BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045069
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OU2|A Chain A, Dhpi-Sah Complex Structure
pdb|3OU6|A Chain A, Dhpi-Sam Complex
pdb|3OU6|B Chain B, Dhpi-Sam Complex
pdb|3OU6|C Chain C, Dhpi-Sam Complex
pdb|3OU6|D Chain D, Dhpi-Sam Complex
pdb|3OU7|A Chain A, Dhpi-Sam-Hep Complex
pdb|3OU7|B Chain B, Dhpi-Sam-Hep Complex
pdb|3OU7|C Chain C, Dhpi-Sam-Hep Complex
pdb|3OU7|D Chain D, Dhpi-Sam-Hep Complex
Length = 218
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 48 YALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKP 102
+ L+NV + LFD TP R W+++ A+ LAH +D F +R+ + P
Sbjct: 87 HGLDNVEFRQQDLFDWTPDRQ---WDAVFFAHWLAHVPDDRFEAFWESVRSAVAP 138
>pdb|1W3W|A Chain A, The 2.1 Angstroem Resolution Structure Of Annexin A8
Length = 327
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 360 GIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419
G + ET+ + +I+ L + Y+A E + KGL E +L +
Sbjct: 68 GKDLTETLKSELSGKFERLIVALMYPPYRYEAKELHDAM--KGLGTKEGVIIEILASRTK 125
Query: 420 GGLVNDGREIFTRMTEEYG------IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPV 473
L REI E+YG IQA T Y+ + + L G+ ++ SF V
Sbjct: 126 NQL----REIMKAYEEDYGSSLEEDIQADTSGYLERILVCLLQGSRDDVSSF-------V 174
Query: 474 DPAVS 478
DPA++
Sbjct: 175 DPALA 179
>pdb|1W45|A Chain A, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus.
pdb|1W45|B Chain B, The 2.5 Angstroem Structure Of The K16a Mutant Of Annexin
A8, Which Has An Intact N-Terminus
Length = 327
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 19/125 (15%)
Query: 360 GIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419
G + ET+ + +I+ L + Y+A E + KGL E +L +
Sbjct: 68 GKDLTETLKSELSGKFERLIVALMYPPYRYEAKELHDAM--KGLGTKEGVIIEILASRTK 125
Query: 420 GGLVNDGREIFTRMTEEYG------IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPV 473
L REI E+YG IQA T Y+ + + L G+ ++ SF V
Sbjct: 126 NQL----REIMKAYEEDYGSSLEEDIQADTSGYLERILVCLLQGSRDDVSSF-------V 174
Query: 474 DPAVS 478
DPA++
Sbjct: 175 DPALA 179
>pdb|2FJ0|A Chain A, Crystal Structure Of Juvenile Hormone Esterase From
Manduca Sexta, With Otfp Covalently Attached
Length = 551
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 107 YACITRACSEN--SDLPGLRFVHGGAIVSGLGRDSITSSA-LVTAYSKLSLIDEAIKVFD 163
YA A +N + LP L F+HGG G G + LV+ + + + V+
Sbjct: 100 YALPRDAADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYG 159
Query: 164 GVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLR----LGKTPDEYTLVGLISGLWEPS 219
+S L ++ + G + G D + L W+ R G PD+ TL+G +G
Sbjct: 160 FLS-----LNSTSVPG--NAGLRDM-VTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATH 211
Query: 220 LLSVGQGIHG 229
+LS+ + G
Sbjct: 212 ILSLSKAADG 221
>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With 1-Kestose
pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja Complex With Nystose
pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja
pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With Raffinose
Length = 634
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 529 MKLRDDIVDNGLRKEAGVSWVSGSSN 554
++ +++VDN L +E GVSWV G S+
Sbjct: 410 VQTVENVVDNELVREEGVSWVVGESD 435
>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus
pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
Length = 634
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 529 MKLRDDIVDNGLRKEAGVSWVSGSSN 554
++ +++VDN L +E GVSWV G S+
Sbjct: 410 VQTVENVVDNELVREEGVSWVVGESD 435
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 444 EHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503
E + ++L GNLE F+WSLP +C H++ N + + A F
Sbjct: 382 EQVACVCEVLQQGGNLERLGRFLWSLP------------ACDHLHKNESVLKAKAVVAFH 429
Query: 504 NDPRKGAYKVMLSNTYA 520
+ YK++ S+ ++
Sbjct: 430 RGNFRELYKILESHQFS 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,113,676
Number of Sequences: 62578
Number of extensions: 650479
Number of successful extensions: 1369
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1365
Number of HSP's gapped (non-prelim): 7
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)