BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045069
(554 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7V5|PP104_ARATH Putative pentatricopeptide repeat-containing protein At1g64310
OS=Arabidopsis thaliana GN=PCMP-E65 PE=3 SV=1
Length = 552
Score = 608 bits (1568), Expect = e-173, Method: Compositional matrix adjust.
Identities = 297/546 (54%), Positives = 385/546 (70%), Gaps = 1/546 (0%)
Query: 4 NLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDK 63
L ++ E ++ Q+ T++LH+ V K+ L RDP++AT+L R YALN+ L SAR LFD
Sbjct: 6 QLRLIIYEFTRKIQTRLNTQKLHSFVTKSKLARDPYFATQLARFYALNDDLISARKLFDV 65
Query: 64 TPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGL 123
P+RSVFLWNSIIRAYA AH+F SLF +LR+ +PDNFTYAC+ R SE+ D GL
Sbjct: 66 FPERSVFLWNSIIRAYAKAHQFTTVLSLFSQILRSDTRPDNFTYACLARGFSESFDTKGL 125
Query: 124 RFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC 183
R +HG AIVSGLG D I SA+V AYSK LI EA K+F + DPDL L N MI G+ C
Sbjct: 126 RCIHGIAIVSGLGFDQICGSAIVKAYSKAGLIVEASKLFCSIPDPDLALWNVMILGYGCC 185
Query: 184 GFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS 243
GFWDK + LF+ M G P+ YT+V L SGL +PSLL V +H FCLK + DS+ YV
Sbjct: 186 GFWDKGINLFNLMQHRGHQPNCYTMVALTSGLIDPSLLLVAWSVHAFCLKINLDSHSYVG 245
Query: 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKK 303
LV+MY+RC C+ SA VFNS+ PDLV S+LITGYS+ G++ +AL+ F +L M GKK
Sbjct: 246 CALVNMYSRCMCIASACSVFNSISEPDLVACSSLITGYSRCGNHKEALHLFAELRMSGKK 305
Query: 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQV 363
D VL+A VL + A+ ++ G +H YVI+ G EL + V SAL+DMYSKCG L + +
Sbjct: 306 PDCVLVAIVLGSCAELSDSVSGKEVHSYVIRLGLELDIKVCSALIDMYSKCGLLKCAMSL 365
Query: 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLV 423
F + E+NI+++NS+ILGLGLHGF AFE F +I+E GL PDE TFSALLC CCH GL+
Sbjct: 366 FAGIPEKNIVSFNSLILGLGLHGFASTAFEKFTEILEMGLIPDEITFSALLCTCCHSGLL 425
Query: 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLS 483
N G+EIF RM E+GI+ +TEHY+YMVKL+G+AG LEEA+ F+ SL KP+D + GALLS
Sbjct: 426 NKGQEIFERMKSEFGIEPQTEHYVYMVKLMGMAGKLEEAFEFVMSLQKPIDSGILGALLS 485
Query: 484 CCHIYGNSDLAEIVAHQLFEN-DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542
CC ++ N+ LAE+VA + +N + R+ YKVMLSN YA GRWD+V +LRD I ++ K
Sbjct: 486 CCEVHENTHLAEVVAENIHKNGEERRSVYKVMLSNVYARYGRWDEVERLRDGISESYGGK 545
Query: 543 EAGVSW 548
G+SW
Sbjct: 546 LPGISW 551
>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300
OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1
Length = 857
Score = 328 bits (840), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 175/542 (32%), Positives = 295/542 (54%), Gaps = 1/542 (0%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL + S + +LH LV + + + L+ +Y+ A LF +
Sbjct: 245 VLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRAD 304
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
WN +I Y + ++ + F ++ + + PD T++ + + S+ +L + +H
Sbjct: 305 TVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHC 364
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
+ + D +SAL+ AY K + A +F + D+V+ +MISG+ H G +
Sbjct: 365 YIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYID 424
Query: 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248
SL++F W++++ +P+E TLV ++ + L +G+ +HGF +K FD+ + ++
Sbjct: 425 SLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVID 484
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL 308
MYA+C MN AY +F L D+V+W+++IT +Q + A+ FR++ + G D V
Sbjct: 485 MYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVS 544
Query: 309 IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS 368
I++ L+A A + G IHG++I+H V S L+DMY+KCG L + VF+TM
Sbjct: 545 ISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK 604
Query: 369 ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNPDESTFSALLCACCHGGLVNDGR 427
E+NI+++NS+I G HG + F +++EK G+ PD+ TF ++ +CCH G V++G
Sbjct: 605 EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGV 664
Query: 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487
F MTE+YGIQ + EHY +V L G AG L EAY + S+P P D V G LL C +
Sbjct: 665 RFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRL 724
Query: 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
+ N +LAE+ + +L + DP Y V++SN +A W+ V K+R + + ++K G S
Sbjct: 725 HKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYS 784
Query: 548 WV 549
W+
Sbjct: 785 WI 786
Score = 180 bits (456), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/409 (26%), Positives = 206/409 (50%), Gaps = 2/409 (0%)
Query: 8 LVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQR 67
L+L+ + L + K++HA + S+ D + +++ +YA+ +F + R
Sbjct: 40 LLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLR 99
Query: 68 --SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRF 125
S+ WNSII ++ N A + + +L + PD T+ C+ +AC + G+ F
Sbjct: 100 RSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFKGIDF 159
Query: 126 VHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGF 185
+ G+ + +S+L+ AY + ID K+FD V D V+ N M++G+A CG
Sbjct: 160 LSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGA 219
Query: 186 WDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSV 245
D ++ F M +P+ T ++S L+ +G +HG + S D + +
Sbjct: 220 LDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNS 279
Query: 246 LVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD 305
L+SMY++C + A +F + D VTW+ +I+GY Q G ++L +F ++ G D
Sbjct: 280 LLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPD 339
Query: 306 PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFE 365
+ +S+L + +K N+ IH Y+++H L + ++SAL+D Y KC + + +F
Sbjct: 340 AITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFS 399
Query: 366 TMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALL 414
+ +++ + ++I G +G + E FR +++ ++P+E T ++L
Sbjct: 400 QCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSIL 448
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 306 PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFE 365
P ++ +L A + + G +H ++I + ++ MY+ CG ++F
Sbjct: 35 PRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFY 94
Query: 366 TMSER--NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417
+ R +I +NS+I +G QA F+ ++ G++PD STF L+ AC
Sbjct: 95 RLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC 148
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 312 bits (800), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 181/567 (31%), Positives = 304/567 (53%), Gaps = 35/567 (6%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNV--LPSARILFDKTPQRSVFLWNSI 75
SL + K+ H + + DP+ A+KL + AL++ L AR +FD+ P+ + F WN++
Sbjct: 42 SLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTL 101
Query: 76 IRAYALAHRFNDAKSLFKNLL-RTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSG 134
IRAYA + F +++ +Q P+ +T+ + +A +E S L + +HG A+ S
Sbjct: 102 IRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSA 161
Query: 135 LGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFD 194
+G D +++L+ Y +D A KVF + + D+V NSMI+GF G DK+L+LF
Sbjct: 162 VGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFK 221
Query: 195 WMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN 254
M T+VG++S + L G+ + + ++ + +++ ++ MY +C
Sbjct: 222 KMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCG 281
Query: 255 CMNSAYHVF-------------------------------NSLFHPDLVTWSALITGYSQ 283
+ A +F NS+ D+V W+ALI+ Y Q
Sbjct: 282 SIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQ 341
Query: 284 QGDYGKALYYFRKLNMQGK-KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVM 342
G +AL F +L +Q K + + + S L+A A+ + G IH Y+ +HG ++
Sbjct: 342 NGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFH 401
Query: 343 VSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKG 402
V+SAL+ MYSKCG L +VF ++ +R++ ++++I GL +HG +A + F + E
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEAN 461
Query: 403 LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEA 462
+ P+ TF+ + CAC H GLV++ +F +M YGI + +HY +V +LG +G LE+A
Sbjct: 462 VKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKA 521
Query: 463 YSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522
FI ++P P +V GALL C I+ N +LAE+ +L E +PR V+LSN YA+
Sbjct: 522 VKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKL 581
Query: 523 GRWDDVMKLRDDIVDNGLRKEAGVSWV 549
G+W++V +LR + GL+KE G S +
Sbjct: 582 GKWENVSELRKHMRVTGLKKEPGCSSI 608
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 1 MFFNLHFLVLELSKSHQ--SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSAR 58
M N LV LS Q +L + +H+ + K + + + L+ +Y+ L +R
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSR 420
Query: 59 ILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACS 115
+F+ +R VF+W+++I A+ N+A +F + +KP+ T+ + ACS
Sbjct: 421 EVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 477
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 185/550 (33%), Positives = 293/550 (53%), Gaps = 5/550 (0%)
Query: 3 FNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFD 62
+N +L L++ L KE+H L+ K+ D F T L +YA + AR +FD
Sbjct: 136 YNFTYL-LKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD 194
Query: 63 KTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPG 122
+ P+R + WN+I+ Y+ A + K++ LKP T + A S +
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254
Query: 123 LRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAH 182
+ +HG A+ SG S+ALV Y+K ++ A ++FDG+ + ++V NSMI +
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314
Query: 183 CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYV 242
+++ +F ML G P + +++G + + L G+ IH ++ D V
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSV 374
Query: 243 SSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK 302
+ L+SMY +C +++A +F L LV+W+A+I G++Q G AL YF ++ +
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV 434
Query: 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQ 362
K D SV+ A A+ + IHG V++ + +V V++ALVDMY+KCG + +
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARL 494
Query: 363 VFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGL 422
+F+ MSER++ T+N++I G G HGF A E F ++ + + P+ TF +++ AC H GL
Sbjct: 495 IFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGL 554
Query: 423 VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVS--GA 480
V G + F M E Y I+ +HY MV LLG AG L EA+ FI + PV PAV+ GA
Sbjct: 555 VEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQM--PVKPAVNVYGA 612
Query: 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540
+L C I+ N + AE A +LFE +P G Y V+L+N Y W+ V ++R ++ GL
Sbjct: 613 MLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGL 672
Query: 541 RKEAGVSWVS 550
RK G S V
Sbjct: 673 RKTPGCSMVE 682
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/399 (26%), Positives = 208/399 (52%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIR 77
SL +++ LV K L ++ F+ TKLV L+ + A +F+ + L++++++
Sbjct: 49 SLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLK 108
Query: 78 AYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGR 137
+A + A F + ++P + + + + C + ++L + +HG + SG
Sbjct: 109 GFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSL 168
Query: 138 DSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWML 197
D + L Y+K ++EA KVFD + + DLV N++++G++ G +L++ M
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMC 228
Query: 198 RLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMN 257
P T+V ++ + L+SVG+ IHG+ ++S FDS +S+ LV MYA+C +
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLE 288
Query: 258 SAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAA 317
+A +F+ + ++V+W+++I Y Q + +A+ F+K+ +G K V + L A A
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348
Query: 318 KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNS 377
++ G IH ++ G + +V V ++L+ MY KC + +F + R ++++N+
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNA 408
Query: 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416
+ILG +G A +F + + + PD T+ +++ A
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 170/322 (52%), Gaps = 1/322 (0%)
Query: 118 SDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMI 177
S L LR + +GL ++ + LV+ + + +DEA +VF+ + VL ++M+
Sbjct: 48 SSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTML 107
Query: 178 SGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFD 237
GFA DK+LQ F M P Y L+ + + L VG+ IHG +KS F
Sbjct: 108 KGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFS 167
Query: 238 SYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKL 297
+ + L +MYA+C +N A VF+ + DLV+W+ ++ GYSQ G AL + +
Sbjct: 168 LDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSM 227
Query: 298 NMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYL 357
+ K + I SVL A + + G IHGY ++ GF+ V +S+ALVDMY+KCG L
Sbjct: 228 CEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSL 287
Query: 358 GLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417
Q+F+ M ERN++++NS+I + +A F+ ++++G+ P + + L AC
Sbjct: 288 ETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHAC 347
Query: 418 CHGGLVNDGREIFTRMTEEYGI 439
G + GR I +++ E G+
Sbjct: 348 ADLGDLERGRFIH-KLSVELGL 368
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 180/543 (33%), Positives = 290/543 (53%), Gaps = 4/543 (0%)
Query: 12 LSKSHQSLSRT---KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
+SKS SL ++LH + K+ LV Y N + SAR +FD+ +R
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD 260
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
V WNSII Y S+F +L + ++ D T + C+++ + R VH
Sbjct: 261 VISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 320
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
+ + R+ + L+ YSK +D A VF +SD +V SMI+G+A G +
Sbjct: 321 IGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 380
Query: 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248
+++LF+ M G +PD YT+ +++ LL G+ +H + ++ +VS+ L+
Sbjct: 381 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 440
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KADPV 307
MYA+C M A VF+ + D+++W+ +I GYS+ +AL F L + + D
Sbjct: 441 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 500
Query: 308 LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETM 367
+A VL A A + G IHGY++++G+ V+++LVDMY+KCG L L +F+ +
Sbjct: 501 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 560
Query: 368 SERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGR 427
+ ++++++ +I G G+HGF +A F + + G+ DE +F +LL AC H GLV++G
Sbjct: 561 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 620
Query: 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487
F M E I+ EHY +V +L G+L +AY FI ++P P D + GALL C I
Sbjct: 621 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 680
Query: 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
+ + LAE VA ++FE +P Y V+++N YAE +W+ V +LR I GLRK G S
Sbjct: 681 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 740
Query: 548 WVS 550
W+
Sbjct: 741 WIE 743
Score = 213 bits (541), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 225/422 (53%), Gaps = 1/422 (0%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL+L +SL KE+ + + D +KL +Y L A +FD+
Sbjct: 100 VLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEK 159
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
WN ++ A + F+ + LFK ++ + ++ D++T++C++++ S + G +HG
Sbjct: 160 ALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 219
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
+ SG G + ++LV Y K +D A KVFD +++ D++ NS+I+G+ G +K
Sbjct: 220 FILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279
Query: 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248
L +F ML G D T+V + +G + L+S+G+ +H +K+ F D + L+
Sbjct: 280 GLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLD 339
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL 308
MY++C ++SA VF + +V+++++I GY+++G G+A+ F ++ +G D
Sbjct: 340 MYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYT 399
Query: 309 IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS 368
+ +VL A+ + G +H ++ ++ + VS+AL+DMY+KCG + VF M
Sbjct: 400 VTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMR 459
Query: 369 ERNIITYNSVILGLGLHGFTYQAFEFFRDII-EKGLNPDESTFSALLCACCHGGLVNDGR 427
++II++N++I G + + +A F ++ EK +PDE T + +L AC + GR
Sbjct: 460 VKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGR 519
Query: 428 EI 429
EI
Sbjct: 520 EI 521
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 127/280 (45%), Gaps = 16/280 (5%)
Query: 157 EAIKVFD-GVSDPDLVLCNSMISGFAHCGFWDKSLQLF----DWMLRLGKTPDEYTLVGL 211
++I FD V+D N+ + F G + +++L W + D TL +
Sbjct: 52 DSITTFDRSVTDA-----NTQLRRFCESGNLENAVKLLCVSGKWDI------DPRTLCSV 100
Query: 212 ISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDL 271
+ + L G+ + F + F + S L MY C + A VF+ +
Sbjct: 101 LQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKA 160
Query: 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGY 331
+ W+ L+ ++ GD+ ++ F+K+ G + D + V + + +V G +HG+
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGF 220
Query: 332 VIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQA 391
+++ GF V ++LV Y K + +VF+ M+ER++I++NS+I G +G +
Sbjct: 221 ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 280
Query: 392 FEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFT 431
F ++ G+ D +T ++ C L++ GR + +
Sbjct: 281 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHS 320
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL S + + +E+H + + D A LV +YA L A +LFD +
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 564
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL-PGLRF 125
+ W +I Y + +A +LF + + ++ D ++ + ACS + + G RF
Sbjct: 565 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 306 bits (785), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 192/605 (31%), Positives = 298/605 (49%), Gaps = 69/605 (11%)
Query: 14 KSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWN 73
KS S + +HA V K+ + F +L+ Y+ L R +FDK PQR+++ WN
Sbjct: 31 KSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWN 90
Query: 74 SIIRAYALAHRFNDAKSLFKNL-LRTQLK------------------------------P 102
S++ ++A SLF+++ R Q
Sbjct: 91 SVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVL 150
Query: 103 DNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVF 162
+ +++A + ACS +D+ VH S D SALV YSK +++A +VF
Sbjct: 151 NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVF 210
Query: 163 DGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLS 222
D + D ++V NS+I+ F G ++L +F ML PDE TL +IS S +
Sbjct: 211 DEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIK 270
Query: 223 VGQGIHGFCLKSSFDSYDYV-SSVLVSMYARCNCMNSAYHVFNSL--------------- 266
VGQ +HG +K+ D + S+ V MYA+C+ + A +F+S+
Sbjct: 271 VGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGY 330
Query: 267 ----------------FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA 310
++V+W+ALI GY+Q G+ +AL F L + A
Sbjct: 331 AMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFA 390
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQHGF------ELSVMVSSALVDMYSKCGYLGLGIQVF 364
++L A A A + G H +V++HGF E + V ++L+DMY KCG + G VF
Sbjct: 391 NILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVF 450
Query: 365 ETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424
M ER+ +++N++I+G +G+ +A E FR+++E G PD T +L AC H G V
Sbjct: 451 RKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVE 510
Query: 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSC 484
+GR F+ MT ++G+ +HY MV LLG AG LEEA S I +P D + G+LL+
Sbjct: 511 EGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAA 570
Query: 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544
C ++ N L + VA +L E +P V+LSN YAE G+W+DVM +R + G+ K+
Sbjct: 571 CKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQP 630
Query: 545 GVSWV 549
G SW+
Sbjct: 631 GCSWI 635
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/419 (24%), Positives = 197/419 (47%), Gaps = 44/419 (10%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL +++ ++H+L+AK+ L D + + LV +Y+ + A+ +FD+ R+
Sbjct: 158 VLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRN 217
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
V WNS+I + +A +F+ +L ++++PD T A + AC+ S + + VHG
Sbjct: 218 VVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHG 277
Query: 129 GAIVSG-LGRDSITSSALVTAYSKLSLIDEAIKVFDG----------------------- 164
+ + L D I S+A V Y+K S I EA +FD
Sbjct: 278 RVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTK 337
Query: 165 --------VSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLW 216
+++ ++V N++I+G+ G +++L LF + R P Y+ ++
Sbjct: 338 AARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACA 397
Query: 217 EPSLLSVGQGI------HGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPD 270
+ + L +G HGF +S + +V + L+ MY +C C+ Y VF + D
Sbjct: 398 DLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERD 457
Query: 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHG 330
V+W+A+I G++Q G +AL FR++ G+K D + + VL+A + V G H
Sbjct: 458 CVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGR--HY 515
Query: 331 Y-VIQHGFELSVMVS--SALVDMYSKCGYLGLGIQVFETMS-ERNIITYNSVILGLGLH 385
+ + F ++ + + +VD+ + G+L + E M + + + + S++ +H
Sbjct: 516 FSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVH 574
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 174/533 (32%), Positives = 286/533 (53%), Gaps = 4/533 (0%)
Query: 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSII 76
Q L K++H + K D T L+ +YA + SA +F+ R+V W S+I
Sbjct: 156 QDLDNGKKIHCQLVKVPSF-DNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMI 214
Query: 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG 136
Y + LF + + + +TY + AC++ S L ++ HG + SG+
Sbjct: 215 AGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIE 274
Query: 137 RDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196
S ++L+ Y K I A +VF+ S DLV+ +MI G+ H G +++L LF M
Sbjct: 275 LSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKM 334
Query: 197 LRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCM 256
+ P+ T+ ++SG L +G+ +HG +K + V++ LV MYA+C
Sbjct: 335 KGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTN-VANALVHMYAKCYQN 393
Query: 257 NSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316
A +VF D+V W+++I+G+SQ G +AL+ F ++N + + V +AS+ +A
Sbjct: 394 RDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSAC 453
Query: 317 AKSANVWPGAVIHGYVIQHGF--ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIIT 374
A ++ G+ +H Y ++ GF SV V +AL+D Y+KCG +F+T+ E+N IT
Sbjct: 454 ASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTIT 513
Query: 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMT 434
++++I G G G T + E F ++++K P+ESTF+++L AC H G+VN+G++ F+ M
Sbjct: 514 WSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKKYFSSMY 573
Query: 435 EEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLA 494
++Y T+HY MV +L AG LE+A I +P D GA L C ++ DL
Sbjct: 574 KDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGCGMHSRFDLG 633
Query: 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
EIV ++ + P +Y V++SN YA DGRW+ ++R+ + GL K AG S
Sbjct: 634 EIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIAGHS 686
Score = 192 bits (487), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 208/411 (50%), Gaps = 5/411 (1%)
Query: 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ 66
FL+L + SL ++ H ++ L+ D ATKLV LY AR++FD+ P+
Sbjct: 48 FLLLSKCTNIDSLRQS---HGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPE 104
Query: 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFV 126
+LW ++R Y L + L+ L++ + D+ ++ +AC+E DL + +
Sbjct: 105 PDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKI 164
Query: 127 HGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFW 186
H +V D++ + L+ Y+K I A KVF+ ++ ++V SMI+G+
Sbjct: 165 H-CQLVKVPSFDNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLC 223
Query: 187 DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVL 246
++ L LF+ M +EYT LI + S L G+ HG +KS + + + L
Sbjct: 224 EEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSL 283
Query: 247 VSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP 306
+ MY +C +++A VFN H DLV W+A+I GY+ G +AL F+K+ K +
Sbjct: 284 LDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNC 343
Query: 307 VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366
V IASVL+ N+ G +HG I+ G V++ALV MY+KC VFE
Sbjct: 344 VTIASVLSGCGLIENLELGRSVHGLSIKVGI-WDTNVANALVHMYAKCYQNRDAKYVFEM 402
Query: 367 MSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417
SE++I+ +NS+I G +G ++A F + + + P+ T ++L AC
Sbjct: 403 ESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSAC 453
Score = 34.3 bits (77), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 55/119 (46%)
Query: 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYN 376
+K N+ HG + +G + +++ LV +Y GY VF+ + E + +
Sbjct: 52 SKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWK 111
Query: 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE 435
++ L+ + + + + +++ G D+ FS L AC +++G++I ++ +
Sbjct: 112 VMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQLVK 170
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 172/559 (30%), Positives = 288/559 (51%), Gaps = 33/559 (5%)
Query: 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAH 83
++H L+ K +D F LV YA L SAR +FD+ +R+V W S+I YA
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214
Query: 84 RFNDAKSLFKNLLR-TQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITS 142
DA LF ++R ++ P++ T C+ AC++ DL V+ SG+ + +
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274
Query: 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT 202
SALV Y K + ID A ++FD +L LCN+M S + G ++L +F+ M+ G
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVR 334
Query: 203 PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHV 262
PD +++ IS + + G+ HG+ L++ F+S+D + + L+ MY +C+ ++A+ +
Sbjct: 335 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 394
Query: 263 FNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKL------------------------- 297
F+ + + +VTW++++ GY + G+ A F +
Sbjct: 395 FDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAI 454
Query: 298 -------NMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDM 350
+ +G AD V + S+ +A + I+ Y+ ++G +L V + + LVDM
Sbjct: 455 EVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDM 514
Query: 351 YSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTF 410
+S+CG + +F +++ R++ + + I + + G +A E F D+IE+GL PD F
Sbjct: 515 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAF 574
Query: 411 SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470
L AC HGGLV G+EIF M + +G+ + HY MV LLG AG LEEA I +P
Sbjct: 575 VGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMP 634
Query: 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMK 530
+ + +LL+ C + GN ++A A ++ P + V+LSN YA GRW+D+ K
Sbjct: 635 MEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAK 694
Query: 531 LRDDIVDNGLRKEAGVSWV 549
+R + + GLRK G S +
Sbjct: 695 VRLSMKEKGLRKPPGTSSI 713
Score = 188 bits (478), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 144/544 (26%), Positives = 261/544 (47%), Gaps = 16/544 (2%)
Query: 14 KSHQSLSRTKELHALVAKASLLRDPFYATKLVRL---YALNNVLPSARILFDKTPQR-SV 69
K+ +++ K H + K L D TKLV L A+ +F+ + +
Sbjct: 40 KNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTC 99
Query: 70 FLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGG 129
F++NS+IR YA + N+A LF ++ + + PD +T+ AC+++ +HG
Sbjct: 100 FMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGL 159
Query: 130 AIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKS 189
+ G +D ++LV Y++ +D A KVFD +S+ ++V SMI G+A F +
Sbjct: 160 IVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDA 219
Query: 190 LQLFDWMLRLGK-TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248
+ LF M+R + TP+ T+V +IS + L G+ ++ F S + D + S LV
Sbjct: 220 VDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVD 279
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL 308
MY +CN ++ A +F+ +L +A+ + Y +QG +AL F + G + D +
Sbjct: 280 MYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRIS 339
Query: 309 IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS 368
+ S +++ ++ N+ G HGYV+++GFE + +AL+DMY KC ++F+ MS
Sbjct: 340 MLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMS 399
Query: 369 ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGRE 428
+ ++T+NS++ G +G A+E F + EK + + S L+ G L + E
Sbjct: 400 NKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLV----QGSLFEEAIE 455
Query: 429 IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEA---YSFIWSLPKPVDPAVSGALLSCC 485
+F M + G+ A + + G G L+ A Y +I +D + L+
Sbjct: 456 VFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMF 515
Query: 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAG 545
G+ + A + + L D + R ++L DD+++ GL+ + G
Sbjct: 516 SRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAER---AIELFDDMIEQGLKPD-G 571
Query: 546 VSWV 549
V++V
Sbjct: 572 VAFV 575
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 167/352 (47%), Gaps = 22/352 (6%)
Query: 98 TQLKPDNFTYACITRACSEN----SDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLS 153
T KP + T+A + + L+ H GL D T + LV +L
Sbjct: 19 TTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELG 78
Query: 154 LIDE---AIKVFDGV-SDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLV 209
+ A +VF+ S + NS+I G+A G ++++ LF M+ G +PD+YT
Sbjct: 79 TRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFP 138
Query: 210 GLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHP 269
+S + G IHG +K + +V + LV YA C ++SA VF+ +
Sbjct: 139 FGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSER 198
Query: 270 DLVTWSALITGYSQQGDYGKALY--YFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAV 327
++V+W+++I GY+++ D+ K +FR + + + V + V++A AK ++ G
Sbjct: 199 NVVSWTSMICGYARR-DFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEK 257
Query: 328 IHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGF 387
++ ++ G E++ ++ SALVDMY KC + + ++F+ N+ N++ G
Sbjct: 258 VYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGL 317
Query: 388 TYQAFEFFRDIIEKGLNPDESTFSALLCAC-----------CHGGLVNDGRE 428
T +A F +++ G+ PD + + + +C CHG ++ +G E
Sbjct: 318 TREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFE 369
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/404 (21%), Positives = 172/404 (42%), Gaps = 34/404 (8%)
Query: 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSII 76
+ L ++++A + + + + + LV +Y N + A+ LFD+ ++ L N++
Sbjct: 250 EDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMA 309
Query: 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG 136
Y +A +F ++ + ++PD + +CS+ ++ + HG + +G
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFE 369
Query: 137 RDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196
+AL+ Y K D A ++FD +S+ +V NS+++G+ G D + + F+ M
Sbjct: 370 SWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETM 429
Query: 197 --------------------------------LRLGKTPDEYTLVGLISGLWEPSLLSVG 224
+ G D T++ + S L +
Sbjct: 430 PEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLA 489
Query: 225 QGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQ 284
+ I+ + K+ + + LV M++RC SA +FNSL + D+ W+A I +
Sbjct: 490 KWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMA 549
Query: 285 GDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQ-HGFELSVMV 343
G+ +A+ F + QG K D V L A + V G I +++ HG +
Sbjct: 550 GNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVH 609
Query: 344 SSALVDMYSKCGYLGLGIQVFETMS-ERNIITYNSVILGLGLHG 386
+VD+ + G L +Q+ E M E N + +NS++ + G
Sbjct: 610 YGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQG 653
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 177/543 (32%), Positives = 285/543 (52%), Gaps = 2/543 (0%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
+ + S QS + ++ HALV K S D + T LV +Y ++ +F P+R+
Sbjct: 124 IFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERN 183
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL-PGL-RFV 126
+ W++++ YA R +A +F LR + + + Y S + + GL R +
Sbjct: 184 TYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQI 243
Query: 127 HGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFW 186
H I +GL S+ALVT YSK ++EA K+FD D + + ++M++G++ G
Sbjct: 244 HCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGES 303
Query: 187 DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVL 246
++++LF M G P EYT+VG+++ + L G+ +H F LK F+ + + ++ L
Sbjct: 304 LEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTAL 363
Query: 247 VSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP 306
V MYA+ C+ A F+ L D+ W++LI+GY Q D +AL +R++ G +
Sbjct: 364 VDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPND 423
Query: 307 VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366
+ASVL A + A + G +HG+ I+HGF L V + SAL MYSKCG L G VF
Sbjct: 424 PTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRR 483
Query: 367 MSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426
++++++N++I GL +G +A E F +++ +G+ PD+ TF ++ AC H G V G
Sbjct: 484 TPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERG 543
Query: 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCH 486
F M+++ G+ K +HY MV LL AG L+EA FI S + LLS C
Sbjct: 544 WFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACK 603
Query: 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGV 546
+G +L +L R+ + V LS Y GR DV ++ + NG+ KE G
Sbjct: 604 NHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGC 663
Query: 547 SWV 549
SW+
Sbjct: 664 SWI 666
Score = 165 bits (417), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 112/436 (25%), Positives = 213/436 (48%), Gaps = 9/436 (2%)
Query: 3 FNLHFLVLELSKSHQSLSRT----KELHALVAKASLLRDPFYATKLVRLYALNNVLPSAR 58
N H L +H S R + +H + + +A LV YA L A
Sbjct: 10 LNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAH 69
Query: 59 ILFDKTPQRSVFLWNSIIRAYALAHRFNDAKS---LFKNLLRTQLKPDNFTYACITRACS 115
+F+ + V WNS+I Y+ + + + LF+ + + P+ +T A I +A S
Sbjct: 70 SIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAES 129
Query: 116 ENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNS 175
R H + D ++LV Y K L+++ +KVF + + + ++
Sbjct: 130 SLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWST 189
Query: 176 MISGFAHCGFWDKSLQLFDWMLRLGK--TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLK 233
M+SG+A G ++++++F+ LR + + +Y ++S L + +G+ IH +K
Sbjct: 190 MVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIK 249
Query: 234 SSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYY 293
+ + +S+ LV+MY++C +N A +F+S + +TWSA++TGYSQ G+ +A+
Sbjct: 250 NGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKL 309
Query: 294 FRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK 353
F ++ G K I VL A + + G +H ++++ GFE + ++ALVDMY+K
Sbjct: 310 FSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAK 369
Query: 354 CGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSAL 413
G L + F+ + ER++ + S+I G + +A +R + G+ P++ T +++
Sbjct: 370 AGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASV 429
Query: 414 LCACCHGGLVNDGREI 429
L AC + G+++
Sbjct: 430 LKACSSLATLELGKQV 445
Score = 137 bits (344), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/344 (29%), Positives = 169/344 (49%), Gaps = 11/344 (3%)
Query: 96 LRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155
+T+L P T S+ +L R VHG I +G ++ LV Y+K +
Sbjct: 6 FQTELNPHTSTLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKL 65
Query: 156 DEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKS---LQLFDWMLRLGKTPDEYTLVGLI 212
+A +F+ + D+V NS+I+G++ G S +QLF M P+ YTL G+
Sbjct: 66 AKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIF 125
Query: 213 SGLWEPSLLS--VGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPD 270
E SL S VG+ H +K S YV + LV MY + + VF + +
Sbjct: 126 KA--ESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERN 183
Query: 271 LVTWSALITGYSQQGDYGKALYYFR---KLNMQGKKADPVLIASVLAAAAKSANVWPGAV 327
TWS +++GY+ +G +A+ F + +G +D V A VL++ A + V G
Sbjct: 184 TYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTA-VLSSLAATIYVGLGRQ 242
Query: 328 IHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGF 387
IH I++G V +S+ALV MYSKC L ++F++ +RN IT+++++ G +G
Sbjct: 243 IHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGE 302
Query: 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFT 431
+ +A + F + G+ P E T +L AC + +G+++ +
Sbjct: 303 SLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHS 346
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 172/542 (31%), Positives = 296/542 (54%), Gaps = 9/542 (1%)
Query: 13 SKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLW 72
S +H++ + K++HA + L F TKL+ + + AR +FD P+ +F W
Sbjct: 30 SATHKA--QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPW 87
Query: 73 NSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIV 132
N+IIR Y+ + F DA ++ N+ ++ PD+FT+ + +ACS S L RFVH
Sbjct: 88 NAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFR 147
Query: 133 SGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPD--LVLCNSMISGFAHCGFWDKSL 190
G D + L+ Y+K + A VF+G+ P+ +V +++S +A G ++L
Sbjct: 148 LGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEAL 207
Query: 191 QLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMY 250
++F M ++ PD LV +++ L G+ IH +K + + L +MY
Sbjct: 208 EIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMY 267
Query: 251 ARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA 310
A+C + +A +F+ + P+L+ W+A+I+GY++ G +A+ F ++ + + D + I
Sbjct: 268 AKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISIT 327
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER 370
S ++A A+ ++ ++ YV + + V +SSAL+DM++KCG + VF+ +R
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDR 387
Query: 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430
+++ ++++I+G GLHG +A +R + G++P++ TF LL AC H G+V +G F
Sbjct: 388 DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF 447
Query: 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVS--GALLSCCHIY 488
RM ++ I + +HY ++ LLG AG+L++AY I + PV P V+ GALLS C +
Sbjct: 448 NRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCM--PVQPGVTVWGALLSACKKH 504
Query: 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSW 548
+ +L E A QLF DP + V LSN YA WD V ++R + + GL K+ G SW
Sbjct: 505 RHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSW 564
Query: 549 VS 550
V
Sbjct: 565 VE 566
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 177/550 (32%), Positives = 285/550 (51%), Gaps = 5/550 (0%)
Query: 3 FNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFD 62
F L+ + SH L + H+++ K L ++ F LV +YA L AR +F+
Sbjct: 429 FTFTSLLSTCAASHD-LEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFE 487
Query: 63 KTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPG 122
+ R WN+II +Y ++A LFK + + D A +AC+ L
Sbjct: 488 RMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQ 547
Query: 123 LRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAH 182
+ VH ++ GL RD T S+L+ YSK +I +A KVF + + +V N++I+G++
Sbjct: 548 GKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQ 607
Query: 183 CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSY-DY 241
++++ LF ML G P E T ++ +P L++G HG K F S +Y
Sbjct: 608 NNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEGEY 666
Query: 242 VSSVLVSMYARCNCMNSAYHVFNSLFHPD-LVTWSALITGYSQQGDYGKALYYFRKLNMQ 300
+ L+ MY M A +F+ L P +V W+ +++G+SQ G Y +AL +++++
Sbjct: 667 LGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHD 726
Query: 301 GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360
G D +VL + +++ G IH + +L + S+ L+DMY+KCG +
Sbjct: 727 GVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGS 786
Query: 361 IQVFETMSER-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419
QVF+ M R N++++NS+I G +G+ A + F + + + PDE TF +L AC H
Sbjct: 787 SQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSH 846
Query: 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSG 479
G V+DGR+IF M +YGI+A+ +H MV LLG G L+EA FI + D +
Sbjct: 847 AGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARLWS 906
Query: 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539
+LL C I+G+ EI A +L E +P+ + V+LSN YA G W+ LR + D G
Sbjct: 907 SLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRG 966
Query: 540 LRKEAGVSWV 549
++K G SW+
Sbjct: 967 VKKVPGYSWI 976
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 118/422 (27%), Positives = 205/422 (48%), Gaps = 7/422 (1%)
Query: 54 LPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRA 113
L AR+LF + V WN +I + A F N+ ++ +K T + A
Sbjct: 277 LKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSA 336
Query: 114 CSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLC 173
++L VH AI GL + S+LV+ YSK ++ A KVF+ + + + V
Sbjct: 337 IGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFW 396
Query: 174 NSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLK 233
N+MI G+AH G K ++LF M G D++T L+S L +G H +K
Sbjct: 397 NAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIK 456
Query: 234 SSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYY 293
+V + LV MYA+C + A +F + D VTW+ +I Y Q + +A
Sbjct: 457 KKLAKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDL 516
Query: 294 FRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK 353
F+++N+ G +D +AS L A ++ G +H ++ G + + S+L+DMYSK
Sbjct: 517 FKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSK 576
Query: 354 CGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSAL 413
CG + +VF ++ E ++++ N++I G + +A F++++ +G+NP E TF+ +
Sbjct: 577 CGIIKDARKVFSSLPEWSVVSMNALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATI 635
Query: 414 LCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN---LEEAYSFIWSLP 470
+ AC + G + ++T+ G ++ E+ + LLG+ N + EA + L
Sbjct: 636 VEACHKPESLTLGTQFHGQITKR-GFSSEGEY--LGISLLGMYMNSRGMTEACALFSELS 692
Query: 471 KP 472
P
Sbjct: 693 SP 694
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 126/494 (25%), Positives = 221/494 (44%), Gaps = 68/494 (13%)
Query: 44 LVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPD 103
+V LYA + A FD ++ V WNS++ Y+ + F +L Q+ P+
Sbjct: 101 IVDLYAKCAQVSYAEKQFD-FLEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPN 159
Query: 104 NFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFD 163
FT++ + C+ +++ R +H I GL R+S ALV Y+K I +A +VF+
Sbjct: 160 KFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRVFE 219
Query: 164 GVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM-------------------LRLGK--- 201
+ DP+ V + SG+ G ++++ +F+ M +RLGK
Sbjct: 220 WIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKD 279
Query: 202 ---------TPD---------------------EY--------------TLVGLISGLWE 217
+PD EY TL ++S +
Sbjct: 280 ARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGI 339
Query: 218 PSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSAL 277
+ L +G +H +K S YV S LVSMY++C M +A VF +L + V W+A+
Sbjct: 340 VANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAM 399
Query: 278 ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF 337
I GY+ G+ K + F + G D S+L+ A S ++ G+ H +I+
Sbjct: 400 IRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKL 459
Query: 338 ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRD 397
++ V +ALVDMY+KCG L Q+FE M +R+ +T+N++I +AF+ F+
Sbjct: 460 AKNLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKR 519
Query: 398 IIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG 457
+ G+ D + ++ L AC H + G+++ ++ + G+ ++ + G
Sbjct: 520 MNLCGIVSDGACLASTLKACTHVHGLYQGKQVHC-LSVKCGLDRDLHTGSSLIDMYSKCG 578
Query: 458 NLEEAYSFIWSLPK 471
+++A SLP+
Sbjct: 579 IIKDARKVFSSLPE 592
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/409 (24%), Positives = 193/409 (47%), Gaps = 3/409 (0%)
Query: 25 LHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHR 84
+HA K L + + + LV +Y+ + +A +F+ +++ WN++IR YA
Sbjct: 349 VHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGE 408
Query: 85 FNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSA 144
+ LF ++ + D+FT+ + C+ + DL H I L ++ +A
Sbjct: 409 SHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNA 468
Query: 145 LVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPD 204
LV Y+K +++A ++F+ + D D V N++I + ++ LF M G D
Sbjct: 469 LVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSD 528
Query: 205 EYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFN 264
L + L G+ +H +K D + S L+ MY++C + A VF+
Sbjct: 529 GACLASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFS 588
Query: 265 SLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324
SL +V+ +ALI GYSQ + +A+ F+++ +G + A+++ A K ++
Sbjct: 589 SLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTL 647
Query: 325 GAVIHGYVIQHGFELS-VMVSSALVDMYSKCGYLGLGIQVF-ETMSERNIITYNSVILGL 382
G HG + + GF + +L+ MY + +F E S ++I+ + ++ G
Sbjct: 648 GTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGH 707
Query: 383 GLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFT 431
+GF +A +F++++ G+ PD++TF +L C + +GR I +
Sbjct: 708 SQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHS 756
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 129/293 (44%), Gaps = 36/293 (12%)
Query: 124 RFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC 183
+ VH +++ G+ + +A+V Y+K + + A K FD + + D+ NSM+S ++
Sbjct: 80 KAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSSI 138
Query: 184 GFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS 243
G K L+ F + P+++T ++S + + G+ IH +K + Y
Sbjct: 139 GKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCG 198
Query: 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKK 303
LV MYA+C+ ++ A VF + P+ V W+ L +GY + G +A+ F ++ +G +
Sbjct: 199 GALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHR 258
Query: 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQV 363
D + +V ++ Y + G L +
Sbjct: 259 PDHLAFVTV-----------------------------------INTYIRLGKLKDARLL 283
Query: 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416
F MS +++ +N +I G G G A E+F ++ + + ST ++L A
Sbjct: 284 FGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSA 336
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 124/280 (44%), Gaps = 9/280 (3%)
Query: 221 LSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITG 280
L +G+ +H L DS + + +V +YA+C ++ A F+ L D+ W+++++
Sbjct: 76 LRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSM 134
Query: 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELS 340
YS G GK L F L + + VL+ A+ NV G IH +I+ G E +
Sbjct: 135 YSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERN 194
Query: 341 VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIE 400
ALVDMY+KC + +VFE + + N + + + G G +A F + +
Sbjct: 195 SYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRD 254
Query: 401 KGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460
+G PD F ++ G + D R +F M+ + + M+ G G
Sbjct: 255 EGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVA-----WNVMISGHGKRGCET 309
Query: 461 EAYSFIWSLPKPVDPAVS---GALLSCCHIYGNSDLAEIV 497
A + +++ K + G++LS I N DL +V
Sbjct: 310 VAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVV 349
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 291 bits (745), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 181/570 (31%), Positives = 297/570 (52%), Gaps = 39/570 (6%)
Query: 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSII 76
+S S+ K+LHA + L A+ ++ +Y +L A +LF V W S+I
Sbjct: 19 KSKSQAKQLHAQFIRTQSLSHT-SASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVI 77
Query: 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG 136
R + F+ A + F + + PD+ + + ++C+ DL VHG + G+
Sbjct: 78 RCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMD 137
Query: 137 RDSITSSALVTAY-------SKLSL-----------------------------IDEAIK 160
D T +AL+ Y SK+S+ ID +
Sbjct: 138 CDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRR 197
Query: 161 VFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSL 220
VF+ + D+V N++I+G+A G ++ +L++ M PD +TL ++ E
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVD 257
Query: 221 LSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITG 280
+ G+ IHG+ ++ DS Y+ S LV MYA+ + + VF+ L+ D ++W++L+ G
Sbjct: 258 VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAG 317
Query: 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELS 340
Y Q G Y +AL FR++ K V +SV+ A A A + G +HGYV++ GF +
Sbjct: 318 YVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSN 377
Query: 341 VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIE 400
+ ++SALVDMYSKCG + ++F+ M+ + +++ ++I+G LHG ++A F ++
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437
Query: 401 KGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460
+G+ P++ F A+L AC H GLV++ F MT+ YG+ + EHY + LLG AG LE
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 497
Query: 461 EAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK-GAYKVMLSNTY 519
EAY+FI + +V LLS C ++ N +LAE VA ++F D GAY V++ N Y
Sbjct: 498 EAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAY-VLMCNMY 556
Query: 520 AEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
A +GRW ++ KLR + GLRK+ SW+
Sbjct: 557 ASNGRWKEMAKLRLRMRKKGLRKKPACSWI 586
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 129/280 (46%), Gaps = 10/280 (3%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL + + + + KE+H V + + D + + LV +YA + + + +F + R
Sbjct: 248 VLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRD 307
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
WNS++ Y R+N+A LF+ ++ ++KP ++ + AC+ + L + +HG
Sbjct: 308 GISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHG 367
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
+ G G + +SALV YSK I A K+FD ++ D V ++I G A G +
Sbjct: 368 YVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHE 427
Query: 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHG-----FCLKSSFDSYDYVS 243
++ LF+ M R G P++ V +++ L+ G + L + Y V+
Sbjct: 428 AVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVA 487
Query: 244 SVLVSMYARCNCMNSAYHVFNSL-FHPDLVTWSALITGYS 282
+L R + AY+ + + P WS L++ S
Sbjct: 488 DLL----GRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCS 523
>sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230
OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2
Length = 760
Score = 288 bits (738), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 175/600 (29%), Positives = 288/600 (48%), Gaps = 70/600 (11%)
Query: 21 RTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYA 80
+T + HA + K+ D + + KL+ Y+ N A ++ P +++ ++S+I A
Sbjct: 33 KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92
Query: 81 LAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSI 140
A F + +F + L PD+ + + C+E S + +H + VSGL D+
Sbjct: 93 KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152
Query: 141 TSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLC--------------------------- 173
++ Y + + +A KVFD +SD D+V C
Sbjct: 153 VQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSG 212
Query: 174 --------NSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQ 225
N ++SGF G+ +++ +F + LG PD+ T+ ++ + + +L++G+
Sbjct: 213 IEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGR 272
Query: 226 GIHGFCLKSSFDSYDYVSSVLVSMYAR---------------------CNC--------- 255
IHG+ +K V S ++ MY + CN
Sbjct: 273 LIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNG 332
Query: 256 -MNSAYHVFN----SLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA 310
++ A +F ++V+W+++I G +Q G +AL FR++ + G K + V I
Sbjct: 333 LVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIP 392
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER 370
S+L A A + G HG+ ++ +V V SAL+DMY+KCG + L VF M +
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK 452
Query: 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430
N++ +NS++ G +HG + F ++ L PD +F++LL AC GL ++G + F
Sbjct: 453 NLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYF 512
Query: 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGN 490
M+EEYGI+ + EHY MV LLG AG L+EAY I +P D V GALL+ C + N
Sbjct: 513 KMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNN 572
Query: 491 SDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
DLAEI A +LF +P V+LSN YA G W +V +R+ + GL+K G SW+
Sbjct: 573 VDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQ 632
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 55/99 (55%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIR 77
+L + H + LL + + L+ +YA + ++I+F+ P +++ WNS++
Sbjct: 403 ALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMN 462
Query: 78 AYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSE 116
+++ + + S+F++L+RT+LKPD ++ + AC +
Sbjct: 463 GFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQ 501
>sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990
OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2
Length = 823
Score = 288 bits (737), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 175/536 (32%), Positives = 286/536 (53%), Gaps = 6/536 (1%)
Query: 14 KSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWN 73
K+ +++ ++H L K + D + A L+ LY+ + +ARILFD+ P R + WN
Sbjct: 161 KACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWN 220
Query: 74 SIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVS 133
++I Y + +A +L N LR D+ T + AC+E D +H +I
Sbjct: 221 AMISGYCQSGNAKEALTL-SNGLRAM---DSVTVVSLLSACTEAGDFNRGVTIHSYSIKH 276
Query: 134 GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLF 193
GL + S+ L+ Y++ + + KVFD + DL+ NS+I + +++ LF
Sbjct: 277 GLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLF 336
Query: 194 DWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDY-VSSVLVSMYAR 252
M PD TL+ L S L + + + + GF L+ + D + + +V MYA+
Sbjct: 337 QEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAK 396
Query: 253 CNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KADPVLIAS 311
++SA VFN L + D+++W+ +I+GY+Q G +A+ + + +G+ A+ S
Sbjct: 397 LGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVS 456
Query: 312 VLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERN 371
VL A +++ + G +HG ++++G L V V ++L DMY KCG L + +F + N
Sbjct: 457 VLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVN 516
Query: 372 IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFT 431
+ +N++I G HG +A F++++++G+ PD TF LL AC H GLV++G+ F
Sbjct: 517 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFE 576
Query: 432 RMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNS 491
M +YGI +HY MV + G AG LE A FI S+ D ++ GALLS C ++GN
Sbjct: 577 MMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNV 636
Query: 492 DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVS 547
DL +I + LFE +P Y V+LSN YA G+W+ V ++R GLRK G S
Sbjct: 637 DLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWS 692
Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 123/517 (23%), Positives = 251/517 (48%), Gaps = 18/517 (3%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIR 77
+L K LHA + + +++ + KLV LY + AR FD R V+ WN +I
Sbjct: 66 NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125
Query: 78 AYALAHRFNDAKSLFK-NLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG 136
Y A ++ F +L + L PD T+ + +AC D G + +H A+ G
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID--GNK-IHCLALKFGFM 182
Query: 137 RDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196
D +++L+ YS+ + A +FD + D+ N+MISG+ G ++L L + +
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL 242
Query: 197 LRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCM 256
+ D T+V L+S E + G IH + +K +S +VS+ L+ +YA +
Sbjct: 243 ----RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRL 298
Query: 257 NSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316
VF+ ++ DL++W+++I Y +A+ F+++ + + D + + S+ +
Sbjct: 299 RDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL 358
Query: 317 AKSANVWPGAVIHGYVIQHGFELS-VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITY 375
++ ++ + G+ ++ G+ L + + +A+V MY+K G + VF + ++I++
Sbjct: 359 SQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISW 418
Query: 376 NSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCHGGLVNDGREIFTRMT 434
N++I G +GF +A E + + E+G + ++ T+ ++L AC G + G ++ R+
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLL 478
Query: 435 EEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLA 494
+ G+ + + G G LE+A S + +P+ V+ L++C +G+ + A
Sbjct: 479 KN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPR-VNSVPWNTLIACHGFHGHGEKA 536
Query: 495 EIVAHQLFEN--DPRKGAYKVMLS----NTYAEDGRW 525
++ ++ + P + +LS + ++G+W
Sbjct: 537 VMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 573
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 152/303 (50%), Gaps = 20/303 (6%)
Query: 118 SDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMI 177
++L + +H +VS ++ S+ LV Y L + A FD + + D+ N MI
Sbjct: 65 TNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMI 124
Query: 178 SGFAHCGFWDKSLQLFD-WMLRLGKTPDEYTLVGLISGLWEPSLLSV------GQGIHGF 230
SG+ G + ++ F +ML G TPD T PS+L G IH
Sbjct: 125 SGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTF---------PSVLKACRTVIDGNKIHCL 175
Query: 231 CLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKA 290
LK F YV++ L+ +Y+R + +A +F+ + D+ +W+A+I+GY Q G+ +A
Sbjct: 176 ALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA 235
Query: 291 LYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDM 350
L L + D V + S+L+A ++ + G IH Y I+HG E + VS+ L+D+
Sbjct: 236 LTLSNGL----RAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDL 291
Query: 351 YSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTF 410
Y++ G L +VF+ M R++I++NS+I L+ +A F+++ + PD T
Sbjct: 292 YAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL 351
Query: 411 SAL 413
+L
Sbjct: 352 ISL 354
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL +L + +LH + K L D F T L +Y L A LF + P+ +
Sbjct: 457 VLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVN 516
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSEN 117
WN++I + A LFK +L +KPD+ T+ + ACS +
Sbjct: 517 SVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHS 565
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 288 bits (737), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 165/533 (30%), Positives = 264/533 (49%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIR 77
+L R ++LHA K + L+ LYA + +A F +T +V LWN ++
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 463
Query: 78 AYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGR 137
AY L ++ +F+ + ++ P+ +TY I + C DL +H I +
Sbjct: 464 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQL 523
Query: 138 DSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWML 197
++ S L+ Y+KL +D A + + D+V +MI+G+ F DK+L F ML
Sbjct: 524 NAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 583
Query: 198 RLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMN 257
G DE L +S L GQ IH S F S + LV++Y+RC +
Sbjct: 584 DRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIE 643
Query: 258 SAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAA 317
+Y F D + W+AL++G+ Q G+ +AL F ++N +G + S + AA+
Sbjct: 644 ESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAAS 703
Query: 318 KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNS 377
++AN+ G +H + + G++ V +AL+ MY+KCG + + F +S +N +++N+
Sbjct: 704 ETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNA 763
Query: 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY 437
+I HGF +A + F +I + P+ T +L AC H GLV+ G F M EY
Sbjct: 764 IINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEY 823
Query: 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIV 497
G+ K EHY+ +V +L AG L A FI +P D V LLS C ++ N ++ E
Sbjct: 824 GLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFA 883
Query: 498 AHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
AH L E +P A V+LSN YA +WD R + + G++KE G SW+
Sbjct: 884 AHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIE 936
Score = 188 bits (478), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 113/423 (26%), Positives = 213/423 (50%), Gaps = 1/423 (0%)
Query: 14 KSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWN 73
K++ SL ++LH+ + K L + + KL Y L A +FD+ P+R++F WN
Sbjct: 96 KTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWN 155
Query: 74 SIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENS-DLPGLRFVHGGAIV 132
+I+ A + + LF ++ + P+ T++ + AC S + +H +
Sbjct: 156 KMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILY 215
Query: 133 SGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQL 192
GL ++ + L+ YS+ +D A +VFDG+ D +MISG + ++++L
Sbjct: 216 QGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRL 275
Query: 193 FDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYAR 252
F M LG P Y ++S + L +G+ +HG LK F S YV + LVS+Y
Sbjct: 276 FCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 335
Query: 253 CNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASV 312
+ SA H+F+++ D VT++ LI G SQ G KA+ F+++++ G + D +AS+
Sbjct: 336 LGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASL 395
Query: 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI 372
+ A + ++ G +H Y + GF + + AL+++Y+KC + + F N+
Sbjct: 396 VVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV 455
Query: 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTR 432
+ +N +++ GL +F FR + + + P++ T+ ++L C G + G +I ++
Sbjct: 456 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 515
Query: 433 MTE 435
+ +
Sbjct: 516 IIK 518
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 118/454 (25%), Positives = 210/454 (46%), Gaps = 1/454 (0%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL K +SL ++LH LV K D + LV LY L SA +F QR
Sbjct: 294 VLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRD 353
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128
+N++I + A LFK + L+PD+ T A + ACS + L + +H
Sbjct: 354 AVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
G ++ AL+ Y+K + I+ A+ F ++VL N M+ +
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRN 473
Query: 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248
S ++F M P++YT ++ L +G+ IH +K++F YV SVL+
Sbjct: 474 SFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLID 533
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL 308
MYA+ +++A+ + D+V+W+ +I GY+Q KAL FR++ +G ++D V
Sbjct: 534 MYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVG 593
Query: 309 IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS 368
+ + ++A A + G IH GF + +ALV +YS+CG + FE
Sbjct: 594 LTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE 653
Query: 369 ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGRE 428
+ I +N+++ G G +A F + +G++ + TF + + A + G++
Sbjct: 654 AGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ 713
Query: 429 IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEA 462
+ +T+ G ++TE ++ + G++ +A
Sbjct: 714 VHAVITKT-GYDSETEVCNALISMYAKCGSISDA 746
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 112/472 (23%), Positives = 215/472 (45%), Gaps = 2/472 (0%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALA 82
+++HA + L L+ LY+ N + AR +FD + W ++I +
Sbjct: 207 EQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKN 266
Query: 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITS 142
+A LF ++ + P + ++ + AC + L +HG + G D+
Sbjct: 267 ECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVC 326
Query: 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT 202
+ALV+ Y L + A +F +S D V N++I+G + CG+ +K+++LF M G
Sbjct: 327 NALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLE 386
Query: 203 PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHV 262
PD TL L+ L GQ +H + K F S + + L+++YA+C + +A
Sbjct: 387 PDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDY 446
Query: 263 FNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANV 322
F ++V W+ ++ Y D + FR++ ++ + S+L + ++
Sbjct: 447 FLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDL 506
Query: 323 WPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGL 382
G IH +I+ F+L+ V S L+DMY+K G L + + ++++++ ++I G
Sbjct: 507 ELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 566
Query: 383 GLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK 442
+ F +A FR ++++G+ DE + + AC + +G++I + G +
Sbjct: 567 TQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS-GFSSD 625
Query: 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLA 494
+V L G +EE+Y + + D AL+S GN++ A
Sbjct: 626 LPFQNALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQSGNNEEA 676
Score = 130 bits (326), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/463 (24%), Positives = 203/463 (43%), Gaps = 36/463 (7%)
Query: 100 LKPDNFTYACITRAC-SENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEA 158
++P++ T + C N L R +H + GL + S L Y + A
Sbjct: 80 IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139
Query: 159 IKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEP 218
KVFD + + + N MI A + LF M+ TP+E T G++
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 199
Query: 219 SL-LSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSAL 277
S+ V + IH L V + L+ +Y+R ++ A VF+ L D +W A+
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 259
Query: 278 ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF 337
I+G S+ +A+ F + + G P +SVL+A K ++ G +HG V++ GF
Sbjct: 260 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 319
Query: 338 ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRD 397
V +ALV +Y G L +F MS+R+ +TYN++I GL G+ +A E F+
Sbjct: 320 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 379
Query: 398 IIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE---------------------- 435
+ GL PD +T ++L+ AC G + G+++ T+
Sbjct: 380 MHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCAD 439
Query: 436 -----EYGIQAKTEHYI---YMVKLLGLAGNLEEAYSFIWSLP-KPVDPA--VSGALLSC 484
+Y ++ + E+ + M+ GL +L ++ + + + P ++L
Sbjct: 440 IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKT 499
Query: 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKV-MLSNTYAEDGRWD 526
C G+ +L E + Q+ + + + AY +L + YA+ G+ D
Sbjct: 500 CIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLD 542
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 14/272 (5%)
Query: 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSII 76
Q+L +++HA + D + LV LY+ + + + F++T WN+++
Sbjct: 605 QALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALV 664
Query: 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG 136
+ + +A +F + R + +NFT+ +A SE +++ + VH A+++ G
Sbjct: 665 SGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVH--AVITKTG 722
Query: 137 RDSITS--SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFD 194
DS T +AL++ Y+K I +A K F VS + V N++I+ ++ GF ++L FD
Sbjct: 723 YDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFD 782
Query: 195 WMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGF-CLKSSF----DSYDYVSSVLVSM 249
M+ P+ TLVG++S L V +GI F + S + YV +V M
Sbjct: 783 QMIHSNVRPNHVTLVGVLSACSHIGL--VDKGIAYFESMNSEYGLSPKPEHYV--CVVDM 838
Query: 250 YARCNCMNSAYHVFNSL-FHPDLVTWSALITG 280
R ++ A + PD + W L++
Sbjct: 839 LTRAGLLSRAKEFIQEMPIKPDALVWRTLLSA 870
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 288 bits (737), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 165/547 (30%), Positives = 288/547 (52%), Gaps = 15/547 (2%)
Query: 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSII 76
+ L K++HA + L + F LV +Y L S+++L R + WN+++
Sbjct: 216 EGLMMGKQVHAYGLRKGEL-NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVL 274
Query: 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSG-L 135
+ + +A + ++ ++PD FT + + ACS L + +H A+ +G L
Sbjct: 275 SSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSL 334
Query: 136 GRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDW 195
+S SALV Y + +VFDG+ D + L N+MI+G++ ++L LF
Sbjct: 335 DENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIG 394
Query: 196 MLR-LGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN 254
M G + T+ G++ S + IHGF +K D +V + L+ MY+R
Sbjct: 395 MEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLG 454
Query: 255 CMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKL-NMQGK----------K 303
++ A +F + DLVTW+ +ITGY + AL K+ N++ K K
Sbjct: 455 KIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLK 514
Query: 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQV 363
+ + + ++L + A + + G IH Y I++ V V SALVDMY+KCG L + +V
Sbjct: 515 PNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKV 574
Query: 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLV 423
F+ + ++N+IT+N +I+ G+HG +A + R ++ +G+ P+E TF ++ AC H G+V
Sbjct: 575 FDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMV 634
Query: 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVS-GALL 482
++G IF M +YG++ ++HY +V LLG AG ++EAY + +P+ + A + +LL
Sbjct: 635 DEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLL 694
Query: 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542
I+ N ++ EI A L + +P ++ V+L+N Y+ G WD ++R ++ + G+RK
Sbjct: 695 GASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRK 754
Query: 543 EAGVSWV 549
E G SW+
Sbjct: 755 EPGCSWI 761
Score = 155 bits (393), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 115/430 (26%), Positives = 195/430 (45%), Gaps = 18/430 (4%)
Query: 17 QSLSRTKELHALVAKASLLRDPF-YATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSI 75
Q + K++HA V K D A LV LY + +FD+ +R+ WNS+
Sbjct: 111 QDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSL 170
Query: 76 IRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGL---RFVHGGAIV 132
I + ++ A F+ +L ++P +FT + ACS GL + VH +
Sbjct: 171 ISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLR 230
Query: 133 SGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQL 192
G +S + LV Y KL + + + DLV N+++S ++L+
Sbjct: 231 KG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEY 289
Query: 193 FDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKS-SFDSYDYVSSVLVSMYA 251
M+ G PDE+T+ ++ +L G+ +H + LK+ S D +V S LV MY
Sbjct: 290 LREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYC 349
Query: 252 RCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ-GKKADPVLIA 310
C + S VF+ +F + W+A+I GYSQ +AL F + G A+ +A
Sbjct: 350 NCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMA 409
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER 370
V+ A +S IHG+V++ G + V + L+DMYS+ G + + +++F M +R
Sbjct: 410 GVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDR 469
Query: 371 NIITYNSVILG-----------LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419
+++T+N++I G L LH + + L P+ T +L +C
Sbjct: 470 DLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAA 529
Query: 420 GGLVNDGREI 429
+ G+EI
Sbjct: 530 LSALAKGKEI 539
Score = 149 bits (375), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 187/373 (50%), Gaps = 11/373 (2%)
Query: 55 PSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRAC 114
PS I ++P+ W ++R+ ++ +A + +++ +KPDN+ + + +A
Sbjct: 52 PSIFISQSRSPE----WWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAV 107
Query: 115 SENSDLPGLRFVHGGAIVSGLGRDSIT-SSALVTAYSKLSLIDEAIKVFDGVSDPDLVLC 173
++ D+ + +H G G DS+T ++ LV Y K KVFD +S+ + V
Sbjct: 108 ADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSW 167
Query: 174 NSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLI---SGLWEPSLLSVGQGIHGF 230
NS+IS W+ +L+ F ML P +TLV ++ S L P L +G+ +H +
Sbjct: 168 NSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY 227
Query: 231 CLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKA 290
L+ + ++ + LV+MY + + S+ + S DLVTW+ +++ Q +A
Sbjct: 228 GLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEA 286
Query: 291 LYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG-FELSVMVSSALVD 349
L Y R++ ++G + D I+SVL A + + G +H Y +++G + + V SALVD
Sbjct: 287 LEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVD 346
Query: 350 MYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNPDES 408
MY C + G +VF+ M +R I +N++I G + +A F + E GL + +
Sbjct: 347 MYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANST 406
Query: 409 TFSALLCACCHGG 421
T + ++ AC G
Sbjct: 407 TMAGVVPACVRSG 419
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 288 bits (737), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 156/495 (31%), Positives = 267/495 (53%), Gaps = 4/495 (0%)
Query: 60 LFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSD 119
+FD P+R+V W++++ + L + SLF + R + P+ FT++ +AC +
Sbjct: 63 VFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122
Query: 120 LPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISG 179
L +HG + G ++LV YSK I+EA KVF + D L+ N+MI+G
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 182
Query: 180 FAHCGFWDKSLQLFDWMLR--LGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFD 237
F H G+ K+L F M + + PDE+TL L+ ++ G+ IHGF ++S F
Sbjct: 183 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 242
Query: 238 --SYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFR 295
S ++ LV +Y +C + SA F+ + +++WS+LI GY+Q+G++ +A+ F+
Sbjct: 243 CPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFK 302
Query: 296 KLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355
+L + D ++S++ A A + G + ++ L V +++VDMY KCG
Sbjct: 303 RLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCG 362
Query: 356 YLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC 415
+ + F M +++I++ VI G G HG ++ F +++ + PDE + A+L
Sbjct: 363 LVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLS 422
Query: 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDP 475
AC H G++ +G E+F+++ E +GI+ + EHY +V LLG AG L+EA I ++P +
Sbjct: 423 ACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNV 482
Query: 476 AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535
+ LLS C ++G+ +L + V L D + A VM+SN Y + G W++ R+
Sbjct: 483 GIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELG 542
Query: 536 VDNGLRKEAGVSWVS 550
GL+KEAG+SWV
Sbjct: 543 NIKGLKKEAGMSWVE 557
Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 121/225 (53%), Gaps = 2/225 (0%)
Query: 207 TLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL 266
LV ++ L G +H + LKS S+ L+ MY +C AY VF+S+
Sbjct: 8 NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67
Query: 267 FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGA 326
++V+WSAL++G+ GD +L F ++ QG + ++ L A + G
Sbjct: 68 PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGL 127
Query: 327 VIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHG 386
IHG+ ++ GFE+ V V ++LVDMYSKCG + +VF + +R++I++N++I G G
Sbjct: 128 QIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAG 187
Query: 387 FTYQAFEFFRDIIEKGLN--PDESTFSALLCACCHGGLVNDGREI 429
+ +A + F + E + PDE T ++LL AC G++ G++I
Sbjct: 188 YGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQI 232
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 39/97 (40%)
Query: 19 LSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRA 78
L + K++ AL K + +V +Y ++ A F + + V W +I
Sbjct: 329 LRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITG 388
Query: 79 YALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACS 115
Y + +F +LR ++PD Y + ACS
Sbjct: 389 YGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACS 425
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 281 bits (720), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 172/542 (31%), Positives = 278/542 (51%), Gaps = 39/542 (7%)
Query: 36 RDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLF--- 92
RD +++ Y N L AR LF+ P+R V WN+++ YA +DA+S+F
Sbjct: 124 RDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM 183
Query: 93 --KN------LLRTQLKPDNFTYACITRACSENSDLPGLR-----FVHGGAIVSGLG--- 136
KN LL ++ AC+ EN L FV IV
Sbjct: 184 PEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFD 243
Query: 137 ----RDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQL 192
RD ++ + ++T Y++ IDEA ++FD D+ +M+SG+ +++ +L
Sbjct: 244 SMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEAREL 303
Query: 193 FDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS----SVLVS 248
FD K P+ + W L QG K FD + + +++
Sbjct: 304 FD------KMPERNEVS------WNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMIT 351
Query: 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL 308
YA+C ++ A ++F+ + D V+W+A+I GYSQ G +AL F ++ +G + +
Sbjct: 352 GYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSS 411
Query: 309 IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS 368
+S L+ A + G +HG +++ G+E V +AL+ MY KCG + +F+ M+
Sbjct: 412 FSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMA 471
Query: 369 ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGRE 428
++I+++N++I G HGF A FF + +GL PD++T A+L AC H GLV+ GR+
Sbjct: 472 GKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531
Query: 429 IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488
F MT++YG+ ++HY MV LLG AG LE+A++ + ++P D A+ G LL ++
Sbjct: 532 YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVH 591
Query: 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSW 548
GN++LAE A ++F +P V+LSN YA GRW DV KLR + D G++K G SW
Sbjct: 592 GNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSW 651
Query: 549 VS 550
+
Sbjct: 652 IE 653
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/392 (21%), Positives = 169/392 (43%), Gaps = 52/392 (13%)
Query: 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAI 131
WN I +Y R N+A +FK + R + +Y + N + R +
Sbjct: 67 WNVAISSYMRTGRCNEALRVFKRMPRWS----SVSYNGMISGYLRNGEFELARKLFDEMP 122
Query: 132 VSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQ 191
RD ++ + ++ Y + + +A ++F+ + + D+ N+M+SG+A G D +
Sbjct: 123 ----ERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARS 178
Query: 192 LFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS-SVLVSMY 250
+FD M ++ + L+S + S + L S +++ VS + L+ +
Sbjct: 179 VFDRM----PEKNDVSWNALLSAYVQNSKME-----EACMLFKSRENWALVSWNCLLGGF 229
Query: 251 ARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA 310
+ + A F+S+ D+V+W+ +ITGY+Q G +A F + +Q +++
Sbjct: 230 VKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVS 289
Query: 311 S-----VLAAAAKSANVWP-------GAVIHGYVIQHGFELS-----------VMVSSAL 347
++ A + + P A++ GYV E++ V + +
Sbjct: 290 GYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTM 349
Query: 348 VDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE 407
+ Y++CG + +F+ M +R+ +++ ++I G G +++A F + +G +
Sbjct: 350 ITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNR 409
Query: 408 STFSALLCACC-----------HGGLVNDGRE 428
S+FS+ L C HG LV G E
Sbjct: 410 SSFSSALSTCADVVALELGKQLHGRLVKGGYE 441
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 281 bits (720), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 168/531 (31%), Positives = 276/531 (51%), Gaps = 6/531 (1%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALA 82
K++HA + + L D L+ Y + +A LF+ P +++ W +++ Y
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQN 328
Query: 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITS 142
+A LF ++ + LKPD + + I +C+ L VH I + LG DS +
Sbjct: 329 ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVT 388
Query: 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGF-WD--KSLQLF-DWMLR 198
++L+ Y+K + +A KVFD + D+VL N+MI G++ G W+ ++L +F D R
Sbjct: 389 NSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFR 448
Query: 199 LGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS 258
L + P T V L+ + L + + IHG K + + S L+ +Y+ C C+
Sbjct: 449 LIR-PSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKD 507
Query: 259 AYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318
+ VF+ + DLV W+++ GY QQ + +AL F +L + ++ D A+++ AA
Sbjct: 508 SRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGN 567
Query: 319 SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSV 378
A+V G H +++ G E + +++AL+DMY+KCG + F++ + R+++ +NSV
Sbjct: 568 LASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSV 627
Query: 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438
I HG +A + ++ +G+ P+ TF +L AC H GLV DG + F M +G
Sbjct: 628 ISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELML-RFG 686
Query: 439 IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVA 498
I+ +TEHY+ MV LLG AG L +A I +P V +LLS C GN +LAE A
Sbjct: 687 IEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAA 746
Query: 499 HQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
+DP+ MLSN YA G W + K+R+ + G+ KE G SW+
Sbjct: 747 EMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWI 797
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/413 (25%), Positives = 205/413 (49%), Gaps = 3/413 (0%)
Query: 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAH 83
+L + + K+ RD + T L+ Y + + AR++FD P++S W ++I
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228
Query: 84 RFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSS 143
R + LF L+ + PD + + + ACS L G + +H + GL D+ +
Sbjct: 229 RSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288
Query: 144 ALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTP 203
L+ +Y K + A K+F+G+ + +++ +++SG+ ++++LF M + G P
Sbjct: 289 VLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKP 348
Query: 204 DEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVF 263
D Y +++ L G +H + +K++ + YV++ L+ MYA+C+C+ A VF
Sbjct: 349 DMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF 408
Query: 264 NSLFHPDLVTWSALITGYSQQG---DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA 320
+ D+V ++A+I GYS+ G + +AL FR + + + + S+L A+A
Sbjct: 409 DIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLT 468
Query: 321 NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVIL 380
++ IHG + ++G L + SAL+D+YS C L VF+ M ++++ +NS+
Sbjct: 469 SLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFA 528
Query: 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRM 433
G +A F ++ PDE TF+ ++ A + V G+E ++
Sbjct: 529 GYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQL 581
Score = 152 bits (385), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 111/415 (26%), Positives = 199/415 (47%), Gaps = 8/415 (1%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
+L+L S L +H + L D + + L+ LY+ + AR +F+K P+R+
Sbjct: 50 LLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERN 109
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQL-KPDNFTYACITRACSENSDLPGLRFV- 126
+ W++++ A + ++ +F RT+ P+ + + +ACS D G V
Sbjct: 110 LVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACS-GLDGRGRWMVF 168
Query: 127 --HGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCG 184
+ SG RD + L+ Y K ID A VFD + + V +MISG G
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228
Query: 185 FWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSS 244
SLQLF ++ PD Y L ++S L G+ IH L+ + + +
Sbjct: 229 RSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288
Query: 245 VLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKA 304
VL+ Y +C + +A+ +FN + + ++++W+ L++GY Q + +A+ F ++ G K
Sbjct: 289 VLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKP 348
Query: 305 DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVF 364
D +S+L + A + G +H Y I+ V+++L+DMY+KC L +VF
Sbjct: 349 DMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF 408
Query: 365 ETMSERNIITYNSVILG---LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416
+ + +++ +N++I G LG ++A FRD+ + + P TF +LL A
Sbjct: 409 DIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRA 463
Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/443 (23%), Positives = 203/443 (45%), Gaps = 5/443 (1%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
+L S +L ++HA KA+L D + L+ +YA + L AR +FD
Sbjct: 356 ILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAAD 415
Query: 69 VFLWNSIIRAYA---LAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRF 125
V L+N++I Y+ ++A ++F+++ ++P T+ + RA + + L +
Sbjct: 416 VVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQ 475
Query: 126 VHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGF 185
+HG GL D SAL+ YS + ++ VFD + DLV+ NSM +G+
Sbjct: 476 IHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSE 535
Query: 186 WDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSV 245
+++L LF + + PDE+T +++ + + +GQ H LK + Y+++
Sbjct: 536 NEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNA 595
Query: 246 LVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD 305
L+ MYA+C A+ F+S D+V W+++I+ Y+ G+ KAL K+ +G + +
Sbjct: 596 LLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPN 655
Query: 306 PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFE 365
+ VL+A + + V G +++ G E +V + + G L ++ E
Sbjct: 656 YITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIE 715
Query: 366 TMSER-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424
M + I + S++ G G + E ++ D +F+ L G+
Sbjct: 716 KMPTKPAAIVWRSLLSGCAKAG-NVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWT 774
Query: 425 DGREIFTRMTEEYGIQAKTEHYI 447
+ +++ RM E ++ +I
Sbjct: 775 EAKKVRERMKVEGVVKEPGRSWI 797
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 156/296 (52%), Gaps = 5/296 (1%)
Query: 126 VHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGF 185
VHG IV GL D+ S+ L+ YS+ + A KVF+ + + +LV ++M+S H G
Sbjct: 66 VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125
Query: 186 WDKSLQLFDWMLRLGK-TPDEYTLVGLI---SGLWEPSLLSVGQGIHGFCLKSSFDSYDY 241
+++SL +F R K +P+EY L I SGL V Q + F +KS FD Y
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQ-LQSFLVKSGFDRDVY 184
Query: 242 VSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQG 301
V ++L+ Y + ++ A VF++L VTW+ +I+G + G +L F +L
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244
Query: 302 KKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI 361
D ++++VL+A + + G IH +++++G E+ + + L+D Y KCG +
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAH 304
Query: 362 QVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417
++F M +NII++ +++ G + +A E F + + GL PD S++L +C
Sbjct: 305 KLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSC 360
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 107/224 (47%), Gaps = 4/224 (1%)
Query: 220 LLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALIT 279
LL +HG + + Y+S++L+++Y+R M A VF + +LV+WS +++
Sbjct: 59 LLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVS 118
Query: 280 GYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN---VWPGAVIHGYVIQHG 336
+ G Y ++L F + K + I S A + W + ++++ G
Sbjct: 119 ACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSG 178
Query: 337 FELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFR 396
F+ V V + L+D Y K G + VF+ + E++ +T+ ++I G G +Y + + F
Sbjct: 179 FDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFY 238
Query: 397 DIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ 440
++E + PD S +L AC + G++I + YG++
Sbjct: 239 QLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHIL-RYGLE 281
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/533 (30%), Positives = 271/533 (50%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIR 77
+++ K++H + L D F L++ + +LF T ++FL+NS+I
Sbjct: 25 TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLIN 84
Query: 78 AYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGR 137
+ H F++ LF ++ + L FT+ + +AC+ S +H + G
Sbjct: 85 GFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNH 144
Query: 138 DSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWML 197
D ++L++ YS +++A K+FD + D +V ++ SG+ G +++ LF M+
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204
Query: 198 RLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMN 257
+G PD Y +V ++S L G+ I + + +V + LV++YA+C M
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKME 264
Query: 258 SAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAA 317
A VF+S+ D+VTWS +I GY+ + + F ++ + K D I L++ A
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324
Query: 318 KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNS 377
+ G + +H F ++ +++AL+DMY+KCG + G +VF+ M E++I+ N+
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNA 384
Query: 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY 437
I GL +G +F F + G++PD STF LLC C H GL+ DG F ++ Y
Sbjct: 385 AISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVY 444
Query: 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIV 497
++ EHY MV L G AG L++AY I +P + V GALLS C + ++ LAE V
Sbjct: 445 ALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETV 504
Query: 498 AHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
+L +P V LSN Y+ GRWD+ ++RD + G++K G SW+
Sbjct: 505 LKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIE 557
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/394 (24%), Positives = 179/394 (45%), Gaps = 2/394 (0%)
Query: 8 LVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQR 67
LVL+ S +LH+LV K D T L+ +Y+ + L A LFD+ P R
Sbjct: 116 LVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDR 175
Query: 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVH 127
SV W ++ Y + R +A LFK ++ +KPD++ + AC DL ++
Sbjct: 176 SVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIV 235
Query: 128 GGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWD 187
+ ++S + LV Y+K +++A VFD + + D+V ++MI G+A F
Sbjct: 236 KYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPK 295
Query: 188 KSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLV 247
+ ++LF ML+ PD++++VG +S L +G+ + F + ++++ L+
Sbjct: 296 EGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALI 355
Query: 248 SMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPV 307
MYA+C M + VF + D+V +A I+G ++ G + F + G D
Sbjct: 356 DMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415
Query: 308 LIASVLAAAAKSANVWPG-AVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366
+L + + G + + + +V +VD++ + G L ++
Sbjct: 416 TFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICD 475
Query: 367 MSER-NIITYNSVILGLGLHGFTYQAFEFFRDII 399
M R N I + +++ G L T A +++I
Sbjct: 476 MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELI 509
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 280 bits (715), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 160/534 (29%), Positives = 272/534 (50%), Gaps = 7/534 (1%)
Query: 23 KELHALVAKASLL---RDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAY 79
K++H L+ + + RD F + L R AR L + S+ LW+S+I +
Sbjct: 18 KQIHCLLLTSPIFYTRRDLFLSRLLRRCCTAATQFRYARRLLCQLQTLSIQLWDSLIGHF 77
Query: 80 ALAHRFNDAKSL--FKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGR 137
+ N S ++++ R + P T+ + +A + D +F H + GL
Sbjct: 78 SGGITLNRRLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRDSNPFQF-HAHIVKFGLDS 136
Query: 138 DSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWML 197
D ++L++ YS L D A ++FDG D D+V +MI GF G +++ F M
Sbjct: 137 DPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSASEAMVYFVEMK 196
Query: 198 RLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYD-YVSSVLVSMYARCNCM 256
+ G +E T+V ++ + + G+ +HG L++ D ++ S LV MY +C+C
Sbjct: 197 KTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCY 256
Query: 257 NSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316
+ A VF+ + ++VTW+ALI GY Q + K + F ++ + ++SVL+A
Sbjct: 257 DDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSAC 316
Query: 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYN 376
A + G +H Y+I++ E++ + L+D+Y KCG L I VFE + E+N+ T+
Sbjct: 317 AHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWT 376
Query: 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEE 436
++I G HG+ AF+ F ++ ++P+E TF A+L AC HGGLV +GR +F M
Sbjct: 377 AMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGR 436
Query: 437 YGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEI 496
+ ++ K +HY MV L G G LEEA + I +P V GAL C ++ + +L +
Sbjct: 437 FNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKY 496
Query: 497 VAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
A ++ + P +L+N Y+E WD+V ++R + D + K G SW+
Sbjct: 497 AASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIE 550
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIR 77
+L R + +H + K S+ + T L+ LY L A ++F++ +++V+ W ++I
Sbjct: 321 ALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMIN 380
Query: 78 AYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSG 134
+A DA LF +L + + P+ T+ + AC+ HGG + G
Sbjct: 381 GFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACA-----------HGGLVEEG 426
>sp|Q9C9I6|PP116_ARATH Pentatricopeptide repeat-containing protein At1g71490
OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1
Length = 681
Score = 280 bits (715), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 167/566 (29%), Positives = 283/566 (50%), Gaps = 36/566 (6%)
Query: 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAH 83
++HA + + KLV Y+ N+ A+ + + + WN +I +YA
Sbjct: 64 QVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIENSDILHPLPWNVLIASYAKNE 123
Query: 84 RFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSS 143
F + + +K ++ ++PD FTY + +AC E D+ R VHG VS +
Sbjct: 124 LFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCN 183
Query: 144 ALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWML------ 197
AL++ Y + + A ++FD + + D V N++I+ +A G W ++ +LFD M
Sbjct: 184 ALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEV 243
Query: 198 --------------------------RLGKTPDEYTLVGLISGLWEPSLLS---VGQGIH 228
R+ P V +I GL SL+ +G+ IH
Sbjct: 244 SVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIH 303
Query: 229 GFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYG 288
G + SS+D D V + L++MY++C + A VF L TW+++I+GY+Q
Sbjct: 304 GLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSE 363
Query: 289 KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG-FELSVMVSSAL 347
+A + R++ + G + + + +AS+L A+ AN+ G H Y+++ F+ M+ ++L
Sbjct: 364 EASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSL 423
Query: 348 VDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE 407
VD+Y+K G + QV + MS+R+ +TY S+I G G G A F+++ G+ PD
Sbjct: 424 VDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDH 483
Query: 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIW 467
T A+L AC H LV++G +F +M EYGI+ +H+ MV L G AG L +A I
Sbjct: 484 VTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIH 543
Query: 468 SLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDD 527
++P A LL+ CHI+GN+ + + A +L E P Y V+++N YA G W
Sbjct: 544 NMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSK 603
Query: 528 VMKLRDDIVDNGLRKEAGVSWVSGSS 553
+ ++R + D G++K+ G +W+ S
Sbjct: 604 LAEVRTIMRDLGVKKDPGCAWIDTDS 629
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 110/230 (47%), Gaps = 4/230 (1%)
Query: 206 YTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNS 265
++ L+S + G +H C+ S + + + LV+ Y+ N N A + +
Sbjct: 44 HSAASLLSACVDVRAFLAGVQVHAHCISSGVEYHSVLVPKLVTFYSAFNLHNEAQSIIEN 103
Query: 266 --LFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVW 323
+ HP + W+ LI Y++ + + + ++++ +G + D SVL A ++ +V
Sbjct: 104 SDILHP--LPWNVLIASYAKNELFEEVIAAYKRMVSKGIRPDAFTYPSVLKACGETLDVA 161
Query: 324 PGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLG 383
G V+HG + ++ S+ V +AL+ MY + +G+ ++F+ M ER+ +++N+VI
Sbjct: 162 FGRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYA 221
Query: 384 LHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRM 433
G +AFE F + G+ T++ + C G + +RM
Sbjct: 222 SEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRM 271
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 278 bits (711), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 163/532 (30%), Positives = 276/532 (51%), Gaps = 3/532 (0%)
Query: 19 LSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRA 78
L+R KE+H V + D L+ +Y + SAR+LFD+ P+R + WN++I
Sbjct: 212 LARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISG 271
Query: 79 YALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD 138
Y ++ LF + + PD T + AC D R +H I +G D
Sbjct: 272 YFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVD 331
Query: 139 SITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLR 198
++L Y EA K+F + D+V +MISG+ + DK++ + M +
Sbjct: 332 ISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQ 391
Query: 199 LGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS 258
PDE T+ ++S L G +H +K+ SY V++ L++MY++C C++
Sbjct: 392 DSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDK 451
Query: 259 AYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318
A +F+++ ++++W+++I G +AL + R++ M + + + + + LAA A+
Sbjct: 452 ALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACAR 510
Query: 319 SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSV 378
+ G IH +V++ G L + +AL+DMY +CG + F + ++++ ++N +
Sbjct: 511 IGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNS-QKKDVTSWNIL 569
Query: 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438
+ G G E F +++ + PDE TF +LLC C +V G F++M E+YG
Sbjct: 570 LTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYG 628
Query: 439 IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVA 498
+ +HY +V LLG AG L+EA+ FI +P DPAV GALL+ C I+ DL E+ A
Sbjct: 629 VTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSA 688
Query: 499 HQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
+FE D + Y ++L N YA+ G+W +V K+R + +NGL +AG SWV
Sbjct: 689 QHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVE 740
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 112/377 (29%), Positives = 189/377 (50%), Gaps = 2/377 (0%)
Query: 54 LPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQ-LKPDNFTYACITR 112
L A +F K +R++F WN ++ YA F++A L+ +L +KPD +T+ C+ R
Sbjct: 145 LVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLR 204
Query: 113 ACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVL 172
C DL + VH + G D +AL+T Y K + A +FD + D++
Sbjct: 205 TCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIIS 264
Query: 173 CNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCL 232
N+MISG+ G + L+LF M L PD TL +IS +G+ IH + +
Sbjct: 265 WNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVI 324
Query: 233 KSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALY 292
+ F V + L MY A +F+ + D+V+W+ +I+GY KA+
Sbjct: 325 TTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAID 384
Query: 293 YFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYS 352
+R ++ K D + +A+VL+A A ++ G +H I+ V+V++ L++MYS
Sbjct: 385 TYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYS 444
Query: 353 KCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSA 412
KC + + +F + +N+I++ S+I GL L+ ++A F R ++ L P+ T +A
Sbjct: 445 KCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQ-MKMTLQPNAITLTA 503
Query: 413 LLCACCHGGLVNDGREI 429
L AC G + G+EI
Sbjct: 504 ALAACARIGALMCGKEI 520
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 126/254 (49%), Gaps = 1/254 (0%)
Query: 177 ISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSF 236
+ G G +++++L + M L DE V L+ G ++ L S
Sbjct: 66 LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMS 125
Query: 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKAL-YYFR 295
+ + ++M+ R + A++VF + +L +W+ L+ GY++QG + +A+ Y R
Sbjct: 126 SLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHR 185
Query: 296 KLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355
L + G K D VL ++ G +H +V+++G+EL + V +AL+ MY KCG
Sbjct: 186 MLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCG 245
Query: 356 YLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC 415
+ +F+ M R+II++N++I G +G ++ E F + ++PD T ++++
Sbjct: 246 DVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVIS 305
Query: 416 ACCHGGLVNDGREI 429
AC G GR+I
Sbjct: 306 ACELLGDRRLGRDI 319
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 278 bits (710), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 169/519 (32%), Positives = 273/519 (52%), Gaps = 19/519 (3%)
Query: 48 YALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDA--KSLFKN--------LLR 97
Y N LP + + K P SV L N I + A A N+ +SL K +L
Sbjct: 14 YHTVNFLPRSPL---KPPSCSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQAIRVLS 70
Query: 98 TQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDE 157
+ P TY + C S L VH + +G +D ++ L+ YS L +D
Sbjct: 71 QESSPSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDY 130
Query: 158 AIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYT----LVGLIS 213
A KVFD + + N++ G ++ L L+ M R+G D +T L ++
Sbjct: 131 ARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVA 190
Query: 214 GLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVT 273
+ L G+ IH + + S+ Y+ + LV MYAR C++ A +VF + ++V+
Sbjct: 191 SECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVS 250
Query: 274 WSALITGYSQQGDYGKALYYFRKLNMQGKKADP--VLIASVLAAAAKSANVWPGAVIHGY 331
WSA+I Y++ G +AL FR++ + K + P V + SVL A A A + G +IHGY
Sbjct: 251 WSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGY 310
Query: 332 VIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQA 391
+++ G + + V SALV MY +CG L +G +VF+ M +R+++++NS+I G+HG+ +A
Sbjct: 311 ILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKA 370
Query: 392 FEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVK 451
+ F +++ G +P TF ++L AC H GLV +G+ +F M ++GI+ + EHY MV
Sbjct: 371 IQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVD 430
Query: 452 LLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511
LLG A L+EA + + P V G+LL C I+GN +LAE + +LF +P+
Sbjct: 431 LLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGN 490
Query: 512 KVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
V+L++ YAE WD+V +++ + GL+K G W+
Sbjct: 491 YVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWME 529
Score = 155 bits (392), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 202/432 (46%), Gaps = 12/432 (2%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIR 77
SLS +H + +DPF ATKL+ +Y+ + AR +FDKT +R++++WN++ R
Sbjct: 92 SLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFR 151
Query: 78 AYALAHRFNDAKSLFKNLLRTQLKPDNFTY-----ACITRACSENSDLPGLRFVHGGAIV 132
A LA + L+ + R ++ D FTY AC+ C+ N + G + +H
Sbjct: 152 ALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKG-KEIHAHLTR 210
Query: 133 SGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQL 192
G + LV Y++ +D A VF G+ ++V ++MI+ +A G ++L+
Sbjct: 211 RGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRT 270
Query: 193 FDWMLRLGK--TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMY 250
F M+R K +P+ T+V ++ + L G+ IHG+ L+ DS V S LV+MY
Sbjct: 271 FREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMY 330
Query: 251 ARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA 310
RC + VF+ + D+V+W++LI+ Y G KA+ F ++ G PV
Sbjct: 331 GRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFV 390
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQ-HGFELSVMVSSALVDMYSKCGYLGLGIQVFETM-S 368
SVL A + V G + + + HG + + + +VD+ + L ++ + M +
Sbjct: 391 SVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRT 450
Query: 369 ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGRE 428
E + S++ +HG A R + L P + LL + D +
Sbjct: 451 EPGPKVWGSLLGSCRIHGNVELAERASRRLF--ALEPKNAGNYVLLADIYAEAQMWDEVK 508
Query: 429 IFTRMTEEYGIQ 440
++ E G+Q
Sbjct: 509 RVKKLLEHRGLQ 520
>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720
OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1
Length = 860
Score = 276 bits (707), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 167/532 (31%), Positives = 272/532 (51%), Gaps = 2/532 (0%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALA 82
+++H V K L DP+ T L+ +Y+ ++ A +F + + +WN+++ AYA
Sbjct: 292 RQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAEN 351
Query: 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITS 142
A LF + + + PD+FT + + CS + VH + S
Sbjct: 352 DYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIE 411
Query: 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT 202
SAL+T YSK +A VF + + D+V S+ISG G + ++L++F M +
Sbjct: 412 SALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDS 471
Query: 203 --PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAY 260
PD + + + L G +HG +K+ +V S L+ +Y++C A
Sbjct: 472 LKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMAL 531
Query: 261 HVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA 320
VF S+ ++V W+++I+ YS+ ++ F + QG D V I SVL A + +A
Sbjct: 532 KVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTA 591
Query: 321 NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVIL 380
++ G +HGY ++ G + +AL+DMY KCG+ +F+ M +++IT+N +I
Sbjct: 592 SLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIY 651
Query: 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ 440
G G HG A F ++ + G +PD+ TF +L+ AC H G V +G+ IF M ++YGI+
Sbjct: 652 GYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIE 711
Query: 441 AKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500
EHY MV LLG AG LEEAYSFI ++P D ++ LLS + N +L + A +
Sbjct: 712 PNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEK 771
Query: 501 LFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVSGS 552
L +P +G+ V L N Y E G ++ KL + + GL K+ G SW+ S
Sbjct: 772 LLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVS 823
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 200/397 (50%), Gaps = 3/397 (0%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLY-ALNNVLPSARILFDKTPQRSVFLWNSIIRAYAL 81
K++H + + SL D F T L+ +Y + + R+ + + +V LWN +I +
Sbjct: 190 KQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGG 249
Query: 82 AHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSIT 141
+ + L+ +K + ++ ACS++ + R +H + GL D
Sbjct: 250 SGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHNDPYV 309
Query: 142 SSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGK 201
++L++ YSK ++ EA VF V D L + N+M++ +A + +L LF +M +
Sbjct: 310 CTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSV 369
Query: 202 TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYH 261
PD +TL +IS L + G+ +H K S + S L+++Y++C C AY
Sbjct: 370 LPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCDPDAYL 429
Query: 262 VFNSLFHPDLVTWSALITGYSQQGDYGKALYYF--RKLNMQGKKADPVLIASVLAAAAKS 319
VF S+ D+V W +LI+G + G + +AL F K + K D ++ SV A A
Sbjct: 430 VFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGL 489
Query: 320 ANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVI 379
+ G +HG +I+ G L+V V S+L+D+YSKCG + ++VF +MS N++ +NS+I
Sbjct: 490 EALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMI 549
Query: 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416
+ + + F ++ +G+ PD + +++L A
Sbjct: 550 SCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVA 586
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 118/442 (26%), Positives = 200/442 (45%), Gaps = 25/442 (5%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ-- 66
+L+ + +LS K +H V DPF AT LV +Y L A +FD Q
Sbjct: 66 LLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDGWSQSQ 125
Query: 67 -----RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRA-CSE-NSD 119
R V +WNS+I Y RF + F+ +L ++PD F+ + + C E N
Sbjct: 126 SGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCKEGNFR 185
Query: 120 LPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDP-DLVLCNSMIS 178
+ +HG + + L DS +AL+ Y K L +A +VF + D ++VL N MI
Sbjct: 186 REEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIV 245
Query: 179 GFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDS 238
GF G + SL L+ + G + + G+ IH +K +
Sbjct: 246 GFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKMGLHN 305
Query: 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYG-KALYYFRKL 297
YV + L+SMY++C + A VF+ + L W+A++ Y++ DYG AL F +
Sbjct: 306 DPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAEN-DYGYSALDLFGFM 364
Query: 298 NMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYL 357
+ D +++V++ + G +H + + + + + SAL+ +YSKCG
Sbjct: 365 RQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKCGCD 424
Query: 358 GLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDII--EKGLNPDESTFSALLC 415
VF++M E++++ + S+I GL +G +A + F D+ + L PD +++
Sbjct: 425 PDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTN 484
Query: 416 ACC-----------HGGLVNDG 426
AC HG ++ G
Sbjct: 485 ACAGLEALRFGLQVHGSMIKTG 506
Score = 139 bits (349), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 103/389 (26%), Positives = 184/389 (47%), Gaps = 12/389 (3%)
Query: 105 FTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDG 164
FT+ + +ACS ++L + +HG +V G D +++LV Y K +D A++VFDG
Sbjct: 61 FTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLDYAVQVFDG 120
Query: 165 -------VSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWE 217
VS D+ + NSMI G+ + + + F ML G PD ++L ++S + +
Sbjct: 121 WSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLSIVVSVMCK 180
Query: 218 PSLL--SVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLF-HPDLVTW 274
G+ IHGF L++S D+ ++ + L+ MY + A+ VF + ++V W
Sbjct: 181 EGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLW 240
Query: 275 SALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQ 334
+ +I G+ G +L + K L A ++S N G IH V++
Sbjct: 241 NVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVK 300
Query: 335 HGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEF 394
G V ++L+ MYSKCG +G VF + ++ + +N+++ + + Y A +
Sbjct: 301 MGLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDL 360
Query: 395 FRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLG 454
F + +K + PD T S ++ C GL N G+ + + + IQ+ + ++ L
Sbjct: 361 FGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKR-PIQSTSTIESALLTLYS 419
Query: 455 LAGNLEEAYSFIWSLPKPVDPAVSGALLS 483
G +AY S+ + D G+L+S
Sbjct: 420 KCGCDPDAYLVFKSMEEK-DMVAWGSLIS 447
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS 68
VL S SL + K LH + + D L+ +Y A +F K +S
Sbjct: 583 VLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKS 642
Query: 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSEN 117
+ WN +I Y A SLF + + PD+ T+ + AC+ +
Sbjct: 643 LITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHS 691
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 169/548 (30%), Positives = 277/548 (50%), Gaps = 7/548 (1%)
Query: 8 LVLELSKSHQSLSRTKELHALVAKA-SLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ 66
L+L+ + S S+ + +HA + K PF A L+ +Y+ + SAR++ TP
Sbjct: 11 LLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPA 70
Query: 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFV 126
R+V W S+I A F+ A F + R + P++FT+ C +A + + +
Sbjct: 71 RNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQI 130
Query: 127 HGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFW 186
H A+ G D + Y K L D+A K+FD + + +L N+ IS G
Sbjct: 131 HALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRP 190
Query: 187 DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVL 246
++++ F R+ P+ T ++ + L++G +HG L+S FD+ V + L
Sbjct: 191 REAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGL 250
Query: 247 VSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP 306
+ Y +C + S+ +F + + V+W +L+ Y Q + KA + + +
Sbjct: 251 IDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSD 310
Query: 307 VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366
+I+SVL+A A A + G IH + ++ E ++ V SALVDMY KCG + Q F+
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDE 370
Query: 367 MSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES--TFSALLCACCHGGLVN 424
M E+N++T NS+I G G A F ++ +G P + TF +LL AC G V
Sbjct: 371 MPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVE 430
Query: 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVS--GALL 482
+G +IF M YGI+ EHY +V +LG AG +E AY FI + P+ P +S GAL
Sbjct: 431 NGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKM--PIQPTISVWGALQ 488
Query: 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542
+ C ++G L + A LF+ DP+ V+LSNT+A GRW + +R+++ G++K
Sbjct: 489 NACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKK 548
Query: 543 EAGVSWVS 550
AG SW++
Sbjct: 549 GAGYSWIT 556
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 177/574 (30%), Positives = 276/574 (48%), Gaps = 48/574 (8%)
Query: 26 HALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRF 85
HAL + + F LV +Y+ L AR +FD+ V WNSII +YA +
Sbjct: 150 HALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKP 209
Query: 86 NDAKSLFKNLLRT-QLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSA 144
A +F + +PDN T + C+ + +H A+ S + ++ +
Sbjct: 210 KVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNC 269
Query: 145 LVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFD---------- 194
LV Y+K ++DEA VF +S D+V N+M++G++ G ++ +++LF+
Sbjct: 270 LVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMD 329
Query: 195 ---W----------------------MLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHG 229
W ML G P+E TL+ ++SG L G+ IH
Sbjct: 330 VVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHC 389
Query: 230 FCLKSSFD-------SYDYVSSVLVSMYARCNCMNSAYHVFNSLF--HPDLVTWSALITG 280
+ +K D + V + L+ MYA+C +++A +F+SL D+VTW+ +I G
Sbjct: 390 YAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGG 449
Query: 281 YSQQGDYGKALYYFRKLNMQGKKADP--VLIASVLAAAAKSANVWPGAVIHGYVIQHGFE 338
YSQ GD KAL ++ + + P I+ L A A A + G IH Y +++
Sbjct: 450 YSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQN 509
Query: 339 -LSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRD 397
+ + VS+ L+DMY+KCG + VF+ M +N +T+ S++ G G+HG+ +A F +
Sbjct: 510 AVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDE 569
Query: 398 IIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG 457
+ G D T +L AC H G+++ G E F RM +G+ EHY +V LLG AG
Sbjct: 570 MRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAG 629
Query: 458 NLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517
L A I +P P V A LSCC I+G +L E A ++ E +LSN
Sbjct: 630 RLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSN 689
Query: 518 TYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVSG 551
YA GRW DV ++R + G++K G SWV G
Sbjct: 690 LYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEG 723
Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 127/462 (27%), Positives = 211/462 (45%), Gaps = 50/462 (10%)
Query: 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP--QRSVFLWNS 74
+++S+ K +H + +L + L+ Y L A L + P V+ WNS
Sbjct: 39 KTISQVKLIHQKLLSFGILTLNL-TSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNS 97
Query: 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSG 134
+IR+Y N LF + PDN+T+ + +AC E S + H ++V+G
Sbjct: 98 LIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTG 157
Query: 135 LGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFD 194
+ +ALV YS+ + +A KVFD +S D+V NS+I +A G +L++F
Sbjct: 158 FISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFS 217
Query: 195 WML-RLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARC 253
M G PD TLV ++ S+G+ +H F + S +V + LV MYA+C
Sbjct: 218 RMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKC 277
Query: 254 NCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ------------- 300
M+ A VF+++ D+V+W+A++ GYSQ G + A+ F K+ +
Sbjct: 278 GMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAI 337
Query: 301 ----------------------GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFE 338
G K + V + SVL+ A + G IH Y I++ +
Sbjct: 338 SGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPID 397
Query: 339 LSV-------MVSSALVDMYSKCGYLGLGIQVFETMS--ERNIITYNSVILGLGLHGFTY 389
L MV + L+DMY+KC + +F+++S ER+++T+ +I G HG
Sbjct: 398 LRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDAN 457
Query: 390 QAFEFFRDIIEKGLN--PDESTFSALLCACCHGGLVNDGREI 429
+A E ++ E+ P+ T S L AC + G++I
Sbjct: 458 KALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQI 499
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 62/143 (43%), Gaps = 2/143 (1%)
Query: 23 KELHALVAKASLLRDPFYATK-LVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYAL 81
K++HA + P + + L+ +YA + AR++FD ++ W S++ Y +
Sbjct: 497 KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGM 556
Query: 82 AHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL-PGLRFVHGGAIVSGLGRDSI 140
+A +F + R K D T + ACS + + G+ + + V G+
Sbjct: 557 HGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPE 616
Query: 141 TSSALVTAYSKLSLIDEAIKVFD 163
+ LV + ++ A+++ +
Sbjct: 617 HYACLVDLLGRAGRLNAALRLIE 639
>sp|Q9LR69|PPR8_ARATH Pentatricopeptide repeat-containing protein At1g03540
OS=Arabidopsis thaliana GN=PCMP-E4 PE=2 SV=1
Length = 609
Score = 275 bits (703), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 173/529 (32%), Positives = 270/529 (51%), Gaps = 7/529 (1%)
Query: 24 ELHALVAKASLLRDPFYATKLVRLY-ALNNVLPSARILFDKTPQRSVFLWNSIIRAYALA 82
+ HA V K+ L D L+ LY L + R +FD + W S++ Y
Sbjct: 82 QFHAHVVKSGLETDRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTG 141
Query: 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITS 142
A +F ++ L + FT + +ACSE ++ R HG I G + S
Sbjct: 142 KEHVKALEVFVEMVSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHFIS 201
Query: 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLR-LGK 201
S L Y +A +VFD + +PD++ +++S F+ ++++L LF M R G
Sbjct: 202 STLAYLYGVNREPVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGL 261
Query: 202 TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYH 261
PD T +++ L G+ IHG + + S V S L+ MY +C + A
Sbjct: 262 VPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQ 321
Query: 262 VFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321
VFN + + V+WSAL+ GY Q G++ KA+ FR++ ++ D +VL A A A
Sbjct: 322 VFNGMSKKNSVSWSALLGGYCQNGEHEKAIEIFREM----EEKDLYCFGTVLKACAGLAA 377
Query: 322 VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILG 381
V G IHG ++ G +V+V SAL+D+Y K G + +V+ MS RN+IT+N+++
Sbjct: 378 VRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSA 437
Query: 382 LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQA 441
L +G +A FF D+++KG+ PD +F A+L AC H G+V++GR F M + YGI+
Sbjct: 438 LAQNGRGEEAVSFFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKP 497
Query: 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGN-SDLAEIVAHQ 500
TEHY M+ LLG AG EEA + + D ++ G LL C + S +AE +A +
Sbjct: 498 GTEHYSCMIDLLGRAGLFEEAENLLERAECRNDASLWGVLLGPCAANADASRVAERIAKR 557
Query: 501 LFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
+ E +P+ V+LSN Y GR D + +R +V G+ K G SW+
Sbjct: 558 MMELEPKYHMSYVLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQSWI 606
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALA 82
KE+H + + + L+ LY + + SA ++ K R++ WN+++ A A
Sbjct: 382 KEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQN 441
Query: 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRAC 114
R +A S F ++++ +KPD ++ I AC
Sbjct: 442 GRGEEAVSFFNDMVKKGIKPDYISFIAILTAC 473
>sp|Q9SJ73|PP148_ARATH Pentatricopeptide repeat-containing protein At2g04860
OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=3
Length = 692
Score = 275 bits (702), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 166/532 (31%), Positives = 277/532 (52%), Gaps = 7/532 (1%)
Query: 19 LSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRA 78
+S+ + +H + AK+ L D L+ Y+ L SA +LF + +S WN++I A
Sbjct: 167 VSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGA 226
Query: 79 YALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD 138
Y+ + +A ++FKN+ ++ T + A + L H + G+ D
Sbjct: 227 YSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHVSHEPL------HCLVVKCGMVND 280
Query: 139 SITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLR 198
++LV AYS+ + A +++ +V S++S +A G D ++ F +
Sbjct: 281 ISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQ 340
Query: 199 LGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS 258
L D LVG++ G + S + +G +HG+ +KS + V + L++MY++ + + +
Sbjct: 341 LCMKIDAVALVGILHGCKKSSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVET 400
Query: 259 AYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKK-ADPVLIASVLAAAA 317
+F L L++W+++I+G Q G A F ++ + G D + IAS+LA +
Sbjct: 401 VLFLFEQLQETPLISWNSVISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCS 460
Query: 318 KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNS 377
+ + G +HGY +++ FE V +AL+DMY+KCG VF+++ T+NS
Sbjct: 461 QLCCLNLGKELHGYTLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAPCTATWNS 520
Query: 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY 437
+I G L G ++A + ++ EKGL PDE TF +L AC HGG V++G+ F M +E+
Sbjct: 521 MISGYSLSGLQHRALSCYLEMREKGLKPDEITFLGVLSACNHGGFVDEGKICFRAMIKEF 580
Query: 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIV 497
GI +HY MV LLG A EA IW + D AV GALLS C I+ ++ E V
Sbjct: 581 GISPTLQHYALMVGLLGRACLFTEALYLIWKMDIKPDSAVWGALLSACIIHRELEVGEYV 640
Query: 498 AHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
A ++F D + G V++SN YA + WDDV+++R+ + DNG GVS +
Sbjct: 641 ARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNGYDGYLGVSQI 692
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/459 (27%), Positives = 218/459 (47%), Gaps = 20/459 (4%)
Query: 21 RTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYA 80
+ +++ + K+ L R + T L+ LY + SA++LFD+ P+R +WN++I Y+
Sbjct: 68 QVEQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYS 127
Query: 81 LAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSI 140
DA LF +L+ P T + C + + R VHG A SGL DS
Sbjct: 128 RNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQ 187
Query: 141 TSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG 200
+AL++ YSK + + A +F + D V N+MI ++ G ++++ +F M
Sbjct: 188 VKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKN 247
Query: 201 KTPDEYTLVGLISG--LWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS 258
T++ L+S EP +H +K + V + LV Y+RC C+ S
Sbjct: 248 VEISPVTIINLLSAHVSHEP--------LHCLVVKCGMVNDISVVTSLVCAYSRCGCLVS 299
Query: 259 AYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318
A ++ S +V +++++ Y+++GD A+ YF K K D V + +L K
Sbjct: 300 AERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKK 359
Query: 319 SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSV 378
S+++ G +HGY I+ G +V + L+ MYSK + + +FE + E +I++NSV
Sbjct: 360 SSHIDIGMSLHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWNSV 419
Query: 379 ILGLGLHGFTYQAFEFFRD-IIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY 437
I G G AFE F ++ GL PD T ++LL C +N G+E+ Y
Sbjct: 420 ISGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLGKEL-----HGY 474
Query: 438 GIQAKTEHYIY----MVKLLGLAGNLEEAYSFIWSLPKP 472
++ E+ + ++ + GN +A S S+ P
Sbjct: 475 TLRNNFENENFVCTALIDMYAKCGNEVQAESVFKSIKAP 513
Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 171/362 (47%), Gaps = 8/362 (2%)
Query: 58 RILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSE- 116
RI T R + ++S++++ + ++F++LLR+ L P++FT + +A +
Sbjct: 2 RITKPITLYRDLSYFHSLLKSCIHGEISSSPITIFRDLLRSSLTPNHFTMSIFLQATTTS 61
Query: 117 -NSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNS 175
NS + V SGL R ++L+ Y K + A +FD + + D V+ N+
Sbjct: 62 FNSFKLQVEQVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNA 121
Query: 176 MISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSS 235
+I G++ G+ + +LF ML+ G +P TLV L+ + +S G+ +HG KS
Sbjct: 122 LICGYSRNGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSG 181
Query: 236 FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFR 295
+ V + L+S Y++C + SA +F + V+W+ +I YSQ G +A+ F+
Sbjct: 182 LELDSQVKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFK 241
Query: 296 KLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355
+ + + PV I ++L+A +H V++ G + V ++LV YS+CG
Sbjct: 242 NMFEKNVEISPVTIINLLSAHVSHEP------LHCLVVKCGMVNDISVVTSLVCAYSRCG 295
Query: 356 YLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC 415
L +++ + + +I+ S++ G A +F + + D +L
Sbjct: 296 CLVSAERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILH 355
Query: 416 AC 417
C
Sbjct: 356 GC 357
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 120/270 (44%), Gaps = 14/270 (5%)
Query: 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGL---WEPSLLSVGQ 225
DL +S++ H + +F +LR TP+ +T+ + + L V Q
Sbjct: 12 DLSYFHSLLKSCIHGEISSSPITIFRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVEQ 71
Query: 226 GIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQG 285
+ KS D + YV + L+++Y + C+ SA +F+ + D V W+ALI GYS+ G
Sbjct: 72 -VQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNG 130
Query: 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSS 345
A F + QG + ++L + V G +HG + G EL V +
Sbjct: 131 YECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKN 190
Query: 346 ALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP 405
AL+ YSKC LG +F M +++ +++N++I G +A F+++ EK +
Sbjct: 191 ALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEI 250
Query: 406 DESTFSALL----------CACCHGGLVND 425
T LL C G+VND
Sbjct: 251 SPVTIINLLSAHVSHEPLHCLVVKCGMVND 280
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 174/590 (29%), Positives = 294/590 (49%), Gaps = 48/590 (8%)
Query: 3 FNLHFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNN--VLPSARIL 60
F LH +L L + + L K++ A + L+ DPF +++L+ AL+ L + +
Sbjct: 50 FVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKI 109
Query: 61 FDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLR---TQLKPDNFTYACITRACSEN 117
++F WN IR ++ + ++ L+K +LR + +PD+FTY + + C++
Sbjct: 110 LKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCAD- 168
Query: 118 SDLPGLRFVHGGAIVSG------LGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLV 171
LR G ++ G L S +A + ++ ++ A KVFD DLV
Sbjct: 169 -----LRLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLV 223
Query: 172 LCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFC 231
N +I+G+ G +K++ ++ M G PD+ T++GL+S L+ G+ + +
Sbjct: 224 SWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYV 283
Query: 232 LKSS---------------------------FDSYDYVSSV----LVSMYARCNCMNSAY 260
++ FD+ + + V ++S YARC ++ +
Sbjct: 284 KENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSR 343
Query: 261 HVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA 320
+F+ + D+V W+A+I G Q AL F+++ K D + + L+A ++
Sbjct: 344 KLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLG 403
Query: 321 NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVIL 380
+ G IH Y+ ++ L+V + ++LVDMY+KCG + + VF + RN +TY ++I
Sbjct: 404 ALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIG 463
Query: 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ 440
GL LHG A +F ++I+ G+ PDE TF LL ACCHGG++ GR+ F++M + +
Sbjct: 464 GLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLN 523
Query: 441 AKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500
+ +HY MV LLG AG LEEA + S+P D AV GALL C ++GN +L E A +
Sbjct: 524 PQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKK 583
Query: 501 LFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
L E DP V+L Y E W+D + R + + G+ K G S +
Sbjct: 584 LLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIE 633
>sp|Q9LUC2|PP231_ARATH Pentatricopeptide repeat-containing protein At3g14730
OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1
Length = 653
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/533 (30%), Positives = 278/533 (52%), Gaps = 8/533 (1%)
Query: 23 KELHALVAKASLLRD-PFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYAL 81
+++H + + L D P T LV +YA ++ A ++F + +R VF +N++I + +
Sbjct: 80 QQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGGS-ERDVFGYNALISGFVV 138
Query: 82 AHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSIT 141
DA ++ + + PD +T+ + + S+ +L ++ VHG A G D
Sbjct: 139 NGSPLDAMETYREMRANGILPDKYTFPSLLKG-SDAMELSDVKKVHGLAFKLGFDSDCYV 197
Query: 142 SSALVTAYSKLSLIDEAIKVFDGVSD-PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG 200
S LVT+YSK +++A KVFD + D D VL N++++G++ ++ +L +F M G
Sbjct: 198 GSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEG 257
Query: 201 KTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAY 260
+T+ ++S + G+ IHG +K+ S VS+ L+ MY + + A
Sbjct: 258 VGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEEAN 317
Query: 261 HVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA 320
+F ++ DL TW++++ + GD+ L F ++ G + D V + +VL + A
Sbjct: 318 SIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLA 377
Query: 321 NVWPGAVIHGYVIQHGF----ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYN 376
++ G IHGY+I G + + ++L+DMY KCG L VF++M ++ ++N
Sbjct: 378 SLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWN 437
Query: 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEE 436
+I G G+ A + F + G+ PDE TF LL AC H G +N+GR +M
Sbjct: 438 IMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETV 497
Query: 437 YGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEI 496
Y I ++HY ++ +LG A LEEAY S P +P V ++LS C ++GN DLA +
Sbjct: 498 YNILPTSDHYACVIDMLGRADKLEEAYELAISKPICDNPVVWRSILSSCRLHGNKDLALV 557
Query: 497 VAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
+L E +P V++SN Y E G++++V+ +RD + ++K G SW+
Sbjct: 558 AGKRLHELEPEHCGGYVLMSNVYVEAGKYEEVLDVRDAMRQQNVKKTPGCSWI 610
Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 5/307 (1%)
Query: 19 LSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQR-SVFLWNSIIR 77
LS K++H L K D + + LV Y+ + A+ +FD+ P R LWN+++
Sbjct: 176 LSDVKKVHGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVN 235
Query: 78 AYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGR 137
Y+ RF DA +F + + T + A + + D+ R +HG A+ +G G
Sbjct: 236 GYSQIFRFEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGS 295
Query: 138 DSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWML 197
D + S+AL+ Y K ++EA +F+ + + DL NS++ +CG D +L LF+ ML
Sbjct: 296 DIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERML 355
Query: 198 RLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSF----DSYDYVSSVLVSMYARC 253
G PD TL ++ + L G+ IHG+ + S S +++ + L+ MY +C
Sbjct: 356 CSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKC 415
Query: 254 NCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVL 313
+ A VF+S+ D +W+ +I GY Q AL F + G K D + +L
Sbjct: 416 GDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLL 475
Query: 314 AAAAKSA 320
A + S
Sbjct: 476 QACSHSG 482
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQHGF-ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE 369
+ L A+ + G IHG++++ GF + S ++LV+MY+KCG + + VF SE
Sbjct: 65 ATLQRCAQRKDYVSGQQIHGFMVRKGFLDDSPRAGTSLVNMYAKCGLMRRAVLVFGG-SE 123
Query: 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALL 414
R++ YN++I G ++G A E +R++ G+ PD+ TF +LL
Sbjct: 124 RDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLL 168
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 176/530 (33%), Positives = 273/530 (51%), Gaps = 10/530 (1%)
Query: 24 ELHALVAKASLLRDPFYATKLVRLYALN-NVLPSARILFDKTPQRSVFLWNSIIRAYALA 82
++HA V K+ D A L+ +Y+ + ++ S ++ D + + N +I +++ +
Sbjct: 372 QVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQS 431
Query: 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRF---VHGGAIVSGLGRDS 139
+ A LF +L+ L+ D F+ CS S L L VHG + SGL D
Sbjct: 432 KKPGKAIRLFTRMLQEGLRTDEFS------VCSLLSVLDCLNLGKQVHGYTLKSGLVLDL 485
Query: 140 ITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRL 199
S+L T YSK ++E+ K+F G+ D SMISGF G+ +++ LF ML
Sbjct: 486 TVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDD 545
Query: 200 GKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSA 259
G +PDE TL +++ L G+ IHG+ L++ D + S LV+MY++C + A
Sbjct: 546 GTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLA 605
Query: 260 YHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKS 319
V++ L D V+ S+LI+GYSQ G FR + M G D I+S+L AAA S
Sbjct: 606 RQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALS 665
Query: 320 ANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVI 379
GA +H Y+ + G V S+L+ MYSK G + + F ++ ++I + ++I
Sbjct: 666 DESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALI 725
Query: 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439
HG +A + + + EKG PD+ TF +L AC HGGLV + M ++YGI
Sbjct: 726 ASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSMVKDYGI 785
Query: 440 QAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAH 499
+ + HY+ MV LG +G L EA SFI ++ D V G LL+ C I+G +L ++ A
Sbjct: 786 EPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAK 845
Query: 500 QLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
+ E +P + LSN AE G WD+V + R + G++KE G S V
Sbjct: 846 KAIELEPSDAGAYISLSNILAEVGEWDEVEETRKLMKGTGVQKEPGWSSV 895
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 121/476 (25%), Positives = 215/476 (45%), Gaps = 12/476 (2%)
Query: 18 SLSRTKELHALVAKASLLR-DPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSII 76
+L TK L A + + LL D F L+ Y+ + + A LFD PQ V N +I
Sbjct: 63 NLRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMI 122
Query: 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG 136
Y F ++ F + + + +Y + ACS V I G
Sbjct: 123 SGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYF 182
Query: 137 RDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196
+ SAL+ +SK ++A KVF ++ N++I+G + LF M
Sbjct: 183 FYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEM 242
Query: 197 LRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCM 256
+ PD YT +++ L G+ + +K + +V + +V +YA+C M
Sbjct: 243 CVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAEDV-FVCTAIVDLYAKCGHM 301
Query: 257 NSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316
A VF+ + +P +V+W+ +++GY++ D AL F+++ G + + + SV++A
Sbjct: 302 AEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISAC 361
Query: 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNII 373
+ + V + +H +V + GF L V++AL+ MYSK G + L QVFE + + +NI+
Sbjct: 362 GRPSMVCEASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV 421
Query: 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRM 433
N +I +A F ++++GL DE + +LL +N G+++
Sbjct: 422 --NVMITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVL---DCLNLGKQVHG-Y 475
Query: 434 TEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYG 489
T + G+ + L G+LEE+Y +P D A +++S + YG
Sbjct: 476 TLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFK-DNACWASMISGFNEYG 530
Score = 135 bits (340), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 115/457 (25%), Positives = 191/457 (41%), Gaps = 37/457 (8%)
Query: 6 HFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP 65
F V L L+ K++H K+ L+ D + L LY+ L + LF P
Sbjct: 453 EFSVCSLLSVLDCLNLGKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIP 512
Query: 66 QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRF 125
+ W S+I + +A LF +L PD T A + CS + LP +
Sbjct: 513 FKDNACWASMISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKE 572
Query: 126 VHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGF 185
+HG + +G+ + SALV YSK + A +V+D + + D V C+S+ISG++ G
Sbjct: 573 IHGYTLRAGIDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGL 632
Query: 186 WDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSV 245
LF M+ G T D + + ++ S+G +H + K + V S
Sbjct: 633 IQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSS 692
Query: 246 LVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD 305
L++MY++ ++ F+ + PDL+ W+ALI Y+Q G +AL + + +G K D
Sbjct: 693 LLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPD 752
Query: 306 PVLIASVLAAAAKSANVWPGAVIHGYVIQHG-FELSVMVSSALVDMYSKCGYLGLGIQVF 364
V VL+A + HG +++ F L+ MV ++ ++
Sbjct: 753 KVTFVGVLSACS-----------HGGLVEESYFHLNSMVKDYGIEPENR----------- 790
Query: 365 ETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424
Y ++ LG G +A F ++ + PD + LL AC G V
Sbjct: 791 ---------HYVCMVDALGRSGRLREAESFINNM---HIKPDALVWGTLLAACKIHGEVE 838
Query: 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461
G+ + E A YI + +L G +E
Sbjct: 839 LGKVAAKKAIELEPSDAGA--YISLSNILAEVGEWDE 873
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 273 bits (699), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/509 (31%), Positives = 264/509 (51%), Gaps = 4/509 (0%)
Query: 42 TKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQ-L 100
+ +V++Y + AR +FD+ P++ LWN++I Y + ++ +F++L+
Sbjct: 158 SNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCT 217
Query: 101 KPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIK 160
+ D T I A +E +L +H A +G + ++ YSK I
Sbjct: 218 RLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSA 277
Query: 161 VFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSL 220
+F PD+V N+MI G+ G + SL LF ++ G TLV L+ L
Sbjct: 278 LFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLML 337
Query: 221 LSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITG 280
+ IHG+CLKS+F S+ VS+ L ++Y++ N + SA +F+ L +W+A+I+G
Sbjct: 338 I---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISG 394
Query: 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELS 340
Y+Q G A+ FR++ +PV I +L+A A+ + G +H V FE S
Sbjct: 395 YTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454
Query: 341 VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIE 400
+ VS+AL+ MY+KCG + ++F+ M+++N +T+N++I G GLHG +A F +++
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514
Query: 401 KGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460
G+ P TF +L AC H GLV +G EIF M YG + +HY MV +LG AG+L+
Sbjct: 515 SGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQ 574
Query: 461 EAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520
A FI ++ +V LL C I+ +++LA V+ +LFE DP Y V+LSN ++
Sbjct: 575 RALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHS 634
Query: 521 EDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
D + +R L K G + +
Sbjct: 635 ADRNYPQAATVRQTAKKRKLAKAPGYTLI 663
Score = 179 bits (454), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 116/420 (27%), Positives = 214/420 (50%), Gaps = 5/420 (1%)
Query: 10 LELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSV 69
L+ K S+S + HA + D TKL + + + AR +F + V
Sbjct: 24 LDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDV 83
Query: 70 FLWNSIIRAYALAHRFNDAKSLFKNLLR-TQLKPDNFTYACITRACSENSDLPGLRFVHG 128
FL+N ++R +++ + + S+F +L + T LKP++ TYA A S D R +HG
Sbjct: 84 FLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHG 143
Query: 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188
A+V G + + S +V Y K +++A KVFD + + D +L N+MISG+ + +
Sbjct: 144 QAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVE 203
Query: 189 SLQLFDWMLRLGKTP-DEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLV 247
S+Q+F ++ T D TL+ ++ + E L +G IH K+ S+DYV + +
Sbjct: 204 SIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFI 263
Query: 248 SMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPV 307
S+Y++C + +F PD+V ++A+I GY+ G+ +L F++L + G +
Sbjct: 264 SLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSS 323
Query: 308 LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETM 367
+ S++ + ++ IHGY ++ F VS+AL +YSK + ++F+
Sbjct: 324 TLVSLVPVSGHLMLIY---AIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDES 380
Query: 368 SERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGR 427
E+++ ++N++I G +G T A FR++ + +P+ T + +L AC G ++ G+
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGK 440
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 121/260 (46%), Gaps = 10/260 (3%)
Query: 25 LHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHR 84
+H K++ L +T L +Y+ N + SAR LFD++P++S+ WN++I Y
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGL 400
Query: 85 FNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSA 144
DA SLF+ + +++ P+ T CI AC++ L ++VH + S+A
Sbjct: 401 TEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTA 460
Query: 145 LVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPD 204
L+ Y+K I EA ++FD ++ + V N+MISG+ G ++L +F ML G TP
Sbjct: 461 LIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPT 520
Query: 205 EYTLVGLISGLWEPSLLSVGQG-----IHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSA 259
T + ++ L+ G IH + + S Y + +V + R + A
Sbjct: 521 PVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY----ACMVDILGRAGHLQRA 576
Query: 260 YHVFNSL-FHPDLVTWSALI 278
++ P W L+
Sbjct: 577 LQFIEAMSIEPGSSVWETLL 596
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIR 77
+LS K +H LV + +T L+ +YA + AR LFD +++ WN++I
Sbjct: 435 ALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMIS 494
Query: 78 AYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACS 115
Y L + +A ++F +L + + P T+ C+ ACS
Sbjct: 495 GYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACS 532
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/529 (31%), Positives = 269/529 (50%), Gaps = 3/529 (0%)
Query: 24 ELHALVAKASLLRDPFYATK--LVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYAL 81
++HA K +PF L++ Y L A +LF++ P++ +N++I Y
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227
Query: 82 AHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSIT 141
+ ++ LF + ++ +P +FT++ + +A D + +H ++ +G RD+
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASV 287
Query: 142 SSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGK 201
+ ++ YSK + E +FD + + D V N +IS ++ ++ SL F M +G
Sbjct: 288 GNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGF 347
Query: 202 TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYH 261
+ ++S S L +G+ +H L ++ DS +V + LV MYA+C A
Sbjct: 348 DRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAEL 407
Query: 262 VFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321
+F SL V+W+ALI+GY Q+G +G L F K+ +AD A+VL A+A A+
Sbjct: 408 IFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFAS 467
Query: 322 VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILG 381
+ G +H ++I+ G +V S LVDMY+KCG + +QVFE M +RN +++N++I
Sbjct: 468 LLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISA 527
Query: 382 LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQA 441
+G A F +IE GL PD + +L AC H G V G E F M+ YGI
Sbjct: 528 HADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITP 587
Query: 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQL 501
K +HY M+ LLG G EA + +P D + ++L+ C I+ N LAE A +L
Sbjct: 588 KKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKL 647
Query: 502 FENDP-RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
F + R A V +SN YA G W+ V ++ + + G++K SWV
Sbjct: 648 FSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWV 696
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 186/370 (50%), Gaps = 10/370 (2%)
Query: 54 LPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQ--LKPDNFTYACIT 111
+ SAR LFD P R+V W ++ YA F++A LF+ + R+ PD+ T+ +
Sbjct: 95 VSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLL 154
Query: 112 RACSENSDLPGLRFVHGGAIVSGLGRDSI--TSSALVTAYSKLSLIDEAIKVFDGVSDPD 169
C++ + VH A+ G + S+ L+ +Y ++ +D A +F+ + + D
Sbjct: 155 PGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKD 214
Query: 170 LVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHG 229
V N++I+G+ G + +S+ LF M + G P ++T G++ + ++GQ +H
Sbjct: 215 SVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHA 274
Query: 230 FCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGK 289
+ + F V + ++ Y++ + + +F+ + D V+++ +I+ YSQ Y
Sbjct: 275 LSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEA 334
Query: 290 ALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349
+L++FR++ G A++L+ AA +++ G +H + + + V ++LVD
Sbjct: 335 SLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVD 394
Query: 350 MYSKCGYLGLGIQVFETMSERNIITYNSVILGL---GLHGFTYQAFEFFRDIIEKGLNPD 406
MY+KC +F+++ +R +++ ++I G GLHG + F R L D
Sbjct: 395 MYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRG---SNLRAD 451
Query: 407 ESTFSALLCA 416
+STF+ +L A
Sbjct: 452 QSTFATVLKA 461
Score = 119 bits (297), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/449 (24%), Positives = 190/449 (42%), Gaps = 54/449 (12%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALA 82
++LHAL RD +++ Y+ ++ + R+LFD+ P+ +N +I +Y+ A
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329
Query: 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSI-- 140
++ + F+ + NF +A + + S L R +H A+++ DSI
Sbjct: 330 DQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATA--DSILH 387
Query: 141 TSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG 200
++LV Y+K + +EA +F + V ++ISG+ G L+LF M
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSN 447
Query: 201 KTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAY 260
D+ T ++ + L +G+ +H F ++S + S LV MYA+C + A
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 507
Query: 261 HVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA 320
VF + + V+W+ALI+ ++ GD A+ F K+ G + D V I VL A
Sbjct: 508 QVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTAC---- 563
Query: 321 NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIIT-----Y 375
S CG++ G + F+ MS IT Y
Sbjct: 564 -------------------------------SHCGFVEQGTEYFQAMSPIYGITPKKKHY 592
Query: 376 NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE 435
++ LG +G +A + + E PDE +S++L AC ++ + + R E
Sbjct: 593 ACMLDLLGRNGRFAEAEKL---MDEMPFEPDEIMWSSVLNAC----RIHKNQSLAERAAE 645
Query: 436 EYGIQAKTEH---YIYMVKLLGLAGNLEE 461
+ K Y+ M + AG E+
Sbjct: 646 KLFSMEKLRDAAAYVSMSNIYAAAGEWEK 674
Score = 102 bits (254), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 136/297 (45%), Gaps = 4/297 (1%)
Query: 137 RDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196
+++++++ +++ + K + A +FD + D +V ++ +A +D++ +LF M
Sbjct: 77 KNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136
Query: 197 LRLGKT--PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDY--VSSVLVSMYAR 252
R PD T L+ G + + +H F +K FD+ + VS+VL+ Y
Sbjct: 137 CRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCE 196
Query: 253 CNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASV 312
++ A +F + D VT++ LITGY + G Y ++++ F K+ G + + V
Sbjct: 197 VRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGV 256
Query: 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI 372
L A + G +H + GF V + ++D YSK + +F+ M E +
Sbjct: 257 LKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDF 316
Query: 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREI 429
++YN VI + FFR++ G + F+ +L + + GR++
Sbjct: 317 VSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQL 373
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 127/283 (44%), Gaps = 20/283 (7%)
Query: 9 VLELSKSHQSLSRTKELH--ALVAKA-SLLRDPFYATKLVRLYALNNVLPSARILFDKTP 65
+L ++ + SL ++LH AL+A A S+L LV +YA + A ++F P
Sbjct: 357 MLSIAANLSSLQMGRQLHCQALLATADSILH---VGNSLVDMYAKCEMFEEAELIFKSLP 413
Query: 66 QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRF 125
QR+ W ++I Y LF + + L+ D T+A + +A + + L +
Sbjct: 414 QRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQ 473
Query: 126 VHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGF 185
+H I SG + + S LV Y+K I +A++VF+ + D + V N++IS A G
Sbjct: 474 LHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGD 533
Query: 186 WDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVG-------QGIHGFCLKSSFDS 238
+ ++ F M+ G PD +++G+++ + G I+G K
Sbjct: 534 GEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKH-- 591
Query: 239 YDYVSSVLVSMYARCNCMNSAYHVFNSL-FHPDLVTWSALITG 280
+ ++ + R A + + + F PD + WS+++
Sbjct: 592 ----YACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 630
>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350
OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1
Length = 677
Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 167/534 (31%), Positives = 273/534 (51%), Gaps = 4/534 (0%)
Query: 25 LHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHR 84
+H + ++ RD + L+ +Y + AR +FD R V WN++I Y
Sbjct: 139 VHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGY 198
Query: 85 FNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSA 144
NDA +F ++ + D+ T + C DL R VH LG +A
Sbjct: 199 MNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNA 258
Query: 145 LVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPD 204
LV Y K +DEA VFD + D++ MI+G+ G + +L+L M G P+
Sbjct: 259 LVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPN 318
Query: 205 EYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFN 264
T+ L+S + ++ G+ +HG+ ++ S + + L+SMYA+C ++ + VF+
Sbjct: 319 AVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFS 378
Query: 265 SLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324
WSA+I G Q AL F+++ + + + + S+L A A A++
Sbjct: 379 GASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQ 438
Query: 325 GAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER----NIITYNSVIL 380
IH Y+ + GF S+ ++ LV +YSKCG L ++F + E+ +++ + ++I
Sbjct: 439 AMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALIS 498
Query: 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ 440
G G+HG + A + F +++ G+ P+E TF++ L AC H GLV +G +F M E Y
Sbjct: 499 GYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTL 558
Query: 441 AKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500
A++ HY +V LLG AG L+EAY+ I ++P V GALL+ C + N L E+ A++
Sbjct: 559 ARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANK 618
Query: 501 LFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVSGSSN 554
LFE +P V+L+N YA GRW D+ K+R + + GLRK+ G S + SN
Sbjct: 619 LFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGLRKKPGHSTIEIRSN 672
Score = 202 bits (514), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 131/479 (27%), Positives = 235/479 (49%), Gaps = 7/479 (1%)
Query: 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSII 76
QS+S+TK LH V + +T L YAL + AR LF++ PQ S+ +N +I
Sbjct: 29 QSISKTKALHCHVITGGRVSGHILST-LSVTYALCGHITYARKLFEEMPQSSLLSYNIVI 87
Query: 77 RAYALAHRFNDAKSLFKNLLRTQLK--PDNFTYACITRACSENSDLPGLRFVHGGAIVSG 134
R Y ++DA S+F ++ +K PD +TY + +A E + VHG + S
Sbjct: 88 RMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSW 147
Query: 135 LGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFD 194
GRD +AL+ Y ++ A VFD + + D++ N+MISG+ G+ + +L +FD
Sbjct: 148 FGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFD 207
Query: 195 WMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN 254
WM+ D T+V ++ L +G+ +H + V + LV+MY +C
Sbjct: 208 WMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCG 267
Query: 255 CMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLA 314
M+ A VF+ + D++TW+ +I GY++ GD AL R + +G + + V IAS+++
Sbjct: 268 RMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVS 327
Query: 315 AAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIIT 374
+ V G +HG+ ++ +++ ++L+ MY+KC + L +VF S+ +
Sbjct: 328 VCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGP 387
Query: 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMT 434
++++I G + A F+ + + + P+ +T ++LL A + I +T
Sbjct: 388 WSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLT 447
Query: 435 EEYGIQAKTEHYIYMVKLLGLAGNLEEAYSF---IWSLPKPVDPAVSGALLSCCHIYGN 490
+ G + + +V + G LE A+ I K D + GAL+S ++G+
Sbjct: 448 KT-GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGD 505
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 162/544 (29%), Positives = 286/544 (52%), Gaps = 5/544 (0%)
Query: 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP--Q 66
+L + ++L+ T+++HA V + + L Y +N L A F++ P +
Sbjct: 10 LLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWK 69
Query: 67 RSVFLWNSIIRAYALAHR--FNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLR 124
R+ WN+I+ Y+ + ++D L+ + R D+F +AC L
Sbjct: 70 RNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGI 129
Query: 125 FVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCG 184
+HG A+ +GL +D + +LV Y++L ++ A KVFD + + VL ++ G+
Sbjct: 130 LIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYS 189
Query: 185 FWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSF-DSYDYVS 243
+ +LF M G D TL+ L+ VG+ +HG ++ SF D DY+
Sbjct: 190 KDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQ 249
Query: 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKK 303
+ ++ MY +C +++A +F + ++V W+ LI+G+++ +A FR++ +
Sbjct: 250 ASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESIL 309
Query: 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQV 363
+ +A++L + + ++ G +HGY+I++G E+ + ++ +DMY++CG + + V
Sbjct: 310 PNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTV 369
Query: 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLV 423
F+ M ERN+I+++S+I G++G +A + F + + + P+ TF +LL AC H G V
Sbjct: 370 FDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNV 429
Query: 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLS 483
+G + F MT +YG+ + EHY MV LLG AG + EA SFI ++P + GALLS
Sbjct: 430 KEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLS 489
Query: 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543
C I+ DLA +A +L +P K + V+LSN YA+ G W+ V +R + G RK
Sbjct: 490 ACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMGIKGYRKH 549
Query: 544 AGVS 547
G S
Sbjct: 550 VGQS 553
>sp|O49680|PP324_ARATH Pentatricopeptide repeat-containing protein At4g19220,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E2 PE=3
SV=2
Length = 951
Score = 271 bits (694), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 165/512 (32%), Positives = 274/512 (53%), Gaps = 10/512 (1%)
Query: 44 LVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPD 103
++ +Y + A +LF T R + WNS+I A++ + AK+LFK ++ ++
Sbjct: 435 VIDMYGKCGLTTQAELLFKTTTHRDLVSWNSMISAFSQNGFTHKAKNLFKEVV-SEYSCS 493
Query: 104 NF---TYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIK 160
F T I +C + L + VH G G + +++++++ Y + A
Sbjct: 494 KFSLSTVLAILTSCDSSDSLIFGKSVHCWLQKLGFGDNMLSANSVINMYIGCRDLTSAFL 553
Query: 161 VFDGVSDP-DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTP-DEYTLVGLISGLWEP 218
+ +S+ DL NS+ISG A G +SL+ F M R GK D TL+G IS
Sbjct: 554 RLETMSETRDLTSWNSVISGCASSGHHLESLRAFQAMSREGKIRHDLITLLGTISASGNL 613
Query: 219 SLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALI 278
L+ G+ HG +KS + + + L++MY RC + SA VF + P+L +W+ +I
Sbjct: 614 GLVLQGRCFHGLAIKSLRELDTQLQNTLITMYGRCKDIESAVKVFGLISDPNLCSWNCVI 673
Query: 279 TGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFE 338
+ SQ + FR L ++ + + +L+A+ + + G H ++I+ GF+
Sbjct: 674 SALSQNKAGREVFQLFRNLKLE---PNEITFVGLLSASTQLGSTSYGMQAHCHLIRRGFQ 730
Query: 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDI 398
+ VS+ALVDMYS CG L G++VF +I +NSVI G HG +A E F+++
Sbjct: 731 ANPFVSAALVDMYSSCGMLETGMKVFRNSGVNSISAWNSVISAHGFHGMGEKAMELFKEL 790
Query: 399 IEKG-LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG 457
+ P++S+F +LL AC H G +++G + +M E++G++ TEH +++V +LG AG
Sbjct: 791 SSNSEMEPNKSSFISLLSACSHSGFIDEGLSYYKQMEEKFGVKPVTEHRVWIVDMLGRAG 850
Query: 458 NLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517
L EAY FI + +P V GALLS C+ +G++ L + VA LFE +P +Y + L+N
Sbjct: 851 KLREAYEFITGIGEPQKAGVWGALLSACNYHGDTKLGKEVAEVLFEMEPDNASYYISLAN 910
Query: 518 TYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
TY G W++ ++LR + DN L+K G S +
Sbjct: 911 TYVGLGGWEEAVRLRKMVEDNALKKLPGYSVI 942
Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 189/383 (49%), Gaps = 4/383 (1%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALA 82
+ +H K LL+D ++KL+ Y L S+ LFD+ ++ V +WNS+I A
Sbjct: 107 RSVHCFALKCGLLQDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQN 166
Query: 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITS 142
R+ A LF ++ + D+ T A S +H AI +GL DS
Sbjct: 167 GRYIAAVGLFIEMIHKGNEFDSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLC 226
Query: 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT 202
+AL+ Y+K + A VF + D+V N++++ G KSLQ F M G+
Sbjct: 227 NALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQE 286
Query: 203 PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS--SVLVSMYARCNCMNSAY 260
D T +IS L++G+ +HG +KS + +VS + ++SMY++C +A
Sbjct: 287 ADTVTFSCVISACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAE 346
Query: 261 HVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KADPVLIASVLAAAAKS 319
VF L D+++ +A++ G++ G + +A ++ K + D + S+ +
Sbjct: 347 TVFEELVCRDVISSNAILNGFAANGMFEEAFGILNQMQSVDKIQPDIATVVSITSICGDL 406
Query: 320 ANVWPGAVIHGYVIQHGFELSVM-VSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSV 378
+ G +HGY ++ + + V ++++DMY KCG +F+T + R+++++NS+
Sbjct: 407 SFSREGRAVHGYTVRMEMQSRALEVINSVIDMYGKCGLTTQAELLFKTTTHRDLVSWNSM 466
Query: 379 ILGLGLHGFTYQAFEFFRDIIEK 401
I +GFT++A F++++ +
Sbjct: 467 ISAFSQNGFTHKAKNLFKEVVSE 489
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 158/310 (50%), Gaps = 5/310 (1%)
Query: 124 RFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC 183
R VH A+ GL +D TSS L+T Y + + + +FD + + D+++ NSMI+
Sbjct: 107 RSVHCFALKCGLLQDLATSSKLLTFYGRTGELVSSSCLFDELKEKDVIVWNSMITALNQN 166
Query: 184 GFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS 243
G + ++ LF M+ G D TL+ S L L +H +++ +
Sbjct: 167 GRYIAAVGLFIEMIHKGNEFDSTTLLLAASALSSLHLSRKCSMLHCLAIETGLVGDSSLC 226
Query: 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKK 303
+ L+++YA+ ++SA VF + H D+V+W+ ++T G K+L YF+ + G++
Sbjct: 227 NALMNLYAKGENLSSAECVFTHMEHRDIVSWNTIMTKCLANGHPRKSLQYFKSMTGSGQE 286
Query: 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF--ELSVMVSSALVDMYSKCGYLGLGI 361
AD V + V++A + + G +HG VI+ G+ E V V ++++ MYSKCG
Sbjct: 287 ADTVTFSCVISACSSIEELTLGESLHGLVIKSGYSPEAHVSVGNSIISMYSKCGDTEAAE 346
Query: 362 QVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDI--IEKGLNPDESTFSALLCACCH 419
VFE + R++I+ N+++ G +G +AF + ++K + PD +T ++ C
Sbjct: 347 TVFEELVCRDVISSNAILNGFAANGMFEEAFGILNQMQSVDK-IQPDIATVVSITSICGD 405
Query: 420 GGLVNDGREI 429
+GR +
Sbjct: 406 LSFSREGRAV 415
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 110/270 (40%), Gaps = 16/270 (5%)
Query: 25 LHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHR 84
H L K+ D L+ +Y + SA +F ++ WN +I A +
Sbjct: 622 FHGLAIKSLRELDTQLQNTLITMYGRCKDIESAVKVFGLISDPNLCSWNCVISALSQNKA 681
Query: 85 FNDAKSLFKNLLRTQLKPDNFTYACITRACSE-NSDLPGLRFVHGGAIVSGLGRDSITSS 143
+ LF+NL +L+P+ T+ + A ++ S G++ H I G + S+
Sbjct: 682 GREVFQLFRNL---KLEPNEITFVGLLSASTQLGSTSYGMQ-AHCHLIRRGFQANPFVSA 737
Query: 144 ALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGK-T 202
ALV YS +++ +KVF + NS+IS G +K+++LF + +
Sbjct: 738 ALVDMYSSCGMLETGMKVFRNSGVNSISAWNSVISAHGFHGMGEKAMELFKELSSNSEME 797
Query: 203 PDEYTLVGLISGLWEPSLLSVG-----QGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMN 257
P++ + + L+S + G Q F +K + ++ V M R +
Sbjct: 798 PNKSSFISLLSACSHSGFIDEGLSYYKQMEEKFGVKPVTEHRVWI----VDMLGRAGKLR 853
Query: 258 SAYHVFNSLFHPDLV-TWSALITGYSQQGD 286
AY + P W AL++ + GD
Sbjct: 854 EAYEFITGIGEPQKAGVWGALLSACNYHGD 883
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 12 LSKSHQ--SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSV 69
LS S Q S S + H + + +PF + LV +Y+ +L + +F + S+
Sbjct: 705 LSASTQLGSTSYGMQAHCHLIRRGFQANPFVSAALVDMYSSCGMLETGMKVFRNSGVNSI 764
Query: 70 FLWNSIIRAYALAHRFNDAKSLFKNL-LRTQLKPDNFTYACITRACS 115
WNS+I A+ A LFK L ++++P+ ++ + ACS
Sbjct: 765 SAWNSVISAHGFHGMGEKAMELFKELSSNSEMEPNKSSFISLLSACS 811
>sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2
SV=1
Length = 820
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 167/523 (31%), Positives = 277/523 (52%), Gaps = 11/523 (2%)
Query: 35 LRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKN 94
++D F + + +YA + S+R +FD +R++ +WN++I Y ++ LF
Sbjct: 248 VKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIELFLE 307
Query: 95 LLRT-QLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD--SITSSALVTAYSK 151
+ + ++ D TY A S + R HG VS R+ + ++L+ YS+
Sbjct: 308 AIGSKEIVSDEVTYLLAASAVSALQQVELGRQFHG--FVSKNFRELPIVIVNSLMVMYSR 365
Query: 152 LSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGL 211
+ ++ VF + + D+V N+MIS F G D+ L L M + G D T+ L
Sbjct: 366 CGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTAL 425
Query: 212 ISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVF--NSLFHP 269
+S +G+ H F ++ ++ ++S L+ MY++ + + +F +
Sbjct: 426 LSAASNLRNKEIGKQTHAFLIRQGIQ-FEGMNSYLIDMYSKSGLIRISQKLFEGSGYAER 484
Query: 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIH 329
D TW+++I+GY+Q G K FRK+ Q + + V +AS+L A ++ +V G +H
Sbjct: 485 DQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLH 544
Query: 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTY 389
G+ I+ + +V V+SALVDMYSK G + +F ERN +TY ++ILG G HG
Sbjct: 545 GFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGE 604
Query: 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYM 449
+A F + E G+ PD TF A+L AC + GL+++G +IF M E Y IQ +EHY +
Sbjct: 605 RAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCI 664
Query: 450 VKLLGLAGNLEEAYSFIWSLPKPVDPA-VSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508
+LG G + EAY F+ L + + A + G+LL C ++G +LAE V+ +L + D K
Sbjct: 665 TDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSERLAKFDKGK 724
Query: 509 G--AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
Y+V+LSN YAE+ +W V K+R + + GL+KE G S +
Sbjct: 725 NFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGI 767
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 199/383 (51%), Gaps = 18/383 (4%)
Query: 58 RILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKP------DNFTYACIT 111
R +FD +++V WN++I Y R +A F ++R ++KP + F I+
Sbjct: 168 RKVFDNMRRKNVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSIS 227
Query: 112 RACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLV 171
R+ + + GL G V +D S+ ++ Y++L I+ + +VFD + ++
Sbjct: 228 RSIKKANVFYGLMLKLGDEYV----KDLFVVSSAISMYAELGDIESSRRVFDSCVERNIE 283
Query: 172 LCNSMISGFAHCGFWDKSLQLFDWMLRLGK---TPDEYTLVGLISGLWEPSLLSVGQGIH 228
+ N+MI + +S++LF + +G DE T + S + + +G+ H
Sbjct: 284 VWNTMIGVYVQNDCLVESIELF--LEAIGSKEIVSDEVTYLLAASAVSALQQVELGRQFH 341
Query: 229 GFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYG 288
GF K+ + + + L+ MY+RC ++ ++ VF S+ D+V+W+ +I+ + Q G
Sbjct: 342 GFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDD 401
Query: 289 KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALV 348
+ L ++ QG K D + + ++L+AA+ N G H ++I+ G + M +S L+
Sbjct: 402 EGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGM-NSYLI 460
Query: 349 DMYSKCGYLGLGIQVFE--TMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD 406
DMYSK G + + ++FE +ER+ T+NS+I G +G T + F FR ++E+ + P+
Sbjct: 461 DMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPN 520
Query: 407 ESTFSALLCACCHGGLVNDGREI 429
T +++L AC G V+ G+++
Sbjct: 521 AVTVASILPACSQIGSVDLGKQL 543
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/373 (26%), Positives = 178/373 (47%), Gaps = 15/373 (4%)
Query: 57 ARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQ--LKPDNFTYACITRAC 114
AR LFD P+ + LWN+II + + ++A + + +T D +TY+ +AC
Sbjct: 58 ARQLFDAIPKPTTVLWNTIIIGFICNNLPHEALLFYSRMKKTAPFTNCDAYTYSSTLKAC 117
Query: 115 SENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAY-SKLSL-----IDEAIKVFDGVSDP 168
+E +L + VH I + ++L+ Y S L+ D KVFD +
Sbjct: 118 AETKNLKAGKAVHCHLIRCLQNSSRVVHNSLMNMYVSCLNAPDCFEYDVVRKVFDNMRRK 177
Query: 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIH 228
++V N++IS + G ++ + F M+R+ P + V + + + +
Sbjct: 178 NVVAWNTLISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFY 237
Query: 229 GFCLKSSFDSYD---YVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQG 285
G LK D Y +V S +SMYA + S+ VF+S ++ W+ +I Y Q
Sbjct: 238 GLMLKLG-DEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQND 296
Query: 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA--NVWPGAVIHGYVIQHGFELSVMV 343
+++ F + + K+ + +LAA+A SA V G HG+V ++ EL +++
Sbjct: 297 CLVESIELFLEA-IGSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVI 355
Query: 344 SSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGL 403
++L+ MYS+CG + VF +M ER+++++N++I +G + ++ ++G
Sbjct: 356 VNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGF 415
Query: 404 NPDESTFSALLCA 416
D T +ALL A
Sbjct: 416 KIDYITVTALLSA 428
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 172/541 (31%), Positives = 277/541 (51%), Gaps = 17/541 (3%)
Query: 25 LHALVAKASLLRDPFYATK---------LVRLYALNNVLPSARILFDKTPQRSVFLWNSI 75
L++ + S R FY+T+ +V+ YA ++ + AR LFD+ PQ +N++
Sbjct: 52 LYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTL 111
Query: 76 IRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGL 135
I YA A A LFK + + + D FT + + AC + DL ++ +H ++ G
Sbjct: 112 ISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDL--IKQLHCFSVSGGF 169
Query: 136 GRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-PDLVLCNSMISGFAHCGFWDKSLQLFD 194
S ++A VT YSK L+ EA+ VF G+ + D V NSMI + K+L L+
Sbjct: 170 DSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYK 229
Query: 195 WMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN 254
M+ G D +TL +++ L L G+ HG +K+ F +V S L+ Y++C
Sbjct: 230 EMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCG 289
Query: 255 CMNSAY---HVFNSLFHPDLVTWSALITGYSQQGDYGK-ALYYFRKLNMQGKKADPVLIA 310
+ Y VF + PDLV W+ +I+GYS + + A+ FR++ G + D
Sbjct: 290 GCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFV 349
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQ-HGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE 369
V +A + ++ IHG I+ H + V++AL+ +Y K G L VF+ M E
Sbjct: 350 CVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPE 409
Query: 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREI 429
N +++N +I G HG +A ++ +++ G+ P++ TF A+L AC H G V++G+E
Sbjct: 410 LNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEY 469
Query: 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYG 489
F M E + I+ + EHY M+ LLG AG LEEA FI ++P ALL C +
Sbjct: 470 FNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHK 529
Query: 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
N LAE A++L P VML+N YA+ +W+++ +R + +RK+ G SW+
Sbjct: 530 NMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWI 589
Query: 550 S 550
Sbjct: 590 E 590
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
Query: 312 VLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERN 371
+L + +++ G +H ++ S +S+ V++YSKCG L F + E N
Sbjct: 14 LLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPN 73
Query: 372 IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFT 431
+ +YN ++ + A + F +I + PD +++ L+ D RE F
Sbjct: 74 VFSYNVIVKAYAKDSKIHIARQLFDEIPQ----PDTVSYNTLISG------YADARETFA 123
Query: 432 RMT 434
M
Sbjct: 124 AMV 126
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 269 bits (687), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 163/576 (28%), Positives = 297/576 (51%), Gaps = 36/576 (6%)
Query: 10 LELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALN---NVLPSARILFDKTPQ 66
L L + ++L + +HA + K L + +KL+ L+ LP A +F +
Sbjct: 37 LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96
Query: 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFV 126
++ +WN++ R +AL+ A L+ ++ L P+++T+ + ++C+++ + +
Sbjct: 97 PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156
Query: 127 HGGAIVSGLG-------------------------------RDSITSSALVTAYSKLSLI 155
HG + G RD ++ +AL+ Y+ I
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYI 216
Query: 156 DEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGL 215
+ A K+FD + D+V N+MISG+A G + ++L+LF M++ PDE T+V ++S
Sbjct: 217 ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSAC 276
Query: 216 WEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWS 275
+ + +G+ +H + F S + + L+ +Y++C + +A +F L + D+++W+
Sbjct: 277 AQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWN 336
Query: 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH 335
LI GY+ Y +AL F+++ G+ + V + S+L A A + G IH Y+ +
Sbjct: 337 TLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKR 396
Query: 336 --GFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFE 393
G + + ++L+DMY+KCG + QVF ++ +++ ++N++I G +HG +F+
Sbjct: 397 LKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFD 456
Query: 394 FFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453
F + + G+ PD+ TF LL AC H G+++ GR IF MT++Y + K EHY M+ LL
Sbjct: 457 LFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLL 516
Query: 454 GLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513
G +G +EA I + D + +LL C ++GN +L E A L + +P V
Sbjct: 517 GHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYV 576
Query: 514 MLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
+LSN YA GRW++V K R + D G++K G S +
Sbjct: 577 LLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSI 612
Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 162/346 (46%), Gaps = 33/346 (9%)
Query: 8 LVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQR 67
VL+ ++ +++H V K D + T L+ +Y N L A +FDK+P R
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR 198
Query: 68 -------------------------------SVFLWNSIIRAYALAHRFNDAKSLFKNLL 96
V WN++I YA + +A LFK+++
Sbjct: 199 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 258
Query: 97 RTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLID 156
+T ++PD T + AC+++ + R VH G G + +AL+ YSK ++
Sbjct: 259 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELE 318
Query: 157 EAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLW 216
A +F+ + D++ N++I G+ H + ++L LF MLR G+TP++ T++ ++
Sbjct: 319 TACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 378
Query: 217 EPSLLSVGQGIHGFCLK--SSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTW 274
+ +G+ IH + K + + + L+ MYA+C + +A+ VFNS+ H L +W
Sbjct: 379 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438
Query: 275 SALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA 320
+A+I G++ G + F ++ G + D + +L+A + S
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSG 484
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 268 bits (686), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 152/480 (31%), Positives = 256/480 (53%), Gaps = 2/480 (0%)
Query: 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAI 131
WN +R A F+++ SL++++LR+ PD F++ I ++C+ S + +H
Sbjct: 21 WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80
Query: 132 VSGLGRDSITSSALVTAYSKLSLIDEAIKVFD-GVSDPDLVLC-NSMISGFAHCGFWDKS 189
G + +AL++ Y K L+ +A KVF+ L +C N++ISG+ +
Sbjct: 81 KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140
Query: 190 LQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSM 249
+F M G + D T++GL+ P L +G+ +HG C+K DS V + ++M
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITM 200
Query: 250 YARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLI 309
Y +C + + +F+ + L+TW+A+I+GYSQ G L + ++ G DP +
Sbjct: 201 YMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTL 260
Query: 310 ASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE 369
SVL++ A G + V +GF +V VS+A + MY++CG L VF+ M
Sbjct: 261 VSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPV 320
Query: 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREI 429
++++++ ++I G+HG F D+I++G+ PD + F +L AC H GL + G E+
Sbjct: 321 KSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL 380
Query: 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYG 489
F M EY ++ EHY +V LLG AG L+EA FI S+P D AV GALL C I+
Sbjct: 381 FRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHK 440
Query: 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
N D+AE+ ++ E +P Y V++SN Y++ + + ++R + + RK+ G S+V
Sbjct: 441 NVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYV 500
Score = 132 bits (332), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 175/386 (45%), Gaps = 12/386 (3%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVF--LWNSIIRAYA 80
++LH V K +PF T L+ +Y ++ AR +F++ PQ S +N++I Y
Sbjct: 73 QQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYT 132
Query: 81 LAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSI 140
+ DA +F+ + T + D+ T + C+ L R +HG + GL +
Sbjct: 133 ANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVA 192
Query: 141 TSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG 200
++ +T Y K ++ ++FD + L+ N++ISG++ G L+L++ M G
Sbjct: 193 VLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSG 252
Query: 201 KTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAY 260
PD +TLV ++S +G + + F +VS+ +SMYARC + A
Sbjct: 253 VCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKAR 312
Query: 261 HVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA 320
VF+ + LV+W+A+I Y G L F + +G + D + VL+A + S
Sbjct: 313 AVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSG 372
Query: 321 NVWPG-----AVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS-ERNIIT 374
G A+ Y ++ G E S LVD+ + G L ++ E+M E +
Sbjct: 373 LTDKGLELFRAMKREYKLEPGPEH----YSCLVDLLGRAGRLDEAMEFIESMPVEPDGAV 428
Query: 375 YNSVILGLGLHGFTYQAFEFFRDIIE 400
+ +++ +H A F +IE
Sbjct: 429 WGALLGACKIHKNVDMAELAFAKVIE 454
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 268 bits (685), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 164/543 (30%), Positives = 277/543 (51%), Gaps = 4/543 (0%)
Query: 14 KSHQSLSRT---KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVF 70
K++ +L R + +H LV K+ + D A+ LV +YA N+ ++ +FD+ P+R V
Sbjct: 115 KAYGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVA 174
Query: 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGA 130
WN++I + + A LF + + +P++ + ACS L + +H
Sbjct: 175 SWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKC 234
Query: 131 IVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSL 190
+ G D +SALV Y K ++ A +VF + LV NSMI G+ G +
Sbjct: 235 VKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCV 294
Query: 191 QLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMY 250
++ + M+ G P + TL ++ L G+ IHG+ ++S ++ YV+ L+ +Y
Sbjct: 295 EILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLY 354
Query: 251 ARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA 310
+C N A VF+ +W+ +I+ Y G++ KA+ + ++ G K D V
Sbjct: 355 FKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFT 414
Query: 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER 370
SVL A ++ A + G IH + + E ++ SAL+DMYSKCG ++F ++ ++
Sbjct: 415 SVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKK 474
Query: 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430
+++++ +I G HG +A F ++ + GL PD T A+L AC H GL+++G + F
Sbjct: 475 DVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFF 534
Query: 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPA-VSGALLSCCHIYG 489
++M +YGI+ EHY M+ +LG AG L EAY I P+ D A + L S C ++
Sbjct: 535 SQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHL 594
Query: 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
L + +A L EN P + ++L N YA WD ++R + + GLRK+ G SW+
Sbjct: 595 EHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWI 654
Query: 550 SGS 552
S
Sbjct: 655 EMS 657
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/469 (29%), Positives = 241/469 (51%), Gaps = 9/469 (1%)
Query: 8 LVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQR 67
L+ E + S +SL R K +H + L RD L+ +Y SAR +F+ R
Sbjct: 9 LLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENFDIR 68
Query: 68 S-VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQL-KPDNFTYACITRACSE-NSDLPGLR 124
S V++WNS++ Y+ F+D +FK LL + PD+FT+ + +A + G R
Sbjct: 69 SDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLG-R 127
Query: 125 FVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCG 184
+H + SG D + +S+LV Y+K +L + +++VFD + + D+ N++IS F G
Sbjct: 128 MIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSG 187
Query: 185 FWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSS 244
+K+L+LF M G P+ +L IS L G+ IH C+K F+ +YV+S
Sbjct: 188 EAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNS 247
Query: 245 VLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKA 304
LV MY +C+C+ A VF + LV W+++I GY +GD + ++ ++G +
Sbjct: 248 ALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRP 307
Query: 305 DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVF 364
+ S+L A ++S N+ G IHGYVI+ + V+ +L+D+Y KCG L VF
Sbjct: 308 SQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVF 367
Query: 365 ETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424
+ ++N +I G ++A E + ++ G+ PD TF+++L AC +
Sbjct: 368 SKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALE 427
Query: 425 DGREIFTRMTEEYGIQAKTEHYIY--MVKLLGLAGNLEEAYSFIWSLPK 471
G++I ++E + +T+ + ++ + GN +EA+ S+PK
Sbjct: 428 KGKQIHLSISES---RLETDELLLSALLDMYSKCGNEKEAFRIFNSIPK 473
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 268 bits (684), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 159/544 (29%), Positives = 271/544 (49%), Gaps = 33/544 (6%)
Query: 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ 66
FL+ ++ ++ + + +H+ + L + KL+R YA + SAR +FD+ P+
Sbjct: 43 FLLGQVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPE 102
Query: 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFV 126
R+V + N +IR+Y + + +F + ++PD++T+ C+ +ACS + + R +
Sbjct: 103 RNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKI 162
Query: 127 HGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFW 186
HG A GL + LV+ Y K + EA V D +S D+V NS++ G+A +
Sbjct: 163 HGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRF 222
Query: 187 DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVL 246
D +L++ M + + D T+ L+ + + +V
Sbjct: 223 DDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV----------------------- 259
Query: 247 VSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP 306
MY + +F + LV+W+ +I Y + +A+ + ++ G + D
Sbjct: 260 --MYVK--------DMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDA 309
Query: 307 VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366
V I SVL A ++ + G IHGY+ + ++++ +AL+DMY+KCG L VFE
Sbjct: 310 VSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFEN 369
Query: 367 MSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426
M R+++++ ++I G G A F + + GL PD F L AC H GL+ +G
Sbjct: 370 MKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEG 429
Query: 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCH 486
R F MT+ Y I + EH MV LLG AG ++EAY FI + + V GALL C
Sbjct: 430 RSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACR 489
Query: 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGV 546
++ ++D+ + A +LF+ P + Y V+LSN YA+ GRW++V +R+ + GL+K G
Sbjct: 490 VHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGA 549
Query: 547 SWVS 550
S V
Sbjct: 550 SNVE 553
>sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070
OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
Length = 786
Score = 266 bits (680), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 171/583 (29%), Positives = 282/583 (48%), Gaps = 68/583 (11%)
Query: 35 LRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKN 94
LR F ++ Y+ + S FD+ PQR W ++I Y +++ A + +
Sbjct: 77 LRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGD 136
Query: 95 LLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSK--- 151
+++ ++P FT + + + + + VH + GL + S++L+ Y+K
Sbjct: 137 MVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGD 196
Query: 152 ----------------------------LSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC 183
+ +D A+ F+ +++ D+V NSMISGF
Sbjct: 197 PMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQR 256
Query: 184 GFWDKSLQLFDWMLRLGK-TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYV 242
G+ ++L +F MLR +PD +TL ++S L +G+ IH + + FD V
Sbjct: 257 GYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIV 316
Query: 243 SSVLVSMYARCNC---------------------------------MNSAYHVFNSLFHP 269
+ L+SMY+RC MN A ++F SL
Sbjct: 317 LNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDR 376
Query: 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIH 329
D+V W+A+I GY Q G YG+A+ FR + G++ + +A++L+ A+ A++ G IH
Sbjct: 377 DVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIH 436
Query: 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS-ERNIITYNSVILGLGLHGFT 388
G ++ G SV VS+AL+ MY+K G + + F+ + ER+ +++ S+I+ L HG
Sbjct: 437 GSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHA 496
Query: 389 YQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIY 448
+A E F ++ +GL PD T+ + AC H GLVN GR+ F M + I HY
Sbjct: 497 EEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYAC 556
Query: 449 MVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508
MV L G AG L+EA FI +P D G+LLS C ++ N DL ++ A +L +P
Sbjct: 557 MVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPEN 616
Query: 509 -GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550
GAY L+N Y+ G+W++ K+R + D ++KE G SW+
Sbjct: 617 SGAYSA-LANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/386 (23%), Positives = 165/386 (42%), Gaps = 96/386 (24%)
Query: 124 RFVHGGAIVSGLG-------------------------------RDSITSSALVTAYSKL 152
+ VH I SGL R + + + +++AYSK
Sbjct: 34 QLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKR 93
Query: 153 SLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLI 212
+D + FD + D V +MI G+ + G + K++++ M++ G P ++TL ++
Sbjct: 94 GDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVL 153
Query: 213 SGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARC------------------- 253
+ + + G+ +H F +K VS+ L++MYA+C
Sbjct: 154 ASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDIS 213
Query: 254 ------------NCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQG 301
M+ A F + D+VTW+++I+G++Q+G +AL F K+
Sbjct: 214 SWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDS 273
Query: 302 -KKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC------ 354
D +ASVL+A A + G IH +++ GF++S +V +AL+ MYS+C
Sbjct: 274 LLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETA 333
Query: 355 ----------------------GYLGLG-----IQVFETMSERNIITYNSVILGLGLHGF 387
GY+ LG +F ++ +R+++ + ++I+G HG
Sbjct: 334 RRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGS 393
Query: 388 TYQAFEFFRDIIEKGLNPDESTFSAL 413
+A FR ++ G P+ T +A+
Sbjct: 394 YGEAINLFRSMVGGGQRPNSYTLAAM 419
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/391 (24%), Positives = 175/391 (44%), Gaps = 41/391 (10%)
Query: 34 LLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSL-- 91
++RD ++ L+ + A F++ +R + WNS+I + R D ++L
Sbjct: 208 VVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFN--QRGYDLRALDI 265
Query: 92 FKNLLR-TQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYS 150
F +LR + L PD FT A + AC+ L + +H + +G I +AL++ YS
Sbjct: 266 FSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYS 325
Query: 151 ---------------------------------KLSLIDEAIKVFDGVSDPDLVLCNSMI 177
KL +++A +F + D D+V +MI
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMI 385
Query: 178 SGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFD 237
G+ G + +++ LF M+ G+ P+ YTL ++S + LS G+ IHG +KS
Sbjct: 386 VGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEI 445
Query: 238 SYDYVSSVLVSMYARCNCMNSAYHVFNSL-FHPDLVTWSALITGYSQQGDYGKALYYFRK 296
VS+ L++MYA+ + SA F+ + D V+W+++I +Q G +AL F
Sbjct: 446 YSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFET 505
Query: 297 LNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSA-LVDMYSKCG 355
+ M+G + D + V +A + V G + + + A +VD++ + G
Sbjct: 506 MLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAG 565
Query: 356 YLGLGIQVFETMS-ERNIITYNSVILGLGLH 385
L + E M E +++T+ S++ +H
Sbjct: 566 LLQEAQEFIEKMPIEPDVVTWGSLLSACRVH 596
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 3/160 (1%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP-QRSVFLWNSIIRAYAL 81
K++H K+ + + L+ +YA + SA FD +R W S+I A A
Sbjct: 433 KQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQ 492
Query: 82 AHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL-PGLRFVHGGAIVSGLGRDSI 140
+A LF+ +L L+PD+ TY + AC+ + G ++ V +
Sbjct: 493 HGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLS 552
Query: 141 TSSALVTAYSKLSLIDEAIKVFDGVS-DPDLVLCNSMISG 179
+ +V + + L+ EA + + + +PD+V S++S
Sbjct: 553 HYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSA 592
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 93/234 (39%), Gaps = 63/234 (26%)
Query: 318 KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGY--------------------- 356
KS + ++H VI+ G SV + + L+++YSK GY
Sbjct: 26 KSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNT 85
Query: 357 ----------LGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD 406
+ + F+ + +R+ +++ ++I+G G ++A D++++G+ P
Sbjct: 86 VLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPT 145
Query: 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFI 466
+ T + +L + + G+++ + ++VK LGL GN+ + S +
Sbjct: 146 QFTLTNVLASVAATRCMETGKKVHS----------------FIVK-LGLRGNVSVSNSLL 188
Query: 467 WSLPKPVDPAVS---------------GALLSCCHIYGNSDLAEIVAHQLFEND 505
K DP ++ A+++ G DLA Q+ E D
Sbjct: 189 NMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242
>sp|Q9LSL8|PP446_ARATH Pentatricopeptide repeat-containing protein At5g65570
OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1
Length = 738
Score = 266 bits (679), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 265/496 (53%), Gaps = 5/496 (1%)
Query: 57 ARILFDKTPQRSVFLWNSIIRAYALAHRFN-DAKSLFKNLLRTQLKPDNFTYACITRACS 115
AR +FD +R + WNS+I AY + HR + +A +++ ++ + PD +T + + +A S
Sbjct: 118 ARQVFDGMSERHIVTWNSLI-AYLIKHRRSKEAVEMYRLMITNNVLPDEYTLSSVFKAFS 176
Query: 116 ENSDLPGLRFVHGGAIVSGLGRDSI-TSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCN 174
+ S + HG A++ GL ++ SALV Y K EA V D V + D+VL
Sbjct: 177 DLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLIT 236
Query: 175 SMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKS 234
++I G++ G ++++ F ML P+EYT ++ + G+ IHG +KS
Sbjct: 237 ALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKS 296
Query: 235 SFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYF 294
F+S + L++MY RC+ ++ + VF + +P+ V+W++LI+G Q G AL F
Sbjct: 297 GFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQNGREEMALIEF 356
Query: 295 RKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC 354
RK+ K + ++S L + A G IHG V ++GF+ S L+D+Y KC
Sbjct: 357 RKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKC 416
Query: 355 GYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALL 414
G + VF+T+SE ++I+ N++I +GF +A + F +I GL P++ T ++L
Sbjct: 417 GCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFERMINLGLQPNDVTVLSVL 476
Query: 415 CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVD 474
AC + LV +G E+F ++ I +HY MV LLG AG LEEA + P D
Sbjct: 477 LACNNSRLVEEGCELFDSFRKD-KIMLTNDHYACMVDLLGRAGRLEEAEMLTTEVINP-D 534
Query: 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534
+ LLS C ++ ++AE + ++ E +P +++SN YA G+W+ V++++
Sbjct: 535 LVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSK 594
Query: 535 IVDNGLRKEAGVSWVS 550
+ D L+K +SWV
Sbjct: 595 MKDMKLKKNPAMSWVE 610
>sp|Q9SS97|PP205_ARATH Putative pentatricopeptide repeat-containing protein At3g01580
OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2
Length = 660
Score = 266 bits (679), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/522 (27%), Positives = 274/522 (52%), Gaps = 4/522 (0%)
Query: 25 LHALVAK-ASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAH 83
+H V K +L D + + L+ +Y + A +FD+ + + W+S++ +
Sbjct: 82 IHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEKNG 141
Query: 84 RFNDAKSLFKNL-LRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITS 142
A F+ + + + + PD T + AC++ S+ R VHG I G D
Sbjct: 142 SPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSNDLSLV 201
Query: 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT 202
++L+ Y+K EA+ +F +++ D++ +++I+ + G ++L +F+ M+ G
Sbjct: 202 NSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDDGTE 261
Query: 203 PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHV 262
P+ T++ ++ L G+ H ++ ++ VS+ LV MY +C AY V
Sbjct: 262 PNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALVDMYMKCFSPEEAYAV 321
Query: 263 FNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KADPVLIASVLAAAAKSAN 321
F+ + D+V+W ALI+G++ G +++ F + ++ + D +L+ VL + ++
Sbjct: 322 FSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLGSCSELGF 381
Query: 322 VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILG 381
+ H YVI++GF+ + + ++LV++YS+CG LG +VF ++ ++ + + S+I G
Sbjct: 382 LEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITG 441
Query: 382 LGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ 440
G+HG +A E F +++ + P+E TF ++L AC H GL+++G IF M +Y +
Sbjct: 442 YGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVNDYRLA 501
Query: 441 AKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500
EHY +V LLG G+L+ A +P P + G LL C I+ N ++AE VA +
Sbjct: 502 PNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAETVAKK 561
Query: 501 LFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542
LFE + Y +++SN Y G W++V KLR+ + G++K
Sbjct: 562 LFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKK 603
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/415 (27%), Positives = 207/415 (49%), Gaps = 16/415 (3%)
Query: 57 ARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSE 116
AR +F + +RS++ WN+++++ + ++ + F ++ R + KPDNFT +AC E
Sbjct: 13 ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72
Query: 117 NSDLPGLRFVHGGAIVSG-------LGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPD 169
LR V+ G ++ G LG D S+L+ Y K + EA+++FD + PD
Sbjct: 73 ------LREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPD 126
Query: 170 LVLCNSMISGFAHCGFWDKSLQLFDWMLRLGK-TPDEYTLVGLISGLWEPSLLSVGQGIH 228
+V +SM+SGF G ++++ F M+ TPD TL+ L+S + S +G+ +H
Sbjct: 127 IVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVH 186
Query: 229 GFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYG 288
GF ++ F + + + L++ YA+ A ++F + D+++WS +I Y Q G
Sbjct: 187 GFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAA 246
Query: 289 KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALV 348
+AL F + G + + + VL A A + ++ G H I+ G E V VS+ALV
Sbjct: 247 EALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKVSTALV 306
Query: 349 DMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRD-IIEKGLNPDE 407
DMY KC VF + ++++++ ++I G L+G +++ E F ++E PD
Sbjct: 307 DMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDA 366
Query: 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEA 462
+L +C G + + F +YG + +V+L G+L A
Sbjct: 367 ILMVKVLGSCSELGFLEQAK-CFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNA 420
Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/363 (26%), Positives = 185/363 (50%), Gaps = 5/363 (1%)
Query: 151 KLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVG 210
K S +A ++F ++ L N+++ + W++ L F M R + PD +TL
Sbjct: 6 KFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPV 65
Query: 211 LISGLWEPSLLSVGQGIHGFCLKS-SFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHP 269
+ E ++ G+ IHGF K + S YV S L+ MY +C M A +F+ L P
Sbjct: 66 ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125
Query: 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KADPVLIASVLAAAAKSANVWPGAVI 328
D+VTWS++++G+ + G +A+ +FR++ M D V + ++++A K +N G +
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCV 185
Query: 329 HGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFT 388
HG+VI+ GF + + ++L++ Y+K + +F+ ++E+++I++++VI +G
Sbjct: 186 HGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAA 245
Query: 389 YQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIY 448
+A F D+++ G P+ +T +L AC + GR+ + G++ + +
Sbjct: 246 AEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTH-ELAIRKGLETEVKVSTA 304
Query: 449 MVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLA-EIVAHQLFENDPR 507
+V + + EEAY+ +P+ D AL+S + G + + E + L EN+ R
Sbjct: 305 LVDMYMKCFSPEEAYAVFSRIPRK-DVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTR 363
Query: 508 KGA 510
A
Sbjct: 364 PDA 366
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 19 LSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRA 78
L + K H+ V K +PF LV LY+ L +A +F+ + +W S+I
Sbjct: 382 LEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWTSLITG 441
Query: 79 YALAHRFNDAKSLFKNLLR-TQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGL 135
Y + + A F ++++ +++KP+ T+ I ACS H G I GL
Sbjct: 442 YGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACS-----------HAGLIHEGL 488
>sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protein At3g50420
OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1
Length = 794
Score = 265 bits (677), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 163/515 (31%), Positives = 263/515 (51%), Gaps = 3/515 (0%)
Query: 42 TKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLK 101
T ++ +Y+ L SAR +FD R WN++I + D F+N+L + +
Sbjct: 238 TSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVD 297
Query: 102 PDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKV 161
P FTY+ + CS+ + +H IVS D +AL+ Y + EA V
Sbjct: 298 PTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYV 357
Query: 162 FDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGK-TPDEYTLVGLISGLWEPSL 220
F + +P+LV NS+ISG + GF ++++ ++ +LR+ PDEYT IS EP
Sbjct: 358 FGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPER 417
Query: 221 LSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITG 280
G+ +HG K ++ +V + L+SMY + SA VF+ + D+V W+ +I G
Sbjct: 418 FVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVG 477
Query: 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELS 340
+S+ G+ A+ +F ++ + ++D ++SV+ A + A + G V H I+ GF+
Sbjct: 478 HSRLGNSELAVQFFIEMYREKNRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFDCV 537
Query: 341 VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIE 400
+ V ALVDMY K G +F S ++ +NS++ HG +A FF I+E
Sbjct: 538 MSVCGALVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILE 597
Query: 401 KGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460
G PD T+ +LL AC H G G+ ++ +M E+ GI+A +HY MV L+ AG ++
Sbjct: 598 NGFMPDAVTYLSLLAACSHRGSTLQGKFLWNQMKEQ-GIKAGFKHYSCMVNLVSKAGLVD 656
Query: 461 EAYSFIWSLPKPVDPA-VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519
EA I P + A + LLS C N + A Q+ + DP A ++LSN Y
Sbjct: 657 EALELIEQSPPGNNQAELWRTLLSACVNTRNLQIGLYAAEQILKLDPEDTATHILLSNLY 716
Query: 520 AEDGRWDDVMKLRDDIVDNGLRKEAGVSWVSGSSN 554
A +GRW+DV ++R I K+ G+SW+ ++N
Sbjct: 717 AVNGRWEDVAEMRRKIRGLASSKDPGLSWIEVNNN 751
Score = 172 bits (435), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 131/504 (25%), Positives = 243/504 (48%), Gaps = 10/504 (1%)
Query: 9 VLELSKSHQS---LSRTKELHALVAKA---SLLRDPFYATKLVRLYALNNVLPSARILFD 62
V+EL++ S L R +++HALV A + P+ L+ +Y L AR +FD
Sbjct: 97 VVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISMYVRCGSLEQARKVFD 156
Query: 63 KTPQRSVFLWNSIIRAYALAHRFND-AKSLFKNLLRTQLKPDNFTYACITRACSENSDLP 121
K P R+V +N++ AY+ F A L ++ +KP++ T+ + + C+ D+
Sbjct: 157 KMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTSLVQVCAVLEDVL 216
Query: 122 GLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFA 181
++ I G + + ++++ YS ++ A ++FD V++ D V N+MI G
Sbjct: 217 MGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAVAWNTMIVGSL 276
Query: 182 HCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDY 241
+ L F ML G P ++T +++G + S+G+ IH + S +
Sbjct: 277 KNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARIIVSDSLADLP 336
Query: 242 VSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRK-LNMQ 300
+ + L+ MY C M A++VF + +P+LV+W+++I+G S+ G +A+ +R+ L M
Sbjct: 337 LDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAMLMYRRLLRMS 396
Query: 301 GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360
+ D ++ ++A A+ G ++HG V + G+E SV V + L+ MY K
Sbjct: 397 TPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESA 456
Query: 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHG 420
+VF+ M ER+++ + +I+G G + A +FF ++ + D + S+++ AC
Sbjct: 457 QKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSLSSVIGACSDM 516
Query: 421 GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGA 480
++ G E+F + G +V + G G E A + I+SL D +
Sbjct: 517 AMLRQG-EVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAET-IFSLASNPDLKCWNS 574
Query: 481 LLSCCHIYGNSDLAEIVAHQLFEN 504
+L +G + A Q+ EN
Sbjct: 575 MLGAYSQHGMVEKALSFFEQILEN 598
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/390 (23%), Positives = 173/390 (44%), Gaps = 11/390 (2%)
Query: 38 PFYATKLVRLYALNNVLPSARILFDKTPQRSV---FLWNSIIRAYALAHRFNDAKSLFKN 94
P+ L+ +Y + L AR +FDK PQR++ F +++ ++ + +
Sbjct: 22 PYANNNLISMYVRCSSLEQARKVFDKMPQRNIVTLFGLSAVFEYVSMGSSLHSQIIKLGS 81
Query: 95 LLRTQLKPDNFTYACI---TRACSENSDLPGLRFVHGGAIVSGLGRDSITSSA---LVTA 148
P N + + TR C + L R +H + +G G + + A L++
Sbjct: 82 FQMIFFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLISM 141
Query: 149 YSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFA-HCGFWDKSLQLFDWMLRLGKTPDEYT 207
Y + +++A KVFD + ++V N++ S ++ + F + L M P+ T
Sbjct: 142 YVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSST 201
Query: 208 LVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLF 267
L+ + +G ++ +K + V + ++ MY+ C + SA +F+ +
Sbjct: 202 FTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVN 261
Query: 268 HPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAV 327
+ D V W+ +I G + L +FR + M G + VL +K + G +
Sbjct: 262 NRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKL 321
Query: 328 IHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGF 387
IH +I + + +AL+DMY CG + VF + N++++NS+I G +GF
Sbjct: 322 IHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGF 381
Query: 388 TYQAFEFFRDIIEKGL-NPDESTFSALLCA 416
QA +R ++ PDE TFSA + A
Sbjct: 382 GEQAMLMYRRLLRMSTPRPDEYTFSAAISA 411
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 87/192 (45%)
Query: 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALA 82
K LH V K R F T L+ +Y N SA+ +FD +R V LW +I ++
Sbjct: 422 KLLHGQVTKLGYERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRL 481
Query: 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITS 142
A F + R + + D F+ + + ACS+ + L H AI +G
Sbjct: 482 GNSELAVQFFIEMYREKNRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVC 541
Query: 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT 202
ALV Y K + A +F S+PDL NSM+ ++ G +K+L F+ +L G
Sbjct: 542 GALVDMYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFM 601
Query: 203 PDEYTLVGLISG 214
PD T + L++
Sbjct: 602 PDAVTYLSLLAA 613
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 20/194 (10%)
Query: 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGY----------SQQGDYG 288
Y Y ++ L+SMY RC+ + A VF+ + ++VT L + SQ G
Sbjct: 21 YPYANNNLISMYVRCSSLEQARKVFDKMPQRNIVTLFGLSAVFEYVSMGSSLHSQIIKLG 80
Query: 289 K-ALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG---FELSVMVS 344
+ +F LN + V K A IH V+ G S +
Sbjct: 81 SFQMIFFMPLNEIASSVVELTRKCVSITVLKRAR-----QIHALVLTAGAGAATESPYAN 135
Query: 345 SALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLH-GFTYQAFEFFRDIIEKGL 403
+ L+ MY +CG L +VF+ M RN+++YN++ + F AF + + +
Sbjct: 136 NNLISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYV 195
Query: 404 NPDESTFSALLCAC 417
P+ STF++L+ C
Sbjct: 196 KPNSSTFTSLVQVC 209
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 164/547 (29%), Positives = 285/547 (52%), Gaps = 8/547 (1%)
Query: 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ 66
L+L + SL+ +++H + K L + L+ +Y AR +FD +
Sbjct: 319 ILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSE 378
Query: 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLP-GL-- 123
R + WNS+I A +A LF LLR LKPD +T + +A S LP GL
Sbjct: 379 RDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS---LPEGLSL 435
Query: 124 -RFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAH 182
+ VH AI DS S+AL+ AYS+ + EA +F+ + DLV N+M++G+
Sbjct: 436 SKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQ 494
Query: 183 CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYV 242
K+L+LF M + G+ D++TL + ++ G+ +H + +KS +D +V
Sbjct: 495 SHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 554
Query: 243 SSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK 302
SS ++ MY +C M++A F+S+ PD V W+ +I+G + G+ +A + F ++ + G
Sbjct: 555 SSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGV 614
Query: 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQ 362
D IA++ A++ + G IH ++ V ++LVDMY+KCG +
Sbjct: 615 LPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYC 674
Query: 363 VFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGL 422
+F+ + NI +N++++GL HG + + F+ + G+ PD+ TF +L AC H GL
Sbjct: 675 LFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGL 734
Query: 423 VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALL 482
V++ + M +YGI+ + EHY + LG AG +++A + I S+ ++ LL
Sbjct: 735 VSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLL 794
Query: 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542
+ C + G+++ + VA +L E +P + V+LSN YA +WD++ R + + ++K
Sbjct: 795 AACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKK 854
Query: 543 EAGVSWV 549
+ G SW+
Sbjct: 855 DPGFSWI 861
Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 103/369 (27%), Positives = 183/369 (49%), Gaps = 2/369 (0%)
Query: 62 DKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLP 121
D + + N + Y + +++ F +++ + ++ D T+ + + L
Sbjct: 273 DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLA 332
Query: 122 GLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFA 181
+ VH A+ GL S++L+ Y KL A VFD +S+ DL+ NS+I+G A
Sbjct: 333 LGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392
Query: 182 HCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWE-PSLLSVGQGIHGFCLKSSFDSYD 240
G +++ LF +LR G PD+YT+ ++ P LS+ + +H +K + S
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDS 452
Query: 241 YVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ 300
+VS+ L+ Y+R CM A +F + DLV W+A++ GY+Q D K L F ++ Q
Sbjct: 453 FVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQ 511
Query: 301 GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360
G+++D +A+V + G +H Y I+ G++L + VSS ++DMY KCG +
Sbjct: 512 GERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAA 571
Query: 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHG 420
F+++ + + + ++I G +G +AF F + G+ PDE T + L A
Sbjct: 572 QFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCL 631
Query: 421 GLVNDGREI 429
+ GR+I
Sbjct: 632 TALEQGRQI 640
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/387 (26%), Positives = 169/387 (43%), Gaps = 41/387 (10%)
Query: 37 DPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYA-----LAHRFNDAKSL 91
+ F L+ +Y+ L AR +FDK P R + WNSI+ AYA + A L
Sbjct: 73 ERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFLL 132
Query: 92 FKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSK 151
F+ L + + T + + + C + + HG A GL D + ALV Y K
Sbjct: 133 FRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLK 192
Query: 152 LSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYT--LV 209
+ E +F+ + D+VL N M+ + GF ++++ L G P+E T L+
Sbjct: 193 FGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLL 252
Query: 210 GLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHP 269
ISG D + V +A N +S
Sbjct: 253 ARISG-------------------------DDSDAGQVKSFANGNDASSV---------S 278
Query: 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIH 329
+++ + ++ Y G Y L F + + D V +LA A K ++ G +H
Sbjct: 279 EIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVH 338
Query: 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTY 389
++ G +L + VS++L++MY K G VF+ MSER++I++NSVI G+ +G
Sbjct: 339 CMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEV 398
Query: 390 QAFEFFRDIIEKGLNPDESTFSALLCA 416
+A F ++ GL PD+ T +++L A
Sbjct: 399 EAVCLFMQLLRCGLKPDQYTMTSVLKA 425
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 103/469 (21%), Positives = 201/469 (42%), Gaps = 45/469 (9%)
Query: 22 TKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYAL 81
++ H K L D F A LV +Y + ++LF++ P R V LWN +++AY
Sbjct: 164 SESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLE 223
Query: 82 AHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLR-FVHGGAIVSGLGRDSI 140
+A L + L P+ T + R ++SD ++ F +G
Sbjct: 224 MGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGN----------- 272
Query: 141 TSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG 200
D S +++ N +S + H G + L+ F M+
Sbjct: 273 ----------------------DASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESD 310
Query: 201 KTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAY 260
D+ T + +++ + L++GQ +H LK D VS+ L++MY + A
Sbjct: 311 VECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFAR 370
Query: 261 HVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK-S 319
VF+++ DL++W+++I G +Q G +A+ F +L G K D + SVL AA+
Sbjct: 371 TVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLP 430
Query: 320 ANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVI 379
+ +H + I+ VS+AL+D YS+ + +FE + +++ +N+++
Sbjct: 431 EGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHN-FDLVAWNAMM 489
Query: 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439
G ++ + F + ++G D+ T + + C +N G+++ Y I
Sbjct: 490 AGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHA-----YAI 544
Query: 440 QAKTEHYIY----MVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSC 484
++ + ++ ++ + G++ A S+P P D A + + C
Sbjct: 545 KSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGC 593
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 5/209 (2%)
Query: 210 GLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHP 269
G + S L +G+ H L + ++ + L+SMY++C + A VF+ +
Sbjct: 44 GFLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDR 103
Query: 270 DLVTWSALITGYSQQGD-----YGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324
DLV+W++++ Y+Q + +A FR L + ++ +L S VW
Sbjct: 104 DLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWA 163
Query: 325 GAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGL 384
HGY + G + V+ ALV++Y K G + G +FE M R+++ +N ++
Sbjct: 164 SESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLE 223
Query: 385 HGFTYQAFEFFRDIIEKGLNPDESTFSAL 413
GF +A + GLNP+E T L
Sbjct: 224 MGFKEEAIDLSSAFHSSGLNPNEITLRLL 252
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI 372
L A S+++ G H ++ + + L+ MYSKCG L +VF+ M +R++
Sbjct: 46 LRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDL 105
Query: 373 ITYNSVILGLGLHGF-----TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLV 423
+++NS++ QAF FR + + + T S +L C H G V
Sbjct: 106 VSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV 161
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/458 (33%), Positives = 242/458 (52%), Gaps = 7/458 (1%)
Query: 96 LRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155
+ T++ ++ Y I RA + L+ VH IV+G GR + L+T I
Sbjct: 1 MTTKVAANSAAYEAIVRA---GPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAI 57
Query: 156 DEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGL 215
+F V PD L NS+I + + + ML +P YT +I
Sbjct: 58 AYTHLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSC 117
Query: 216 WEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWS 275
+ S L +G+G+H + S F YV + LV+ Y++C M A VF+ + +V W+
Sbjct: 118 ADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWN 177
Query: 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH 335
+L++G+ Q G +A+ F ++ G + D S+L+A A++ V G+ +H Y+I
Sbjct: 178 SLVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISE 237
Query: 336 GFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFF 395
G +L+V + +AL+++YS+CG +G +VF+ M E N+ + ++I G HG+ QA E F
Sbjct: 238 GLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELF 297
Query: 396 RDIIEK-GLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLG 454
+ + G P+ TF A+L AC H GLV +GR ++ RMT+ Y + EH++ MV +LG
Sbjct: 298 NKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLG 357
Query: 455 LAGNLEEAYSFIWSLP---KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511
AG L+EAY FI L K PA+ A+L C ++ N DL +A +L +P +
Sbjct: 358 RAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGH 417
Query: 512 KVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
VMLSN YA G+ D+V +RD ++ N LRK+ G S +
Sbjct: 418 HVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVI 455
Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/345 (27%), Positives = 172/345 (49%), Gaps = 10/345 (2%)
Query: 19 LSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRA 78
+ + +++HA + R TKL+ L + +LF P FL+NS+I++
Sbjct: 22 VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKS 81
Query: 79 YALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD 138
+ + ++ +L + + P N+T+ + ++C++ S L + VH A+VSG G D
Sbjct: 82 TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLD 141
Query: 139 SITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLR 198
+ +ALVT YSK ++ A +VFD + + +V NS++SGF G D+++Q+F M
Sbjct: 142 TYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMRE 201
Query: 199 LGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS 258
G PD T V L+S + +S+G +H + + D + + L+++Y+RC +
Sbjct: 202 SGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGK 261
Query: 259 AYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ-GKKADPVLIASVLAAAA 317
A VF+ + ++ W+A+I+ Y G +A+ F K+ G + V +VL+A A
Sbjct: 262 AREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACA 321
Query: 318 KSANVWPGAVIH-----GYVIQHGFELSVMVSSALVDMYSKCGYL 357
+ V G ++ Y + G E V +VDM + G+L
Sbjct: 322 HAGLVEEGRSVYKRMTKSYRLIPGVEHHV----CMVDMLGRAGFL 362
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/512 (30%), Positives = 264/512 (51%), Gaps = 4/512 (0%)
Query: 41 ATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQL 100
AT L+ Y ++ AR LFD+ P R V W ++I YA ++ A F +++
Sbjct: 48 ATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGT 107
Query: 101 KPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL-IDEAI 159
P+ FT + + ++C L VHG + G+ +A++ Y+ S+ ++ A
Sbjct: 108 SPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAAC 167
Query: 160 KVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPS 219
+F + + V ++I+GF H G L+++ ML Y + +
Sbjct: 168 LIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASID 227
Query: 220 LLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALIT 279
++ G+ IH +K F S V + ++ +Y RC ++ A H F+ + DL+TW+ LI+
Sbjct: 228 SVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLIS 287
Query: 280 GYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL 339
++ D +AL F++ QG + S++AA A A + G +HG + + GF
Sbjct: 288 EL-ERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNK 346
Query: 340 SVMVSSALVDMYSKCGYLGLGIQVF-ETMSERNIITYNSVILGLGLHGFTYQAFEFFRDI 398
+V +++AL+DMY+KCG + +VF E + RN++++ S+++G G HG+ +A E F +
Sbjct: 347 NVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKM 406
Query: 399 IEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN 458
+ G+ PD F A+L AC H GLV G + F M EYGI + Y +V LLG AG
Sbjct: 407 VSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGK 466
Query: 459 LEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDL-AEIVAHQLFENDPRKGAYKVMLSN 517
+ EAY + +P D + GA+L C + ++ L + + A ++ E P+ VMLS
Sbjct: 467 IGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSY 526
Query: 518 TYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549
YA +G+W D ++R + G +KEAG+SW+
Sbjct: 527 IYAAEGKWVDFARVRKMMRMMGNKKEAGMSWI 558
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 176/324 (54%), Gaps = 3/324 (0%)
Query: 140 ITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRL 199
I ++ L+ +Y + L++EA +FD + D D+V +MI+G+A + ++ + F M++
Sbjct: 46 ILATNLIVSYFEKGLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQ 105
Query: 200 GKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN-CMNS 258
G +P+E+TL ++ +L+ G +HG +K + YV + +++MYA C+ M +
Sbjct: 106 GTSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEA 165
Query: 259 AYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318
A +F + + VTW+ LITG++ GD L ++++ ++ + P I + A+A
Sbjct: 166 ACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASAS 225
Query: 319 SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSV 378
+V G IH VI+ GF+ ++ V ++++D+Y +CGYL F M ++++IT+N++
Sbjct: 226 IDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTL 285
Query: 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438
I L + +A F+ +G P+ TF++L+ AC + +N G+++ R+ G
Sbjct: 286 ISELE-RSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRR-G 343
Query: 439 IQAKTEHYIYMVKLLGLAGNLEEA 462
E ++ + GN+ ++
Sbjct: 344 FNKNVELANALIDMYAKCGNIPDS 367
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 126/276 (45%), Gaps = 8/276 (2%)
Query: 8 LVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQR 67
+ + S S S++ K++HA V K + ++ LY L A+ F + +
Sbjct: 218 IAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDK 277
Query: 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVH 127
+ WN++I + ++A +F+ P+ +T+ + AC+ + L + +H
Sbjct: 278 DLITWNTLISELERSDS-SEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLH 336
Query: 128 GGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-PDLVLCNSMISGFAHCGFW 186
G G ++ ++AL+ Y+K I ++ +VF + D +LV SM+ G+ G+
Sbjct: 337 GRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYG 396
Query: 187 DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSS---FDSYDYVS 243
++++LFD M+ G PD + ++S L V +G+ F + S + +
Sbjct: 397 AEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGL--VEKGLKYFNVMESEYGINPDRDIY 454
Query: 244 SVLVSMYARCNCMNSAYHVFNSL-FHPDLVTWSALI 278
+ +V + R + AY + + F PD TW A++
Sbjct: 455 NCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAIL 490
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,424,397
Number of Sequences: 539616
Number of extensions: 8681138
Number of successful extensions: 26155
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 18443
Number of HSP's gapped (non-prelim): 2296
length of query: 554
length of database: 191,569,459
effective HSP length: 123
effective length of query: 431
effective length of database: 125,196,691
effective search space: 53959773821
effective search space used: 53959773821
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)