Query 045064
Match_columns 134
No_of_seqs 167 out of 1515
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 16:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045064.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045064hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.7 4.3E-17 1.5E-21 103.1 5.1 48 86-133 41-88 (91)
2 1iym_A EL5; ring-H2 finger, ub 99.6 1E-16 3.4E-21 92.0 4.1 49 86-134 6-55 (55)
3 2ep4_A Ring finger protein 24; 99.6 5.2E-16 1.8E-20 94.1 3.7 49 85-133 15-63 (74)
4 1x4j_A Ring finger protein 38; 99.6 3.5E-16 1.2E-20 95.2 2.9 48 86-133 24-71 (75)
5 2kiz_A E3 ubiquitin-protein li 99.6 1.1E-15 3.7E-20 91.5 4.5 49 85-133 14-62 (69)
6 2ect_A Ring finger protein 126 99.6 9.5E-16 3.2E-20 93.9 3.1 49 85-133 15-63 (78)
7 2ecl_A Ring-box protein 2; RNF 99.5 1.6E-15 5.3E-20 93.9 2.5 49 85-133 15-75 (81)
8 2ecm_A Ring finger and CHY zin 99.5 6.2E-15 2.1E-19 84.3 3.9 49 85-133 5-54 (55)
9 3dpl_R Ring-box protein 1; ubi 99.5 2E-14 6.9E-19 93.3 5.0 49 85-133 37-100 (106)
10 1v87_A Deltex protein 2; ring- 99.5 2E-14 7E-19 93.9 4.3 49 85-133 25-93 (114)
11 3ng2_A RNF4, snurf, ring finge 99.5 1.2E-14 4.1E-19 87.2 2.8 50 84-133 9-62 (71)
12 2d8t_A Dactylidin, ring finger 99.5 1.1E-14 3.9E-19 87.6 2.7 47 84-133 14-60 (71)
13 2ea6_A Ring finger protein 4; 99.5 1.1E-14 3.7E-19 86.8 2.3 49 85-133 15-67 (69)
14 2xeu_A Ring finger protein 4; 99.5 2.5E-14 8.4E-19 84.0 2.9 48 86-133 4-55 (64)
15 4ayc_A E3 ubiquitin-protein li 99.4 4.3E-14 1.5E-18 95.5 3.7 44 87-133 55-98 (138)
16 2djb_A Polycomb group ring fin 99.4 1.1E-13 3.9E-18 83.4 3.9 45 86-133 16-61 (72)
17 1chc_A Equine herpes virus-1 r 99.4 9.6E-14 3.3E-18 82.6 3.5 46 86-133 6-51 (68)
18 2csy_A Zinc finger protein 183 99.4 7.9E-14 2.7E-18 85.9 3.1 45 85-132 15-59 (81)
19 2d8s_A Cellular modulator of i 99.4 5.5E-14 1.9E-18 86.8 2.4 49 85-134 15-70 (80)
20 2ecn_A Ring finger protein 141 99.4 3.5E-14 1.2E-18 85.1 0.8 45 85-133 15-59 (70)
21 2ysl_A Tripartite motif-contai 99.4 2.6E-13 8.9E-18 81.7 4.3 46 85-133 20-68 (73)
22 4a0k_B E3 ubiquitin-protein li 99.4 3.6E-14 1.2E-18 93.5 0.4 48 86-133 49-111 (117)
23 2ct2_A Tripartite motif protei 99.4 3.2E-13 1.1E-17 84.0 4.4 48 86-133 16-67 (88)
24 2yur_A Retinoblastoma-binding 99.4 2.2E-13 7.4E-18 82.7 3.2 44 86-132 16-62 (74)
25 1t1h_A Gspef-atpub14, armadill 99.4 3.5E-13 1.2E-17 82.3 4.1 46 85-133 8-54 (78)
26 2ecy_A TNF receptor-associated 99.4 2.6E-13 8.9E-18 80.4 3.2 46 85-133 15-61 (66)
27 3lrq_A E3 ubiquitin-protein li 99.4 2.6E-13 8.8E-18 86.9 3.0 44 87-133 24-69 (100)
28 2y43_A E3 ubiquitin-protein li 99.3 5.1E-13 1.8E-17 85.2 3.8 44 87-133 24-68 (99)
29 2ecw_A Tripartite motif-contai 99.3 8.2E-13 2.8E-17 81.4 4.4 45 86-133 20-70 (85)
30 2ysj_A Tripartite motif-contai 99.3 1.4E-12 4.7E-17 76.5 4.7 41 85-128 20-63 (63)
31 3fl2_A E3 ubiquitin-protein li 99.3 7.6E-13 2.6E-17 87.7 3.8 44 87-133 54-98 (124)
32 2egp_A Tripartite motif-contai 99.3 1.4E-13 4.8E-18 84.1 0.2 46 85-133 12-64 (79)
33 2ckl_A Polycomb group ring fin 99.3 9E-13 3.1E-17 85.3 3.9 45 86-133 16-61 (108)
34 2ecv_A Tripartite motif-contai 99.3 9.7E-13 3.3E-17 81.1 3.1 45 86-133 20-70 (85)
35 4ap4_A E3 ubiquitin ligase RNF 99.3 1.2E-12 4E-17 87.0 3.5 49 85-133 7-59 (133)
36 3ztg_A E3 ubiquitin-protein li 99.3 1.6E-12 5.4E-17 81.7 3.6 45 85-132 13-60 (92)
37 2ecj_A Tripartite motif-contai 99.3 2.2E-12 7.7E-17 74.1 3.4 41 85-128 15-58 (58)
38 2ct0_A Non-SMC element 1 homol 99.3 2E-12 7E-17 78.5 3.3 46 86-133 16-63 (74)
39 2ckl_B Ubiquitin ligase protei 99.3 2.5E-12 8.7E-17 89.0 4.0 43 87-132 56-100 (165)
40 1g25_A CDK-activating kinase a 99.3 3.9E-12 1.3E-16 75.0 4.0 48 86-133 4-54 (65)
41 1jm7_A BRCA1, breast cancer ty 99.3 2.3E-12 7.7E-17 83.6 3.1 44 87-133 23-69 (112)
42 1z6u_A NP95-like ring finger p 99.3 3.2E-12 1.1E-16 87.6 3.8 45 86-133 79-124 (150)
43 3l11_A E3 ubiquitin-protein li 99.2 1.8E-12 6E-17 84.8 1.6 43 87-132 17-60 (115)
44 2kr4_A Ubiquitin conjugation f 99.2 4.7E-12 1.6E-16 78.8 3.1 46 85-133 14-59 (85)
45 1rmd_A RAG1; V(D)J recombinati 99.2 6.5E-12 2.2E-16 82.2 3.2 44 87-133 25-69 (116)
46 2kre_A Ubiquitin conjugation f 99.2 1.2E-11 4.1E-16 79.3 4.1 46 85-133 29-74 (100)
47 3hct_A TNF receptor-associated 99.2 5.7E-12 2E-16 82.8 2.5 44 87-133 20-64 (118)
48 4ap4_A E3 ubiquitin ligase RNF 99.2 9.6E-12 3.3E-16 82.5 3.5 49 85-133 72-124 (133)
49 1wgm_A Ubiquitin conjugation f 99.2 2.5E-11 8.4E-16 77.5 4.2 46 85-133 22-68 (98)
50 2vje_A E3 ubiquitin-protein li 99.1 2E-11 6.8E-16 72.1 2.8 45 86-133 9-56 (64)
51 3knv_A TNF receptor-associated 99.1 1.3E-11 4.4E-16 83.8 1.2 44 86-132 32-76 (141)
52 2y1n_A E3 ubiquitin-protein li 99.1 4.5E-11 1.6E-15 92.7 4.1 45 86-133 333-378 (389)
53 1jm7_B BARD1, BRCA1-associated 99.1 1.7E-11 5.7E-16 80.4 1.3 43 86-133 23-66 (117)
54 2vje_B MDM4 protein; proto-onc 99.1 5.6E-11 1.9E-15 69.9 3.1 45 86-133 8-55 (63)
55 1bor_A Transcription factor PM 99.1 1.8E-11 6.2E-16 70.3 0.6 43 85-133 6-48 (56)
56 1e4u_A Transcriptional repress 99.1 8.7E-11 3E-15 72.0 3.7 48 85-132 11-60 (78)
57 4ic3_A E3 ubiquitin-protein li 99.0 5.3E-11 1.8E-15 72.1 2.1 40 87-133 26-66 (74)
58 2c2l_A CHIP, carboxy terminus 99.0 1.7E-10 5.7E-15 85.2 3.2 46 85-133 208-254 (281)
59 2yu4_A E3 SUMO-protein ligase 99.0 2.7E-10 9.2E-15 72.0 2.7 44 85-131 7-59 (94)
60 3hcs_A TNF receptor-associated 98.9 2.6E-10 8.9E-15 79.1 2.5 45 86-133 19-64 (170)
61 3k1l_B Fancl; UBC, ring, RWD, 98.9 1.9E-10 6.4E-15 87.7 0.2 50 84-133 307-372 (381)
62 2ecg_A Baculoviral IAP repeat- 98.9 5.7E-10 2E-14 67.6 2.1 40 87-133 27-67 (75)
63 2f42_A STIP1 homology and U-bo 98.9 1.1E-09 3.7E-14 76.9 3.3 45 86-133 107-152 (179)
64 2yho_A E3 ubiquitin-protein li 98.8 1.2E-09 4.2E-14 66.9 1.8 40 87-133 20-60 (79)
65 2ea5_A Cell growth regulator w 98.8 2.3E-09 7.8E-14 63.9 2.5 42 85-133 15-57 (68)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.8 2.8E-09 9.5E-14 62.0 2.5 46 86-134 7-59 (60)
67 1wim_A KIAA0161 protein; ring 98.7 4.3E-09 1.5E-13 66.2 2.9 47 85-131 5-61 (94)
68 3htk_C E3 SUMO-protein ligase 98.7 5.5E-09 1.9E-13 77.1 3.2 45 86-133 182-231 (267)
69 2bay_A PRE-mRNA splicing facto 98.7 7.7E-09 2.6E-13 60.3 2.3 45 86-133 4-49 (61)
70 3t6p_A Baculoviral IAP repeat- 98.6 6.5E-09 2.2E-13 79.8 1.2 41 86-133 296-337 (345)
71 3vk6_A E3 ubiquitin-protein li 98.4 1.8E-07 6.2E-12 59.2 3.9 45 87-133 3-48 (101)
72 3nw0_A Non-structural maintena 98.3 8.1E-07 2.8E-11 64.9 4.4 46 85-133 180-228 (238)
73 2ko5_A Ring finger protein Z; 96.8 0.001 3.4E-08 41.4 3.0 46 84-133 27-72 (99)
74 2lri_C Autoimmune regulator; Z 96.2 0.0033 1.1E-07 36.7 2.6 45 83-131 10-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 95.8 0.0092 3.1E-07 37.2 3.6 33 86-118 4-36 (101)
76 1wil_A KIAA1045 protein; ring 94.9 0.024 8.4E-07 34.5 3.2 29 86-118 16-47 (89)
77 3lqh_A Histone-lysine N-methyl 92.5 0.043 1.5E-06 38.2 1.4 45 87-131 4-63 (183)
78 1f62_A Transcription factor WS 92.5 0.064 2.2E-06 29.2 1.9 43 88-130 3-49 (51)
79 3m62_A Ubiquitin conjugation f 91.9 0.098 3.3E-06 44.9 3.1 44 87-133 893-937 (968)
80 1we9_A PHD finger family prote 90.9 0.028 9.4E-07 32.2 -0.9 45 86-130 7-57 (64)
81 2k16_A Transcription initiatio 90.7 0.056 1.9E-06 31.9 0.4 44 87-131 20-68 (75)
82 3v43_A Histone acetyltransfera 90.1 0.49 1.7E-05 30.0 4.5 33 84-116 4-42 (112)
83 2l5u_A Chromodomain-helicase-D 88.5 0.2 7E-06 28.3 1.6 43 85-131 11-58 (61)
84 2vpb_A Hpygo1, pygopus homolog 88.5 0.41 1.4E-05 27.5 2.9 33 84-116 7-41 (65)
85 2kgg_A Histone demethylase jar 88.3 0.33 1.1E-05 26.5 2.3 43 87-129 4-52 (52)
86 2xb1_A Pygopus homolog 2, B-ce 88.1 0.27 9.4E-06 31.0 2.2 47 84-130 2-60 (105)
87 2lv9_A Histone-lysine N-methyl 87.4 0.14 4.8E-06 31.9 0.5 44 86-130 29-75 (98)
88 1wep_A PHF8; structural genomi 86.2 0.39 1.3E-05 28.5 2.0 43 88-131 15-63 (79)
89 3v43_A Histone acetyltransfera 84.3 0.3 1E-05 31.0 0.9 43 88-130 64-111 (112)
90 3i2d_A E3 SUMO-protein ligase 83.6 0.81 2.8E-05 35.2 3.1 44 88-133 252-299 (371)
91 3u5n_A E3 ubiquitin-protein li 83.1 0.2 6.7E-06 35.3 -0.4 41 86-130 8-53 (207)
92 4fo9_A E3 SUMO-protein ligase 82.9 0.9 3.1E-05 34.8 3.1 44 88-133 218-265 (360)
93 2ri7_A Nucleosome-remodeling f 82.7 0.45 1.5E-05 32.3 1.3 43 87-130 10-58 (174)
94 3o36_A Transcription intermedi 82.4 0.22 7.6E-06 34.3 -0.3 41 86-130 5-50 (184)
95 2cs3_A Protein C14ORF4, MY039 82.4 0.84 2.9E-05 27.5 2.2 37 84-121 14-52 (93)
96 2e6s_A E3 ubiquitin-protein li 81.3 0.28 9.5E-06 29.2 -0.2 42 88-130 29-76 (77)
97 2ysm_A Myeloid/lymphoid or mix 81.2 0.42 1.4E-05 30.1 0.7 44 85-128 7-54 (111)
98 1mm2_A MI2-beta; PHD, zinc fin 79.9 0.2 7E-06 28.3 -1.0 43 86-131 10-56 (61)
99 3asl_A E3 ubiquitin-protein li 79.9 0.28 9.6E-06 28.6 -0.5 43 88-131 21-69 (70)
100 1z60_A TFIIH basal transcripti 79.4 0.67 2.3E-05 26.2 1.1 41 87-128 17-58 (59)
101 3shb_A E3 ubiquitin-protein li 79.4 0.21 7.2E-06 29.8 -1.1 27 105-131 46-77 (77)
102 1wem_A Death associated transc 78.7 0.39 1.3E-05 28.2 -0.1 42 87-130 18-69 (76)
103 2lbm_A Transcriptional regulat 76.6 2.6 9E-05 28.0 3.5 40 87-130 65-116 (142)
104 1g47_A Pinch protein; LIM doma 76.3 1.8 6.2E-05 24.8 2.4 30 84-114 10-39 (77)
105 1xwh_A Autoimmune regulator; P 75.8 0.24 8.3E-06 28.4 -1.6 42 84-129 7-53 (66)
106 3ask_A E3 ubiquitin-protein li 75.6 0.58 2E-05 33.6 0.0 44 87-131 176-225 (226)
107 1fp0_A KAP-1 corepressor; PHD 75.4 0.67 2.3E-05 28.3 0.3 40 87-130 27-71 (88)
108 2e6r_A Jumonji/ARID domain-con 74.8 0.24 8.2E-06 30.5 -1.9 45 85-130 16-65 (92)
109 2yql_A PHD finger protein 21A; 74.8 0.17 5.7E-06 28.1 -2.4 42 86-130 10-55 (56)
110 3o70_A PHD finger protein 13; 73.5 0.4 1.4E-05 27.8 -1.0 44 85-130 19-66 (68)
111 2kwj_A Zinc finger protein DPF 72.8 2.3 7.7E-05 26.9 2.4 32 87-118 3-41 (114)
112 2puy_A PHD finger protein 21A; 72.5 0.42 1.4E-05 26.8 -1.1 42 86-130 6-51 (60)
113 1wev_A Riken cDNA 1110020M19; 71.4 0.52 1.8E-05 28.7 -0.9 45 86-130 17-71 (88)
114 1vfy_A Phosphatidylinositol-3- 70.4 3.3 0.00011 24.0 2.5 32 86-117 12-44 (73)
115 2l43_A N-teminal domain from h 70.3 1.3 4.5E-05 26.8 0.8 46 85-130 25-74 (88)
116 2ro1_A Transcription intermedi 70.3 0.65 2.2E-05 32.2 -0.7 41 87-130 4-48 (189)
117 1y02_A CARP2, FYVE-ring finger 68.9 0.53 1.8E-05 30.4 -1.3 42 87-128 21-63 (120)
118 1wen_A Inhibitor of growth fam 67.8 1.5 5E-05 25.6 0.6 40 87-131 18-65 (71)
119 2o35_A Hypothetical protein DU 67.4 2.4 8.1E-05 26.5 1.5 12 109-120 42-53 (105)
120 3fyb_A Protein of unknown func 67.3 2.4 8.2E-05 26.4 1.5 12 109-120 41-52 (104)
121 2dj7_A Actin-binding LIM prote 67.1 3.1 0.00011 24.3 2.0 37 86-132 16-52 (80)
122 1joc_A EEA1, early endosomal a 66.5 3.2 0.00011 26.8 2.1 32 87-118 71-103 (125)
123 3ql9_A Transcriptional regulat 66.0 8.7 0.0003 25.0 4.1 40 87-130 59-110 (129)
124 2yt5_A Metal-response element- 64.7 3.4 0.00012 23.2 1.7 46 85-130 6-60 (66)
125 1dvp_A HRS, hepatocyte growth 64.6 3.2 0.00011 29.2 1.9 34 85-118 161-195 (220)
126 1weu_A Inhibitor of growth fam 63.9 2 6.8E-05 26.3 0.6 41 87-131 38-85 (91)
127 2gmg_A Hypothetical protein PF 63.7 1.3 4.5E-05 27.9 -0.2 23 105-132 72-94 (105)
128 3zyq_A Hepatocyte growth facto 63.6 3.5 0.00012 29.2 2.0 34 85-118 164-198 (226)
129 2dar_A PDZ and LIM domain prot 63.1 6.6 0.00023 23.2 3.0 25 87-114 27-51 (90)
130 1weo_A Cellulose synthase, cat 62.4 10 0.00036 23.1 3.6 49 84-132 15-68 (93)
131 1x62_A C-terminal LIM domain p 62.4 3.8 0.00013 23.6 1.7 37 85-132 15-51 (79)
132 2d8v_A Zinc finger FYVE domain 62.3 3.6 0.00012 23.7 1.5 28 88-119 11-39 (67)
133 2cu8_A Cysteine-rich protein 2 62.2 5.9 0.0002 22.5 2.5 37 86-132 10-46 (76)
134 1x61_A Thyroid receptor intera 61.9 8 0.00027 21.6 3.1 14 107-120 53-66 (72)
135 1nyp_A Pinch protein; LIM doma 61.8 5 0.00017 22.1 2.1 26 86-114 6-31 (66)
136 2d8z_A Four and A half LIM dom 61.1 7.8 0.00027 21.5 2.9 10 87-96 7-16 (70)
137 2ku3_A Bromodomain-containing 60.3 9.5 0.00033 22.0 3.2 46 85-130 16-65 (71)
138 1iml_A CRIP, cysteine rich int 60.2 3.3 0.00011 23.6 1.2 42 86-131 28-70 (76)
139 3f6q_B LIM and senescent cell 60.1 8.4 0.00029 21.3 2.9 40 84-132 10-49 (72)
140 1x4k_A Skeletal muscle LIM-pro 59.6 8.8 0.0003 21.4 3.0 27 87-114 7-33 (72)
141 1wyh_A SLIM 2, skeletal muscle 59.6 6.9 0.00024 21.8 2.5 10 87-96 7-16 (72)
142 3t7l_A Zinc finger FYVE domain 59.3 5.4 0.00019 24.1 2.1 33 87-119 22-55 (90)
143 1z2q_A LM5-1; membrane protein 58.3 6.9 0.00023 23.2 2.4 32 87-118 23-55 (84)
144 2cur_A Skeletal muscle LIM-pro 57.7 6.3 0.00022 21.9 2.1 10 87-96 7-16 (69)
145 1x4l_A Skeletal muscle LIM-pro 57.5 11 0.00036 21.1 3.1 28 86-114 6-35 (72)
146 2yw8_A RUN and FYVE domain-con 56.6 6.8 0.00023 23.1 2.1 32 87-118 21-53 (82)
147 3mpx_A FYVE, rhogef and PH dom 54.6 2.6 8.9E-05 32.3 0.0 46 86-131 376-429 (434)
148 1x68_A FHL5 protein; four-and- 54.5 13 0.00046 21.0 3.2 28 86-114 6-35 (76)
149 1wfk_A Zinc finger, FYVE domai 53.9 7.7 0.00026 23.3 2.1 32 86-117 10-42 (88)
150 3mjh_B Early endosome antigen 53.6 4.1 0.00014 20.2 0.6 8 124-131 7-14 (34)
151 2co8_A NEDD9 interacting prote 53.0 6.7 0.00023 22.8 1.7 37 86-132 16-52 (82)
152 1x4u_A Zinc finger, FYVE domai 52.1 8.1 0.00028 22.9 1.9 31 87-117 16-47 (84)
153 1wee_A PHD finger family prote 51.9 4.9 0.00017 23.1 0.9 43 87-130 18-65 (72)
154 2xjy_A Rhombotin-2; oncoprotei 51.5 16 0.00056 22.9 3.5 45 88-132 32-76 (131)
155 1zbd_B Rabphilin-3A; G protein 51.1 4.8 0.00016 26.3 0.9 34 84-117 54-89 (134)
156 1wig_A KIAA1808 protein; LIM d 51.0 9.8 0.00034 21.5 2.2 12 107-118 52-63 (73)
157 2jvx_A NF-kappa-B essential mo 50.3 5 0.00017 19.0 0.6 9 124-132 5-13 (28)
158 1wew_A DNA-binding family prot 49.5 13 0.00043 21.7 2.5 44 86-130 17-71 (78)
159 2d8x_A Protein pinch; LIM doma 49.3 11 0.00036 21.0 2.1 10 87-96 7-16 (70)
160 2cor_A Pinch protein; LIM doma 49.3 10 0.00034 21.8 2.0 26 86-114 16-41 (79)
161 2d8y_A Eplin protein; LIM doma 49.2 9.7 0.00033 22.5 2.0 26 87-114 17-42 (91)
162 1x63_A Skeletal muscle LIM-pro 47.2 14 0.00047 21.2 2.4 27 87-114 17-43 (82)
163 1x64_A Alpha-actinin-2 associa 47.1 11 0.00037 22.1 2.0 25 87-114 27-51 (89)
164 1m3v_A FLIN4, fusion of the LI 46.8 18 0.00062 22.6 3.1 46 88-133 35-80 (122)
165 1v6g_A Actin binding LIM prote 45.6 16 0.00053 20.9 2.5 26 86-114 16-41 (81)
166 2l4z_A DNA endonuclease RBBP8, 44.5 15 0.00052 23.2 2.5 39 84-132 60-98 (123)
167 2l3k_A Rhombotin-2, linker, LI 44.4 11 0.00039 23.6 1.9 31 88-119 39-69 (123)
168 2jne_A Hypothetical protein YF 42.4 6.5 0.00022 24.4 0.4 40 86-133 33-72 (101)
169 3c6w_A P28ING5, inhibitor of g 41.2 2.9 0.0001 23.3 -1.2 38 88-130 12-57 (59)
170 3vhs_A ATPase wrnip1; zinc fin 40.8 8.8 0.0003 17.7 0.6 9 124-132 8-16 (29)
171 2egq_A FHL1 protein; LIM domai 40.7 23 0.00079 19.8 2.7 38 86-132 16-56 (77)
172 2dlo_A Thyroid receptor-intera 39.7 14 0.00047 21.1 1.6 10 87-96 17-26 (81)
173 2vnf_A ING 4, P29ING4, inhibit 39.5 3.2 0.00011 23.2 -1.3 38 88-130 13-58 (60)
174 2cuq_A Four and A half LIM dom 39.5 17 0.00058 20.6 2.0 10 87-96 17-26 (80)
175 1x3h_A Leupaxin; paxillin fami 39.5 18 0.00063 20.4 2.1 25 87-114 17-41 (80)
176 2a20_A Regulating synaptic mem 39.4 1.5 5.2E-05 24.7 -2.5 45 86-130 10-59 (62)
177 4gne_A Histone-lysine N-methyl 38.9 16 0.00056 22.8 1.9 40 84-129 14-60 (107)
178 1a7i_A QCRP2 (LIM1); LIM domai 38.9 11 0.00037 21.6 1.0 26 87-114 9-34 (81)
179 2lq6_A Bromodomain-containing 38.8 11 0.00038 22.6 1.1 33 85-118 17-51 (87)
180 1x6a_A LIMK-2, LIM domain kina 38.8 14 0.00046 21.2 1.5 12 107-118 63-74 (81)
181 3kqi_A GRC5, PHD finger protei 38.7 19 0.00065 20.7 2.1 42 89-130 13-60 (75)
182 3a1b_A DNA (cytosine-5)-methyl 38.0 39 0.0013 22.7 3.8 29 88-120 82-113 (159)
183 4ayb_P DNA-directed RNA polyme 37.5 6.6 0.00023 21.0 -0.1 21 74-94 12-32 (48)
184 3mkr_B Coatomer subunit alpha; 37.3 24 0.00082 26.5 2.9 36 88-129 265-301 (320)
185 2cup_A Skeletal muscle LIM-pro 37.3 30 0.001 20.5 2.9 43 87-133 35-77 (101)
186 2fiy_A Protein FDHE homolog; F 36.6 3.3 0.00011 31.0 -1.9 46 83-130 180-230 (309)
187 2zet_C Melanophilin; complex, 36.4 16 0.00053 24.4 1.6 46 84-130 67-116 (153)
188 1l8d_A DNA double-strand break 36.4 10 0.00034 23.5 0.6 6 125-130 50-55 (112)
189 2g6q_A Inhibitor of growth pro 35.5 4.1 0.00014 22.9 -1.2 38 88-130 14-59 (62)
190 2pv0_B DNA (cytosine-5)-methyl 34.3 35 0.0012 26.3 3.4 25 105-129 112-146 (386)
191 3pwf_A Rubrerythrin; non heme 34.0 21 0.00073 24.0 2.0 20 105-131 143-162 (170)
192 1rut_X Flinc4, fusion protein 33.7 21 0.00073 24.1 2.0 26 107-132 54-79 (188)
193 2ehe_A Four and A half LIM dom 33.6 26 0.00089 19.9 2.2 27 87-114 17-43 (82)
194 3mv2_A Coatomer subunit alpha; 33.4 26 0.00087 26.4 2.5 36 88-129 274-310 (325)
195 2kpi_A Uncharacterized protein 33.1 19 0.00064 19.7 1.3 25 86-110 11-38 (56)
196 2ct7_A Ring finger protein 31; 31.5 3.1 0.00011 24.9 -2.3 31 88-118 28-61 (86)
197 2jmo_A Parkin; IBR, E3 ligase, 30.2 3.3 0.00011 24.5 -2.4 20 105-126 55-74 (80)
198 2das_A Zinc finger MYM-type pr 29.6 52 0.0018 18.4 2.7 34 86-119 21-56 (62)
199 2lcq_A Putative toxin VAPC6; P 29.4 14 0.00049 24.4 0.5 21 106-132 138-158 (165)
200 2jrp_A Putative cytoplasmic pr 28.7 19 0.00064 21.5 0.9 12 87-98 4-15 (81)
201 1r79_A Diacylglycerol kinase, 28.4 36 0.0012 20.2 2.2 39 86-127 39-80 (84)
202 1zfo_A LAsp-1; LIM domain, zin 28.2 25 0.00086 16.5 1.2 11 122-132 3-13 (31)
203 1loi_A Cyclic 3',5'-AMP specif 27.3 2.6 8.8E-05 19.0 -2.4 12 109-120 6-17 (26)
204 2xqn_T Testin, TESS; metal-bin 27.0 1E+02 0.0034 18.9 4.3 43 87-133 32-74 (126)
205 1wd2_A Ariadne-1 protein homol 26.9 8.9 0.00031 21.3 -0.8 36 86-121 7-47 (60)
206 2iyb_E Testin, TESS, TES; LIM 26.6 34 0.0011 18.6 1.7 27 87-114 4-32 (65)
207 2kdx_A HYPA, hydrogenase/ureas 24.9 33 0.0011 21.5 1.6 21 105-131 78-99 (119)
208 3kv5_D JMJC domain-containing 24.6 39 0.0013 26.8 2.3 41 88-129 40-86 (488)
209 1j2o_A FLIN2, fusion of rhombo 23.5 69 0.0024 19.5 2.9 33 87-120 32-65 (114)
210 1b8t_A Protein (CRP1); LIM dom 21.8 41 0.0014 22.6 1.7 22 106-129 161-182 (192)
211 3o7a_A PHD finger protein 13 v 21.5 26 0.00088 18.5 0.5 40 90-130 8-51 (52)
212 1lko_A Rubrerythrin all-iron(I 20.5 30 0.001 23.6 0.8 9 123-131 172-180 (191)
213 1yuz_A Nigerythrin; rubrythrin 20.1 35 0.0012 23.6 1.1 9 123-131 187-195 (202)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-17 Score=103.05 Aligned_cols=48 Identities=38% Similarity=0.906 Sum_probs=44.3
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.|..++.++.+||+|.||..||..|+..+.+||+||..+.
T Consensus 41 ~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 41 MCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFP 88 (91)
T ss_dssp SEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSS
T ss_pred CCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCC
Confidence 349999999998888889999999999999999999999999999874
No 2
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.65 E-value=1e-16 Score=91.95 Aligned_cols=49 Identities=45% Similarity=1.040 Sum_probs=45.3
Q ss_pred CcccccCccccCCCceEEec-CCccccHHHHHHHhhCCCCcccCCCcccC
Q 045064 86 HKCAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDNENCCICREEVVV 134 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~~ 134 (134)
..|+||++.|..++.+..++ |+|.||..|+.+|++.+.+||+||++++|
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~v 55 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeEC
Confidence 45999999999888888898 99999999999999999999999999875
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=5.2e-16 Score=94.12 Aligned_cols=49 Identities=31% Similarity=0.815 Sum_probs=44.6
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+..+..+||+|.||..||.+|++.+.+||+||+++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp SCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 4469999999998888888999999999999999999899999998764
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-16 Score=95.23 Aligned_cols=48 Identities=35% Similarity=0.982 Sum_probs=44.5
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.|..++.++.+||+|.||..||.+|++.+.+||+||+++.
T Consensus 24 ~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~ 71 (75)
T 1x4j_A 24 TLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71 (75)
T ss_dssp CEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCC
Confidence 459999999999888899999999999999999999999999999874
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-15 Score=91.54 Aligned_cols=49 Identities=39% Similarity=0.935 Sum_probs=44.4
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+..++.+||+|.||..||.+|+..+.+||+||..+.
T Consensus 14 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (69)
T 2kiz_A 14 EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE 62 (69)
T ss_dssp CCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred CCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence 3459999999988778888999999999999999999999999998874
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.57 E-value=9.5e-16 Score=93.87 Aligned_cols=49 Identities=37% Similarity=1.059 Sum_probs=44.5
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+..+..++|+|.||..||.+|+..+.+||+||..+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 63 (78)
T 2ect_A 15 GLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLT 63 (78)
T ss_dssp SCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCC
T ss_pred CCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccC
Confidence 3469999999998888888999999999999999999999999998764
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.6e-15 Score=93.92 Aligned_cols=49 Identities=29% Similarity=0.899 Sum_probs=40.0
Q ss_pred CCcccccCccccC-----------CCceEEec-CCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYER-----------GDRLITLP-CGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~-----------~~~~~~lp-C~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|.. ++.++.++ |+|.||..||.+|+..+.+||+||+++.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence 3458888888754 34456665 9999999999999999999999999875
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.53 E-value=6.2e-15 Score=84.30 Aligned_cols=49 Identities=29% Similarity=0.659 Sum_probs=42.1
Q ss_pred CCcccccCccccCCC-ceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGD-RLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~-~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.+.... .++.++|+|.||..|+.+|+..+.+||+||+++.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 456999999996543 4677889999999999999998899999999874
No 9
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.50 E-value=2e-14 Score=93.26 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=41.3
Q ss_pred CCcccccCccccCCC---------------ceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGD---------------RLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~---------------~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+- .++.++|+|.||..||.+||..+.+||+||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 345999999998541 2566789999999999999999999999999853
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.48 E-value=2e-14 Score=93.85 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=39.5
Q ss_pred CCcccccCccccCCC---------------ceEEecCCccccHHHHHHHh-----hCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGD---------------RLITLPCGHKYHDECIKTWL-----RDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~---------------~~~~lpC~H~fh~~Ci~~wl-----~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+. .+..++|+|.||..||..|+ ..+.+||+||..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 346999999997643 33467899999999999999 45678999998763
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.48 E-value=1.2e-14 Score=87.16 Aligned_cols=50 Identities=24% Similarity=0.703 Sum_probs=42.6
Q ss_pred CCCcccccCccccCC----CceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 84 PSHKCAICKLEYERG----DRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
....|+||++.+..+ ...+.++|||.||..|+.+|+..+.+||+||.++.
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 62 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 62 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccC
Confidence 345699999998764 45577899999999999999999999999998764
No 12
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-14 Score=87.60 Aligned_cols=47 Identities=30% Similarity=0.677 Sum_probs=41.4
Q ss_pred CCCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 84 PSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
....|+||++.+..+ +.++|+|.||..||..|+..+..||+||..+.
T Consensus 14 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 14 TVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP 60 (71)
T ss_dssp SCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred CCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence 345699999998766 77899999999999999999999999998763
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-14 Score=86.78 Aligned_cols=49 Identities=24% Similarity=0.728 Sum_probs=41.9
Q ss_pred CCcccccCccccCC----CceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERG----DRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+ ..++.++|+|.||..||..|+..+..||+||.++.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 44699999999764 34477899999999999999999999999999874
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.46 E-value=2.5e-14 Score=84.00 Aligned_cols=48 Identities=25% Similarity=0.733 Sum_probs=41.5
Q ss_pred CcccccCccccCC----CceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERG----DRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.+..+ ..+..++|||.||..|+.+|+..+..||+||.++.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 55 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCC
Confidence 4699999998754 34577899999999999999999999999998764
No 15
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.44 E-value=4.3e-14 Score=95.50 Aligned_cols=44 Identities=32% Similarity=0.927 Sum_probs=40.2
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
.|+||++.|..+ +.+||||.||..||..|+..+.+||+||.++.
T Consensus 55 ~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp BCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred CCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 599999999876 78899999999999999999999999998763
No 16
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=83.38 Aligned_cols=45 Identities=27% Similarity=0.493 Sum_probs=39.8
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.+..+ +.+ +|+|.||..||..|+..+..||+||..+.
T Consensus 16 ~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (72)
T 2djb_A 16 ILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH 61 (72)
T ss_dssp GSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence 3599999999876 665 89999999999999998899999998764
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.42 E-value=9.6e-14 Score=82.61 Aligned_cols=46 Identities=33% Similarity=0.813 Sum_probs=39.9
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.+..+ .+.+||+|.||..|+.+|+..+.+||+||.++.
T Consensus 6 ~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 6 ERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 3599999998753 467899999999999999999999999998763
No 18
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=7.9e-14 Score=85.89 Aligned_cols=45 Identities=22% Similarity=0.729 Sum_probs=40.2
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
...|+||++.|..+ +.++|+|.||..||..|+.....||+||..+
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 34699999999776 6789999999999999999889999999875
No 19
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.5e-14 Score=86.80 Aligned_cols=49 Identities=29% Similarity=0.815 Sum_probs=40.6
Q ss_pred CCcccccCccccCCCceEEecCC-----ccccHHHHHHHhhCC--CCcccCCCcccC
Q 045064 85 SHKCAICKLEYERGDRLITLPCG-----HKYHDECIKTWLRDN--ENCCICREEVVV 134 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~-----H~fh~~Ci~~wl~~~--~~CP~Cr~~v~~ 134 (134)
...|.||++.|..++.+ .+||+ |.||..||.+|+..+ .+||+||+++.+
T Consensus 15 ~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 15 QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp SCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34599999999876655 58996 999999999999865 489999998753
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.5e-14 Score=85.09 Aligned_cols=45 Identities=33% Similarity=0.895 Sum_probs=39.6
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.+.. +.+||+|.||..|+.+|+..+..||+||.++.
T Consensus 15 ~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (70)
T 2ecn_A 15 EEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59 (70)
T ss_dssp CCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred CCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence 3469999999875 67899999999999999999999999997763
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=81.72 Aligned_cols=46 Identities=26% Similarity=0.592 Sum_probs=39.2
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhh---CCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLR---DNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~---~~~~CP~Cr~~v~ 133 (134)
...|+||++.+..+ +.++|||.||..|+..|+. ....||+||.++.
T Consensus 20 ~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 20 EVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred CCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34599999998865 7789999999999999997 4558999998874
No 22
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.39 E-value=3.6e-14 Score=93.50 Aligned_cols=48 Identities=27% Similarity=0.594 Sum_probs=0.0
Q ss_pred CcccccCccccCC-------------C--ceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERG-------------D--RLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~-------------~--~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.|..+ + .++.++|+|.||..||.+||..+.+||+||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 3599999999753 1 2233579999999999999999999999998854
No 23
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=84.05 Aligned_cols=48 Identities=23% Similarity=0.570 Sum_probs=40.9
Q ss_pred CcccccCccccCCCc-eEEecCCccccHHHHHHHhhCC---CCcccCCCccc
Q 045064 86 HKCAICKLEYERGDR-LITLPCGHKYHDECIKTWLRDN---ENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~-~~~lpC~H~fh~~Ci~~wl~~~---~~CP~Cr~~v~ 133 (134)
..|+||++.|...+. .+.++|||.||..|+..|+..+ ..||+||..+.
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 459999999987543 5778999999999999999875 68999998764
No 24
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.38 E-value=2.2e-13 Score=82.66 Aligned_cols=44 Identities=36% Similarity=0.825 Sum_probs=38.9
Q ss_pred CcccccCccccCCCceEEec-CCccccHHHHHHHhhCC--CCcccCCCcc
Q 045064 86 HKCAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDN--ENCCICREEV 132 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v 132 (134)
..|+||++.|..+ +.++ |+|.||..||..|+..+ ..||+||.++
T Consensus 16 ~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 62 (74)
T 2yur_A 16 LLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62 (74)
T ss_dssp GSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSS
T ss_pred CCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcC
Confidence 3599999999877 7799 99999999999999865 6899999875
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.37 E-value=3.5e-13 Score=82.30 Aligned_cols=46 Identities=20% Similarity=0.504 Sum_probs=40.5
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhC-CCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD-NENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~ 133 (134)
...|+||++.|.++ +.++|||.||..||..|+.. +.+||+||.++.
T Consensus 8 ~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 34699999999877 77899999999999999987 778999998763
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2.6e-13 Score=80.42 Aligned_cols=46 Identities=28% Similarity=0.739 Sum_probs=39.3
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhh-CCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLR-DNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~ 133 (134)
...|+||++.+..+ +.++|||.||..|+.+|+. .+..||+||.++.
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred CCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 34599999999877 5579999999999999994 5678999998764
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.36 E-value=2.6e-13 Score=86.94 Aligned_cols=44 Identities=25% Similarity=0.640 Sum_probs=39.1
Q ss_pred cccccCccccCCCceEE-ecCCccccHHHHHHHhhCC-CCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLIT-LPCGHKYHDECIKTWLRDN-ENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~-lpC~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~ 133 (134)
.|+||++.|..+ +. ++|||.||..||..|+... ..||+||.++.
T Consensus 24 ~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 24 RCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp BCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 599999999866 66 8899999999999999877 69999998763
No 28
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.35 E-value=5.1e-13 Score=85.17 Aligned_cols=44 Identities=27% Similarity=0.725 Sum_probs=39.3
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
.|+||++.|..+ +.+ +|||.||..|+..|+..+..||+||..+.
T Consensus 24 ~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 68 (99)
T 2y43_A 24 RCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68 (99)
T ss_dssp BCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence 599999999875 666 89999999999999998899999998764
No 29
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.34 E-value=8.2e-13 Score=81.42 Aligned_cols=45 Identities=24% Similarity=0.591 Sum_probs=39.6
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhC------CCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD------NENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~ 133 (134)
..|+||++.+..+ +.++|+|.||..|+..|+.. ...||+||..+.
T Consensus 20 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 20 VTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3599999999877 67899999999999999987 668999998764
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.4e-12 Score=76.50 Aligned_cols=41 Identities=27% Similarity=0.630 Sum_probs=35.8
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhh---CCCCcccC
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLR---DNENCCIC 128 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~---~~~~CP~C 128 (134)
...|+||++.+..+ +.++|||.||..||.+|++ ....||+|
T Consensus 20 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34599999999877 7789999999999999998 45689998
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.32 E-value=7.6e-13 Score=87.68 Aligned_cols=44 Identities=27% Similarity=0.590 Sum_probs=38.8
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhhCCC-CcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNE-NCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~ 133 (134)
.|+||++.|..+ +.+||||.||..||..|+.... .||+||..+.
T Consensus 54 ~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 54 QCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLG 98 (124)
T ss_dssp BCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCC
Confidence 599999999877 7789999999999999998544 8999998763
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.32 E-value=1.4e-13 Score=84.09 Aligned_cols=46 Identities=24% Similarity=0.586 Sum_probs=39.5
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhC-------CCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD-------NENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-------~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+ +.++|||.||..|+..|+.. ...||+||..+.
T Consensus 12 ~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 12 EVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred CCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34699999999876 56799999999999999986 567999998764
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.32 E-value=9e-13 Score=85.33 Aligned_cols=45 Identities=27% Similarity=0.639 Sum_probs=39.9
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.|..+ +.+ +|||.||..||..|+..+..||+||..+.
T Consensus 16 ~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 16 LMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp TBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 4599999999875 666 99999999999999999999999998763
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.7e-13 Score=81.08 Aligned_cols=45 Identities=24% Similarity=0.677 Sum_probs=39.4
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhC------CCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD------NENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~------~~~CP~Cr~~v~ 133 (134)
..|+||++.+..+ +.++|+|.||..|+..|+.. ...||+||..+.
T Consensus 20 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 20 VTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 4599999999876 66799999999999999987 778999998764
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.30 E-value=1.2e-12 Score=86.97 Aligned_cols=49 Identities=24% Similarity=0.728 Sum_probs=42.3
Q ss_pred CCcccccCccccCC----CceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERG----DRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+ ..++.++|||.||..||.+|++.+.+||+||+.+.
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 34699999999764 45577899999999999999999999999998764
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-12 Score=81.72 Aligned_cols=45 Identities=36% Similarity=0.808 Sum_probs=39.2
Q ss_pred CCcccccCccccCCCceEEec-CCccccHHHHHHHhhCC--CCcccCCCcc
Q 045064 85 SHKCAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDN--ENCCICREEV 132 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~--~~CP~Cr~~v 132 (134)
...|+||++.|..+ +.+| |||.||..||..|+..+ ..||+||..+
T Consensus 13 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 34699999999887 7889 99999999999999743 5899999875
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.2e-12 Score=74.14 Aligned_cols=41 Identities=24% Similarity=0.833 Sum_probs=35.0
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhh---CCCCcccC
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLR---DNENCCIC 128 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~---~~~~CP~C 128 (134)
...|+||++.+..+ +.++|+|.||..||.+|+. .+..||+|
T Consensus 15 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34699999999877 6689999999999999954 56689998
No 38
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2e-12 Score=78.46 Aligned_cols=46 Identities=24% Similarity=0.597 Sum_probs=38.3
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCC--CCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDN--ENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~--~~CP~Cr~~v~ 133 (134)
..|+||.+.+..+... ..|+|.||..||.+||+++ .+||+||.++.
T Consensus 16 ~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3599999999866322 2599999999999999887 78999998764
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.27 E-value=2.5e-12 Score=89.03 Aligned_cols=43 Identities=35% Similarity=0.767 Sum_probs=38.2
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHhhC-CCCcccCCCcc
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD-NENCCICREEV 132 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~-~~~CP~Cr~~v 132 (134)
.|+||++.|..+ +.+ +|||.||..||..|+.. +..||+||..+
T Consensus 56 ~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 56 MCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp BCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999999875 555 89999999999999987 77899999876
No 40
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=3.9e-12 Score=75.02 Aligned_cols=48 Identities=23% Similarity=0.567 Sum_probs=38.6
Q ss_pred CcccccCc-cccCCCce-EEecCCccccHHHHHHHhhC-CCCcccCCCccc
Q 045064 86 HKCAICKL-EYERGDRL-ITLPCGHKYHDECIKTWLRD-NENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~-~~~~~~~~-~~lpC~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~ 133 (134)
..|+||++ .+..+... +.++|||.||..|+.+|+.. ...||+||..+.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 46999999 77766533 45789999999999999765 467999998763
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=2.3e-12 Score=83.60 Aligned_cols=44 Identities=20% Similarity=0.682 Sum_probs=38.3
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhhCCC---CcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNE---NCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~---~CP~Cr~~v~ 133 (134)
.|+||++.+..+ +.++|||.||..|+..|+..+. .||+||..+.
T Consensus 23 ~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 23 ECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp SCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 599999999877 5679999999999999998654 8999998764
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.25 E-value=3.2e-12 Score=87.56 Aligned_cols=45 Identities=20% Similarity=0.534 Sum_probs=39.6
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCCC-CcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNE-NCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~ 133 (134)
..|+||++.|..+ +.+||||.||..||..|+.... .||+||..+.
T Consensus 79 ~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 124 (150)
T 1z6u_A 79 FMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLG 124 (150)
T ss_dssp TBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCC
Confidence 4599999999877 7789999999999999998755 8999998764
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.23 E-value=1.8e-12 Score=84.78 Aligned_cols=43 Identities=30% Similarity=0.726 Sum_probs=38.7
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhhC-CCCcccCCCcc
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD-NENCCICREEV 132 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~~CP~Cr~~v 132 (134)
.|+||++.+..+ +.++|||.||..||..|+.. ...||+||..+
T Consensus 17 ~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 17 QCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp BCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 499999999877 78899999999999999976 66899999876
No 44
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.22 E-value=4.7e-12 Score=78.82 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=41.7
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|.++ +.++|||.|+..||..|+..+.+||+|+.++.
T Consensus 14 ~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 14 EFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp TTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred heECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence 45699999999988 88999999999999999998889999998763
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.20 E-value=6.5e-12 Score=82.16 Aligned_cols=44 Identities=25% Similarity=0.559 Sum_probs=39.1
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhhC-CCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD-NENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~-~~~CP~Cr~~v~ 133 (134)
.|+||++.+..+ +.++|||.||..||..|+.. ...||+||.++.
T Consensus 25 ~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 25 SCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69 (116)
T ss_dssp BCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence 599999999876 67899999999999999986 678999998763
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.20 E-value=1.2e-11 Score=79.26 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=41.9
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|.++ +.++|||.|+..||..|+..+.+||+|+.++.
T Consensus 29 ~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 29 EFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp TTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred hhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence 44699999999988 88999999999999999998889999998764
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.19 E-value=5.7e-12 Score=82.81 Aligned_cols=44 Identities=30% Similarity=0.804 Sum_probs=39.0
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhhCCC-CcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNE-NCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~-~CP~Cr~~v~ 133 (134)
.|+||++.+..+ +.++|||.||..||..|+.... .||+||.++.
T Consensus 20 ~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (118)
T 3hct_A 20 ECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (118)
T ss_dssp BCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence 599999999877 7789999999999999998765 8999998763
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.19 E-value=9.6e-12 Score=82.48 Aligned_cols=49 Identities=24% Similarity=0.728 Sum_probs=41.3
Q ss_pred CCcccccCccccCC----CceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERG----DRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~----~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+ ...+.++|||.||..|+.+|++.+++||+||.++.
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 34599999998753 33467789999999999999999999999998764
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.16 E-value=2.5e-11 Score=77.55 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=41.8
Q ss_pred CCcccccCccccCCCceEEecCC-ccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCG-HKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|.++ +.++|| |.|+..||.+|+..+.+||+|+.++.
T Consensus 22 ~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred hcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence 44699999999988 889999 99999999999998889999998764
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.14 E-value=2e-11 Score=72.07 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=38.0
Q ss_pred CcccccCccccCCCceEEe--cCCcc-ccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITL--PCGHK-YHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l--pC~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.+.+. +.+ ||||. |+..|+..|...++.||+||.++.
T Consensus 9 ~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 9 EPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp SCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 3599998886554 555 99999 899999999998899999998763
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.11 E-value=1.3e-11 Score=83.75 Aligned_cols=44 Identities=30% Similarity=0.703 Sum_probs=38.7
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCCC-CcccCCCcc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNE-NCCICREEV 132 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~-~CP~Cr~~v 132 (134)
..|+||+..+..+ +.++|||.||..||..|+.... .||+||.++
T Consensus 32 ~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 3599999999887 7789999999999999998654 899999864
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.10 E-value=4.5e-11 Score=92.75 Aligned_cols=45 Identities=29% Similarity=0.761 Sum_probs=39.6
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhh-CCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLR-DNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~ 133 (134)
..|+||++.+..+ +.+||||.||..|+..|+. ....||+||.++.
T Consensus 333 ~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~ 378 (389)
T 2y1n_A 333 QLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK 378 (389)
T ss_dssp SBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence 4699999988665 7889999999999999998 7889999998763
No 53
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=1.7e-11 Score=80.43 Aligned_cols=43 Identities=19% Similarity=0.580 Sum_probs=38.0
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.|..+ +.+ +|||.||..||..|+. ..||+||..+.
T Consensus 23 ~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred CCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 3599999999877 677 8999999999999987 78999998763
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.08 E-value=5.6e-11 Score=69.87 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=37.7
Q ss_pred CcccccCccccCCCceEEe--cCCcc-ccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITL--PCGHK-YHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l--pC~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|.||++.+.+. ..+ ||||. ||..|+..|...++.||+||.++.
T Consensus 8 ~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 8 KPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp SBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 3599998876544 445 99998 999999999988889999998763
No 55
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=1.8e-11 Score=70.30 Aligned_cols=43 Identities=26% Similarity=0.545 Sum_probs=36.8
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|+||++.|..+ +.+||+|.||..|+..| ...||+||+.+.
T Consensus 6 ~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 6 FLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred CCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence 44699999999887 67899999999999873 568999999875
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.07 E-value=8.7e-11 Score=71.98 Aligned_cols=48 Identities=23% Similarity=0.449 Sum_probs=36.4
Q ss_pred CCcccccCccccCCCce-EEecCCccccHHHHHHHhh-CCCCcccCCCcc
Q 045064 85 SHKCAICKLEYERGDRL-ITLPCGHKYHDECIKTWLR-DNENCCICREEV 132 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~-~~lpC~H~fh~~Ci~~wl~-~~~~CP~Cr~~v 132 (134)
...|+||++.+...+.. ..++|||.||..|+..++. ....||+||+++
T Consensus 11 ~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~ 60 (78)
T 1e4u_A 11 PVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60 (78)
T ss_dssp CCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBC
T ss_pred CCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34599999988643322 2234999999999999985 356899999875
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.05 E-value=5.3e-11 Score=72.09 Aligned_cols=40 Identities=25% Similarity=0.639 Sum_probs=35.2
Q ss_pred cccccCccccCCCceEEecCCcc-ccHHHHHHHhhCCCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHK-YHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
.|+||++.+..+ +.+||||. ||..|+..| ..||+||..+.
T Consensus 26 ~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 26 LCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp BCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 599999987765 78899999 999999998 88999998763
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=1.7e-10 Score=85.19 Aligned_cols=46 Identities=15% Similarity=0.066 Sum_probs=40.1
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCC-CCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDN-ENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~ 133 (134)
...|+||++.|.+| +.+||||.||..||..|+..+ .+||+||.++.
T Consensus 208 ~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 208 YLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp TTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred ccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 44699999999988 889999999999999999864 45999998764
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=2.7e-10 Score=72.01 Aligned_cols=44 Identities=25% Similarity=0.618 Sum_probs=37.9
Q ss_pred CCcccccCccccCCCceEEec-CCccccHHHHHHHhhCC------CCccc--CCCc
Q 045064 85 SHKCAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDN------ENCCI--CREE 131 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~------~~CP~--Cr~~ 131 (134)
...|+||++.|.++ +.++ |||.|+..||..|+..+ .+||+ |+..
T Consensus 7 ~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45699999999988 8886 99999999999999754 48999 8754
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.94 E-value=2.6e-10 Score=79.14 Aligned_cols=45 Identities=29% Similarity=0.779 Sum_probs=39.0
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCC-CCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDN-ENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~ 133 (134)
..|+||++.+..+ +.++|||.||..||.+|+... ..||+||..+.
T Consensus 19 ~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 64 (170)
T 3hcs_A 19 YECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL 64 (170)
T ss_dssp GBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred CCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence 3599999999877 678999999999999999764 48999998763
No 61
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.89 E-value=1.9e-10 Score=87.74 Aligned_cols=50 Identities=22% Similarity=0.598 Sum_probs=38.1
Q ss_pred CCCcccccCccccCCCceE-----EecCCccccHHHHHHHhhCC-----------CCcccCCCccc
Q 045064 84 PSHKCAICKLEYERGDRLI-----TLPCGHKYHDECIKTWLRDN-----------ENCCICREEVV 133 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~-----~lpC~H~fh~~Ci~~wl~~~-----------~~CP~Cr~~v~ 133 (134)
....|+||+..+.....+. ..+|+|.||..|+.+||++. ..||+||+++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 4456999999988732221 23599999999999999742 35999999875
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=5.7e-10 Score=67.56 Aligned_cols=40 Identities=25% Similarity=0.643 Sum_probs=33.5
Q ss_pred cccccCccccCCCceEEecCCcc-ccHHHHHHHhhCCCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHK-YHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
.|+||++.+..+ +.+||||. ||..|+.. ...||+||.++.
T Consensus 27 ~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~ 67 (75)
T 2ecg_A 27 LCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVIT 67 (75)
T ss_dssp SCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCC
T ss_pred CCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceec
Confidence 499999987765 67899999 99999965 378999998763
No 63
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.86 E-value=1.1e-09 Score=76.92 Aligned_cols=45 Identities=16% Similarity=0.071 Sum_probs=39.5
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCC-CCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDN-ENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~-~~CP~Cr~~v~ 133 (134)
..|+||++.|.+| +.+||||.|+..||..|+..+ .+||+|+.++.
T Consensus 107 f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 107 LCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 3599999999988 888999999999999999864 46999998764
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.81 E-value=1.2e-09 Score=66.90 Aligned_cols=40 Identities=30% Similarity=0.727 Sum_probs=34.0
Q ss_pred cccccCccccCCCceEEecCCcc-ccHHHHHHHhhCCCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHK-YHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
.|+||++.+... +.+||||. ||..|+..| ..||+||.++.
T Consensus 20 ~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 60 (79)
T 2yho_A 20 LCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE 60 (79)
T ss_dssp BCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred EeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence 499998887654 88899999 999999987 48999998763
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.3e-09 Score=63.87 Aligned_cols=42 Identities=33% Similarity=0.748 Sum_probs=34.5
Q ss_pred CCcccccCccccCCCceEEecCCcc-ccHHHHHHHhhCCCCcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHK-YHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
...|.||++.+... +.+||+|. ||..|+.. ...||+||..+.
T Consensus 15 ~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~ 57 (68)
T 2ea5_A 15 SKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ 57 (68)
T ss_dssp SSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred CCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence 34599998876554 88999999 99999984 478999998763
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.77 E-value=2.8e-09 Score=62.02 Aligned_cols=46 Identities=33% Similarity=0.645 Sum_probs=35.4
Q ss_pred CcccccCccccCCCceEEecCC--c---cccHHHHHHHhhC--CCCcccCCCcccC
Q 045064 86 HKCAICKLEYERGDRLITLPCG--H---KYHDECIKTWLRD--NENCCICREEVVV 134 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~--H---~fh~~Ci~~wl~~--~~~CP~Cr~~v~~ 134 (134)
..|.||+..... . ..+||. + .||..|+.+|+.. +.+||+|++++.+
T Consensus 7 ~~CrIC~~~~~~--~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 7 PVCWICNEELGN--E-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CEETTTTEECSC--C-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CEeEEeecCCCC--c-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 359999987433 2 357854 4 9999999999964 6789999998754
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=4.3e-09 Score=66.22 Aligned_cols=47 Identities=21% Similarity=0.477 Sum_probs=37.0
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhC--------CCCccc--CCCc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD--------NENCCI--CREE 131 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~--------~~~CP~--Cr~~ 131 (134)
...|+||++.+..+..+...+|+|.||..|+..|+.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3469999999876644444479999999999999963 236999 9987
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.72 E-value=5.5e-09 Score=77.05 Aligned_cols=45 Identities=24% Similarity=0.562 Sum_probs=37.9
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHHHhhCC--CCccc--CCCccc
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRDN--ENCCI--CREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~--~~CP~--Cr~~v~ 133 (134)
..|+||+..|..| +.. .|||.|+..||..|+..+ ..||+ |+..+.
T Consensus 182 l~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 182 LTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3499999999877 654 899999999999999764 46999 998653
No 69
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.68 E-value=7.7e-09 Score=60.31 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=40.0
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+|+++.+.++ +.+ ++||.|...||.+|+..+.+||+.+.++.
T Consensus 4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~ 49 (61)
T 2bay_A 4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 49 (61)
T ss_dssp CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence 3599999999977 777 79999999999999998888999998763
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.62 E-value=6.5e-09 Score=79.80 Aligned_cols=41 Identities=29% Similarity=0.716 Sum_probs=35.8
Q ss_pred CcccccCccccCCCceEEecCCcc-ccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHK-YHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~-fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..|+||++.+..+ +.+||||. ||..|+..| ..||+||..+.
T Consensus 296 ~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 296 RTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp CBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 4599999998766 78899999 999999988 78999998763
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.43 E-value=1.8e-07 Score=59.16 Aligned_cols=45 Identities=22% Similarity=0.474 Sum_probs=35.5
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhh-CCCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLR-DNENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~-~~~~CP~Cr~~v~ 133 (134)
-|.+|--.+. ...+.+||+|.||.+|+..|.+ +.++||.|+.+|.
T Consensus 3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 3777855554 3456779999999999999985 5788999998763
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.25 E-value=8.1e-07 Score=64.88 Aligned_cols=46 Identities=24% Similarity=0.601 Sum_probs=38.0
Q ss_pred CCcccccCccccCCCceEEec-CCccccHHHHHHHhhCCC--CcccCCCccc
Q 045064 85 SHKCAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDNE--NCCICREEVV 133 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~--~CP~Cr~~v~ 133 (134)
...|.||.+....+ ...+ |+|.||..|+..|++.+. .||.|+..++
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 44599999988876 5555 999999999999998654 8999998754
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.77 E-value=0.001 Score=41.43 Aligned_cols=46 Identities=22% Similarity=0.435 Sum_probs=35.4
Q ss_pred CCCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 84 PSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
....|..|+-... .++. =..|.+|..|+...|..+..||+|+.+++
T Consensus 27 G~~nCKsCWf~~k---~LV~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 27 GPQFCKSCWFENK---GLVE-CNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCCSSCSCCS---SEEE-CSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred CcccChhhccccC---Ceee-ecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 4456999976533 2222 15799999999999999999999998775
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.17 E-value=0.0033 Score=36.71 Aligned_cols=45 Identities=18% Similarity=0.482 Sum_probs=31.6
Q ss_pred CCCCcccccCccccCCCceEEe-cCCccccHHHHHHHhhC----CCCcccCCCc
Q 045064 83 LPSHKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD----NENCCICREE 131 (134)
Q Consensus 83 ~~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 131 (134)
.+...|.||... ..++.- .|...||..|+.+.+.. ...||.|+..
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 355569999643 333333 49999999999988754 3369999753
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.77 E-value=0.0092 Score=37.15 Aligned_cols=33 Identities=24% Similarity=0.550 Sum_probs=24.4
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHH
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTW 118 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~w 118 (134)
..|.||.+.+..+....-+.|+|.||..|+..+
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 459999976433323333789999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=94.86 E-value=0.024 Score=34.49 Aligned_cols=29 Identities=24% Similarity=0.885 Sum_probs=20.6
Q ss_pred CcccccCccccCCCceEEec---CCccccHHHHHHH
Q 045064 86 HKCAICKLEYERGDRLITLP---CGHKYHDECIKTW 118 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lp---C~H~fh~~Ci~~w 118 (134)
..|.||-. +... ..+| |+..||..|+.+.
T Consensus 16 ~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 16 EMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred cccCcccc-cccc---ceeccccccccccHhhcccc
Confidence 35999943 2233 2345 8899999999997
No 77
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=92.50 E-value=0.043 Score=38.23 Aligned_cols=45 Identities=24% Similarity=0.566 Sum_probs=32.6
Q ss_pred cccccCccccCCCc---eEEec-CCccccHHHHHHH------hh-----CCCCcccCCCc
Q 045064 87 KCAICKLEYERGDR---LITLP-CGHKYHDECIKTW------LR-----DNENCCICREE 131 (134)
Q Consensus 87 ~C~IC~~~~~~~~~---~~~lp-C~H~fh~~Ci~~w------l~-----~~~~CP~Cr~~ 131 (134)
.|+||...|..++. .+..- |...||..|+.-- +. ....||.|+..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 49999999987763 44443 9999999998431 11 15689999864
No 78
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=92.49 E-value=0.064 Score=29.16 Aligned_cols=43 Identities=21% Similarity=0.597 Sum_probs=27.7
Q ss_pred ccccCccccCCCceEEecCCccccHHHHHHHhhC----CCCcccCCC
Q 045064 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
|.||...-..+..+.--.|...||..|+.+=+.. ...||.|+.
T Consensus 3 C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 8888765333222222249999999999764433 335999965
No 79
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=91.91 E-value=0.098 Score=44.90 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=39.2
Q ss_pred cccccCccccCCCceEEecCC-ccccHHHHHHHhhCCCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCG-HKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~-H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
.|||-.+.+.+| +.+|.| +.|-..+|.+|+..+.+||+=|.++.
T Consensus 893 ~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~ 937 (968)
T 3m62_A 893 LDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK 937 (968)
T ss_dssp BCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence 499999999988 889987 68999999999999999999887653
No 80
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=90.86 E-value=0.028 Score=32.20 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=30.8
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHHHhh-----CCCCcccCCC
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLR-----DNENCCICRE 130 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~-----~~~~CP~Cr~ 130 (134)
..|++|...+......+.. .|...||..|+.--.. ....||.|+.
T Consensus 7 ~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 3599999887654444443 4999999999874322 2346999854
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.69 E-value=0.056 Score=31.88 Aligned_cols=44 Identities=23% Similarity=0.479 Sum_probs=29.6
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHhhC----CCCcccCCCc
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD----NENCCICREE 131 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 131 (134)
.|.||..... +...+.. .|...||..|+..-... ...||.|+..
T Consensus 20 ~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 20 ICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp CBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred CCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 3999977653 3333333 49999999999865432 3469999643
No 82
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=90.13 E-value=0.49 Score=29.97 Aligned_cols=33 Identities=33% Similarity=0.735 Sum_probs=21.8
Q ss_pred CCCcccccCcccc-----CCCceEE-ecCCccccHHHHH
Q 045064 84 PSHKCAICKLEYE-----RGDRLIT-LPCGHKYHDECIK 116 (134)
Q Consensus 84 ~~~~C~IC~~~~~-----~~~~~~~-lpC~H~fh~~Ci~ 116 (134)
|...|.+|+..-. .++.++. ..|+..||..|+.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 4456999987532 2223333 3499999999995
No 83
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=88.54 E-value=0.2 Score=28.32 Aligned_cols=43 Identities=26% Similarity=0.679 Sum_probs=29.1
Q ss_pred CCcccccCccccCCCceEEe-cCCccccHHHHHHHhhC----CCCcccCCCc
Q 045064 85 SHKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD----NENCCICREE 131 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 131 (134)
...|.+|... + .++.. .|...||..|+.+-+.. ...||.|+..
T Consensus 11 ~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 11 QDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3459999763 2 33333 48899999999985532 3469999753
No 84
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=88.49 E-value=0.41 Score=27.51 Aligned_cols=33 Identities=27% Similarity=0.587 Sum_probs=24.6
Q ss_pred CCCcccccCccccCCCceEEe--cCCccccHHHHH
Q 045064 84 PSHKCAICKLEYERGDRLITL--PCGHKYHDECIK 116 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~ 116 (134)
+...|++|...+......+.. .|.-.||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 445699999998766555554 599999999985
No 85
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=88.27 E-value=0.33 Score=26.49 Aligned_cols=43 Identities=14% Similarity=0.369 Sum_probs=28.6
Q ss_pred cccccCccccCCCceEEe--cCCccccHHHHHHHh----hCCCCcccCC
Q 045064 87 KCAICKLEYERGDRLITL--PCGHKYHDECIKTWL----RDNENCCICR 129 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~wl----~~~~~CP~Cr 129 (134)
.|.+|...+..+...+.- .|...||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 378898888655444443 388899999976321 2456799885
No 86
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=88.12 E-value=0.27 Score=30.97 Aligned_cols=47 Identities=21% Similarity=0.431 Sum_probs=31.9
Q ss_pred CCCcccccCccccCCCceEEe--cCCccccHHHHHHHh----------hCCCCcccCCC
Q 045064 84 PSHKCAICKLEYERGDRLITL--PCGHKYHDECIKTWL----------RDNENCCICRE 130 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~wl----------~~~~~CP~Cr~ 130 (134)
|...|.||...+......+.. .|...||..|+.--- .....||.|+.
T Consensus 2 ~~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~ 60 (105)
T 2xb1_A 2 LVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLK 60 (105)
T ss_dssp CCCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHH
T ss_pred CcCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccC
Confidence 345699999998665444444 489999999985221 02346999954
No 87
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=87.44 E-value=0.14 Score=31.92 Aligned_cols=44 Identities=20% Similarity=0.447 Sum_probs=29.0
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhC---CCCcccCCC
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD---NENCCICRE 130 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~---~~~CP~Cr~ 130 (134)
..| ||......+..+..-.|...||..|+..-+.. ...||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 458 89776655433332249999999999764332 346999974
No 88
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.18 E-value=0.39 Score=28.51 Aligned_cols=43 Identities=23% Similarity=0.571 Sum_probs=28.4
Q ss_pred ccccCccccCCCceEEe-cCCccccHHHHHHHhh-----CCCCcccCCCc
Q 045064 88 CAICKLEYERGDRLITL-PCGHKYHDECIKTWLR-----DNENCCICREE 131 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~-----~~~~CP~Cr~~ 131 (134)
| ||...+......+.. .|...||..|+.--.. ....||.|+..
T Consensus 15 C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 63 (79)
T 1wep_A 15 C-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63 (79)
T ss_dssp S-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTT
T ss_pred E-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccc
Confidence 6 898877534344443 4999999999853211 34569999753
No 89
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=84.30 E-value=0.3 Score=31.02 Aligned_cols=43 Identities=28% Similarity=0.619 Sum_probs=27.3
Q ss_pred ccccCccccCCCceEEe-cCCccccHHHHHHHhhC----CCCcccCCC
Q 045064 88 CAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
|.+|...-.....++.- .|...||..|+.+-+.. ...||.|+.
T Consensus 64 C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 64 CSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp BTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred cccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 66776542222233333 39999999999765543 346999975
No 90
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=83.59 E-value=0.81 Score=35.21 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=29.6
Q ss_pred ccccCccccCCCceEEecCCcc--ccHHHHHHHhhC--CCCcccCCCccc
Q 045064 88 CAICKLEYERGDRLITLPCGHK--YHDECIKTWLRD--NENCCICREEVV 133 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~lpC~H~--fh~~Ci~~wl~~--~~~CP~Cr~~v~ 133 (134)
|++-...+..+ ++...|.|. |-..-+.....+ ...||+|.+.+.
T Consensus 252 CPlS~~ri~~P--vRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 252 CPISYTRMKYP--SKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp CTTTSSBCSSE--EEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred CCCcccccccc--CcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 99887777655 444569998 666555544433 446999988653
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=83.07 E-value=0.2 Score=35.29 Aligned_cols=41 Identities=29% Similarity=0.666 Sum_probs=28.1
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHHHhhC----CCCcccCCC
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
..|.+|... + .++.. .|...||..|+.+-+.. ...||.|+.
T Consensus 8 ~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 53 (207)
T 3u5n_A 8 DWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD 53 (207)
T ss_dssp SSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence 459999643 2 23333 38999999999876643 346999975
No 92
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=82.87 E-value=0.9 Score=34.81 Aligned_cols=44 Identities=14% Similarity=0.337 Sum_probs=30.1
Q ss_pred ccccCccccCCCceEEecCCcc--ccHHHHHHHhhC--CCCcccCCCccc
Q 045064 88 CAICKLEYERGDRLITLPCGHK--YHDECIKTWLRD--NENCCICREEVV 133 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~lpC~H~--fh~~Ci~~wl~~--~~~CP~Cr~~v~ 133 (134)
|++-...+..+ ++...|.|. |-..-+..+..+ ...||+|.+.+.
T Consensus 218 CPlS~~ri~~P--~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 218 CPLGKMRLTIP--CRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp CTTTCSBCSSE--EEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred CCCccceeccC--CcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 99887777655 444569998 766555555443 346999998764
No 93
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=82.72 E-value=0.45 Score=32.30 Aligned_cols=43 Identities=28% Similarity=0.590 Sum_probs=28.6
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHh-----hCCCCcccCCC
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWL-----RDNENCCICRE 130 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl-----~~~~~CP~Cr~ 130 (134)
.| +|..........+.. .|...||..|+.--. .....||.|+.
T Consensus 10 ~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 10 YC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp ET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred Ee-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 48 998876544444444 399999999995211 23456999964
No 94
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=82.40 E-value=0.22 Score=34.27 Aligned_cols=41 Identities=29% Similarity=0.712 Sum_probs=28.5
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHHHhhC----CCCcccCCC
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
..|.+|... ++ ++.. .|...||..|+.+-+.. ...||.|+.
T Consensus 5 ~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~ 50 (184)
T 3o36_A 5 DWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD 50 (184)
T ss_dssp SSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred CccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccC
Confidence 349999643 33 3333 38999999999876643 346999975
No 95
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=82.37 E-value=0.84 Score=27.48 Aligned_cols=37 Identities=22% Similarity=0.422 Sum_probs=29.0
Q ss_pred CCCcccccCccccCCCceEEec--CCccccHHHHHHHhhC
Q 045064 84 PSHKCAICKLEYERGDRLITLP--CGHKYHDECIKTWLRD 121 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~lp--C~H~fh~~Ci~~wl~~ 121 (134)
....|.+|.+.+++...+ +.| =.|.||-.|-...+++
T Consensus 14 a~l~CtlC~erLEdtHFV-QCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFV-QCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSE-ECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCcee-eCCCccCCeeeccccHHHHHh
Confidence 445699999999876544 455 5799999999999864
No 96
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.28 E-value=0.28 Score=29.22 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=27.0
Q ss_pred ccccCccccCCCceEEe-cCCccccHHHHHHHhhC-----CCCcccCCC
Q 045064 88 CAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD-----NENCCICRE 130 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~-----~~~CP~Cr~ 130 (134)
|.||...-..+ .++.- .|...||..|+.+=+.. ...||.|..
T Consensus 29 C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 29 CRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp CSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 67786542222 33332 49999999999865532 346999975
No 97
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.23 E-value=0.42 Score=30.13 Aligned_cols=44 Identities=25% Similarity=0.634 Sum_probs=27.6
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhC----CCCcccC
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD----NENCCIC 128 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~~CP~C 128 (134)
...|.||...=...+.+.--.|...||..|+...+.. ...||.|
T Consensus 7 ~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C 54 (111)
T 2ysm_A 7 GANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC 54 (111)
T ss_dssp CSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT
T ss_pred CCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC
Confidence 4459999765322222333359999999999877642 2346655
No 98
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=79.93 E-value=0.2 Score=28.32 Aligned_cols=43 Identities=28% Similarity=0.545 Sum_probs=28.1
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhC----CCCcccCCCc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD----NENCCICREE 131 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~~CP~Cr~~ 131 (134)
..|.+|... ++.+.--.|...||..|+.+-+.. ...||.|+..
T Consensus 10 ~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 10 EFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 349999642 222222238899999999865543 3359999764
No 99
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=79.92 E-value=0.28 Score=28.59 Aligned_cols=43 Identities=23% Similarity=0.585 Sum_probs=26.4
Q ss_pred ccccCccccCCCceEEe-cCCccccHHHHHHHhhC-----CCCcccCCCc
Q 045064 88 CAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD-----NENCCICREE 131 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~-----~~~CP~Cr~~ 131 (134)
|.+|...-.. ..++.- .|...||..|+.+=+.. .-.||.|+.+
T Consensus 21 C~~C~~~~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 21 CHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp BTTTCCCSCG-GGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CcCCCCcCCC-CCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 5566543222 223322 38899999999865532 3469999754
No 100
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=79.40 E-value=0.67 Score=26.16 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=29.7
Q ss_pred cccccCccccCCCceEEec-CCccccHHHHHHHhhCCCCcccC
Q 045064 87 KCAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDNENCCIC 128 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~~CP~C 128 (134)
.|..|...+... ....-+ |++.||.+|=.-.-+.-..||.|
T Consensus 17 ~C~~C~~~~~~~-~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQ-HVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTS-EEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCC-ccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 499998888543 122344 99999999977655556679988
No 101
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=79.37 E-value=0.21 Score=29.78 Aligned_cols=27 Identities=26% Similarity=0.620 Sum_probs=19.4
Q ss_pred cCCccccHHHHHHHhhC----C-CCcccCCCc
Q 045064 105 PCGHKYHDECIKTWLRD----N-ENCCICREE 131 (134)
Q Consensus 105 pC~H~fh~~Ci~~wl~~----~-~~CP~Cr~~ 131 (134)
.|...||..|+.+-|.. . ..||.|+.+
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 38899999999976543 2 469999753
No 102
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=78.73 E-value=0.39 Score=28.24 Aligned_cols=42 Identities=21% Similarity=0.517 Sum_probs=27.4
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHh---------hCCCCcccCCC
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWL---------RDNENCCICRE 130 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl---------~~~~~CP~Cr~ 130 (134)
.| ||...+... ..+.. .|...||..|+.--. .....||.|+.
T Consensus 18 ~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~ 69 (76)
T 1wem_A 18 YC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred EE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence 37 898876533 33333 499999999985211 24567999964
No 103
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=76.60 E-value=2.6 Score=27.95 Aligned_cols=40 Identities=30% Similarity=0.667 Sum_probs=27.7
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHhh-----------CCCCcccCCC
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWLR-----------DNENCCICRE 130 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~-----------~~~~CP~Cr~ 130 (134)
.|.+|.+. + .+... .|-..||..|+.+-+. ....||.|+.
T Consensus 65 ~C~vC~~G---G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 65 QCRWCAEG---G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCSSSCCC---S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred eecccCCC---C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 49999543 2 23332 4889999999997652 2446999974
No 104
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.31 E-value=1.8 Score=24.77 Aligned_cols=30 Identities=27% Similarity=0.779 Sum_probs=17.8
Q ss_pred CCCcccccCccccCCCceEEecCCccccHHH
Q 045064 84 PSHKCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
....|+.|-..+...+.++. .-+..||..|
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~-a~~~~~H~~C 39 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQC 39 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEE-ETTEEECTTT
T ss_pred CCCCchhcCCccCCCceEEE-eCccEecccc
Confidence 34468888877764444332 2456677665
No 105
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=75.84 E-value=0.24 Score=28.41 Aligned_cols=42 Identities=31% Similarity=0.733 Sum_probs=27.8
Q ss_pred CCCcccccCccccCCCceEEe-cCCccccHHHHHHHhhC----CCCcccCC
Q 045064 84 PSHKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD----NENCCICR 129 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~CP~Cr 129 (134)
....|.||... + .++.. .|...||..|+.+-+.. ...||.|.
T Consensus 7 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~ 53 (66)
T 1xwh_A 7 NEDECAVCRDG---G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL 53 (66)
T ss_dssp CCCSBSSSSCC---S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHH
T ss_pred CCCCCccCCCC---C-CEEEcCCCChhhcccccCCCcCcCCCCCeECcccc
Confidence 34459999753 2 33333 48899999999865532 33598884
No 106
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=75.56 E-value=0.58 Score=33.60 Aligned_cols=44 Identities=20% Similarity=0.534 Sum_probs=24.7
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHhhC-----CCCcccCCCc
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD-----NENCCICREE 131 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~-----~~~CP~Cr~~ 131 (134)
.|.+|...-..+ .++.. .|...||..|+.+=+.. ...||.|+.+
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 377886542222 23333 49999999999965532 3469999753
No 107
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.39 E-value=0.67 Score=28.35 Aligned_cols=40 Identities=28% Similarity=0.725 Sum_probs=27.8
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHhhC----CCCcccCCC
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
.|.+|... + .++.. .|...||..|+.+=+.. ...||.|+.
T Consensus 27 ~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 27 ICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp CCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred cCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 49999754 3 23333 38899999999876643 336999974
No 108
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.83 E-value=0.24 Score=30.47 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=28.9
Q ss_pred CCcccccCccccCCCceEEe-cCCccccHHHHHHHhhC----CCCcccCCC
Q 045064 85 SHKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
...|.||...-... .++.. .|...||..|+.+=+.. ...||.|..
T Consensus 16 ~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 16 SYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 34599997664322 33333 49999999999854432 335998853
No 109
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.76 E-value=0.17 Score=28.12 Aligned_cols=42 Identities=26% Similarity=0.673 Sum_probs=27.2
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhC----CCCcccCCC
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
..|.+|... ++.+.--.|...||..|+.+-+.. ...||.|..
T Consensus 10 ~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 10 DFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 359999764 222222248999999999865543 235888853
No 110
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=73.46 E-value=0.4 Score=27.77 Aligned_cols=44 Identities=25% Similarity=0.521 Sum_probs=27.9
Q ss_pred CCcccccCccccCCCceEEe-cCCccccHHHHHHHhh---CCCCcccCCC
Q 045064 85 SHKCAICKLEYERGDRLITL-PCGHKYHDECIKTWLR---DNENCCICRE 130 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~---~~~~CP~Cr~ 130 (134)
...| ||...+. +...+.. .|...||..|+.--.. ....||.|+.
T Consensus 19 ~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 3348 9987665 3333333 4999999999874321 2346888864
No 111
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=72.76 E-value=2.3 Score=26.92 Aligned_cols=32 Identities=22% Similarity=0.521 Sum_probs=20.7
Q ss_pred cccccCccccC------CCceEE-ecCCccccHHHHHHH
Q 045064 87 KCAICKLEYER------GDRLIT-LPCGHKYHDECIKTW 118 (134)
Q Consensus 87 ~C~IC~~~~~~------~~~~~~-lpC~H~fh~~Ci~~w 118 (134)
.|.+|+..-.. +..++. ..|+..||..|+...
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 48999875421 122333 349999999998754
No 112
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=72.48 E-value=0.42 Score=26.78 Aligned_cols=42 Identities=26% Similarity=0.673 Sum_probs=27.3
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhC----CCCcccCCC
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
..|.+|... ++.+.--.|...||..|+.+-+.. ...||.|..
T Consensus 6 ~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 6 DFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp SSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 459999763 222222248999999999865543 335888854
No 113
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=71.42 E-value=0.52 Score=28.67 Aligned_cols=45 Identities=22% Similarity=0.558 Sum_probs=29.6
Q ss_pred CcccccCccccCC-CceEEe-cCCccccHHHHHHHhh--------CCCCcccCCC
Q 045064 86 HKCAICKLEYERG-DRLITL-PCGHKYHDECIKTWLR--------DNENCCICRE 130 (134)
Q Consensus 86 ~~C~IC~~~~~~~-~~~~~l-pC~H~fh~~Ci~~wl~--------~~~~CP~Cr~ 130 (134)
..|.+|...-... ..++.. .|...||..|+.+-+. ....|+.|+.
T Consensus 17 ~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~ 71 (88)
T 1wev_A 17 LACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccc
Confidence 3599998764322 233333 3999999999987543 2446888853
No 114
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=70.43 E-value=3.3 Score=23.96 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=22.2
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHH
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKT 117 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~ 117 (134)
..|.+|...|..-..-... .||.+||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4699999988743222222 3999999999653
No 115
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=70.32 E-value=1.3 Score=26.83 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=28.7
Q ss_pred CCcccccCcccc-CCCceEEe-cCCccccHHHHHHHhh--CCCCcccCCC
Q 045064 85 SHKCAICKLEYE-RGDRLITL-PCGHKYHDECIKTWLR--DNENCCICRE 130 (134)
Q Consensus 85 ~~~C~IC~~~~~-~~~~~~~l-pC~H~fh~~Ci~~wl~--~~~~CP~Cr~ 130 (134)
...|.||...-. ..+.++.. .|.-.||..|+..-+. ....||.|..
T Consensus 25 ~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~ 74 (88)
T 2l43_A 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 74 (88)
T ss_dssp CCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccC
Confidence 345999976532 22233333 3889999999985432 2446988854
No 116
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=70.32 E-value=0.65 Score=32.22 Aligned_cols=41 Identities=27% Similarity=0.696 Sum_probs=27.3
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhhC----CCCcccCCC
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
.|.+|... ++.+..-.|...||..|+.+=+.. ...||.|+.
T Consensus 4 ~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~ 48 (189)
T 2ro1_A 4 ICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 48 (189)
T ss_dssp CBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred cCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence 49999643 332222248899999999765532 336999975
No 117
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=68.86 E-value=0.53 Score=30.44 Aligned_cols=42 Identities=19% Similarity=0.481 Sum_probs=26.5
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHhhCCCCcccC
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWLRDNENCCIC 128 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~~~~~CP~C 128 (134)
.|..|...|..-..-... .||.+||..|.........+|-.|
T Consensus 21 ~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 21 SCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp CCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 599999988643222223 499999999976655445566655
No 118
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=67.77 E-value=1.5 Score=25.55 Aligned_cols=40 Identities=28% Similarity=0.646 Sum_probs=24.6
Q ss_pred cccccCccccCCCceEEe-c--CC-ccccHHHHHHHhhC----CCCcccCCCc
Q 045064 87 KCAICKLEYERGDRLITL-P--CG-HKYHDECIKTWLRD----NENCCICREE 131 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-p--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~ 131 (134)
.| ||..... +. .+.. . |. ..||..|+. |.. ...||.|+..
T Consensus 18 ~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 18 YC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred EE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 47 8977543 32 2222 2 55 689999998 432 3359999753
No 119
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=67.40 E-value=2.4 Score=26.48 Aligned_cols=12 Identities=25% Similarity=1.030 Sum_probs=10.5
Q ss_pred cccHHHHHHHhh
Q 045064 109 KYHDECIKTWLR 120 (134)
Q Consensus 109 ~fh~~Ci~~wl~ 120 (134)
.||..|+.+|+.
T Consensus 42 GFCRNCLskWy~ 53 (105)
T 2o35_A 42 GFCRNCLSNWYR 53 (105)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999984
No 120
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=67.25 E-value=2.4 Score=26.41 Aligned_cols=12 Identities=25% Similarity=0.983 Sum_probs=10.5
Q ss_pred cccHHHHHHHhh
Q 045064 109 KYHDECIKTWLR 120 (134)
Q Consensus 109 ~fh~~Ci~~wl~ 120 (134)
.||..|+.+|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999985
No 121
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.15 E-value=3.1 Score=24.30 Aligned_cols=37 Identities=30% Similarity=0.672 Sum_probs=23.4
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
..|..|-..+...+.+.. -+..||..| ..|-.|+..|
T Consensus 16 ~~C~~C~~~I~~~~~v~a--~~~~wH~~C--------F~C~~C~~~L 52 (80)
T 2dj7_A 16 SHCAGCKEEIKHGQSLLA--LDKQWHVSC--------FKCQTCSVIL 52 (80)
T ss_dssp SCCTTTCCCCSSSCCEEE--TTEEECTTT--------CBCSSSCCBC
T ss_pred CCCcCcCCeeCCCeEEEE--CCccccccc--------CCcCcCCCCc
Confidence 359999888765544432 466778766 3466676544
No 122
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=66.55 E-value=3.2 Score=26.78 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=22.8
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHH
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTW 118 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w 118 (134)
.|.+|...|..-..-... .||++||..|....
T Consensus 71 ~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 71 NCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 499999998744322233 49999999997654
No 123
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=66.03 E-value=8.7 Score=24.99 Aligned_cols=40 Identities=28% Similarity=0.624 Sum_probs=26.6
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHh-----------hCCCCcccCCC
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWL-----------RDNENCCICRE 130 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl-----------~~~~~CP~Cr~ 130 (134)
.|.+|.+. ..+..- .|-..||..|+.+-+ .....|++|+.
T Consensus 59 ~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 59 QCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp SCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred cCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 49999543 222222 388999999999752 12357999964
No 124
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=64.74 E-value=3.4 Score=23.22 Aligned_cols=46 Identities=28% Similarity=0.683 Sum_probs=29.9
Q ss_pred CCcccccCccccCC-CceEEe-cCCccccHHHHHHHh-------hCCCCcccCCC
Q 045064 85 SHKCAICKLEYERG-DRLITL-PCGHKYHDECIKTWL-------RDNENCCICRE 130 (134)
Q Consensus 85 ~~~C~IC~~~~~~~-~~~~~l-pC~H~fh~~Ci~~wl-------~~~~~CP~Cr~ 130 (134)
...|.||....... ..++.. .|...||..|+.+-+ .....||.|..
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~ 60 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcC
Confidence 44599998765432 233333 499999999988643 23446888854
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=64.61 E-value=3.2 Score=29.19 Aligned_cols=34 Identities=21% Similarity=0.578 Sum_probs=23.6
Q ss_pred CCcccccCccccCCCceEEe-cCCccccHHHHHHH
Q 045064 85 SHKCAICKLEYERGDRLITL-PCGHKYHDECIKTW 118 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w 118 (134)
...|.+|...|..-..-... .||+.||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 34599999988744322333 39999999996643
No 126
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.85 E-value=2 Score=26.32 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=24.8
Q ss_pred cccccCccccCCCceEEec--CC-ccccHHHHHHHhhC----CCCcccCCCc
Q 045064 87 KCAICKLEYERGDRLITLP--CG-HKYHDECIKTWLRD----NENCCICREE 131 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lp--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~~ 131 (134)
.| ||..... +..+..=. |. ..||..|+. +.. ...||.|+..
T Consensus 38 yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 38 YC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred EE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 37 9977643 32221112 54 689999997 332 3469999753
No 127
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=63.68 E-value=1.3 Score=27.91 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=14.3
Q ss_pred cCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 105 PCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 105 pC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
.||+.|. .-+.....||.|+.+-
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEW 94 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCC
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCc
Confidence 4788771 1123456799998753
No 128
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.65 E-value=3.5 Score=29.21 Aligned_cols=34 Identities=18% Similarity=0.615 Sum_probs=23.7
Q ss_pred CCcccccCccccCCCceEEe-cCCccccHHHHHHH
Q 045064 85 SHKCAICKLEYERGDRLITL-PCGHKYHDECIKTW 118 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w 118 (134)
...|.+|...|..-..-... .||..||..|....
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 34599999988744322333 49999999997644
No 129
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.06 E-value=6.6 Score=23.18 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=13.3
Q ss_pred cccccCccccCCCceEEecCCccccHHH
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
.|..|-..+... ....-+..||..|
T Consensus 27 ~C~~C~~~I~~~---~v~a~~~~~H~~C 51 (90)
T 2dar_A 27 MCAHCNQVIRGP---FLVALGKSWHPEE 51 (90)
T ss_dssp BBSSSCCBCCSC---EEEETTEEECTTT
T ss_pred CCccCCCEecce---EEEECCccccccC
Confidence 477776666321 2223456666655
No 130
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=62.45 E-value=10 Score=23.10 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=33.0
Q ss_pred CCCcccccCccccCCC---c-eEEecCCccccHHHHHHHhh-CCCCcccCCCcc
Q 045064 84 PSHKCAICKLEYERGD---R-LITLPCGHKYHDECIKTWLR-DNENCCICREEV 132 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~---~-~~~lpC~H~fh~~Ci~~wl~-~~~~CP~Cr~~v 132 (134)
....|.||-++..... . +...-|+--.|..|..-=.+ .+..||-|+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcc
Confidence 3446999988865332 1 22223787889999876554 577899998753
No 131
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.37 E-value=3.8 Score=23.64 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 85 SHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
...|..|-..+... ....-+..||..|+ .|-.|+..|
T Consensus 15 ~~~C~~C~~~I~~~---~~~a~~~~~H~~CF--------~C~~C~~~L 51 (79)
T 1x62_A 15 LPMCDKCGTGIVGV---FVKLRDRHRHPECY--------VCTDCGTNL 51 (79)
T ss_dssp CCCCSSSCCCCCSS---CEECSSCEECTTTT--------SCSSSCCCH
T ss_pred CCccccCCCCccCc---EEEECcceeCcCcC--------eeCCCCCCC
Confidence 34599998877643 22345778887773 466666554
No 132
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=62.28 E-value=3.6 Score=23.67 Aligned_cols=28 Identities=29% Similarity=0.693 Sum_probs=21.6
Q ss_pred ccccCccccCCCceEEecC-CccccHHHHHHHh
Q 045064 88 CAICKLEYERGDRLITLPC-GHKYHDECIKTWL 119 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~lpC-~H~fh~~Ci~~wl 119 (134)
|.||.++ ..++.+.| +-.||..|....-
T Consensus 11 C~ICneD----AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 11 CCICNED----ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CTTTCSC----CCEEETTTTSEEECSSHHHHHT
T ss_pred eEEeCCC----CeEEecCCCCceehHHHHHHHc
Confidence 9999776 34566678 7899999987754
No 133
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.23 E-value=5.9 Score=22.53 Aligned_cols=37 Identities=22% Similarity=0.582 Sum_probs=22.2
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
..|..|-..+...+.+. .-+..||..| ..|..|+..|
T Consensus 10 ~~C~~C~~~I~~~~~v~--a~~~~~H~~C--------F~C~~C~~~L 46 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVS--SLGKDWHKFC--------LKCERCSKTL 46 (76)
T ss_dssp CBCTTTCCBCCTTTEEE--ETTEEEETTT--------CBCSSSCCBC
T ss_pred CCCcCCCCEeECCeEEE--ECCeEeeCCC--------CCCCCCCCcc
Confidence 35888877776554332 3466777666 3466665544
No 134
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.94 E-value=8 Score=21.60 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=6.9
Q ss_pred CccccHHHHHHHhh
Q 045064 107 GHKYHDECIKTWLR 120 (134)
Q Consensus 107 ~H~fh~~Ci~~wl~ 120 (134)
+..||..|..+.+.
T Consensus 53 ~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 53 RRAYCEGCYVATLE 66 (72)
T ss_dssp SCEEEHHHHHHHHH
T ss_pred CeEECHHHHHHHHc
Confidence 44555555554443
No 135
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=61.79 E-value=5 Score=22.09 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=13.5
Q ss_pred CcccccCccccCCCceEEecCCccccHHH
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
..|+.|-..+. +. ....-+..||..|
T Consensus 6 ~~C~~C~~~I~-~~--~~~a~~~~~H~~C 31 (66)
T 1nyp_A 6 PICGACRRPIE-GR--VVNAMGKQWHVEH 31 (66)
T ss_dssp CEETTTTEECC-SC--EECCTTSBEETTT
T ss_pred CCCcccCCEec-ce--EEEECccccccCc
Confidence 34777766655 21 2223455666655
No 136
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=61.05 E-value=7.8 Score=21.50 Aligned_cols=10 Identities=30% Similarity=0.664 Sum_probs=4.8
Q ss_pred cccccCcccc
Q 045064 87 KCAICKLEYE 96 (134)
Q Consensus 87 ~C~IC~~~~~ 96 (134)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8z_A 7 GCVQCKKPIT 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred CCcccCCeec
Confidence 3555554443
No 137
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=60.29 E-value=9.5 Score=21.97 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=29.1
Q ss_pred CCcccccCccc-cCCCceEEe-cCCccccHHHHHHHh--hCCCCcccCCC
Q 045064 85 SHKCAICKLEY-ERGDRLITL-PCGHKYHDECIKTWL--RDNENCCICRE 130 (134)
Q Consensus 85 ~~~C~IC~~~~-~~~~~~~~l-pC~H~fh~~Ci~~wl--~~~~~CP~Cr~ 130 (134)
...|.||...- ...+.++.. .|.-.||..|+..-. +....||.|+.
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 34599997653 222333333 499999999998543 12346888853
No 138
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=60.22 E-value=3.3 Score=23.64 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=24.5
Q ss_pred CcccccCccccCCCceEEecCCccccH-HHHHHHhhCCCCcccCCCc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHD-ECIKTWLRDNENCCICREE 131 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~-~Ci~~wl~~~~~CP~Cr~~ 131 (134)
..|..|...+...... ..=+..||. .|..+. ....|..|...
T Consensus 28 F~C~~C~~~L~~~~~~--~~~g~~yC~~~cy~~~--f~~~C~~C~~~ 70 (76)
T 1iml_A 28 LKCEKCGKTLTSGGHA--EHEGKPYCNHPCYSAM--FGPKGFGRGGA 70 (76)
T ss_dssp CBCTTTCCBCCTTTEE--EETTEEEETTTHHHHH--SSCCCSSCCCS
T ss_pred CCccccCccCCCCceE--CcCCeEeeCHHHHHHH--hCccCCCcCCc
Confidence 3477887777654322 234566777 576654 34557777543
No 139
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=60.07 E-value=8.4 Score=21.29 Aligned_cols=40 Identities=25% Similarity=0.757 Sum_probs=25.4
Q ss_pred CCCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 84 PSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
....|..|...+...+.++. .-+..||..|. .|-.|+..+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~-~~~~~~H~~CF--------~C~~C~~~L 49 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVN-SNGELYHEQCF--------VCAQCFQQF 49 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEE-ETTEEEETTTS--------SCTTTCCCC
T ss_pred CCccchhcCccccCCceEEE-eCcCeeCcCCC--------cccCCCCCC
Confidence 34469999888776554433 35667887763 466666554
No 140
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.63 E-value=8.8 Score=21.38 Aligned_cols=27 Identities=30% Similarity=0.652 Sum_probs=12.8
Q ss_pred cccccCccccCCCceEEecCCccccHHH
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
.|..|-..+...+.++. .-+..||..|
T Consensus 7 ~C~~C~~~I~~~~~~~~-a~~~~~H~~C 33 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKME-YKGSSWHETC 33 (72)
T ss_dssp CBSSSCCCCCSSSCEEE-ETTEEEETTT
T ss_pred CCccCCCcccCCceEEE-ECcCeecccC
Confidence 46666665554322222 2344555544
No 141
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.55 E-value=6.9 Score=21.84 Aligned_cols=10 Identities=20% Similarity=0.504 Sum_probs=5.2
Q ss_pred cccccCcccc
Q 045064 87 KCAICKLEYE 96 (134)
Q Consensus 87 ~C~IC~~~~~ 96 (134)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (72)
T 1wyh_A 7 GCSACGETVM 16 (72)
T ss_dssp BCSSSCCBCC
T ss_pred CCccCCCccc
Confidence 3555555544
No 142
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=59.30 E-value=5.4 Score=24.06 Aligned_cols=33 Identities=18% Similarity=0.504 Sum_probs=23.1
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHh
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWL 119 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl 119 (134)
.|.+|...|..-..-... .||++||..|...+.
T Consensus 22 ~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 22 NCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 499999988743322222 499999999976543
No 143
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=58.30 E-value=6.9 Score=23.22 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=22.7
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHH
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTW 118 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w 118 (134)
.|.+|...|..-..-... .||.+||..|....
T Consensus 23 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 23 ACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp BCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 599999998754322222 39999999997654
No 144
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.69 E-value=6.3 Score=21.89 Aligned_cols=10 Identities=20% Similarity=0.594 Sum_probs=5.1
Q ss_pred cccccCcccc
Q 045064 87 KCAICKLEYE 96 (134)
Q Consensus 87 ~C~IC~~~~~ 96 (134)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (69)
T 2cur_A 7 GCVKCNKAIT 16 (69)
T ss_dssp CCSSSCCCCC
T ss_pred CCcccCCEeC
Confidence 3555555543
No 145
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.46 E-value=11 Score=21.09 Aligned_cols=28 Identities=25% Similarity=0.602 Sum_probs=14.6
Q ss_pred CcccccCccccC--CCceEEecCCccccHHH
Q 045064 86 HKCAICKLEYER--GDRLITLPCGHKYHDEC 114 (134)
Q Consensus 86 ~~C~IC~~~~~~--~~~~~~lpC~H~fh~~C 114 (134)
..|..|-..+.. ...++. .-+..||..|
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~-a~~~~wH~~C 35 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYIS-FEERQWHNDC 35 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEE-CSSCEECTTT
T ss_pred CCCcCCCccccCCCCcceEE-ECCcccCccc
Confidence 347777666654 222222 2456666655
No 146
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=56.55 E-value=6.8 Score=23.12 Aligned_cols=32 Identities=25% Similarity=0.609 Sum_probs=22.4
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHH
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTW 118 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~w 118 (134)
.|.+|...|..-..-... .||.+||..|....
T Consensus 21 ~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 21 HCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 599999988743222222 39999999997643
No 147
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=54.58 E-value=2.6 Score=32.33 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=0.0
Q ss_pred CcccccCccccCCCceE-EecCCccccHHHHHHHhh-------CCCCcccCCCc
Q 045064 86 HKCAICKLEYERGDRLI-TLPCGHKYHDECIKTWLR-------DNENCCICREE 131 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~-~lpC~H~fh~~Ci~~wl~-------~~~~CP~Cr~~ 131 (134)
..|.+|...|..-..-. .-.||+.||..|...+.. ...+|-.|-..
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ------------------------------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 34999998886332111 224999999999976542 13357777443
No 148
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.47 E-value=13 Score=20.96 Aligned_cols=28 Identities=21% Similarity=0.558 Sum_probs=16.4
Q ss_pred CcccccCccccC--CCceEEecCCccccHHH
Q 045064 86 HKCAICKLEYER--GDRLITLPCGHKYHDEC 114 (134)
Q Consensus 86 ~~C~IC~~~~~~--~~~~~~lpC~H~fh~~C 114 (134)
..|+.|-..+.. .... ...-+..||..|
T Consensus 6 ~~C~~C~~~I~~~g~~~~-~~a~~~~wH~~C 35 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKF-ICFQDSQWHSEC 35 (76)
T ss_dssp CCCTTTCCCCCTTTTCCE-EEETTEEEEGGG
T ss_pred CCCccCCCcccCCCCcee-EEECCcccCccc
Confidence 358888777664 2222 223566777766
No 149
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=53.93 E-value=7.7 Score=23.33 Aligned_cols=32 Identities=16% Similarity=0.531 Sum_probs=21.5
Q ss_pred CcccccCccccCCCceEEe-cCCccccHHHHHH
Q 045064 86 HKCAICKLEYERGDRLITL-PCGHKYHDECIKT 117 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~ 117 (134)
..|.+|...|..-..-... .||.+||..|...
T Consensus 10 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3599999988744222222 3899999888654
No 150
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=53.63 E-value=4.1 Score=20.24 Aligned_cols=8 Identities=25% Similarity=0.621 Sum_probs=4.3
Q ss_pred CcccCCCc
Q 045064 124 NCCICREE 131 (134)
Q Consensus 124 ~CP~Cr~~ 131 (134)
.||+|++.
T Consensus 7 iCP~C~~~ 14 (34)
T 3mjh_B 7 ICPQCMKS 14 (34)
T ss_dssp ECTTTCCE
T ss_pred CCcHHHHH
Confidence 36666544
No 151
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.97 E-value=6.7 Score=22.81 Aligned_cols=37 Identities=30% Similarity=0.649 Sum_probs=23.1
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
..|..|-..+...+.+. .-+..||..| ..|-.|+..|
T Consensus 16 ~~C~~C~~~I~~~e~v~--a~~~~wH~~C--------F~C~~C~~~L 52 (82)
T 2co8_A 16 DLCALCGEHLYVLERLC--VNGHFFHRSC--------FRCHTCEATL 52 (82)
T ss_dssp CBCSSSCCBCCTTTBCC--BTTBCCBTTT--------CBCSSSCCBC
T ss_pred CCCcccCCCcccceEEE--ECCCeeCCCc--------CEEcCCCCCc
Confidence 45999988776544443 3567788777 3366665543
No 152
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.06 E-value=8.1 Score=22.87 Aligned_cols=31 Identities=16% Similarity=0.514 Sum_probs=21.5
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHH
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKT 117 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~ 117 (134)
.|.+|...|..-..--.. .||.+||..|...
T Consensus 16 ~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 16 NCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp SCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred cCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 599999988643222222 3999999999654
No 153
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.95 E-value=4.9 Score=23.09 Aligned_cols=43 Identities=28% Similarity=0.585 Sum_probs=28.0
Q ss_pred cccccCccccCCCceEEe-cCCccccHHHHHHHh----hCCCCcccCCC
Q 045064 87 KCAICKLEYERGDRLITL-PCGHKYHDECIKTWL----RDNENCCICRE 130 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl----~~~~~CP~Cr~ 130 (134)
.| ||......+...+.. .|...||..|+.--. .....||.|+.
T Consensus 18 ~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~ 65 (72)
T 1wee_A 18 DC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIE 65 (72)
T ss_dssp CC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHH
T ss_pred Ee-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccC
Confidence 38 798776554434443 499999999987432 12346998854
No 154
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=51.49 E-value=16 Score=22.88 Aligned_cols=45 Identities=16% Similarity=0.369 Sum_probs=21.4
Q ss_pred ccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
|..|...+..........=+..||..|..+.+.....|..|...|
T Consensus 32 C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 32 CDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRI 76 (131)
T ss_dssp CTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEE
T ss_pred cCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCcc
Confidence 666655554211111122445566666665443323566666544
No 155
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=51.15 E-value=4.8 Score=26.33 Aligned_cols=34 Identities=12% Similarity=0.371 Sum_probs=23.6
Q ss_pred CCCcccccCcccc-C-CCceEEecCCccccHHHHHH
Q 045064 84 PSHKCAICKLEYE-R-GDRLITLPCGHKYHDECIKT 117 (134)
Q Consensus 84 ~~~~C~IC~~~~~-~-~~~~~~lpC~H~fh~~Ci~~ 117 (134)
....|.+|...|. . +.......|.|.+|..|-..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEE
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCc
Confidence 4456999999984 2 22333335999999999764
No 156
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.01 E-value=9.8 Score=21.52 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=5.7
Q ss_pred CccccHHHHHHH
Q 045064 107 GHKYHDECIKTW 118 (134)
Q Consensus 107 ~H~fh~~Ci~~w 118 (134)
+..||..|....
T Consensus 52 ~~~yC~~C~~~~ 63 (73)
T 1wig_A 52 SSIWHPACRQAA 63 (73)
T ss_dssp TEEECTTHHHHT
T ss_pred CEEEChHHChHh
Confidence 344555555443
No 157
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=50.31 E-value=5 Score=19.01 Aligned_cols=9 Identities=22% Similarity=0.615 Sum_probs=5.2
Q ss_pred CcccCCCcc
Q 045064 124 NCCICREEV 132 (134)
Q Consensus 124 ~CP~Cr~~v 132 (134)
.||+|+..+
T Consensus 5 ~CpvCk~q~ 13 (28)
T 2jvx_A 5 CCPKCQYQA 13 (28)
T ss_dssp ECTTSSCEE
T ss_pred cCccccccC
Confidence 467766543
No 158
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=49.46 E-value=13 Score=21.69 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=27.2
Q ss_pred CcccccCccccCCCceEEe--cCCccccHHHHHHHhh---------CCCCcccCCC
Q 045064 86 HKCAICKLEYERGDRLITL--PCGHKYHDECIKTWLR---------DNENCCICRE 130 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~wl~---------~~~~CP~Cr~ 130 (134)
..| ||......+..+..= .|...||..|+.---. ....||.|+.
T Consensus 17 ~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~ 71 (78)
T 1wew_A 17 VRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRL 71 (78)
T ss_dssp CCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHH
T ss_pred EEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCc
Confidence 348 798774443222222 4999999999963221 2446999854
No 159
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.32 E-value=11 Score=20.96 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=4.9
Q ss_pred cccccCcccc
Q 045064 87 KCAICKLEYE 96 (134)
Q Consensus 87 ~C~IC~~~~~ 96 (134)
.|..|-..+.
T Consensus 7 ~C~~C~~~I~ 16 (70)
T 2d8x_A 7 GCHQCGEFII 16 (70)
T ss_dssp BCSSSCCBCC
T ss_pred cCccCCCEec
Confidence 3555555444
No 160
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.27 E-value=10 Score=21.85 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=12.6
Q ss_pred CcccccCccccCCCceEEecCCccccHHH
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
..|..|-..+.. ..+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~~H~~C 41 (79)
T 2cor_A 16 YICQKCHAIIDE-QPL--IFKNDPYHPDH 41 (79)
T ss_dssp CBCTTTCCBCCS-CCC--CCSSSCCCTTT
T ss_pred CCCccCCCEecc-eEE--EECcceeCCCC
Confidence 346666665552 111 12455566554
No 161
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.18 E-value=9.7 Score=22.48 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=12.6
Q ss_pred cccccCccccCCCceEEecCCccccHHH
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
.|..|-..+...+.+ ..-+..||..|
T Consensus 17 ~C~~C~~~I~~~~~v--~a~~~~~H~~C 42 (91)
T 2d8y_A 17 TCVECQKTVYPMERL--LANQQVFHISC 42 (91)
T ss_dssp BCTTTCCBCCTTSEE--ECSSSEEETTT
T ss_pred cCccCCCccCCceeE--EECCCEECCCC
Confidence 466666655543322 23444555544
No 162
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.16 E-value=14 Score=21.16 Aligned_cols=27 Identities=30% Similarity=0.605 Sum_probs=14.5
Q ss_pred cccccCccccCCCceEEecCCccccHHH
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
.|..|-..+...+.++. .-+..||..|
T Consensus 17 ~C~~C~~~I~~~~~~~~-a~~~~~H~~C 43 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVE-YKGTVWHKDC 43 (82)
T ss_dssp BCSSSCCBCCSSSCEEE-CSSCEEETTT
T ss_pred cCccCCcccccCceEEE-ECcccccccc
Confidence 47777666654433322 2455666655
No 163
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.06 E-value=11 Score=22.13 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=14.1
Q ss_pred cccccCccccCCCceEEecCCccccHHH
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
.|..|-..+... . ...-+..||..|
T Consensus 27 ~C~~C~~~I~~~--~-~~a~~~~~H~~C 51 (89)
T 1x64_A 27 LCDKCGSGIVGA--V-VKARDKYRHPEC 51 (89)
T ss_dssp BCTTTCCBCCSC--C-EESSSCEECTTT
T ss_pred CcccCCCEeccc--E-EEECCceECccC
Confidence 477777666532 1 223556677665
No 164
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=46.83 E-value=18 Score=22.58 Aligned_cols=46 Identities=7% Similarity=-0.034 Sum_probs=28.6
Q ss_pred ccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
|..|...+..........=+..||..|..+.+.....|..|...|.
T Consensus 35 C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 35 CSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGS 80 (122)
T ss_dssp CSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSC
T ss_pred cCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcC
Confidence 7778777652101111235667888888887655457888877653
No 165
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.63 E-value=16 Score=20.92 Aligned_cols=26 Identities=27% Similarity=0.667 Sum_probs=15.3
Q ss_pred CcccccCccccCCCceEEecCCccccHHH
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
..|+.|-..+.. ..+ ..-+..||..|
T Consensus 16 ~~C~~C~~~I~~-~~v--~a~~~~wH~~C 41 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVV--SALGKTYHPDC 41 (81)
T ss_dssp CBCTTTCCBCCS-CCE--EETTEEECTTT
T ss_pred CcCccccCEecc-ceE--EECCceeCccC
Confidence 358888777662 222 23566777666
No 166
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=44.45 E-value=15 Score=23.20 Aligned_cols=39 Identities=21% Similarity=0.482 Sum_probs=25.8
Q ss_pred CCCcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 84 PSHKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
....|..|-..+.....+ ..-+..||..| ..|-.|+..|
T Consensus 60 ~~~~C~~C~~~I~~~~~v--~a~~~~wH~~C--------F~C~~C~~~L 98 (123)
T 2l4z_A 60 SWKRCAGCGGKIADRFLL--YAMDSYWHSRC--------LKCSSCQAQL 98 (123)
T ss_dssp SCSBBSSSSSBCCSSSEE--EETTEEEETTT--------SBCTTTCCBG
T ss_pred cCCcCcCCCCCcCCcEEE--EeCCcEEcccc--------cCcCcCCCcc
Confidence 345699998887744222 23677888877 4477777665
No 167
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=44.40 E-value=11 Score=23.58 Aligned_cols=31 Identities=29% Similarity=0.627 Sum_probs=13.3
Q ss_pred ccccCccccCCCceEEecCCccccHHHHHHHh
Q 045064 88 CAICKLEYERGDRLITLPCGHKYHDECIKTWL 119 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl 119 (134)
|..|...+..+.... ..=+..||..|..+.+
T Consensus 39 C~~C~~~L~~g~~f~-~~~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 39 CAACQKHFSVGDRYL-LINSDIVCEQDIYEWT 69 (123)
T ss_dssp CTTTCCBCCTTCEEE-ECSSSEEEGGGHHHHH
T ss_pred cccCCCCCCCCCcEE-eeCCEEEcHHHhHHHh
Confidence 555555543322111 1234455555555444
No 168
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=42.42 E-value=6.5 Score=24.40 Aligned_cols=40 Identities=18% Similarity=0.463 Sum_probs=23.5
Q ss_pred CcccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 86 HKCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
..||+|..++.... ++.+|..|-.. +.....||-|.+++.
T Consensus 33 ~~CP~Cq~eL~~~g-------~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQDN-------GHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEEET-------TEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred ccCccCCCcceecC-------CEEECccccch-hhccccCcchhhHHH
Confidence 46999977765321 22234444332 234556999988774
No 169
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=41.22 E-value=2.9 Score=23.25 Aligned_cols=38 Identities=26% Similarity=0.628 Sum_probs=23.2
Q ss_pred ccccCccccCCCceEEe-c--CC-ccccHHHHHHHhhC----CCCcccCCC
Q 045064 88 CAICKLEYERGDRLITL-P--CG-HKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~l-p--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
| ||..... + ..+.- . |. ..||..|+. +.. ...||.|+.
T Consensus 12 C-~C~~~~~-g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 12 C-LCHQVSY-G-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp T-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred E-ECCCCCC-C-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 6 8876532 3 22222 3 55 699999998 432 335998864
No 170
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=40.81 E-value=8.8 Score=17.74 Aligned_cols=9 Identities=22% Similarity=0.981 Sum_probs=5.1
Q ss_pred CcccCCCcc
Q 045064 124 NCCICREEV 132 (134)
Q Consensus 124 ~CP~Cr~~v 132 (134)
.||+|.+-+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 467766543
No 171
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=40.67 E-value=23 Score=19.83 Aligned_cols=38 Identities=32% Similarity=0.655 Sum_probs=23.4
Q ss_pred CcccccCccccC---CCceEEecCCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 86 HKCAICKLEYER---GDRLITLPCGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 86 ~~C~IC~~~~~~---~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
..|+.|-..+.. ....+ ..-+..||..| ..|-.|+..|
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~-~a~~~~~H~~C--------F~C~~C~~~L 56 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVV-AYEGQSWHDYC--------FHCKKCSVNL 56 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEE-EETTEEEETTT--------CBCSSSCCBC
T ss_pred ccCcccCCcccCCCCCceeE-EECcceeCccc--------CEehhcCCCC
Confidence 458888887774 22222 23567788776 3477776654
No 172
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.68 E-value=14 Score=21.15 Aligned_cols=10 Identities=40% Similarity=0.750 Sum_probs=5.1
Q ss_pred cccccCcccc
Q 045064 87 KCAICKLEYE 96 (134)
Q Consensus 87 ~C~IC~~~~~ 96 (134)
.|+.|-..+.
T Consensus 17 ~C~~C~~~I~ 26 (81)
T 2dlo_A 17 KCATCSQPIL 26 (81)
T ss_dssp BCTTTCCBCC
T ss_pred ccccCCCeec
Confidence 3555555544
No 173
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=39.51 E-value=3.2 Score=23.16 Aligned_cols=38 Identities=26% Similarity=0.647 Sum_probs=22.8
Q ss_pred ccccCccccCCCceEEe-c--CC-ccccHHHHHHHhhC----CCCcccCCC
Q 045064 88 CAICKLEYERGDRLITL-P--CG-HKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~l-p--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
| ||..... + ..+.. . |. ..||..|+. +.. ...||.|+.
T Consensus 13 C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 13 C-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp T-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred E-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 6 8977532 2 22222 2 44 689999998 432 335998854
No 174
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.50 E-value=17 Score=20.60 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=5.1
Q ss_pred cccccCcccc
Q 045064 87 KCAICKLEYE 96 (134)
Q Consensus 87 ~C~IC~~~~~ 96 (134)
.|..|-..+.
T Consensus 17 ~C~~C~~~I~ 26 (80)
T 2cuq_A 17 RCARCSKTLT 26 (80)
T ss_dssp CCTTTCCCCC
T ss_pred cCCCCCCEec
Confidence 3555555543
No 175
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.45 E-value=18 Score=20.45 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=11.8
Q ss_pred cccccCccccCCCceEEecCCccccHHH
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
.|+.|-..+... .+ ..-+..||..|
T Consensus 17 ~C~~C~~~I~~~-~v--~a~~~~~H~~C 41 (80)
T 1x3h_A 17 KCGGCNRPVLEN-YL--SAMDTVWHPEC 41 (80)
T ss_dssp BCTTTCCBCCSS-CE--EETTEEECTTT
T ss_pred ccccCCCeecce-eE--EECCCeEecCc
Confidence 466666555431 11 22345555544
No 176
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=39.39 E-value=1.5 Score=24.69 Aligned_cols=45 Identities=22% Similarity=0.386 Sum_probs=26.1
Q ss_pred CcccccCccccCCCce-EEecCCccccHHHHHHHhhC-CC---CcccCCC
Q 045064 86 HKCAICKLEYERGDRL-ITLPCGHKYHDECIKTWLRD-NE---NCCICRE 130 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~-~~lpC~H~fh~~Ci~~wl~~-~~---~CP~Cr~ 130 (134)
..|.||...-..+... ...-|.-.||..|-.+|-.+ ++ .|-+|++
T Consensus 10 ~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 10 PTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred chhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhh
Confidence 3599997754333222 22237778888887766533 22 3766654
No 177
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=38.95 E-value=16 Score=22.81 Aligned_cols=40 Identities=25% Similarity=0.523 Sum_probs=24.4
Q ss_pred CCCcccccCccccCCCceEEe---cCCccccHHHHHHHhhC----CCCcccCC
Q 045064 84 PSHKCAICKLEYERGDRLITL---PCGHKYHDECIKTWLRD----NENCCICR 129 (134)
Q Consensus 84 ~~~~C~IC~~~~~~~~~~~~l---pC~H~fh~~Ci~~wl~~----~~~CP~Cr 129 (134)
....|.+|... + .++.- .|...||..|+. |.. ...||-|.
T Consensus 14 ~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGB
T ss_pred CCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCC
Confidence 44459999732 2 33333 277899999997 443 23477553
No 178
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.89 E-value=11 Score=21.64 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=12.2
Q ss_pred cccccCccccCCCceEEecCCccccHHH
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
.|..|-..+...+.+ ..-+..||..|
T Consensus 9 ~C~~C~~~I~~~~~~--~a~~~~~H~~C 34 (81)
T 1a7i_A 9 KCGACGRTVYHAEEV--QCDGRSFHRCC 34 (81)
T ss_dssp BCSSSCCBCSSTTEE--EETTEEEESSS
T ss_pred cCcCcCccccCceeE--EeCCccccccc
Confidence 466666655433322 12344555444
No 179
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=38.84 E-value=11 Score=22.59 Aligned_cols=33 Identities=21% Similarity=0.498 Sum_probs=20.2
Q ss_pred CCcccccCccccCCCceEEe--cCCccccHHHHHHH
Q 045064 85 SHKCAICKLEYERGDRLITL--PCGHKYHDECIKTW 118 (134)
Q Consensus 85 ~~~C~IC~~~~~~~~~~~~l--pC~H~fh~~Ci~~w 118 (134)
..+|.||... ..+..+... .|.-.||..|..+-
T Consensus 17 ~l~C~iC~~~-~~GAciqC~~~~C~~~fHv~CA~~a 51 (87)
T 2lq6_A 17 KLTCYLCKQK-GVGASIQCHKANCYTAFHVTCAQKA 51 (87)
T ss_dssp CCCBTTTTBC-CSSCEEECSCTTTCCEEEHHHHHHH
T ss_pred cCCCcCCCCC-CCcEeEecCCCCCCCcCcHHHHHHC
Confidence 3459999543 112222221 28899999998874
No 180
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.77 E-value=14 Score=21.15 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=5.4
Q ss_pred CccccHHHHHHH
Q 045064 107 GHKYHDECIKTW 118 (134)
Q Consensus 107 ~H~fh~~Ci~~w 118 (134)
+..||..|..+.
T Consensus 63 ~~~~C~~c~~~~ 74 (81)
T 1x6a_A 63 ATLYCGKCHNEV 74 (81)
T ss_dssp SCEEEHHHHHHH
T ss_pred CEEECHHHHHHH
Confidence 344444444443
No 181
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=38.70 E-value=19 Score=20.66 Aligned_cols=42 Identities=24% Similarity=0.598 Sum_probs=26.6
Q ss_pred cccCccccCCCceEEe-cCCccccHHHHHHHhh-----CCCCcccCCC
Q 045064 89 AICKLEYERGDRLITL-PCGHKYHDECIKTWLR-----DNENCCICRE 130 (134)
Q Consensus 89 ~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~-----~~~~CP~Cr~ 130 (134)
-||...+......+.. .|.-.||..|+.---. ....||.|+.
T Consensus 13 CiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~ 60 (75)
T 3kqi_A 13 CVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK 60 (75)
T ss_dssp TTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHH
T ss_pred EECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcc
Confidence 3887766543344443 4999999999963321 2346998853
No 182
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=38.04 E-value=39 Score=22.70 Aligned_cols=29 Identities=21% Similarity=0.541 Sum_probs=20.5
Q ss_pred ccccCccccCCCceEEe---cCCccccHHHHHHHhh
Q 045064 88 CAICKLEYERGDRLITL---PCGHKYHDECIKTWLR 120 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~l---pC~H~fh~~Ci~~wl~ 120 (134)
|.||-+. ..++.. .|...||..||..++.
T Consensus 82 C~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 82 CTICCGG----REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp CTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred eeEecCC----CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 8888543 333333 3889999999999983
No 183
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=37.52 E-value=6.6 Score=20.99 Aligned_cols=21 Identities=19% Similarity=0.687 Sum_probs=14.4
Q ss_pred CCCHHHHhhCCCCcccccCcc
Q 045064 74 GLSERKISRLPSHKCAICKLE 94 (134)
Q Consensus 74 ~~~~~~~~~~~~~~C~IC~~~ 94 (134)
..+.+....+|..+|++|--.
T Consensus 12 ~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 12 TFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp TCCCCCSCCCSSSCCTTTCCS
T ss_pred CccHHHHhhCCCcccCccCcE
Confidence 345556667788889999544
No 184
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=37.34 E-value=24 Score=26.51 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=26.5
Q ss_pred ccccCccccCCCceEEec-CCccccHHHHHHHhhCCCCcccCC
Q 045064 88 CAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDNENCCICR 129 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~~CP~Cr 129 (134)
|+.=+..+-.+...+..| ||-.||... ....|++|.
T Consensus 265 Ca~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~ 301 (320)
T 3mkr_B 265 CAASYRPIYRGKPVEKCPLSGACYSPEF------KGQICKVTT 301 (320)
T ss_dssp BTTTCCBCCTTSCCEECTTTCCEECGGG------TTSBCTTTS
T ss_pred ecCCCccccCCCCCccCCCCCCeechhh------CCCCCCCCc
Confidence 666666555567777888 999999743 567799995
No 185
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=37.33 E-value=30 Score=20.49 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=24.5
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
+|..|...+...... ..=+..||..|..+. ....|..|...|.
T Consensus 35 ~C~~C~~~L~~~~~~--~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 77 (101)
T 2cup_A 35 RCAKCLHPLANETFV--AKDNKILCNKCTTRE--DSPKCKGCFKAIV 77 (101)
T ss_dssp CCSSSCCCTTSSCCE--EETTEEECHHHHTTC--CCCBCSSSCCBCC
T ss_pred cccccCCCCCcCeeE--CcCCEEEChhHhhhh--cCCccccCCCccc
Confidence 377776666433221 224566777775432 3457888877664
No 186
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.59 E-value=3.3 Score=30.99 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=29.0
Q ss_pred CCCCcccccCccccCCCceEEe---cC--CccccHHHHHHHhhCCCCcccCCC
Q 045064 83 LPSHKCAICKLEYERGDRLITL---PC--GHKYHDECIKTWLRDNENCCICRE 130 (134)
Q Consensus 83 ~~~~~C~IC~~~~~~~~~~~~l---pC--~H~fh~~Ci~~wl~~~~~CP~Cr~ 130 (134)
+....||+|-...... ++.. .- .+.+|..|-..|-.....||.|..
T Consensus 180 ~~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~ 230 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEE 230 (309)
T ss_dssp TTCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCC
T ss_pred ccCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCC
Confidence 4556699996654321 1110 11 256677788888777888999965
No 187
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=36.41 E-value=16 Score=24.42 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=29.1
Q ss_pred CCCcccccCcccc--CCCceEEecCCccccHHHHHHHhhCC--CCcccCCC
Q 045064 84 PSHKCAICKLEYE--RGDRLITLPCGHKYHDECIKTWLRDN--ENCCICRE 130 (134)
Q Consensus 84 ~~~~C~IC~~~~~--~~~~~~~lpC~H~fh~~Ci~~wl~~~--~~CP~Cr~ 130 (134)
....|.+|...|. .+.......|+|.+|..|-. |.... ..|-+|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSSSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCCCCcEeeHHHHH
Confidence 3456999999864 33333444599999999983 33222 23766643
No 188
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=36.40 E-value=10 Score=23.48 Aligned_cols=6 Identities=33% Similarity=1.242 Sum_probs=3.0
Q ss_pred cccCCC
Q 045064 125 CCICRE 130 (134)
Q Consensus 125 CP~Cr~ 130 (134)
||+|.+
T Consensus 50 CPvCgs 55 (112)
T 1l8d_A 50 CPVCGR 55 (112)
T ss_dssp CTTTCC
T ss_pred CCCCCC
Confidence 555544
No 189
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=35.48 E-value=4.1 Score=22.90 Aligned_cols=38 Identities=29% Similarity=0.657 Sum_probs=23.0
Q ss_pred ccccCccccCCCceEEe-c--CC-ccccHHHHHHHhhC----CCCcccCCC
Q 045064 88 CAICKLEYERGDRLITL-P--CG-HKYHDECIKTWLRD----NENCCICRE 130 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~l-p--C~-H~fh~~Ci~~wl~~----~~~CP~Cr~ 130 (134)
| +|..... + ..+.- . |. ..||..|+. +.. ...||.|+.
T Consensus 14 C-~C~~~~~-g-~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 14 C-LCNQVSY-G-EMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp T-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred E-ECCCCCC-C-CeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 6 8977532 3 22222 2 44 799999998 322 345998864
No 190
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=34.34 E-value=35 Score=26.31 Aligned_cols=25 Identities=28% Similarity=0.676 Sum_probs=19.4
Q ss_pred cCCccccHHHHHHHhh----------CCCCcccCC
Q 045064 105 PCGHKYHDECIKTWLR----------DNENCCICR 129 (134)
Q Consensus 105 pC~H~fh~~Ci~~wl~----------~~~~CP~Cr 129 (134)
.|...||..||..++. ....|=+|.
T Consensus 112 ~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~ 146 (386)
T 2pv0_B 112 DCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCL 146 (386)
T ss_dssp TCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTS
T ss_pred CCCcchHHHHHHHhcChhHHHHhhccCCceEEEcC
Confidence 4889999999999982 234687775
No 191
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=34.05 E-value=21 Score=24.05 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=11.8
Q ss_pred cCCccccHHHHHHHhhCCCCcccCCCc
Q 045064 105 PCGHKYHDECIKTWLRDNENCCICREE 131 (134)
Q Consensus 105 pC~H~fh~~Ci~~wl~~~~~CP~Cr~~ 131 (134)
.|||++-. .....||+|..+
T Consensus 143 ~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 143 ICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TTCCEEES-------CCCSBCTTTCCB
T ss_pred CCCCeeCC-------CCCCCCCCCCCC
Confidence 36766541 233479999753
No 192
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=33.73 E-value=21 Score=24.05 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=11.7
Q ss_pred CccccHHHHHHHhhCCCCcccCCCcc
Q 045064 107 GHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 107 ~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
+..||..|..+.+.....|..|...|
T Consensus 54 g~~yC~~cy~~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 54 GMILCRNDYIRLFGNSGACSACGQSI 79 (188)
T ss_dssp TEEECHHHHHHHHSCCEECTTTCCEE
T ss_pred CccccccccccccccCCccccCCCcc
Confidence 34455555544432212455555443
No 193
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.62 E-value=26 Score=19.92 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=13.8
Q ss_pred cccccCccccCCCceEEecCCccccHHH
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDEC 114 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~C 114 (134)
.|..|-..+.....++. .-+..||..|
T Consensus 17 ~C~~C~~~I~~~~~~~~-a~~~~~H~~C 43 (82)
T 2ehe_A 17 TCAECQQLIGHDSRELF-YEDRHFHEGC 43 (82)
T ss_dssp BCTTTCCBCCSSCCBCC-CSSCCCBTTT
T ss_pred cCccCCCccccCcEEEE-eCCccccccC
Confidence 47777766653222211 2355666655
No 194
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=33.45 E-value=26 Score=26.41 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=25.7
Q ss_pred ccccCccccCCCceEEec-CCccccHHHHHHHhhCCCCcccCC
Q 045064 88 CAICKLEYERGDRLITLP-CGHKYHDECIKTWLRDNENCCICR 129 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~lp-C~H~fh~~Ci~~wl~~~~~CP~Cr 129 (134)
|+.=+..+-.+...+..| ||-.||... ....|++|.
T Consensus 274 Ca~s~tPIY~g~~~v~Cp~cgA~y~~~~------kG~lC~vC~ 310 (325)
T 3mv2_A 274 CAATYKPIYEDTPSVSDPLTGSKYVITE------KDKIDRIAM 310 (325)
T ss_dssp CTTTCCEEESSSCEEECTTTCCEEEGGG------TTSBCSSSS
T ss_pred ecCCcccccCCCCCccCCCCCCeechhh------CCCCCCCCc
Confidence 555555544566777778 999999743 567799995
No 195
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=33.11 E-value=19 Score=19.73 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=13.9
Q ss_pred CcccccCccccCCCceEEec---CCccc
Q 045064 86 HKCAICKLEYERGDRLITLP---CGHKY 110 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lp---C~H~f 110 (134)
..|++|...+.........+ |++.|
T Consensus 11 L~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 35999988765433222222 65554
No 196
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=31.54 E-value=3.1 Score=24.85 Aligned_cols=31 Identities=26% Similarity=0.724 Sum_probs=19.9
Q ss_pred ccccCccccC--CCceEEec-CCccccHHHHHHH
Q 045064 88 CAICKLEYER--GDRLITLP-CGHKYHDECIKTW 118 (134)
Q Consensus 88 C~IC~~~~~~--~~~~~~lp-C~H~fh~~Ci~~w 118 (134)
||-|-..+.. ....+..| |++.||..|-.+|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 6655443321 12235566 9999999998888
No 197
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=30.18 E-value=3.3 Score=24.47 Aligned_cols=20 Identities=25% Similarity=0.810 Sum_probs=15.4
Q ss_pred cCCccccHHHHHHHhhCCCCcc
Q 045064 105 PCGHKYHDECIKTWLRDNENCC 126 (134)
Q Consensus 105 pC~H~fh~~Ci~~wl~~~~~CP 126 (134)
.|++.||..|...|-. ..|.
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C~ 74 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GECS 74 (80)
T ss_dssp CCSCCEETTTTEECCS--SCSS
T ss_pred CCCCeeccccCccccC--Cccc
Confidence 4899999999998843 4553
No 198
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=29.58 E-value=52 Score=18.42 Aligned_cols=34 Identities=21% Similarity=0.532 Sum_probs=26.7
Q ss_pred CcccccCccccCCCceEEec-CCccccH-HHHHHHh
Q 045064 86 HKCAICKLEYERGDRLITLP-CGHKYHD-ECIKTWL 119 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~lp-C~H~fh~-~Ci~~wl 119 (134)
..|.-|...+..+.....-. ..|.||. .||..+-
T Consensus 21 v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~fs 56 (62)
T 2das_A 21 ITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFS 56 (62)
T ss_dssp CBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHHC
T ss_pred cChhhccchhhcCceeeeecCchhheechHHHcccC
Confidence 35999999999887666654 7889987 6888764
No 199
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=29.41 E-value=14 Score=24.43 Aligned_cols=21 Identities=29% Similarity=0.631 Sum_probs=12.2
Q ss_pred CCccccHHHHHHHhhCCCCcccCCCcc
Q 045064 106 CGHKYHDECIKTWLRDNENCCICREEV 132 (134)
Q Consensus 106 C~H~fh~~Ci~~wl~~~~~CP~Cr~~v 132 (134)
|||.|-.. .....||.|..++
T Consensus 138 Cg~~~~~~------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 138 CGRKFSTL------PPGGVCPDCGSKV 158 (165)
T ss_dssp SCCEESSC------CGGGBCTTTCCBE
T ss_pred CCCcccCC------CCCCcCCCCCCcc
Confidence 77766532 1223688887653
No 200
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.68 E-value=19 Score=21.48 Aligned_cols=12 Identities=33% Similarity=0.941 Sum_probs=7.6
Q ss_pred cccccCccccCC
Q 045064 87 KCAICKLEYERG 98 (134)
Q Consensus 87 ~C~IC~~~~~~~ 98 (134)
.|+.|...+...
T Consensus 4 ~CP~C~~~l~~~ 15 (81)
T 2jrp_A 4 TCPVCHHALERN 15 (81)
T ss_dssp CCSSSCSCCEEC
T ss_pred CCCCCCCccccC
Confidence 477787665543
No 201
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=28.45 E-value=36 Score=20.22 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=25.5
Q ss_pred CcccccCccccCCCc---eEEecCCccccHHHHHHHhhCCCCccc
Q 045064 86 HKCAICKLEYERGDR---LITLPCGHKYHDECIKTWLRDNENCCI 127 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~---~~~lpC~H~fh~~Ci~~wl~~~~~CP~ 127 (134)
.+|.+|.+....... .+-+=|+-.+|..|.... ...|++
T Consensus 39 s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~---~~eC~l 80 (84)
T 1r79_A 39 AKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL---LTKCSG 80 (84)
T ss_dssp CBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC---CSCBCC
T ss_pred CEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc---cCcCCC
Confidence 369999777543321 122229999999998875 455654
No 202
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=28.17 E-value=25 Score=16.50 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=7.9
Q ss_pred CCCcccCCCcc
Q 045064 122 NENCCICREEV 132 (134)
Q Consensus 122 ~~~CP~Cr~~v 132 (134)
+..||.|.+.|
T Consensus 3 ~~~C~~C~k~V 13 (31)
T 1zfo_A 3 NPNCARCGKIV 13 (31)
T ss_dssp CCBCSSSCSBC
T ss_pred CCcCCccCCEE
Confidence 45688887765
No 203
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=27.32 E-value=2.6 Score=19.01 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=8.0
Q ss_pred cccHHHHHHHhh
Q 045064 109 KYHDECIKTWLR 120 (134)
Q Consensus 109 ~fh~~Ci~~wl~ 120 (134)
.||..|-.+|+.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 467777777763
No 204
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.99 E-value=1e+02 Score=18.88 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=23.7
Q ss_pred cccccCccccCCCceEEecCCccccHHHHHHHhhCCCCcccCCCccc
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYHDECIKTWLRDNENCCICREEVV 133 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh~~Ci~~wl~~~~~CP~Cr~~v~ 133 (134)
.|..|...+... .....=+..||..|..+. ....|..|..+|.
T Consensus 32 ~C~~C~~~L~~~--~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 32 CCFDCDSILAGE--IYVMVNDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp BCTTTCCBCTTS--EEEEETTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CcCCCCCCCCcC--EEEeECCEEechHHhCcC--cCccCcccCCcCC
Confidence 366666665432 111234566777776553 3456777776653
No 205
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.90 E-value=8.9 Score=21.33 Aligned_cols=36 Identities=17% Similarity=0.548 Sum_probs=25.4
Q ss_pred CcccccCccccCCCceEEe--c---CCccccHHHHHHHhhC
Q 045064 86 HKCAICKLEYERGDRLITL--P---CGHKYHDECIKTWLRD 121 (134)
Q Consensus 86 ~~C~IC~~~~~~~~~~~~l--p---C~H~fh~~Ci~~wl~~ 121 (134)
..||-|...++.......+ . |++.|+-.|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 3599888887765533222 2 7899999999888654
No 206
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.57 E-value=34 Score=18.56 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=14.5
Q ss_pred cccccCccccCCCceEEecCCcccc--HHH
Q 045064 87 KCAICKLEYERGDRLITLPCGHKYH--DEC 114 (134)
Q Consensus 87 ~C~IC~~~~~~~~~~~~lpC~H~fh--~~C 114 (134)
.|+.|-..+...+..+ ..-+..|| ..|
T Consensus 4 ~C~~C~~~I~~~~~~v-~a~~~~wH~~~~C 32 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRV-TYNNFSWHASTEC 32 (65)
T ss_dssp ECTTTSSEECTTSCEE-EETTEEEETTTTT
T ss_pred CCcCCCCeeccCceEE-EECCCccCCCCCC
Confidence 4777766666432222 22466677 655
No 207
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=24.86 E-value=33 Score=21.47 Aligned_cols=21 Identities=19% Similarity=0.540 Sum_probs=12.4
Q ss_pred cCCccccHHHHHHHhhCCC-CcccCCCc
Q 045064 105 PCGHKYHDECIKTWLRDNE-NCCICREE 131 (134)
Q Consensus 105 pC~H~fh~~Ci~~wl~~~~-~CP~Cr~~ 131 (134)
.|||.|-.. .... .||.|..+
T Consensus 78 ~CG~~~e~~------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 78 DCSHVFKPN------ALDYGVCEKCHSK 99 (119)
T ss_dssp SSSCEECSC------CSTTCCCSSSSSC
T ss_pred CCCCEEeCC------CCCCCcCccccCC
Confidence 366666541 2345 68888654
No 208
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.63 E-value=39 Score=26.80 Aligned_cols=41 Identities=24% Similarity=0.627 Sum_probs=26.9
Q ss_pred ccccCccccCCCceEEe-cCCccccHHHHHHHhh-----CCCCcccCC
Q 045064 88 CAICKLEYERGDRLITL-PCGHKYHDECIKTWLR-----DNENCCICR 129 (134)
Q Consensus 88 C~IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~-----~~~~CP~Cr 129 (134)
| +|...+......+.. .|.-.||..|+.---. ....||.|+
T Consensus 40 C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~ 86 (488)
T 3kv5_D 40 C-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCA 86 (488)
T ss_dssp T-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHH
T ss_pred E-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCc
Confidence 5 898776544444444 4999999999953222 124699995
No 209
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.51 E-value=69 Score=19.49 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=16.7
Q ss_pred cccccCccccC-CCceEEecCCccccHHHHHHHhh
Q 045064 87 KCAICKLEYER-GDRLITLPCGHKYHDECIKTWLR 120 (134)
Q Consensus 87 ~C~IC~~~~~~-~~~~~~lpC~H~fh~~Ci~~wl~ 120 (134)
+|..|...+.. +... ...=+..||..|..+.+.
T Consensus 32 ~C~~C~~~L~~~g~~~-~~~~g~~yC~~~y~~~f~ 65 (114)
T 1j2o_A 32 SCDLCGCRLGEVGRRL-YYKLGRKLCRRDYLRLGG 65 (114)
T ss_dssp CCSSSCSCCCCSSSCC-CCBTTBCCCHHHHHHHHT
T ss_pred cccccCCchhcCCCee-EEECCeeechHHHHHHhC
Confidence 36666666543 1111 112355677777666554
No 210
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=21.84 E-value=41 Score=22.64 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=10.5
Q ss_pred CCccccHHHHHHHhhCCCCcccCC
Q 045064 106 CGHKYHDECIKTWLRDNENCCICR 129 (134)
Q Consensus 106 C~H~fh~~Ci~~wl~~~~~CP~Cr 129 (134)
=+..||..|..+.+ ...|..|.
T Consensus 161 ~g~~yC~~cy~~~f--~~kc~~C~ 182 (192)
T 1b8t_A 161 DGEIYCKGCYAKNF--GPKGFGFG 182 (192)
T ss_dssp TTEEEEHHHHHHHT--CCCCCCCC
T ss_pred CCEEeCHHHHHHhc--CCcCCCCC
Confidence 34455555555443 23454444
No 211
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=21.50 E-value=26 Score=18.51 Aligned_cols=40 Identities=25% Similarity=0.511 Sum_probs=24.2
Q ss_pred ccCccccCCCceEEe-cCCccccHHHHHHHhh---CCCCcccCCC
Q 045064 90 ICKLEYERGDRLITL-PCGHKYHDECIKTWLR---DNENCCICRE 130 (134)
Q Consensus 90 IC~~~~~~~~~~~~l-pC~H~fh~~Ci~~wl~---~~~~CP~Cr~ 130 (134)
||..... +...+.- .|+..||..|+.--.. ....||.|+.
T Consensus 8 ~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCT-TCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCC-CCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 6766544 3233333 4899999999864322 2346888864
No 212
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.53 E-value=30 Score=23.61 Aligned_cols=9 Identities=33% Similarity=0.704 Sum_probs=6.5
Q ss_pred CCcccCCCc
Q 045064 123 ENCCICREE 131 (134)
Q Consensus 123 ~~CP~Cr~~ 131 (134)
..||+|..+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 379999764
No 213
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=20.15 E-value=35 Score=23.59 Aligned_cols=9 Identities=44% Similarity=0.925 Sum_probs=6.9
Q ss_pred CCcccCCCc
Q 045064 123 ENCCICREE 131 (134)
Q Consensus 123 ~~CP~Cr~~ 131 (134)
..||+|..+
T Consensus 187 ~~CP~C~~~ 195 (202)
T 1yuz_A 187 EKCPICFRP 195 (202)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCCCC
Confidence 579999764
Done!