 Sum_probs=91.0
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+...+..+...+...|++++|...|.+..+.. +.+...+..+-.++...|++++|...+....+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 44567778888888999999999999887652 2356678888888888999999999999888753 335678888888
Q ss_pred HHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCCh
Q 045063 120 MYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLA 158 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~ 158 (175)
.|.+.|++++|...|+... .| +...+..+...+.+.|+.
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999999999988865 33 556777777777777654
No 87
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=3.3e-06 Score=53.04 Aligned_cols=115 Identities=4% Similarity=-0.104 Sum_probs=90.1
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+...|..+...+.+.|++++|...|++..+.. +.+...+..+-.++...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45568888889999999999999999986652 2356688888888899999999999999988753 345678888899
Q ss_pred HHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcC
Q 045063 120 MYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHG 156 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g 156 (175)
+|.+.|++++|.+.|+...+ | +...+..+-..+.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 99999999999999988753 3 4556666666666554
No 88
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.54 E-value=4.2e-07 Score=62.11 Aligned_cols=155 Identities=8% Similarity=-0.049 Sum_probs=105.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCC--------------Hh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLT--------------AY 77 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~--------------~~ 77 (175)
........|+++.+.+.|+.-.. .....+..+-..+.+.|++++|...|.+..+... .|+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 55566677888888888775443 2455678888899999999999999999876421 121 26
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR 154 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~ 154 (175)
.+..+-.++.+.|++++|...++...+.. +.+...+..+..+|...|++++|.+.|+... .| +...+..+-.++..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 78888888999999999999999998863 3466789999999999999999999999875 34 56678888888888
Q ss_pred cCChHHHH-HHHHHHHhc
Q 045063 155 HGLAKEAF-GVFQAMTRE 171 (175)
Q Consensus 155 ~g~~~~a~-~~~~~m~~~ 171 (175)
.++..++. ..|..|...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88777776 556665543
No 89
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=4.6e-06 Score=54.95 Aligned_cols=92 Identities=10% Similarity=-0.068 Sum_probs=56.1
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR 154 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~ 154 (175)
.+..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|.+.|+... .| +...|..+-.+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 45555555666666666666666666542 2345566666666666666666666666654 23 45566666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 045063 155 HGLAKEAFGVFQAMTR 170 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~~ 170 (175)
.|++++|...|++..+
T Consensus 117 lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQ 132 (151)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666544
No 90
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.51 E-value=2.6e-06 Score=63.26 Aligned_cols=146 Identities=7% Similarity=-0.043 Sum_probs=116.3
Q ss_pred CChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--------------HhhHHHHHHHH
Q 045063 24 KRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--------------AYTFTPVLGAC 86 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--------------~~t~~~ll~~~ 86 (175)
++++.|...|+...+ | +...|..+-..|.+.|++++|...|.+..+...... ...|..+-.++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554432 2 466788899999999999999999999876633222 47899999999
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHH-H
Q 045063 87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEA-F 162 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a-~ 162 (175)
.+.|++++|...+++..+.. +.+...|..+-.+|...|++++|...|+... .| +...|..+-..+.+.|+.++| .
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 3467799999999999999999999999876 34 667888899999999999988 4
Q ss_pred HHHHHHHh
Q 045063 163 GVFQAMTR 170 (175)
Q Consensus 163 ~~~~~m~~ 170 (175)
..++.|..
T Consensus 286 ~~~~~~~~ 293 (336)
T 1p5q_A 286 KLYANMFE 293 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56777643
No 91
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.50 E-value=2e-07 Score=70.19 Aligned_cols=155 Identities=12% Similarity=-0.006 Sum_probs=108.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CC-c----hhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCC-CHhhHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GD-L----SSLNSQLFSYTRSRNFPATWALFCYMHST----CLNL-TAYTFTPVL 83 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~-~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~-~~~t~~~ll 83 (175)
+-..+...|++++|...|++..+ |+ . ..|..+..+|...|++++|...|++..+. +-.| ...++..+-
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 44566778899999999888653 32 2 46788888888889999999988887543 2122 234777778
Q ss_pred HHHhcCCCchhHHHHHHHHHHh----CCCc-chHHHHHHHHHHHhcCC-----------------hHHHHHHHHhccC--
Q 045063 84 GACSALPAPERGKQVHALMIKG----GTDS-EPVVKTALMDMYSKYGL-----------------LGESVEAFKEIEF-- 139 (175)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~-- 139 (175)
..+...|++++|...+++..+. +-.+ ....+..+...|...|+ +++|.+.+++..+
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877643 1112 23477778888888888 8888777776531
Q ss_pred -----C--CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 140 -----K--DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 140 -----~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+ ....|..+-..|...|++++|...+++..+
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 233667777777888888888887777643
No 92
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=3.7e-06 Score=52.02 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=82.5
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHHHH
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLSSF 152 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~~~ 152 (175)
...+..+...+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|...++.+.+ .+...|..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4578888889999999999999999998763 34677899999999999999999999998762 3677899999999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 045063 153 LRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~ 171 (175)
...|++++|...|++..+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999998754
No 93
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.48 E-value=3e-06 Score=61.97 Aligned_cols=153 Identities=5% Similarity=-0.083 Sum_probs=115.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc---CCCCC--HhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST---CLNLT--AYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~---~~~~~--~~t~~~ 81 (175)
....|...|+++.|...|.+..+ .+ ..+|+.+..+|.+.|++++|...|.+..+. .-.+. ..++..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45567777888888888877542 11 447888999999999999999999987543 11122 347778
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCC---Cc--chHHHHHHHHHHHhcCChHHHHHHHHhccCC-----C----chhHHH
Q 045063 82 VLGACSALPAPERGKQVHALMIKGGT---DS--EPVVKTALMDMYSKYGLLGESVEAFKEIEFK-----D----VVTWNA 147 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~----~~~~~~ 147 (175)
+-..+.+ |++++|...+++..+... .+ ...++..+...|.+.|++++|.+.|+...+- + ...|..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 8888888 999999999998875311 11 1457888999999999999999999987631 1 125666
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 045063 148 LLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+..++...|+.++|...|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 7777888899999999999865
No 94
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=2e-06 Score=57.43 Aligned_cols=119 Identities=6% Similarity=-0.048 Sum_probs=92.2
Q ss_pred hhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHH-HhcCCCc-
Q 045063 18 IADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGA-CSALPAP- 92 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~-~~~~~~~- 92 (175)
..+...|+++.|...|++... .+...|..+-.+|...|++++|...|.+..+.. +.+...+..+-.+ +.+.|++
T Consensus 18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 345678899999999987642 366788999999999999999999999987652 2345577777777 6788998
Q ss_pred -hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 93 -ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 93 -~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
++|...++...+.. +.+...+..+...|...|++++|...|+...
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999998763 3356788889999999999999999999876
No 95
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=2.3e-06 Score=57.16 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=94.6
Q ss_pred HhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH-HHhcCCh--H
Q 045063 52 TRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM-YSKYGLL--G 128 (175)
Q Consensus 52 ~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~--~ 128 (175)
...|++++|...|.+..+.. +.+...|..+-.++...|++++|...+++..+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 46789999999999987652 3456688899999999999999999999998753 3356788888888 8899998 9
Q ss_pred HHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 129 ESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 129 ~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
+|...++... .| +...|..+...|...|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999876 34 5677888899999999999999999998764
No 96
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=1.1e-05 Score=58.48 Aligned_cols=153 Identities=7% Similarity=-0.062 Sum_probs=113.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CC-------chhHHHHHHHHHhCCCcchHHHHHHHHHhcC---CCCC--HhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GD-------LSSLNSQLFSYTRSRNFPATWALFCYMHSTC---LNLT--AYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~-------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~---~~~~--~~t~~~ 81 (175)
.+..+...|+++.|.+.+.+..+ +. ...+..+...+...|++++|+..|.+..+.. ..+. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 46667788999999998876532 11 1224456667778899999999999987532 1222 348888
Q ss_pred HHHHHhcCCCchhHHHHHHHHHH---hC-CCc--chHHHHHHHHHHHhcCChHHHHHHHHhccC--C---C----chhHH
Q 045063 82 VLGACSALPAPERGKQVHALMIK---GG-TDS--EPVVKTALMDMYSKYGLLGESVEAFKEIEF--K---D----VVTWN 146 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~---~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~---~----~~~~~ 146 (175)
+-..+...|++++|...+++..+ .. -.+ ...++..+...|.+.|++++|.+.++...+ + + ..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 89999999999999999998873 21 111 125889999999999999999999987642 1 1 45688
Q ss_pred HHHHHHHhcCChHHH-HHHHHHH
Q 045063 147 ALLSSFLRHGLAKEA-FGVFQAM 168 (175)
Q Consensus 147 ~li~~~~~~g~~~~a-~~~~~~m 168 (175)
.+-..|.+.|+.++| ...+++-
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Confidence 888899999999999 7767664
No 97
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.45 E-value=2.3e-06 Score=62.13 Aligned_cols=154 Identities=6% Similarity=-0.117 Sum_probs=114.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CC----chhHHHHHHHHHhC-CCcchHHHHHHHHHhcC----CCCC-HhhHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GD----LSSLNSQLFSYTRS-RNFPATWALFCYMHSTC----LNLT-AYTFT 80 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~----~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~~----~~~~-~~t~~ 80 (175)
+-.+|.+.|++++|...|++..+ .+ ..+|+.+-..|.+. |++++|+..|.+..+.. -.+. ..++.
T Consensus 83 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~ 162 (292)
T 1qqe_A 83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 77788899999999999998653 12 45788999999996 99999999999986531 1111 34688
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhCCCcch------HHHHHHHHHHHhcCChHHHHHHHHhccC--CCc------hhHH
Q 045063 81 PVLGACSALPAPERGKQVHALMIKGGTDSEP------VVKTALMDMYSKYGLLGESVEAFKEIEF--KDV------VTWN 146 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~------~~~~ 146 (175)
.+-..+.+.|++++|...+++..+....... ..|..+..+|...|++++|...|+...+ |+. ..+.
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 8889999999999999999999875432222 1577888899999999999999999864 321 1234
Q ss_pred HHHHHHH--hcCChHHHHHHHHHHH
Q 045063 147 ALLSSFL--RHGLAKEAFGVFQAMT 169 (175)
Q Consensus 147 ~li~~~~--~~g~~~~a~~~~~~m~ 169 (175)
.++.+|. ..+++++|+..|+++.
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCC
Confidence 4556554 3467888888876653
No 98
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.44 E-value=3.3e-06 Score=63.35 Aligned_cols=152 Identities=11% Similarity=0.050 Sum_probs=119.8
Q ss_pred hhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CC---CC-CHhhHHHHH
Q 045063 19 ADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST--CL---NL-TAYTFTPVL 83 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~---~~-~~~t~~~ll 83 (175)
.+...|+++.|...|++..+ + ....+..+-.+|...|+++.|...+.+..+. .. .+ ...+++.+-
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34678999999999998643 2 2446888999999999999999999997643 11 12 234788888
Q ss_pred HHHhcCCCchhHHHHHHHHHHh----CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-----C---CchhHHHHHH
Q 045063 84 GACSALPAPERGKQVHALMIKG----GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF-----K---DVVTWNALLS 150 (175)
Q Consensus 84 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~---~~~~~~~li~ 150 (175)
.++...|++++|...+.+..+. +-.+ ...++..+-..|...|++++|.+.++...+ . ...++..+-.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 9999999999999999988752 1111 234788899999999999999999988763 2 3456778888
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 045063 151 SFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~ 170 (175)
.|.+.|+.++|...+++..+
T Consensus 270 ~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998765
No 99
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.43 E-value=1.5e-05 Score=56.48 Aligned_cols=133 Identities=11% Similarity=-0.008 Sum_probs=104.0
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC-C-cchHHH
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LT-AYTFTPVLGACSALPAPERGKQVHALMIKGGT-D-SEPVVK 114 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~-~~~~~~ 114 (175)
.+...+-..-..+.+.|++++|...|.+..+.... |. ...+..+-.++.+.|++++|...++...+... . .....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 35556667778888999999999999999775321 11 45788888899999999999999999998532 1 224567
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHhcc--CCC-chhH-----------------HHHHHHHHhcCChHHHHHHHH
Q 045063 115 TALMDMYSK--------YGLLGESVEAFKEIE--FKD-VVTW-----------------NALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 115 ~~li~~~~~--------~g~~~~a~~~~~~m~--~~~-~~~~-----------------~~li~~~~~~g~~~~a~~~~~ 166 (175)
..+..+|.+ .|++++|...|+... .|+ ...+ ..+-..|.+.|++++|...|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 778888888 999999999999987 343 3344 445777899999999999999
Q ss_pred HHHhc
Q 045063 167 AMTRE 171 (175)
Q Consensus 167 ~m~~~ 171 (175)
+..+.
T Consensus 173 ~~l~~ 177 (261)
T 3qky_A 173 AVFDA 177 (261)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 100
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.43 E-value=3.3e-06 Score=63.32 Aligned_cols=155 Identities=11% Similarity=-0.035 Sum_probs=120.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCCHhhHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLTAYTFTPV 82 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~~~t~~~l 82 (175)
+-.+|...|+++.|.+.|++..+ + ...+++.+-.+|.+.|++++|.+.|.+..+. +-+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 67788899999999999988643 1 2346888899999999999999999998761 222235688888
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhC----CCcchHHHHHHHHHHHhcCC---hHHHHHHHHhccCC--CchhHHHHHHHHH
Q 045063 83 LGACSALPAPERGKQVHALMIKGG----TDSEPVVKTALMDMYSKYGL---LGESVEAFKEIEFK--DVVTWNALLSSFL 153 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~--~~~~~~~li~~~~ 153 (175)
-..+.+.|++++|...+++..+.. -+.....+..+-..|...|+ +.+|...++..... ....+..+-..|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 999999999999999999988642 22234466777777888888 88888888875432 2335677888899
Q ss_pred hcCChHHHHHHHHHHHh
Q 045063 154 RHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 154 ~~g~~~~a~~~~~~m~~ 170 (175)
..|++++|...|++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998754
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.42 E-value=5.8e-06 Score=52.54 Aligned_cols=95 Identities=7% Similarity=-0.023 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 121 (175)
..+...-..|.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|...+++.++.. +.+...|..+-.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 346666677777777777777777765542 2345567777777777777777777777777643 23455777777777
Q ss_pred HhcCChHHHHHHHHhcc
Q 045063 122 SKYGLLGESVEAFKEIE 138 (175)
Q Consensus 122 ~~~g~~~~a~~~~~~m~ 138 (175)
...|++++|.+.|+...
T Consensus 92 ~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 92 VAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77777777777777654
No 102
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.41 E-value=1.4e-06 Score=63.10 Aligned_cols=84 Identities=7% Similarity=-0.089 Sum_probs=38.0
Q ss_pred hcCCCChhHHHHHhhhccC--C-C----chhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHHHHHHHh
Q 045063 20 DALPKRYVYTHQVFDEISH--G-D----LSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTPVLGACS 87 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ll~~~~ 87 (175)
+...|+++.|...|++..+ | + ...|..+...+...|++++|.+.+.+..+. +-.|. ..++..+-..+.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 3444555555555555421 1 1 233445555555555555555555543321 11111 224444444555
Q ss_pred cCCCchhHHHHHHHHH
Q 045063 88 ALPAPERGKQVHALMI 103 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~ 103 (175)
..|++++|...+++..
T Consensus 95 ~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 95 VLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 5555555555555443
No 103
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.40 E-value=6.2e-07 Score=67.53 Aligned_cols=155 Identities=9% Similarity=-0.062 Sum_probs=120.6
Q ss_pred hhhhhcCCCC-----------------hhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHh
Q 045063 16 ISIADALPKR-----------------YVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHS 69 (175)
Q Consensus 16 ll~~~~~~~~-----------------~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 69 (175)
+-..|...|+ ++.|...|++..+ . ....+..+-..|...|++++|...|.+..+
T Consensus 172 l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 251 (411)
T 4a1s_A 172 LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR 251 (411)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6667777888 8888888877532 1 234688889999999999999999999765
Q ss_pred cCC-CCC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--C---cchHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063 70 TCL-NLT----AYTFTPVLGACSALPAPERGKQVHALMIKGGT--D---SEPVVKTALMDMYSKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 70 ~~~-~~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 139 (175)
... .++ ..++..+-..+...|++++|...+++..+... . ....++..+...|...|++++|.+.++....
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 252 IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 311 111 23788888999999999999999998875311 1 1246788899999999999999999998752
Q ss_pred C---------CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 140 K---------DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 140 ~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
- ...+|..+...|.+.|+.++|.+.|++..+
T Consensus 332 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 332 IAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 234788889999999999999999998754
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.39 E-value=1.2e-05 Score=51.07 Aligned_cols=98 Identities=4% Similarity=-0.103 Sum_probs=69.9
Q ss_pred CCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHH
Q 045063 72 LNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNA 147 (175)
Q Consensus 72 ~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~ 147 (175)
+.|+.. .+...-+.+.+.|++++|...|++.++.. +.+...|..+-.+|.+.|++++|...|+... .| +...|..
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 444443 56667777778888888888888777643 3456677777788888888888888777765 23 5567777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 045063 148 LLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+-.+|...|++++|.+.|++..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77778888888888888777654
No 105
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.38 E-value=1.1e-06 Score=65.73 Aligned_cols=155 Identities=8% Similarity=-0.072 Sum_probs=119.4
Q ss_pred hhhhhcCCCC--------------------hhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHH
Q 045063 16 ISIADALPKR--------------------YVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCY 66 (175)
Q Consensus 16 ll~~~~~~~~--------------------~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~ 66 (175)
+-..|...|+ ++.|...|++... + ....+..+-..|...|++++|...|.+
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5566777788 8888888876532 1 244688889999999999999999999
Q ss_pred HHhcC-CCCC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 67 MHSTC-LNLT----AYTFTPVLGACSALPAPERGKQVHALMIKG----GTDSE-PVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 67 m~~~~-~~~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
..+.. -.++ ..++..+-..+...|++++|...+++..+. +-.+. ..++..+...|...|++++|.+.++.
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 86431 1112 237888888999999999999999988743 11111 45788899999999999999999988
Q ss_pred ccC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 137 IEF-----KD----VVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 137 m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+ .+ ..+|..+-..|.+.|++++|...+++..+
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 752 12 45788888999999999999999988653
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.38 E-value=1.5e-06 Score=70.47 Aligned_cols=139 Identities=8% Similarity=-0.075 Sum_probs=111.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-.++.+.|++++|...|++..+ .+...|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++
T Consensus 439 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 439 EVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCh
Confidence 56678889999999999999764 367789999999999999999999999987652 22455788888899999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCC
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGL 157 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~ 157 (175)
++ .+.|++..+.. +.+...|..+-.+|.+.|++++|.+.|+...+- +...|..+..++...|+
T Consensus 518 ~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 518 DE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99 99999998754 335678999999999999999999999998743 34567667677655444
No 107
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.38 E-value=6.5e-07 Score=64.86 Aligned_cols=145 Identities=10% Similarity=-0.049 Sum_probs=112.3
Q ss_pred hhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCC-CHhhHHHHHHHHhcCCC
Q 045063 26 YVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNL-TAYTFTPVLGACSALPA 91 (175)
Q Consensus 26 ~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~-~~~t~~~ll~~~~~~~~ 91 (175)
++.|...+++... + ....+..+...+...|++++|.+.+.+..+. +..+ ...++..+-..+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 8888888877532 1 2446888889999999999999999997643 1111 12378888888999999
Q ss_pred chhHHHHHHHHHHhC----CCcc-hHHHHHHHHHHHhcCChHHHHHHHHhccC-----CC----chhHHHHHHHHHhcCC
Q 045063 92 PERGKQVHALMIKGG----TDSE-PVVKTALMDMYSKYGLLGESVEAFKEIEF-----KD----VVTWNALLSSFLRHGL 157 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~----~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~----~~~~~~li~~~~~~g~ 157 (175)
+++|...+++..+.. -.+. ..++..+...|...|++++|...++...+ .+ ..+|..+-..|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999999887431 1111 45788889999999999999999988652 12 4478888999999999
Q ss_pred hHHHHHHHHHHHh
Q 045063 158 AKEAFGVFQAMTR 170 (175)
Q Consensus 158 ~~~a~~~~~~m~~ 170 (175)
+++|...+++..+
T Consensus 319 ~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 319 HDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999999998765
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.38 E-value=6.4e-06 Score=59.74 Aligned_cols=147 Identities=12% Similarity=0.040 Sum_probs=111.9
Q ss_pred CCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHH
Q 045063 22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHAL 101 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~ 101 (175)
.....+...+.++.....+...+-.+-..+.+.|++++|...|++..+.. +-+...+..+-..+.+.|++++|...+++
T Consensus 98 g~~~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 98 GPQPEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXT 176 (287)
T ss_dssp SCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33445556666666554556667778888899999999999999987652 23455888888999999999999999998
Q ss_pred HHHhCCCcchHHH-HHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 102 MIKGGTDSEPVVK-TALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 102 m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.... .|+.... ......+.+.++.++|.+.++... .| +...+..+-..+...|++++|...|++..+.
T Consensus 177 ~~~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 177 IPLQ--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp SCGG--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cchh--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 8764 3554433 223334667888888888888765 44 6778999999999999999999999998764
No 109
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.37 E-value=6e-06 Score=53.97 Aligned_cols=120 Identities=8% Similarity=-0.041 Sum_probs=96.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-..+...|+++.|...|++... .+...|..+..++.+.|++++|...|.+..+.. +.+...+..+-.++.+.|++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccH
Confidence 56677889999999999998653 367788999999999999999999999987663 33566888888999999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHH--HHHHHHHHhcCChHHHHHHHHhc
Q 045063 93 ERGKQVHALMIKGGTDSEPVVK--TALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m 137 (175)
++|...+++..+... .+...+ -.....+.+.|++++|.+.+...
T Consensus 98 ~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 98 RAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999987532 234444 34444577889999999888764
No 110
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.34 E-value=1.6e-06 Score=64.76 Aligned_cols=155 Identities=10% Similarity=-0.017 Sum_probs=114.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCC-CHhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNL-TAYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~-~~~t~~~ 81 (175)
+-..+...|+++.|...|++... . ....+..+-..|...|++++|...|.+..+. +-.+ ...++..
T Consensus 53 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 132 (406)
T 3sf4_A 53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 132 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 66788889999999999887532 1 2456788888999999999999999887543 1111 1337777
Q ss_pred HHHHHhcCCC--------------------chhHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 82 VLGACSALPA--------------------PERGKQVHALMIKG----GTDSE-PVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 82 ll~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
+-..+...|+ +++|...+.+..+. +-.|. ...+..+...|...|++++|...++.
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7788888888 88888888776532 11222 34778888899999999999988887
Q ss_pred ccC-----CC----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 137 IEF-----KD----VVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 137 m~~-----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+ ++ ..+|..+...|...|++++|...+++..+
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 255 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 255 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 652 12 23788888888999999999998887653
No 111
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.33 E-value=1.4e-05 Score=69.00 Aligned_cols=136 Identities=10% Similarity=0.028 Sum_probs=86.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
+-.++.+.|++++|...|.+. .|...|.-++.++.+.|++++|.+.|...++.. ++....+.+..++++.+++++.
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHH
Confidence 667777778888888887553 566677778888888888888888887654433 2322233466666666665543
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
..+. + .++...|..+-+.|...|++++|..+|... ..|..+..+|++.|+++.|.+.+++
T Consensus 1187 e~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1187 EEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3321 1 234445555666666666666666666653 3666666667777777666666654
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.33 E-value=1.5e-06 Score=56.96 Aligned_cols=118 Identities=7% Similarity=-0.062 Sum_probs=93.3
Q ss_pred HHHhCCCcchHHHHHHHHHhcCCCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH
Q 045063 50 SYTRSRNFPATWALFCYMHSTCLNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG 128 (175)
Q Consensus 50 ~~~~~g~~~~a~~l~~~m~~~~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (175)
.+...|+++.|++.+...... .|+ ...+-.+-..+.+.|++++|...+++..+.. +-+...|..+-.+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 344567888898888886432 233 3467778889999999999999999999853 346779999999999999999
Q ss_pred HHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 045063 129 ESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGV-FQAMTR 170 (175)
Q Consensus 129 ~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~ 170 (175)
+|...|+... .| +...|..+-..|.+.|+.++|.+. +++..+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999876 45 567899999999999999877665 465543
No 113
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=1.2e-05 Score=48.70 Aligned_cols=95 Identities=14% Similarity=-0.071 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCc--chHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDS--EPVVKTALMD 119 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~ 119 (175)
..|..+...+.+.|++++|...|++..+.. +.+...+..+-.++.+.|++++|...+++..+.. +. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555555555555555555554431 1223344444455555555555555555554421 11 2344555555
Q ss_pred HHHhc-CChHHHHHHHHhcc
Q 045063 120 MYSKY-GLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~~~~-g~~~~a~~~~~~m~ 138 (175)
.|.+. |++++|.+.++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 55555 55555555555443
No 114
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.32 E-value=4.4e-06 Score=54.00 Aligned_cols=129 Identities=9% Similarity=-0.062 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-CC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHh----CCCc-ch
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLN-LT----AYTFTPVLGACSALPAPERGKQVHALMIKG----GTDS-EP 111 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 111 (175)
.++..+-..+...|++++|...+.+..+.... ++ ..++..+-..+...|++++|...+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35677778888889999999988887543111 11 136777778888889999999888887642 1111 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhccC-----C----CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 112 VVKTALMDMYSKYGLLGESVEAFKEIEF-----K----DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+..+...|...|++++|.+.++...+ . ....+..+-..|...|+.++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4677888888999999999888887651 1 134577778888899999999999888654
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.31 E-value=7.1e-06 Score=53.61 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=78.4
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+...+..+-..+.+.|++++|...|.+..... +.+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 45567777888889999999999999886652 2355678888888889999999999999988753 335678888889
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 045063 120 MYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (175)
+|...|++++|...|+...
T Consensus 98 ~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.31 E-value=2.4e-05 Score=54.09 Aligned_cols=154 Identities=9% Similarity=-0.080 Sum_probs=120.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHhCC----CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc--
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTRSR----NFPATWALFCYMHSTCLNLTAYTFTPVLGACSA-- 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~~g----~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~-- 88 (175)
|=..|...++++.|...|++..+. +...+..|-..|.. + ++++|...|++..+.| +...+..|-..+..
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~ 99 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQ 99 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 455666789999999999997654 66778888888877 6 8999999999987664 45566677777776
Q ss_pred --CCCchhHHHHHHHHHHhCCC-cchHHHHHHHHHHHh----cCChHHHHHHHHhccC--CCchhHHHHHHHHHhc-C--
Q 045063 89 --LPAPERGKQVHALMIKGGTD-SEPVVKTALMDMYSK----YGLLGESVEAFKEIEF--KDVVTWNALLSSFLRH-G-- 156 (175)
Q Consensus 89 --~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~--~~~~~~~~li~~~~~~-g-- 156 (175)
.+++++|...+++..+.|.. .+...+..|-..|.. .+++++|...|+...+ .+...+..|-..|... |
T Consensus 100 g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 100 AGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp GSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTT
T ss_pred CCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCC
Confidence 78999999999988775532 126788888888888 8899999999998753 4666777777777643 3
Q ss_pred ---ChHHHHHHHHHHHhccc
Q 045063 157 ---LAKEAFGVFQAMTRERV 173 (175)
Q Consensus 157 ---~~~~a~~~~~~m~~~g~ 173 (175)
+.++|..+|++-.+.|.
T Consensus 180 ~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 89999999999877664
No 117
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.31 E-value=1e-05 Score=50.33 Aligned_cols=110 Identities=7% Similarity=-0.060 Sum_probs=91.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-..+...|+++.|...|++... .+...|..+..++.+.|++++|...+.+..+.. +.+...+..+-.++.+.|++
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCCH
Confidence 66778889999999999998753 367788999999999999999999999987752 23466888888999999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL 127 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 127 (175)
++|...++...+.. +.+...+..+..++.+.|++
T Consensus 97 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 97 VEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 99999999998763 33567888888888888775
No 118
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=1.2e-05 Score=48.69 Aligned_cols=95 Identities=11% Similarity=-0.073 Sum_probs=81.6
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C---CchhHHHHHH
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K---DVVTWNALLS 150 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~---~~~~~~~li~ 150 (175)
...+..+-..+.+.|++++|...+++..+.. +.+...|..+...|...|++++|.+.++...+ | +...|..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4467778888899999999999999998764 34667899999999999999999999998762 3 4668888999
Q ss_pred HHHhc-CChHHHHHHHHHHHhc
Q 045063 151 SFLRH-GLAKEAFGVFQAMTRE 171 (175)
Q Consensus 151 ~~~~~-g~~~~a~~~~~~m~~~ 171 (175)
.+.+. |++++|.+.+++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 99999 9999999999998875
No 119
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.28 E-value=2e-05 Score=63.92 Aligned_cols=154 Identities=8% Similarity=-0.034 Sum_probs=118.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-------------CC------------chhHHHHHHHHHhCCCcchHHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-------------GD------------LSSLNSQLFSYTRSRNFPATWALFCYMHST 70 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-------------~~------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 70 (175)
.+...-+.|+++.|+++|+.+.. |+ ...|...+....+.|..+.|.++|.+.++.
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44456678999999999998753 21 235777888777889999999999999776
Q ss_pred -C-CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC------c
Q 045063 71 -C-LNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD------V 142 (175)
Q Consensus 71 -~-~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------~ 142 (175)
+ ..+......+.+.... .++.+.|+.+|+...+. ++-+...|...++.....|+.+.|..+|+...... .
T Consensus 464 ~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~ 541 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLK 541 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHH
T ss_pred cCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 2 2222223333333222 35699999999999986 55567788899999999999999999999987543 3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 143 VTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 143 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
..|..++.--.+.|+.+.+..+.+++.+.
T Consensus 542 ~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 542 MIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57999999888999999999999998764
No 120
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.28 E-value=1.9e-05 Score=49.41 Aligned_cols=96 Identities=10% Similarity=-0.008 Sum_probs=82.3
Q ss_pred CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHH
Q 045063 75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSS 151 (175)
Q Consensus 75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~ 151 (175)
+...+..+-..+.+.|++++|...+++..+.. +.+...+..+...|...|++++|.+.++... .| +...|..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44578888899999999999999999998753 3367789999999999999999999999876 23 56788889999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 045063 152 FLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~ 171 (175)
+.+.|++++|.+.|++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999987653
No 121
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.28 E-value=4.3e-05 Score=56.84 Aligned_cols=155 Identities=5% Similarity=-0.132 Sum_probs=112.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccC----------C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCC--C--CHhhHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH----------G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLN--L--TAYTFT 80 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~--~--~~~t~~ 80 (175)
+-..+...|+++.|...+++... + ....+..+-..+...|++++|...+.+....... + ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 55677889999999999987642 1 1234666778889999999999999997654221 1 234677
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhCCCcch-HHHH-----HHHHHHHhcCChHHHHHHHHhccCCCc-------hhHHH
Q 045063 81 PVLGACSALPAPERGKQVHALMIKGGTDSEP-VVKT-----ALMDMYSKYGLLGESVEAFKEIEFKDV-------VTWNA 147 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~-------~~~~~ 147 (175)
.+-..+...|++++|...+++.....-.++. ..+. ..+..+...|++++|...++....++. ..+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7778888999999999999988753211111 1222 234557899999999999998875421 24567
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 045063 148 LLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+...+...|+.++|...+++...
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 77888899999999999988653
No 122
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.28 E-value=1.4e-05 Score=52.63 Aligned_cols=97 Identities=6% Similarity=-0.005 Sum_probs=82.8
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+...+..+-..+.+.|++++|...|++..... +-+...|..+-.++.+.|++++|...|++..+.. +-+...|..+-.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 55567888889999999999999999987652 2356688899999999999999999999999854 335678999999
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 045063 120 MYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (175)
+|.+.|++++|...|+...
T Consensus 113 ~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999876
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.28 E-value=5.9e-05 Score=54.55 Aligned_cols=127 Identities=9% Similarity=0.055 Sum_probs=97.1
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcC-CCCCHh----hHHHHHHHHhcCCCchhHHHHHHHHHHhCCC-cc----hHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTC-LNLTAY----TFTPVLGACSALPAPERGKQVHALMIKGGTD-SE----PVV 113 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~-~~~~~~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~ 113 (175)
+...+..+...|++++|.+++.+..+.. ..|+.. .+..+...+...+++++|...+.+..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344778889999999999999987642 233321 3334666677788999999999999873222 22 236
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccC------C----CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 114 KTALMDMYSKYGLLGESVEAFKEIEF------K----DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
++.+-..|...|++++|...|+...+ . ...+|..+...|.+.|++++|...+++..+
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 89999999999999999999988762 1 234788889999999999999999988653
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.27 E-value=4.8e-05 Score=52.53 Aligned_cols=137 Identities=7% Similarity=-0.010 Sum_probs=111.6
Q ss_pred HHHHHhhhccC-CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC----CchhHHHHHHHH
Q 045063 28 YTHQVFDEISH-GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP----APERGKQVHALM 102 (175)
Q Consensus 28 ~a~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~----~~~~a~~~~~~m 102 (175)
+|.+.|++..+ .+...+..+-..|...+++++|...|++..+.| +...+..+-..+.. + +.++|...|++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 45666766554 577888889999999999999999999997775 45566677677777 6 899999999998
Q ss_pred HHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccCCC-----chhHHHHHHHHHh----cCChHHHHHHHHHHH
Q 045063 103 IKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEFKD-----VVTWNALLSSFLR----HGLAKEAFGVFQAMT 169 (175)
Q Consensus 103 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~ 169 (175)
.+.| +...+..|-..|.. .+++++|.+.|+...+.+ ...+..|-..|.. .++.++|..+|++-.
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 7754 56677788888877 889999999999988654 4788888888888 789999999999987
Q ss_pred hc
Q 045063 170 RE 171 (175)
Q Consensus 170 ~~ 171 (175)
+.
T Consensus 157 ~~ 158 (212)
T 3rjv_A 157 SL 158 (212)
T ss_dssp HT
T ss_pred Hc
Confidence 65
No 125
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.27 E-value=3.4e-05 Score=48.86 Aligned_cols=98 Identities=12% Similarity=0.032 Sum_probs=79.3
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHH
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALM 118 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li 118 (175)
.+...|..+-..+.+.|++++|...|.+..+.. +.+...|..+-.++.+.|++++|...++...+.. +.+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 456678888888999999999999999876653 2345688888888889999999999999888754 33567888888
Q ss_pred HHHHhcCChHHHHHHHHhcc
Q 045063 119 DMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~ 138 (175)
.+|...|++++|...|+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 99999999999998888765
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.25 E-value=2.7e-05 Score=50.13 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=77.8
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+...+..+-..+.+.|++++|...|.+..... +-+...|..+-.++.+.|++++|...++...+.. +.+...+..+-.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44456667788889999999999999987652 2355678888888899999999999999988764 345667888889
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 045063 120 MYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (175)
+|...|++++|...|+...
T Consensus 95 ~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999998865
No 127
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.24 E-value=1e-05 Score=50.44 Aligned_cols=96 Identities=6% Similarity=-0.014 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCC--Ccc----hHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGT--DSE----PVVKT 115 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~ 115 (175)
..|..+...+.+.|++++|...|.+..+.. +.+...+..+-.++...|++++|...+....+... .++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 346667777777888888888888876552 23455677777777778888888888877775421 111 55677
Q ss_pred HHHHHHHhcCChHHHHHHHHhcc
Q 045063 116 ALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 116 ~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
.+...|.+.|++++|.+.|+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 77778888888888888877765
No 128
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.23 E-value=7.9e-05 Score=57.80 Aligned_cols=13 Identities=8% Similarity=-0.020 Sum_probs=5.2
Q ss_pred CCcchHHHHHHHH
Q 045063 55 RNFPATWALFCYM 67 (175)
Q Consensus 55 g~~~~a~~l~~~m 67 (175)
+++++|...|++.
T Consensus 129 ~~~~~A~~~~~~a 141 (490)
T 2xm6_A 129 VDKAESVKWFRLA 141 (490)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3344444444433
No 129
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.23 E-value=2.2e-06 Score=66.37 Aligned_cols=145 Identities=6% Similarity=-0.059 Sum_probs=110.9
Q ss_pred CChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--------------HhhHHHHHHHH
Q 045063 24 KRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--------------AYTFTPVLGAC 86 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--------------~~t~~~ll~~~ 86 (175)
++++.|...|+...+ .....|..+-..+.+.|++++|...|.+..+....-. ...|..+-.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554432 2455688888999999999999999999876422111 46888999999
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHHHHhcCChHHHHH
Q 045063 87 SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
.+.|++++|...+++.++.. +.+...|..+-.+|...|++++|...|+...+ | +...|..+-..+.+.|+.+++..
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 34677899999999999999999999999763 3 56788888888989998887764
Q ss_pred -HHHHHH
Q 045063 164 -VFQAMT 169 (175)
Q Consensus 164 -~~~~m~ 169 (175)
.++.|.
T Consensus 407 ~~~~~~f 413 (457)
T 1kt0_A 407 RIYANMF 413 (457)
T ss_dssp HHHHHC-
T ss_pred HHHHHHH
Confidence 455553
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.22 E-value=9.9e-06 Score=52.90 Aligned_cols=91 Identities=9% Similarity=-0.110 Sum_probs=49.8
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR 154 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~ 154 (175)
.+..+-..+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|+... .| +...|..+-.+|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 44444555555666666666666555432 2244455555556666666666666665543 22 44455555555666
Q ss_pred cCChHHHHHHHHHHH
Q 045063 155 HGLAKEAFGVFQAMT 169 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~ 169 (175)
.|++++|...|++..
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666555543
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.22 E-value=3e-05 Score=48.63 Aligned_cols=95 Identities=8% Similarity=-0.026 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 121 (175)
..|..+-..+.+.|++++|...|.+..+.. +.+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 346666777888888888888888876652 2345677788888888888888888888887753 23466778888888
Q ss_pred HhcCChHHHHHHHHhcc
Q 045063 122 SKYGLLGESVEAFKEIE 138 (175)
Q Consensus 122 ~~~g~~~~a~~~~~~m~ 138 (175)
...|++++|.+.|+...
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 88888888888887765
No 132
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.22 E-value=4.8e-05 Score=46.36 Aligned_cols=96 Identities=5% Similarity=-0.124 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY 121 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 121 (175)
..+..+...+...|++++|...|.+..... +.+...+..+-.++.+.|++++|...+++..+.. +.+...+..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777778888888888888876542 2345567777777778888888888888877653 23466777788888
Q ss_pred HhcCChHHHHHHHHhccC
Q 045063 122 SKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~ 139 (175)
...|++++|.+.++...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 888888888888877653
No 133
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.21 E-value=4e-05 Score=46.72 Aligned_cols=95 Identities=11% Similarity=-0.053 Sum_probs=81.1
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHH
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSF 152 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~ 152 (175)
...+..+-..+...|++++|...++...+.. +.+...+..+...|.+.|++++|...++... .| +...|..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4567777888889999999999999998753 3467789999999999999999999999876 33 567888899999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 045063 153 LRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~ 171 (175)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999987654
No 134
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.21 E-value=1.6e-05 Score=58.02 Aligned_cols=126 Identities=8% Similarity=-0.029 Sum_probs=97.7
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhC--C-Ccc--hHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTPVLGACSALPAPERGKQVHALMIKGG--T-DSE--PVV 113 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~-~~~--~~~ 113 (175)
|+.....|...|++++|...|.+..+. +-.+. ..+|+.+-.++.+.|++++|...+++..+.- . .+. ..+
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 118 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMA 118 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455577888999999999999987543 21111 3488888999999999999999999877431 1 122 357
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCC-----C----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 114 KTALMDMYSKYGLLGESVEAFKEIEFK-----D----VVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~-----~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+..+-..|.+ |++++|.+.++...+- + ..+|+.+-..|.+.|++++|...|++..+
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888899988 9999999999876521 1 35788889999999999999999998764
No 135
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=4.7e-05 Score=48.18 Aligned_cols=93 Identities=13% Similarity=-0.099 Sum_probs=48.7
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHH
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSF 152 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~ 152 (175)
...+..+-..+.+.|++++|...+....+.. +.+...|..+..+|...|++++|...++... .| +...|..+-.+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445555555555555555555555555432 2234455555555555555555555555543 12 344555555555
Q ss_pred HhcCChHHHHHHHHHHH
Q 045063 153 LRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 153 ~~~g~~~~a~~~~~~m~ 169 (175)
...|++++|...|++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 55555555555555543
No 136
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.20 E-value=0.00011 Score=57.03 Aligned_cols=144 Identities=9% Similarity=0.001 Sum_probs=109.4
Q ss_pred CCChhHHHHHhhhccC-CCchhHHHHHHHHHh----CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc----CCCch
Q 045063 23 PKRYVYTHQVFDEISH-GDLSSLNSQLFSYTR----SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA----LPAPE 93 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~----~~~~~ 93 (175)
.++++.|...|++..+ .+...+..|-..|.. .++.++|...|.+..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 7899999999998754 467778888888888 889999999999987765 44556666666666 67889
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccCC-CchhHHHHHHHHHh----cCChHHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEFK-DVVTWNALLSSFLR----HGLAKEAFGV 164 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~a~~~ 164 (175)
+|...+++..+.| +...+..|-..|.. .+++++|.+.|+...+. +...+..|-..|.. .++.++|..+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 9999998887765 45667777777776 77888888888876544 55667777777766 6788888888
Q ss_pred HHHHHhcc
Q 045063 165 FQAMTRER 172 (175)
Q Consensus 165 ~~~m~~~g 172 (175)
|++-.+.|
T Consensus 210 ~~~a~~~~ 217 (490)
T 2xm6_A 210 YRKSATSG 217 (490)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHCC
Confidence 77765543
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.19 E-value=3.7e-05 Score=50.64 Aligned_cols=97 Identities=12% Similarity=-0.005 Sum_probs=82.4
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+...|..+-..+.+.|++++|...|.+..+.. +-+...|..+-.++.+.|++++|...+++..+.. +.+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45568888899999999999999999987653 2356688889999999999999999999998864 335778999999
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 045063 120 MYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (175)
+|.+.|++++|.+.|+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHH
Confidence 9999999999999999876
No 138
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=5.7e-05 Score=48.20 Aligned_cols=97 Identities=10% Similarity=0.068 Sum_probs=80.6
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHH
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT----AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVK 114 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 114 (175)
.+...+..+...+.+.|++++|...|++..+. .|+ ...+..+-.++.+.|++++|...++...+.. +.+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35667888889999999999999999998664 355 5678888888899999999999999988753 3356788
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcc
Q 045063 115 TALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
..+..+|...|++++|...|+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888899999999999999998865
No 139
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.18 E-value=2.3e-05 Score=61.98 Aligned_cols=121 Identities=7% Similarity=-0.100 Sum_probs=104.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-..+.+.|++++|.+.|++..+ .+...|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+-.++.+.|++
T Consensus 29 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 107 (568)
T 2vsy_A 29 LADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQA 107 (568)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCH
Confidence 66778889999999999999754 357788999999999999999999999987652 23456888999999999999
Q ss_pred hhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc---CChHHHHHHHHhcc
Q 045063 93 ERGKQVHALMIKGGTDSEPVVKTALMDMYSKY---GLLGESVEAFKEIE 138 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 138 (175)
++|.+.+++..+.. +.+...+..+...|... |++++|.+.+++..
T Consensus 108 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 108 EAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999998764 34567889999999999 99999999999876
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.16 E-value=4.6e-05 Score=47.73 Aligned_cols=91 Identities=9% Similarity=-0.095 Sum_probs=48.2
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR 154 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~ 154 (175)
.+..+-..+.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|...++... .| +...|..+-.++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444445555555666665555555432 2234455555555555666666555555543 22 34455555555555
Q ss_pred cCChHHHHHHHHHHH
Q 045063 155 HGLAKEAFGVFQAMT 169 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~ 169 (175)
.|++++|...|++..
T Consensus 85 ~~~~~~A~~~~~~al 99 (126)
T 3upv_A 85 VKEYASALETLDAAR 99 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHH
Confidence 566666555555543
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.13 E-value=1.9e-05 Score=58.60 Aligned_cols=120 Identities=10% Similarity=-0.049 Sum_probs=99.8
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CC----------------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GD----------------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY 77 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~----------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 77 (175)
+-..+.+.|+++.|...|++... |+ ...|..+-.+|.+.|++++|+..|.+..+.. +-+..
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 231 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEK 231 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 55677888999999999998753 33 4789999999999999999999999997763 23566
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHH-HHHHHhc
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGES-VEAFKEI 137 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m 137 (175)
.+..+-.++...|++++|...|++..+.. +.+...+..+..++.+.|+.++| ...+..|
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998853 33567889999999999999988 4455554
No 142
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.13 E-value=5.1e-05 Score=48.82 Aligned_cols=90 Identities=8% Similarity=-0.089 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhc
Q 045063 79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRH 155 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~ 155 (175)
+..+-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|+... .| +...|..+-.+|...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344445555566666666666555432 2244455555556666666666666665544 22 444555555556666
Q ss_pred CChHHHHHHHHHHH
Q 045063 156 GLAKEAFGVFQAMT 169 (175)
Q Consensus 156 g~~~~a~~~~~~m~ 169 (175)
|++++|...|++..
T Consensus 100 g~~~~A~~~~~~al 113 (142)
T 2xcb_A 100 GDLDGAESGFYSAR 113 (142)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666555543
No 143
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=5.3e-05 Score=47.08 Aligned_cols=94 Identities=9% Similarity=0.011 Sum_probs=80.2
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-C-------chhHH
Q 045063 77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-D-------VVTWN 146 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~-------~~~~~ 146 (175)
..+..+-..+...|++++|...+++..+.. +.+...+..+...|...|++++|...++.... | + ...|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 467777888899999999999999998764 34677899999999999999999999998762 2 2 66788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 147 ALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.+...+.+.|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8899999999999999999988764
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.12 E-value=5.2e-05 Score=49.87 Aligned_cols=89 Identities=10% Similarity=-0.030 Sum_probs=64.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-..+.+.|+++.|...|++..+ | +...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.++.+.|++
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCH
Confidence 45566677888888888877642 3 56667777788888888888888888776552 22355777777777788888
Q ss_pred hhHHHHHHHHHHh
Q 045063 93 ERGKQVHALMIKG 105 (175)
Q Consensus 93 ~~a~~~~~~m~~~ 105 (175)
++|...+++..+.
T Consensus 96 ~~A~~~~~~al~~ 108 (164)
T 3sz7_A 96 KGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888877753
No 145
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.09 E-value=4.8e-05 Score=59.23 Aligned_cols=120 Identities=8% Similarity=-0.032 Sum_probs=93.9
Q ss_pred chhhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 14 TCISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
..+-..+.+.|++++|.+.|++..+ | +...|..+-.+|.+.|++++|.+.|++..+.. +-+..++..+-.++.+.|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3356678899999999999998753 3 67789999999999999999999999987762 234568888999999999
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHH--HHhcCChHHHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDM--YSKYGLLGESVEAFK 135 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~ 135 (175)
++++|.+.+++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 89 ~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999998753 2234456666555 888999999999998
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=0.00018 Score=45.80 Aligned_cols=93 Identities=9% Similarity=-0.112 Sum_probs=52.5
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc----hHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHH
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE----PVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNAL 148 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~l 148 (175)
...+..+-..+.+.|++++|...+++..+. .|+ ...|..+...|...|++++|...++... .| +...|..+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 335555555566666666666666665542 233 4455556666666666666666665543 22 34455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 045063 149 LSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~ 170 (175)
-.+|...|++++|...|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666666665543
No 147
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.07 E-value=0.00021 Score=51.57 Aligned_cols=130 Identities=10% Similarity=0.057 Sum_probs=98.4
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-----hhHHHHHHHHhcCCCchhHHHHHHHHHHhCC---Ccc--
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA-----YTFTPVLGACSALPAPERGKQVHALMIKGGT---DSE-- 110 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~-- 110 (175)
...+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+.+..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345667788899999999999999988765322211 2234455566788999999999998875321 111
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhcc-----CCC-----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 111 PVVKTALMDMYSKYGLLGESVEAFKEIE-----FKD-----VVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+|+.+-..|...|++++|...|+... .++ ..+|+.+...|.+.|++++|...+++..+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3488999999999999999999998865 222 25788899999999999999999988653
No 148
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.07 E-value=0.00016 Score=50.18 Aligned_cols=129 Identities=7% Similarity=-0.042 Sum_probs=92.5
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCC-cch-HHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTD-SEP-VVKTALM 118 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~li 118 (175)
.+-.+...+.+.|++++|...|++..+... .|. ...+..+-.++.+.|++++|...+++..+.... +.. ..+-.+-
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344556778899999999999999977532 222 347778889999999999999999999975322 111 1333333
Q ss_pred HHHH------------------hcCChHHHHHHHHhccC--CCc-hhHH-----------------HHHHHHHhcCChHH
Q 045063 119 DMYS------------------KYGLLGESVEAFKEIEF--KDV-VTWN-----------------ALLSSFLRHGLAKE 160 (175)
Q Consensus 119 ~~~~------------------~~g~~~~a~~~~~~m~~--~~~-~~~~-----------------~li~~~~~~g~~~~ 160 (175)
.+|. ..|++++|...|+...+ |+. ..+. .+-..|.+.|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 4443 35789999999999874 332 2332 34456789999999
Q ss_pred HHHHHHHHHhc
Q 045063 161 AFGVFQAMTRE 171 (175)
Q Consensus 161 a~~~~~~m~~~ 171 (175)
|...|+++.+.
T Consensus 166 A~~~~~~~l~~ 176 (225)
T 2yhc_A 166 VVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 149
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.06 E-value=5.8e-05 Score=56.13 Aligned_cols=153 Identities=6% Similarity=-0.095 Sum_probs=112.8
Q ss_pred hhhcCCCChhHHHHHhhhccC--C--Cc----hhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCCH----hhHHHHHH
Q 045063 18 IADALPKRYVYTHQVFDEISH--G--DL----SSLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLTA----YTFTPVLG 84 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~--~--~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~~----~t~~~ll~ 84 (175)
..+...|+++.|...+++... | +. ..++.+-..+...|++++|.+.+.+.....- ..+. .++..+-.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 345678999999999887532 2 22 2466777888899999999999999764311 1111 24566677
Q ss_pred HHhcCCCchhHHHHHHHHHHh----CCC--cc-hHHHHHHHHHHHhcCChHHHHHHHHhccC--C------CchhHHHHH
Q 045063 85 ACSALPAPERGKQVHALMIKG----GTD--SE-PVVKTALMDMYSKYGLLGESVEAFKEIEF--K------DVVTWNALL 149 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~~----~~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~------~~~~~~~li 149 (175)
.+...|++++|...+++..+. +.. |. ...+..+...|...|++++|...++.... + ....|..+-
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 788999999999999988753 221 32 34677788899999999999999987641 1 124577788
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 045063 150 SSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+...|++++|...+++...
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999999988754
No 150
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.05 E-value=0.0001 Score=63.78 Aligned_cols=142 Identities=11% Similarity=0.018 Sum_probs=108.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-------------------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-------------------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHST 70 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-------------------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 70 (175)
+-..+...|.+++|..+|++... .+..+|..+-.++.+.|++++|.+.|.+-
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence 34455566667777666665532 24567888889999999999999999663
Q ss_pred CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHH
Q 045063 71 CLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLS 150 (175)
Q Consensus 71 ~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~ 150 (175)
-|...|.-+..++.+.|+++++.+.+....+.. ++....+.++.+|++.+++++...+. ..++...|..+-.
T Consensus 1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 455678889999999999999999998877643 44444556999999999988755554 4566677778888
Q ss_pred HHHhcCChHHHHHHHHHH
Q 045063 151 SFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m 168 (175)
.|...|++++|..+|...
T Consensus 1204 ~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh
Confidence 899999999999988864
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.05 E-value=6.8e-05 Score=47.47 Aligned_cols=94 Identities=9% Similarity=-0.020 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC--CCcc----hHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGG--TDSE----PVVKTA 116 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~----~~~~~~ 116 (175)
.+..+-..+.+.|++++|++.|.+..+.. +-+...|..+-.++.+.|++++|...+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566677777777777777777765542 1234466677777777777777777777766421 1111 124555
Q ss_pred HHHHHHhcCChHHHHHHHHhc
Q 045063 117 LMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m 137 (175)
+-.+|...|++++|.+.|+..
T Consensus 89 lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 666667777777777776654
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=1.8e-05 Score=61.56 Aligned_cols=118 Identities=7% Similarity=-0.066 Sum_probs=92.2
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC
Q 045063 47 QLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL 126 (175)
Q Consensus 47 li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 126 (175)
+-..+.+.|++++|.+.|++..+. -+-+..+|..+-.++.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 334566789999999999998765 22346789999999999999999999999998853 3356789999999999999
Q ss_pred hHHHHHHHHhcc--CC-CchhHHHHHHH--HHhcCChHHHHHHHH
Q 045063 127 LGESVEAFKEIE--FK-DVVTWNALLSS--FLRHGLAKEAFGVFQ 166 (175)
Q Consensus 127 ~~~a~~~~~~m~--~~-~~~~~~~li~~--~~~~g~~~~a~~~~~ 166 (175)
+++|.+.|++.. .| +...+..+-.+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999876 34 45566666655 888899999999887
No 153
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.04 E-value=6.6e-05 Score=51.60 Aligned_cols=108 Identities=7% Similarity=-0.032 Sum_probs=86.7
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhcCCCCCH-hhHHH----------------HHHHHhcCCCchhHHHHHHHHHHhCCCc
Q 045063 47 QLFSYTRSRNFPATWALFCYMHSTCLNLTA-YTFTP----------------VLGACSALPAPERGKQVHALMIKGGTDS 109 (175)
Q Consensus 47 li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-~t~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 109 (175)
....+.+.|++++|...|.+..+. .|+. ..|.. +-.++.+.|++++|...+++..+.. +-
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~ 86 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PN 86 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 345677899999999999998664 2433 35555 7888899999999999999999864 34
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCC
Q 045063 110 EPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGL 157 (175)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~ 157 (175)
+...|..+-..|...|++++|...|+... .| +...|..+-..|...|+
T Consensus 87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 67799999999999999999999999986 44 56678888877766553
No 154
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.00 E-value=0.00012 Score=48.69 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=89.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHH-HHhCCCcchHHHHHHHHHhcCCCC-CHhhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFS-YTRSRNFPATWALFCYMHSTCLNL-TAYTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~-~~~~g~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~~~~~~~~ 91 (175)
+-.++.+.|++++|...|++... |+...+..+... +.+.+...+|...|++..+. .| +...+..+-.++.+.|+
T Consensus 46 la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 46 KADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGR 123 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 67788899999999999999864 333222222111 22333445678888887654 34 45688888999999999
Q ss_pred chhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 92 PERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
+++|...+++..+....+ +...+..+...|...|+.++|...|+.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 999999999998754332 356899999999999999999988875
No 155
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=2.3e-05 Score=48.76 Aligned_cols=85 Identities=12% Similarity=0.005 Sum_probs=63.4
Q ss_pred hCCCcchHHHHHHHHHhcCC-CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHH
Q 045063 53 RSRNFPATWALFCYMHSTCL-NLT-AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGES 130 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~-~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 130 (175)
..|++++|...|.+..+.+. .|+ ...+..+-.++.+.|++++|...+++..+.. +-+...+..+..+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 46888999999999877542 133 3478888888889999999999999988764 23466888888899999999999
Q ss_pred HHHHHhcc
Q 045063 131 VEAFKEIE 138 (175)
Q Consensus 131 ~~~~~~m~ 138 (175)
...++...
T Consensus 81 ~~~~~~al 88 (117)
T 3k9i_A 81 VELLLKII 88 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888765
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.99 E-value=8.6e-05 Score=46.98 Aligned_cols=93 Identities=11% Similarity=-0.031 Sum_probs=77.0
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-C-------chhHH
Q 045063 77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-D-------VVTWN 146 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~-------~~~~~ 146 (175)
.++..+-+.+.+.|++++|...|++.++.. +.+...|..+-.+|.+.|++++|.+.++...+ | + ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 367778889999999999999999998753 34567899999999999999999999988752 2 1 13577
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 045063 147 ALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.+-.++...|++++|.+.|++-..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777888899999999999988654
No 157
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.99 E-value=8.4e-05 Score=46.64 Aligned_cols=93 Identities=6% Similarity=-0.126 Sum_probs=51.7
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK 123 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 123 (175)
+-.+-..+.+.|++++|...|++..+.. +-+...|..+-.++.+.|++++|...+++..+.. +-+...+..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344455556666666666666654431 1233455555556666666666666666665532 1234455566666666
Q ss_pred cCChHHHHHHHHhcc
Q 045063 124 YGLLGESVEAFKEIE 138 (175)
Q Consensus 124 ~g~~~~a~~~~~~m~ 138 (175)
.|++++|...++...
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666665543
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.98 E-value=6.2e-05 Score=54.60 Aligned_cols=132 Identities=8% Similarity=-0.049 Sum_probs=94.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPA 91 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~ 91 (175)
...++...|++++|.++|+.+.. |+....-.+-..+.+.+++++|+..|+...+.. .|. ...+..+-.++.+.|+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC
Confidence 44567788999999999998864 432244445557788999999999998553332 121 2367777888899999
Q ss_pred chhHHHHHHHHHHhCCCc--chHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHH
Q 045063 92 PERGKQVHALMIKGGTDS--EPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNAL 148 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~l 148 (175)
+++|...|++.......| ....+...-.++.+.|+.++|..+|+++. .|+...+..|
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999887433224 34467777888889999999999999886 4443334333
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.97 E-value=8.9e-05 Score=46.53 Aligned_cols=93 Identities=12% Similarity=-0.042 Sum_probs=78.8
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHh
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLR 154 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~ 154 (175)
.+..+-..+.+.|++++|...+++..+.. +.+...|..+-.++...|++++|...|+... .| +...|..+-.+|.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45556677889999999999999999853 3467789999999999999999999999876 34 56788899999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 045063 155 HGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~~~ 171 (175)
.|++++|...|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998753
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.95 E-value=0.00014 Score=55.02 Aligned_cols=152 Identities=9% Similarity=-0.121 Sum_probs=110.9
Q ss_pred hhhcCCCChhHHHHHhhhccC--C---Cc---------------hhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH
Q 045063 18 IADALPKRYVYTHQVFDEISH--G---DL---------------SSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA 76 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~--~---~~---------------~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~ 76 (175)
..+.+.|++++|.+.|.++.+ + +. ..+..+...|.+.|++++|.+.+.+.... +-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345678999999999998742 1 11 13678899999999999999999997653 111222
Q ss_pred h----hHHHHHHHHhcCCCchhHHHHHHHHHHh----CCCcc-hHHHHHHHHHHHhcCChHHHHHHHHhcc----C----
Q 045063 77 Y----TFTPVLGACSALPAPERGKQVHALMIKG----GTDSE-PVVKTALMDMYSKYGLLGESVEAFKEIE----F---- 139 (175)
Q Consensus 77 ~----t~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~----~---- 139 (175)
. +.+.+-..+...|+.+.+..++...... +..+. ..++..+...|...|++++|...++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 2333333444568889999888887632 22222 4578899999999999999999988764 1
Q ss_pred C-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 140 K-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 140 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+ ....|..++..|...|++++|..++++..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1 23478889999999999999999988764
No 161
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=6.8e-05 Score=58.63 Aligned_cols=122 Identities=8% Similarity=-0.058 Sum_probs=94.3
Q ss_pred HHHhCCCcchHHHHHHHHHhc---CCC---CC-HhhHHHHHHHHhcCCCchhHHHHHHHHHHh-----C-CCcch-HHHH
Q 045063 50 SYTRSRNFPATWALFCYMHST---CLN---LT-AYTFTPVLGACSALPAPERGKQVHALMIKG-----G-TDSEP-VVKT 115 (175)
Q Consensus 50 ~~~~~g~~~~a~~l~~~m~~~---~~~---~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~-~~~~ 115 (175)
.+...|++++|..++++.++. -+- |+ ..+++.|...|...|++++|..++++...- | -.|++ .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455789999999999987643 122 22 348999999999999999999999987732 2 24444 4889
Q ss_pred HHHHHHHhcCChHHHHHHHHhcc-------CCC----chhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 116 ALMDMYSKYGLLGESVEAFKEIE-------FKD----VVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 116 ~li~~~~~~g~~~~a~~~~~~m~-------~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.|...|...|++++|..++++.. .|| ..+.+.+-.++...|..+.|+.+++++.++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888765 232 234667777888889999999999998763
No 162
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.92 E-value=0.00033 Score=43.64 Aligned_cols=93 Identities=9% Similarity=-0.055 Sum_probs=71.5
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc---hHHHHHHHH
Q 045063 45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE---PVVKTALMD 119 (175)
Q Consensus 45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~ 119 (175)
-.+-..+.+.|++++|.+.|.+..+...... ...+..+-.++.+.|++++|...++...+... .+ ...+..+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP-THDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC-CCcccHHHHHHHHH
Confidence 3456677889999999999999876532111 13677777888899999999999999887532 22 456778888
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 045063 120 MYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (175)
+|.+.|++++|...|+...
T Consensus 85 ~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 8999999999999998876
No 163
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.91 E-value=0.00032 Score=43.68 Aligned_cols=89 Identities=16% Similarity=0.003 Sum_probs=60.2
Q ss_pred hhhhcCCCChhHHHHHhhhccC--CCc----hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhc
Q 045063 17 SIADALPKRYVYTHQVFDEISH--GDL----SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSA 88 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~--~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~ 88 (175)
-..+.+.|+++.|...|++... |+. ..+..+-.++.+.|++++|...|.+..+...... ...+..+-.++.+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 3455667888888888877643 332 3566677777788888888888888765422111 3456666677777
Q ss_pred CCCchhHHHHHHHHHHh
Q 045063 89 LPAPERGKQVHALMIKG 105 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~ 105 (175)
.|++++|...++...+.
T Consensus 89 ~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 89 EGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888877764
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.89 E-value=3.1e-05 Score=48.13 Aligned_cols=83 Identities=6% Similarity=-0.123 Sum_probs=56.6
Q ss_pred CCCChhHHHHHhhhccCC------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 22 LPKRYVYTHQVFDEISHG------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
..|++++|...|++..+- +...|..+-.+|.+.|++++|...|++..+... -+...+..+-.++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 457778888888776432 345577777888888888888888888766522 2345677777778888888888
Q ss_pred HHHHHHHHHh
Q 045063 96 KQVHALMIKG 105 (175)
Q Consensus 96 ~~~~~~m~~~ 105 (175)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888877754
No 165
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.88 E-value=2.4e-05 Score=52.83 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=94.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCC--CHhhHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---------GDLSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNL--TAYTFT 80 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~--~~~t~~ 80 (175)
+-..+...|+++.|...|++..+ .....+..+-..+...|++++|.+.|.+..+. +-.| ....+.
T Consensus 32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 66778889999999999998653 13456888889999999999999999997643 2122 133677
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHh---CCCcc--hHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 81 PVLGACSALPAPERGKQVHALMIKG---GTDSE--PVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
.+-..+...|++++|...+++..+. .-.+. ..++..+...|...|++++|.+.+++..
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7888888999999999999988742 11122 2356788899999999999998887643
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.88 E-value=0.00037 Score=50.20 Aligned_cols=97 Identities=12% Similarity=0.038 Sum_probs=76.7
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
+...+..+-..+.+.|++++|...|.+..+.. +-+...|..+-.++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556777788889999999999999887652 2256678888888889999999999998887642 234668888888
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 045063 120 MYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (175)
+|...|++++|...|+...
T Consensus 81 ~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 9999999999999888765
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.86 E-value=8.3e-05 Score=50.48 Aligned_cols=120 Identities=8% Similarity=-0.098 Sum_probs=91.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC---CCc----------------hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH---GDL----------------SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA 76 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~---~~~----------------~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~ 76 (175)
+-..+.+.|+++.|...|++... .+. ..|..+-.+|.+.|++++|...+.+..+. -+.+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccH
Confidence 45567789999999999998753 222 67888999999999999999999998776 23456
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHH-HHHHhc
Q 045063 77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESV-EAFKEI 137 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m 137 (175)
..+..+-.++...|++++|...+++..+.. +-+...+..+..++...++.+++. ..|..+
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888899999999999999999998753 335668888888888887777765 444433
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.85 E-value=6.8e-05 Score=48.20 Aligned_cols=122 Identities=11% Similarity=-0.005 Sum_probs=93.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CC----chhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GD----LSSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ 81 (175)
+-..+...|+++.|...|++..+ ++ ...+..+-..+...|++++|.+.|++..+. +-.+. ...+..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 55677789999999999998653 12 246888999999999999999999997643 11111 346777
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHh----CCCc-chHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 82 VLGACSALPAPERGKQVHALMIKG----GTDS-EPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
+-.++...|++++|...+++..+. +-.+ ....+..+...|...|++++|.+.+++.
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888889999999999999888743 2111 1346788889999999999999988764
No 169
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.84 E-value=0.00017 Score=58.56 Aligned_cols=151 Identities=7% Similarity=-0.057 Sum_probs=109.1
Q ss_pred cCCCChhHHH-HHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC---------CCC------------
Q 045063 21 ALPKRYVYTH-QVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL---------NLT------------ 75 (175)
Q Consensus 21 ~~~~~~~~a~-~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~---------~~~------------ 75 (175)
-+.|+.+.|. ++|+.... | +...|-..+....+.|+++.|.++|+....... .|+
T Consensus 354 ~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 354 GEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 3457777886 88887643 3 555677788888889999999999999876410 132
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhc-CChHHHHHHHHhccC---CCchhHHHHHHH
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKY-GLLGESVEAFKEIEF---KDVVTWNALLSS 151 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~---~~~~~~~~li~~ 151 (175)
...|...++...+.|..+.|+++|....+.........|...+..-.+. ++.+.|..+|+...+ .+...|...+.-
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 2368888888888899999999999998751112233443333333344 458999999998763 366678888888
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 045063 152 FLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~ 171 (175)
....|+.+.|..+|+.....
T Consensus 514 e~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTT
T ss_pred HHhCCCHHHHHHHHHHHHHh
Confidence 88899999999999987654
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.82 E-value=0.00023 Score=52.82 Aligned_cols=128 Identities=6% Similarity=0.039 Sum_probs=79.9
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh------------------hHHHHHHHHhcCCCchhHHHHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY------------------TFTPVLGACSALPAPERGKQVHALM 102 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~m 102 (175)
...+..+-..+.+.|++++|...|.+..+. .|+.. .|..+-.++.+.|++++|...+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445777788888999999999999997654 23332 7888888999999999999999999
Q ss_pred HHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--C-CchhHHHHHHH-HHhcCChHHHHHHHHHHHhc
Q 045063 103 IKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--K-DVVTWNALLSS-FLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 103 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~ 171 (175)
.+.. +.+...|..+-.+|...|++++|...|+...+ | +...+..+-.. ....+..+++...|+.|...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8753 34677999999999999999999999999863 3 44555555544 33456677888888887643
No 171
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.80 E-value=0.00012 Score=55.90 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=29.6
Q ss_pred hhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHh
Q 045063 19 ADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHS 69 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 69 (175)
.+...+++++|.+.+++... .+...+..+-..|.+.|++++|...|.+..+
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 275 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 34455667777777776532 3455567777777777777777777776654
No 172
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.76 E-value=0.00021 Score=51.77 Aligned_cols=123 Identities=9% Similarity=-0.135 Sum_probs=93.1
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc--hHHHHHHHHHHHh
Q 045063 46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE--PVVKTALMDMYSK 123 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~ 123 (175)
.+...+...|++++|.++|......+ |+....-.+-..+.+.+++++|...++...+.. .|. ...+-.+-.++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 45677888999999999999986543 544455555557889999999999998543321 121 2367777788999
Q ss_pred cCChHHHHHHHHhccC----C--CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 124 YGLLGESVEAFKEIEF----K--DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 124 ~g~~~~a~~~~~~m~~----~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
.|++++|...|++... | ....+...-.++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999999998852 2 1235566677788999999999999998764
No 173
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.74 E-value=4.7e-05 Score=46.22 Aligned_cols=92 Identities=11% Similarity=-0.029 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-------hHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE-------PVVK 114 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~ 114 (175)
..|..+-..+.+.|++++|.+.|.+..+.. +.+...+..+-.++.+.|++++|...+++..+. .|+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHHH
Confidence 345555666666677777777776665441 223445666666666666666666666666542 233 3344
Q ss_pred HHHHHHHHhcCChHHHHHHHHh
Q 045063 115 TALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~ 136 (175)
..+-.++...|+++.|.+.++.
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 4444555555555555444443
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.71 E-value=0.00055 Score=44.73 Aligned_cols=97 Identities=6% Similarity=-0.011 Sum_probs=73.7
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhc--------CC--------CCC-HhhHHHHHHHHhcCCCchhHHHHHHHHH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHST--------CL--------NLT-AYTFTPVLGACSALPAPERGKQVHALMI 103 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------~~--------~~~-~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 103 (175)
...+...-..+.+.|++++|...|.+.... .. .|. ...|..+-.++.+.|++++|...++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345777778889999999999999997654 00 122 2467777788888888888888888888
Q ss_pred HhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 104 KGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 104 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+.. +.+...|..+-.+|...|++++|...|+...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 753 3456688888888888888888888888765
No 175
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.70 E-value=0.00094 Score=51.00 Aligned_cols=149 Identities=9% Similarity=-0.062 Sum_probs=79.4
Q ss_pred cCCCChhHHHHHhhhccC--C-CchhHHHHHHH---HHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh----cCC
Q 045063 21 ALPKRYVYTHQVFDEISH--G-DLSSLNSQLFS---YTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACS----ALP 90 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~----~~~ 90 (175)
...++++.|...|++..+ | +...+..+..+ +...++.++|++.|++..+... .+..++..+-..+. ..+
T Consensus 149 ~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC----
T ss_pred HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhh
Confidence 345677888888887642 3 33333333333 3345666667776666544321 12223333333332 234
Q ss_pred CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC----------------------------
Q 045063 91 APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK---------------------------- 140 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~---------------------------- 140 (175)
+.++|.+.+++..... +.+...+..+...|.+.|++++|...++... .|
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~ 306 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 5566666666655432 2344456666666666666666665555432 11
Q ss_pred --------------------------CchhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045063 141 --------------------------DVVTWNALLSSFLRHGLAKEAFGVFQAMTRE 171 (175)
Q Consensus 141 --------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (175)
+...|..+-..|...|++++|.+.|++..+.
T Consensus 307 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 2334555666777788888888888776543
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00034 Score=52.62 Aligned_cols=121 Identities=8% Similarity=-0.027 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhc--------------CCCC-CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHST--------------CLNL-TAYTFTPVLGACSALPAPERGKQVHALMIKGG 106 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~--------------~~~~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 106 (175)
..|..+-..+.+.|++++|.+.|.+..+. ...| +...|..+-.++.+.|++++|...+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 34778888999999999999999998751 1223 34578888899999999999999999998743
Q ss_pred CCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHH
Q 045063 107 TDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 107 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
+.+...|..+-.+|.+.|++++|.+.|+... .| +...+..+-..+.+.++.+++..
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356788999999999999999999999876 34 55677777777777777766654
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.68 E-value=0.00014 Score=56.92 Aligned_cols=121 Identities=8% Similarity=-0.076 Sum_probs=95.1
Q ss_pred hhcCCCChhHHHHHhhhccC-------C----CchhHHHHHHHHHhCCCcchHHHHHHHHHhc-----C-CCCCH-hhHH
Q 045063 19 ADALPKRYVYTHQVFDEISH-------G----DLSSLNSQLFSYTRSRNFPATWALFCYMHST-----C-LNLTA-YTFT 80 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~-----~-~~~~~-~t~~ 80 (175)
.+...|++++|..++++..+ + -..+++.|...|...|++++|..++.+.+.- | -.|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35688999999999987642 1 2446999999999999999999999997642 2 22443 4899
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHh-----CC-Ccch-HHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063 81 PVLGACSALPAPERGKQVHALMIKG-----GT-DSEP-VVKTALMDMYSKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 139 (175)
.|-..+...|++++|..++++...- |- .|++ .+.+.+-.++...|.+++|+.++..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987732 32 3443 3667788899999999999999998863
No 178
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.67 E-value=0.0082 Score=44.00 Aligned_cols=146 Identities=6% Similarity=-0.053 Sum_probs=116.8
Q ss_pred CCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcc--hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC------
Q 045063 23 PKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFP--ATWALFCYMHSTCLNLTAYTFTPVLGACSALPA------ 91 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~------ 91 (175)
.++++++..+++++.+ ++..+|+.--.++.+.|+++ ++++.++++.+... -|...|+.-...+.+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhh
Confidence 3789999999998863 58888988888888889988 99999999987643 466688777777777766
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH-HHHHHHhccC------CCchhHHHHHHHHHhcCChHHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE-SVEAFKEIEF------KDVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
++++.+.+...++.. +-|...|+-+-..+.+.|.... +..+.....+ ++...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 788888888888764 4577899998888888888555 5556665442 3667889999999999999999999
Q ss_pred HHHHHh
Q 045063 165 FQAMTR 170 (175)
Q Consensus 165 ~~~m~~ 170 (175)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 179
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.64 E-value=0.00067 Score=48.84 Aligned_cols=89 Identities=3% Similarity=-0.140 Sum_probs=75.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
+-..+.+.|++++|...|++... | +...|..+-.+|.+.|++++|...+.+..+.. +-+...+..+-.++.+.|++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 45677789999999999998753 4 67789999999999999999999999986542 23456888889999999999
Q ss_pred hhHHHHHHHHHHh
Q 045063 93 ERGKQVHALMIKG 105 (175)
Q Consensus 93 ~~a~~~~~~m~~~ 105 (175)
++|...++...+.
T Consensus 89 ~~A~~~~~~al~l 101 (281)
T 2c2l_A 89 DEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.63 E-value=0.00033 Score=54.12 Aligned_cols=121 Identities=8% Similarity=-0.010 Sum_probs=96.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--C-C---------------chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--G-D---------------LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY 77 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--~-~---------------~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~ 77 (175)
+-..+.+.|+++.|...|++..+ | + ...|..+-.+|.+.|++++|+..|.+..+.. +-+..
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 352 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK 352 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHH
Confidence 45667889999999999998753 3 2 4789999999999999999999999987763 23566
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHH-HHHhcc
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVE-AFKEIE 138 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~-~~~~m~ 138 (175)
.|..+-.++.+.|++++|...|++..+.. +-+...+..+..++.+.|+.+++.+ .+..|-
T Consensus 353 a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 353 GLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998742 2345688999999999999888764 445443
No 181
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.60 E-value=0.002 Score=49.66 Aligned_cols=148 Identities=10% Similarity=0.011 Sum_probs=85.0
Q ss_pred hhhhhcCCC---ChhHHHHHhhhccCC---CchhHHHHHHHHHhC----CCcchHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 045063 16 ISIADALPK---RYVYTHQVFDEISHG---DLSSLNSQLFSYTRS----RNFPATWALFCYMHSTCLNLTAYTFTPVLGA 85 (175)
Q Consensus 16 ll~~~~~~~---~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~----g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~ 85 (175)
|-..|.+.| +.++|.+.|++..+. +...+..+-..|... +++++|.+.|++.. . -+...+..+-..
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQL 257 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHH
Confidence 333444455 666666666665431 222234455555443 56667777776664 2 222233333333
Q ss_pred -H--hcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC-----ChHHHHHHHHhccCC-CchhHHHHHHHHHh--
Q 045063 86 -C--SALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG-----LLGESVEAFKEIEFK-DVVTWNALLSSFLR-- 154 (175)
Q Consensus 86 -~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~-~~~~~~~li~~~~~-- 154 (175)
+ ...++.++|...|++..+.| +...+..|-..|. .| ++++|.+.|+... + +...+..|-..|..
T Consensus 258 ~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~ 332 (452)
T 3e4b_A 258 LYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGY 332 (452)
T ss_dssp HHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTT
T ss_pred HHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCC
Confidence 2 34667777777777776655 4555556666665 44 7777877777777 5 44455555555544
Q ss_pred --cCChHHHHHHHHHHHhcc
Q 045063 155 --HGLAKEAFGVFQAMTRER 172 (175)
Q Consensus 155 --~g~~~~a~~~~~~m~~~g 172 (175)
..+.++|..+|++-.+.|
T Consensus 333 g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 333 LGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp TSSCCHHHHHHHHHHHHTTT
T ss_pred CCCcCHHHHHHHHHHHHhhC
Confidence 237778888877766655
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.57 E-value=0.0004 Score=52.27 Aligned_cols=115 Identities=5% Similarity=-0.052 Sum_probs=93.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-------------------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-------------------GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA 76 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-------------------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~ 76 (175)
+-..+.+.|+++.|.+.|++..+ .+...|..+-.+|.+.|++++|++.+++..+.. +-+.
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~ 307 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT 307 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhH
Confidence 55677889999999999998653 145678999999999999999999999987652 2345
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHH
Q 045063 77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVE 132 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 132 (175)
..+..+-.++.+.|++++|...+++..+.. +.+...+..+...+.+.++.+++.+
T Consensus 308 ~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888899999999999999999998753 2356678888888888888877754
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00099 Score=50.28 Aligned_cols=155 Identities=6% Similarity=-0.192 Sum_probs=113.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CCc----hhHHHHHHHHHhCCCcchHHHHHHHHHhc----CCCCC-HhhHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GDL----SSLNSQLFSYTRSRNFPATWALFCYMHST----CLNLT-AYTFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~a~~l~~~m~~~----~~~~~-~~t~~~ 81 (175)
|...|.+.|++++|.+.+.++.. ++. ...+.+-..+...|+.+.|..++.+.... +..+. ..++..
T Consensus 61 l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 61 LGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 77889999999999999988753 111 12333334444568999999999887542 33333 347788
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHh--CC--Cc-chHHHHHHHHHHHhcCChHHHHHHHHhccC-----CC-----chhHH
Q 045063 82 VLGACSALPAPERGKQVHALMIKG--GT--DS-EPVVKTALMDMYSKYGLLGESVEAFKEIEF-----KD-----VVTWN 146 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-----~~~~~ 146 (175)
+-..+...|++++|..+++..... +. .+ ....+..++..|...|++++|...++.... ++ ...|.
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 220 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDL 220 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 889999999999999999988753 11 22 235889999999999999999999887541 22 23566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 045063 147 ALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.+...+...|+++.|...|.+..+
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 677777888999999888877643
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.50 E-value=0.0013 Score=40.31 Aligned_cols=79 Identities=8% Similarity=-0.162 Sum_probs=62.1
Q ss_pred chHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 58 PATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 58 ~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
++|+..|.+..+.. +-+...+..+-..+.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|+..
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56778888876542 2345678888888899999999999999988753 334668888889999999999999988876
Q ss_pred c
Q 045063 138 E 138 (175)
Q Consensus 138 ~ 138 (175)
.
T Consensus 80 l 80 (115)
T 2kat_A 80 L 80 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0012 Score=43.06 Aligned_cols=87 Identities=7% Similarity=-0.027 Sum_probs=63.3
Q ss_pred hhhcCCCChhHHHHHhhhccCC---------------------CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH
Q 045063 18 IADALPKRYVYTHQVFDEISHG---------------------DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA 76 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~~---------------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~ 76 (175)
..+.+.|+++.|...|.+...- +...|..+-.+|.+.|++++|+..+.+..+.. +-+.
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~ 97 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNE 97 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccch
Confidence 4566778888888888775321 23467777888888888888888888876652 2345
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045063 77 YTFTPVLGACSALPAPERGKQVHALMIKG 105 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 105 (175)
..|..+-.++...|++++|...+....+.
T Consensus 98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 98 KALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 57777888888888888888888887764
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=7.8e-05 Score=45.23 Aligned_cols=92 Identities=8% Similarity=-0.128 Sum_probs=70.3
Q ss_pred CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC--CC-------chhH
Q 045063 75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF--KD-------VVTW 145 (175)
Q Consensus 75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-------~~~~ 145 (175)
+...+..+-..+.+.|++++|...+++..+.. +.+...|..+-.+|.+.|++++|.+.++...+ |+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 45577788888999999999999999998763 34677899999999999999999999998763 43 3345
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 045063 146 NALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~ 167 (175)
..+-.++...|+.+.|...+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 5555666666666666554443
No 187
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.47 E-value=0.0013 Score=50.61 Aligned_cols=151 Identities=9% Similarity=0.016 Sum_probs=63.9
Q ss_pred hhhhhcCCCCh---hHHHHHhhhccCCCchhHHHHHHHHHhCC-----CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHh
Q 045063 16 ISIADALPKRY---VYTHQVFDEISHGDLSSLNSQLFSYTRSR-----NFPATWALFCYMHSTCLNLTAYTFTPVLGACS 87 (175)
Q Consensus 16 ll~~~~~~~~~---~~a~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~ 87 (175)
|=..|...|+. ++|...|++..+.+...+..+-..+...| +.++|...|++..+.|... .+..|-..+.
T Consensus 41 Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~ 117 (452)
T 3e4b_A 41 LADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYL 117 (452)
T ss_dssp CC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHH
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHH
Confidence 33444456666 77777777766555566666666455544 5667888887776654322 3444444444
Q ss_pred cCCCch---hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh----HHHHHHHHhccCCCchhHHHHHHHHHhcC---C
Q 045063 88 ALPAPE---RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL----GESVEAFKEIEFKDVVTWNALLSSFLRHG---L 157 (175)
Q Consensus 88 ~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~~~~~li~~~~~~g---~ 157 (175)
..+..+ .+.+.+......| +...+..+-..|...+.+ +.+..+++.....+...+..|-..|...| +
T Consensus 118 ~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~ 194 (452)
T 3e4b_A 118 QYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQ 194 (452)
T ss_dssp HCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Confidence 433322 2333333332222 233444455555555533 33334444444445556666666666666 6
Q ss_pred hHHHHHHHHHHHhcc
Q 045063 158 AKEAFGVFQAMTRER 172 (175)
Q Consensus 158 ~~~a~~~~~~m~~~g 172 (175)
.++|.+.|++-.+.|
T Consensus 195 ~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 195 QAELLKQMEAGVSRG 209 (452)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666655544
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.44 E-value=0.0043 Score=39.65 Aligned_cols=109 Identities=10% Similarity=-0.064 Sum_probs=71.7
Q ss_pred CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHH
Q 045063 56 NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESV 131 (175)
Q Consensus 56 ~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~ 131 (175)
++++|++.|++..+.| .|... +-..+...+.+++|...|++..+.| +...+..|-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5567777777776665 23332 4444555556667777777766653 45666666666766 67778887
Q ss_pred HHHHhccCC-CchhHHHHHHHHHh----cCChHHHHHHHHHHHhcc
Q 045063 132 EAFKEIEFK-DVVTWNALLSSFLR----HGLAKEAFGVFQAMTRER 172 (175)
Q Consensus 132 ~~~~~m~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 172 (175)
+.|+..-+. +...+..|-..|.. .++.++|..+|++-.+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777776543 55666666666666 678888888887776655
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.44 E-value=0.0024 Score=39.05 Aligned_cols=76 Identities=5% Similarity=-0.063 Sum_probs=55.4
Q ss_pred HHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 28 YTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 28 ~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
.|...|++..+ .+...|..+-.+|.+.|++++|...|.+..+.. +.+...|..+-.++.+.|+.++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566665432 356677888888888888888888888876652 23345777778888888888888888888765
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.41 E-value=0.0028 Score=41.92 Aligned_cols=95 Identities=8% Similarity=-0.028 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCC-C-----CH-----hhHHHHHHHHhcCCCchhHHHHHHHHHHh-----C
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLN-L-----TA-----YTFTPVLGACSALPAPERGKQVHALMIKG-----G 106 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~-~-----~~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~ 106 (175)
.+...-..+.+.|++++|.+.|++..+.... | +. ..|..+-.++.+.|++++|...+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3555667777889999999999987654222 1 11 15555666666666666666666665552 1
Q ss_pred CCcc-hHHH----HHHHHHHHhcCChHHHHHHHHhc
Q 045063 107 TDSE-PVVK----TALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 107 ~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~m 137 (175)
+.|+ ...| ...-.++...|++++|...|+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 1333 2345 55555555666666665555554
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.39 E-value=0.0025 Score=42.13 Aligned_cols=94 Identities=9% Similarity=0.046 Sum_probs=75.0
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCc------c-----hHHHHHHHHHHHhcCChHHHHHHHHhcc-------
Q 045063 77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDS------E-----PVVKTALMDMYSKYGLLGESVEAFKEIE------- 138 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~------~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~------- 138 (175)
..+...-+.+.+.|++++|...|++.++..... + ...|..+-.++.+.|++++|...++...
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345566677888999999999999998743220 2 2389999999999999999999888865
Q ss_pred --CC-CchhH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 139 --FK-DVVTW----NALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 139 --~~-~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.| +...| ...-.++...|++++|+..|++-.+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34 34567 8888899999999999999998754
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.38 E-value=0.0018 Score=48.02 Aligned_cols=92 Identities=9% Similarity=-0.097 Sum_probs=78.0
Q ss_pred hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH------------------HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 77 YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPV------------------VKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~------------------~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
..+..+-..+.+.|++++|...|.+..+. .|+.. .|..+..+|.+.|++++|...++...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667778889999999999999998764 34433 78999999999999999999999876
Q ss_pred --CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 139 --FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 139 --~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
.| +...|..+-.+|...|++++|...|++..+
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34 677899999999999999999999998754
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.27 E-value=0.0022 Score=38.40 Aligned_cols=62 Identities=6% Similarity=0.068 Sum_probs=45.5
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
...+..+-.++.+.|++++|...+++..+.. +.+...|..+-.+|.+.|++++|.+.|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4467777777788888888888888877653 2345577778888888888888888777643
No 194
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.24 E-value=0.0089 Score=46.70 Aligned_cols=124 Identities=10% Similarity=0.091 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHH--HHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFT--PVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
..|-..+....+.+.++.|.++|.+. +. ...+...|. +.+.... .++++.|+.+|+...+.- +-+...|...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34555666666678899999999998 32 112333443 3333322 236999999999998753 223456777888
Q ss_pred HHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 120 MYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
...+.|+.+.|..+|+... .....|...+.-=...|+.+.+..++++...
T Consensus 363 ~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999984 3577899999877888999999998888764
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.24 E-value=0.0047 Score=35.54 Aligned_cols=61 Identities=5% Similarity=-0.062 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
.|..+-..+.+.|++++|...|.+..+.. +.+...+..+-.++.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34455555555666666666666554431 12233455555555555555555555555554
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.03 E-value=0.0083 Score=34.43 Aligned_cols=78 Identities=12% Similarity=0.003 Sum_probs=55.9
Q ss_pred HhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHH
Q 045063 76 AYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSF 152 (175)
Q Consensus 76 ~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~ 152 (175)
...+..+-..+.+.|++++|...+++..+.. +.+...+..+...|.+.|++++|...|+... .| +...+..+-..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3466677777888889999998888888753 3356678888888888999999988888765 23 444555555544
Q ss_pred Hh
Q 045063 153 LR 154 (175)
Q Consensus 153 ~~ 154 (175)
.+
T Consensus 88 ~~ 89 (91)
T 1na3_A 88 QK 89 (91)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 197
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0045 Score=47.56 Aligned_cols=92 Identities=10% Similarity=0.050 Sum_probs=70.5
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhc--C-CCCC----HhhHHHHHHHHhcCCCchhHHHHHHHHHHh-----C-CCcch-H
Q 045063 47 QLFSYTRSRNFPATWALFCYMHST--C-LNLT----AYTFTPVLGACSALPAPERGKQVHALMIKG-----G-TDSEP-V 112 (175)
Q Consensus 47 li~~~~~~g~~~~a~~l~~~m~~~--~-~~~~----~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~-~ 112 (175)
.+..+.+.|++++|..++++..+. . +-|+ ..+++.+...|...|++++|..++++...- | -.|++ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355666789999999999998753 1 2222 248888999999999999999999988732 2 24444 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 113 VKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+++.|-..|...|++++|..++++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 78999999999999999998888754
No 198
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.95 E-value=0.006 Score=46.91 Aligned_cols=84 Identities=11% Similarity=0.049 Sum_probs=60.6
Q ss_pred CCCcchHHHHHHHHHhc---CCCCC---H-hhHHHHHHHHhcCCCchhHHHHHHHHHHh-----C-CCcch-HHHHHHHH
Q 045063 54 SRNFPATWALFCYMHST---CLNLT---A-YTFTPVLGACSALPAPERGKQVHALMIKG-----G-TDSEP-VVKTALMD 119 (175)
Q Consensus 54 ~g~~~~a~~l~~~m~~~---~~~~~---~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~-~~~~~li~ 119 (175)
.|++++|..++++.++. -+-|+ . .+++.|...|...|++++|..++++...- | -.|++ .+++.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 47788888888886542 22222 2 47888888888888888888888887732 2 24444 37888888
Q ss_pred HHHhcCChHHHHHHHHhc
Q 045063 120 MYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m 137 (175)
.|...|++++|..++++.
T Consensus 391 ~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHH
Confidence 888888888888888764
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.91 E-value=0.0053 Score=36.69 Aligned_cols=85 Identities=15% Similarity=-0.035 Sum_probs=59.0
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC-CCcchHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGG-TDSEPVVKTALM 118 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li 118 (175)
+...|..+-.+|.+.|++++|...|++..+... -+...|..+-.++.+.|++++|...+++..+.. -.++......+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 456677888888889999999999998876532 234578888888888999999988888877531 123444444444
Q ss_pred HHHHhcC
Q 045063 119 DMYSKYG 125 (175)
Q Consensus 119 ~~~~~~g 125 (175)
..+.+.+
T Consensus 85 ~~l~~~~ 91 (100)
T 3ma5_A 85 DAKLKAE 91 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHcc
Confidence 4444433
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.78 E-value=0.0078 Score=46.30 Aligned_cols=83 Identities=7% Similarity=-0.038 Sum_probs=66.3
Q ss_pred cCCCchhHHHHHHHHHHh--C-C---Ccch-HHHHHHHHHHHhcCChHHHHHHHHhcc-------CC---C-chhHHHHH
Q 045063 88 ALPAPERGKQVHALMIKG--G-T---DSEP-VVKTALMDMYSKYGLLGESVEAFKEIE-------FK---D-VVTWNALL 149 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~--~-~---~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~---~-~~~~~~li 149 (175)
..|++++|..++++..+. . + .|++ .+++.|..+|...|++++|..++++.. .+ + ..+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887742 1 1 3333 589999999999999999999998875 22 2 34699999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 045063 150 SSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..|...|++++|..++++-.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988643
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.75 E-value=0.014 Score=37.13 Aligned_cols=112 Identities=6% Similarity=-0.129 Sum_probs=85.3
Q ss_pred hcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc----CCCchh
Q 045063 20 DALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA----LPAPER 94 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~----~~~~~~ 94 (175)
.+-.++++.|.+.|++..+. +.... +-..|...+..+.|.+.|++..+.| +...+..|-..+.. .+++++
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCCccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 33446788899999987653 44444 6677777778888999999987764 45566666666666 789999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCChHHHHHHHHhccC
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALMDMYSK----YGLLGESVEAFKEIEF 139 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 139 (175)
|...+++..+.| +...+..|-..|.. .+++++|.+.|+.--+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 999999988765 56677888888888 8999999999987543
No 202
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.51 E-value=0.15 Score=37.33 Aligned_cols=142 Identities=6% Similarity=-0.056 Sum_probs=80.2
Q ss_pred hHHHHHhhhccC--C-CchhHHHHHHHHHhCC--CcchHHHHHHHHHhcCCCCCHhhHHHHHHHH----hcC---CCchh
Q 045063 27 VYTHQVFDEISH--G-DLSSLNSQLFSYTRSR--NFPATWALFCYMHSTCLNLTAYTFTPVLGAC----SAL---PAPER 94 (175)
Q Consensus 27 ~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g--~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~----~~~---~~~~~ 94 (175)
++|..+++++.. | +...|+.=-.++...| +++++++.++....... -+..+|+.--..+ .+. +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 466666666542 3 4445666666666666 77777777777655422 1222444333333 333 56667
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH--HHHHHHHhccC---CCchhHHHHHHHHHhcCC------hHHHHH
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG--ESVEAFKEIEF---KDVVTWNALLSSFLRHGL------AKEAFG 163 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~---~~~~~~~~li~~~~~~g~------~~~a~~ 163 (175)
+..+++.+.+.. +-+...|+.---...+.|.++ ++.++++.+.+ .|...|+.--..+.+.|+ ++++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 777777776543 345566666666666666666 66666666652 255556554444444454 566666
Q ss_pred HHHHHHh
Q 045063 164 VFQAMTR 170 (175)
Q Consensus 164 ~~~~m~~ 170 (175)
.+++.+.
T Consensus 208 ~~~~aI~ 214 (306)
T 3dra_A 208 YVKDKIV 214 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.42 E-value=0.012 Score=45.25 Aligned_cols=87 Identities=16% Similarity=-0.003 Sum_probs=69.2
Q ss_pred HHHHhcCCCchhHHHHHHHHHHh--C-C---Ccc-hHHHHHHHHHHHhcCChHHHHHHHHhcc-------CC----Cchh
Q 045063 83 LGACSALPAPERGKQVHALMIKG--G-T---DSE-PVVKTALMDMYSKYGLLGESVEAFKEIE-------FK----DVVT 144 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~--~-~---~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~----~~~~ 144 (175)
+.-+.+.|++++|..++++..+. . + .|+ ..+++.+...|...|++++|..++++.. .+ -..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566788999999999988742 1 1 222 3589999999999999999999988765 22 2346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 145 WNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
++.|-..|...|++++|..++++-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8999999999999999999998864
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.39 E-value=0.16 Score=40.31 Aligned_cols=146 Identities=8% Similarity=-0.061 Sum_probs=109.2
Q ss_pred CCChhHHHHHhhhccC--C-CchhHHHHHHHHHhCCC----------cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcC
Q 045063 23 PKRYVYTHQVFDEISH--G-DLSSLNSQLFSYTRSRN----------FPATWALFCYMHSTCLNLTAYTFTPVLGACSAL 89 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~ 89 (175)
...-++|.+.++++.. | +...|+.==.++.+.|+ ++++++.++.+.+... -+..+|..--..+.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3344567888887753 3 55667766666666666 8999999999977532 3566888888888888
Q ss_pred C--CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC-ChHHHHHHHHhccCC---CchhHHHHHHHHHhc--------
Q 045063 90 P--APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG-LLGESVEAFKEIEFK---DVVTWNALLSSFLRH-------- 155 (175)
Q Consensus 90 ~--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~-------- 155 (175)
+ +++++.+.++.+.+.. +-+-..|+.--....+.| .++++.+.++.+.+. |...|+..-..+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 8 5699999999999865 347778888888888888 899999999998754 666788776666653
Q ss_pred ------CChHHHHHHHHHHHh
Q 045063 156 ------GLAKEAFGVFQAMTR 170 (175)
Q Consensus 156 ------g~~~~a~~~~~~m~~ 170 (175)
+.++++.+.+++...
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHh
Confidence 456788887777654
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.27 E-value=0.028 Score=37.01 Aligned_cols=71 Identities=8% Similarity=0.036 Sum_probs=40.8
Q ss_pred chhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhc-----------CChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCC
Q 045063 92 PERGKQVHALMIKGGTDS-EPVVKTALMDMYSKY-----------GLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGL 157 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~ 157 (175)
+++|...|++.++. .| +...|..+-.+|... |++++|.+.|+... .|+...|..-+..
T Consensus 62 ~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~------ 133 (158)
T 1zu2_A 62 IQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM------ 133 (158)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH------
Confidence 44666666666653 23 344666666666655 37777777777765 5655555444443
Q ss_pred hHHHHHHHHHHHh
Q 045063 158 AKEAFGVFQAMTR 170 (175)
Q Consensus 158 ~~~a~~~~~~m~~ 170 (175)
.++|.++.-+...
T Consensus 134 ~~ka~el~~~~~~ 146 (158)
T 1zu2_A 134 TAKAPQLHAEAYK 146 (158)
T ss_dssp HHTHHHHHHHHHH
T ss_pred HHhCHhccCcccc
Confidence 3445555444443
No 206
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=96.19 E-value=0.23 Score=36.78 Aligned_cols=144 Identities=6% Similarity=-0.030 Sum_probs=104.9
Q ss_pred hhHHHHHhhhccC---CCchhHHHHHHHHHhCCC--cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-chhHHHHH
Q 045063 26 YVYTHQVFDEISH---GDLSSLNSQLFSYTRSRN--FPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-PERGKQVH 99 (175)
Q Consensus 26 ~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-~~~a~~~~ 99 (175)
++++...++.+.. .+..+|+.=-..+.+.|+ ++++++.++.+.+.. +-|...|+.---.+.+.|. .+++.+.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777643 477788887777878774 789999999998763 3467788887777778887 48999999
Q ss_pred HHHHHhCCCcchHHHHHHHHHHHhc--------------CChHHHHHHHHhcc--CC-CchhHHHHHHHHHhc-------
Q 045063 100 ALMIKGGTDSEPVVKTALMDMYSKY--------------GLLGESVEAFKEIE--FK-DVVTWNALLSSFLRH------- 155 (175)
Q Consensus 100 ~~m~~~~~~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~------- 155 (175)
..+++..+ -|...|+..-..+.+. +.++++.+.++... .| |...|+-+-..+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 99998653 4666777766666554 45777888887765 45 777787655544444
Q ss_pred ----CChHHHHHHHHHHHhc
Q 045063 156 ----GLAKEAFGVFQAMTRE 171 (175)
Q Consensus 156 ----g~~~~a~~~~~~m~~~ 171 (175)
+.++++++.++++.+.
T Consensus 248 ~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 4577888888887653
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.15 E-value=0.025 Score=46.19 Aligned_cols=41 Identities=10% Similarity=0.063 Sum_probs=24.0
Q ss_pred cCCCChhHHHH-Hhhhcc-CCCchhHHHHHHHHHhCCCcchHHHHH
Q 045063 21 ALPKRYVYTHQ-VFDEIS-HGDLSSLNSQLFSYTRSRNFPATWALF 64 (175)
Q Consensus 21 ~~~~~~~~a~~-~f~~~~-~~~~~~~~~li~~~~~~g~~~~a~~l~ 64 (175)
...+++++|.+ ++..++ .. ....++..+.+.|..+.|+++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~~~~---~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVEGKD---SLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHTTCHHHHHHHTGGGCCCHH---HHHHHHHHHHHTTCHHHHHHHC
T ss_pred HHhCCHHHHHHHHHhcCCchH---HHHHHHHHHHhCCChHHheecC
Confidence 35677888877 654433 21 2266666666666666666544
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.11 E-value=0.025 Score=46.20 Aligned_cols=44 Identities=5% Similarity=-0.093 Sum_probs=20.7
Q ss_pred hCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHH
Q 045063 53 RSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALM 102 (175)
Q Consensus 53 ~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m 102 (175)
+.|++++|+++.+.+ .+...|..+-..+.+.++++.|...|.++
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555443322 23344555555555555555555555543
No 209
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.10 E-value=0.28 Score=36.54 Aligned_cols=144 Identities=9% Similarity=-0.058 Sum_probs=95.9
Q ss_pred ChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcc--------hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC--
Q 045063 25 RYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFP--------ATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-- 91 (175)
Q Consensus 25 ~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-- 91 (175)
+++++.+.++++.+ +|..+|+.--.++.+.|.++ ++++.++++.+... -|...|+.--..+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 56778888887764 36667766666666655566 88888888877632 466678777777777765
Q ss_pred -----chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh--------------------HHHHHHHHhccC-------
Q 045063 92 -----PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL--------------------GESVEAFKEIEF------- 139 (175)
Q Consensus 92 -----~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~------- 139 (175)
++++.+.+.+.+... +-|...|+-+-..+.+.|.- .+..++...+..
T Consensus 219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 466777777776643 34666787777666666653 334444444432
Q ss_pred --CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 140 --KDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 140 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
+....+..|...|...|+.++|.++++.+.+
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3455678888999999999999999999853
No 210
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.06 E-value=0.12 Score=40.30 Aligned_cols=43 Identities=5% Similarity=-0.290 Sum_probs=27.4
Q ss_pred HHHHHhhhccC--C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhc
Q 045063 28 YTHQVFDEISH--G-DLSSLNSQLFSYTRSRNFPATWALFCYMHST 70 (175)
Q Consensus 28 ~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~ 70 (175)
.+..+|++... | ....|-..+.-+.+.|+.+.|.++|++....
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 35556666543 2 3445666666666777777888777777665
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.00 E-value=0.031 Score=32.69 Aligned_cols=54 Identities=7% Similarity=-0.052 Sum_probs=26.4
Q ss_pred HHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 50 SYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 50 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
.+.+.|++++|...|++..+.. +-+.. .+..+-.++.+.|++++|...+++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555554431 11223 444444555555555555555555554
No 212
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=95.83 E-value=0.38 Score=35.85 Aligned_cols=127 Identities=8% Similarity=-0.049 Sum_probs=91.2
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP-APERGKQVHALMIKGGTDSEPVVKTALMDMYS 122 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 122 (175)
++.+-....+....++|+++++++...+. -+..+|+.--..+...+ .++++..+++.+.+.. +-+..+|+.---.+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444455666799999999976532 34457777777777777 5899999999998754 346678888777777
Q ss_pred hc-C-ChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChH--------HHHHHHHHHHhcc
Q 045063 123 KY-G-LLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAK--------EAFGVFQAMTRER 172 (175)
Q Consensus 123 ~~-g-~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g 172 (175)
+. + +++++.++++.+.+. |...|+.-...+.+.|..+ ++++.++++.+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d 197 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD 197 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC
Confidence 76 7 889999999998854 5566776555555555555 8888888887754
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.74 E-value=0.047 Score=31.90 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=46.1
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCcchH-HHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 83 LGACSALPAPERGKQVHALMIKGGTDSEPV-VKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
-..+.+.|++++|...+++..+.. +.+.. .|..+-.+|.+.|++++|.+.|+...
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455678899999999999998764 23556 88889999999999999999999876
No 214
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.067 Score=43.98 Aligned_cols=121 Identities=8% Similarity=-0.055 Sum_probs=74.8
Q ss_pred hhhhhcCCCC-hhHHHHHhhhccCCCc--hh--HHHHHHHHHhCCCcc-hHHHHHHHHHhc------CCCCCHh------
Q 045063 16 ISIADALPKR-YVYTHQVFDEISHGDL--SS--LNSQLFSYTRSRNFP-ATWALFCYMHST------CLNLTAY------ 77 (175)
Q Consensus 16 ll~~~~~~~~-~~~a~~~f~~~~~~~~--~~--~~~li~~~~~~g~~~-~a~~l~~~m~~~------~~~~~~~------ 77 (175)
|+..+...++ ++.|..+|+++.+.+. .+ ...+|..+.+.++-+ +|.++..+..+. ...+...
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 5666666666 5788889988865322 22 233444444443222 555666554321 1222111
Q ss_pred h-HHHHH----HHHhcCCCchhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 78 T-FTPVL----GACSALPAPERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 78 t-~~~ll----~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
. -..|+ +.|.+.|+++.|..+-.+... +.|+. .+|-.|..+|.+.|+++.|.-.+..++
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 0 01122 334567889999998888776 45664 599999999999999999999988886
No 215
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.46 E-value=0.011 Score=38.90 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=72.6
Q ss_pred hcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCc----------chHHHHHHHHHhcCCCCC-HhhHHHHHHH
Q 045063 20 DALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNF----------PATWALFCYMHSTCLNLT-AYTFTPVLGA 85 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~----------~~a~~l~~~m~~~~~~~~-~~t~~~ll~~ 85 (175)
..+.+.+++|.+.++...+ .+...|+.+-.++.+.+++ ++|...|++..+. .|+ ..+|..+-++
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 3455678888888888653 3777888888888888765 4888888887654 344 4588888888
Q ss_pred HhcCC-----------CchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 86 CSALP-----------APERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 86 ~~~~~-----------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
+.+.| ++++|.+.|++..+ +.|+...|..-+..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 88764 89999999999987 46777666555544
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.46 E-value=0.13 Score=30.34 Aligned_cols=64 Identities=6% Similarity=-0.089 Sum_probs=43.6
Q ss_pred CHhhHHHHHHHHhcCCC---chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063 75 TAYTFTPVLGACSALPA---PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 75 ~~~t~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 139 (175)
|...+..+-.++...++ .++|..++++..+.. +-+......+-..+.+.|++++|...|+.+.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555555543332 688888888887753 23455677777888888888888888888763
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.37 E-value=0.56 Score=37.26 Aligned_cols=118 Identities=6% Similarity=-0.069 Sum_probs=89.8
Q ss_pred hCCC-cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC----------chhHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 045063 53 RSRN-FPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA----------PERGKQVHALMIKGGTDSEPVVKTALMDMY 121 (175)
Q Consensus 53 ~~g~-~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 121 (175)
+.|+ .++|++.++++..... -+...|+.-=.++.+.++ ++++.+.++.+.+.. +-+..+|+.---.+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4444 4588999999976522 234467665555555555 889999999998864 34677898888888
Q ss_pred HhcC--ChHHHHHHHHhccC---CCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhcc
Q 045063 122 SKYG--LLGESVEAFKEIEF---KDVVTWNALLSSFLRHG-LAKEAFGVFQAMTRER 172 (175)
Q Consensus 122 ~~~g--~~~~a~~~~~~m~~---~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g 172 (175)
.+.| +++++.+.++.+.+ +|...|+.--..+.+.| ..+++++.+.++.+.+
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 8899 67999999999873 47788888888888888 8899999998887654
No 218
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.32 Score=32.53 Aligned_cols=126 Identities=7% Similarity=-0.091 Sum_probs=70.1
Q ss_pred cCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHH
Q 045063 21 ALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHA 100 (175)
Q Consensus 21 ~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~ 100 (175)
...|+++.|.++-+++ .+...|..|-....+.|+++-|...|.... . |..+.--+...|+.+....+-.
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D--~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH-------S--FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C--HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C--HHHHHHHHHHhCCHHHHHHHHH
Confidence 3567777777776555 345567777777777777777777777651 1 1122222333444444333322
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 101 LMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 101 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
.-...| -++.--..+.-.|+++++.+++.+..+.. .-.-.....|..+.|.++..++
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~-----eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLP-----LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHH-----HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChH-----HHHHHHHHcCcHHHHHHHHHHh
Confidence 222222 34555556667788888888887654322 1111123356667777777665
No 219
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.26 Score=40.54 Aligned_cols=127 Identities=8% Similarity=0.010 Sum_probs=78.8
Q ss_pred hHHHHHHHHH----hCCC-cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC--CchhHHHHHHHHHH-----hCCCcc
Q 045063 43 SLNSQLFSYT----RSRN-FPATWALFCYMHSTCLNLTAYTFTPVLGACSALP--APERGKQVHALMIK-----GGTDSE 110 (175)
Q Consensus 43 ~~~~li~~~~----~~g~-~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~--~~~~a~~~~~~m~~-----~~~~~~ 110 (175)
+-|.|..++. -.|+ .+.|.++|+++.......+.....+++..+.+.+ +++.+.-+.+.+.. ....+.
T Consensus 246 v~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~ 325 (754)
T 4gns_B 246 VNNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPR 325 (754)
T ss_dssp SSSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred ccHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccc
Confidence 3455544443 3455 4779999999876533222222334444444443 22333333333321 011111
Q ss_pred -----------hHHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 111 -----------PVVKTALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 111 -----------~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
......-.+.+...|+++-|.++-+... .| +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1233444566778999999999999876 45 67799999999999999999999999874
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.86 E-value=0.19 Score=32.78 Aligned_cols=80 Identities=6% Similarity=-0.103 Sum_probs=54.1
Q ss_pred cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC---CchhHHHHHHHHHHhCCCc--chHHHHHHHHHHHhcCChHHHH
Q 045063 57 FPATWALFCYMHSTCLNLTAYTFTPVLGACSALP---APERGKQVHALMIKGGTDS--EPVVKTALMDMYSKYGLLGESV 131 (175)
Q Consensus 57 ~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~ 131 (175)
+..+.+.|.+-...|. ++..+...+-.++++++ +.+++..+++...+.. .| +...+=.+--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455566666555544 56666666677777777 5568888888888764 24 2333444555668899999999
Q ss_pred HHHHhcc
Q 045063 132 EAFKEIE 138 (175)
Q Consensus 132 ~~~~~m~ 138 (175)
+.++...
T Consensus 92 ~y~~~lL 98 (152)
T 1pc2_A 92 KYVRGLL 98 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888876
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.47 E-value=0.22 Score=29.81 Aligned_cols=67 Identities=13% Similarity=-0.105 Sum_probs=51.0
Q ss_pred CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC------CCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063 74 LTAYTFTPVLGACSALPAPERGKQVHALMIKGG------TDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK 140 (175)
Q Consensus 74 ~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (175)
.+..-+..|-..+.+.++++.|...++...+.- -.+....+..+..+|.+.|+++.|...+++..+-
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 355566677788888899999999888877531 1245567888888888999999998888887654
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.46 E-value=0.38 Score=28.68 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 144 TWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 144 ~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
++..|-.+|.+.|+++.|...+++.
T Consensus 48 i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 48 VLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 223
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.37 E-value=0.2 Score=37.77 Aligned_cols=61 Identities=11% Similarity=0.265 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcc--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh-----cccCC
Q 045063 115 TALMDMYSKYGLLGESVEAFKEIE--FK-DVVTWNALLSSFLRHGLAKEAFGVFQAMTR-----ERVEF 175 (175)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~m~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p 175 (175)
..+++.+...|+++++........ .| +...|..+|.++.+.|+..+|++.|++..+ -|+.|
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456677788999999988777765 34 677999999999999999999999988744 37776
No 224
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=94.20 E-value=1.2 Score=32.89 Aligned_cols=148 Identities=8% Similarity=-0.054 Sum_probs=99.1
Q ss_pred cCCCChh-HHHHHhhhccC--C-CchhHHHHHHHHHhCCC----------cchHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 045063 21 ALPKRYV-YTHQVFDEISH--G-DLSSLNSQLFSYTRSRN----------FPATWALFCYMHSTCLNLTAYTFTPVLGAC 86 (175)
Q Consensus 21 ~~~~~~~-~a~~~f~~~~~--~-~~~~~~~li~~~~~~g~----------~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~ 86 (175)
.+.|.++ +|..+++.+.. | +...||.==..+...|. +++++.+++.+... -+-+..+|+.--..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 3445555 68888888754 3 34445443333333222 57888888888765 223566777777677
Q ss_pred hcCCC--chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC-hHHHHHHHHhccC---CCchhHHHHHHHHHhc-----
Q 045063 87 SALPA--PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL-LGESVEAFKEIEF---KDVVTWNALLSSFLRH----- 155 (175)
Q Consensus 87 ~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~---~~~~~~~~li~~~~~~----- 155 (175)
.+.+. ++++.++++.+.+.. +-|-..|+----.....|. ++++.+.++.+.+ .|...|+..-..+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 77774 689999999998764 3577788877777778887 5888888888763 3667787766555544
Q ss_pred ---------CChHHHHHHHHHHHh
Q 045063 156 ---------GLAKEAFGVFQAMTR 170 (175)
Q Consensus 156 ---------g~~~~a~~~~~~m~~ 170 (175)
+.++++++.+.+...
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~ 221 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF 221 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHH
Confidence 346777777777654
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.94 E-value=0.47 Score=30.92 Aligned_cols=78 Identities=8% Similarity=-0.081 Sum_probs=56.9
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC---ChHHHHHHHHhccCCC-----chhHHHHHHHHHhcCChHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG---LLGESVEAFKEIEFKD-----VVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~-----~~~~~~li~~~~~~g~~~~a~~ 163 (175)
...+++-|.+-.+.+. ++..+.-.+.-++++++ +++++..+++...+.+ ...+-.|--+|.+.|+.++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3455556665555444 78888888888899988 6778998888876443 2234445556799999999999
Q ss_pred HHHHHHh
Q 045063 164 VFQAMTR 170 (175)
Q Consensus 164 ~~~~m~~ 170 (175)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998865
No 226
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=93.78 E-value=0.62 Score=28.08 Aligned_cols=79 Identities=11% Similarity=0.134 Sum_probs=57.9
Q ss_pred CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
-..++|..+-+.+...+. ...+--+-+....+.|++++|..+.+...-||...|-+|-. .|.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356788888777776543 22233334466788999999999999888899999988865 47888888888777776
Q ss_pred hcc
Q 045063 170 RER 172 (175)
Q Consensus 170 ~~g 172 (175)
..|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 554
No 227
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=93.72 E-value=0.64 Score=28.06 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=56.3
Q ss_pred CCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
-..++|.-+-+.+...+. ...+--+-+....+.|++++|..+.+...-||...|-+|-. .|.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 356778888777776543 22233333466778999999999999888889999988765 47787788777776665
Q ss_pred hcc
Q 045063 170 RER 172 (175)
Q Consensus 170 ~~g 172 (175)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 544
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.61 E-value=0.94 Score=29.59 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=73.3
Q ss_pred CCCchhHHHHHHHHHhCCCc------chHHHHHHHHHhcCCCCCHh----hHHHHHH---HHhcCCCchhHHHHHHHHHH
Q 045063 38 HGDLSSLNSQLFSYTRSRNF------PATWALFCYMHSTCLNLTAY----TFTPVLG---ACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 38 ~~~~~~~~~li~~~~~~g~~------~~a~~l~~~m~~~~~~~~~~----t~~~ll~---~~~~~~~~~~a~~~~~~m~~ 104 (175)
..|..+|=..+.-.-+.|+. +...++|++...+ ++|+.. .|.-|.- .+...+++++|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34667777777777777888 7778888877665 666532 1221111 11223788899999998876
Q ss_pred hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHH
Q 045063 105 GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSS 151 (175)
Q Consensus 105 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~ 151 (175)
.+-.- ...|......-.+.|++..|.+++..-. ..+....++.|+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 53333 6778888888888999999988888754 2244445555544
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.87 E-value=0.021 Score=44.66 Aligned_cols=142 Identities=10% Similarity=0.005 Sum_probs=103.9
Q ss_pred CcchhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063 12 AKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91 (175)
Q Consensus 12 ~~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~ 91 (175)
.|+-|-.+..+.+.+.+|.+.| ++..|...|.-+|.+..+.|.+++-...+.-.++.. -+...=+.|+-++++.++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNR 131 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCS
T ss_pred HHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCc
Confidence 4455666777777777766655 345677888999999999999988887665554442 233344588889999998
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc------------------------CCCchhHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE------------------------FKDVVTWNA 147 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~------------------------~~~~~~~~~ 147 (175)
+.+-++++. .||..-...+-+-+...|.++.|.-+|..+. ..++.||-.
T Consensus 132 L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 132 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 877665532 4676667777788888888888888887765 127889999
Q ss_pred HHHHHHhcCChHHHHHH
Q 045063 148 LLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~ 164 (175)
+-.+|+..+.+.-|...
T Consensus 205 V~~ACvd~~EfrLAqic 221 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMC 221 (624)
T ss_dssp HTHHHHHSCTTTTTTHH
T ss_pred HHHHHhCchHHHHHHHh
Confidence 99999999988776543
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.40 E-value=0.79 Score=34.54 Aligned_cols=67 Identities=10% Similarity=-0.031 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH-----hCCCcchHH
Q 045063 46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK-----GGTDSEPVV 113 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~ 113 (175)
.++..+...|++++|.......... -+.+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445566677777777777776544 334556777777777777777777777777653 377776654
No 231
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.98 E-value=3 Score=31.31 Aligned_cols=130 Identities=8% Similarity=-0.059 Sum_probs=79.9
Q ss_pred CCchhHHHHHHHHHhC--C---CcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHh----cCC-CchhHHHHHHHHHH---
Q 045063 39 GDLSSLNSQLFSYTRS--R---NFPATWALFCYMHSTCLNLTAY-TFTPVLGACS----ALP-APERGKQVHALMIK--- 104 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~--g---~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~----~~~-~~~~a~~~~~~m~~--- 104 (175)
.+...|...+.+.... + ++.+|..+|++..+. .|+.. .|..+--++. ..+ .......+-..+..
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4777888888776542 2 346889999988654 34422 3332222221 111 11122221111111
Q ss_pred -hCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 105 -GGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 105 -~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..-+.+...|..+...+...|++++|...+++.. .|+...|..+-..+.-.|+.++|.+.|++-.+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1225566788888777777899999999999876 45555566666777889999999999887654
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.75 E-value=1.3 Score=32.13 Aligned_cols=79 Identities=9% Similarity=-0.026 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHhCCCcc---hHHHHHHHHHHHhc-----CChHHHHHHHHhcc--CC--CchhHHHHHHHHHhc-CChH
Q 045063 93 ERGKQVHALMIKGGTDSE---PVVKTALMDMYSKY-----GLLGESVEAFKEIE--FK--DVVTWNALLSSFLRH-GLAK 159 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~--~~--~~~~~~~li~~~~~~-g~~~ 159 (175)
+.+...+++..+ +.|+ -..|+.+...|.+. |+.++|.+.|++-. .| +..++..+-..+++. |+.+
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 455555555555 3455 45788888888884 89999999988875 44 477788888888774 8888
Q ss_pred HHHHHHHHHHhccc
Q 045063 160 EAFGVFQAMTRERV 173 (175)
Q Consensus 160 ~a~~~~~~m~~~g~ 173 (175)
.+.+.+++-.....
T Consensus 258 ~a~~~L~kAL~a~p 271 (301)
T 3u64_A 258 GFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHcCCC
Confidence 88888888776543
No 233
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.52 E-value=0.9 Score=34.14 Aligned_cols=72 Identities=13% Similarity=-0.031 Sum_probs=57.5
Q ss_pred CCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc--CCCchhHH
Q 045063 73 NLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE--FKDVVTWN 146 (175)
Q Consensus 73 ~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~ 146 (175)
+.+..+|..+-..+...|++++|.+.+++....+ |+...|..+-..+.-.|++++|.+.+++.. .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 4566677777666666799999999999999875 787788788888899999999999998865 56555543
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.48 E-value=2 Score=28.10 Aligned_cols=98 Identities=9% Similarity=0.008 Sum_probs=65.5
Q ss_pred hhHHHHHHHHhcCCCc------hhHHHHHHHHHHhCCCcchH-HHHHHHHHH------HhcCChHHHHHHHHhccC---C
Q 045063 77 YTFTPVLGACSALPAP------ERGKQVHALMIKGGTDSEPV-VKTALMDMY------SKYGLLGESVEAFKEIEF---K 140 (175)
Q Consensus 77 ~t~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~li~~~------~~~g~~~~a~~~~~~m~~---~ 140 (175)
.+|-..+.-.-+.|++ ++.+.+|++.... ++|+.. .|...|..+ ...++.++|.++|+.+.. .
T Consensus 14 d~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKk 92 (161)
T 4h7y_A 14 EDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKK 92 (161)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHH
Confidence 3666666666666777 7778888877764 566532 233333222 345899999999998852 2
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhcccCC
Q 045063 141 DVVTWNALLSSFLRHGLAKEAFGVFQAMTRERVEF 175 (175)
Q Consensus 141 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (175)
=...|-..-.--.+.|++.+|.+++..-...|-+|
T Consensus 93 FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 93 FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 24456666666678999999999998776655443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.22 E-value=1.2 Score=28.01 Aligned_cols=81 Identities=7% Similarity=-0.080 Sum_probs=52.2
Q ss_pred CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchh---HHHHHHHHHHhCCCc-chH-HHHHHHHHHHhcCChHHH
Q 045063 56 NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPER---GKQVHALMIKGGTDS-EPV-VKTALMDMYSKYGLLGES 130 (175)
Q Consensus 56 ~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~~-~~~-~~~~li~~~~~~g~~~~a 130 (175)
.+..+.+.|.+....|. |+..+-..+-.++.++..... +..+++.+.+.+ .| ... ..=.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455566665555444 666666666677777776655 777777776643 23 222 223344677899999999
Q ss_pred HHHHHhcc
Q 045063 131 VEAFKEIE 138 (175)
Q Consensus 131 ~~~~~~m~ 138 (175)
.+.++.+.
T Consensus 94 ~~~~~~lL 101 (126)
T 1nzn_A 94 LKYVRGLL 101 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888876
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.89 E-value=1.7 Score=26.29 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+.+.-+..+....+.|+..+..+-+.++.|.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444455555555555555555555555555555554
No 237
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.82 E-value=1.7 Score=31.57 Aligned_cols=76 Identities=8% Similarity=-0.033 Sum_probs=39.8
Q ss_pred chhHHHHHHHHHhC-----CCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhc-CCCchhHHHHHHHHHHhCCC--cchH
Q 045063 41 LSSLNSQLFSYTRS-----RNFPATWALFCYMHSTCLNLTAYTFTPVLGACSA-LPAPERGKQVHALMIKGGTD--SEPV 112 (175)
Q Consensus 41 ~~~~~~li~~~~~~-----g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~--~~~~ 112 (175)
-..|..+...|.+. |+.+.|.+.|++-++-+..-+..++...-..++. .++.+++.+.+++....... |+..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 34566666666663 6666666666665443221123333344444555 36666666666666654443 4444
Q ss_pred HHHH
Q 045063 113 VKTA 116 (175)
Q Consensus 113 ~~~~ 116 (175)
..+.
T Consensus 279 lan~ 282 (301)
T 3u64_A 279 LLVI 282 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.45 E-value=3 Score=36.08 Aligned_cols=143 Identities=9% Similarity=0.030 Sum_probs=89.8
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC---------------------
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL--------------------- 74 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~--------------------- 74 (175)
++..+.+.+.++.+.++..-.++..... =.+-.+|...|++++|.+.|.+.-. |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~~~~~~-yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCCCHHHH-HHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhhHHHHHHHhhhccCCcHHH-HHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccc
Confidence 4445555666666666554444333222 2344667788999999999977421 1111
Q ss_pred --CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcc----hHHHHHHHHHHHhcCChHHHHHHHHhccCCCc--hhHH
Q 045063 75 --TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSE----PVVKTALMDMYSKYGLLGESVEAFKEIEFKDV--VTWN 146 (175)
Q Consensus 75 --~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~ 146 (175)
-..=|.-++.-+.+.+.++.+.++-...++..-.-+ ...|..+..++...|++++|...+-.++.+.. ....
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr 975 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL 975 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 112366677778888888888887776665422111 23688999999999999999999887764422 2355
Q ss_pred HHHHHHHhcCChHH
Q 045063 147 ALLSSFLRHGLAKE 160 (175)
Q Consensus 147 ~li~~~~~~g~~~~ 160 (175)
.||...|..|..+.
T Consensus 976 ~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHCCHHH
T ss_pred HHHHHHHhCCChhh
Confidence 56666665555443
No 239
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.16 E-value=2.2 Score=24.93 Aligned_cols=64 Identities=5% Similarity=-0.077 Sum_probs=40.3
Q ss_pred CchhHHHHHHHHHhCCC---cchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045063 40 DLSSLNSQLFSYTRSRN---FPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKG 105 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~---~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~ 105 (175)
+...+..+-.++...++ .++|..++++..+. .|+. .....+-..+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 57777777777553 3333 35666666777788888888888877764
No 240
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.99 E-value=3.7 Score=27.41 Aligned_cols=143 Identities=8% Similarity=-0.055 Sum_probs=76.6
Q ss_pred hhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHH
Q 045063 18 IADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQ 97 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~ 97 (175)
..+++.+..+....+.+.+..++...-...+.++.+.|+. ++...+.++.+. ++...-...+.++.+.++.+....
T Consensus 41 ~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~ 116 (211)
T 3ltm_A 41 YALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAAVALGQIGDERAVEP 116 (211)
T ss_dssp HHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGHHH
T ss_pred HHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHHHH
Confidence 3333344444444444444455555555566666666553 334444444322 455555555666666666444433
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 98 VHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 98 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+.. +.+ .++..+-...+.+.++.|..+....+...+..+|..+-...+.++.+.+. +.+...+.++.
T Consensus 117 L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 117 LIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 333 222 35555666666777777766555555555556666666666666676665 44555555544
No 241
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=88.82 E-value=5.4 Score=29.09 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccCCC---chhHHHHHHHHHhcCC--hHHHHHHHHHHHhccc
Q 045063 113 VKTALMDMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSSFLRHGL--AKEAFGVFQAMTRERV 173 (175)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~ 173 (175)
..+.++.=|...|+.++|.+.++++..|. .+++.++..++-+.++ .+.+..++.++...|+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 45788888889999999999999998772 3345556666555543 4556778888876664
No 242
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=88.77 E-value=0.91 Score=28.60 Aligned_cols=61 Identities=7% Similarity=0.012 Sum_probs=41.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCCC--cchHHHHHHHHHhcCCCCCH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSRN--FPATWALFCYMHSTCLNLTA 76 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~~~~ 76 (175)
+|.-|...|+.++|...++++..|. ..+...+..++-+.++ .+.+.+++..+...|+-+..
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 6777777888888888888887662 3345566666666542 35677777777766654444
No 243
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=88.14 E-value=1.2 Score=26.47 Aligned_cols=37 Identities=8% Similarity=-0.026 Sum_probs=28.5
Q ss_pred CChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchH
Q 045063 24 KRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPAT 60 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a 60 (175)
...+.|.++++.++.++..+|..++.++.+.|...-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 5778888888888888888888888888776654444
No 244
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.07 E-value=3.7 Score=26.26 Aligned_cols=57 Identities=7% Similarity=0.074 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC---CCchhHHHHHH
Q 045063 94 RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF---KDVVTWNALLS 150 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~li~ 150 (175)
+...-+..+....+.|+..+..+-+.++.|.+|+..|.++|+.++. +...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 3444444454556677777777777777777777777777777662 23334665554
No 245
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.84 E-value=4.3 Score=26.82 Aligned_cols=146 Identities=8% Similarity=-0.053 Sum_probs=91.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
.+.++++.+..+....+.+.+..++...-...+.++.+.|+. ++...+.++... ++...-...+.++.+.++.+..
T Consensus 34 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~~~ 109 (201)
T 3ltj_A 34 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALKD---EDGWVRQSAAVALGQIGDERAV 109 (201)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHH
Confidence 344444555555556666666667777777777777777764 444455554433 5666666777777777776554
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 170 (175)
..+...+ + .++..+-...+.+.++.|+-+....+...+..+|..+-...+.++.+.|. +.+...+.++.+
T Consensus 110 ~~L~~~l-~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 110 EPLIKAL-K---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHT-T---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHH-c---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 4444433 2 45666666777788888876666666666666777777777777777776 455555555543
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.33 E-value=2.9 Score=31.93 Aligned_cols=94 Identities=7% Similarity=-0.131 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCC--HhhHHHHHHHHhcCCCchhHHHHHHHHHHh---CCCcchH----H
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLT--AYTFTPVLGACSALPAPERGKQVHALMIKG---GTDSEPV----V 113 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~--~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~----~ 113 (175)
++..+-.-|.+.|++++|.+.|.+++.....+. ...+-.++..+...+++..+.....+.... +..|+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 577889999999999999999999987633333 347888889999999999999999887632 3233322 1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 114 KTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
|..++ +...+++.+|.+.|-+..
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHHh
Confidence 22222 235788998888776643
No 247
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=86.24 E-value=4.5 Score=25.34 Aligned_cols=74 Identities=8% Similarity=0.016 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC--hHHHHHHHHhccCCCchhHHHHHHHHH
Q 045063 79 FTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL--LGESVEAFKEIEFKDVVTWNALLSSFL 153 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~~~ 153 (175)
...+++=|...|+.++|.+.++++.... -.+..+...+..+.-+.++ .+.+..++..+...+..+-+.+..|+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~ 85 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 85 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHH
Confidence 3445555555566666665555553111 1112233333344333321 233455555554455555555555443
No 248
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=84.43 E-value=1.1 Score=29.17 Aligned_cols=61 Identities=7% Similarity=0.012 Sum_probs=40.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCCC--cchHHHHHHHHHhcCCCCCH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSRN--FPATWALFCYMHSTCLNLTA 76 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~~~~ 76 (175)
+|.-|...|+.++|...++++..|. ..+...+..++-+.++ -+.+.+++..+...|+-+..
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 6777777888888888888887652 3345566666666432 34677777777766654444
No 249
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.98 E-value=6.6 Score=25.35 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=37.8
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhcc---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063 110 EPVVKTALMDMYSKYGLLGESVEAFKEIE---FKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 110 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 173 (175)
+......-++.....|+-|.-.++..++. +++....-.+-.+|.+.|+..+|.+++++--+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44445555566666666666666666632 23444455555666666666666666666666654
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.92 E-value=7.5 Score=25.91 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=72.8
Q ss_pred HHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 50 SYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 50 ~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
--.+.|+++.|+++-+++ -+...|..|-+...+.|+++.|...|+.... +..+.-.|.-.|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999998876 4677999999999999999999999997642 4556666777788777
Q ss_pred HHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 130 SVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 130 a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
..++-+.-...+ -+|.-..++.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g--~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE--DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc--cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666544433221 244555556666777777777655
No 251
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=82.94 E-value=4.2 Score=26.31 Aligned_cols=77 Identities=9% Similarity=0.026 Sum_probs=42.6
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC--hHHHHHHHHhccCCCchhHHHHHHHHHhc
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGL--LGESVEAFKEIEFKDVVTWNALLSSFLRH 155 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~li~~~~~~ 155 (175)
....+++=|...++.++|.+.++++.... -.+..+...+..+.-+.++ .+.+..++..+...+..+-+.+..|+.+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~v 89 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 89 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Confidence 45566666666777777777777664211 1123344444455444322 34456666666666666666666665543
No 252
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=82.37 E-value=7.4 Score=28.67 Aligned_cols=90 Identities=11% Similarity=-0.071 Sum_probs=59.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAY---TFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~ 88 (175)
+|.-|...|++++|...++++..|. ..+...+..++-+.. .-+.+..++..+.+.|+-+... -|..++..+-.
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~D 96 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAED 96 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChH
Confidence 7888888999999999999998764 233444444444432 2356777888887666544443 35555555554
Q ss_pred CC-CchhHHHHHHHHHHh
Q 045063 89 LP-APERGKQVHALMIKG 105 (175)
Q Consensus 89 ~~-~~~~a~~~~~~m~~~ 105 (175)
.. +.+.|...+..+...
T Consensus 97 l~lDiP~a~~~La~~v~~ 114 (339)
T 1ug3_A 97 MEIDIPHVWLYLAELVTP 114 (339)
T ss_dssp HTTTCTTHHHHHHHHHGG
T ss_pred hhcCccchHHHHHHHHHH
Confidence 33 788888888888743
No 253
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=82.13 E-value=8 Score=24.97 Aligned_cols=61 Identities=8% Similarity=0.095 Sum_probs=48.6
Q ss_pred CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 75 TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 75 ~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
+..-+...++.....|+-++...+...+.. +.+|+....-.+..+|.+.|+..+|.+++.+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 444566778888888888888888888544 3567888888999999999999999888776
No 254
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=81.57 E-value=2.4 Score=24.79 Aligned_cols=35 Identities=14% Similarity=0.001 Sum_probs=24.3
Q ss_pred CCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCC
Q 045063 22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRN 56 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~ 56 (175)
.....+.|.++++.++.++..+|..++.++.+.|.
T Consensus 48 ~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 48 EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 35666677777777777777777777777766654
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.44 E-value=4.8 Score=26.54 Aligned_cols=60 Identities=3% Similarity=-0.141 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCH-------hhHHHHHHHHhcCCCchhHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHST-CLNLTA-------YTFTPVLGACSALPAPERGKQVHALMI 103 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~-------~t~~~ll~~~~~~~~~~~a~~~~~~m~ 103 (175)
+---+..+...|.++.|.-+.+-.... +..|+. .++..+-+++...+++..|...|++..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344456666677777777666664432 222331 245555667777777777777777743
No 256
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=81.44 E-value=6.9 Score=25.54 Aligned_cols=146 Identities=8% Similarity=0.021 Sum_probs=74.2
Q ss_pred hhhhcCCCChhHHHHHhhhcc-C---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcC
Q 045063 17 SIADALPKRYVYTHQVFDEIS-H---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSAL 89 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~ 89 (175)
+...+..|+.+.+..+++.-. . .+...++.|..+. +.|+. ++.+.+.+.|..++.. -.+. +...+..
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~ 82 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAV-HNNDI----EIAKALIDRGADINLQNSISDSP-YLYAGAQ 82 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHH-HHTCH----HHHHHHHHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH-HcCCH----HHHHHHHHcCCCCCCCCCCCCCH-HHHHHHc
Confidence 444566788888888887654 2 2334445555444 45553 3444455556665543 2333 3344455
Q ss_pred CCchhHHHHHHHHHHhCCCcch---HHHHHHHHHHHhcCChHHHHHHHHhc-c---CCCchhHHHHHHHHHhcCC-hHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEP---VVKTALMDMYSKYGLLGESVEAFKEI-E---FKDVVTWNALLSSFLRHGL-AKEA 161 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m-~---~~~~~~~~~li~~~~~~g~-~~~a 161 (175)
|+.+.+..+++. .+..++. .-. +.+...++.|+.+-+..+++.- . .+|..-++.|..+. ..|+ ...-
T Consensus 83 ~~~~~~~~Ll~~---~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~ 157 (201)
T 3hra_A 83 GRTEILAYMLKH---ATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLY 157 (201)
T ss_dssp TCHHHHHHHHHH---SCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHH
T ss_pred CCHHHHHHHHhc---cCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhH
Confidence 666555544432 2222222 122 2344456778888777777764 2 22333444555443 3333 2222
Q ss_pred HHHHHHHHhccc
Q 045063 162 FGVFQAMTRERV 173 (175)
Q Consensus 162 ~~~~~~m~~~g~ 173 (175)
.++++-+.+.|.
T Consensus 158 ~~~v~~Ll~~ga 169 (201)
T 3hra_A 158 QDIVKLLMENGA 169 (201)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 444455555443
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.73 E-value=16 Score=27.69 Aligned_cols=92 Identities=13% Similarity=0.017 Sum_probs=63.1
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhcCCCCCH-----hhHHHHHHHHhcCCCchhHHHHHHHHHH--hCCCcchHHHHHHH
Q 045063 46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTA-----YTFTPVLGACSALPAPERGKQVHALMIK--GGTDSEPVVKTALM 118 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-----~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li 118 (175)
-+..-|...|++.+|.+++.++.+.--+.|. ..+..-+..+...++..++.+.+..... ..+.+++.+...+=
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 5788899999999999999999875222222 2566677888899999999999988774 23334443332221
Q ss_pred ----HHHH-hcCChHHHHHHHHhc
Q 045063 119 ----DMYS-KYGLLGESVEAFKEI 137 (175)
Q Consensus 119 ----~~~~-~~g~~~~a~~~~~~m 137 (175)
-.+. ..++|..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 2234 678888887766554
No 258
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.62 E-value=11 Score=25.80 Aligned_cols=146 Identities=10% Similarity=0.030 Sum_probs=64.8
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~ 89 (175)
.|...+..|+.+.+..+++.-..+ +...++.+..+ ++.|+. ++++.+.+.|..++.. -++.+ ...++.
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~ 115 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA-AIAGSV----KLLKLFLSKGADVNECDFYGFTAF-MEAAVY 115 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH-HHHTCH----HHHHHHHHTTCCTTCBCTTCCBHH-HHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCCccCcccCCHH-HHHHHh
Confidence 455555666777666666653322 22223333333 233443 3334444455544432 22233 333344
Q ss_pred CCchhHHHHHHHHHHhCCCcchHH------------HHHHHHHHHhcCChHHHHHHHHhcc----CCCchhHHHHHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVV------------KTALMDMYSKYGLLGESVEAFKEIE----FKDVVTWNALLSSFL 153 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~------------~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~li~~~~ 153 (175)
|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++... .+|..-++.+..+ +
T Consensus 116 ~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~ 190 (285)
T 1wdy_A 116 GKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-L 190 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-H
T ss_pred CCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-H
Confidence 4433 3444445555443220 1134445566777777777776522 1222233333333 3
Q ss_pred hcCChHHHHHHHHHHHhcc
Q 045063 154 RHGLAKEAFGVFQAMTRER 172 (175)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g 172 (175)
..|+.....++++-+.+.|
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g 209 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHG 209 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTT
T ss_pred HccccchHHHHHHHHHHcC
Confidence 3444333344444444444
No 259
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=80.48 E-value=10 Score=25.14 Aligned_cols=138 Identities=8% Similarity=-0.023 Sum_probs=96.6
Q ss_pred CCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHH
Q 045063 23 PKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALM 102 (175)
Q Consensus 23 ~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m 102 (175)
.++.+....+.+.+..++...-...+..+.+.|. .++...+.++... ++...-...+.++.+.+..+....+...+
T Consensus 15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 4566777777777888888888888899998887 4555555555543 56666667777888878765555554433
Q ss_pred HHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 103 IKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 103 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
+ .++..+-...+.+.++.|+.+....+.+.+..+|...-...+.++.+.|.. .+...+.++.
T Consensus 91 -~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l 152 (211)
T 3ltm_A 91 -K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKAL 152 (211)
T ss_dssp -T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHT
T ss_pred -c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 2 467777778888889999877777777777778877777778888887764 3444444443
No 260
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=80.17 E-value=11 Score=26.45 Aligned_cols=140 Identities=8% Similarity=-0.066 Sum_probs=66.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~~~~ 92 (175)
.|...+..|+.+.+..+++.-..++...-.+.+..-++.|+.+-+.- +.+.|..++.. -++.| ...+..|..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L-~~A~~~g~~ 108 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTAL-YYAVDSGNM 108 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHH-HHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHH-HHHHHcCCH
Confidence 45555567777777777776433322222233334445565443333 33345544432 22333 333444554
Q ss_pred hhHHHHHHHHHHhCCCcchHH---HHHHHHHHHhcCChHHHHHHHHhccCC-Cc-hhHHHHHHHHHhcCChHHHHHHH
Q 045063 93 ERGKQVHALMIKGGTDSEPVV---KTALMDMYSKYGLLGESVEAFKEIEFK-DV-VTWNALLSSFLRHGLAKEAFGVF 165 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~-~~-~~~~~li~~~~~~g~~~~a~~~~ 165 (175)
+-+ +.+.+.|..++... |.+.+...+..|..+-+..+++.-... +. .-++.|. ..+..|+.+.+.-++
T Consensus 109 ~~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 109 QTV----KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIH-ITIKNGHVDMMILLL 181 (285)
T ss_dssp HHH----HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHH-HHHHTTCHHHHHHHH
T ss_pred HHH----HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHH-HHHHcChHHHHHHHH
Confidence 433 33344455444332 234555556677776666666653322 22 2233333 335566655444444
No 261
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=80.13 E-value=9.1 Score=24.31 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=31.5
Q ss_pred HHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063 67 MHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL 127 (175)
Q Consensus 67 m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 127 (175)
+++.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.=--++.+...|-+
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 445566555432 223334444455566666666666655445555444445555555544
No 262
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=79.84 E-value=7.3 Score=27.20 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=53.1
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhc--CCCC----CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 46 SQLFSYTRSRNFPATWALFCYMHST--CLNL----TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m~~~--~~~~----~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
--|..+....++++|.++.++-.+. ++++ ........++.-.....-..+..+.+.+.. .++...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3466777788888888888876542 3332 112233334444433333444455444422 445566677778
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 045063 120 MYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~ 138 (175)
...+.|+-++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 8888888888888887654
No 263
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=77.98 E-value=0.036 Score=43.41 Aligned_cols=117 Identities=11% Similarity=-0.008 Sum_probs=89.7
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMD 119 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 119 (175)
....|.-|-.+..+.|+..+|.+-|-+. -|...|.-++.++.+.|.+++-...+....+. .-+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567999999999999999988766432 24557899999999999999999887776654 345566689999
Q ss_pred HHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 045063 120 MYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
+|++.++..+.++++. .||+.--..+-+-|...|..+.|.-+|..
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGG
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHh
Confidence 9999999988776655 46666666777777777777766555543
No 264
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=76.95 E-value=4.2 Score=25.45 Aligned_cols=137 Identities=9% Similarity=-0.074 Sum_probs=75.8
Q ss_pred hhhhcCCCChhHHHHHhhhcc-CC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcC
Q 045063 17 SIADALPKRYVYTHQVFDEIS-HG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSAL 89 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~-~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~ 89 (175)
+...++.|+.+.+..+++... .+ +...++.+.. +..|+.+- .+.+.+.|..++.. -.+.+. ..+..
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~ 78 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMFGSTAI----ALELLKQGASPNVQDTSGTSPVH-DAART 78 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCTTCHHH----HHHHHHTTCCTTCCCTTSCCHHH-HHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH--HHcCCHHH----HHHHHHCCCCCCCcCCCCCCHHH-HHHHc
Confidence 344567789999999998821 22 3334444444 66777553 34444556655443 233444 44445
Q ss_pred CCchhHHHHHHHHHHhCCCcchH--HHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPV--VKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
|+.+.+ +.+.+.|..++.. .-.+.+...++.|+.+-+..+++. ..+ |..-++.+-. .++.|+.+.+.-+
T Consensus 79 ~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~-A~~~~~~~~v~~L 152 (156)
T 1bd8_A 79 GFLDTL----KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLEL-ALQRGAQDLVDIL 152 (156)
T ss_dssp TCHHHH----HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHH-HHHSCCHHHHHHH
T ss_pred CcHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHH-HHHcCcHHHHHHH
Confidence 665444 4455566655432 112344555778888888888776 433 3333344444 3577776665555
Q ss_pred HH
Q 045063 165 FQ 166 (175)
Q Consensus 165 ~~ 166 (175)
++
T Consensus 153 l~ 154 (156)
T 1bd8_A 153 QG 154 (156)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.76 E-value=4.5 Score=24.41 Aligned_cols=84 Identities=6% Similarity=-0.174 Sum_probs=54.0
Q ss_pred CChhHHHHHhhhccCCCchhHHHHH--HHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHH
Q 045063 24 KRYVYTHQVFDEISHGDLSSLNSQL--FSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHAL 101 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~~~~~~~~~li--~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~ 101 (175)
+..++|..+-+.+...+..-...|| .++...|++++|+.+.+.. ..||...|..|-. -+.|-.+++...+..
T Consensus 20 H~HqEA~tIAdwL~~~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQDEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4567777777776533225555555 4566788888888877766 4688887777643 356666777777666
Q ss_pred HHHhCCCcchHHH
Q 045063 102 MIKGGTDSEPVVK 114 (175)
Q Consensus 102 m~~~~~~~~~~~~ 114 (175)
+..+| .|....|
T Consensus 94 la~sg-~p~~q~F 105 (115)
T 2uwj_G 94 LGGSS-DPALADF 105 (115)
T ss_dssp HHTCS-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 66554 3444443
No 266
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=76.48 E-value=13 Score=24.24 Aligned_cols=72 Identities=6% Similarity=-0.011 Sum_probs=47.6
Q ss_pred cchHHHHHHHH-HhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHh--CCCcchHHHHHHHHHHHhcCChHH
Q 045063 57 FPATWALFCYM-HSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKG--GTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 57 ~~~a~~l~~~m-~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
.+.+++-+.+. ++.|++++.. =..+++.+.+.+.+..|.++++.+.+. +...+..|.=--++.+...|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 35566666664 4568887653 345667777777888888888888877 655666544444567777775543
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.79 E-value=11 Score=22.81 Aligned_cols=61 Identities=8% Similarity=0.018 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 59 ATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 59 ~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
+..+-+...-...+.|+.....+.+.+|.+.+++..|..+++-.+.. +.+...+|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 55555566666678899999999999999999999999999988743 33445567776643
No 268
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=75.77 E-value=7.5 Score=23.03 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=39.2
Q ss_pred HHhhcCCCcchhhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcC
Q 045063 5 IRMTNFPAKTCISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTC 71 (175)
Q Consensus 5 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~ 71 (175)
++..|+.+..-.=...+..-..+.|.++++.++.++...|..++.++.+ .....+.+..-...|
T Consensus 30 L~~~~VLt~~~~e~I~~~~t~~~k~~~Lld~L~~rG~~Af~~F~~aL~~---~~~La~~L~~~~~~~ 93 (100)
T 3crd_A 30 LYQEGILTENHIQEINAQTTGLRKTMLLLDILPSRGPKAFDTFLDSLQE---FPWVREKLKKAREEA 93 (100)
T ss_dssp HHHHTSSCHHHHHHHTTCSSSHHHHHHHHHHTTTSCSSCHHHHHHHCTT---HHHHHHHHHHHHHHT
T ss_pred HHHCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHh---CHHHHHHHHhhcccc
Confidence 3444443333322333345677888888888888888888888888864 444444555444433
No 269
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=75.46 E-value=6.5 Score=28.64 Aligned_cols=14 Identities=0% Similarity=-0.199 Sum_probs=6.9
Q ss_pred HhcCChHHHHHHHH
Q 045063 122 SKYGLLGESVEAFK 135 (175)
Q Consensus 122 ~~~g~~~~a~~~~~ 135 (175)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 44455555444444
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.00 E-value=22 Score=25.98 Aligned_cols=118 Identities=12% Similarity=0.097 Sum_probs=73.0
Q ss_pred hhhcCCCChhHHHHHhhhccC-----CCc-hhH---HHHHHHHHhCCCcchHHHH----HHHHHhcCCCCCHhhHHHHHH
Q 045063 18 IADALPKRYVYTHQVFDEISH-----GDL-SSL---NSQLFSYTRSRNFPATWAL----FCYMHSTCLNLTAYTFTPVLG 84 (175)
Q Consensus 18 ~~~~~~~~~~~a~~~f~~~~~-----~~~-~~~---~~li~~~~~~g~~~~a~~l----~~~m~~~~~~~~~~t~~~ll~ 84 (175)
......|++=+|++.++.+-. .+. .+- ..-...+.+.|....|-++ .+...+.+++++..+..-++.
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 334456777778877776532 111 111 1222334456777666665 444456689999888888888
Q ss_pred HHhcCCC-chhHHHHHHHHH----HhCC--CcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063 85 ACSALPA-PERGKQVHALMI----KGGT--DSEPVVKTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 85 ~~~~~~~-~~~a~~~~~~m~----~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~ 135 (175)
.+..... ...-..+...++ +.|- .-|......+-..|.+.|++.+|+..|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 8776432 222233444444 3322 2367788999999999999999999775
No 271
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=74.36 E-value=4.5 Score=29.51 Aligned_cols=61 Identities=7% Similarity=0.021 Sum_probs=36.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCC---chhHHHHHHHHHhCCC--cchHHHHHHHHHhcCCCCCH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGD---LSSLNSQLFSYTRSRN--FPATWALFCYMHSTCLNLTA 76 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~l~~~m~~~~~~~~~ 76 (175)
+|.-|...|+.++|.+.++++..|. ..++..+..++-+.++ -+.+.+++..+.+.|+-+..
T Consensus 172 lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 172 LLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 6666666777777777777776552 2334555555555432 34566666666655554433
No 272
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=73.38 E-value=8.5 Score=22.69 Aligned_cols=66 Identities=9% Similarity=0.051 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHH
Q 045063 97 QVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 97 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
.+++.+.+.|+ .+......+-. .......+.|.++++.++.++...|..++.++...|+.+-|..+
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHHH
Confidence 35566666664 23333333322 00125678899999999999999999999998877876666544
No 273
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=72.13 E-value=11 Score=25.13 Aligned_cols=22 Identities=9% Similarity=-0.029 Sum_probs=13.6
Q ss_pred hhhhhcCCCChhHHHHHhhhcc
Q 045063 16 ISIADALPKRYVYTHQVFDEIS 37 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~ 37 (175)
.+...++.|+++.+..+++.-.
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHcCC
Confidence 5555566667766666666544
No 274
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.24 E-value=51 Score=28.58 Aligned_cols=151 Identities=10% Similarity=0.050 Sum_probs=97.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC--------------------------CchhHHHHHHHHHhCCCcchHHHHHHHHHh
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG--------------------------DLSSLNSQLFSYTRSRNFPATWALFCYMHS 69 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~a~~l~~~m~~ 69 (175)
+-.++...|++++|...|.+.... -..-|..++.-|.+.|.++.+.++-....+
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445677899999999999876320 011268888899999999999888776655
Q ss_pred cC-CCC-CH--hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHH------------HHH
Q 045063 70 TC-LNL-TA--YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGES------------VEA 133 (175)
Q Consensus 70 ~~-~~~-~~--~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a------------~~~ 133 (175)
.. -.. +. ..|..++++....|++++|...+-.+.....+ ....+.||...+..|..+.- .++
T Consensus 928 ~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~I 1005 (1139)
T 4fhn_B 928 SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNL 1005 (1139)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHH
T ss_pred hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHH
Confidence 42 222 11 25889999999999999999998887654433 34566677777766665543 222
Q ss_pred HHhccC-----CCchhH-HHHHHHHHhcCChHHHHHH-HHHH
Q 045063 134 FKEIEF-----KDVVTW-NALLSSFLRHGLAKEAFGV-FQAM 168 (175)
Q Consensus 134 ~~~m~~-----~~~~~~-~~li~~~~~~g~~~~a~~~-~~~m 168 (175)
+..--+ .+..-| ..|=.-+...|++.+|..+ |+..
T Consensus 1006 L~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 1006 LERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 221110 122234 4444445577888777665 4443
No 275
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.72 E-value=5.9 Score=29.60 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=12.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG 39 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~ 39 (175)
+|.=|...|+.++|.+.++++..|
T Consensus 223 lL~EY~~s~D~~EA~~ci~EL~~p 246 (358)
T 3eiq_C 223 LLKEYLLSGDISEAEHCLKELEVP 246 (358)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHCCT
T ss_pred HHHHhccCCCHHHHHHHHHHccCC
Confidence 444444455555555555555443
No 276
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=70.37 E-value=18 Score=23.06 Aligned_cols=61 Identities=5% Similarity=0.037 Sum_probs=34.8
Q ss_pred HHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH
Q 045063 67 MHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG 128 (175)
Q Consensus 67 m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (175)
+++.|++++.. =..++..+...+.+-.|.++++.+.+.+...+..|.=--++.+...|-+.
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 45566665543 22344455555567777777777776665555555444556666666543
No 277
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=69.85 E-value=18 Score=22.85 Aligned_cols=68 Identities=9% Similarity=-0.131 Sum_probs=44.2
Q ss_pred CCCCCHhhHHHHHHHHhcCCC---chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 71 CLNLTAYTFTPVLGACSALPA---PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 71 ~~~~~~~t~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+-.|+..|--..-.++.++.. ..++..+++.+.+.+..-....+=-|.-++.+.|++++|.+..+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444566554455555665554 45777888887776521123344556678889999999998888876
No 278
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=69.29 E-value=18 Score=22.58 Aligned_cols=78 Identities=8% Similarity=-0.073 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH---HHHHHHhccCCCc-----hhHHHHHHHHHhcCChHHHHH
Q 045063 92 PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE---SVEAFKEIEFKDV-----VTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~-----~~~~~li~~~~~~g~~~~a~~ 163 (175)
+..++.-|..-...|. ++..+--.+.-++++++..++ +..+++...+.+. ...-.|--|+.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3445555555544444 677777777778888887776 8888888775542 122334557899999999999
Q ss_pred HHHHHHh
Q 045063 164 VFQAMTR 170 (175)
Q Consensus 164 ~~~~m~~ 170 (175)
.++.+.+
T Consensus 96 ~~~~lL~ 102 (126)
T 1nzn_A 96 YVRGLLQ 102 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.82 E-value=15 Score=24.52 Aligned_cols=143 Identities=6% Similarity=-0.112 Sum_probs=77.2
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-------CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh--HHHHHHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-------GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT--FTPVLGAC 86 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t--~~~ll~~~ 86 (175)
.|...++.|+.+.+..+++.+.+ .|...++.+..+ +..|+.+ +++.+.+.|..++... -.+.+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA-VITTLPS----VVRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH-HHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence 45566678999999999875432 233344554444 4566653 4455555676665432 22344455
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcc---hHHHHHHHHHHHhcCChHHHHHHHHhccCCCc----hhHHHHHHHHHhcCChH
Q 045063 87 SALPAPERGKQVHALMIKGGTDSE---PVVKTALMDMYSKYGLLGESVEAFKEIEFKDV----VTWNALLSSFLRHGLAK 159 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~li~~~~~~g~~~ 159 (175)
+..|+.+.+..+++.-...++.++ ..-+ +.+...++.|..+-+..+++.-...+. .-++.| ...++.|+.+
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~~~~~ 164 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGL-TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL-IHAVENNSLS 164 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTCHH
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCC-cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHH-HHHHHcCCHH
Confidence 566776665555443221111222 2222 334455678888888888876443322 223334 4446778766
Q ss_pred HHHHHH
Q 045063 160 EAFGVF 165 (175)
Q Consensus 160 ~a~~~~ 165 (175)
.+..++
T Consensus 165 ~v~~Ll 170 (241)
T 1k1a_A 165 MVQLLL 170 (241)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 280
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=68.21 E-value=13 Score=20.68 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHhcCCCCCHhhHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH
Q 045063 66 YMHSTCLNLTAYTFTPVLGACSALP-APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG 128 (175)
Q Consensus 66 ~m~~~~~~~~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (175)
.+.+.|++++..- ..++..+...+ .+-.+.++++.+.+.+...+..|.--.++.+.+.|.+.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 4566788777644 45666776665 67788888888887766667777777777777777654
No 281
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=68.06 E-value=18 Score=22.94 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCh
Q 045063 67 MHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLL 127 (175)
Q Consensus 67 m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 127 (175)
+++.|++++..= ..+++.+...+ ...|.++++.+.+.+...+..|.=--++.+...|-+
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344556555431 12233333333 556666666666555444544433334555555543
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.02 E-value=37 Score=25.74 Aligned_cols=92 Identities=10% Similarity=-0.049 Sum_probs=66.1
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCc--chHHHHHHHHHHHhcCChHHHHHHHHhcc-----CCCchhHHHH--
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDS--EPVVKTALMDMYSKYGLLGESVEAFKEIE-----FKDVVTWNAL-- 148 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~~~~~l-- 148 (175)
+..-+-+.+.+.|+.+.|...+.++......+ -...+-.+|..+...+++..+...+.... .+|....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 67778888999999999999999998653333 34578888899999999999888887764 2232222211
Q ss_pred --HHHHHhcCChHHHHHHHHHHH
Q 045063 149 --LSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 149 --i~~~~~~g~~~~a~~~~~~m~ 169 (175)
...+...+++..|...|.+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 111335688999988887754
No 283
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=67.86 E-value=15 Score=22.74 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 45 NSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 45 ~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
-.++..+...+..-.|.++++.+.+.+...+..|.--.|+.+.+.|
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3455555555556666666666666555555555545555555555
No 284
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=67.81 E-value=26 Score=23.81 Aligned_cols=62 Identities=5% Similarity=-0.070 Sum_probs=45.1
Q ss_pred HHHHHHHh---CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-----chhHHHHHHHHHHhCC
Q 045063 46 SQLFSYTR---SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-----PERGKQVHALMIKGGT 107 (175)
Q Consensus 46 ~li~~~~~---~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~ 107 (175)
-+|+++.| ..|.+.|+--+.+|++.|..|....--.++-+.-..|. +..|...++....-|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 35666665 47889999999999999999888887777777766663 3455555565555554
No 285
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=67.68 E-value=21 Score=22.81 Aligned_cols=76 Identities=8% Similarity=0.082 Sum_probs=52.8
Q ss_pred HHHHHHHHHhCCCcc--hHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFP--ATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDM 120 (175)
Q Consensus 44 ~~~li~~~~~~g~~~--~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 120 (175)
|+.=-..|...-+++ +..+-+...-...+.|+.......+.+|-+.+++..|..+++-.+.. +.+...+|..+++-
T Consensus 54 FdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 54 FDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred HHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 333344444433322 44444455555678899999999999999999999999999998754 44556678777653
No 286
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=67.59 E-value=12 Score=23.49 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 46 SQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 46 ~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
.++..+...+.+-.|.++++.+.+.+...+..|.--.|+.+.+.|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344444444444455555555544444444443333344444443
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.48 E-value=27 Score=23.87 Aligned_cols=49 Identities=10% Similarity=0.048 Sum_probs=30.4
Q ss_pred hcCCCchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHH
Q 045063 87 SALPAPERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 87 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~ 135 (175)
+..+..+....+.+.+.+.|..++... -.+.+...++.|..+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 334555555677777777776665431 2344555667788887777777
No 288
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=67.23 E-value=16 Score=21.15 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHH
Q 045063 95 GKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 95 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a 161 (175)
...+++.+.+.|+- +..-+..+-. .....++|.++++.+..++...|..++.++...|...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 44566666666652 3333333333 256777888888888888888888888888777764444
No 289
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=66.17 E-value=28 Score=23.68 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=44.1
Q ss_pred HHHHHHHh---CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-----chhHHHHHHHHHHhCC
Q 045063 46 SQLFSYTR---SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-----PERGKQVHALMIKGGT 107 (175)
Q Consensus 46 ~li~~~~~---~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~ 107 (175)
-+|+++.| ..+.+.|+--+.+|.+.| .|....--.++-+.-..|. +..|...++....-|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 35666665 478899999999999999 8877777777777777763 3455566666666665
No 290
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=64.33 E-value=25 Score=22.45 Aligned_cols=144 Identities=12% Similarity=0.044 Sum_probs=76.0
Q ss_pred ChhHHHHHhhhccCCCchhHHHHHHHHHhCC----CcchHHHHHHHHHhc-CCCCCHhhHHHHHHHHhcCCCchhHHHHH
Q 045063 25 RYVYTHQVFDEISHGDLSSLNSQLFSYTRSR----NFPATWALFCYMHST-CLNLTAYTFTPVLGACSALPAPERGKQVH 99 (175)
Q Consensus 25 ~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g----~~~~a~~l~~~m~~~-~~~~~~~t~~~ll~~~~~~~~~~~a~~~~ 99 (175)
++....+.|+..-..+..++.-+..++...| ..+.+..+|..+-.. .-..+..-|..++.........+....+|
T Consensus 19 ~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~Ef~~~~~~~~~~~~~~~~~~~f 98 (183)
T 1s6c_A 19 ELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTF 98 (183)
T ss_dssp HHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3445555566543334555555555554443 234556677766433 22344444555555444444445666666
Q ss_pred HHHHHhC-CCcchHHHHHHHHHH-HhcCC-----------hHHHHHHHHhccC--CCchhHHHHHHHHHhcCChHHHHHH
Q 045063 100 ALMIKGG-TDSEPVVKTALMDMY-SKYGL-----------LGESVEAFKEIEF--KDVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 100 ~~m~~~~-~~~~~~~~~~li~~~-~~~g~-----------~~~a~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
..+-..| -..+..-+..++... ...|. -+.+.++|+.+.. ....+|.-++..+.+...+-.....
T Consensus 99 ~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~l~~ 178 (183)
T 1s6c_A 99 NLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQL 178 (183)
T ss_dssp HHHCTTCSSCEEHHHHHHHHHHHHHHTC-----------CHHHHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHHHH
T ss_pred HHhCCCCCCeEcHHHHHHHHHHHHHHhccccCcCccHHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHhcChHHHHHHHH
Confidence 6654322 123443333333322 11242 2667788887753 3567888888887776666666666
Q ss_pred HHHH
Q 045063 165 FQAM 168 (175)
Q Consensus 165 ~~~m 168 (175)
|..+
T Consensus 179 ~d~~ 182 (183)
T 1s6c_A 179 FQNV 182 (183)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 6543
No 291
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=64.30 E-value=22 Score=23.64 Aligned_cols=19 Identities=5% Similarity=-0.214 Sum_probs=9.1
Q ss_pred hhhhcCCCChhHHHHHhhh
Q 045063 17 SIADALPKRYVYTHQVFDE 35 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~ 35 (175)
|...++.|+++.+..+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344444555555555543
No 292
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=63.90 E-value=34 Score=23.82 Aligned_cols=146 Identities=10% Similarity=-0.014 Sum_probs=83.0
Q ss_pred hhhhhcCCCChhHHHHHhhhcc-C---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEIS-H---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~ 88 (175)
.|...++.|+.+.+..+++.-. . .+...++.+..+.........-.++...+.+.|..++.. -.+.|. ..+.
T Consensus 114 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh-~A~~ 192 (276)
T 4hbd_A 114 ALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALM-LAVS 192 (276)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHH-HHHH
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHH-HHHH
Confidence 4555567888888888888654 2 345556666665554444455666666666666444332 233343 3445
Q ss_pred CCCchhHHHHHHHHHHhCCCcchH---HHHHHHHHHHhcCChHHHHHHHHh-cc---CCCchhHHHHHHHHHhcCChHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPV---VKTALMDMYSKYGLLGESVEAFKE-IE---FKDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~-m~---~~~~~~~~~li~~~~~~g~~~~a 161 (175)
.|+.+ +.+.+.+.|..++.. -++. +...+..|..+-+..+++. -. .+|..-++.|..+ ++.|+.+.+
T Consensus 193 ~g~~~----~v~~Ll~~gad~n~~d~~G~Tp-Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A-~~~g~~~iv 266 (276)
T 4hbd_A 193 HGRVD----VVKALLACEADVNVQDDDGSTA-LMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVA-LDAGQSEIA 266 (276)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHH-HHHTCHHHH
T ss_pred cCCHH----HHHHHHhCCCCCCCCCCCCCCH-HHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHH-HHcCCHHHH
Confidence 56544 445555667655543 2333 4445777888877777762 21 2233334444443 566777777
Q ss_pred HHHHHHH
Q 045063 162 FGVFQAM 168 (175)
Q Consensus 162 ~~~~~~m 168 (175)
.-+++++
T Consensus 267 ~~Ll~~~ 273 (276)
T 4hbd_A 267 SMLYSRM 273 (276)
T ss_dssp HHHHHHC
T ss_pred HHHHhcc
Confidence 6666543
No 293
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=63.81 E-value=8.1 Score=20.65 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHhcCCCCCHhhHHHHHHHH-hcCC------C-chhHHHHHHHH
Q 045063 57 FPATWALFCYMHSTCLNLTAYTFTPVLGAC-SALP------A-PERGKQVHALM 102 (175)
Q Consensus 57 ~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~-~~~~------~-~~~a~~~~~~m 102 (175)
.++|.+.|.+|++..-.++.-||.-.|..+ ++.. + +.+-.++|+..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 368888999987775556667888888888 5543 2 44445555543
No 294
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=63.76 E-value=27 Score=22.61 Aligned_cols=58 Identities=12% Similarity=-0.047 Sum_probs=45.4
Q ss_pred CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 38 HGDLSSLNSQLFSYTRSRNFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 38 ~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
-+-+.--..++..+.+.+.+-.|.++++.+.+. +...+..|.=--|+.+.+.|-+.+.
T Consensus 29 ~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 29 LKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp CCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 356777888999999988899999999999887 7777777666666777777766543
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=63.41 E-value=18 Score=24.16 Aligned_cols=143 Identities=13% Similarity=-0.010 Sum_probs=78.4
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH---hhHHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA---YTFTPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~---~t~~~ll~~~~~~ 89 (175)
.|...+..|+.+-+..+++.-..+ +...++.+.. .++.|+.+-+..+++.-...++.++. .-.+.+. ..++.
T Consensus 49 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~ 126 (241)
T 1k1a_A 49 PLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL-ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNT 126 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH-HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHc
Confidence 566667788999888888765443 3333444444 44667765555554443322223332 2333443 33444
Q ss_pred CCchhHHHHHHHHHHhCCCcchHH---HHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVV---KTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
|.. ++++.+.+.|..++... -.+.+...++.|+.+-+..+++.-..+ |..-++.|-. .++.|+.+.+..
T Consensus 127 ~~~----~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v~~ 201 (241)
T 1k1a_A 127 ECQ----ETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHS-ASGRGLLPLVRT 201 (241)
T ss_dssp TCH----HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHH-HHHHTCHHHHHH
T ss_pred CCH----HHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH-HHHcCCHHHHHH
Confidence 554 44555566676655422 234556667889988888888763333 3333444444 466777664444
Q ss_pred HH
Q 045063 164 VF 165 (175)
Q Consensus 164 ~~ 165 (175)
++
T Consensus 202 Ll 203 (241)
T 1k1a_A 202 LV 203 (241)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=62.45 E-value=17 Score=24.33 Aligned_cols=21 Identities=5% Similarity=-0.137 Sum_probs=13.7
Q ss_pred hhhhhcCCCChhHHHHHhhhc
Q 045063 16 ISIADALPKRYVYTHQVFDEI 36 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~ 36 (175)
.+...+..|+.+.+..+++.-
T Consensus 47 ~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 47 PLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHHhCCHHHHHHHHhCC
Confidence 455555667777777777653
No 297
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=62.17 E-value=27 Score=22.24 Aligned_cols=61 Identities=10% Similarity=0.165 Sum_probs=34.1
Q ss_pred HHhcCCCCCHhhHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChH
Q 045063 67 MHSTCLNLTAYTFTPVLGACSALP-APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLG 128 (175)
Q Consensus 67 m~~~~~~~~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (175)
+++.|++++..=. .++..+...+ .+-.|.++++.+.+.+...+..|.=--++.+...|-+.
T Consensus 8 l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 8 LKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4556666655322 3344444444 56667777777766655555554444455666666543
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.02 E-value=27 Score=26.02 Aligned_cols=61 Identities=16% Similarity=0.261 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhccCCC---chhHHHHHHHHHhcCC--hHHHHHHHHHHHhccc
Q 045063 113 VKTALMDMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSSFLRHGL--AKEAFGVFQAMTRERV 173 (175)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~ 173 (175)
..+.++.=|...|+.++|.+.++++..|. .++..++..++-+.++ .+...+++..+...|+
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gl 284 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 284 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 56889999999999999999999999774 3355666666666543 4567788888887765
No 299
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=61.67 E-value=30 Score=24.74 Aligned_cols=116 Identities=9% Similarity=-0.131 Sum_probs=75.4
Q ss_pred HHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC--CCcchHHHHHHHHHHHhcC
Q 045063 48 LFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGG--TDSEPVVKTALMDMYSKYG 125 (175)
Q Consensus 48 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g 125 (175)
+....+.|++++|++...+-++. -+.|...=..++.-+|-.|+++.|..=++...+.. ..|...+|..+|.+-...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R- 81 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR- 81 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH-
Confidence 34567888999999888887666 34566677778888899999999988777777642 233344666666653221
Q ss_pred ChHHHHHHHHhccCC-----CchhHHHHHHHHH--hcCChHHHHHHHHHHHh
Q 045063 126 LLGESVEAFKEIEFK-----DVVTWNALLSSFL--RHGLAKEAFGVFQAMTR 170 (175)
Q Consensus 126 ~~~~a~~~~~~m~~~-----~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 170 (175)
.++|.--..| ...--..|+.+.. ..|+.+.|.++-.+..+
T Consensus 82 -----~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 82 -----KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -----HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -----HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 2344433333 2223445666655 55999999888776644
No 300
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.51 E-value=48 Score=24.47 Aligned_cols=116 Identities=15% Similarity=0.093 Sum_probs=69.2
Q ss_pred hcCCCCh---hHHHHHhhhccC-----CCch-hH---HHHHHHHHhCCCcchHHHHH----HHHHhcCCCCCHhhHHHHH
Q 045063 20 DALPKRY---VYTHQVFDEISH-----GDLS-SL---NSQLFSYTRSRNFPATWALF----CYMHSTCLNLTAYTFTPVL 83 (175)
Q Consensus 20 ~~~~~~~---~~a~~~f~~~~~-----~~~~-~~---~~li~~~~~~g~~~~a~~l~----~~m~~~~~~~~~~t~~~ll 83 (175)
....|++ =+|++.++.+-. .+.. +- ..-...+.+.|....|-++- +...+.++++|..+..-|+
T Consensus 22 ~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 22 RIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3456777 677777665532 1111 11 11123344566666655555 4445678889988888888
Q ss_pred HHHhcCCCch-hHHHHHHHHH----HhC--CCcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063 84 GACSALPAPE-RGKQVHALMI----KGG--TDSEPVVKTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 84 ~~~~~~~~~~-~a~~~~~~m~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 135 (175)
..+.....-+ .-..+...++ +.| ..-|......+-..|.+.+++.+|+..|-
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8887665321 2222333333 333 33456677888899999999999988874
No 301
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=60.43 E-value=29 Score=21.83 Aligned_cols=142 Identities=6% Similarity=-0.095 Sum_probs=77.4
Q ss_pred hhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHhcCC
Q 045063 17 SIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACSALP 90 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~~~~ 90 (175)
|...++.|+++.+..+++.-.. ++...++.|..+. +.|+.+- .+.+.+.|..++.. .-.+.+...+..|
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS-AFGEIET----VRFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHH-HTTCHHH----HHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHH-HcCCHHH----HHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence 3445678999999999987543 3444555555554 5566543 34444455555432 1122344445566
Q ss_pred CchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVF 165 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 165 (175)
..+. .+.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ |..-++.+- ..++.|+.+.+.-++
T Consensus 81 ~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~-~A~~~~~~~~~~~L~ 155 (172)
T 3v30_A 81 YTDI----VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD-LAVALGYRKVQQVIE 155 (172)
T ss_dssp CHHH----HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred CHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH-HHHHhCcHHHHHHHH
Confidence 6544 444555566555421 123444556778888887777753332 222333333 335667766665555
Q ss_pred HHH
Q 045063 166 QAM 168 (175)
Q Consensus 166 ~~m 168 (175)
+..
T Consensus 156 ~~~ 158 (172)
T 3v30_A 156 NHI 158 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 302
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=60.20 E-value=20 Score=22.56 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=41.6
Q ss_pred HhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 68 HSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 68 ~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
++.|++++. .=..+++.+...+..-.|.++++.+.+.+...+..|.=--++.+...|.+.+
T Consensus 6 r~~g~r~T~-qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 6 PPVKGRATR-QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp ----CHHHH-HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCCCccCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 344554433 2346677788877889999999999988777777766556677788886544
No 303
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=60.03 E-value=34 Score=22.51 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=14.3
Q ss_pred hhhhhcCCCChhHHHHHhhhcc
Q 045063 16 ISIADALPKRYVYTHQVFDEIS 37 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~ 37 (175)
.|...++.|+.+.+..+++.-.
T Consensus 28 ~L~~A~~~g~~~~v~~Ll~~g~ 49 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKRLLEASA 49 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTC
T ss_pred hHHHHHHcCCHHHHHHHHHcCC
Confidence 4555566777777777776543
No 304
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.44 E-value=29 Score=21.57 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=38.4
Q ss_pred HHhcCCCCCHhhHHHHHHHHhcCC-CchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 67 MHSTCLNLTAYTFTPVLGACSALP-APERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 67 m~~~~~~~~~~t~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
+++.|++++..=. .+++.+...+ .+-.|.++++.+.+.+...+..|.=--++.+...|-+.+
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 5566777665422 3445555555 677788888888777666666655555666677665543
No 305
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=58.76 E-value=41 Score=23.06 Aligned_cols=65 Identities=9% Similarity=0.007 Sum_probs=47.7
Q ss_pred hHHHHHHHHHh---CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-----chhHHHHHHHHHHhCC
Q 045063 43 SLNSQLFSYTR---SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-----PERGKQVHALMIKGGT 107 (175)
Q Consensus 43 ~~~~li~~~~~---~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~ 107 (175)
.+--+|+++.| .++.+.|+--+.+|++.|..|....--.++-+.-..|. +..|...++....-|.
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34446677766 47899999999999999999988888888877776663 3455556666666665
No 306
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=58.72 E-value=36 Score=22.39 Aligned_cols=111 Identities=11% Similarity=-0.013 Sum_probs=66.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----CCc-------hhHHHHHHHHHhCCCcchHHHHHHHHHhc-CCCCCHh-hHHH
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----GDL-------SSLNSQLFSYTRSRNFPATWALFCYMHST-CLNLTAY-TFTP 81 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----~~~-------~~~~~li~~~~~~g~~~~a~~l~~~m~~~-~~~~~~~-t~~~ 81 (175)
=+......+.++.|.-+-+.+.. +++ .+...+-.++.+.|++..|...|++.++. ..-+... +.++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 45566678899999988887542 332 14677778999999999999999997543 2222221 2221
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccC
Q 045063 82 VLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 139 (175)
+- .....++ ......+...-=-+..+|.+.|++++|..+++.++.
T Consensus 106 ~~---~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 106 TG---NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cc---ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 10 0000010 011223334333378899999999999999999873
No 307
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=58.42 E-value=39 Score=22.91 Aligned_cols=118 Identities=10% Similarity=-0.124 Sum_probs=66.7
Q ss_pred HHHHHHhCCCcchHHHHHHHHHhcCCCCCH-------hhHHHHHHHHhc--CCCchhHHHHHHHHHHhCCC---------
Q 045063 47 QLFSYTRSRNFPATWALFCYMHSTCLNLTA-------YTFTPVLGACSA--LPAPERGKQVHALMIKGGTD--------- 108 (175)
Q Consensus 47 li~~~~~~g~~~~a~~l~~~m~~~~~~~~~-------~t~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~--------- 108 (175)
.+...++.|+.+.+..+++.+.+.|..++. .-.+.|..++.. .|+.+.+..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 344456778888888888877777766554 234444444432 37777777777654432211
Q ss_pred -cchHHHHHHHHHHHhcCChHHHHHHHHhccCCCch----------------hHHHHHHHHHhcCChHHHHHHHH
Q 045063 109 -SEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVV----------------TWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 109 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------------~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
.|..-++ .+...+..|+.+-+..+++.-...+.. -++.|..+ ++.|+.+.+.-+++
T Consensus 85 ~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A-~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 85 DEFYQGHS-ALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLA-ACTKQWDVVTYLLE 157 (256)
T ss_dssp STTTTTCC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHH-HHTTCHHHHHHHHH
T ss_pred cccccCCC-HHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHH-HHcCCHHHHHHHHh
Confidence 1122233 344456788888888777764333221 34445444 56777665544443
No 308
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=57.97 E-value=45 Score=23.28 Aligned_cols=112 Identities=8% Similarity=-0.023 Sum_probs=59.6
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh---HHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT---FTPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t---~~~ll~~~~~~ 89 (175)
.|...+..|+.+.+..+++.-..+ +...++.+..+. ..|+.+-+ +.+.+.|..++... +.+.+...+..
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~-~~g~~~~v----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~ 139 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV-DSGNMQTV----KLFVKKNWRLMFYGKTGWKTSFYHAVML 139 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTCHHHH----HHHHHHCGGGGGCSSSGGGSHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH-HcCCHHHH----HHHHhcCCCCCccCCCCCCCHHHHHHHc
Confidence 555666778888888888764432 333344444443 55554433 33333455555432 13444555556
Q ss_pred CCchhHHHHHHHHHHhCCCcchH-HHHHHHHHHHhcCChHHHHHHHHh
Q 045063 90 PAPERGKQVHALMIKGGTDSEPV-VKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
|..+-+ +.+.+.|..+... .-.+.+...+..|..+-+..+++.
T Consensus 140 ~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 140 NDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp TCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 665443 4444444333211 233445555677888777777665
No 309
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=56.89 E-value=18 Score=26.96 Aligned_cols=62 Identities=8% Similarity=-0.032 Sum_probs=41.8
Q ss_pred hhhhhhcCCCChhHHHHHhhhccCCC----chhHHHHHHHHHhCCC-cchHHHHHHHHHhcCCCCCH
Q 045063 15 CISIADALPKRYVYTHQVFDEISHGD----LSSLNSQLFSYTRSRN-FPATWALFCYMHSTCLNLTA 76 (175)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~f~~~~~~~----~~~~~~li~~~~~~g~-~~~a~~l~~~m~~~~~~~~~ 76 (175)
++|.=|...|++++|...++++..|+ .+.+..+..++-+... -+.+-.++..+...|+-+..
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~ 83 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSD 83 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 37888999999999999999998875 2345555555544321 24566677777666554433
No 310
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=56.61 E-value=21 Score=18.98 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=9.1
Q ss_pred cCChHHHHHHHHHHHhccc
Q 045063 155 HGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~ 173 (175)
.|+++.|...+.+|...+.
T Consensus 36 ~gdvd~aI~~LL~m~~~~~ 54 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPS 54 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCC
T ss_pred CCCHHHHHHHHHcCcCCCC
Confidence 3445555555555444433
No 311
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=56.43 E-value=38 Score=22.01 Aligned_cols=138 Identities=8% Similarity=-0.026 Sum_probs=93.9
Q ss_pred CCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHH
Q 045063 22 LPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHAL 101 (175)
Q Consensus 22 ~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~ 101 (175)
.......-..+++.+..+|...-...+.++.+.|.. .+...+.++.+ .++...-...+.++.+.+..+....+...
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~~~ 84 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLIKA 84 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHH
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 344555566677777888888888888888888874 44455555543 35666666677777777776555555443
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 102 MIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 102 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+ . .++...-...+.+.++.|+.+....+.+.+..+|..+-...+.++.+.|+. .+...+.++
T Consensus 85 l-~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~ 146 (201)
T 3ltj_A 85 L-K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKA 146 (201)
T ss_dssp T-T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHH
T ss_pred H-c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHH
Confidence 3 2 467777788888888989877777777777777877777777777777763 344444444
No 312
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=55.64 E-value=33 Score=21.15 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHH
Q 045063 81 PVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGE 129 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 129 (175)
.+++.+...+.+-.|.++++.+.+.+...+..|.=-.++.+...|-+.+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 5667777777889999999999988766677766666777888776543
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.38 E-value=42 Score=22.14 Aligned_cols=111 Identities=11% Similarity=0.047 Sum_probs=53.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh----hHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY----TFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~----t~~~ll~~~~~ 88 (175)
.|...++.|+++.+..+++.-... +....+ .+...++.|+.+- ++.+.+.|..++.. -.+. +...+.
T Consensus 12 ~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~-L~~A~~ 85 (240)
T 3eu9_A 12 DIVKATQYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTP-LHWATR 85 (240)
T ss_dssp CHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCH-HHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCCh-hHHHHH
Confidence 445567789999999998864432 322233 3444456666543 33344444433321 1223 333333
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHh
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 86 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 86 QGHLS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 44443 3344444454444221 11233444555666655555554
No 314
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.98 E-value=66 Score=24.29 Aligned_cols=152 Identities=10% Similarity=-0.057 Sum_probs=99.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccC--------CCchhHHHHHHHHHhC-CCcchHHHHHHHHHhcCCCCCHhhH------H
Q 045063 16 ISIADALPKRYVYTHQVFDEISH--------GDLSSLNSQLFSYTRS-RNFPATWALFCYMHSTCLNLTAYTF------T 80 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~--------~~~~~~~~li~~~~~~-g~~~~a~~l~~~m~~~~~~~~~~t~------~ 80 (175)
|...|.+.|+.++..+++..... +..-.-..+|..+... +..+.-.++..+..++.- -...+| .
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~l~~ 103 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 67788899999999999887754 1333467888888875 444555556555554311 111233 2
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhCCCcc-----hHHHHHHHHHHHhcCChHHHHHHHHhcc------CCCchhHHHH-
Q 045063 81 PVLGACSALPAPERGKQVHALMIKGGTDSE-----PVVKTALMDMYSKYGLLGESVEAFKEIE------FKDVVTWNAL- 148 (175)
Q Consensus 81 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~------~~~~~~~~~l- 148 (175)
-+..-+...|++.+|..++..+.+.--..| ..++-.-+..|...|++.++...+.... .++..+-..+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567888899999999999988886421212 3467777788889999988887776543 1222222221
Q ss_pred ---HHHHH-hcCChHHHHHHHHHH
Q 045063 149 ---LSSFL-RHGLAKEAFGVFQAM 168 (175)
Q Consensus 149 ---i~~~~-~~g~~~~a~~~~~~m 168 (175)
-..+. ..+++..|...|-+-
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 11244 688899998887664
No 315
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=54.33 E-value=36 Score=21.11 Aligned_cols=62 Identities=8% Similarity=-0.101 Sum_probs=44.3
Q ss_pred HhhhccCCCchhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 32 VFDEISHGDLSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 32 ~f~~~~~~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
.++.-.-+-+..-..++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+.+.|-+.
T Consensus 8 ~l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 333333355666778888888877 78899999999988877777777666677777666544
No 316
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.28 E-value=55 Score=23.40 Aligned_cols=109 Identities=11% Similarity=-0.012 Sum_probs=68.2
Q ss_pred hhcCCCChhHHHHHhhhc-cC-C-CchhHHHHHHHHHhCCCcchHHHHHHHHHhcC--CCCCHhhHHHHHHHHhcCCCch
Q 045063 19 ADALPKRYVYTHQVFDEI-SH-G-DLSSLNSQLFSYTRSRNFPATWALFCYMHSTC--LNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~-~~-~-~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~--~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
...+.|+++++.+....- +. | |...-..++.-+|=.|+++.|.+-++...+.. ..|...+|..+|.+=
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-------
Confidence 455889999988877654 32 3 78888999999999999999999988875442 223333555555432
Q ss_pred hHHHHHHHHHHhCCCcc-----hHHHHHHHHHHH--hcCChHHHHHHHHhc
Q 045063 94 RGKQVHALMIKGGTDSE-----PVVKTALMDMYS--KYGLLGESVEAFKEI 137 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~--~~g~~~~a~~~~~~m 137 (175)
..=.....-+-.|. ..-...++.+.. ..|+.++|.++-+..
T Consensus 79 ---~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 79 ---QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp ---HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 11122222222222 223455555554 469999887776665
No 317
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=53.78 E-value=41 Score=21.53 Aligned_cols=66 Identities=9% Similarity=-0.113 Sum_probs=40.9
Q ss_pred CCCHhhHHHHHHHHhcCCC---chhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 73 NLTAYTFTPVLGACSALPA---PERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 73 ~~~~~t~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
.|+..|--..-.++.++.. ..++..+++.+.+.+..-.....=-|.-++.|.|++++|.+..+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4565555555556666554 45677777777765422122233344567788888888888888765
No 318
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=53.49 E-value=46 Score=22.03 Aligned_cols=149 Identities=7% Similarity=-0.093 Sum_probs=81.4
Q ss_pred hhhhcCCCChhHHHHHhhhcc-C---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcC----CCCCHhhHHHHHHHHhc
Q 045063 17 SIADALPKRYVYTHQVFDEIS-H---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTC----LNLTAYTFTPVLGACSA 88 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~----~~~~~~t~~~ll~~~~~ 88 (175)
|..-++.|+.+.+..+++.-. . +|...++.|..+. +.|+.+-+..+++.-.... ...+..-.+.| ...+.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L-~~A~~ 84 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAA-LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL-HIAVI 84 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHH-HcCCHHHHHHHHHcCchhccccccccCCCCcCHH-HHHHH
Confidence 445567889999998888622 2 3444455554444 5667655555544321110 00111223334 34445
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHH---------------HHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHH
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVV---------------KTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLS 150 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~ 150 (175)
.|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ |..-++.|..
T Consensus 85 ~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~ 160 (232)
T 2rfa_A 85 NQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHI 160 (232)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred cCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 56654 4445555666555431 233455567788888888777763332 3333444443
Q ss_pred HHHhcCChHHHHHHHHHHHhcc
Q 045063 151 SFLRHGLAKEAFGVFQAMTRER 172 (175)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g 172 (175)
.+..|+.+.+..+++-+.+.|
T Consensus 161 -A~~~~~~~~~~~i~~~Ll~~g 181 (232)
T 2rfa_A 161 -LILQPNKTFACQMYNLLLSYD 181 (232)
T ss_dssp -HHTCSCHHHHHHHHHHHHHTT
T ss_pred -HHHcCChHHHHHHHHHHHhcC
Confidence 467788887777777766655
No 319
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.45 E-value=49 Score=22.38 Aligned_cols=117 Identities=10% Similarity=-0.108 Sum_probs=66.3
Q ss_pred HHHHHhCCCcchHHHHHHHHHhcCCCCCHhh-------HHHHHHHHh--cCCCchhHHHHHHHHHHhC---------C-C
Q 045063 48 LFSYTRSRNFPATWALFCYMHSTCLNLTAYT-------FTPVLGACS--ALPAPERGKQVHALMIKGG---------T-D 108 (175)
Q Consensus 48 i~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~m~~~~---------~-~ 108 (175)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|..+.+..+++.-...+ + .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3444577888888888887777776666433 345554442 6688887777776543311 0 0
Q ss_pred cchHHHHHHHHHHHhcCChHHHHHHHHhccCCCc-----------------hhHHHHHHHHHhcCChHHHHHHHH
Q 045063 109 SEPVVKTALMDMYSKYGLLGESVEAFKEIEFKDV-----------------VTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 109 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------------~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
.|..-++ .+...+..|+.+-+..+++.-..++. .-++.|..+ +..|+.+.+..+++
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A-~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA-ACTNQPHIVHYLTE 161 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHH-HHTTCHHHHHHHHH
T ss_pred cccCCCC-HHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHH-HHcCCHHHHHHHHh
Confidence 0112223 34445677888887777775433322 233444443 66777655544443
No 320
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.28 E-value=28 Score=23.69 Aligned_cols=133 Identities=7% Similarity=-0.144 Sum_probs=71.7
Q ss_pred hhhhhcCCCChhHHHHHhhhcc----CCC-------chhHHHHHHHHH--hCCCcchHHHHHHHHHhc---------CCC
Q 045063 16 ISIADALPKRYVYTHQVFDEIS----HGD-------LSSLNSQLFSYT--RSRNFPATWALFCYMHST---------CLN 73 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~----~~~-------~~~~~~li~~~~--~~g~~~~a~~l~~~m~~~---------~~~ 73 (175)
.|...++.|+.+....+++.+. ..+ ..-++.|..+.. +.|+.+-+.-+++.-... .+.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 3445567788888777777432 111 234566666653 567766666666553221 111
Q ss_pred C-CHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHH----------------HHHHHHHHHhcCChHHHHHHHH-
Q 045063 74 L-TAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVV----------------KTALMDMYSKYGLLGESVEAFK- 135 (175)
Q Consensus 74 ~-~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~~- 135 (175)
. |..-++.| ...+..|+.+- .+.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 88 ~~d~~g~t~L-~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 88 DVYYRGQTAL-HIAIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp CSSEESBCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred ccccCCCCHH-HHHHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 1 11223333 34445566554 444555676666543 2345556678899888888888
Q ss_pred --hcc---CCCchhHHHHHHHHH
Q 045063 136 --EIE---FKDVVTWNALLSSFL 153 (175)
Q Consensus 136 --~m~---~~~~~~~~~li~~~~ 153 (175)
.-. .+|..-++.|..+..
T Consensus 163 ~~~ga~~~~~d~~g~TpLh~A~~ 185 (260)
T 3jxi_A 163 GHKQADLRRQDSRGNTVLHALVA 185 (260)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHH
T ss_pred cccCCCCcccCCCCCcHHHHHHH
Confidence 222 234445556655543
No 321
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=52.02 E-value=26 Score=19.90 Aligned_cols=32 Identities=6% Similarity=-0.023 Sum_probs=23.0
Q ss_pred CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHH
Q 045063 71 CLNLTAYTFTPVLGACSALPAPERGKQVHALM 102 (175)
Q Consensus 71 ~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m 102 (175)
+++|+..||+-+.++.-+..-..++..+..+.
T Consensus 31 nLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 31 NIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp SCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 57788889988888887776666666555544
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.65 E-value=43 Score=21.12 Aligned_cols=63 Identities=8% Similarity=-0.100 Sum_probs=44.2
Q ss_pred HHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 29 THQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 29 a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
..+.++.-.-+.+.--..++..+.+.+ +-.|.++++.+.+.+...+..|.=--|+.+.+.|-+
T Consensus 6 ~~~~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344444444455666777888888777 889999999998887777777655566666666644
No 323
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=51.26 E-value=45 Score=21.22 Aligned_cols=63 Identities=8% Similarity=0.064 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHHHHh-cCCCC---CHhhHHHHHHHHhcCCCchhHHHHHHHHH-HhCC
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCYMHS-TCLNL---TAYTFTPVLGACSALPAPERGKQVHALMI-KGGT 107 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~~---~~~t~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~ 107 (175)
.....+|..+.-. ++.|+++.++..+ .|+.| +..++..++....+.|-++.. +.|..|. .+++
T Consensus 41 ~~~dg~iq~fe~t--~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~~~RN~ 108 (146)
T 1jog_A 41 TLIAGAIQKFEFV--YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYRDMRNI 108 (146)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHHHHhhH
Confidence 3445566665554 6777787777654 46654 467888888888888888777 4455555 4444
No 324
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=51.05 E-value=57 Score=22.39 Aligned_cols=129 Identities=15% Similarity=0.071 Sum_probs=65.4
Q ss_pred CchhHHHHHHHHHhCCC----cchHHHHHHHHHhcC-CCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC-CCcchHH
Q 045063 40 DLSSLNSQLFSYTRSRN----FPATWALFCYMHSTC-LNLTAYTFTPVLGACSALPAPERGKQVHALMIKGG-TDSEPVV 113 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~----~~~a~~l~~~m~~~~-~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~ 113 (175)
+..++.-+...+...+. ...+..+|..+-..+ -..+..-|..++..+......++...+|..+-..| -..+..-
T Consensus 107 G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~E 186 (256)
T 2jul_A 107 GLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEE 186 (256)
T ss_dssp SSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHH
T ss_pred CcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHH
Confidence 33444444444443321 123455565553221 22333344444444443333445555555443221 1233333
Q ss_pred HHHHHHHHH-hcC-----------ChHHHHHHHHhccCC--CchhHHHHHHHHHhcCChHHHHHHHHHH
Q 045063 114 KTALMDMYS-KYG-----------LLGESVEAFKEIEFK--DVVTWNALLSSFLRHGLAKEAFGVFQAM 168 (175)
Q Consensus 114 ~~~li~~~~-~~g-----------~~~~a~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m 168 (175)
+..++.... ..| .-+.+.++|+.+... ..++|.-++..+.+...+-++...|..+
T Consensus 187 f~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 187 MLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCSTTCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 433333322 124 235577778777532 5678888888888888887777777654
No 325
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.67 E-value=74 Score=24.26 Aligned_cols=90 Identities=10% Similarity=-0.025 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhCCCcc-----hHHHHHHHHHHHhcCChHHHHHHHHhcc-----CC---C--chh
Q 045063 80 TPVLGACSALPAPERGKQVHALMIKGGTDSE-----PVVKTALMDMYSKYGLLGESVEAFKEIE-----FK---D--VVT 144 (175)
Q Consensus 80 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~---~--~~~ 144 (175)
..|.+.+...|++.+|..+++.+...-...+ ...+...+..|...+++..|..+..... .+ + ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3445566677888888888888874322222 2466777788888999988888877754 11 1 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 045063 145 WNALLSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 145 ~~~li~~~~~~g~~~~a~~~~~~m~ 169 (175)
|..++.-+...+++.+|...|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6666777777888888888777764
No 326
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.49 E-value=82 Score=24.03 Aligned_cols=94 Identities=6% Similarity=-0.054 Sum_probs=69.8
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHhc--CCCCC---HhhHHHHHHHHhcCCCchhHHHHHHHHHH----hCCCcch--HH
Q 045063 45 NSQLFSYTRSRNFPATWALFCYMHST--CLNLT---AYTFTPVLGACSALPAPERGKQVHALMIK----GGTDSEP--VV 113 (175)
Q Consensus 45 ~~li~~~~~~g~~~~a~~l~~~m~~~--~~~~~---~~t~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~~--~~ 113 (175)
..|...|...|++.+|.+++.+.... |.... ...+...+.-|...+++..|..+...... ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 56778888899999999999998643 33222 23677778889999999999999988642 2223333 35
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 114 KTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
+...+..+...+++.+|.+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6777788888999999988777764
No 327
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=50.41 E-value=68 Score=23.08 Aligned_cols=144 Identities=7% Similarity=-0.101 Sum_probs=82.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAP 92 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~ 92 (175)
.|...+..|+.+.+..+++.-..+ |...++.|..+. +.|+.+ +.+.+.+.|..++...-...+...+..|+.
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~-~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC-KFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH-HHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHH-HcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence 566667789999999999874433 333445554444 456554 334444455555553233345555677888
Q ss_pred hhHHHHHHHHHHhCCCcch--------------------HHHHHHHHHHHhcC--ChHHHHHHHHhccCC---CchhHHH
Q 045063 93 ERGKQVHALMIKGGTDSEP--------------------VVKTALMDMYSKYG--LLGESVEAFKEIEFK---DVVTWNA 147 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~--------------------~~~~~li~~~~~~g--~~~~a~~~~~~m~~~---~~~~~~~ 147 (175)
+.+..+++.-...|..++. .-++ .+...+..| +.+-+..+++.-..+ |..-++.
T Consensus 98 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 176 (364)
T 3ljn_A 98 DLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQT-ALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETP 176 (364)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCC-HHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCC-HHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCH
Confidence 8888887776655655544 1233 344456677 677777776653332 3333444
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 045063 148 LLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 148 li~~~~~~g~~~~a~~~~~ 166 (175)
|..+ +..|+.+.+..+++
T Consensus 177 L~~A-~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 177 LMRA-MEFRNREALDLMMD 194 (364)
T ss_dssp HHHH-HHTTCHHHHHHHHH
T ss_pred HHHH-HHcCCHHHHHHHHh
Confidence 4444 56677665555544
No 328
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=50.30 E-value=71 Score=23.27 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHH
Q 045063 42 SSLNSQLFSYTRSRNFPATWALFCY 66 (175)
Q Consensus 42 ~~~~~li~~~~~~g~~~~a~~l~~~ 66 (175)
-.|.++..-|.+.+++++|.+++..
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3588888888899999999988766
No 329
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=49.90 E-value=45 Score=20.94 Aligned_cols=68 Identities=10% Similarity=-0.006 Sum_probs=49.8
Q ss_pred hhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 26 YVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 26 ~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
.+.+.+.++.-.-+.+..--.++..+...+..-.|.++++.+.+.+...+..|.--.|+.+.+.|-+.
T Consensus 6 ~~~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 44455554444445677778888888888888899999999988877777777767777777777544
No 330
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=49.31 E-value=41 Score=20.29 Aligned_cols=64 Identities=9% Similarity=-0.064 Sum_probs=27.7
Q ss_pred CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 045063 74 LTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFKD 141 (175)
Q Consensus 74 ~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 141 (175)
++...-...+.++.+.++.+....+...+ + .+|..+-...+.+.++.|+.+....+.+.+..+|
T Consensus 54 ~~~~vR~~A~~aL~~~~~~~a~~~L~~~L-~---d~~~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~ 117 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNFQDERAVEPLIKLL-E---DDSGFVRSGAARSLEQIGGERVRAAMEKLAETGT 117 (131)
T ss_dssp SCHHHHHHHHHHHGGGCSHHHHHHHHHHH-H---HCCTHHHHHHHHHHHHHCSHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCC
Confidence 44444444455555555433333333322 2 1344444455555555555433333333333333
No 331
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=48.87 E-value=50 Score=24.08 Aligned_cols=38 Identities=11% Similarity=0.123 Sum_probs=20.2
Q ss_pred hcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhC
Q 045063 69 STCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGG 106 (175)
Q Consensus 69 ~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 106 (175)
+.|+.|...++.=++..+++.=.++.+..+|+-+...|
T Consensus 221 ~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 221 KNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 34555555555555555555445555555555555544
No 332
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=48.82 E-value=46 Score=20.65 Aligned_cols=113 Identities=11% Similarity=-0.022 Sum_probs=61.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhH--HHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTF--TPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~--~~ll~~~~~~ 89 (175)
.+...++.|+.+.+..+++.-.. .+...++.+..+ ++.|+. ++.+.+.+.|..++.... .+.+...+..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-AGYNRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH-HHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH-HHcChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 44555677888888888875432 222233444444 455664 445555556666654321 1233444455
Q ss_pred CCchhHHHHHHHHHHhCCCcchHHH--HHHHHHHHhcCChHHHHHHHHhc
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVVK--TALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m 137 (175)
|+.+ +.+.+.+.|..++.... .+.+...+..|+.+-+..+++.-
T Consensus 86 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 131 (165)
T 3twr_A 86 GHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG 131 (165)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 6654 44455556665554321 23445557778888777777653
No 333
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=47.70 E-value=46 Score=21.36 Aligned_cols=137 Identities=11% Similarity=-0.039 Sum_probs=64.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~ 89 (175)
.|...++.|+.+.+..+++.-..+ +...++.+..+ +..|+.+-+..+++. .+..++.. -.+. +...++.
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A-~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~-L~~A~~~ 116 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA-GAQGRTEILAYMLKH---ATPDLNKHNRYGGNA-LIPAAEK 116 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHHHHHHHH---SCCCTTCCCTTSCCS-HHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH-HHcCCHHHHHHHHhc---cCcccccccCCCCcH-HHHHHHc
Confidence 555666788899888888875443 33334444444 455665544444433 23222221 2223 3444556
Q ss_pred CCchhHHHHHHHHHHhC-CCcc---hHHHHHHHHHHHhcCC-----hHHHHHHHHhccCC---CchhHHHHHHHHHhcCC
Q 045063 90 PAPERGKQVHALMIKGG-TDSE---PVVKTALMDMYSKYGL-----LGESVEAFKEIEFK---DVVTWNALLSSFLRHGL 157 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~-~~~~---~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~ 157 (175)
|+.+.+. .+.+.| ..++ ..-++.+..+ +..|. .+-+..+++.-..+ |..-++.+ ...++.|+
T Consensus 117 ~~~~~v~----~Ll~~g~~~~~~~~~~g~t~L~~A-~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~ 190 (201)
T 3hra_A 117 GHIDNVK----LLLEDGREDIDFQNDFGYTALIEA-VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAM-DYANQKGY 190 (201)
T ss_dssp TCHHHHH----HHHHHCCCCTTCCCTTSCCHHHHH-HHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTC
T ss_pred CCHHHHH----HHHHcCCCCcCCCCCCCCCHHHHH-HHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHH-HHHHHcCC
Confidence 6655444 444445 3333 2333444433 44554 34444444432222 22222333 33355666
Q ss_pred hHHHHH
Q 045063 158 AKEAFG 163 (175)
Q Consensus 158 ~~~a~~ 163 (175)
.+.+.-
T Consensus 191 ~~~~~~ 196 (201)
T 3hra_A 191 TEISKI 196 (201)
T ss_dssp HHHHHH
T ss_pred HhHHHH
Confidence 554433
No 334
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=46.85 E-value=53 Score=20.81 Aligned_cols=57 Identities=11% Similarity=-0.083 Sum_probs=44.3
Q ss_pred CCCchhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchh
Q 045063 38 HGDLSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPER 94 (175)
Q Consensus 38 ~~~~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~ 94 (175)
-+-+..--.++..+...+ .+-.|.++++.+.+.+...+..|.--.|+.+...|-+..
T Consensus 13 ~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 13 LKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp CCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 345666778888888777 788999999999988777787777777777777776543
No 335
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=46.49 E-value=46 Score=21.29 Aligned_cols=85 Identities=7% Similarity=-0.007 Sum_probs=50.5
Q ss_pred CChhHHHHHhhhc-c-CCCchhHHHHHHHHHhCC---CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHH
Q 045063 24 KRYVYTHQVFDEI-S-HGDLSSLNSQLFSYTRSR---NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQV 98 (175)
Q Consensus 24 ~~~~~a~~~f~~~-~-~~~~~~~~~li~~~~~~g---~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~ 98 (175)
.++...++-|..- . .++..+-=.+-.++.++. +...+..++++..+.+..-...-.=.+--++.+.|+.++|+..
T Consensus 20 eeL~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y 99 (144)
T 1y8m_A 20 QQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY 99 (144)
T ss_dssp HHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444555432 1 233333333344555654 4568899999987653221222333445678899999999999
Q ss_pred HHHHHHhCCCcc
Q 045063 99 HALMIKGGTDSE 110 (175)
Q Consensus 99 ~~~m~~~~~~~~ 110 (175)
.+.+.+ +.|+
T Consensus 100 ~d~lL~--~eP~ 109 (144)
T 1y8m_A 100 VDTLFE--HERN 109 (144)
T ss_dssp HHHHHH--TCCC
T ss_pred HHHHHh--cCCC
Confidence 999998 4564
No 336
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.72 E-value=28 Score=25.57 Aligned_cols=92 Identities=3% Similarity=-0.059 Sum_probs=48.1
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC-ChHHHHHHHHhccCCCchhHHHHHHHHHhcC
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYG-LLGESVEAFKEIEFKDVVTWNALLSSFLRHG 156 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g 156 (175)
....+++=|...|+.++|...++++..... ....+...+..+.-+.. .-+.+..++..+.+.+..+-..+..||.+..
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~ 91 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEIL 91 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 345566667777777777777666532111 11122222222222211 2334556666666667777777766665542
Q ss_pred --------ChHHHHHHHHHHHh
Q 045063 157 --------LAKEAFGVFQAMTR 170 (175)
Q Consensus 157 --------~~~~a~~~~~~m~~ 170 (175)
|.+.|...+.++..
T Consensus 92 ~~l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 92 ELAEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHG
T ss_pred hhChHhhcCccchHHHHHHHHH
Confidence 45555555555544
No 337
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.86 E-value=22 Score=21.91 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=24.5
Q ss_pred HHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 64 FCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 64 ~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
|+.+.+..+.|+...-..-+..+...++++.|.+++..+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344445655555444445555667778888877777654
No 338
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=44.11 E-value=54 Score=21.60 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHH
Q 045063 98 VHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGV 164 (175)
Q Consensus 98 ~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~ 164 (175)
+.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ |..-++.|.. .+..|+.+.+..+
T Consensus 88 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~~v~~L 158 (231)
T 3aji_A 88 IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHR-AAAKGNLKMVHIL 158 (231)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHHTCHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHH-HHHcCCHHHHHHH
Confidence 3344444555443221 122344445667776666666543322 2222333333 3455665544333
No 339
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=43.52 E-value=55 Score=26.14 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHH
Q 045063 93 ERGKQVHALMIKGGTDS-EPVVKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a 161 (175)
+..++..+++..+ ++. +..----++..|.+.|..+.|.++.+.+..+ +...|.+ +..|+|.|+++++
T Consensus 498 ~~gr~~IselLpr-~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~geA-L~~f~rA~~~~~V 568 (570)
T 3f3f_C 498 SAKKMVIAELLPH-YPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNIIES-IANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHHGGG-CCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred hHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHHHH-HHHHHHcCChhhc
Confidence 3455555555543 222 3346677889999999999999999998865 4446644 4558999988765
No 340
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=42.99 E-value=63 Score=20.98 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=62.5
Q ss_pred hhcCCCChhHHHHHhhhccCC-C-chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhc-CCCc
Q 045063 19 ADALPKRYVYTHQVFDEISHG-D-LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSA-LPAP 92 (175)
Q Consensus 19 ~~~~~~~~~~a~~~f~~~~~~-~-~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~-~~~~ 92 (175)
..++.|+++....+++.-... + ..-++. +...+..|+.+.-.++.+-+.+.|..++.. -++.|..++.. ..+.
T Consensus 12 ~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~-Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~ 90 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEKGYEDKESVLKSNI-LYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDI 90 (186)
T ss_dssp HHHHHSCHHHHHHHHHHSSSCHHHHHTTTH-HHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHhcCcccccccCCCCH-HHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcch
Confidence 345778999888887654321 2 223444 444556677666677888888888887764 23444433332 2334
Q ss_pred hhHHHHHHHHHHhCCCcchH---HHHHHHHHHHhcCC
Q 045063 93 ERGKQVHALMIKGGTDSEPV---VKTALMDMYSKYGL 126 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~ 126 (175)
....++.+.+.+.|..++.. -.++.+...+..|.
T Consensus 91 ~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~ 127 (186)
T 3t8k_A 91 TGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127 (186)
T ss_dssp HHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCS
T ss_pred hhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCC
Confidence 44567778888888876653 23234444444443
No 341
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.04 E-value=79 Score=21.46 Aligned_cols=63 Identities=5% Similarity=-0.002 Sum_probs=44.5
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCChHHHHHHHHhccCCC
Q 045063 78 TFTPVLGACSALPAPERGKQVHALMIKGGTDSEP-VVKTALMDMYSKYGLLGESVEAFKEIEFKD 141 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 141 (175)
.|.-.++.| ..+.......+|..|...||-... ..|-.....+...|++.+|.++|+.=.+..
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444443 234466888999999988875544 477888888888999999999988765443
No 342
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=41.81 E-value=62 Score=23.63 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
.+++..+.+.|+.|...++.-++-.|++.=.++.+.++|+.+-
T Consensus 229 P~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l 271 (345)
T 2qfz_A 229 EQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQ 271 (345)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHH
Confidence 3566666677777777777777777777777777777777766
No 343
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=41.66 E-value=57 Score=19.69 Aligned_cols=77 Identities=9% Similarity=-0.058 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHH
Q 045063 56 NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFK 135 (175)
Q Consensus 56 ~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 135 (175)
++++|..+=+.....+. ...+-.+=+.++...|++++|..+.+.+ +.||...|-+|.. .|.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44566666665555533 2222223344555677777776665443 4677777766654 35666666665554
Q ss_pred hccCC
Q 045063 136 EIEFK 140 (175)
Q Consensus 136 ~m~~~ 140 (175)
.+...
T Consensus 94 ~la~s 98 (116)
T 2p58_C 94 RLARS 98 (116)
T ss_dssp HHTTC
T ss_pred HHHhC
Confidence 44433
No 344
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=41.30 E-value=78 Score=23.55 Aligned_cols=24 Identities=8% Similarity=-0.112 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHH
Q 045063 79 FTPVLGACSALPAPERGKQVHALM 102 (175)
Q Consensus 79 ~~~ll~~~~~~~~~~~a~~~~~~m 102 (175)
...++.=|...|+.++|.+.++++
T Consensus 15 ~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 15 TETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 445555555556666666555555
No 345
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=40.94 E-value=1e+02 Score=22.31 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=50.9
Q ss_pred HHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHHHHHHH----HhcCChHHHHHHHHh-c
Q 045063 63 LFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTALMDMY----SKYGLLGESVEAFKE-I 137 (175)
Q Consensus 63 l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~g~~~~a~~~~~~-m 137 (175)
++..+.+.|+.|...++.-++..+++.=.++.+..+|+.+...|...-....-+++..+ .+..++++...++.. +
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~ 289 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTL 289 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC
Confidence 34444555666666666666666666666777777777777666543222333333222 223467777777665 3
Q ss_pred cCCCchhHHHHHHHHHhcC
Q 045063 138 EFKDVVTWNALLSSFLRHG 156 (175)
Q Consensus 138 ~~~~~~~~~~li~~~~~~g 156 (175)
+..+...-..+|+--....
T Consensus 290 p~~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 290 PNLGLVQMEKTINQVFEMD 308 (331)
T ss_dssp TCCCHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 3333344444554433333
No 346
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=40.65 E-value=85 Score=21.41 Aligned_cols=96 Identities=15% Similarity=-0.039 Sum_probs=53.2
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCC-------CHhhHHHHHHHHh--cCCCchhHHHHHHHHHHh------
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNL-------TAYTFTPVLGACS--ALPAPERGKQVHALMIKG------ 105 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~m~~~------ 105 (175)
..-.+.|..+ ++.|+.+.+..+++.....+... +..-++.|..++. +.|+.+.+..+++.-...
T Consensus 11 ~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 11 LYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred cccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 3334444444 46778888877877766555433 3334556665554 357777777666653221
Q ss_pred ---CC-CcchHHHHHHHHHHHhcCChHHHHHHHHhcc
Q 045063 106 ---GT-DSEPVVKTALMDMYSKYGLLGESVEAFKEIE 138 (175)
Q Consensus 106 ---~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (175)
++ ..|..-++.| ...+..|+.+-+..+++.-.
T Consensus 90 i~~~~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 90 VNASYTDSYYKGQTAL-HIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp HTCCCCSTTTTTCCHH-HHHHHTTCHHHHHHHHHTTC
T ss_pred hhcccccccCCCCCHH-HHHHHcCCHHHHHHHHHCCC
Confidence 11 0222333333 34467788887777777633
No 347
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=39.94 E-value=45 Score=20.55 Aligned_cols=137 Identities=8% Similarity=-0.140 Sum_probs=70.3
Q ss_pred chhhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHh
Q 045063 14 TCISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACS 87 (175)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~ 87 (175)
...+...++.|+.+.+..+++.-..+ +...++.+..+ +. |+.+ +++.+.+.|..++.. -++.+.. .+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A-~~-~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~-A~ 78 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KL-GNPE----IARRLLLRGANPDLKDRTGFAVIHD-AA 78 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC-CS-SCHH----HHHHHHHTTCCTTCCCTTSCCHHHH-HH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH-Hc-CcHH----HHHHHHHcCCCCCCCCCCCCCHHHH-HH
Confidence 33455566678888888888754432 33334444333 23 5543 344444456555432 2333433 33
Q ss_pred cCCCchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhccC----CCchhHHHHHHHHHhcCChHHH
Q 045063 88 ALPAPERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEIEF----KDVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 88 ~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~a 161 (175)
+.|+.+ +.+.+.+.|..++... -.+.+...++.|..+-+..+++.-.. +|..-++.+-. .++.|+.+.+
T Consensus 79 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~-A~~~~~~~~~ 153 (162)
T 1ihb_A 79 RAGFLD----TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL-ARLYGRNEVV 153 (162)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHH-HHHTTCHHHH
T ss_pred HcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHH-HHHcCCHHHH
Confidence 445544 4444555666554331 12344555778888877777765332 23333344433 3566665444
Q ss_pred H
Q 045063 162 F 162 (175)
Q Consensus 162 ~ 162 (175)
.
T Consensus 154 ~ 154 (162)
T 1ihb_A 154 S 154 (162)
T ss_dssp H
T ss_pred H
Confidence 3
No 348
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.60 E-value=62 Score=21.36 Aligned_cols=21 Identities=10% Similarity=-0.047 Sum_probs=14.3
Q ss_pred hhhhhcCCCChhHHHHHhhhc
Q 045063 16 ISIADALPKRYVYTHQVFDEI 36 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~ 36 (175)
.|...+..|+.+.+..+++.-
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~ 60 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAA 60 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 455556677888887777753
No 349
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=39.44 E-value=67 Score=19.88 Aligned_cols=142 Identities=6% Similarity=-0.016 Sum_probs=77.4
Q ss_pred hhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcCC
Q 045063 17 SIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSALP 90 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~~ 90 (175)
+...++.|+.+.+..+++.-.. +|...++.+..+. +.|+. ++.+.+.+.|..++.. -.+. +...+..|
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~-~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~ 80 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAA-AHGQI----AVVEFLLQNGADPQLLGKGRESA-LSLACSKG 80 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHH-HTTCH----HHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHH-HCCCH----HHHHHHHHcCCCCCCcCCCCCcH-HHHHHHcC
Confidence 4455678999999988877543 3444455555444 55664 3444455556665532 2233 33444455
Q ss_pred CchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHHHH
Q 045063 91 APERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFGVF 165 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~~~ 165 (175)
..+- .+.+.+.|..++... -.+.+...+..|+.+-+..+++.-..+ |..-++.+ ...++.|+.+.+.-++
T Consensus 81 ~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 81 YTDI----VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSM-DLAVALGYRSVQQVIE 155 (167)
T ss_dssp CHHH----HHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHH
T ss_pred CHHH----HHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHH
Confidence 5444 444455566555332 123444556778888887777753333 32233333 3346677777666665
Q ss_pred HHHH
Q 045063 166 QAMT 169 (175)
Q Consensus 166 ~~m~ 169 (175)
+...
T Consensus 156 ~~~~ 159 (167)
T 3v31_A 156 SHLL 159 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 350
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=37.74 E-value=27 Score=22.82 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=12.5
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG 39 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~ 39 (175)
+|.-|...+++++|...++++..|
T Consensus 16 ii~EYf~~~D~~Ea~~~l~eL~~p 39 (165)
T 2rg8_A 16 IIQEYFEHGDTNEVAEMLRDLNLG 39 (165)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCHHHHHHHHHHhCCc
Confidence 444444555555555555555444
No 351
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=37.70 E-value=1.9e+02 Score=24.59 Aligned_cols=127 Identities=11% Similarity=0.011 Sum_probs=69.7
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
++..+...|.++.|.++....+.....+| .+-.+|...|++++|...|.+.- .|+..+...... .+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~y-v~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAVY-LKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHHH-HHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHHH-HHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 55566667777777776655555333333 34566677888888888887742 233222111000 0011
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhcc----CCC----chhHHHHHHHHHhcC
Q 045063 96 KQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIE----FKD----VVTWNALLSSFLRHG 156 (175)
Q Consensus 96 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~----~~~~~~li~~~~~~g 156 (175)
..++.... .-.....=|..++..|-+.+.++.+.++-+... ..| ...|+.++++.+..|
T Consensus 884 ~~ll~~~e--~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYH--HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTT--TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCccc--ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 11111100 011122357888899999999888766655433 222 236888888877655
No 352
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=37.46 E-value=95 Score=21.03 Aligned_cols=73 Identities=12% Similarity=-0.104 Sum_probs=36.7
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhCCCcchHH---HHHHHHHHHhcCChHHHHHHHHhccCCC---chhHHHHHHHHHhcC
Q 045063 83 LGACSALPAPERGKQVHALMIKGGTDSEPVV---KTALMDMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSSFLRHG 156 (175)
Q Consensus 83 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g 156 (175)
+...++.|+.+.+ +.+.+.|..++... -.+.+...++.|..+-+..+++.-..++ ..-++.|.. .++.|
T Consensus 162 L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~-A~~~~ 236 (282)
T 1oy3_D 162 LHVAVIHKDAEMV----RLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS-ALLRP 236 (282)
T ss_dssp HHHHHHTTCHHHH----HHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHTSS
T ss_pred HHHHHHcCCHHHH----HHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHH-HHHcC
Confidence 3334445554443 44445566555432 2244555567888877777776633332 222333333 35566
Q ss_pred ChHH
Q 045063 157 LAKE 160 (175)
Q Consensus 157 ~~~~ 160 (175)
+.+.
T Consensus 237 ~~~~ 240 (282)
T 1oy3_D 237 NPIL 240 (282)
T ss_dssp CHHH
T ss_pred CcHH
Confidence 6543
No 353
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=36.99 E-value=81 Score=20.10 Aligned_cols=129 Identities=14% Similarity=0.025 Sum_probs=71.3
Q ss_pred hcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcCCCch
Q 045063 20 DALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSALPAPE 93 (175)
Q Consensus 20 ~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~~~~~ 93 (175)
-++.|+.+.+..+++.-..+ |..-++.+..+ +..|..+-+. .+.+.|..++.. -++.|.. .++.|..+
T Consensus 11 Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a-~~~~~~~~~~----~ll~~gad~~~~d~~g~TpLh~-A~~~g~~~ 84 (169)
T 4gpm_A 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHA-AENGHKEVVK----LLISKGADVNAKDSDGRTPLHH-AAENGHKE 84 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH-HHcCCHHHHH----HHHhcccchhhhccCCCCHHHH-HHHcCCHH
Confidence 35789999999998875433 33444555444 3455544333 334556555443 2334443 44556654
Q ss_pred hHHHHHHHHHHhCCCcchH---HHHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHH
Q 045063 94 RGKQVHALMIKGGTDSEPV---VKTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKE 160 (175)
Q Consensus 94 ~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~ 160 (175)
+.+.+.+.|..++.. -++. +...++.|+.+-+..+++.=..+ |..-++.|..+ ++.|+.+-
T Consensus 85 ----~v~~Ll~~gadvn~~d~~G~Tp-Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A-~~~g~~~i 151 (169)
T 4gpm_A 85 ----VVKLLISKGADVNAKDSDGRTP-LHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLA-REHGNEEV 151 (169)
T ss_dssp ----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHHH
T ss_pred ----HHHHHHHCcCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH-HHcCCHHH
Confidence 445556677766543 2344 44457788888887777753333 33334445444 55666543
No 354
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=36.51 E-value=45 Score=19.01 Aligned_cols=35 Identities=17% Similarity=-0.073 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063 57 FPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91 (175)
Q Consensus 57 ~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~ 91 (175)
.++|...|.+|+...-.....||.-.+...+...+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpR 50 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPR 50 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSG
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCc
Confidence 46888888888766333444577777776665543
No 355
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=36.01 E-value=70 Score=21.84 Aligned_cols=132 Identities=8% Similarity=-0.051 Sum_probs=72.0
Q ss_pred hhhhhcCCCChhHHHHHhhhccC-----------CCchhHHHHHHHHH--hCCCcchHHHHHHHHHh---------cCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISH-----------GDLSSLNSQLFSYT--RSRNFPATWALFCYMHS---------TCLN 73 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~-----------~~~~~~~~li~~~~--~~g~~~~a~~l~~~m~~---------~~~~ 73 (175)
.|...++.|+++.+..+++.... .+..-++.|..+.. +.|+.+-+.-+++.-.. .+..
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 45555677888888888875431 13445666766664 34776666666655321 1111
Q ss_pred -CCHhhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHH----------------HHHHHHHHHhcCChHHHHHHHH-
Q 045063 74 -LTAYTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVV----------------KTALMDMYSKYGLLGESVEAFK- 135 (175)
Q Consensus 74 -~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----------------~~~li~~~~~~g~~~~a~~~~~- 135 (175)
.|..-++.|.. .++.|+.+.+ +.+.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 96 ~~d~~g~tpL~~-A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 170 (273)
T 2pnn_A 96 DSYYKGQTALHI-AIERRNMTLV----TLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQN 170 (273)
T ss_dssp STTTTTCCHHHH-HHHTTCHHHH----HHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccCCCCCHHHH-HHHcCCHHHH----HHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 22233344443 4455665544 44455566555432 2244555677899988888888
Q ss_pred --hcc---CCCchhHHHHHHHH
Q 045063 136 --EIE---FKDVVTWNALLSSF 152 (175)
Q Consensus 136 --~m~---~~~~~~~~~li~~~ 152 (175)
.-. .+|..-++.|..+.
T Consensus 171 ~~~gad~~~~d~~g~tpLh~A~ 192 (273)
T 2pnn_A 171 SWQPADISARDSVGNTVLHALV 192 (273)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHH
T ss_pred ccCCCCceeeCCCCCcHHHHHH
Confidence 222 22444445555543
No 356
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=35.75 E-value=1.1e+02 Score=21.08 Aligned_cols=19 Identities=5% Similarity=-0.233 Sum_probs=8.3
Q ss_pred CCCchhHHHHHHHHHhcCC
Q 045063 139 FKDVVTWNALLSSFLRHGL 157 (175)
Q Consensus 139 ~~~~~~~~~li~~~~~~g~ 157 (175)
.+|..+-...+.++.+.|+
T Consensus 203 d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 203 DKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCC
Confidence 3344444444444444443
No 357
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=35.24 E-value=1.2e+02 Score=21.63 Aligned_cols=40 Identities=5% Similarity=0.033 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 98 VHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 98 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
++..+.+.|+.|...++.-++..|++.=.++.+.++|+..
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~ 215 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLL 215 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4444444455555555555555555444455555555443
No 358
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=34.95 E-value=68 Score=21.67 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=52.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCC-CCC---HhhHHHHHHHHhc
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCL-NLT---AYTFTPVLGACSA 88 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~-~~~---~~t~~~ll~~~~~ 88 (175)
.|...++.|+.+.+..+++.-..+ +...++.|..+. +.|+.+ +++.+.+.|. .++ ..-.+.+.. .++
T Consensus 60 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~----~v~~Ll~~~~~~~~~~~~~g~t~L~~-A~~ 133 (253)
T 1yyh_A 60 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV-SADAQG----VFQILIRNRATDLDARMHDGTTPLIL-AAR 133 (253)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HHTCHH----HHHHHHHSTTSCTTCCCTTCCCHHHH-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-HcCCHH----HHHHHHHcCCCCccccCCCCCcHHHH-HHH
Confidence 555666778888888887764433 333344444443 444433 3333333322 221 122233332 333
Q ss_pred CCCchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHh
Q 045063 89 LPAPERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 89 ~~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
.|..+.+. .+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 134 ~~~~~~v~----~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 179 (253)
T 1yyh_A 134 LAVEGMLE----DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN 179 (253)
T ss_dssp HTCSSHHH----HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred cChHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 44444333 3344455444321 12334444666777766666655
No 359
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=34.91 E-value=52 Score=18.11 Aligned_cols=35 Identities=6% Similarity=-0.087 Sum_probs=23.2
Q ss_pred CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCC
Q 045063 56 NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALP 90 (175)
Q Consensus 56 ~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~ 90 (175)
..++|.+.|.+|+...-.....+|.-.+..+....
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~Dp 47 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDP 47 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCc
Confidence 34788888888876633344457887777766544
No 360
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=34.74 E-value=1.1e+02 Score=20.82 Aligned_cols=111 Identities=5% Similarity=-0.053 Sum_probs=46.2
Q ss_pred hhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCc
Q 045063 17 SIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAP 92 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~ 92 (175)
+...+..|+.+.+..+++.-... |...++.+..+. +.|+.+ +.+.+.+.|..++.. ...+.+...++.|+.
T Consensus 40 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~ 114 (261)
T 2xai_A 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC-VSGSWD----CVNLLLQHGASVQPESDLASPIHEAARRGHV 114 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-HHTCHH----HHHHHHHTTCCSSCSCTTCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HcCCHH----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCcH
Confidence 33344556666665555543222 222233333333 333332 333333444443322 111223333344443
Q ss_pred hhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHh
Q 045063 93 ERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 93 ~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++.
T Consensus 115 ~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 115 E----CVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp H----HHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred H----HHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 3 3344444454443221 11333444566666666666654
No 361
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=34.62 E-value=42 Score=22.45 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=10.2
Q ss_pred HHHHHHHhcCChHHHHHHHHh
Q 045063 116 ALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 116 ~li~~~~~~g~~~~a~~~~~~ 136 (175)
.+|.++...|++++|.+.+..
T Consensus 37 qvI~GLlql~~ydea~~yI~~ 57 (192)
T 1ixm_A 37 QLIKGNLSLQKYDRVFEMIEE 57 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555555444443
No 362
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=33.94 E-value=1.2e+02 Score=21.35 Aligned_cols=136 Identities=12% Similarity=-0.055 Sum_probs=69.1
Q ss_pred hhhhcCCCChhHHHHHhhhcc----CCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh--hHHHHHHHHhcCC
Q 045063 17 SIADALPKRYVYTHQVFDEIS----HGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY--TFTPVLGACSALP 90 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~--t~~~ll~~~~~~~ 90 (175)
|..-++.|+.+.+..++++.. ..+....+.+..+.... .......+.+-+.+.|..++.. .-.+.+...++.|
T Consensus 172 L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~-~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~ 250 (337)
T 4g8k_A 172 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS-DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 250 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHS-CTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHc-CcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh
Confidence 334456788888888876532 12333444454444332 2233334444456677666543 1223344555666
Q ss_pred CchhHHHHHHHHHHhCCCcch---HHHHHHHHHHHhcCChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHH
Q 045063 91 APERGKQVHALMIKGGTDSEP---VVKTALMDMYSKYGLLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKE 160 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 160 (175)
..+.+..++. ..|..++. .-++.| ...++.|+.+-+..+++.=-.+|.. +.|.. -++.|+.+.
T Consensus 251 ~~~~v~~Ll~---~~~~~vn~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GAd~n~~--~~L~~-A~~~~~~~i 316 (337)
T 4g8k_A 251 HLGLVQRLLE---QEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCG--DLVMT-ARRNYDHSL 316 (337)
T ss_dssp CHHHHHHHHT---STTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHTTSCSSTTC--CHHHH-HHHTTCHHH
T ss_pred hhHHHHHHHH---hcCCcccCcCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCC--CHHHH-HHHcCCHHH
Confidence 6665554432 23443332 223333 4446778887777776653333433 34443 356676543
No 363
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=33.43 E-value=1.1e+02 Score=20.70 Aligned_cols=111 Identities=6% Similarity=-0.006 Sum_probs=57.3
Q ss_pred hhhhcCCCChhHHHHHhhhccC---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcCC
Q 045063 17 SIADALPKRYVYTHQVFDEISH---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSALP 90 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~~ 90 (175)
|...+..|+.+.+..+++.-.. .|...++.|..+. +.|+.+- .+.+.+.|..++.. -.+.+. ..+..|
T Consensus 7 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~ 80 (261)
T 2xai_A 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEAC-LGGHLSC----VKILLKHGAQVNGVTADWHTPLF-NACVSG 80 (261)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH-HHTCHHH----HHHHHHTTCCTTCCCTTSCCHHH-HHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH-HcCCHHH----HHHHHHCCCCCCCCCCCCCCHHH-HHHHcC
Confidence 4445567788888888775433 2333344444443 4455443 33344455555432 233333 334445
Q ss_pred CchhHHHHHHHHHHhCCCcchH-HHHHHHHHHHhcCChHHHHHHHHhc
Q 045063 91 APERGKQVHALMIKGGTDSEPV-VKTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
+.+ +.+.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-
T Consensus 81 ~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 124 (261)
T 2xai_A 81 SWD----CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 124 (261)
T ss_dssp CHH----HHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHH----HHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 544 344445555544422 1223445556778887777777653
No 364
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=33.01 E-value=66 Score=17.91 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=31.0
Q ss_pred ChHHHHHHHHhccCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhccc
Q 045063 126 LLGESVEAFKEIEFKDVVTWNALLSSFLRHGLAKEAFGVFQAMTRERV 173 (175)
Q Consensus 126 ~~~~a~~~~~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 173 (175)
.+++|.+++-+-.+.. .++|+--.+-| +.+|-.+.++|.+.|+
T Consensus 11 Ly~~A~~~V~~~~~aS----~S~lQR~lrIG-YnRAArlid~lE~~Gi 53 (73)
T 2ve8_A 11 LYDEAVRFVTESRRAS----ISAVQRKLKIG-YNRAARMIEAMEMAGV 53 (73)
T ss_dssp THHHHHHHHHHHCCCC----HHHHHHHHTCC-HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCcc----HHHHHHHHccC-hHHHHHHHHHHHHCCc
Confidence 4667776665543333 46677777888 7899999999999886
No 365
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=32.93 E-value=1.5e+02 Score=21.91 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=21.0
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCY 66 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~ 66 (175)
.|.++..-|.+.+++++|.+++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH
Confidence 578889999999999999998776
No 366
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.19 E-value=1.1e+02 Score=20.14 Aligned_cols=20 Identities=15% Similarity=-0.044 Sum_probs=11.4
Q ss_pred hhhhhcCCCChhHHHHHhhh
Q 045063 16 ISIADALPKRYVYTHQVFDE 35 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~ 35 (175)
.|...++.|+.+.+..+++.
T Consensus 14 ~L~~A~~~g~~~~v~~Ll~~ 33 (237)
T 3b7b_A 14 PLHAAAEAGHVDICHMLVQA 33 (237)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHcCcHHHHHHHHHc
Confidence 44444556666666666654
No 367
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=32.13 E-value=96 Score=19.54 Aligned_cols=55 Identities=7% Similarity=-0.092 Sum_probs=42.2
Q ss_pred CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCch
Q 045063 39 GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPE 93 (175)
Q Consensus 39 ~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~ 93 (175)
+.+.--..++..+...+.+-.|.++++.+.+.+...+..|.--.|+.+...|-+.
T Consensus 24 r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 24 KNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp -CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 4566677888888888888999999999988877777776666677777777544
No 368
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=31.83 E-value=35 Score=23.16 Aligned_cols=83 Identities=12% Similarity=-0.069 Sum_probs=52.0
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhCCCcch-------HHHHHHHHHHHhc---CChHHHHHHHHhccCC-----------
Q 045063 82 VLGACSALPAPERGKQVHALMIKGGTDSEP-------VVKTALMDMYSKY---GLLGESVEAFKEIEFK----------- 140 (175)
Q Consensus 82 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~---g~~~~a~~~~~~m~~~----------- 140 (175)
.+...++.|+.+.+..+++.+.+.|..++. .-++.|.. .+.. |+.+-+..+++.-..+
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~-A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~ 83 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK-AVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC 83 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH-HHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH-HHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence 345566778999998899988888876554 33444444 4555 8888887777764322
Q ss_pred ---CchhHHHHHHHHHhcCChHHHHHHHH
Q 045063 141 ---DVVTWNALLSSFLRHGLAKEAFGVFQ 166 (175)
Q Consensus 141 ---~~~~~~~li~~~~~~g~~~~a~~~~~ 166 (175)
|..-++.|..+ +..|+.+.+..+++
T Consensus 84 ~~~d~~g~t~L~~A-~~~g~~~~v~~Ll~ 111 (256)
T 2etb_A 84 TDEFYQGHSALHIA-IEKRSLQCVKLLVE 111 (256)
T ss_dssp CSTTTTTCCHHHHH-HHTTCHHHHHHHHH
T ss_pred ccccccCCCHHHHH-HHcCCHHHHHHHHH
Confidence 23344555554 66777665544443
No 369
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.73 E-value=1.9e+02 Score=22.84 Aligned_cols=117 Identities=9% Similarity=0.060 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh------hHHH-HHHHHhcCCCchhHHHHHHHHHHhCCCcchH-
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY------TFTP-VLGACSALPAPERGKQVHALMIKGGTDSEPV- 112 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~------t~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~- 112 (175)
...+|.++..|.+.+.++.|..+..... ++.+.. +|.- +-....-.+++.+|.+.+....+. .+++..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~~~a 306 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCSSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcchhh
Confidence 5569999999999999999999999873 221211 2221 123344567888888887776543 222211
Q ss_pred ------H--HHHHHHHHHhcCChHHHHHHHHhc-cCCCchhHHHHHHHHHhcCChHHHHHHH
Q 045063 113 ------V--KTALMDMYSKYGLLGESVEAFKEI-EFKDVVTWNALLSSFLRHGLAKEAFGVF 165 (175)
Q Consensus 113 ------~--~~~li~~~~~~g~~~~a~~~~~~m-~~~~~~~~~~li~~~~~~g~~~~a~~~~ 165 (175)
. |-.++... .|+.-+- .+|..- .++....|..|..+ ++.|++..-...+
T Consensus 307 ~gfr~~a~K~lI~V~LL--lG~iP~r-~lf~q~~l~~~L~pY~~Lv~A-vr~GdL~~F~~~L 364 (523)
T 4b4t_S 307 LGFLQQSNKLHCCIQLL--MGDIPEL-SFFHQSNMQKSLLPYYHLTKA-VKLGDLKKFTSTI 364 (523)
T ss_dssp SHHHHHHHHHHHHHHHH--HTCCCCH-HHHTTTSCHHHHHHHHHHHHH-HHHTCHHHHHHHH
T ss_pred hhHHHHHHHHHHhHHhh--cCCCCCh-HHhhchhHHHHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 1 22222222 4654432 222211 11123446666666 4667766554444
No 370
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=31.28 E-value=1.1e+02 Score=19.89 Aligned_cols=135 Identities=7% Similarity=-0.030 Sum_probs=72.9
Q ss_pred hhhhhcCCCChhHHHHHhhhcc-C---CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh--HHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEIS-H---GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT--FTPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t--~~~ll~~~~~~ 89 (175)
.+...+..|+.+.+..+++.-. . ++...++.+..+. +.|+.+ +.+.+.+.|..++... -.+.+...+..
T Consensus 61 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~-~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 135 (223)
T 2f8y_A 61 PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA-RLAVEG----MLEDLINSHADVNAVDDLGKSALHWAAAV 135 (223)
T ss_dssp HHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH-HHTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH-HhCcHH----HHHHHHHcCCCCcCcCCCCCcHHHHHHHc
Confidence 5666678889998888887643 2 2333444544444 445543 4444445666555431 22334444556
Q ss_pred CCchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhccCCC---chhHHHHHHHHHhcCChHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEIEFKD---VVTWNALLSSFLRHGLAKE 160 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~ 160 (175)
|+.+. .+.+.+.|..++... -.+.+...++.|..+-+..+++.-..++ ..-.+. +...++.|+.+.
T Consensus 136 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~-l~~A~~~~~~~i 206 (223)
T 2f8y_A 136 NNVDA----AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP-RDIAQERMHHDI 206 (223)
T ss_dssp TCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHTTCHHH
T ss_pred CCHHH----HHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCH-HHHHHHhcchHH
Confidence 66544 444555566555331 1234455578888888888877644442 222233 333456666543
No 371
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=31.02 E-value=97 Score=19.24 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=72.8
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~ 89 (175)
.+..-++.|+.+.+..+++.-... |...++.+..+ ++.|+.+ +.+.+.+.|..++.. -.+. +...+..
T Consensus 17 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~ 90 (169)
T 2y1l_E 17 KLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA-AFNGHLE----IVEVLLKNGADVNAVDHAGMTP-LRLAALF 90 (169)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred hHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCccCCCCCCH-HHHHHHc
Confidence 555667789999999888875432 33334444444 4566644 444444556555432 2233 3444455
Q ss_pred CCchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEA 161 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a 161 (175)
|+.+ +.+.+.+.|..++... -.+.+...++.|+.+-+..+++.-..+ |..-.+.+-. .++.|+.+.+
T Consensus 91 ~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~~~~~ 162 (169)
T 2y1l_E 91 GHLE----IVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI-SIDNGNEDLA 162 (169)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHH
T ss_pred CCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH-HHHhCCHHHH
Confidence 6654 4445555665554331 233455557788888777777753332 2223333333 3566665443
No 372
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.94 E-value=1.3e+02 Score=20.48 Aligned_cols=68 Identities=12% Similarity=-0.006 Sum_probs=49.9
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh-hHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY-TFTPVLGACSALPAPERGKQVHALMIKGGTDSEPV 112 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~-t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 112 (175)
|-..+..+ ..++..++.++|..|...|+=-... -|-..-..+-..|++.+|.++|..=++.+-.|-..
T Consensus 83 Wl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~r 151 (202)
T 3esl_A 83 WIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNR 151 (202)
T ss_dssp HHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 44444444 2334679999999999887755543 45555666677899999999999999888788654
No 373
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.72 E-value=1.3e+02 Score=20.75 Aligned_cols=48 Identities=17% Similarity=0.035 Sum_probs=34.6
Q ss_pred chhHHHHHHHHHHhCCCcchH--HH-----HHHHHHHHhcCChHHHHHHHHhccC
Q 045063 92 PERGKQVHALMIKGGTDSEPV--VK-----TALMDMYSKYGLLGESVEAFKEIEF 139 (175)
Q Consensus 92 ~~~a~~~~~~m~~~~~~~~~~--~~-----~~li~~~~~~g~~~~a~~~~~~m~~ 139 (175)
++.|..+|+.+.+....++.. .. -..+..|.+.|.+++|.++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 578999999998764332222 22 3445678899999999999998763
No 374
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=30.12 E-value=1.7e+02 Score=21.96 Aligned_cols=39 Identities=3% Similarity=-0.058 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHh
Q 045063 98 VHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKE 136 (175)
Q Consensus 98 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (175)
++..+.+.|+.|....+.-++-.|.+.=.++.+.++|+.
T Consensus 218 L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~ 256 (396)
T 1fkm_A 218 LYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDT 256 (396)
T ss_dssp HHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHH
Confidence 444444444544444444444444444444444444443
No 375
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=29.52 E-value=48 Score=15.22 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=10.9
Q ss_pred HHHHHhcCChHHHHHHHHhc
Q 045063 118 MDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m 137 (175)
+..|...|+.++|..+-.++
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~ 28 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTL 28 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHH
Confidence 44555566666665554444
No 376
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.95 E-value=2.1e+02 Score=22.61 Aligned_cols=59 Identities=8% Similarity=0.013 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhccCCCc-hhHHHH-------HHHHHhcCChHHHHHHHHHHH
Q 045063 111 PVVKTALMDMYSKYGLLGESVEAFKEIEFKDV-VTWNAL-------LSSFLRHGLAKEAFGVFQAMT 169 (175)
Q Consensus 111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~l-------i~~~~~~g~~~~a~~~~~~m~ 169 (175)
..++|.++..|...+.++.|..+.....-|.. .+.+.. -..+.-.+++.+|.+.|.+-.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34789999999999999999999999876632 222222 234556788888888877643
No 377
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=28.91 E-value=1e+02 Score=19.73 Aligned_cols=41 Identities=2% Similarity=-0.076 Sum_probs=22.7
Q ss_pred ChhHHHHHhhhccC--CCchhHHHHHHHHHhCCCcchHHHHHH
Q 045063 25 RYVYTHQVFDEISH--GDLSSLNSQLFSYTRSRNFPATWALFC 65 (175)
Q Consensus 25 ~~~~a~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~a~~l~~ 65 (175)
..+++..+|..+-. .+...|.-.+..+.+...+..|.+.|+
T Consensus 44 ~~~~~~~l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD 86 (174)
T 2i7a_A 44 SLDECRSLVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ 86 (174)
T ss_dssp CHHHHHHHHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777776643 345566665555544434455555554
No 378
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=28.44 E-value=91 Score=18.73 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=15.6
Q ss_pred CChhHHHHHhhhccCCCchhHHHHHHHHHh
Q 045063 24 KRYVYTHQVFDEISHGDLSSLNSQLFSYTR 53 (175)
Q Consensus 24 ~~~~~a~~~f~~~~~~~~~~~~~li~~~~~ 53 (175)
-..+.++++|+.++.++...++.+++++.+
T Consensus 61 T~q~k~R~Lld~v~~kG~~A~~~F~~~L~e 90 (107)
T 3kat_A 61 TRPSQMRKLFSLSQSWDRKCKDGLYQALKE 90 (107)
T ss_dssp SHHHHHHHHHHGGGGCCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555555543
No 379
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=28.32 E-value=82 Score=21.26 Aligned_cols=69 Identities=10% Similarity=0.046 Sum_probs=36.2
Q ss_pred CcchHHHHHHHHHhc--CCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHHH--hCCCcchHHHHHHHHHHHhc
Q 045063 56 NFPATWALFCYMHST--CLNLTAYTFTPVLGACSALPAPERGKQVHALMIK--GGTDSEPVVKTALMDMYSKY 124 (175)
Q Consensus 56 ~~~~a~~l~~~m~~~--~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~li~~~~~~ 124 (175)
+...+-.+++...+. .--.+...|..++.+.....+.++..+.+..+.+ .=-.++..+...|+.-+.+.
T Consensus 75 dv~~va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll~~~~LP~~n~~~L~~L~~~L~~V 147 (216)
T 1pbw_A 75 DVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLIRSPSIPHQYWLTLQYLLKHFFKL 147 (216)
T ss_dssp CHHHHHHHHHHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 344444455544333 1113445666777776555565555555666655 32344555666666655543
No 380
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=28.26 E-value=1.2e+02 Score=19.28 Aligned_cols=137 Identities=11% Similarity=0.036 Sum_probs=67.9
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC---CchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG---DLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSAL 89 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~ 89 (175)
.+...+..|+.+.+..+++.-... +...++.+..+. +.|+.+-+ +.+.+.|..++.. -.+.+. ..+..
T Consensus 38 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~-~A~~~ 111 (192)
T 2rfm_A 38 PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV-KNNRLGIA----EKLLSKGSNVNTKDFSGKTPLM-WSIIF 111 (192)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHH-HTTCHHHH----HHHHHHTCCTTCCCTTSCCHHH-HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHH-HcCCHHHH----HHHHHCCCCCCCCCCCCCcHHH-HHHHc
Confidence 445555667888888888765432 333344444443 55554433 3333345444332 233333 33344
Q ss_pred CCchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhccCC---CchhHHHHHHHHHhcCChHHHHH
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEIEFK---DVVTWNALLSSFLRHGLAKEAFG 163 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~a~~ 163 (175)
|..+ +.+.+.+.|..++... -.+.+...++.|+.+-+..+++.-..+ |..-++.+-. .+..|+.+.+.-
T Consensus 112 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~-A~~~~~~~~v~~ 185 (192)
T 2rfm_A 112 GYSE----MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS-ARIFGRQEVIKI 185 (192)
T ss_dssp TCHH----HHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH-HHHTTCHHHHHH
T ss_pred CCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-HHHhCcHHHHHH
Confidence 5544 3444555566554331 123445556778887777777653332 2222333333 355666544433
No 381
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=28.16 E-value=2.1e+02 Score=22.10 Aligned_cols=122 Identities=8% Similarity=-0.002 Sum_probs=69.7
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCH--------hhHHHHH-HHHhcCCCchhHHHHHHHHHHhCCCcc----
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMHSTCLNLTA--------YTFTPVL-GACSALPAPERGKQVHALMIKGGTDSE---- 110 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~--------~t~~~ll-~~~~~~~~~~~a~~~~~~m~~~~~~~~---- 110 (175)
.|.++..|.+.|+...+..+++.+...+..|+. ++|.--+ ..+.-.+++.+|.+-+.+..+.-++.+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~ 258 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQ 258 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccch
Confidence 588999999999999999999999887663332 2333332 233457788888887777665401111
Q ss_pred -hHH-----HHHHHHHHHhcCChHHHHHHHHhccCCCchh-HHHHHHHHHhcCChHHHHHHHHH
Q 045063 111 -PVV-----KTALMDMYSKYGLLGESVEAFKEIEFKDVVT-WNALLSSFLRHGLAKEAFGVFQA 167 (175)
Q Consensus 111 -~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~ 167 (175)
... ..-+|=+-.-.|+.-.-. ++..-..+...- |.-++. .++.|++..-.+++++
T Consensus 259 ~~~~n~~~ILkyLIpv~LLlG~~P~~~-ll~k~~~~~L~~~y~~L~~-AVr~Gdl~~F~~~L~~ 320 (455)
T 3t5v_B 259 AITRNGTRILNYMIPTGLILGKMVKWG-PLRPFLSQETIDNWSVLYK-HVRYGNIQGVSLWLRQ 320 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCBCHH-HHGGGSCHHHHHHHHHHHH-HHHHTCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCCHH-HHcccchHHHHHHHHHHHH-HHHhCCHHHHHHHHHH
Confidence 111 111221112245543322 233211234443 666665 4788887766666554
No 382
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=27.55 E-value=1.5e+02 Score=20.48 Aligned_cols=17 Identities=0% Similarity=-0.484 Sum_probs=8.3
Q ss_pred HHHhcCChHHHHHHHHh
Q 045063 120 MYSKYGLLGESVEAFKE 136 (175)
Q Consensus 120 ~~~~~g~~~~a~~~~~~ 136 (175)
..+..|..+-+..+++.
T Consensus 191 ~A~~~g~~~~v~~Ll~~ 207 (269)
T 4b93_B 191 EAVIEKHVFVVELLLLH 207 (269)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHC
Confidence 33455555555444443
No 383
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=26.92 E-value=2.3e+02 Score=23.47 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=22.6
Q ss_pred CCHhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045063 74 LTAYTFTPVLGACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 74 ~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~~ 104 (175)
.+..--..++.+++...+.+....+++....
T Consensus 647 ~~~~~~~~~l~al~~~~~~~~~~~~l~~~~~ 677 (780)
T 1z5h_A 647 DRDEDRVRIISAFGKLKSNTDLSTVYGMVEK 677 (780)
T ss_dssp CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccCCCHHHHHHHHHHHhc
Confidence 3444556778888888888888888877765
No 384
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.87 E-value=84 Score=17.15 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHhCC-CcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC
Q 045063 41 LSSLNSQLFSYTRSR-NFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA 91 (175)
Q Consensus 41 ~~~~~~li~~~~~~g-~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~ 91 (175)
+..-..++..+.+.+ ..-.+.++++.+.+.+...+..|.--.++.+.+.|-
T Consensus 16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344456667776654 567788888888777666666666666666666554
No 385
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=26.65 E-value=1.1e+02 Score=18.48 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=36.1
Q ss_pred hHHHHHHHHHh--cCCC-----------CCHhhHHHHHHHHhcCC---CchhHHHHHHHHHHhCC
Q 045063 59 ATWALFCYMHS--TCLN-----------LTAYTFTPVLGACSALP---APERGKQVHALMIKGGT 107 (175)
Q Consensus 59 ~a~~l~~~m~~--~~~~-----------~~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~ 107 (175)
+-.+++.+|.. .|++ |+..+=+.+++++.+.+ +.++|..+.+.+.+.|+
T Consensus 7 ~l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 7 GLGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp THHHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCe
Confidence 55678888873 4665 45556778888888766 45788888888888886
No 386
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=26.57 E-value=86 Score=25.05 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=37.7
Q ss_pred CchhHHHHHHHHHh--CCCcchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHhCCCcchHHHHH
Q 045063 40 DLSSLNSQLFSYTR--SRNFPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKGGTDSEPVVKTA 116 (175)
Q Consensus 40 ~~~~~~~li~~~~~--~g~~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 116 (175)
+...|..-|..+.. ..+.+.......+.... ++.+. .---=++..|++.|-++.|+.++..+-..-+ -+...+ .
T Consensus 478 ~~sLW~vgI~yL~~~~~~~~~~gr~~IselLpr-~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l-~~g~~g-e 554 (570)
T 3f3f_C 478 DKELWPVAIGLIALSATGTRSAKKMVIAELLPH-YPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQML-SAHNII-E 554 (570)
T ss_dssp CTTTHHHHHHHHHHCSSSCHHHHHHHHHHHGGG-CCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC------------
T ss_pred CCcchhHHHHHHhcCCccchhHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHH-HCccHH-H
Confidence 33445555555443 33444566666666554 33332 2445566778888888888888777764432 233455 5
Q ss_pred HHHHHHhcCChHHH
Q 045063 117 LMDMYSKYGLLGES 130 (175)
Q Consensus 117 li~~~~~~g~~~~a 130 (175)
-+..|+|+|+++..
T Consensus 555 AL~~f~rA~~~~~V 568 (570)
T 3f3f_C 555 SIANFSRAGKYELV 568 (570)
T ss_dssp --------------
T ss_pred HHHHHHHcCChhhc
Confidence 56677888877654
No 387
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=26.55 E-value=52 Score=17.37 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=16.4
Q ss_pred CCcchHHHHHHHHHhc-CCCCCH
Q 045063 55 RNFPATWALFCYMHST-CLNLTA 76 (175)
Q Consensus 55 g~~~~a~~l~~~m~~~-~~~~~~ 76 (175)
-|++.|...|.++... .++|++
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 4888999999998765 465554
No 388
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=26.24 E-value=1.1e+02 Score=18.38 Aligned_cols=59 Identities=12% Similarity=0.100 Sum_probs=31.3
Q ss_pred CchhHHHHHHHHHhCCCcchHHHHHHHHHh-cCCCCCHhhHHHHHHHHhcCCCchhHHHHHHHHH
Q 045063 40 DLSSLNSQLFSYTRSRNFPATWALFCYMHS-TCLNLTAYTFTPVLGACSALPAPERGKQVHALMI 103 (175)
Q Consensus 40 ~~~~~~~li~~~~~~g~~~~a~~l~~~m~~-~~~~~~~~t~~~ll~~~~~~~~~~~a~~~~~~m~ 103 (175)
|......++..+.-. ++.|+++.++..+ .|+ ...++..++....+.|-++.. +.|..|.
T Consensus 20 ~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~~m~ 79 (119)
T 1wty_A 20 DEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWLEML 79 (119)
T ss_dssp CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHHHHH
T ss_pred CHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 444445555555443 5566666666543 355 355566666666666655444 3344443
No 389
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=25.77 E-value=1.1e+02 Score=22.69 Aligned_cols=22 Identities=0% Similarity=-0.094 Sum_probs=13.2
Q ss_pred hhhhhcCCCChhHHHHHhhhcc
Q 045063 16 ISIADALPKRYVYTHQVFDEIS 37 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~ 37 (175)
.|..-+..|+++.+..+++.-.
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~ 38 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGA 38 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHcCC
Confidence 4444556677777777766543
No 390
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=25.75 E-value=42 Score=23.87 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063 114 KTALMDMYSKYGLLGESVEAFKEIEFK 140 (175)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (175)
-|.++..|...|+++.|.++++.++..
T Consensus 37 ~n~l~R~FL~~gkl~AAr~l~~rlp~~ 63 (270)
T 3cqc_A 37 GNAIMRKFLASKKHEAAKEVFVKIPQD 63 (270)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHCChH
Confidence 388889999999999999999986653
No 391
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=25.45 E-value=62 Score=23.00 Aligned_cols=24 Identities=17% Similarity=0.073 Sum_probs=17.3
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHH
Q 045063 78 TFTPVLGACSALPAPERGKQVHAL 101 (175)
Q Consensus 78 t~~~ll~~~~~~~~~~~a~~~~~~ 101 (175)
--|.|+.-|...|++..|++++..
T Consensus 36 ~~n~l~R~FL~~gkl~AAr~l~~r 59 (270)
T 3cqc_A 36 QGNAIMRKFLASKKHEAAKEVFVK 59 (270)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHH
Confidence 346667777778888888777764
No 392
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.44 E-value=1.2e+02 Score=18.52 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=39.2
Q ss_pred hHHHHHHHHhcCCC---ch----hHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 045063 78 TFTPVLGACSALPA---PE----RGKQVHALMIKGGTDSEPVVKTALMDMYSKYGLLGESVEAFKEIEFK 140 (175)
Q Consensus 78 t~~~ll~~~~~~~~---~~----~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (175)
++..+++.|...-. .+ +...+|+.+....+.|++..--.-|......++++.|..+.-.+...
T Consensus 21 ~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 21 PLEQALEDCHGHTKKQVCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 45556665543221 12 23355666666677776655444555567899999999998876643
No 393
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.05 E-value=2.3e+02 Score=21.59 Aligned_cols=61 Identities=5% Similarity=-0.082 Sum_probs=39.5
Q ss_pred HHHHHHh---CCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCC-----chhHHHHHHHHHHhCC
Q 045063 47 QLFSYTR---SRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPA-----PERGKQVHALMIKGGT 107 (175)
Q Consensus 47 li~~~~~---~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~ 107 (175)
+|+++.+ .++.+.|+..+.+|.+.|..|....-..+..+.-..|. +..|...++....-|.
T Consensus 258 ~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 258 LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 4555543 46888888888888888888877666666666666553 2344455555545454
No 394
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=25.04 E-value=1.4e+02 Score=19.02 Aligned_cols=24 Identities=4% Similarity=-0.096 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYM 67 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m 67 (175)
++.++..+...|-+++.+.-+.+|
T Consensus 10 ~~~~~~~l~~~g~LD~~f~qL~~L 33 (153)
T 3us6_A 10 WVDYIKSMFMEGFLDGQFLQLQQL 33 (153)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHhcccccchHHHHHHHHHh
Confidence 445556666666666554444444
No 395
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=24.63 E-value=39 Score=20.07 Aligned_cols=41 Identities=7% Similarity=0.003 Sum_probs=23.1
Q ss_pred hhhhhcCCCChhHHHHHhhhccCC-CchhHHHHHHHHHhCCC
Q 045063 16 ISIADALPKRYVYTHQVFDEISHG-DLSSLNSQLFSYTRSRN 56 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~-~~~~~~~li~~~~~~g~ 56 (175)
+.......|..+.|..+++.+... ....|..++.++-+.|.
T Consensus 49 I~a~~~~~G~~~aa~~LL~~L~r~~~~gWf~~fl~AL~~~g~ 90 (100)
T 2lwd_A 49 ILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALEKERN 90 (100)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCTHHHHHHHHHHHHHTC
T ss_pred HHHHHHccChHHHHHHHHHHHHhcCcCCcHHHHHHHHHHcCC
Confidence 334445556666666666665442 23556666666665553
No 396
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=24.59 E-value=1.8e+02 Score=20.09 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=14.1
Q ss_pred hhhhhcCCCChhHHHHHhhhc
Q 045063 16 ISIADALPKRYVYTHQVFDEI 36 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~ 36 (175)
.|...+..|+.+.+..+++.-
T Consensus 62 ~L~~Aa~~g~~~~v~~Ll~~g 82 (285)
T 3d9h_A 62 PMHEAAIHGHQLSLRNLISQG 82 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHCC
Confidence 455556677777777777653
No 397
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=24.24 E-value=1.1e+02 Score=21.36 Aligned_cols=79 Identities=4% Similarity=0.076 Sum_probs=53.3
Q ss_pred hhHHHHHhhhccCC-----------CchhHHHHHHHHHhCC---------CcchHHHHHHHHHhcCCCC-CHhhHHHHHH
Q 045063 26 YVYTHQVFDEISHG-----------DLSSLNSQLFSYTRSR---------NFPATWALFCYMHSTCLNL-TAYTFTPVLG 84 (175)
Q Consensus 26 ~~~a~~~f~~~~~~-----------~~~~~~~li~~~~~~g---------~~~~a~~l~~~m~~~~~~~-~~~t~~~ll~ 84 (175)
.+.|..+...|--+ ...-|..+-.+|.+.| +.+.-..+++.-++.|++- =.+.|+++++
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 46677777766431 3445788888888876 4466667777777776542 3357777777
Q ss_pred HHhcCCCchhHHHHHHHHHH
Q 045063 85 ACSALPAPERGKQVHALMIK 104 (175)
Q Consensus 85 ~~~~~~~~~~a~~~~~~m~~ 104 (175)
--.-.-+++++.+++..+++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 66666678888888877765
No 398
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=23.74 E-value=1.1e+02 Score=18.91 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhHHHH
Q 045063 43 SLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERGKQV 98 (175)
Q Consensus 43 ~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a~~~ 98 (175)
.|.-.|..-+.+|+.+-|.+++.-..+.| +...|.+.|-.|...-+++.+.++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 34455555556666666666666665553 444566666666655555555443
No 399
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=23.66 E-value=1e+02 Score=19.97 Aligned_cols=25 Identities=8% Similarity=0.102 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHH
Q 045063 44 LNSQLFSYTRSRNFPATWALFCYMH 68 (175)
Q Consensus 44 ~~~li~~~~~~g~~~~a~~l~~~m~ 68 (175)
...+|.-|...|+.++|..-++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 4678889999999999999999974
No 400
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=22.69 E-value=1.4e+02 Score=18.21 Aligned_cols=49 Identities=6% Similarity=0.065 Sum_probs=35.1
Q ss_pred hHHHHHHHHHh--cCCC-----------CCHhhHHHHHHHHhcCC---CchhHHHHHHHHHHhCC
Q 045063 59 ATWALFCYMHS--TCLN-----------LTAYTFTPVLGACSALP---APERGKQVHALMIKGGT 107 (175)
Q Consensus 59 ~a~~l~~~m~~--~~~~-----------~~~~t~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~ 107 (175)
....++.+|.. .|++ |+..+=..+++++.+.+ +.++|..+-+.|.+.|+
T Consensus 7 ~l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~GsdlVdWL~~~~~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 7 GLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp HHHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHhCccCCCeeeeeEEccEEccceeehHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 45667777764 2554 55667788888888765 45788888888888776
No 401
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=22.61 E-value=1.2e+02 Score=17.31 Aligned_cols=14 Identities=0% Similarity=-0.024 Sum_probs=6.3
Q ss_pred CCCChhHHHHHhhh
Q 045063 22 LPKRYVYTHQVFDE 35 (175)
Q Consensus 22 ~~~~~~~a~~~f~~ 35 (175)
+.|+.+.+..+++.
T Consensus 11 ~~~~~~~v~~Ll~~ 24 (126)
T 1n0r_A 11 RNGHLEVVKLLLEA 24 (126)
T ss_dssp HHTCHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHc
Confidence 34444444444443
No 402
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=22.50 E-value=2e+02 Score=19.99 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=9.9
Q ss_pred CChHHHHHHHHHHHh-ccc
Q 045063 156 GLAKEAFGVFQAMTR-ERV 173 (175)
Q Consensus 156 g~~~~a~~~~~~m~~-~g~ 173 (175)
|+.++|.+++.++.. .|.
T Consensus 241 ~~~~~a~~~l~~l~~~~g~ 259 (319)
T 2chq_A 241 GNFMEARELLDRLMVEYGM 259 (319)
T ss_dssp TCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHcCC
Confidence 555566665555554 444
No 403
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=22.42 E-value=2e+02 Score=20.04 Aligned_cols=111 Identities=9% Similarity=0.028 Sum_probs=50.7
Q ss_pred hhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHh---hHHHHHHHHhcC
Q 045063 17 SIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAY---TFTPVLGACSAL 89 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~---t~~~ll~~~~~~ 89 (175)
|...++.|+.+.+..++..... .|..-++.|..+ ++.|+.+ +.+.+.+.|..++.. -++. +...+..
T Consensus 28 L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A-~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~ 101 (351)
T 3utm_A 28 LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA-AGYNRVR----IVQLLLQHGADVHAKDKGGLVP-LHNACSY 101 (351)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH-HHTTCHH----HHHHHHHTTCCTTCCCTTCCCH-HHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCccCCCCCcH-HHHHHHC
Confidence 4444566777777777765321 233333333333 3445533 333334445544332 2223 3333444
Q ss_pred CCchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhc
Q 045063 90 PAPERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 90 ~~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
|+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-
T Consensus 102 g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 147 (351)
T 3utm_A 102 GHYE----VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147 (351)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 5443 3344444455444321 112333445666666666666553
No 404
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=21.39 E-value=1.6e+02 Score=18.39 Aligned_cols=112 Identities=9% Similarity=0.036 Sum_probs=63.3
Q ss_pred hhhhcCCCChhHHHHHhhhccC----CCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhh--HHHHHHHHhcCC
Q 045063 17 SIADALPKRYVYTHQVFDEISH----GDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYT--FTPVLGACSALP 90 (175)
Q Consensus 17 l~~~~~~~~~~~a~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t--~~~ll~~~~~~~ 90 (175)
+...++.|+.+.+..+++.-.. ++...++.|..+ ++.|+. ++.+.+.+.|..++... -.+.+...+..|
T Consensus 9 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA-CREGRS----AVVEMLIMRGARINVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp HHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH-HHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH-HHcCcH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence 3445677999999999887432 344445555544 455664 34444555666665431 122334444556
Q ss_pred CchhHHHHHHHHHHhCCCcchHH--HHHHHHHHHhcCChHHHHHHHHhc
Q 045063 91 APERGKQVHALMIKGGTDSEPVV--KTALMDMYSKYGLLGESVEAFKEI 137 (175)
Q Consensus 91 ~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m 137 (175)
+.+ +.+.+.+.|..++... -.+.+...+..|+.+-+..+++.-
T Consensus 84 ~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 128 (179)
T 3f6q_A 84 HRD----IVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANG 128 (179)
T ss_dssp CHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHH----HHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 544 4455556666555432 123445556778887777777653
No 405
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.29 E-value=4.5e+02 Score=23.66 Aligned_cols=80 Identities=10% Similarity=-0.014 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCC---------------cchHHHHHHHHHhcCCCCCH-hhHHHHHHHHhcCCCchhHHHHHHHHHHhCC
Q 045063 44 LNSQLFSYTRSRN---------------FPATWALFCYMHSTCLNLTA-YTFTPVLGACSALPAPERGKQVHALMIKGGT 107 (175)
Q Consensus 44 ~~~li~~~~~~g~---------------~~~a~~l~~~m~~~~~~~~~-~t~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 107 (175)
-+.||.++++.|. .++-.+.|.+..+. +.++. ......+......+.+..|.+++.++.+..
T Consensus 1237 k~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k- 1314 (1354)
T 3lxu_X 1237 KNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK- 1314 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 5888888888542 12223333333333 22222 222222333334555556666655555543
Q ss_pred CcchHHHHHHHHHHHhcCC
Q 045063 108 DSEPVVKTALMDMYSKYGL 126 (175)
Q Consensus 108 ~~~~~~~~~li~~~~~~g~ 126 (175)
|+...|..++..+...|.
T Consensus 1315 -~~~~~~~~~~~~~~~l~w 1332 (1354)
T 3lxu_X 1315 -RTRDHFVELAAINGALGH 1332 (1354)
T ss_dssp -CCHHHHHHHHHHHHHHSC
T ss_pred -ccHHHHHHHHHHHHHcCC
Confidence 455555555555544443
No 406
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.26 E-value=1.4e+02 Score=17.75 Aligned_cols=78 Identities=5% Similarity=-0.005 Sum_probs=51.3
Q ss_pred hhhhhcCCCChhHHHHHhhhccCCCchhHHHHHHHHHhCCCcchHHHHHHHHHhcCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 16 ISIADALPKRYVYTHQVFDEISHGDLSSLNSQLFSYTRSRNFPATWALFCYMHSTCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 16 ll~~~~~~~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~l~~~m~~~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
-+.++++.|+.. +..+.+.+..++...-...+.++.+.|+ .++...+.+..+. ++..+-...+.++.+.++.+..
T Consensus 32 A~~~L~~~~~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~-~~a~~~L~~~L~d---~~~~VR~~A~~aL~~~~~~~a~ 106 (131)
T 1te4_A 32 VSTALSRMGDEA-FEPLLESLSNEDWRIRGAAAWIIGNFQD-ERAVEPLIKLLED---DSGFVRSGAARSLEQIGGERVR 106 (131)
T ss_dssp CCSSTTSCSSTT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS-HHHHHHHHHHHHH---CCTHHHHHHHHHHHHHCSHHHH
T ss_pred HHHHHHHhCchH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCcHHHH
Confidence 455556666654 4666666777888888888889998886 4566666666543 5556666667777777764433
Q ss_pred HHH
Q 045063 96 KQV 98 (175)
Q Consensus 96 ~~~ 98 (175)
..+
T Consensus 107 ~~L 109 (131)
T 1te4_A 107 AAM 109 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 407
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=20.33 E-value=1.5e+02 Score=17.78 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHhCCCcchHHHHHHHHH-h-cCCCCCHhhHHHHHHHHhcCCCchhH
Q 045063 41 LSSLNSQLFSYTRSRNFPATWALFCYMH-S-TCLNLTAYTFTPVLGACSALPAPERG 95 (175)
Q Consensus 41 ~~~~~~li~~~~~~g~~~~a~~l~~~m~-~-~~~~~~~~t~~~ll~~~~~~~~~~~a 95 (175)
......+|..+.-. ++.|+++.++.. + .|+. ..++..++....+.|-++..
T Consensus 20 ~~~~dg~iq~fe~t--~Elawk~~k~~l~~~~g~~--~~s~rd~~r~a~~~glI~~~ 72 (119)
T 1wwp_A 20 PVERDAAIQRFEYT--FEAFWKALQAYLREKEGLE--GASPKGVIRLAREVGLLRDE 72 (119)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCC--CCSHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCch
Confidence 33445555555543 566666666654 3 2553 55666677777777766555
Done!