BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045064
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT17|BBR_ARATH E3 ubiquitin ligase BIG BROTHER-related OS=Arabidopsis thaliana
GN=BBR PE=2 SV=1
Length = 340
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 76/147 (51%), Gaps = 23/147 (15%)
Query: 5 NDEAIARALQEMEDGGTENMFIKETNGISTDANPILQSIQPMYQ------DEFYPDNMDY 58
+DEA ARALQE E E + +S AN +++ ++ DE PD + Y
Sbjct: 190 DDEAYARALQEAE----ERDMAARLSALSGLANRVVEDLEDESHTSQDAWDEMDPDELSY 245
Query: 59 EEITRLEETIGNVSRGLSERKISRLPSHK-------------CAICKLEYERGDRLITLP 105
EE+ L + +G SRGLS I+ LPS + C IC+L+YE + LI LP
Sbjct: 246 EELLALGDIVGTESRGLSADTIASLPSKRYKEGDNQNGTNESCVICRLDYEDDEDLILLP 305
Query: 106 CGHKYHDECIKTWLRDNENCCICREEV 132
C H YH ECI WL+ N+ C +C EV
Sbjct: 306 CKHSYHSECINNWLKINKVCPVCSAEV 332
>sp|Q8L649|BB_ARATH E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana GN=BB PE=1
SV=1
Length = 248
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 21/148 (14%)
Query: 1 MADDNDEAIARALQEMEDGGTENMFIKETNGISTDANPILQSIQPMYQDEFYPDNMDYEE 60
+ADD + +AR++Q G + + I+ + +P S Q +QD+ PD M YEE
Sbjct: 101 VADDPENTVARSVQI----GDTDEHSEAEECIANEHDP--DSPQVSWQDDIDPDTMTYEE 154
Query: 61 ITRLEETIGNVSRGLSERKISRLPSHK---------------CAICKLEYERGDRLITLP 105
+ L E +G SRGLS+ I LP+ K C IC+L+Y+ G+R + LP
Sbjct: 155 LVELGEAVGTESRGLSQELIETLPTKKYKFGSIFSRKRAGERCVICQLKYKIGERQMNLP 214
Query: 106 CGHKYHDECIKTWLRDNENCCICREEVV 133
C H YH ECI WL N+ C +C EV
Sbjct: 215 CKHVYHSECISKWLSINKVCPVCNSEVF 242
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1
Length = 518
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 38 PILQSIQPMYQDEFYPDN---MDYEEITRLEETIGNVS-RGLSERKISRLPSHK------ 87
P+ ++ P + E ++ +YE + L E +G RGL++ I +LPS++
Sbjct: 400 PVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPSNH 459
Query: 88 ------CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREE 131
C +C ++E L LPC H++H +C+ WL+ N C ICR +
Sbjct: 460 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPICRAD 509
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 57 DYEEITRLEETIGNVS-RGLSERKISRLPSHK------------CAICKLEYERGDRLIT 103
+YE + L E +G+ RGL++ I +LPS++ C +C ++E L
Sbjct: 336 NYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEARQLLRV 395
Query: 104 LPCGHKYHDECIKTWLRDNENCCICREE 131
LPC H++H +C+ WL+ N C ICR +
Sbjct: 396 LPCNHEFHTKCVDKWLKANRTCPICRAD 423
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4
Length = 515
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 16/110 (14%)
Query: 38 PILQSIQPMYQDEFYPDN---MDYEEITRLEETIGNVS-RGLSERKISRLPSHK------ 87
P+ ++ P + E ++ +YE + L E +G RGL++ I +LPS++
Sbjct: 397 PVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNH 456
Query: 88 ------CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREE 131
C +C ++E L LPC H++H +C+ WL+ N C ICR +
Sbjct: 457 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 506
>sp|Q3UHJ8|RNF44_MOUSE RING finger protein 44 OS=Mus musculus GN=Rnf44 PE=2 SV=1
Length = 407
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 57 DYEEITRLEETIGNVS-RGLSERKISRLPSHK------------CAICKLEYERGDRLIT 103
+YE + L E +G+ RGL++ I +LPS++ C +C ++E L
Sbjct: 311 NYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRV 370
Query: 104 LPCGHKYHDECIKTWLRDNENCCICREE 131
LPC H++H +C+ WL+ N C ICR +
Sbjct: 371 LPCNHEFHAKCVDKWLKANRTCPICRAD 398
>sp|Q08CG8|RNF44_DANRE RING finger protein 44 OS=Danio rerio GN=rnf44 PE=2 SV=1
Length = 448
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 13/88 (14%)
Query: 57 DYEEITRLEETIGNVS-RGLSERKISRLPSHK------------CAICKLEYERGDRLIT 103
+YE + L E +G RGL++ I +LPS++ C +C ++E L
Sbjct: 352 NYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNLENHQSEQTLCVVCFSDFESRQLLRV 411
Query: 104 LPCGHKYHDECIKTWLRDNENCCICREE 131
LPC H++H +C+ WL+ N C ICR +
Sbjct: 412 LPCNHEFHAKCVDKWLKTNRTCPICRAD 439
>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a
PE=1 SV=1
Length = 622
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
Query: 73 RGLSERKISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNE 123
RGL++ +I L + C++C EY G++L LPC H+YH CI WL +N
Sbjct: 544 RGLTKEQIDNLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENS 603
Query: 124 NCCICREEVVV 134
C ICR V+V
Sbjct: 604 TCPICRRAVLV 614
>sp|Q4V7B8|RNF44_RAT RING finger protein 44 OS=Rattus norvegicus GN=Rnf44 PE=2 SV=1
Length = 350
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 13/89 (14%)
Query: 57 DYEEITRLEETIGNV-SRGLSERKISRLPSHK------------CAICKLEYERGDRLIT 103
+YE + L E +G+ RGL++ I +LPS++ C +C ++E L
Sbjct: 254 NYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSEQTLCVVCFSDFEVRQLLRV 313
Query: 104 LPCGHKYHDECIKTWLRDNENCCICREEV 132
LPC H++H +C+ WL+ N C ICR +
Sbjct: 314 LPCNHEFHAKCVDKWLKANRTCPICRADA 342
>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12
PE=2 SV=1
Length = 639
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 64 LEETIGNVSRGLSERKISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDEC 114
L E + RGL++ +I L + C++C EY G++L LPC H+YH C
Sbjct: 552 LNEDDDDQPRGLTKEQIDNLSTRNFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHC 611
Query: 115 IKTWLRDNENCCICREEVVV 134
I WL +N C ICR V+V
Sbjct: 612 IDRWLSENSTCPICRRAVLV 631
>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b
PE=2 SV=1
Length = 757
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 64 LEETIGNVSRGLSERKISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDEC 114
L E + RGL++ +I L + C++C EY G++L LPC H+YH C
Sbjct: 670 LNEDDDDQPRGLTKEQIDNLSTRNYGENDALKTCSVCITEYTEGNKLRKLPCSHEYHIHC 729
Query: 115 IKTWLRDNENCCICREEVVV 134
I WL +N C ICR V+V
Sbjct: 730 IDRWLSENSTCPICRRAVLV 749
>sp|Q67YI6|ATL65_ARATH RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2
SV=2
Length = 411
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 79 KISRLPSHKCAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDNENCCICREEVV 133
K S CA+C LE+E GD + TLP C H +H ECI WLR + NC +CR ++
Sbjct: 147 KTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202
>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13
PE=2 SV=1
Length = 380
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 79 KISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCIC 128
++ +LP HK CAIC EYE GD+L LPC H YH +C+ WL + + C +C
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 129 REEVV 133
+++VV
Sbjct: 282 KQKVV 286
>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1
SV=2
Length = 381
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 79 KISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCIC 128
++ +LP HK CAIC EYE GD+L LPC H YH +C+ WL + + C +C
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 129 REEVV 133
+++VV
Sbjct: 282 KQKVV 286
>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1
SV=1
Length = 381
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 79 KISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCIC 128
++ +LP HK CAIC EYE GD+L LPC H YH +C+ WL + + C +C
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 129 REEVV 133
+++VV
Sbjct: 282 KQKVV 286
>sp|Q9WTV7|RNF12_MOUSE E3 ubiquitin-protein ligase RLIM OS=Mus musculus GN=Rlim PE=1 SV=2
Length = 600
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133
C++C EY G++L LPC H+YH CI WL +N C ICR V+
Sbjct: 546 CSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVL 591
>sp|Q5R476|RN111_PONAB E3 ubiquitin-protein ligase Arkadia OS=Pongo abelii GN=RNF111 PE=2
SV=1
Length = 986
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 53 PDNMDYEEITRLEETIGNVSRGLSERKISRL------------------------PSHKC 88
P ++EE+ LEE +GNV+RG S+ I R KC
Sbjct: 875 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKRKLHCKQDGEEGTEEDTEEKC 934
Query: 89 AICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
IC E G+ + LPC H +H C+ WL N+ C ICR ++
Sbjct: 935 TICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 978
>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2
SV=1
Length = 381
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 79 KISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCIC 128
++ +LP HK CAIC EYE GD+L LPC H YH +C+ WL + + C +C
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 129 REEVV 133
+++VV
Sbjct: 282 KQKVV 286
>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1
SV=1
Length = 381
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 79 KISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCIC 128
++ +LP HK CAIC EYE GD+L LPC H YH +C+ WL + + C +C
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 129 REEVV 133
+++VV
Sbjct: 282 KQKVV 286
>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1
Length = 380
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 79 KISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNENCCIC 128
++ +LP HK CAIC EYE GD+L LPC H YH +C+ WL + + C +C
Sbjct: 222 QLKKLPVHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVC 281
Query: 129 REEVV 133
+++VV
Sbjct: 282 KQKVV 286
>sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RLIM OS=Homo sapiens GN=RLIM PE=1 SV=3
Length = 624
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 64 LEETIGNVSRGLSERKISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDEC 114
L E + RGL++ +I L C++C EY G++L LPC H+YH C
Sbjct: 537 LNEDDDDQPRGLTKEQIDNLAMRSFGENDALKTCSVCITEYTEGNKLRKLPCSHEYHVHC 596
Query: 115 IKTWLRDNENCCICREEVV 133
I WL +N C ICR V+
Sbjct: 597 IDRWLSENSTCPICRRAVL 615
>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2
SV=1
Length = 347
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 75 LSERKISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNEN 124
L++ ++ ++P+H CAIC EYE GD+L LPC H YH C+ WL + +
Sbjct: 208 LTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKT 267
Query: 125 CCICREEV 132
C IC++ V
Sbjct: 268 CPICKQPV 275
>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1
SV=1
Length = 350
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 75 LSERKISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNEN 124
L++ ++ ++P+H CAIC EYE GD+L LPC H YH C+ WL + +
Sbjct: 208 LTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKT 267
Query: 125 CCICREEV 132
C IC++ V
Sbjct: 268 CPICKQPV 275
>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167
PE=2 SV=1
Length = 349
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 75 LSERKISRLPSHK---------CAICKLEYERGDRLITLPCGHKYHDECIKTWL-RDNEN 124
L++ ++ ++P+H CAIC EYE GD+L LPC H YH C+ WL + +
Sbjct: 208 LTKEQLKQIPTHDYQKGDEYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKT 267
Query: 125 CCICREEV 132
C IC++ V
Sbjct: 268 CPICKQPV 275
>sp|Q99ML9|RN111_MOUSE E3 ubiquitin-protein ligase Arkadia OS=Mus musculus GN=Rnf111 PE=1
SV=1
Length = 989
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 32/112 (28%)
Query: 53 PDNMDYEEITRLEETIGNVSRGLSERKISRL----------------------------- 83
P ++EE+ LEE +GNV+RG S+ I R
Sbjct: 870 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGT 929
Query: 84 ---PSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC IC E G+ + LPC H +H C+ WL N+ C ICR ++
Sbjct: 930 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 981
>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis
GN=rnf111-a PE=2 SV=1
Length = 923
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 32/112 (28%)
Query: 53 PDNMDYEEITRLEETIGNVSRGLSERKISRL----------------------------- 83
P ++EE+ LEE +GNV+RG S+ I R
Sbjct: 804 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAP 863
Query: 84 ---PSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC IC E G+ + LPC H +H C+ WL N+ C ICR ++
Sbjct: 864 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 915
>sp|Q6ZNA4|RN111_HUMAN E3 ubiquitin-protein ligase Arkadia OS=Homo sapiens GN=RNF111 PE=1
SV=3
Length = 994
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 32/112 (28%)
Query: 53 PDNMDYEEITRLEETIGNVSRGLSERKISRL----------------------------- 83
P ++EE+ LEE +GNV+RG S+ I R
Sbjct: 875 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVTTDWFSQRKLHCKQDGEEGT 934
Query: 84 ---PSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC IC E G+ + LPC H +H C+ WL N+ C ICR ++
Sbjct: 935 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 986
>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=Xenopus laevis GN=rnf111-c
PE=2 SV=1
Length = 967
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 32/112 (28%)
Query: 53 PDNMDYEEITRLEETIGNVSRGLSERKISRL----------------------------- 83
P ++EE+ LEE +GNV+RG S+ I R
Sbjct: 848 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAP 907
Query: 84 ---PSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC IC E G+ + LPC H +H C+ WL N+ C ICR ++
Sbjct: 908 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 959
>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis GN=rnf111-b
PE=2 SV=1
Length = 959
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 32/112 (28%)
Query: 53 PDNMDYEEITRLEETIGNVSRGLSERKISRLP---------------------------- 84
P ++EE+ LEE +GNV+RG S+ I R
Sbjct: 840 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYKKVSTDWFSQRKLHSKQDGEEAT 899
Query: 85 ----SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC IC E G+ + LPC H +H C+ WL N+ C ICR ++
Sbjct: 900 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 951
>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xenopus tropicalis GN=rnf111
PE=2 SV=1
Length = 954
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 32/112 (28%)
Query: 53 PDNMDYEEITRLEETIGNVSRGLSERKISRLP---------------------------- 84
P ++EE+ LEE +GNV+RG S+ I R
Sbjct: 835 PFRGNFEELIHLEERLGNVNRGASQGTIERCTYPHKYEKVSTDWFSQRKLHSKQDGEEAT 894
Query: 85 ----SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC IC E G+ + LPC H +H C+ WL N+ C ICR ++
Sbjct: 895 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 946
>sp|Q9LM69|ATL80_ARATH RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=1
SV=1
Length = 197
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 65 EETIGNVSRGLSERKISRLPS-------------HKCAICKLEYERGDRLITLP-CGHKY 110
+ + ++GL ++ + LP +CAIC E+ GD L LP CGH +
Sbjct: 75 QPPVAAANKGLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGF 134
Query: 111 HDECIKTWLRDNENCCICREEVVV 134
H CI TWL + +C CR+ +VV
Sbjct: 135 HVACIDTWLGSHSSCPSCRQILVV 158
>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1
Length = 326
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 24/132 (18%)
Query: 22 ENMFIKETNGISTDANPILQSIQPMYQDEFYPDNMDYEE--------ITRLEETIGNVSR 73
E + + NGI T A + S+ P + + MDY IT+L N
Sbjct: 147 EGIIQQLVNGIITPAT--IPSLGPW--GVLHSNPMDYAWGANGLDAIITQLLNQFENTGP 202
Query: 74 GLSER-KISRLPS-----------HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD 121
+++ KI LP+ +C +CK +Y G+R+ LPC H +HD CI WL
Sbjct: 203 PPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQ 262
Query: 122 NENCCICREEVV 133
+++C +CR+ +
Sbjct: 263 HDSCPVCRKSLT 274
>sp|Q9C1X4|YKW3_SCHPO Uncharacterized RING finger protein P32A8.03c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAP32A8.03c PE=4 SV=1
Length = 513
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
+C IC ++ D +I LPC H +H+ CIK WLR N C ICR V
Sbjct: 395 ECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTCAICRAPV 440
>sp|Q8WWF5|ZNRF4_HUMAN Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3
Length = 429
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWLRD--NENCCICREEV 132
CAIC EYE GD+L LPC H YH +CI W +C +C++ V
Sbjct: 309 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q4R6Y5|ZNRF4_MACFA Zinc/RING finger protein 4 OS=Macaca fascicularis GN=ZNRF4 PE=2
SV=1
Length = 429
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWLRD--NENCCICREEV 132
CAIC EYE GD+L LPC H YH +CI W +C +C++ V
Sbjct: 309 CAICLDEYEEGDQLKILPCSHTYHCKCIDPWFSQAPRRSCPVCKQSV 355
>sp|Q9VE61|RN181_DROME E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila
melanogaster GN=CG7694 PE=2 SV=1
Length = 147
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 76 SERKISRLPSHK-----------CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNEN 124
S+R I LP H+ C++CK E G + LPC H++H+ECI WL+ +
Sbjct: 47 SKRAILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNS 106
Query: 125 CCICREEV 132
C +CR E+
Sbjct: 107 CPLCRYEL 114
>sp|Q8LC69|ATL8_ARATH RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2
SV=2
Length = 185
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 68 IGNVSRGLSERKISRLPSH-------------KCAICKLEYERGDRLITLP-CGHKYHDE 113
+ ++GL ++ + LP +CAIC E+ GD L LP CGH +H
Sbjct: 71 VAAANKGLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVS 130
Query: 114 CIKTWLRDNENCCICREEVVV 134
CI TWL + +C CR+ +VV
Sbjct: 131 CIDTWLGSHSSCPSCRQILVV 151
>sp|E9QAU8|RN165_MOUSE RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1
Length = 347
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 25/101 (24%)
Query: 57 DYEEITRLEETIGNVSRGLSERKISRL----------PS---------------HKCAIC 91
YEE+ +LE+ +GNV+RG + I R P KC IC
Sbjct: 239 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTIC 298
Query: 92 KLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
E G+ + LPC H +H C+ WL ++ C ICR ++
Sbjct: 299 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 339
>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1
Length = 313
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133
+C +CK +Y G+ + LPC H +HD CI WL +++C +CR+ +
Sbjct: 230 ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 276
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 25/101 (24%)
Query: 57 DYEEITRLEETIGNVSRGLSERKISRL----------PS---------------HKCAIC 91
YEE+ +LE+ +GNV+RG + I R P KC IC
Sbjct: 238 SYEELLQLEDRLGNVTRGAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTIC 297
Query: 92 KLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
E G+ + LPC H +H C+ WL ++ C ICR ++
Sbjct: 298 LSMLEDGEDVRRLPCMHLFHQLCVDQWLAMSKKCPICRVDI 338
>sp|Q5M974|RN181_XENTR E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis GN=rnf181
PE=2 SV=1
Length = 156
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC +C LE+E G+ + LPC H +H CI WL +C +CR E+
Sbjct: 78 KCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHEL 123
>sp|Q6GPV5|RN181_XENLA E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis GN=rnf181 PE=2
SV=1
Length = 156
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC +C LE+E G+ + LPC H +H CI WL +C +CR E+
Sbjct: 78 KCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHEL 123
>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1
Length = 313
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133
+C +CK +Y G+ + LPC H +HD CI WL +++C +CR+ +
Sbjct: 231 ECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLT 277
>sp|Q4KLR8|ZNRF3_XENLA E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis GN=znrf3 PE=2
SV=1
Length = 784
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 62 TRLEETIGNVSRGLSERKISRLPSHK---CAICKLEYERGDRLITLPCGHKYHDECIKTW 118
TR + G VSR S + L S CAIC +Y G+ L +PC H++H C+ W
Sbjct: 173 TRKFKAKGKVSREGSCGGLDTLSSSSISDCAICLEKYIDGEELRVIPCTHRFHKRCVDPW 232
Query: 119 LRDNENCCICREEVV 133
L N C CR ++
Sbjct: 233 LLQNHTCPHCRHNII 247
>sp|Q8RXD3|AIP2_ARATH E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana GN=AIP2
PE=1 SV=1
Length = 310
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
+C ICK GD++ LPC H +H C+K WL ++ +C ICR E+
Sbjct: 229 ECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 274
>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1
Length = 685
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133
C++C +Y G++L LPC H++H CI WL +N C ICR+ V+
Sbjct: 632 CSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVL 677
>sp|Q9DBU5|RNF6_MOUSE E3 ubiquitin-protein ligase RNF6 OS=Mus musculus GN=Rnf6 PE=1 SV=1
Length = 667
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 13/74 (17%)
Query: 73 RGLSERKISRLPSHK-------------CAICKLEYERGDRLITLPCGHKYHDECIKTWL 119
RGL++ +I L + C++C +Y G++L LPC H++H CI WL
Sbjct: 586 RGLTKEQIDNLSTRSYEQDGVDSELGKVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWL 645
Query: 120 RDNENCCICREEVV 133
+N C +CR V+
Sbjct: 646 SENCTCPVCRRPVL 659
>sp|Q9CY62|RN181_MOUSE E3 ubiquitin-protein ligase RNF181 OS=Mus musculus GN=Rnf181 PE=2
SV=1
Length = 165
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132
KC +C LE+E + +I +PC H +H CI WL +C +CR E+
Sbjct: 87 KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132
>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp.
japonica GN=Os04g0590900 PE=2 SV=2
Length = 383
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 88 CAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDNENCCICREEVVV 134
C++C E+ G+ L LP C H +H +CI TWL+ + NC +CR +
Sbjct: 157 CSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITF 204
>sp|Q7X843|ATL48_ARATH RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=2
SV=2
Length = 349
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 37 NPILQSIQ-PMYQDEFYP--DNMDYEEITRLEETI-GNVSRGLSERKISRLPSHKCAICK 92
NP L S P Q F+ +D I L + GNV+ L + CA+C
Sbjct: 159 NPDLFSFSSPQLQHLFFLHDSGLDQTAIDALPVFLYGNVTISLEQ-------PFDCAVCL 211
Query: 93 LEYERGDRLITLP-CGHKYHDECIKTWLRDNENCCICREEV 132
E+ D+L LP C H +H CI TWL N C +CR +
Sbjct: 212 NEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSL 252
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,087,640
Number of Sequences: 539616
Number of extensions: 2206719
Number of successful extensions: 6749
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 6293
Number of HSP's gapped (non-prelim): 626
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)