BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045064
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 72 SRGLSERKISRLPSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREE 131
S G E S L +C +CK +Y G+ + LPC H +HD CI WL +++C +CR+
Sbjct: 5 SSGTEEHVGSGL---ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKS 61
Query: 132 VV 133
+
Sbjct: 62 LT 63
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 87 KCAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDNENCCICREEVVV 134
+CA+C E E G+ LP CGH +H EC+ WL + C +CR VVV
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICR 129
C IC EY +GD LPC H +H C+ WL+ + C +CR
Sbjct: 43 CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCR 84
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREE 131
C +C ++E L LPC H++H +C+ WL+ N C ICR +
Sbjct: 26 CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC IC E G+ + LPC H +H C+ WL N+ C ICR ++
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 76 SERKISRLPSHK-CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133
S K+ L H+ CA+C +++ D L PC H +H +C+ WL + C +C V+
Sbjct: 5 SSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
+ +C IC LE + + + LPC H + CI W+R N C +C+ V
Sbjct: 5 AERCPIC-LE-DPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
+C IC E +TL C H + CI W++ C ICR+++
Sbjct: 55 QCIICS---EYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
+C IC E +TL C H + CI W++ C ICR+++
Sbjct: 66 QCIICS---EYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
+C IC E +TL C H + CI W++ C ICR+++
Sbjct: 55 QCIICS---EYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDI 97
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 102 ITLPCGHKYHDECIKTWLRDNENCCICREEVV 133
+ LPC H + +CI W + NC ICR ++
Sbjct: 28 LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 88 CAICKLEYERGDRLITL-PCGHKYHDECIKTWLRDNENCCICREEVVV 134
C C+ E ++ D ++ C H +H+ C+ W++ N C +C+++ VV
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 72 SRGLSERKISRLPSHKCAICKLEYERGDRLITLPCGHKYHDECIK--TWLRDNENCCICR 129
S G S L +CAIC + ++LPC H + C+K +WL + C +CR
Sbjct: 2 SSGSSGNTAPSLTVPECAIC---LQTCVHPVSLPCKHVFCYLCVKGASWL--GKRCALCR 56
Query: 130 EEV 132
+E+
Sbjct: 57 QEI 59
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 29.6 bits (65), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 88 CAICKLEY----ERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
C IC Y + G +++ CGH + +C++ L++ C CR+++
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 29.3 bits (64), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 88 CAICKLEY----ERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
C IC Y + G +++ CGH + +C++ L++ C CR+++
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 88 CAICKLEY----ERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
C IC Y + G +++ CGH + +C++ L++ C CR+++
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 88 CAICKLEY----ERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
C IC Y + G +++ CGH + +C++ L++ C CR+++
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
Score = 28.9 bits (63), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 88 CAICKLEY----ERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
C IC Y + G +++ CGH + +C++ L++ C CR+++
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVVV 134
++C IC + + PCGH++ CI +RD + C E+++
Sbjct: 26 YECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 71
>pdb|2R0Q|C Chain C, Crystal Structure Of A Serine Recombinase- Dna
Regulatory Complex
pdb|2R0Q|D Chain D, Crystal Structure Of A Serine Recombinase- Dna
Regulatory Complex
pdb|2R0Q|E Chain E, Crystal Structure Of A Serine Recombinase- Dna
Regulatory Complex
pdb|2R0Q|F Chain F, Crystal Structure Of A Serine Recombinase- Dna
Regulatory Complex
Length = 209
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 6 DEAIARALQEMEDGGTENMFIKETNGISTDANPILQ 41
D+ + R L+ ++ G E +F ++ +G S + PILQ
Sbjct: 12 DQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQ 47
>pdb|3PKZ|A Chain A, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|B Chain B, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|C Chain C, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|D Chain D, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|E Chain E, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|F Chain F, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|G Chain G, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|H Chain H, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|I Chain I, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|J Chain J, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|K Chain K, Structural Basis For Catalytic Activation Of A Serine
Recombinase
pdb|3PKZ|L Chain L, Structural Basis For Catalytic Activation Of A Serine
Recombinase
Length = 124
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 6 DEAIARALQEMEDGGTENMFIKETNGISTDANPILQ 41
D+ + R L+ ++ G E +F ++ +G S + PILQ
Sbjct: 12 DQNLERQLENLKTFGAEKIFTEKQSGKSIENRPILQ 47
>pdb|2ECM|A Chain A, Solution Structure Of The Ring Domain Of The Ring Finger
And Chy Zinc Finger Domain-Containing Protein 1 From Mus
Musculus
Length = 55
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 85 SHKCAICKLEYERGDRLIT--LPCGHKYHDECIKTWLRDNENCCIC 128
S C IC LE R++ LPCGH H C + L++ C +C
Sbjct: 5 SSGCPIC-LEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 90 ICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCICREEV 132
+CK+ E + PCGH C+ W D + C CR E+
Sbjct: 340 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 90 ICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCICREEV 132
+CK+ E + PCGH C+ W D + C CR E+
Sbjct: 28 LCKICAENDKDVKIEPCGHLMCTSCLTAWQESDGQGCPFCRCEI 71
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVVV 134
++C IC + + PCGH++ CI +RD + C E+++
Sbjct: 7 YECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 52
>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With
4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic
Acid (2,6- Difluoro-Phenyl)-Amide)
Length = 349
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 18 DGGTENMFIKETNGISTDANPILQSIQPMYQDEFYPDNMDYEEITRLEETIGNVSRG 74
D GTEN++ + + ++ A P S+ P +++ D + + ++ E + RG
Sbjct: 12 DLGTENLYFQSMSSVTASAAPGTASLVP----DYWIDGSNRDALSDFFEVESELGRG 64
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 88 CAICKLEYERGDRLI--TLPCGHKYHDECIKTWLRDNENCCIC 128
C IC LE R++ LPCGH H C + L++ C +C
Sbjct: 8 CPIC-LEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVVV 134
++C IC + + PCGH++ CI +RD + C E+++
Sbjct: 18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 101 LITLPCGHKYHDECIKTWLRD-NENCCICREEVV 133
+ T C H++ +CI T LR N+ C CR+++V
Sbjct: 68 MTTKECLHRFCADCIITALRSGNKECPTCRKKLV 101
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 106 CGHKYHDECIKTWLRD-NENCCICREEVV 133
C H++ +CI T LR N+ C CR+++V
Sbjct: 72 CLHRFCADCIITALRSGNKECPTCRKKLV 100
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 90 ICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCICREEV 132
+CK+ E + PCGH C+ +W + + C CR E+
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 90 ICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCICREEV 132
+CK+ E + PCGH C+ +W + + C CR E+
Sbjct: 336 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 379
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 33 STDANPILQSIQPMYQDEFYPDNMDYEEI 61
S++ PIL SI+P+ EF +N +Y +
Sbjct: 168 SSNGQPILCSIEPLLVGEFKKNNSNYGAV 196
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 90 ICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCICREEV 132
+CK+ E + PCGH C+ +W + + C CR E+
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 90 ICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCICREEV 132
+CK+ E + PCGH C+ +W + + C CR E+
Sbjct: 334 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377
>pdb|3LMI|A Chain A, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|B Chain B, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|C Chain C, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|D Chain D, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
Length = 307
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 33 STDANPILQSIQPMYQDEFYPDNMDYEEI 61
S++ PIL SI+P+ EF +N +Y +
Sbjct: 168 SSNGQPILCSIEPLLVGEFKKNNSNYGAV 196
>pdb|2DJ7|A Chain A, Solution Structure Of 3rd Lim Domain Of Actin-Binding Lim
Protein 3
Length = 80
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 72 SRGLSERKIS-RLPSHKCAICKLEYERGDRLITLPCGHKYHDECIK 116
S G S + I R PSH CA CK E + G L+ L ++H C K
Sbjct: 2 SSGSSGKPIKIRGPSH-CAGCKEEIKHGQSLLALD--KQWHVSCFK 44
>pdb|3LMH|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
pdb|3LMH|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
Length = 307
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 33 STDANPILQSIQPMYQDEFYPDNMDYEEI 61
S++ PIL SI+P+ EF +N +Y +
Sbjct: 168 SSNGQPILCSIEPLLVGEFKKNNSNYGAV 196
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 91 CKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
CK+ +R ++ +PCGH EC + C ICR V
Sbjct: 16 CKVCLDRAVSIVFVPCGHLVCAECAPGL----QLCPICRAPV 53
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 33 STDANPILQSIQPMYQDEFYPDNMDYEEI 61
S++ PIL SI+P+ EF +N +Y +
Sbjct: 168 SSNGQPILCSIEPLLVGEFKKNNSNYGAV 196
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 72 SRGLSERKISRLPSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCC-ICRE 130
S L + I L +C IC E +TLPC H C ++ + CC CR
Sbjct: 2 SMALPKDAIPSLSECQCGIC---MEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRR 58
Query: 131 EV 132
V
Sbjct: 59 RV 60
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 90 ICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCICREEV 132
+CK+ E + PCGH C+ +W + + C CR E+
Sbjct: 29 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 72
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVVV 134
++C IC + + PCGH++ CI +RD + C E+++
Sbjct: 18 KYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWL--RDNENCCICREEVV 133
C ICK D ++ CG+ Y DECI+T L D C C + V
Sbjct: 18 CLICKDIMT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 90 ICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCICREEV 132
+CK+ E + PCGH C+ +W + + C CR E+
Sbjct: 26 LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 69
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWL--RDNENCCICREEVV 133
C ICK D ++ CG+ Y DECI+T L D C C + V
Sbjct: 16 CLICK--DIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61
>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUU|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P212121
pdb|2UUV|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|B Chain B, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|C Chain C, Alkyldihydroxyacetonephosphate Synthase In P1
pdb|2UUV|D Chain D, Alkyldihydroxyacetonephosphate Synthase In P1
Length = 584
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 51 FYPDNMDYEEITRLEETIGNVSRGLSERKISRLP-SHKCAICKLEYERGDRLITLPCGHK 109
F PD + +++ R+ T G R L +I ++ + + +E +RL+ L HK
Sbjct: 102 FLPDQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQL--AHK 159
Query: 110 YH 111
Y+
Sbjct: 160 YN 161
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNE 123
C++C LEY + +I CGH + CI W D E
Sbjct: 17 SCSVC-LEYLKEPVIIE--CGHNFCKACITRWWEDLE 50
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 106 CGHKYHDECIKTWLRD-NENCCICREEVV 133
C H++ +CI T LR N+ C CR+++V
Sbjct: 53 CLHRFCADCIITALRSGNKECPTCRKKLV 81
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 88 CAICKLEYERGDRLITLPCG-----HKYHDECIKTWLRDNEN-CC-ICREEVVV 134
C IC E + LIT PC H H C++ W++ ++ CC +C+ E ++
Sbjct: 18 CRICHCEGDDESPLIT-PCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70
>pdb|2AHO|B Chain B, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|3CW2|C Chain C, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|D Chain D, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|G Chain G, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|H Chain H, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3V11|B Chain B, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 266
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 42 SIQPMYQDEFYPDNMDYEEITRLEETIGNVSRGLSERKISRLPSHKCAICKLEYERGD 99
S++ + DE N+ +++I RL++ + VS+ L K+S + + KLE + GD
Sbjct: 81 SLKKVTDDERRKKNLQWKKIQRLDKILELVSQKL---KLSEKDAWEQVAWKLEAKYGD 135
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 106 CGHKYHDECIKTWLRDNENC 125
C H +H CI WL+ + C
Sbjct: 75 CNHAFHFHCISRWLKTRQVC 94
>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase In Complex With
Mg-Adp-Alf3
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
Arsenite-Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
Length = 589
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 7 EAIARALQEMEDGGTENMFIKETNGISTDANPILQSIQPM---YQDEFYPDNMDYEEITR 63
EA+A ++ T+ +F++ N + A L S QP+ DE+ D ++
Sbjct: 258 EALANLPADLAGLPTDTLFLQPVNMVGVSALSRLLSTQPVASPSSDEYLQQRPDIPSLSA 317
Query: 64 LEETIGNVSRGL 75
L + I GL
Sbjct: 318 LVDDIARNEHGL 329
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 106 CGHKYHDECIKTWLRDNENC 125
C H +H CI WL+ + C
Sbjct: 67 CNHAFHFHCISRWLKTRQVC 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,383,004
Number of Sequences: 62578
Number of extensions: 173243
Number of successful extensions: 474
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 74
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)