Query 045069
Match_columns 554
No_of_seqs 648 out of 2892
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 09:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.3E-84 7.2E-89 678.5 61.3 536 17-554 201-736 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.9E-76 4.2E-81 619.9 59.7 532 9-544 92-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 1.3E-76 2.7E-81 606.8 56.4 488 66-553 84-572 (697)
4 PLN03218 maturation of RBCL 1; 100.0 1.1E-68 2.5E-73 549.8 52.4 507 32-545 364-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 4.2E-68 9.2E-73 545.6 54.3 497 6-505 373-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 7.9E-65 1.7E-69 519.9 46.4 433 7-442 127-562 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-33 3.2E-38 303.7 56.7 523 6-540 332-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-33 6.6E-38 301.2 56.6 519 7-536 367-898 (899)
9 PRK11447 cellulose synthase su 100.0 3E-24 6.6E-29 231.5 55.1 522 9-539 34-701 (1157)
10 PRK11447 cellulose synthase su 100.0 4.3E-24 9.4E-29 230.3 55.8 517 7-537 116-739 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 1.5E-21 3.2E-26 201.3 51.0 521 5-540 45-708 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.2E-20 2.6E-25 194.6 51.0 476 47-541 53-675 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.8E-22 3.9E-27 185.2 33.2 443 72-527 51-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 9.4E-21 2E-25 174.0 28.9 420 109-541 53-488 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 8E-20 1.7E-24 185.4 39.2 251 284-539 307-572 (615)
16 PRK11788 tetratricopeptide rep 99.9 2E-20 4.4E-25 180.5 30.0 295 249-547 44-356 (389)
17 PRK11788 tetratricopeptide rep 99.9 2E-19 4.3E-24 173.6 30.8 302 76-444 42-354 (389)
18 PRK15174 Vi polysaccharide exp 99.9 1.5E-18 3.2E-23 175.5 37.6 351 151-509 17-386 (656)
19 PRK10049 pgaA outer membrane p 99.9 1.7E-17 3.7E-22 171.5 43.3 396 73-510 19-462 (765)
20 PRK10049 pgaA outer membrane p 99.9 6.4E-18 1.4E-22 174.6 40.1 391 108-541 19-459 (765)
21 PRK15174 Vi polysaccharide exp 99.9 3.9E-18 8.5E-23 172.4 37.2 354 180-541 15-384 (656)
22 KOG2002 TPR-containing nuclear 99.8 4.9E-17 1.1E-21 157.7 39.4 451 86-542 253-749 (1018)
23 TIGR00990 3a0801s09 mitochondr 99.8 4.9E-17 1.1E-21 165.2 41.3 423 71-510 129-577 (615)
24 PRK14574 hmsH outer membrane p 99.8 1.3E-16 2.8E-21 161.7 42.1 439 44-512 40-521 (822)
25 KOG2002 TPR-containing nuclear 99.8 2.6E-16 5.6E-21 152.7 41.3 476 54-540 146-677 (1018)
26 KOG4422 Uncharacterized conser 99.8 1.4E-15 3.1E-20 134.3 38.8 412 13-469 125-587 (625)
27 PRK14574 hmsH outer membrane p 99.8 1.3E-15 2.8E-20 154.5 42.8 436 78-541 43-516 (822)
28 KOG2076 RNA polymerase III tra 99.8 5.9E-15 1.3E-19 142.5 44.7 528 9-540 145-851 (895)
29 KOG0495 HAT repeat protein [RN 99.8 1.2E-13 2.5E-18 128.8 45.2 488 48-552 386-892 (913)
30 KOG2003 TPR repeat-containing 99.8 1.6E-15 3.4E-20 135.0 30.0 439 75-536 207-720 (840)
31 KOG2003 TPR repeat-containing 99.8 1.1E-14 2.4E-19 129.8 34.0 453 39-500 202-718 (840)
32 KOG4422 Uncharacterized conser 99.7 4.1E-14 8.9E-19 125.2 33.7 428 68-544 115-596 (625)
33 KOG2076 RNA polymerase III tra 99.7 3E-13 6.6E-18 130.9 39.4 324 44-371 145-513 (895)
34 KOG0495 HAT repeat protein [RN 99.7 8.2E-12 1.8E-16 116.8 46.4 510 18-544 266-852 (913)
35 PF13429 TPR_15: Tetratricopep 99.7 7.1E-17 1.5E-21 147.3 11.0 257 277-537 14-276 (280)
36 KOG1126 DNA-binding cell divis 99.6 5.2E-14 1.1E-18 131.9 22.4 279 255-543 334-625 (638)
37 KOG4318 Bicoid mRNA stability 99.6 2.5E-12 5.3E-17 124.2 33.6 485 23-542 10-598 (1088)
38 KOG0547 Translocase of outer m 99.6 3.4E-12 7.3E-17 115.3 31.8 420 72-537 118-565 (606)
39 KOG1155 Anaphase-promoting com 99.6 5E-12 1.1E-16 113.5 32.4 254 277-537 233-494 (559)
40 KOG1915 Cell cycle control pro 99.6 2.9E-11 6.3E-16 108.9 37.1 446 81-536 85-583 (677)
41 PRK10747 putative protoheme IX 99.6 4.1E-13 8.9E-18 128.2 27.7 275 253-537 97-389 (398)
42 PRK10747 putative protoheme IX 99.6 3.2E-12 6.8E-17 122.2 28.7 223 248-504 161-390 (398)
43 KOG1915 Cell cycle control pro 99.6 3.3E-10 7.2E-15 102.2 38.7 490 36-535 71-622 (677)
44 PF13429 TPR_15: Tetratricopep 99.6 1.2E-14 2.6E-19 132.6 9.6 252 245-504 13-277 (280)
45 TIGR00540 hemY_coli hemY prote 99.6 5.3E-12 1.1E-16 121.4 27.9 282 252-537 96-398 (409)
46 KOG1155 Anaphase-promoting com 99.6 6.9E-12 1.5E-16 112.6 25.7 287 248-542 235-540 (559)
47 TIGR00540 hemY_coli hemY prote 99.5 1.3E-11 2.8E-16 118.7 29.0 143 358-504 246-399 (409)
48 KOG1173 Anaphase-promoting com 99.5 4E-11 8.6E-16 110.6 29.0 254 279-537 252-517 (611)
49 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.4E-17 123.1 19.1 248 286-539 334-587 (638)
50 COG3071 HemY Uncharacterized e 99.5 2.4E-10 5.2E-15 101.3 30.7 287 183-504 97-390 (400)
51 KOG2047 mRNA splicing factor [ 99.5 2.7E-09 5.9E-14 100.1 36.9 512 8-527 107-712 (835)
52 KOG4318 Bicoid mRNA stability 99.5 2.1E-11 4.5E-16 118.0 23.6 255 90-356 11-286 (1088)
53 COG2956 Predicted N-acetylgluc 99.5 9.7E-11 2.1E-15 100.5 24.3 288 254-545 49-354 (389)
54 COG3071 HemY Uncharacterized e 99.4 3.5E-10 7.6E-15 100.3 27.8 278 253-538 97-390 (400)
55 KOG2376 Signal recognition par 99.4 3.4E-09 7.4E-14 98.6 35.2 437 75-535 18-517 (652)
56 TIGR02521 type_IV_pilW type IV 99.4 3.4E-11 7.3E-16 107.4 21.4 199 339-538 29-232 (234)
57 COG2956 Predicted N-acetylgluc 99.4 4.3E-10 9.3E-15 96.7 26.2 287 83-436 49-347 (389)
58 KOG0547 Translocase of outer m 99.4 2.1E-10 4.7E-15 103.9 25.3 217 282-505 337-567 (606)
59 KOG4162 Predicted calmodulin-b 99.4 8.6E-09 1.9E-13 99.0 36.6 403 133-540 317-785 (799)
60 KOG3785 Uncharacterized conser 99.4 1.2E-09 2.6E-14 95.1 28.0 132 374-507 361-493 (557)
61 KOG1840 Kinesin light chain [C 99.4 2E-10 4.3E-15 109.3 24.0 231 307-537 200-478 (508)
62 KOG1174 Anaphase-promoting com 99.4 6.9E-09 1.5E-13 92.4 31.3 308 202-515 191-511 (564)
63 PF12569 NARP1: NMDA receptor- 99.4 7.9E-09 1.7E-13 99.8 33.6 430 77-534 12-516 (517)
64 PF13041 PPR_2: PPR repeat fam 99.3 2.7E-12 5.8E-17 81.8 5.4 50 67-116 1-50 (50)
65 PF13041 PPR_2: PPR repeat fam 99.3 6.9E-12 1.5E-16 79.9 6.6 50 370-419 1-50 (50)
66 KOG1156 N-terminal acetyltrans 99.3 3.6E-08 7.8E-13 93.0 33.2 425 72-540 11-470 (700)
67 PRK12370 invasion protein regu 99.3 6.5E-10 1.4E-14 111.2 23.5 241 286-539 276-536 (553)
68 PRK11189 lipoprotein NlpI; Pro 99.3 3.6E-10 7.7E-15 103.4 19.3 233 281-521 36-283 (296)
69 KOG2047 mRNA splicing factor [ 99.3 2.5E-07 5.4E-12 87.3 37.6 428 105-537 103-614 (835)
70 TIGR02521 type_IV_pilW type IV 99.3 8.4E-10 1.8E-14 98.3 21.2 199 271-504 31-232 (234)
71 KOG3616 Selective LIM binding 99.3 6.5E-08 1.4E-12 92.5 33.7 265 247-544 739-1030(1636)
72 COG3063 PilF Tfp pilus assembl 99.3 6.7E-10 1.5E-14 91.1 17.4 163 374-540 37-204 (250)
73 KOG1840 Kinesin light chain [C 99.3 5.1E-09 1.1E-13 99.8 26.2 238 242-504 201-479 (508)
74 PRK12370 invasion protein regu 99.3 5.5E-10 1.2E-14 111.7 20.3 211 320-538 275-502 (553)
75 KOG1129 TPR repeat-containing 99.2 2.7E-10 5.9E-15 97.9 14.6 225 311-540 228-460 (478)
76 KOG1129 TPR repeat-containing 99.2 3E-10 6.6E-15 97.6 14.4 236 275-515 227-469 (478)
77 KOG1173 Anaphase-promoting com 99.2 4.1E-08 8.8E-13 91.2 27.5 236 303-543 241-489 (611)
78 PF12569 NARP1: NMDA receptor- 99.2 1.1E-08 2.3E-13 98.9 24.8 255 281-540 14-293 (517)
79 PRK11189 lipoprotein NlpI; Pro 99.2 1.1E-08 2.3E-13 93.6 23.6 216 320-542 40-269 (296)
80 KOG3785 Uncharacterized conser 99.2 6.4E-07 1.4E-11 78.5 32.0 215 321-544 269-496 (557)
81 KOG2376 Signal recognition par 99.2 2.2E-07 4.9E-12 86.9 30.8 412 111-540 19-489 (652)
82 KOG1156 N-terminal acetyltrans 99.1 1.7E-06 3.7E-11 82.1 34.8 171 23-196 27-211 (700)
83 KOG1174 Anaphase-promoting com 99.1 3.6E-07 7.9E-12 81.7 28.3 392 138-544 96-506 (564)
84 COG3063 PilF Tfp pilus assembl 99.1 4.1E-08 8.8E-13 80.9 20.5 170 340-511 68-243 (250)
85 KOG3617 WD40 and TPR repeat-co 99.1 3.7E-06 8E-11 81.9 36.6 30 510-539 1331-1360(1416)
86 KOG3616 Selective LIM binding 99.1 5.3E-07 1.2E-11 86.5 30.5 219 279-533 714-932 (1636)
87 PF04733 Coatomer_E: Coatomer 99.1 1.7E-08 3.6E-13 90.9 19.4 225 276-511 40-272 (290)
88 KOG4162 Predicted calmodulin-b 99.1 5.3E-07 1.1E-11 87.2 30.0 447 25-510 310-789 (799)
89 KOG0624 dsRNA-activated protei 99.1 2.3E-07 5E-12 80.9 24.0 295 242-542 40-374 (504)
90 KOG1125 TPR repeat-containing 99.0 8.3E-09 1.8E-13 96.0 14.6 218 316-539 295-528 (579)
91 KOG0548 Molecular co-chaperone 99.0 5E-07 1.1E-11 83.8 25.8 445 46-534 10-485 (539)
92 KOG0985 Vesicle coat protein c 99.0 3.7E-05 8.1E-10 76.9 39.8 472 39-535 607-1246(1666)
93 KOG4340 Uncharacterized conser 99.0 1.7E-07 3.8E-12 80.0 21.1 318 37-369 9-338 (459)
94 cd05804 StaR_like StaR_like; a 99.0 1.9E-06 4.1E-11 82.2 30.2 259 278-539 50-337 (355)
95 PF04733 Coatomer_E: Coatomer 99.0 1.7E-08 3.7E-13 90.8 15.1 246 279-539 9-266 (290)
96 KOG3617 WD40 and TPR repeat-co 99.0 1.9E-06 4.1E-11 83.8 28.7 242 35-298 723-994 (1416)
97 PRK04841 transcriptional regul 99.0 7.1E-05 1.5E-09 81.1 44.9 259 281-539 462-761 (903)
98 KOG1127 TPR repeat-containing 98.9 3.4E-06 7.4E-11 83.9 30.1 176 21-197 474-657 (1238)
99 KOG0985 Vesicle coat protein c 98.9 3.2E-05 6.8E-10 77.4 34.6 342 18-395 853-1217(1666)
100 KOG0548 Molecular co-chaperone 98.9 7.6E-07 1.6E-11 82.6 22.4 400 112-540 10-457 (539)
101 PRK10370 formate-dependent nit 98.9 1.2E-07 2.5E-12 80.7 16.1 120 420-541 52-176 (198)
102 TIGR03302 OM_YfiO outer membra 98.9 1.7E-07 3.7E-12 83.3 17.6 182 339-539 31-233 (235)
103 KOG4340 Uncharacterized conser 98.9 2.9E-06 6.3E-11 72.7 23.4 412 99-538 5-443 (459)
104 cd05804 StaR_like StaR_like; a 98.8 1.9E-05 4.2E-10 75.2 29.6 192 311-504 119-336 (355)
105 PRK15359 type III secretion sy 98.8 2.2E-07 4.7E-12 74.7 13.4 121 393-519 14-136 (144)
106 PRK15359 type III secretion sy 98.7 1.3E-07 2.9E-12 75.9 11.3 110 428-542 14-125 (144)
107 KOG1070 rRNA processing protei 98.7 1.4E-06 3E-11 89.5 20.5 205 338-546 1455-1671(1710)
108 PRK04841 transcriptional regul 98.7 6.4E-05 1.4E-09 81.5 33.6 258 179-436 461-760 (903)
109 PRK15179 Vi polysaccharide bio 98.7 2.2E-06 4.8E-11 86.5 20.5 127 407-536 86-215 (694)
110 PF12854 PPR_1: PPR repeat 98.7 2.3E-08 4.9E-13 56.9 3.6 33 134-166 2-34 (34)
111 KOG0624 dsRNA-activated protei 98.7 4.5E-05 9.7E-10 67.0 24.8 195 313-513 162-379 (504)
112 PLN02789 farnesyltranstransfer 98.7 9.6E-06 2.1E-10 74.2 22.1 212 320-536 51-300 (320)
113 COG5010 TadD Flp pilus assembl 98.7 2.1E-06 4.6E-11 72.6 16.1 156 376-534 70-227 (257)
114 KOG1914 mRNA cleavage and poly 98.6 0.00031 6.6E-09 65.9 30.6 422 35-461 17-528 (656)
115 COG5010 TadD Flp pilus assembl 98.6 3.9E-06 8.4E-11 71.1 16.8 155 345-502 70-229 (257)
116 PF12854 PPR_1: PPR repeat 98.6 5.8E-08 1.3E-12 55.2 3.9 32 402-433 2-33 (34)
117 KOG1127 TPR repeat-containing 98.6 3.5E-05 7.7E-10 77.0 25.0 451 70-536 493-994 (1238)
118 KOG1128 Uncharacterized conser 98.6 1.9E-06 4.2E-11 82.9 16.0 187 338-539 395-583 (777)
119 PRK10370 formate-dependent nit 98.6 7.5E-06 1.6E-10 69.7 17.8 157 348-515 23-184 (198)
120 KOG1128 Uncharacterized conser 98.6 2.8E-06 6.1E-11 81.9 16.5 215 237-469 395-613 (777)
121 PLN02789 farnesyltranstransfer 98.6 4.2E-06 9E-11 76.6 17.1 196 343-542 39-254 (320)
122 PRK14720 transcript cleavage f 98.6 1.9E-05 4.2E-10 80.7 23.2 233 239-520 30-268 (906)
123 KOG3060 Uncharacterized conser 98.6 4E-06 8.7E-11 70.3 15.1 159 378-540 58-222 (289)
124 KOG3081 Vesicle coat complex C 98.6 5.8E-05 1.3E-09 64.1 22.0 247 253-510 21-277 (299)
125 KOG1125 TPR repeat-containing 98.6 5.5E-06 1.2E-10 77.8 17.3 245 281-531 295-564 (579)
126 TIGR02552 LcrH_SycD type III s 98.5 1.1E-06 2.3E-11 70.5 11.1 93 447-539 21-115 (135)
127 PRK15363 pathogenicity island 98.5 9.1E-07 2E-11 69.6 9.7 97 443-539 35-133 (157)
128 TIGR03302 OM_YfiO outer membra 98.5 4.9E-06 1.1E-10 73.9 15.9 183 303-506 30-234 (235)
129 PRK15179 Vi polysaccharide bio 98.5 2.4E-05 5.1E-10 79.2 21.8 137 371-511 85-224 (694)
130 KOG3081 Vesicle coat complex C 98.5 5.7E-05 1.2E-09 64.1 18.9 170 292-470 94-269 (299)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 7.7E-06 1.7E-10 76.3 14.7 122 410-536 172-295 (395)
132 COG4783 Putative Zn-dependent 98.4 3E-05 6.4E-10 71.7 18.1 133 384-538 318-454 (484)
133 COG4783 Putative Zn-dependent 98.4 5.2E-05 1.1E-09 70.2 19.1 136 351-505 316-455 (484)
134 KOG3060 Uncharacterized conser 98.4 3.2E-05 7E-10 65.0 16.2 155 385-541 25-186 (289)
135 TIGR02552 LcrH_SycD type III s 98.4 9.3E-06 2E-10 65.0 12.8 116 394-513 5-123 (135)
136 KOG1070 rRNA processing protei 98.4 9.8E-05 2.1E-09 76.6 21.5 226 308-536 1460-1698(1710)
137 PRK14720 transcript cleavage f 98.3 0.0001 2.2E-09 75.6 21.4 122 408-544 117-258 (906)
138 PF09976 TPR_21: Tetratricopep 98.3 2.4E-05 5.3E-10 63.2 14.0 114 419-535 23-144 (145)
139 TIGR00756 PPR pentatricopeptid 98.3 1.8E-06 3.9E-11 50.1 4.5 34 71-104 2-35 (35)
140 PF13414 TPR_11: TPR repeat; P 98.3 2.7E-06 6E-11 58.6 6.2 66 474-539 2-68 (69)
141 PF13812 PPR_3: Pentatricopept 98.2 2.5E-06 5.4E-11 49.0 4.4 33 70-102 2-34 (34)
142 PF13432 TPR_16: Tetratricopep 98.2 3.2E-06 7E-11 57.4 5.6 60 481-540 3-62 (65)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 5.2E-05 1.1E-09 70.9 15.1 126 342-470 170-295 (395)
144 cd00189 TPR Tetratricopeptide 98.2 1.3E-05 2.7E-10 59.6 9.4 94 446-539 3-98 (100)
145 COG4235 Cytochrome c biogenesi 98.2 2.7E-05 5.9E-10 67.9 11.9 112 439-550 152-268 (287)
146 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.5E-05 5.5E-10 60.8 11.0 94 446-539 5-106 (119)
147 PF09976 TPR_21: Tetratricopep 98.2 0.00014 3E-09 58.7 14.9 123 375-501 15-144 (145)
148 TIGR00756 PPR pentatricopeptid 98.2 3.9E-06 8.4E-11 48.6 4.3 35 171-205 1-35 (35)
149 PF12895 Apc3: Anaphase-promot 98.1 2.1E-06 4.6E-11 61.8 3.3 78 456-534 2-83 (84)
150 KOG1914 mRNA cleavage and poly 98.1 0.01 2.2E-07 56.1 36.7 175 357-534 347-535 (656)
151 PLN03088 SGT1, suppressor of 98.1 1.5E-05 3.2E-10 74.9 8.8 108 413-522 8-117 (356)
152 PF04840 Vps16_C: Vps16, C-ter 98.1 0.0082 1.8E-07 55.0 26.1 105 347-468 183-287 (319)
153 PF13812 PPR_3: Pentatricopept 98.1 8.7E-06 1.9E-10 46.7 4.5 33 373-405 2-34 (34)
154 KOG2053 Mitochondrial inherita 98.0 0.02 4.4E-07 57.6 36.6 465 47-536 52-606 (932)
155 PF14559 TPR_19: Tetratricopep 98.0 1.2E-05 2.6E-10 55.2 4.8 56 486-541 2-57 (68)
156 KOG0553 TPR repeat-containing 98.0 5.8E-05 1.2E-09 65.5 9.7 108 417-526 91-200 (304)
157 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00017 3.7E-09 56.1 11.4 105 409-513 4-114 (119)
158 KOG2053 Mitochondrial inherita 97.9 0.031 6.6E-07 56.4 40.6 216 81-301 21-256 (932)
159 PLN03088 SGT1, suppressor of 97.9 0.00018 3.9E-09 67.7 12.7 89 378-470 8-97 (356)
160 KOG1538 Uncharacterized conser 97.9 0.0028 6.1E-08 60.9 20.0 97 375-504 750-846 (1081)
161 PF13371 TPR_9: Tetratricopept 97.9 4.2E-05 9.1E-10 53.3 6.2 60 483-542 3-62 (73)
162 KOG0553 TPR repeat-containing 97.9 6E-05 1.3E-09 65.4 8.0 93 451-543 89-183 (304)
163 PRK10866 outer membrane biogen 97.9 0.0059 1.3E-07 53.9 20.3 171 348-537 39-240 (243)
164 PF08579 RPM2: Mitochondrial r 97.8 0.00022 4.7E-09 52.1 8.8 79 73-151 29-116 (120)
165 COG4700 Uncharacterized protei 97.8 0.0039 8.4E-08 50.2 16.5 133 403-537 85-221 (251)
166 PRK02603 photosystem I assembl 97.8 0.00023 4.9E-09 59.5 10.6 95 445-539 37-150 (172)
167 PF01535 PPR: PPR repeat; Int 97.8 2.9E-05 6.2E-10 43.4 3.6 30 71-100 2-31 (31)
168 PF13432 TPR_16: Tetratricopep 97.8 5.1E-05 1.1E-09 51.4 5.2 61 449-509 3-65 (65)
169 cd00189 TPR Tetratricopeptide 97.8 0.00022 4.8E-09 52.7 9.3 91 414-506 7-99 (100)
170 PRK15331 chaperone protein Sic 97.8 0.00073 1.6E-08 53.8 11.8 90 448-537 42-133 (165)
171 PRK02603 photosystem I assembl 97.8 0.00062 1.3E-08 56.9 12.3 128 373-523 36-165 (172)
172 PF01535 PPR: PPR repeat; Int 97.8 3.9E-05 8.5E-10 42.8 3.4 31 171-201 1-31 (31)
173 PRK10153 DNA-binding transcrip 97.7 0.0015 3.2E-08 64.4 16.1 67 474-541 419-485 (517)
174 PRK10153 DNA-binding transcrip 97.7 0.00087 1.9E-08 66.0 14.4 141 370-512 335-490 (517)
175 CHL00033 ycf3 photosystem I as 97.7 0.00036 7.8E-09 58.1 10.2 93 443-535 35-139 (168)
176 PF07079 DUF1347: Protein of u 97.7 0.044 9.4E-07 51.0 33.8 233 298-536 252-522 (549)
177 PF12895 Apc3: Anaphase-promot 97.7 0.00015 3.2E-09 52.1 6.4 79 385-467 2-82 (84)
178 PF05843 Suf: Suppressor of fo 97.7 0.0025 5.4E-08 57.8 15.6 135 374-511 3-143 (280)
179 PF14559 TPR_19: Tetratricopep 97.7 7.2E-05 1.6E-09 51.2 4.5 62 455-516 3-66 (68)
180 KOG2041 WD40 repeat protein [G 97.7 0.068 1.5E-06 52.4 25.6 41 53-95 678-718 (1189)
181 PF14938 SNAP: Soluble NSF att 97.7 0.0049 1.1E-07 56.2 17.6 92 416-507 123-228 (282)
182 PF10037 MRP-S27: Mitochondria 97.6 0.00048 1E-08 64.9 10.4 78 72-149 106-183 (429)
183 CHL00033 ycf3 photosystem I as 97.6 0.004 8.8E-08 51.8 15.1 80 373-454 36-117 (168)
184 PF04840 Vps16_C: Vps16, C-ter 97.6 0.058 1.3E-06 49.6 25.6 109 409-534 179-287 (319)
185 COG3898 Uncharacterized membra 97.6 0.056 1.2E-06 49.2 24.7 244 282-538 131-392 (531)
186 PF08579 RPM2: Mitochondrial r 97.6 0.00085 1.8E-08 49.1 8.9 79 275-353 29-116 (120)
187 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.5E-08 62.4 12.2 117 302-418 62-184 (429)
188 PF14938 SNAP: Soluble NSF att 97.6 0.0088 1.9E-07 54.5 17.7 113 344-469 97-222 (282)
189 PF12688 TPR_5: Tetratrico pep 97.6 0.0012 2.5E-08 50.5 9.9 87 450-536 8-102 (120)
190 PRK10803 tol-pal system protei 97.5 0.00085 1.8E-08 59.6 10.0 99 409-509 145-251 (263)
191 KOG0550 Molecular chaperone (D 97.5 0.0026 5.6E-08 57.9 12.6 154 381-540 178-352 (486)
192 PF13431 TPR_17: Tetratricopep 97.5 0.00012 2.6E-09 41.5 2.7 33 498-530 2-34 (34)
193 PF13414 TPR_11: TPR repeat; P 97.5 0.00033 7.2E-09 48.0 5.5 64 443-506 3-69 (69)
194 PF05843 Suf: Suppressor of fo 97.5 0.0014 3E-08 59.5 11.0 129 408-538 2-136 (280)
195 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00062 1.3E-08 63.5 8.6 66 473-538 73-141 (453)
196 COG5107 RNA14 Pre-mRNA 3'-end 97.5 0.098 2.1E-06 48.7 25.7 449 23-510 29-537 (660)
197 KOG1538 Uncharacterized conser 97.4 0.029 6.2E-07 54.4 18.9 56 106-164 600-657 (1081)
198 PRK15363 pathogenicity island 97.4 0.0074 1.6E-07 48.0 12.7 93 410-504 38-132 (157)
199 COG4700 Uncharacterized protei 97.4 0.031 6.6E-07 45.3 15.9 124 303-428 86-214 (251)
200 PF13424 TPR_12: Tetratricopep 97.4 0.00031 6.7E-09 49.6 4.6 62 476-537 6-74 (78)
201 PF06239 ECSIT: Evolutionarily 97.4 0.00095 2.1E-08 55.5 7.9 97 58-154 34-153 (228)
202 KOG2280 Vacuolar assembly/sort 97.4 0.19 4E-06 50.0 26.6 106 345-466 688-793 (829)
203 KOG2796 Uncharacterized conser 97.4 0.008 1.7E-07 51.3 13.2 136 374-510 179-321 (366)
204 PF13281 DUF4071: Domain of un 97.3 0.039 8.4E-07 51.2 18.7 165 343-510 143-340 (374)
205 PF12688 TPR_5: Tetratrico pep 97.3 0.0088 1.9E-07 45.7 12.1 89 378-468 7-100 (120)
206 PF13428 TPR_14: Tetratricopep 97.3 0.00052 1.1E-08 41.8 4.5 42 476-517 2-43 (44)
207 PF07079 DUF1347: Protein of u 97.3 0.16 3.5E-06 47.4 32.7 30 270-299 297-326 (549)
208 PRK10803 tol-pal system protei 97.3 0.0047 1E-07 55.0 11.7 95 446-540 146-248 (263)
209 PF13371 TPR_9: Tetratricopept 97.3 0.001 2.2E-08 46.2 6.2 65 451-515 3-69 (73)
210 COG3898 Uncharacterized membra 97.2 0.16 3.4E-06 46.5 22.6 273 82-368 97-390 (531)
211 PF13525 YfiO: Outer membrane 97.2 0.02 4.4E-07 49.1 14.5 50 481-530 147-199 (203)
212 KOG2041 WD40 repeat protein [G 97.1 0.27 5.8E-06 48.5 22.4 207 34-271 688-909 (1189)
213 PF06239 ECSIT: Evolutionarily 97.1 0.0056 1.2E-07 51.1 9.7 96 261-356 35-153 (228)
214 PRK10866 outer membrane biogen 97.0 0.21 4.5E-06 44.2 20.7 63 274-336 35-99 (243)
215 KOG2280 Vacuolar assembly/sort 97.0 0.43 9.4E-06 47.6 30.6 110 409-534 686-795 (829)
216 KOG1130 Predicted G-alpha GTPa 97.0 0.0041 9E-08 56.5 8.7 129 409-537 197-343 (639)
217 KOG0550 Molecular chaperone (D 96.9 0.04 8.7E-07 50.5 14.2 16 354-369 216-231 (486)
218 KOG2796 Uncharacterized conser 96.9 0.036 7.8E-07 47.6 12.8 138 272-411 178-323 (366)
219 PF09205 DUF1955: Domain of un 96.9 0.049 1.1E-06 41.3 11.9 141 382-541 12-152 (161)
220 PRK11906 transcriptional regul 96.8 0.02 4.2E-07 54.0 11.8 145 387-534 273-432 (458)
221 COG4235 Cytochrome c biogenesi 96.8 0.061 1.3E-06 47.6 14.1 108 404-513 153-265 (287)
222 KOG0543 FKBP-type peptidyl-pro 96.8 0.022 4.8E-07 52.3 11.5 95 444-538 258-355 (397)
223 PF10300 DUF3808: Protein of u 96.8 0.091 2E-06 51.6 16.5 160 375-537 191-375 (468)
224 KOG1130 Predicted G-alpha GTPa 96.7 0.005 1.1E-07 56.0 6.8 93 444-536 196-302 (639)
225 COG3118 Thioredoxin domain-con 96.7 0.15 3.2E-06 45.0 15.4 121 416-539 143-266 (304)
226 PF13512 TPR_18: Tetratricopep 96.7 0.045 9.8E-07 42.8 11.1 89 451-539 18-129 (142)
227 PF12921 ATP13: Mitochondrial 96.7 0.027 5.9E-07 43.6 9.8 53 402-454 47-99 (126)
228 PF13525 YfiO: Outer membrane 96.6 0.38 8.2E-06 41.4 18.4 176 276-462 10-197 (203)
229 KOG0543 FKBP-type peptidyl-pro 96.6 0.0094 2E-07 54.6 7.8 68 475-542 257-324 (397)
230 PF03704 BTAD: Bacterial trans 96.6 0.011 2.3E-07 47.9 7.6 68 477-544 64-136 (146)
231 COG1729 Uncharacterized protei 96.5 0.029 6.3E-07 48.9 9.7 100 409-511 144-251 (262)
232 PF04184 ST7: ST7 protein; In 96.4 0.11 2.5E-06 49.2 13.5 145 384-542 180-328 (539)
233 PRK11619 lytic murein transgly 96.3 1.5 3.3E-05 44.9 31.4 260 244-516 103-383 (644)
234 KOG2610 Uncharacterized conser 96.3 0.1 2.3E-06 46.5 12.2 158 385-545 116-283 (491)
235 PF13424 TPR_12: Tetratricopep 96.3 0.0054 1.2E-07 43.2 3.7 28 476-503 47-74 (78)
236 KOG4555 TPR repeat-containing 96.3 0.035 7.6E-07 42.0 7.9 84 454-537 54-143 (175)
237 KOG3941 Intermediate in Toll s 96.3 0.031 6.6E-07 48.5 8.6 113 54-166 50-186 (406)
238 PRK15331 chaperone protein Sic 96.3 0.26 5.7E-06 39.6 13.2 92 413-507 43-136 (165)
239 PRK11906 transcriptional regul 96.3 0.24 5.3E-06 46.9 15.0 142 356-502 273-434 (458)
240 PF13281 DUF4071: Domain of un 96.2 0.48 1E-05 44.2 16.7 164 375-539 144-335 (374)
241 COG3118 Thioredoxin domain-con 96.2 0.48 1E-05 42.0 15.7 152 380-533 142-296 (304)
242 KOG1585 Protein required for f 96.2 0.7 1.5E-05 39.6 16.3 54 478-532 193-250 (308)
243 PF03704 BTAD: Bacterial trans 96.2 0.066 1.4E-06 43.2 10.0 70 375-446 65-139 (146)
244 KOG1941 Acetylcholine receptor 96.1 0.06 1.3E-06 48.5 9.9 48 281-328 16-65 (518)
245 COG1729 Uncharacterized protei 96.1 0.042 9.1E-07 47.9 8.7 97 445-542 144-248 (262)
246 KOG2610 Uncharacterized conser 96.0 0.088 1.9E-06 47.0 10.2 116 418-535 114-235 (491)
247 KOG2114 Vacuolar assembly/sort 96.0 2.3 4.9E-05 43.4 27.2 55 448-503 710-764 (933)
248 KOG1258 mRNA processing protei 95.9 1.9 4.1E-05 42.2 29.3 408 68-523 44-489 (577)
249 COG0457 NrfG FOG: TPR repeat [ 95.9 1.1 2.4E-05 39.3 24.8 180 285-468 37-227 (291)
250 COG4105 ComL DNA uptake lipopr 95.7 1.3 2.7E-05 38.6 16.9 168 352-537 45-232 (254)
251 KOG2114 Vacuolar assembly/sort 95.7 1.5 3.2E-05 44.7 18.0 138 49-196 379-516 (933)
252 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.085 1.9E-06 49.8 9.3 62 443-504 75-141 (453)
253 PF07719 TPR_2: Tetratricopept 95.6 0.034 7.4E-07 31.3 4.4 31 477-507 3-33 (34)
254 PF12921 ATP13: Mitochondrial 95.5 0.19 4.2E-06 38.9 9.3 50 302-351 48-98 (126)
255 PF00515 TPR_1: Tetratricopept 95.4 0.034 7.3E-07 31.4 3.8 31 477-507 3-33 (34)
256 KOG1920 IkappaB kinase complex 95.4 4.8 0.0001 43.0 21.3 153 355-535 894-1052(1265)
257 KOG4555 TPR repeat-containing 95.2 0.075 1.6E-06 40.3 6.0 57 482-538 50-106 (175)
258 PF13512 TPR_18: Tetratricopep 95.1 0.23 5.1E-06 38.9 8.8 69 475-543 10-81 (142)
259 PF02259 FAT: FAT domain; Int 95.1 2.3 5E-05 40.4 17.8 149 370-521 144-304 (352)
260 KOG3941 Intermediate in Toll s 95.1 0.23 4.9E-06 43.4 9.3 98 361-459 54-174 (406)
261 COG0457 NrfG FOG: TPR repeat [ 95.0 2.3 4.9E-05 37.2 24.5 195 342-538 60-265 (291)
262 smart00299 CLH Clathrin heavy 95.0 1.5 3.2E-05 35.0 13.6 112 71-195 9-121 (140)
263 smart00299 CLH Clathrin heavy 94.9 1.5 3.3E-05 34.9 15.5 127 374-520 9-136 (140)
264 PF13176 TPR_7: Tetratricopept 94.9 0.051 1.1E-06 31.2 3.6 26 511-536 1-26 (36)
265 PF13428 TPR_14: Tetratricopep 94.9 0.057 1.2E-06 32.7 4.0 34 509-542 1-34 (44)
266 KOG4234 TPR repeat-containing 94.5 0.15 3.3E-06 41.9 6.6 103 414-518 102-211 (271)
267 PF04053 Coatomer_WDAD: Coatom 94.4 0.88 1.9E-05 44.2 12.8 131 77-233 269-401 (443)
268 COG4649 Uncharacterized protei 94.4 1.5 3.2E-05 35.5 11.6 127 374-504 61-196 (221)
269 PF09613 HrpB1_HrpK: Bacterial 94.4 0.27 5.8E-06 39.4 7.7 80 445-524 9-93 (160)
270 KOG1258 mRNA processing protei 94.4 5.7 0.00012 39.1 23.9 121 407-529 297-420 (577)
271 PF08631 SPO22: Meiosis protei 94.3 4.1 8.8E-05 37.1 23.9 17 485-501 256-272 (278)
272 PF10300 DUF3808: Protein of u 94.3 0.59 1.3E-05 46.0 11.5 145 391-539 176-335 (468)
273 PF07719 TPR_2: Tetratricopept 94.2 0.08 1.7E-06 29.7 3.4 31 510-540 2-32 (34)
274 TIGR02561 HrpB1_HrpK type III 94.2 0.28 6.1E-06 38.5 7.2 51 488-538 23-73 (153)
275 PF09205 DUF1955: Domain of un 94.2 1.4 3E-05 33.9 10.4 61 375-436 89-149 (161)
276 KOG1941 Acetylcholine receptor 93.8 1.4 3.1E-05 40.1 11.7 218 251-468 17-271 (518)
277 KOG0890 Protein kinase of the 93.8 17 0.00036 42.5 27.8 67 473-541 1668-1734(2382)
278 PF00515 TPR_1: Tetratricopept 93.8 0.11 2.5E-06 29.2 3.4 31 510-540 2-32 (34)
279 PF04184 ST7: ST7 protein; In 93.8 4.8 0.0001 38.8 15.5 102 411-512 263-383 (539)
280 PF04053 Coatomer_WDAD: Coatom 93.7 2.1 4.6E-05 41.6 13.9 158 280-469 270-428 (443)
281 PF00637 Clathrin: Region in C 93.6 0.039 8.5E-07 44.3 1.7 85 109-196 12-96 (143)
282 COG4785 NlpI Lipoprotein NlpI, 93.4 4.2 9.2E-05 34.4 13.2 30 510-539 238-267 (297)
283 PRK11619 lytic murein transgly 93.4 11 0.00023 39.0 37.2 93 450-542 414-509 (644)
284 PRK15180 Vi polysaccharide bio 93.3 1.2 2.6E-05 42.1 10.8 125 383-511 300-427 (831)
285 PF13181 TPR_8: Tetratricopept 93.1 0.19 4E-06 28.2 3.6 29 478-506 4-32 (34)
286 PF13176 TPR_7: Tetratricopept 93.0 0.18 3.9E-06 28.9 3.4 27 478-504 2-28 (36)
287 PF13174 TPR_6: Tetratricopept 93.0 0.2 4.4E-06 27.7 3.6 24 514-537 5-28 (33)
288 PF10602 RPN7: 26S proteasome 92.7 2.8 6.1E-05 35.0 11.4 97 374-470 38-140 (177)
289 PF13170 DUF4003: Protein of u 92.6 3 6.4E-05 38.1 12.3 134 8-143 62-221 (297)
290 KOG4234 TPR repeat-containing 92.4 1.6 3.5E-05 36.2 9.0 86 380-470 103-195 (271)
291 PRK09687 putative lyase; Provi 92.2 8.8 0.00019 34.9 25.0 58 239-299 205-262 (280)
292 COG3629 DnrI DNA-binding trans 92.2 0.84 1.8E-05 40.7 8.0 61 444-504 154-216 (280)
293 PF13174 TPR_6: Tetratricopept 92.2 0.19 4.2E-06 27.8 2.8 31 478-508 3-33 (33)
294 COG3947 Response regulator con 92.1 8.4 0.00018 34.3 13.7 60 477-536 281-340 (361)
295 PF09613 HrpB1_HrpK: Bacterial 91.9 5.7 0.00012 32.0 12.6 86 418-506 21-108 (160)
296 COG2976 Uncharacterized protei 91.9 2.8 6E-05 34.8 9.9 89 450-539 96-189 (207)
297 PF13181 TPR_8: Tetratricopept 91.8 0.36 7.8E-06 27.0 3.7 30 510-539 2-31 (34)
298 PF07721 TPR_4: Tetratricopept 91.8 0.25 5.5E-06 25.7 2.8 24 510-533 2-25 (26)
299 PF00637 Clathrin: Region in C 91.8 0.17 3.7E-06 40.6 3.2 86 75-167 13-98 (143)
300 PF13929 mRNA_stabil: mRNA sta 91.8 8.1 0.00018 34.6 13.4 153 27-194 101-262 (292)
301 PF02259 FAT: FAT domain; Int 91.7 12 0.00026 35.4 19.1 53 278-334 5-57 (352)
302 COG4455 ImpE Protein of avirul 91.4 0.55 1.2E-05 39.4 5.6 63 447-509 5-69 (273)
303 KOG1586 Protein required for f 91.1 9.2 0.0002 32.9 14.1 20 486-505 165-184 (288)
304 KOG2063 Vacuolar assembly/sort 91.1 13 0.00028 39.3 16.1 29 272-300 505-533 (877)
305 KOG4570 Uncharacterized conser 90.9 1.7 3.7E-05 38.8 8.3 102 31-134 57-165 (418)
306 KOG0545 Aryl-hydrocarbon recep 90.9 0.89 1.9E-05 39.0 6.4 64 478-541 233-296 (329)
307 PRK09687 putative lyase; Provi 90.9 12 0.00027 33.9 26.0 136 371-519 141-277 (280)
308 COG1747 Uncharacterized N-term 90.8 17 0.00036 35.4 21.0 161 303-470 63-232 (711)
309 PF06552 TOM20_plant: Plant sp 90.7 1.2 2.6E-05 36.4 6.8 62 472-541 66-139 (186)
310 KOG4648 Uncharacterized conser 90.5 0.77 1.7E-05 41.4 6.0 102 412-515 102-205 (536)
311 KOG0890 Protein kinase of the 90.5 42 0.00092 39.5 22.5 310 175-504 1388-1731(2382)
312 KOG1920 IkappaB kinase complex 90.4 29 0.00064 37.6 21.8 127 254-400 894-1027(1265)
313 COG5107 RNA14 Pre-mRNA 3'-end 90.3 17 0.00037 34.7 30.9 129 408-538 398-531 (660)
314 KOG4570 Uncharacterized conser 90.3 1.9 4.1E-05 38.5 8.1 100 335-436 58-164 (418)
315 PF14561 TPR_20: Tetratricopep 90.3 1.1 2.3E-05 32.4 5.7 52 473-524 20-73 (90)
316 PF13374 TPR_10: Tetratricopep 90.2 0.55 1.2E-05 27.7 3.7 28 510-537 3-30 (42)
317 cd00923 Cyt_c_Oxidase_Va Cytoc 90.2 2.1 4.5E-05 30.8 6.7 62 388-451 23-84 (103)
318 KOG1586 Protein required for f 89.9 12 0.00026 32.2 14.3 19 489-507 209-227 (288)
319 PRK12798 chemotaxis protein; R 89.7 19 0.00041 34.2 22.2 184 354-540 125-326 (421)
320 COG4649 Uncharacterized protei 89.7 10 0.00022 31.0 14.8 119 351-470 68-194 (221)
321 PF02284 COX5A: Cytochrome c o 89.5 3.3 7.2E-05 30.2 7.4 61 390-452 28-88 (108)
322 KOG1585 Protein required for f 89.3 14 0.0003 32.2 16.7 167 287-467 74-251 (308)
323 COG3629 DnrI DNA-binding trans 89.3 3.4 7.4E-05 37.0 9.1 77 71-148 155-236 (280)
324 COG2976 Uncharacterized protei 89.0 12 0.00027 31.2 13.7 92 413-507 95-191 (207)
325 PF14853 Fis1_TPR_C: Fis1 C-te 88.9 3.4 7.4E-05 26.1 6.5 38 478-515 4-41 (53)
326 TIGR03504 FimV_Cterm FimV C-te 88.2 0.93 2E-05 27.3 3.4 27 513-539 3-29 (44)
327 PF04097 Nic96: Nup93/Nic96; 88.2 34 0.00074 35.3 21.1 50 169-219 110-159 (613)
328 PF13374 TPR_10: Tetratricopep 88.2 1.1 2.3E-05 26.4 3.9 28 477-504 4-31 (42)
329 PF10602 RPN7: 26S proteasome 88.1 5.5 0.00012 33.2 9.3 61 273-333 38-100 (177)
330 KOG1550 Extracellular protein 87.8 34 0.00074 34.8 22.6 246 283-539 261-539 (552)
331 PF08631 SPO22: Meiosis protei 87.8 21 0.00046 32.4 24.2 21 516-536 253-273 (278)
332 PF13431 TPR_17: Tetratricopep 87.7 0.65 1.4E-05 26.1 2.5 22 442-463 12-33 (34)
333 PF04097 Nic96: Nup93/Nic96; 87.6 37 0.00081 35.1 24.9 68 71-139 113-187 (613)
334 TIGR02508 type_III_yscG type I 87.6 8.9 0.00019 27.9 8.6 87 119-209 20-106 (115)
335 PF13170 DUF4003: Protein of u 87.4 23 0.0005 32.4 18.3 93 358-453 120-227 (297)
336 smart00028 TPR Tetratricopepti 87.2 1.3 2.9E-05 23.6 3.8 25 512-536 4-28 (34)
337 KOG1550 Extracellular protein 87.1 11 0.00024 38.2 12.5 83 458-541 343-429 (552)
338 KOG4648 Uncharacterized conser 87.1 2.2 4.8E-05 38.6 6.5 86 379-468 104-190 (536)
339 COG4105 ComL DNA uptake lipopr 87.0 21 0.00045 31.4 21.5 59 278-336 41-101 (254)
340 TIGR02561 HrpB1_HrpK type III 86.8 4.2 9.1E-05 32.2 7.1 86 416-504 19-106 (153)
341 PRK10941 hypothetical protein; 86.5 4.4 9.6E-05 36.3 8.2 59 481-539 187-245 (269)
342 PF06552 TOM20_plant: Plant sp 86.3 18 0.00038 29.9 11.4 109 389-504 8-136 (186)
343 PF04910 Tcf25: Transcriptiona 86.2 20 0.00043 34.0 12.8 58 480-537 108-167 (360)
344 PF11207 DUF2989: Protein of u 85.8 8.5 0.00018 32.4 8.9 72 458-529 121-198 (203)
345 PRK15180 Vi polysaccharide bio 85.3 7.6 0.00016 37.1 9.2 150 351-505 299-455 (831)
346 PF09986 DUF2225: Uncharacteri 84.5 5 0.00011 34.6 7.4 66 477-542 120-198 (214)
347 KOG2063 Vacuolar assembly/sort 84.5 61 0.0013 34.6 17.3 128 71-216 506-637 (877)
348 KOG0276 Vesicle coat complex C 84.4 34 0.00073 34.2 13.2 27 408-434 667-693 (794)
349 smart00028 TPR Tetratricopepti 84.3 1.8 3.9E-05 23.0 3.4 31 476-506 2-32 (34)
350 PF07721 TPR_4: Tetratricopept 84.0 2.4 5.2E-05 22.0 3.4 20 448-467 6-25 (26)
351 KOG1308 Hsp70-interacting prot 83.9 0.58 1.3E-05 42.2 1.5 84 457-540 128-213 (377)
352 COG4785 NlpI Lipoprotein NlpI, 83.9 26 0.00057 29.9 13.4 159 340-505 98-267 (297)
353 KOG2066 Vacuolar assembly/sort 83.5 19 0.00042 36.9 11.6 28 510-537 506-533 (846)
354 PF10345 Cohesin_load: Cohesin 82.6 64 0.0014 33.4 36.4 50 488-537 547-605 (608)
355 KOG4642 Chaperone-dependent E3 82.6 5.6 0.00012 34.3 6.6 55 481-535 50-104 (284)
356 cd00923 Cyt_c_Oxidase_Va Cytoc 82.1 11 0.00025 27.2 6.9 49 287-335 23-71 (103)
357 PF10579 Rapsyn_N: Rapsyn N-te 81.3 1.9 4E-05 29.7 2.8 48 487-534 18-68 (80)
358 PF07035 Mic1: Colon cancer-as 81.3 29 0.00062 28.5 15.0 38 126-163 16-53 (167)
359 smart00386 HAT HAT (Half-A-TPR 80.5 4.4 9.6E-05 21.9 4.0 30 489-518 1-30 (33)
360 COG2909 MalT ATP-dependent tra 80.3 83 0.0018 33.2 25.3 219 315-536 424-686 (894)
361 TIGR02508 type_III_yscG type I 80.3 18 0.0004 26.4 7.5 78 19-99 21-98 (115)
362 PF08311 Mad3_BUB1_I: Mad3/BUB 80.2 15 0.00033 28.5 8.0 43 493-535 81-125 (126)
363 PF13762 MNE1: Mitochondrial s 79.9 23 0.00049 28.2 8.8 76 143-218 43-128 (145)
364 PF04190 DUF410: Protein of un 79.5 47 0.001 29.9 15.0 84 237-335 87-170 (260)
365 KOG4077 Cytochrome c oxidase, 79.4 14 0.0003 28.3 7.0 60 390-451 67-126 (149)
366 PF07035 Mic1: Colon cancer-as 79.1 34 0.00074 28.1 15.2 51 345-395 93-143 (167)
367 PF12862 Apc5: Anaphase-promot 78.9 6.5 0.00014 28.6 5.3 54 485-538 8-70 (94)
368 PHA02875 ankyrin repeat protei 78.9 38 0.00082 33.0 12.4 133 25-165 17-158 (413)
369 COG2909 MalT ATP-dependent tra 78.4 96 0.0021 32.8 28.5 219 249-468 424-684 (894)
370 PF11207 DUF2989: Protein of u 78.3 23 0.0005 29.9 8.8 72 86-158 123-197 (203)
371 PF02284 COX5A: Cytochrome c o 78.3 15 0.00033 26.9 6.6 60 289-349 28-87 (108)
372 PF13762 MNE1: Mitochondrial s 77.7 34 0.00074 27.3 10.0 76 41-116 42-127 (145)
373 KOG1464 COP9 signalosome, subu 77.0 53 0.0011 29.1 18.2 250 255-510 42-338 (440)
374 COG0790 FOG: TPR repeat, SEL1 77.0 60 0.0013 29.7 19.0 77 461-540 173-268 (292)
375 PF14853 Fis1_TPR_C: Fis1 C-te 76.8 5.3 0.00011 25.3 3.7 33 511-543 3-35 (53)
376 PF10579 Rapsyn_N: Rapsyn N-te 76.6 8.7 0.00019 26.6 4.9 43 386-428 20-64 (80)
377 KOG2422 Uncharacterized conser 76.3 31 0.00067 34.2 10.1 119 384-503 250-406 (665)
378 PF09670 Cas_Cas02710: CRISPR- 76.0 55 0.0012 31.4 12.0 52 383-435 142-197 (379)
379 COG1747 Uncharacterized N-term 76.0 84 0.0018 30.9 22.5 175 270-453 65-249 (711)
380 PF07163 Pex26: Pex26 protein; 75.8 37 0.0008 30.3 9.6 84 414-498 90-181 (309)
381 KOG4507 Uncharacterized conser 75.8 7.8 0.00017 38.1 6.1 99 419-520 619-721 (886)
382 COG4455 ImpE Protein of avirul 75.1 45 0.00098 28.6 9.5 56 376-433 5-61 (273)
383 PF07163 Pex26: Pex26 protein; 75.1 35 0.00076 30.5 9.3 83 348-430 90-181 (309)
384 PF10345 Cohesin_load: Cohesin 75.0 1.1E+02 0.0024 31.8 29.9 19 282-300 372-390 (608)
385 TIGR03504 FimV_Cterm FimV C-te 74.2 8.6 0.00019 23.2 4.0 25 277-301 5-29 (44)
386 PF09477 Type_III_YscG: Bacter 73.9 34 0.00073 25.4 7.8 82 116-200 18-99 (116)
387 PRK10941 hypothetical protein; 73.8 26 0.00057 31.5 8.7 69 447-515 185-255 (269)
388 PF04910 Tcf25: Transcriptiona 71.8 94 0.002 29.6 17.2 57 379-435 110-167 (360)
389 COG5159 RPN6 26S proteasome re 71.8 76 0.0016 28.5 14.2 120 277-396 9-149 (421)
390 KOG3364 Membrane protein invol 70.9 17 0.00037 28.3 5.7 73 440-512 29-108 (149)
391 KOG1464 COP9 signalosome, subu 70.1 80 0.0017 28.1 14.4 182 283-465 39-253 (440)
392 PRK13800 putative oxidoreducta 70.1 1.8E+02 0.0038 32.0 26.1 257 260-538 624-881 (897)
393 cd08819 CARD_MDA5_2 Caspase ac 69.9 32 0.00068 24.5 6.4 64 124-189 22-85 (88)
394 KOG4521 Nuclear pore complex, 69.5 1.8E+02 0.004 32.0 14.8 123 410-534 986-1127(1480)
395 PF14561 TPR_20: Tetratricopep 69.4 40 0.00086 24.3 7.5 43 497-539 10-52 (90)
396 PF11846 DUF3366: Domain of un 69.4 22 0.00047 30.2 7.1 25 441-465 142-166 (193)
397 COG4976 Predicted methyltransf 69.3 10 0.00022 32.6 4.7 61 453-513 5-67 (287)
398 KOG4279 Serine/threonine prote 68.6 1.5E+02 0.0033 30.8 13.8 107 382-515 297-406 (1226)
399 smart00777 Mad3_BUB1_I Mad3/BU 67.4 53 0.0011 25.5 7.9 41 494-534 82-124 (125)
400 PF13934 ELYS: Nuclear pore co 67.4 87 0.0019 27.4 11.2 122 71-204 78-203 (226)
401 PF10366 Vps39_1: Vacuolar sor 67.2 51 0.0011 24.8 7.9 27 71-97 41-67 (108)
402 KOG0276 Vesicle coat complex C 67.1 48 0.001 33.1 9.2 132 39-195 615-746 (794)
403 PHA02875 ankyrin repeat protei 66.8 1.3E+02 0.0028 29.3 15.5 14 390-403 298-311 (413)
404 cd00280 TRFH Telomeric Repeat 66.6 75 0.0016 26.5 11.1 45 481-526 117-161 (200)
405 KOG4814 Uncharacterized conser 66.2 61 0.0013 32.7 9.7 85 455-539 366-458 (872)
406 KOG3824 Huntingtin interacting 65.8 9.9 0.00021 34.1 4.1 56 455-510 128-185 (472)
407 PRK13800 putative oxidoreducta 64.8 2.2E+02 0.0049 31.3 27.3 248 237-503 632-880 (897)
408 cd08819 CARD_MDA5_2 Caspase ac 64.4 35 0.00077 24.2 5.8 65 23-89 22-86 (88)
409 COG3947 Response regulator con 64.2 1.1E+02 0.0024 27.7 14.9 60 445-504 281-342 (361)
410 TIGR02710 CRISPR-associated pr 63.2 1.4E+02 0.003 28.5 11.3 26 381-406 139-164 (380)
411 PF14863 Alkyl_sulf_dimr: Alky 62.6 37 0.00081 27.0 6.5 62 460-524 58-119 (141)
412 PF04190 DUF410: Protein of un 62.5 1.2E+02 0.0026 27.3 15.2 141 280-436 19-170 (260)
413 PF10366 Vps39_1: Vacuolar sor 62.0 45 0.00098 25.0 6.6 27 374-400 41-67 (108)
414 KOG2396 HAT (Half-A-TPR) repea 61.5 1.7E+02 0.0037 28.8 32.9 242 287-537 298-558 (568)
415 PF11848 DUF3368: Domain of un 61.1 30 0.00065 21.3 4.6 33 115-147 13-45 (48)
416 PF10255 Paf67: RNA polymerase 61.0 48 0.001 31.8 8.0 29 508-536 163-191 (404)
417 KOG0686 COP9 signalosome, subu 60.7 1.4E+02 0.0031 28.4 10.6 60 39-98 151-216 (466)
418 smart00638 LPD_N Lipoprotein N 60.5 2.1E+02 0.0045 29.5 19.3 62 35-98 307-369 (574)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 60.5 77 0.0017 24.6 7.9 42 390-431 81-123 (126)
420 KOG0530 Protein farnesyltransf 60.2 1.3E+02 0.0027 26.9 12.0 74 473-546 110-184 (318)
421 KOG0376 Serine-threonine phosp 60.0 8.3 0.00018 37.0 2.9 100 414-516 11-113 (476)
422 KOG2066 Vacuolar assembly/sort 59.6 2.3E+02 0.005 29.7 30.7 170 75-270 362-535 (846)
423 KOG3807 Predicted membrane pro 59.0 65 0.0014 29.5 7.9 146 357-515 232-402 (556)
424 KOG2581 26S proteasome regulat 58.9 1E+02 0.0022 29.4 9.3 136 373-508 125-280 (493)
425 PF07720 TPR_3: Tetratricopept 58.8 32 0.0007 19.6 4.3 16 482-497 8-23 (36)
426 KOG2908 26S proteasome regulat 57.7 28 0.0006 32.0 5.5 52 452-503 84-143 (380)
427 COG0735 Fur Fe2+/Zn2+ uptake r 56.5 65 0.0014 25.8 7.1 64 90-154 7-70 (145)
428 PF08424 NRDE-2: NRDE-2, neces 55.1 1.8E+02 0.004 27.1 16.6 131 370-504 17-183 (321)
429 KOG4507 Uncharacterized conser 54.9 66 0.0014 32.1 7.8 135 404-541 568-708 (886)
430 KOG0687 26S proteasome regulat 54.5 1.8E+02 0.0039 26.9 12.8 22 446-467 107-128 (393)
431 PF11848 DUF3368: Domain of un 53.9 50 0.0011 20.3 5.1 34 281-314 12-45 (48)
432 KOG0376 Serine-threonine phosp 53.7 32 0.0007 33.2 5.6 103 379-486 11-116 (476)
433 PF12796 Ank_2: Ankyrin repeat 53.7 54 0.0012 23.2 5.8 51 48-104 4-54 (89)
434 KOG2297 Predicted translation 53.6 1.3E+02 0.0029 27.4 8.8 46 172-226 296-342 (412)
435 PRK10564 maltose regulon perip 53.6 29 0.00064 31.4 5.0 43 269-311 254-297 (303)
436 KOG0551 Hsp90 co-chaperone CNS 53.0 61 0.0013 29.8 6.8 85 451-535 89-179 (390)
437 COG4976 Predicted methyltransf 52.9 27 0.00059 30.1 4.4 52 417-470 5-56 (287)
438 PRK10564 maltose regulon perip 52.9 24 0.00052 31.9 4.4 41 172-212 259-299 (303)
439 PF10516 SHNi-TPR: SHNi-TPR; 52.5 32 0.0007 19.9 3.5 28 510-537 2-29 (38)
440 KOG0991 Replication factor C, 52.0 1.7E+02 0.0036 25.7 10.7 46 362-408 229-274 (333)
441 PF13934 ELYS: Nuclear pore co 51.7 1.7E+02 0.0036 25.7 12.6 32 455-486 152-183 (226)
442 PF14689 SPOB_a: Sensor_kinase 51.4 32 0.00069 22.6 3.8 26 410-435 26-51 (62)
443 PF07575 Nucleopor_Nup85: Nup8 51.3 2.9E+02 0.0063 28.4 17.6 75 292-368 391-465 (566)
444 PF09477 Type_III_YscG: Bacter 51.3 1E+02 0.0022 23.1 8.4 80 420-504 19-98 (116)
445 COG5191 Uncharacterized conser 51.2 34 0.00075 31.0 5.0 79 438-516 102-183 (435)
446 PF11846 DUF3366: Domain of un 51.1 58 0.0013 27.6 6.5 36 471-506 140-175 (193)
447 KOG4077 Cytochrome c oxidase, 50.6 1E+02 0.0022 23.8 6.6 45 471-515 80-124 (149)
448 KOG4642 Chaperone-dependent E3 49.8 1.8E+02 0.004 25.6 9.7 113 382-499 20-141 (284)
449 KOG1839 Uncharacterized protei 48.7 1.1E+02 0.0023 34.1 8.9 121 416-537 941-1085(1236)
450 cd00280 TRFH Telomeric Repeat 48.6 1.2E+02 0.0026 25.3 7.3 17 453-469 121-137 (200)
451 PRK13342 recombination factor 48.1 2.7E+02 0.006 27.1 16.2 42 173-214 230-274 (413)
452 KOG2758 Translation initiation 47.5 2.3E+02 0.005 26.1 13.3 165 328-504 22-196 (432)
453 PRK14956 DNA polymerase III su 46.7 1.5E+02 0.0033 29.4 9.1 36 105-140 249-284 (484)
454 PF11663 Toxin_YhaV: Toxin wit 46.6 27 0.00059 27.2 3.2 31 82-114 108-138 (140)
455 PF11768 DUF3312: Protein of u 46.5 2.5E+02 0.0054 28.2 10.3 23 346-368 413-435 (545)
456 KOG0292 Vesicle coat complex C 45.9 1.6E+02 0.0035 31.3 9.2 133 384-543 655-787 (1202)
457 KOG3364 Membrane protein invol 45.8 1.5E+02 0.0032 23.4 8.7 65 404-469 29-97 (149)
458 COG2912 Uncharacterized conser 45.7 86 0.0019 28.1 6.6 59 452-510 190-250 (269)
459 PF11817 Foie-gras_1: Foie gra 45.7 76 0.0017 28.2 6.6 21 413-433 184-204 (247)
460 PRK09462 fur ferric uptake reg 45.6 1.2E+02 0.0026 24.3 7.2 62 93-155 6-68 (148)
461 PF00244 14-3-3: 14-3-3 protei 45.2 2.2E+02 0.0048 25.2 14.5 162 378-540 7-200 (236)
462 KOG4279 Serine/threonine prote 44.5 4E+02 0.0087 28.0 12.4 188 327-538 184-395 (1226)
463 cd07153 Fur_like Ferric uptake 44.4 71 0.0015 24.2 5.5 51 6-56 3-53 (116)
464 KOG1524 WD40 repeat-containing 44.3 1.2E+02 0.0027 29.8 7.7 23 446-468 576-598 (737)
465 KOG2581 26S proteasome regulat 43.1 3.1E+02 0.0068 26.3 11.5 127 338-469 121-273 (493)
466 KOG1498 26S proteasome regulat 43.0 3.1E+02 0.0066 26.2 12.1 198 319-543 25-246 (439)
467 PF14689 SPOB_a: Sensor_kinase 42.8 42 0.00091 22.1 3.4 25 376-400 27-51 (62)
468 PRK11639 zinc uptake transcrip 42.5 90 0.0019 25.8 6.1 61 95-156 17-77 (169)
469 PF10475 DUF2450: Protein of u 42.1 1.6E+02 0.0034 27.1 8.2 55 42-98 102-156 (291)
470 KOG1463 26S proteasome regulat 41.9 3E+02 0.0064 25.8 11.3 93 412-504 133-238 (411)
471 COG0735 Fur Fe2+/Zn2+ uptake r 41.7 95 0.0021 24.9 5.9 44 72-115 23-66 (145)
472 PF01475 FUR: Ferric uptake re 41.6 69 0.0015 24.5 5.0 51 6-56 10-60 (120)
473 PF12926 MOZART2: Mitotic-spin 41.6 1.3E+02 0.0028 21.5 6.1 41 226-266 29-69 (88)
474 PF11817 Foie-gras_1: Foie gra 41.5 1.1E+02 0.0024 27.2 7.0 23 513-535 222-244 (247)
475 KOG1308 Hsp70-interacting prot 40.9 9.1 0.0002 35.0 0.0 64 485-548 124-187 (377)
476 PF02184 HAT: HAT (Half-A-TPR) 40.6 66 0.0014 17.9 3.4 21 388-410 3-23 (32)
477 KOG4567 GTPase-activating prot 40.3 3E+02 0.0065 25.3 9.3 43 125-167 264-306 (370)
478 KOG0686 COP9 signalosome, subu 39.8 3.5E+02 0.0076 26.0 14.7 16 420-435 317-332 (466)
479 PF08424 NRDE-2: NRDE-2, neces 39.7 3.2E+02 0.007 25.5 11.8 65 472-536 62-129 (321)
480 PF09670 Cas_Cas02710: CRISPR- 39.7 3.5E+02 0.0077 26.0 11.6 56 279-335 139-198 (379)
481 KOG0292 Vesicle coat complex C 39.6 4.2E+02 0.009 28.5 10.9 177 284-504 606-782 (1202)
482 KOG2659 LisH motif-containing 39.3 2.5E+02 0.0053 24.5 8.1 19 380-398 72-90 (228)
483 KOG0991 Replication factor C, 39.1 2.7E+02 0.0059 24.5 14.8 136 344-505 133-268 (333)
484 cd08326 CARD_CASP9 Caspase act 38.7 83 0.0018 22.3 4.5 62 23-88 19-80 (84)
485 PF10155 DUF2363: Uncharacteri 38.4 1.9E+02 0.0041 22.5 9.2 94 72-165 21-124 (126)
486 PF09454 Vps23_core: Vps23 cor 37.6 46 0.001 22.2 2.9 50 66-116 5-54 (65)
487 PF09986 DUF2225: Uncharacteri 37.6 2.7E+02 0.0059 24.1 10.6 60 410-470 121-192 (214)
488 KOG4567 GTPase-activating prot 37.4 3.3E+02 0.0072 25.0 9.1 41 226-266 264-304 (370)
489 KOG1498 26S proteasome regulat 37.1 3.8E+02 0.0083 25.6 15.4 56 415-470 179-239 (439)
490 PRK11639 zinc uptake transcrip 36.9 2.4E+02 0.0053 23.3 8.1 60 297-357 17-76 (169)
491 PRK09857 putative transposase; 36.8 1.7E+02 0.0038 26.8 7.5 62 481-542 212-273 (292)
492 COG5191 Uncharacterized conser 36.0 84 0.0018 28.6 5.0 79 403-483 103-184 (435)
493 COG5108 RPO41 Mitochondrial DN 35.9 2.7E+02 0.0058 28.7 8.8 100 245-347 33-144 (1117)
494 TIGR01503 MthylAspMut_E methyl 35.6 1.2E+02 0.0026 29.5 6.3 61 490-552 69-129 (480)
495 cd07153 Fur_like Ferric uptake 35.2 80 0.0017 23.9 4.5 41 114-154 10-50 (116)
496 KOG2297 Predicted translation 35.2 3.6E+02 0.0078 24.8 9.5 20 372-391 321-340 (412)
497 TIGR02270 conserved hypothetic 35.2 4.4E+02 0.0095 25.7 24.2 101 75-183 44-144 (410)
498 PF12862 Apc5: Anaphase-promot 35.2 1.7E+02 0.0037 21.1 8.0 53 383-435 9-69 (94)
499 PF12926 MOZART2: Mitotic-spin 34.5 1.6E+02 0.0034 21.0 5.1 46 20-65 25-70 (88)
500 PF04781 DUF627: Protein of un 34.3 2E+02 0.0044 21.7 8.3 42 494-535 63-104 (111)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-84 Score=678.52 Aligned_cols=536 Identities=33% Similarity=0.595 Sum_probs=521.5
Q ss_pred cchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhH
Q 045069 17 QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLL 96 (554)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 96 (554)
+++..+++++..+.+.|+.||+.++|.|+.+|++.|++++|.++|++|+.||+.+||++|.+|++.|++++|+++|++|.
T Consensus 201 ~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 201 PDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred cchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34455567777777777778888889999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHH
Q 045069 97 RTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSM 176 (554)
Q Consensus 97 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 176 (554)
+.|+.||..||+.++.+|++.|+++.+.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+||.+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCCh
Q 045069 177 ISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCM 256 (554)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 256 (554)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|+++|++
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 440 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhc
Q 045069 257 NSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG 336 (554)
Q Consensus 257 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 336 (554)
++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|
T Consensus 441 ~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999985 699999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045069 337 FELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416 (554)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 416 (554)
+.++..++++|+++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEI 496 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 496 (554)
|++.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+.+|+..+|.+|+.+|..+|+.+.++.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999965799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCeeeeecCCC
Q 045069 497 VAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVSGSSN 554 (554)
Q Consensus 497 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~~~ 554 (554)
..+++.+..|+++..|..|+++|...|+|++|.++.+.|.+.|++++||+|||+++|+
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999873
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-76 Score=619.94 Aligned_cols=532 Identities=26% Similarity=0.391 Sum_probs=501.0
Q ss_pred HHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHH
Q 045069 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDA 88 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 88 (554)
++..+...+.+..+.+++..+.+.+..++...+|.++..|++.|+++.|.++|++|++||+.+||.+|.+|++.|++++|
T Consensus 92 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A 171 (857)
T PLN03077 92 LFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171 (857)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHH
Confidence 33344444566677888888888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCC
Q 045069 89 KSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDP 168 (554)
Q Consensus 89 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 168 (554)
+++|++|.+.|+.||..||+.++.+|+..+++..+.+++..|.+.|+.||..++++||.+|++.|++++|.++|++|+.+
T Consensus 172 ~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~ 251 (857)
T PLN03077 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR 251 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHH
Q 045069 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248 (554)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (554)
|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHH
Q 045069 249 MYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 328 (554)
+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++
T Consensus 332 ~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH
Q 045069 329 HGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES 408 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 408 (554)
++.+.+.|+.|+..+|++|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.+|++|.+ ++.||..
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~ 490 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSV 490 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 5999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
||..++.+|++.|+.+.+.+++..+.+. |+.++..+++.++++|+++|+.++|.++|+++ .+|..+|+.++.+|.++
T Consensus 491 t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~ 567 (857)
T PLN03077 491 TLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAH 567 (857)
T ss_pred HHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHc
Confidence 9999999999999999999999999996 99999999999999999999999999998888 77888899999999999
Q ss_pred CChHHHHHHHHHHHhcC-CCCchhHHHHHHHHHccCChhHHHHHHHHHh-hcCCccCC
Q 045069 489 GNSDLAEIVAHQLFEND-PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV-DNGLRKEA 544 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 544 (554)
|+.++|.++|++|.+.. .++..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 568 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 568 GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999998888763 3455666777788888888888888888888 57777654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-76 Score=606.83 Aligned_cols=488 Identities=27% Similarity=0.449 Sum_probs=478.8
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcC-CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHH
Q 045069 66 QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQ-LKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSA 144 (554)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 144 (554)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchh
Q 045069 145 LVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVG 224 (554)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 224 (554)
|+.+|++.|++++|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 045069 225 QGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKA 304 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 304 (554)
.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|+.|.++|..+||.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHc
Q 045069 305 DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGL 384 (554)
Q Consensus 305 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 384 (554)
|..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+|++|+++|++.|++++|.++|++|.+||+.+||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYS 464 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 464 (554)
.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998767999999999999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 465 FIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
+++++...|+..+|..++.+|..+|+++.|..+++++.+..|++...|..|+.+|.+.|+|++|.+++++|.+.|+++.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecCC
Q 045069 545 GVSWVSGSS 553 (554)
Q Consensus 545 ~~s~~~~~~ 553 (554)
|+|||+++|
T Consensus 564 g~s~i~~~~ 572 (697)
T PLN03081 564 ACTWIEVKK 572 (697)
T ss_pred CeeEEEECC
Confidence 999999876
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-68 Score=549.78 Aligned_cols=507 Identities=17% Similarity=0.208 Sum_probs=444.8
Q ss_pred hcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCccc
Q 045069 32 ASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS-----VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFT 106 (554)
Q Consensus 32 ~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 106 (554)
....++...|..++..+++.|++++|.++|++|+.++ ...++.++.+|.+.|..++|..+++.|.. ||..+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~T 439 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLST 439 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHH
Confidence 3456777888888888899999999999999887544 44566777888899999999999988864 89999
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC----CCcchHHHHHHHHHh
Q 045069 107 YACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD----PDLVLCNSMISGFAH 182 (554)
Q Consensus 107 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 182 (554)
|+.++.+|++.|+++.|.++++.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999874 889999999999999
Q ss_pred CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHH--hcCCCchhHHHHHHHHHHhcCChhhHH
Q 045069 183 CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLK--SSFDSYDYVSSVLVSMYARCNCMNSAY 260 (554)
Q Consensus 183 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~ 260 (554)
.|++++|.++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.||..+|+.++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999976 578899999999999999999999999
Q ss_pred HHHhhc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhc
Q 045069 261 HVFNSL----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG 336 (554)
Q Consensus 261 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 336 (554)
++|+.| ..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999988 4577889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHhccC----CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 045069 337 FELSVMVSSALVDMYSKCGYLGLGIQVFETMS----ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSA 412 (554)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 412 (554)
+.|+..+|+++|.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999885 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----c-------------------CChHHHHHHHHhC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----A-------------------GNLEEAYSFIWSL 469 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~ 469 (554)
++.+|++.|++++|.+++++|.+. |+.||..+|+.++..+.+ + +..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 999999999999999999999886 999999999998865431 1 2246799999998
Q ss_pred C---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCC
Q 045069 470 P---KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN-DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAG 545 (554)
Q Consensus 470 ~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 545 (554)
. ..|+..+|..++.++...+..+.+...++.+... .+++...|..|++.+.+. .++|..++++|.+.|+.|+..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 6 4799999999998888888898888888876544 567778889998887332 368999999999999998875
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.2e-68 Score=545.61 Aligned_cols=497 Identities=15% Similarity=0.186 Sum_probs=468.1
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhcC-CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 045069 6 HFLVLELSKSHQSLSRTKELHALVAKASL-LRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHR 84 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 84 (554)
+..+...+.++|+++++.++++.|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|+.||..+||.+|.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 33444555677999999999999999995 67888899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcc
Q 045069 85 FNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 85 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
+++|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC----CCcchHHHHHHHHHhCCChhhHHHHHHHHHH--CCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCC
Q 045069 165 VSD----PDLVLCNSMISGFAHCGFWDKSLQLFDWMLR--LGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDS 238 (554)
Q Consensus 165 ~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 238 (554)
|.+ ||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|+++.|.++++.|.+.|+.|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 964 9999999999999999999999999999976 6899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSL----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLA 314 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 314 (554)
+..+|+.++.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999 468999999999999999999999999999999999999999999999
Q ss_pred HHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC----CCCcchHHHHHHHHHcCCChHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS----ERNIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 390 (554)
+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|+++.
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999987 4999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhc----C-------------------CchHHHHHHHHHhHHHhCCCCChhHHH
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCH----G-------------------GLVNDGREIFTRMTEEYGIQAKTEHYI 447 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (554)
|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+. |+.||..+|+
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-Gi~Pd~~T~~ 851 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-GTLPTMEVLS 851 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-CCCCCHHHHH
Confidence 99999999999999999999999876542 1 2246799999999996 9999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLP---KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
.++.++.+.+..+.+.++++.+. ..++..+|+.++.++.+. .++|..++++|.+..
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 99999989999999999999875 367788999999998432 468999999999983
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.9e-65 Score=519.87 Aligned_cols=433 Identities=21% Similarity=0.333 Sum_probs=417.5
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChH
Q 045069 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFN 86 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 86 (554)
..++..+...++++.+.+++..|.+.|+.||+.+|+.|+.+|++.|++++|.++|++|++||..+||+++.+|++.|+++
T Consensus 127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~ 206 (697)
T PLN03081 127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYR 206 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHH
Confidence 35555666667788889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccC
Q 045069 87 DAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVS 166 (554)
Q Consensus 87 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 166 (554)
+|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.
T Consensus 207 ~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 286 (697)
T PLN03081 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286 (697)
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHH
Q 045069 167 DPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVL 246 (554)
Q Consensus 167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 246 (554)
++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..+.+.|+.||..++++|
T Consensus 287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhH
Q 045069 247 VSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGA 326 (554)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 326 (554)
+++|+++|++++|.++|++|.++|..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hcCCchHHHHHHHHHHHHccCChHHHHHHHhccC-CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 045069 327 VIHGYVIQ-HGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS-ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN 404 (554)
Q Consensus 327 ~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 404 (554)
++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|. +|+..+|++|+.+|...|+++.|..+++++.+ +.
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~ 524 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MG 524 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CC
Confidence 99999986 6999999999999999999999999999999997 69999999999999999999999999999976 66
Q ss_pred CC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC
Q 045069 405 PD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK 442 (554)
Q Consensus 405 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 442 (554)
|+ ..+|..++..|++.|++++|.++++.|.++ |+...
T Consensus 525 p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 75 569999999999999999999999999996 87643
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-33 Score=303.66 Aligned_cols=523 Identities=11% Similarity=0.006 Sum_probs=312.4
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhc
Q 045069 6 HFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALA 82 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 82 (554)
...+..++...++.+.+....+.+.+.. +.++..+..+...+.+.|++++|.+.|+++. +.+...+..+...+...
T Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 410 (899)
T TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ 410 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Confidence 3456667777888888877777776543 4566777788888888888888888887754 23445666677777777
Q ss_pred CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhh
Q 045069 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVF 162 (554)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 162 (554)
|++++|++.++.+.+.... +......++..+.+.|++++|..+++.+.... +++..++..+...+...|++++|...|
T Consensus 411 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 488 (899)
T TIGR02917 411 GDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAF 488 (899)
T ss_pred CChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7777777777777665322 22344445566666777777777777666543 335566666667777777777777777
Q ss_pred cccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCc
Q 045069 163 DGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSY 239 (554)
Q Consensus 163 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 239 (554)
+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.++|...+..+.+.+ +.+
T Consensus 489 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 566 (899)
T TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQE 566 (899)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 66543 234445556666666666666666666665542 2244555556666666666666666666655543 233
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045069 240 DYVSSVLVSMYARCNCMNSAYHVFNSLF---HPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316 (554)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 316 (554)
...+..++..|.+.|++++|..+++.+. +.+...|..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4455556666666666666666666552 2344556666666666666666666666665432 22344555555566
Q ss_pred hccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHH
Q 045069 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
...|++++|...++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|.+
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHH
Confidence 66666666666666665543 33445555566666666666666666655542 233445555555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 045069 394 FFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--K 471 (554)
Q Consensus 394 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 471 (554)
.|+++.+. .|+..++..+..++.+.|++++|.+.++++.+. .+.+...+..++..|...|++++|.+.|+++. .
T Consensus 725 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 725 AYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 66665552 344444555555555566666666666555552 34445555555555555666666666655543 2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
++++..+..++..+...|+ .+|+..++++.+..|+++..+..++.++...|++++|.++++++++.++
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4445555555555555555 5555555555555555555555555555555555555555555555443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-33 Score=301.23 Aligned_cols=519 Identities=13% Similarity=0.031 Sum_probs=389.0
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcC
Q 045069 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ---RSVFLWNSIIRAYALAH 83 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~ 83 (554)
..+...+...++.+.+...++.+.+.. +.++..+..+...+...|++++|.+.|+.... .....+..++..+.+.|
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence 345666677788888877777776543 34566677777788888888888888876542 23345566777788888
Q ss_pred ChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhc
Q 045069 84 RFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFD 163 (554)
Q Consensus 84 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 163 (554)
++++|+.+++.+... .+++..++..+...+...|++++|.+.++.+.+... .+...+..+...+...|++++|.+.|+
T Consensus 446 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 446 QFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888765 344666777788888888888888888888776543 345566677778888888888888888
Q ss_pred ccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCch
Q 045069 164 GVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYD 240 (554)
Q Consensus 164 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 240 (554)
++.+ .+..++..+...+.+.|+.++|...++++...+ +.+...+..+...+...|+++.|..+++.+.+.. +.+.
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 601 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSP 601 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence 7754 355667777788888888888888888876653 3345566677778888888888888888776543 4456
Q ss_pred hHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 045069 241 YVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAA 317 (554)
Q Consensus 241 ~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 317 (554)
..+..+..+|...|++++|...|+.+ .+.+...+..+...+.+.|++++|...++++.+.. +.+..++..+...+.
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 77788888888888888888888776 23455667777888888888888888888877643 334667777788888
Q ss_pred ccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHH
Q 045069 318 KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFF 395 (554)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 395 (554)
..|+++.|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+.+.. |+..++..++.++.+.|++++|.+.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888888888888887765 45666777778888888888888888887663 55567777778888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC
Q 045069 396 RDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPV 473 (554)
Q Consensus 396 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~ 473 (554)
+++.+. .+.+...+..+...|...|++++|...|+++.+. .+++..++..++..+...|+ .+|+++++++. .+.
T Consensus 760 ~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 760 EAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 888774 2345567777778888888888888888888773 45667778888888888888 77888887753 245
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++..+..+...+...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++|+
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666777777788888888888888888888888888888888888888888888888888775
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=3e-24 Score=231.48 Aligned_cols=522 Identities=11% Similarity=0.010 Sum_probs=297.5
Q ss_pred HHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC--CCCc-chH-------------
Q 045069 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP--QRSV-FLW------------- 72 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~-~~~------------- 72 (554)
..++....++.+.+++.++.+.... +.++..+..+...+.+.|+.++|.+.+++.. .|+. ..+
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCch
Confidence 3455556677777777777666543 4578888889999999999999999998876 2332 221
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHH
Q 045069 73 ---NSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNF-TYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTA 148 (554)
Q Consensus 73 ---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 148 (554)
....+.+...|++++|+..|+.+.+.+ +|+.. ............|+.++|...++.+.+..+. +...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 223446788999999999999998753 33322 1111222233568999999999999988633 66778888999
Q ss_pred HHcCCCHhHHHHhhcccCC-CCc-----c-----------------hHH-------------------------------
Q 045069 149 YSKLSLIDEAIKVFDGVSD-PDL-----V-----------------LCN------------------------------- 174 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~-~~~-----~-----------------~~~------------------------------- 174 (554)
+...|+.++|+..++++.+ +.. . .+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 9999999999999987643 110 0 000
Q ss_pred ---HHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCch-hHH-------
Q 045069 175 ---SMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYD-YVS------- 243 (554)
Q Consensus 175 ---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------- 243 (554)
.....+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++...+....... ..+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 01122344455555555555554431 113344445555555555555555555555544322111 101
Q ss_pred -----HHHHHHHHhcCChhhHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045069 244 -----SVLVSMYARCNCMNSAYHVFNSLF---HPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAA 315 (554)
Q Consensus 244 -----~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 315 (554)
......+.+.|++++|...|++.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 111233445555555555555541 1233444445555555555555555555555432 1122233333333
Q ss_pred HhccCCcchhHHHHHHHHHhcCC--------chHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHc
Q 045069 316 AAKSANVWPGAVIHGYVIQHGFE--------LSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGL 384 (554)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 384 (554)
+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++..+ | +...+..+...|.+
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 32 23445555554443221100 0012233445556667777777777776653 3 23455666777777
Q ss_pred CCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC-------------------------
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYG------------------------- 438 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------------- 438 (554)
.|++++|...++++.+. .|+ ...+..+...+...++.++|...++.+... .
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 77777777777777763 343 334444444556677777777777765321 1
Q ss_pred --------------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045069 439 --------------IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLF 502 (554)
Q Consensus 439 --------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (554)
.+.+...+..+...+.+.|++++|++.++++. .+.++..+..++..+...|++++|++.++++.
T Consensus 585 ~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 585 DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 12233344445555555566666666655543 24445555566666666666666666666666
Q ss_pred hcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 503 ENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 503 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+..|+++..+..++.++...|++++|.+++++++...
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 6566666666666666666666666666666665543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=4.3e-24 Score=230.30 Aligned_cols=517 Identities=12% Similarity=0.036 Sum_probs=371.6
Q ss_pred HHHHHHhhhccchhhHHHHHHHHHHhcCCCChhH-HHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhc
Q 045069 7 FLVLELSKSHQSLSRTKELHALVAKASLLRDPFY-ATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALA 82 (554)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 82 (554)
+.+..++...++.+.|.+.++...+.. +|+... ...+.......|+.++|++.++++. +.+...+..+...+...
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 345567888899999998888887653 333322 1122222334589999999999876 23556788888899999
Q ss_pred CChHHHHHHHHHhHHcCC------------------C--------------CCcccH---------------------HH
Q 045069 83 HRFNDAKSLFKNLLRTQL------------------K--------------PDNFTY---------------------AC 109 (554)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~---------------------~~ 109 (554)
|+.++|+..++++.+... . |+.... ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 999999999998755321 0 111000 01
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CCcc---hHH----------
Q 045069 110 ITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PDLV---LCN---------- 174 (554)
Q Consensus 110 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~---------- 174 (554)
....+...|++++|...+++..+..+ .+...+..+..++.+.|++++|+..|++..+ |+.. .|.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 12334566788888888888777643 2667777777888888888888888877654 3221 121
Q ss_pred --HHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045069 175 --SMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYAR 252 (554)
Q Consensus 175 --~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (554)
.....+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.++.+.+.... +...+..+...|.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~- 430 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-
Confidence 11345667788888888888877653 223445666677777888888888888887776432 3445555666654
Q ss_pred cCChhhHHHHHhhcCCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC
Q 045069 253 CNCMNSAYHVFNSLFHPD------------LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA 320 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 320 (554)
.++.++|...++.+.... ...+..+...+...|++++|...+++..+.. +-+...+..+...+.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 356777877777663321 1234455667788999999999999988763 224556777888899999
Q ss_pred CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC----Cc---------chHHHHHHHHHcCCC
Q 045069 321 NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER----NI---------ITYNSVILGLGLHGF 387 (554)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~ 387 (554)
++++|...++.+.+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999988754 334444555555677889999999999887632 11 112345667888999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (554)
.++|..+++. .+++...+..+...+.+.|++++|+..|++..+. -+.+...+..++..|...|++++|++.++
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999998872 3445567788888999999999999999999883 45568889999999999999999999999
Q ss_pred hCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc------hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 468 SLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG------AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 468 ~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.+.. +.+...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|++.+++.+.
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8753 45667778888889999999999999999999866544 3666778999999999999999999975
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=1.5e-21 Score=201.31 Aligned_cols=521 Identities=10% Similarity=-0.048 Sum_probs=351.7
Q ss_pred hHHHHHHHhhhc-cchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC--CCCcchHHHHHHHHHh
Q 045069 5 LHFLVLELSKSH-QSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP--QRSVFLWNSIIRAYAL 81 (554)
Q Consensus 5 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~ 81 (554)
.++.+...+... |++..|...++...+... -++.++..|...|.+.|+.++|+..+++.. .|+-..|..++..+
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-- 121 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVP-DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh--
Confidence 333444444444 888888888888877653 347778888889999999999988888765 33323333333222
Q ss_pred cCChHHHHHHHHHhHHcCC------------------------------------CC--CcccHHHH-HHHhhcCCChhh
Q 045069 82 AHRFNDAKSLFKNLLRTQL------------------------------------KP--DNFTYACI-TRACSENSDLPG 122 (554)
Q Consensus 82 ~~~~~~a~~~~~~m~~~~~------------------------------------~p--~~~~~~~l-l~~~~~~~~~~~ 122 (554)
+++.+|..+++++..... .| +....... ...|.+.|+++.
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 666677777777655421 11 12222222 455666677777
Q ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHc-CCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 045069 123 LRFVHGGAIVSGLGRDSITSSALVTAYSK-LSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGK 201 (554)
Q Consensus 123 a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 201 (554)
|..++..+.+.++. +......|..+|.. .++ +.+..+++...+.++..+..+...+.+.|+.++|..+++++.....
T Consensus 201 Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 201 ADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 77777777777633 34445555556666 355 7777776654445777788889999999999999999988755422
Q ss_pred C-CChhhHHHHHH------------------------------HcccCCccchhhHHH----------------------
Q 045069 202 T-PDEYTLVGLIS------------------------------GLWEPSLLSVGQGIH---------------------- 228 (554)
Q Consensus 202 ~-p~~~~~~~ll~------------------------------~~~~~~~~~~a~~~~---------------------- 228 (554)
. |+..++.-++. .+.+.++++.++++.
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 2 33333322221 222333333333221
Q ss_pred -------HHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC--C----ChhhHHHHHHHHHhcCC---HHHHHH
Q 045069 229 -------GFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH--P----DLVTWSALITGYSQQGD---YGKALY 292 (554)
Q Consensus 229 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~---~~~a~~ 292 (554)
..+.+. .+.+.....-+.....+.|+.++|.++|+...+ + +...-..++..|.+.+. ..++..
T Consensus 359 ~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 359 AEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 111111 011233333344445678999999999998843 2 22334466777777665 334433
Q ss_pred H----------------------HHHHHh-CCC-CC--CHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHH
Q 045069 293 Y----------------------FRKLNM-QGK-KA--DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSA 346 (554)
Q Consensus 293 ~----------------------~~~m~~-~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (554)
+ +..... .+. ++ +...+..+..++.. ++..+|...+....... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 3 111111 112 23 56667777766665 78888999888777664 44444444
Q ss_pred HHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCch
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLV 423 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~ 423 (554)
+...+...|++++|...|+++.. |+...+..+...+.+.|+.++|...+++..+. .|+.. .+..+...+...|++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCH
Confidence 55556789999999999987663 45556667778888999999999999999885 35443 344444455677999
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
++|...+++..+ ..|+...+..+..++.+.|+.++|+..+++.. .|.++..+..+..++...|+.++|+..++++
T Consensus 593 ~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999976 45678889999999999999999999999864 3667788888888999999999999999999
Q ss_pred HhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 502 FENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 502 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
++..|+++.++..++.++...|++++|+..++++++..+
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999987664
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.2e-20 Score=194.61 Aligned_cols=476 Identities=10% Similarity=-0.006 Sum_probs=337.5
Q ss_pred HHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhH
Q 045069 47 LYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGL 123 (554)
Q Consensus 47 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 123 (554)
.+...|++++|+..|+... +.+..++..+.+.|...|++++|+..+++..+. .|+...|..++..+ ++.++|
T Consensus 53 ~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA 127 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKS 127 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhH
Confidence 3344599999999999865 335678899999999999999999999999885 45555555544333 888999
Q ss_pred HHHHHHHHHhcCCCCHhHHHHHHHH--------HHcCCCHhHHHHhhcccCCCC--cchHHHH-HHHHHhCCChhhHHHH
Q 045069 124 RFVHGGAIVSGLGRDSITSSALVTA--------YSKLSLIDEAIKVFDGVSDPD--LVLCNSM-ISGFAHCGFWDKSLQL 192 (554)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~ 192 (554)
..+++++.+..+. +..++..+... |.+.++..++++ .+...|+ ....... ...|.+.|++++|++.
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l 204 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL 204 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999998643 45555555555 777767777776 3333343 4444444 8999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHccc-CCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC---
Q 045069 193 FDWMLRLGKTPDEYTLVGLISGLWE-PSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH--- 268 (554)
Q Consensus 193 ~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--- 268 (554)
+.++.+.+.. +..-...+-..+.. .++ +.+..++. ..+..++.+...+...|.+.|+.++|.++++++..
T Consensus 205 L~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~----~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 205 YNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQS----QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhc----hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 9999997533 33335555556665 355 55655533 24446888899999999999999999999988722
Q ss_pred --CChhh--HH----------------------------HHHHHH-----------------------------------
Q 045069 269 --PDLVT--WS----------------------------ALITGY----------------------------------- 281 (554)
Q Consensus 269 --~~~~~--~~----------------------------~l~~~~----------------------------------- 281 (554)
|...+ |+ .++..+
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 11111 00 001222
Q ss_pred ----------------------------HhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCcchhHHH---
Q 045069 282 ----------------------------SQQGDYGKALYYFRKLNMQ--GKKADPVLIASVLAAAAKSANVWPGAVI--- 328 (554)
Q Consensus 282 ----------------------------~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~--- 328 (554)
.+.|+.++|..+++..... ...++.....-++..+.+.+......++
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 2334455555555554431 1223333444666666666552222221
Q ss_pred ----------------------HHHHHHh-cC-Cc--hHHHHHHHHHHHHccCChHHHHHHHhccC--CCCcchHHHHHH
Q 045069 329 ----------------------HGYVIQH-GF-EL--SVMVSSALVDMYSKCGYLGLGIQVFETMS--ERNIITYNSVIL 380 (554)
Q Consensus 329 ----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~ 380 (554)
+...... +. ++ +...|..+..++.. ++.++|...+.+.. .|+......+..
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~ 517 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAY 517 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 1111111 11 23 56778888888877 89999999777665 365443333445
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (554)
.+...|++++|...|+++.. ..|+...+..+...+.+.|++++|...+++..+. .+++...+..+.....+.|+++
T Consensus 518 al~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHH
Confidence 55689999999999999876 3566566777778889999999999999999873 2333444444444555679999
Q ss_pred HHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 461 EAYSFIWSLP-KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 461 ~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+|+..+++.. ..|+...+..+..++.+.|+.++|+..++++++.+|+++..+..++.++...|++++|++.++++++..
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999865 356788999999999999999999999999999999999999999999999999999999999998876
Q ss_pred Cc
Q 045069 540 LR 541 (554)
Q Consensus 540 ~~ 541 (554)
+.
T Consensus 674 P~ 675 (987)
T PRK09782 674 PD 675 (987)
T ss_pred CC
Confidence 53
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.8e-22 Score=185.21 Aligned_cols=443 Identities=11% Similarity=0.047 Sum_probs=349.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHc
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSK 151 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 151 (554)
...+..-..+.|++++|++.-...-+.+ +.+....-.+-..+.+..+.+.....-....+.. +.-.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445556667899999988877665543 2233333334445555555555544433333332 3356788889999999
Q ss_pred CCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHH-HHcccCCccchhhHH
Q 045069 152 LSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLI-SGLWEPSLLSVGQGI 227 (554)
Q Consensus 152 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~ 227 (554)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+ ..+-..|+..+|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988876 3567888888999999999999999888766 456655433322 233456788888888
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 045069 228 HGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPD---LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKA 304 (554)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 304 (554)
+...++... .-...|+.|...+...|+...|+..|++...-| ...|-.|...|...+.+++|+..|.+.... +|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 777766543 345678888889999999999999999985433 457888889999999999999999887654 56
Q ss_pred CH-HHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHH
Q 045069 305 DP-VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVIL 380 (554)
Q Consensus 305 ~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 380 (554)
+. ..+..+...|...|.++.|...+++..+.. +--+..|+.|..++...|+..+|.+.|.+... | ...+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 54 467777778889999999999999998875 34467899999999999999999999998774 3 4568889999
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCC
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGN 458 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 458 (554)
.|...|.++.|..+|....+ +.|... .++.|...|-+.|++++|+..+++..+ +.|+ ...|+.+...|...|+
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998 788765 789999999999999999999999865 7777 6789999999999999
Q ss_pred hHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhH
Q 045069 459 LEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 459 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 527 (554)
.+.|++.+.+... +.-...+..|.+.|...|+..+|++.|+.+++++|+.+..+..++.++.-..+|.+
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999988652 55677889999999999999999999999999999999999999888766665554
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=9.4e-21 Score=174.04 Aligned_cols=420 Identities=13% Similarity=0.103 Sum_probs=339.1
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCC
Q 045069 109 CITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGF 185 (554)
Q Consensus 109 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~ 185 (554)
.|..-.-+.|++++|++.-...-..+. .+....-.+-..+....+.+.....-....+ ....+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCC-CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 344445578999999988776655442 2233333334455555555554433222222 345689999999999999
Q ss_pred hhhHHHHHHHHHHCCCCC-ChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchh-HHHHHHHHHHhcCChhhHHHHH
Q 045069 186 WDKSLQLFDWMLRLGKTP-DEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDY-VSSVLVSMYARCNCMNSAYHVF 263 (554)
Q Consensus 186 ~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 263 (554)
+++|+.+++.+.+. +| ....|..+..++...|+.+.|...+...++.. |+.. ..+.+.......|++.+|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999885 44 45688899999999999999999998877654 3332 3344555666789999999998
Q ss_pred hhcCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc
Q 045069 264 NSLFH--P-DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL 339 (554)
Q Consensus 264 ~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (554)
.+..+ | -...|+.|...+-.+|+...|+..|++.... .|+ ...|..+-..|...+.++.|...+.+..... +-
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn 284 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PN 284 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Cc
Confidence 88744 3 3467999999999999999999999998764 455 3478888888889999999999988877654 44
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc-chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI-ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLC 415 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~ 415 (554)
...++..+...|-..|.++.|+..|++..+ |+. ..|+.|..++...|++.+|...|.+.+. +.|+.. +.+.|..
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgn 362 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGN 362 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHH
Confidence 567788888889999999999999999874 553 5899999999999999999999999998 667654 7888999
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSD 492 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 492 (554)
.+...|.+++|..+|....+ +.|. ...++.|...|..+|++++|+..+++.. .+.-...+..+...|-..|+.+
T Consensus 363 i~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999866 4454 6778999999999999999999999864 3556788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 493 LAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 493 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.|.+.+.+++..+|.-...+..|+.+|...|+..+|+.-++..++..+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999999999999886544
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=8e-20 Score=185.41 Aligned_cols=251 Identities=14% Similarity=0.071 Sum_probs=193.8
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH
Q 045069 284 QGDYGKALYYFRKLNMQG-KKAD-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI 361 (554)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (554)
.+++++|...|++..+.+ ..|+ ...+..+...+...|++++|...++...+.. +.....|..+...+...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887654 2333 3456666667778888888888888887664 334567777888888889999999
Q ss_pred HHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHh
Q 045069 362 QVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEY 437 (554)
Q Consensus 362 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 437 (554)
..|+...+ .+...|..+...+...|++++|+..|++.++ ..|+ ...+..+...+.+.|++++|+..|++..+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 98887653 3456788888889999999999999999988 4554 456777888888999999999999998873
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC-hhh-------HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVD-PAV-------SGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
.+.+...++.+..++...|++++|++.|++... .|+ ... +......+...|++++|.+.++++++.+|++
T Consensus 463 -~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 463 -FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred -CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 455678888899999999999999999988532 221 111 1112222344689999999999999999999
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
...+..++.++.+.|++++|++++++..+..
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999987653
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=2e-20 Score=180.46 Aligned_cols=295 Identities=14% Similarity=0.138 Sum_probs=228.8
Q ss_pred HHHhcCChhhHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCc
Q 045069 249 MYARCNCMNSAYHVFNSLFH---PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD---PVLIASVLAAAAKSANV 322 (554)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~ 322 (554)
.+...|++++|...|+++.+ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 35566777888888877732 3445677788888888888888888888876543222 24567777788888888
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc------chHHHHHHHHHcCCChHHHHHH
Q 045069 323 WPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI------ITYNSVILGLGLHGFTYQAFEF 394 (554)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~------~~~~~l~~~~~~~~~~~~a~~~ 394 (554)
+.|..+++.+.+.. +.+..++..++.++.+.|++++|.+.++.+.+ |+. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888887653 45667788888888888999999888888764 221 1345677778889999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CC
Q 045069 395 FRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KP 472 (554)
Q Consensus 395 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 472 (554)
++++.+. .|+ ...+..+...+.+.|++++|.++++++.+. +......++..++.+|...|++++|.+.++++. ..
T Consensus 203 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 203 LKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999884 344 457788889999999999999999999873 222224667889999999999999999999865 35
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc--cCChhHHHHHHHHHhhcCCccCCCee
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE--DGRWDDVMKLRDDIVDNGLRKEAGVS 547 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~s 547 (554)
|+...+..++..+.+.|++++|...++++++..|++......+...+.. .|+.++|..+++++.+++++++|.+.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 6666778888999999999999999999999999887655555433322 56999999999999999999998643
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=2e-19 Score=173.58 Aligned_cols=302 Identities=14% Similarity=0.094 Sum_probs=178.8
Q ss_pred HHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCC---HhHHHHHHHHHHcC
Q 045069 76 IRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD---SITSSALVTAYSKL 152 (554)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 152 (554)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334556777888888888887753 22445677777777778888888888777776432221 24566677777777
Q ss_pred CCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHH
Q 045069 153 SLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHG 229 (554)
Q Consensus 153 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 229 (554)
|++++|+.+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+..+.....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------- 179 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI--------------------- 179 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH---------------------
Confidence 777777777777754 34556777777777778888887777777654322111000
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 045069 230 FCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLI 309 (554)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 309 (554)
... +..+...+.+.|++++|...++++.+.. +.+...+
T Consensus 180 ----------~~~-------------------------------~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 217 (389)
T PRK11788 180 ----------AHF-------------------------------YCELAQQALARGDLDAARALLKKALAAD-PQCVRAS 217 (389)
T ss_pred ----------HHH-------------------------------HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHH
Confidence 001 2223333344444444444444443321 1122233
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC--CCCcchHHHHHHHHHcCCC
Q 045069 310 ASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS--ERNIITYNSVILGLGLHGF 387 (554)
Q Consensus 310 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 387 (554)
..+...+.+.|++++|..+++++.+.+......+++.++.+|.+.|++++|...++.+. .|+...+..++..+.+.|+
T Consensus 218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~ 297 (389)
T PRK11788 218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG 297 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC
Confidence 33444444444444444444444433322223445566666666677777766666655 2555555666777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---CCchHHHHHHHHHhHHHhCCCCChh
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCH---GGLVNDGREIFTRMTEEYGIQAKTE 444 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~ 444 (554)
+++|..+++++.+ ..|+..++..++..+.. .|+.+++..+++++.++ ++.|++.
T Consensus 298 ~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 298 PEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 7777777777776 35777777766666553 44777777777777765 6666554
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.5e-18 Score=175.49 Aligned_cols=351 Identities=11% Similarity=-0.025 Sum_probs=242.5
Q ss_pred cCCCHhHHHHhhcccCC------CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchh
Q 045069 151 KLSLIDEAIKVFDGVSD------PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVG 224 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 224 (554)
+..+|+.-.-+|..-++ .+......++..+.+.|++++|+.+++........+. ..+..+..+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHH
Confidence 34455544444444433 2233344556667777777777777777766533332 2333344455567777777
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 045069 225 QGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLF---HPDLVTWSALITGYSQQGDYGKALYYFRKLNMQG 301 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 301 (554)
...++.+.+..+ .+...+..+...+...|++++|...+++.. +.+...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 777777766542 345566777778888888888888888772 3456677788888888888888888888776554
Q ss_pred CCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHH
Q 045069 302 KKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSV 378 (554)
Q Consensus 302 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l 378 (554)
..+. ..+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.... .+...+..+
T Consensus 175 P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPRG-DMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCCH-HHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3222 222222 34677888888888888877664334444555566778888888888888887663 344567778
Q ss_pred HHHHHcCCChHH----HHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 379 ILGLGLHGFTYQ----AFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 379 ~~~~~~~~~~~~----a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
...+...|++++ |...+++..+ ..|+ ...+..+...+...|++++|...+++..+. -+.+...+..+..++
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 888888888875 7888888887 4555 447888888888899999999999888773 344466677788888
Q ss_pred HhcCChHHHHHHHHhCC-CCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 454 GLAGNLEEAYSFIWSLP-KPVDP-AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
.+.|++++|++.++++. ..|+. ..+..+..++...|+.++|...|+++.+..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88999999999888865 33443 3344456678888999999999999998888764
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=1.7e-17 Score=171.52 Aligned_cols=396 Identities=10% Similarity=0.019 Sum_probs=186.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcC
Q 045069 73 NSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKL 152 (554)
Q Consensus 73 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 152 (554)
.-.+......|+.++|++++....... +.+...+..+...+...|++++|..+++...+.. +.+...+..+..++...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334555556667777776666665421 2233346666666666667777766666666553 22344555566666666
Q ss_pred CCHhHHHHhhcccCC--C-CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHH
Q 045069 153 SLIDEAIKVFDGVSD--P-DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHG 229 (554)
Q Consensus 153 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 229 (554)
|++++|+..+++..+ | +.. +..+..++...|+.++|+..+++..+. .|+.
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~------------------------ 149 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQT------------------------ 149 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC------------------------
Confidence 666666666666543 2 233 555556666666666666666666553 2322
Q ss_pred HHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC-CCh------hhHHHHHHHHH-----hcCCH---HHHHHHH
Q 045069 230 FCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH-PDL------VTWSALITGYS-----QQGDY---GKALYYF 294 (554)
Q Consensus 230 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~-----~~g~~---~~a~~~~ 294 (554)
...+..+..++...+..+.|.+.++.... |+. .....++.... ..+++ ++|+..+
T Consensus 150 ----------~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 150 ----------QQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred ----------HHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHH
Confidence 22223344445555555666665555433 110 01111111111 11223 5566666
Q ss_pred HHHHhC-CCCCCHH-HHH----HHHHHHhccCCcchhHHHHHHHHHhcCC-chHHHHHHHHHHHHccCChHHHHHHHhcc
Q 045069 295 RKLNMQ-GKKADPV-LIA----SVLAAAAKSANVWPGAVIHGYVIQHGFE-LSVMVSSALVDMYSKCGYLGLGIQVFETM 367 (554)
Q Consensus 295 ~~m~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 367 (554)
+.+.+. ...|+.. .+. ..+.++...|+.++|...|+.+.+.+.+ |+. ....+..+|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666543 1122211 110 0122333445555555555555554321 111 1111344555555555555555554
Q ss_pred CC--CCc-----chHHHHHHHHHcCCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHhcCCchHHH
Q 045069 368 SE--RNI-----ITYNSVILGLGLHGFTYQAFEFFRDIIEKG-----------LNPDE---STFSALLCACCHGGLVNDG 426 (554)
Q Consensus 368 ~~--~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~~~~~~a 426 (554)
.+ |.. .....+..++...|++++|..+++++.+.. -.|+. ..+..+...+...|++++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 32 111 123334444555555555555555555421 01111 1223333444445555555
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+++++++.. ..+.+...+..++..+...|++++|++.++++. .|.+...+..++..+...|++++|+..++++++.
T Consensus 379 ~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 379 EMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555544 233334444444455555555555555554432 1223334444444444445555555555555555
Q ss_pred CCCCch
Q 045069 505 DPRKGA 510 (554)
Q Consensus 505 ~p~~~~ 510 (554)
.|+++.
T Consensus 457 ~Pd~~~ 462 (765)
T PRK10049 457 EPQDPG 462 (765)
T ss_pred CCCCHH
Confidence 554443
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=6.4e-18 Score=174.63 Aligned_cols=391 Identities=10% Similarity=0.009 Sum_probs=262.8
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCC
Q 045069 108 ACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCG 184 (554)
Q Consensus 108 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 184 (554)
.-.+......|+.++|.+++....... +.+...+..+..++...|++++|..+|++..+ .+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 334444455555555555555554321 22333455555555555555555555555322 22333444445555555
Q ss_pred ChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHh
Q 045069 185 FWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFN 264 (554)
Q Consensus 185 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 264 (554)
++++|+..+++..+ .. +.+.. +..+..++...|+.++|...++
T Consensus 98 ~~~eA~~~l~~~l~-----------------------------------~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~ 140 (765)
T PRK10049 98 QYDEALVKAKQLVS-----------------------------------GA-PDKAN-LLALAYVYKRAGRHWDELRAMT 140 (765)
T ss_pred CHHHHHHHHHHHHH-----------------------------------hC-CCCHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 55555555555544 32 22233 5566777888899999999988
Q ss_pred hcC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhc-----cCCc---chhHH
Q 045069 265 SLF---HPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADP------VLIASVLAAAAK-----SANV---WPGAV 327 (554)
Q Consensus 265 ~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~l~~~~~~-----~g~~---~~a~~ 327 (554)
++. +.+...+..+..++...|..++|+..++.... .|+. ......+..... .+++ +.|..
T Consensus 141 ~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 141 QALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 872 33555667788888899999999999886653 2332 111222222221 1223 66777
Q ss_pred HHHHHHHh-cCCchHH-HH----HHHHHHHHccCChHHHHHHHhccCCCC--cc--hHHHHHHHHHcCCChHHHHHHHHH
Q 045069 328 IHGYVIQH-GFELSVM-VS----SALVDMYSKCGYLGLGIQVFETMSERN--II--TYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 328 ~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+ .. .-..+...|...|++++|+..|++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 88888754 2222221 11 111334457799999999999988532 12 223356789999999999999999
Q ss_pred HHHcCCCC---CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC------------CC---hhHHHHHHHHHHhcCCh
Q 045069 398 IIEKGLNP---DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ------------AK---TEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 398 m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~---~~~~~~l~~~~~~~g~~ 459 (554)
+.+..... .......+..++...|++++|.++++.+... .+ |+ ...+..++..+...|+.
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~ 375 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL 375 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence 88743111 1245666777889999999999999999873 22 22 23456788889999999
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++|+++++++. .|.+...+..++..+...|++++|++.++++++.+|++...+..++..+...|++++|+.+++++++
T Consensus 376 ~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 376 PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999974 3667888999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCc
Q 045069 538 NGLR 541 (554)
Q Consensus 538 ~~~~ 541 (554)
..+.
T Consensus 456 ~~Pd 459 (765)
T PRK10049 456 REPQ 459 (765)
T ss_pred hCCC
Confidence 6543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=3.9e-18 Score=172.39 Aligned_cols=354 Identities=10% Similarity=0.001 Sum_probs=281.3
Q ss_pred HHhCCChhhHHHHHHHHHHC--CCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChh
Q 045069 180 FAHCGFWDKSLQLFDWMLRL--GKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMN 257 (554)
Q Consensus 180 ~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 257 (554)
+.+..+|+.-.-+|..-.++ .-.-+......++..+.+.|+++.|..+++........+.... ..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l-~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLL-RRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHH-HHHhhhHhhcCCHH
Confidence 34566676665555544332 1122344556677788899999999999999988876654444 44556667799999
Q ss_pred hHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 045069 258 SAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQ 334 (554)
Q Consensus 258 ~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 334 (554)
.|...++++ .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999998 33456778888999999999999999999998752 33456778888899999999999999998877
Q ss_pred hcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC----CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHH
Q 045069 335 HGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER----NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-EST 409 (554)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~ 409 (554)
....+. ..+..+. .+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+. .|+ ...
T Consensus 173 ~~P~~~-~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~ 248 (656)
T PRK15174 173 EVPPRG-DMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAAL 248 (656)
T ss_pred hCCCCH-HHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHH
Confidence 654333 3333333 478899999999999987642 2334455667888999999999999999985 444 557
Q ss_pred HHHHHHHHhcCCchHH----HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 045069 410 FSALLCACCHGGLVND----GREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLS 483 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 483 (554)
+..+...+...|++++ |...|++..+. .+.+...+..+...+.+.|++++|+..+++.. .+.++..+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 8888999999999986 89999999873 44567889999999999999999999999864 3556777888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++...|++++|...++++.+..|+++..+..++.++...|++++|++.++++.+..+.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999999999998887777888999999999999999999887554
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=4.9e-17 Score=157.69 Aligned_cols=451 Identities=11% Similarity=0.001 Sum_probs=287.7
Q ss_pred HHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCC--CCHhHHHHHHHHHHcCCCHhHHHHhhc
Q 045069 86 NDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG--RDSITSSALVTAYSKLSLIDEAIKVFD 163 (554)
Q Consensus 86 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~ 163 (554)
..+..++...-... .-|+...+.|.+.+.-.|+++.+..+...+...... .-...|--+.++|-..|++++|...|.
T Consensus 253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~ 331 (1018)
T KOG2002|consen 253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM 331 (1018)
T ss_pred HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444444443332 224555666666666777777777777766654311 122345556777777777777777776
Q ss_pred ccCC--CCc--chHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCC----ccchhhHHHHHHHHhc
Q 045069 164 GVSD--PDL--VLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPS----LLSVGQGIHGFCLKSS 235 (554)
Q Consensus 164 ~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~ 235 (554)
+..+ +|. ..+--+...+.+.|+.+.+...|+...+. .+-+..|...+-..|+..+ ..+.|..++....+.-
T Consensus 332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence 6554 332 23445667777777777777777777654 1223345544444444443 3344444444444433
Q ss_pred CCCchhHHHHHHHHHHhcCChh------hHHHHHhhc-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC
Q 045069 236 FDSYDYVSSVLVSMYARCNCMN------SAYHVFNSL-FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ---GKKAD 305 (554)
Q Consensus 236 ~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~~~~ 305 (554)
+.|...|-.+...|....-+. .|..++..- ....+...|.+.......|++.+|...|.+.... ...++
T Consensus 411 -~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d 489 (1018)
T KOG2002|consen 411 -PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD 489 (1018)
T ss_pred -cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence 445556666666555543322 233222222 3356667777777777888888888888776543 11222
Q ss_pred H------HHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHH
Q 045069 306 P------VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYN 376 (554)
Q Consensus 306 ~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 376 (554)
. .+-..+....-..++.+.|.+.+..+.+.. +.-+..|-.+..+....+...+|...++.... .++..+.
T Consensus 490 e~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~ars 568 (1018)
T KOG2002|consen 490 EGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARS 568 (1018)
T ss_pred ccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHH
Confidence 2 233344455556677788888888777653 22233344443333344667777777776663 4555666
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc------------CCchHHHHHHHHHhHHHhCCCCCh
Q 045069 377 SVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCH------------GGLVNDGREIFTRMTEEYGIQAKT 443 (554)
Q Consensus 377 ~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~ 443 (554)
.+...+.....+..|.+-|+...+.- ..+|..+...|...|.. .+..++|+++|.+..+ ..|.+.
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~ 646 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNM 646 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchh
Confidence 66667777777777777666555432 23566666566655442 2346778888888877 456677
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCchhHHHHHHHH
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND--PRKGAYKVMLSNTY 519 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~ 519 (554)
..-|-+.-+++..|++.+|..+|.+... .....+|..+..+|...|++..|++.|+...+.. .+++.+...|+.++
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 7888888899999999999999988763 3467889999999999999999999999998883 56788889999999
Q ss_pred HccCChhHHHHHHHHHhhcCCcc
Q 045069 520 AEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+.|++.+|.+.+...++..+..
T Consensus 727 y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhCCcc
Confidence 99999999999998888765543
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=4.9e-17 Score=165.17 Aligned_cols=423 Identities=10% Similarity=-0.036 Sum_probs=259.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYS 150 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 150 (554)
.+......+.+.|++++|+..|++..+ +.|+...|..+..++.+.|++++|...++..++..+ .+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 344556667777777777777777765 355666677777777777777777777777766542 24556666777777
Q ss_pred cCCCHhHHHHhhcccCCC---CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHH
Q 045069 151 KLSLIDEAIKVFDGVSDP---DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGI 227 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 227 (554)
..|++++|+.-|...... +......++..+.. ..+........+.. .++...+..+.. +...........-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 777777777666543221 11111111111111 11222222222211 111111111111 1111011111111
Q ss_pred HHHHHHhcCCCch-hHHHHHHHH---HHhcCChhhHHHHHhhcCC------CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045069 228 HGFCLKSSFDSYD-YVSSVLVSM---YARCNCMNSAYHVFNSLFH------PDLVTWSALITGYSQQGDYGKALYYFRKL 297 (554)
Q Consensus 228 ~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 297 (554)
+....+ ..+.. ..+..+... ....+++++|.+.|+.... .....|+.+...+...|++++|+..+++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111000 00100 000111100 1234667777777776632 23456777777788888888888888887
Q ss_pred HhCCCCCC-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-Ccc
Q 045069 298 NMQGKKAD-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NII 373 (554)
Q Consensus 298 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~ 373 (554)
.+. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+ | +..
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 765 344 4567777777888888888888888887764 44567788888888888999999998888764 3 345
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh------hHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT------EHY 446 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~ 446 (554)
.+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...|++..+. .-..+. ..+
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHH
Confidence 6677788888899999999999988873 454 567888888888899999999999888662 111111 112
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+.....+...|++++|.+++++.. .+.+...+..++..+...|++++|+..|+++.+..+....
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 222333445689999999988853 2445556788888899999999999999999888765443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.84 E-value=1.3e-16 Score=161.70 Aligned_cols=439 Identities=10% Similarity=0.021 Sum_probs=284.6
Q ss_pred HHHHHHhcCCchhHHHHhccCCC--CCcc-hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccH-HHH--HHHhhcC
Q 045069 44 LVRLYALNNVLPSARILFDKTPQ--RSVF-LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTY-ACI--TRACSEN 117 (554)
Q Consensus 44 ll~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l--l~~~~~~ 117 (554)
-+-...+.|+++.|+..|++..+ |+.. .-..++..+...|+.++|+..+++.. .|+...+ ..+ ...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHc
Confidence 34456778888888888887662 3321 22277777778888888888888776 3333322 223 4466677
Q ss_pred CChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHH
Q 045069 118 SDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDW 195 (554)
Q Consensus 118 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~ 195 (554)
|++++|.++++.+.+..+. ++..+..++..+...++.++|++.++++.+ |+...+-.++..+...++..+|++.+++
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 8888888888888877643 456666777778888888888888888776 4433443333333334555558888888
Q ss_pred HHHCCCCCC-hhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhH
Q 045069 196 MLRLGKTPD-EYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTW 274 (554)
Q Consensus 196 m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 274 (554)
+.+. .|+ ...+..++.++.+.|-...|.++...- |+..+-..... =+.+.|.+..+....++
T Consensus 195 ll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~vr~a~~~~---- 257 (822)
T PRK14574 195 AVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQVRMAVLPT---- 257 (822)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHHhhccccc----
Confidence 8775 343 444455555666666555555443321 11110000000 00001111111100000
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHhC-CCCCCHH-----HHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHH
Q 045069 275 SALITGYSQQGD---YGKALYYFRKLNMQ-GKKADPV-----LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSS 345 (554)
Q Consensus 275 ~~l~~~~~~~g~---~~~a~~~~~~m~~~-~~~~~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (554)
-....+ .+.|+.-++.+... +..|... ...-.+-++...|+..++...++.+...+.+....+-.
T Consensus 258 ------~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 258 ------RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred ------ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 001112 34455555554432 1223221 12234456777888888888888888888776677888
Q ss_pred HHHHHHHccCChHHHHHHHhccCCC---------CcchHHHHHHHHHcCCChHHHHHHHHHHHHcC-------------C
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMSER---------NIITYNSVILGLGLHGFTYQAFEFFRDIIEKG-------------L 403 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-------------~ 403 (554)
++.++|...+++++|..+|+.+..+ +......|..+|...+++++|..+++++.+.- .
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 8888888888899998888877531 12224667888888999999999999988731 1
Q ss_pred CCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 045069 404 NPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGA 480 (554)
Q Consensus 404 ~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 480 (554)
.||-. .+..++..+...|++.+|++.++++.. .-|-|......+...+...|...+|++.++... .+.+..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 12222 345566778889999999999999977 467788889999999999999999999997754 3666777788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYK 512 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 512 (554)
.+.++...+++++|..+.+.+.+..|+++..-
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 88888899999999999999999999988554
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.6e-16 Score=152.74 Aligned_cols=476 Identities=13% Similarity=0.071 Sum_probs=322.5
Q ss_pred chhHHHHhccCCC--C-CcchHHHHHHHH--HhcCChHHHHHHHHHhHHcC--CCCCcccHHHHHHHhhcCCChhhHHHH
Q 045069 54 LPSARILFDKTPQ--R-SVFLWNSIIRAY--ALAHRFNDAKSLFKNLLRTQ--LKPDNFTYACITRACSENSDLPGLRFV 126 (554)
Q Consensus 54 ~~~A~~~~~~~~~--~-~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 126 (554)
.+.|...|..+.+ | |+.. .+..++ ...+++..|+.+|+...... .+||+. ..+..++.+.|+.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 4778888777652 2 3322 233443 46689999999999977653 333432 2334556788999999999
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHcC---CCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 045069 127 HGGAIVSGLGRDSITSSALVTAYSKL---SLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG 200 (554)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 200 (554)
|....+.++ .++.++..|...-... ..+..++.++...-. .|++..+.|...|.-.|+++.+..+...+....
T Consensus 222 ~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 222 FERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 988887643 2333333332222222 334455555554432 678888999999999999999999998886643
Q ss_pred CC--CChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHH
Q 045069 201 KT--PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWS 275 (554)
Q Consensus 201 ~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~ 275 (554)
.. .-...|..+.+++-..|++++|...|....+.........+--|..+|.+.|+++.+...|+.+ .+.+..+..
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 11 1234577888899999999999999887777654443445566888999999999999999988 334556677
Q ss_pred HHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHH----HHhcCCchHHHHHHH
Q 045069 276 ALITGYSQQG----DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYV----IQHGFELSVMVSSAL 347 (554)
Q Consensus 276 ~l~~~~~~~g----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l 347 (554)
+|...|...+ ..++|..++.+..+.- ..|...|..+...+. .++...++..+..+ ...+-.+.+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 7777777664 4566777776665542 334445555544444 44444446666544 455666888899999
Q ss_pred HHHHHccCChHHHHHHHhccCC-------CCcc------hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 045069 348 VDMYSKCGYLGLGIQVFETMSE-------RNII------TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSAL 413 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l 413 (554)
...+...|++++|...|..... ++.. +--.+...+-..++++.|.+.|..+.+ ..|.-. .|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHh
Confidence 9999999999999998887652 2221 222345556667788889899988888 456655 45555
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC----CCCCChhhHHHHHHHHHh--
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL----PKPVDPAVSGALLSCCHI-- 487 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~-- 487 (554)
+......+...+|...++.... ....++..+..+...+.+...+..|.+-|..+ ...+|+.+...|+..|..
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 4333345677788888888877 45566667777777777777777777744443 334566666666665542
Q ss_pred ----------cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 488 ----------YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 488 ----------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.+..++|++.|.++++.+|.+..+-..++-+++..|++.+|+.+|.+..+...
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 24567788888888888888888888888888888888888888888877654
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=1.4e-15 Score=134.29 Aligned_cols=412 Identities=11% Similarity=0.053 Sum_probs=228.5
Q ss_pred hhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCC--chh-HHHHhccCC-----------------------C
Q 045069 13 SKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNV--LPS-ARILFDKTP-----------------------Q 66 (554)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--~~~-A~~~~~~~~-----------------------~ 66 (554)
+-+.+.+.++.-+++.|++.|++.++..-..|++.-+-.++ +.- -++.|-.|. +
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 34567788889999999999999999888888876554432 221 122332332 1
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHH
Q 045069 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALV 146 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 146 (554)
.+..+|..+|.++++--..+.|.+++++......+.+..+||.+|.+-+-. ..++++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 233455555555555555555555555555554555555555555443221 1145555555555555555555555
Q ss_pred HHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccch-hh
Q 045069 147 TAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSV-GQ 225 (554)
Q Consensus 147 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~ 225 (554)
.+.++.|+++.|.+ .|++++.+|++.|+.|...+|..+|...++.++..+ +.
T Consensus 281 ~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 281 SCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 55555555544433 345566677777777777777777776666666544 22
Q ss_pred HHHHHHHH----hcC----CCchhHHHHHHHHHHhcCChhhHHHHHhhc--------CCCC---hhhHHHHHHHHHhcCC
Q 045069 226 GIHGFCLK----SSF----DSYDYVSSVLVSMYARCNCMNSAYHVFNSL--------FHPD---LVTWSALITGYSQQGD 286 (554)
Q Consensus 226 ~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~---~~~~~~l~~~~~~~g~ 286 (554)
.++..+.. ..+ +.|...+..-+..|.+..+.+-|.++-.-+ ..++ ..-|..+....++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 23333222 111 123344455555666666666666654433 1122 2335567777788888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhc
Q 045069 287 YGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366 (554)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (554)
.+.-...|+.|.-.-.-|+..+...++++....|.++-..+++..++..|.......-.-+...+++..-
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~---------- 483 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL---------- 483 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC----------
Confidence 8888899999988888888888889999888889998888888888887754444443333333333220
Q ss_pred cCCCCcchHHHHHHHHHc--CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChh
Q 045069 367 MSERNIITYNSVILGLGL--HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTE 444 (554)
Q Consensus 367 ~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 444 (554)
.|+...-..+-...++ ..-.+.....-.+|.+..+.| ...+.++..+.+.|+.++|.+++..+.++..--|-..
T Consensus 484 --hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 484 --HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred --CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 1111100001011100 000111122223344433332 3344444455666777777776666644322223333
Q ss_pred HHH---HHHHHHHhcCChHHHHHHHHhC
Q 045069 445 HYI---YMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 445 ~~~---~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
..+ -+++.-.+..+...|...++-+
T Consensus 560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 560 LLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333 3444445556666666666555
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.3e-15 Score=154.45 Aligned_cols=436 Identities=12% Similarity=0.010 Sum_probs=288.5
Q ss_pred HHHhcCChHHHHHHHHHhHHcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHh
Q 045069 78 AYALAHRFNDAKSLFKNLLRTQLKPDNF-TYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLID 156 (554)
Q Consensus 78 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 156 (554)
...+.|++..|++.|++..+. .|+.. ....++..+...|+.++|...++..... -+........+...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence 345888888888888888775 34432 2227777777778888888888887711 1122233333355777788888
Q ss_pred HHHHhhcccCC--C-CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHH
Q 045069 157 EAIKVFDGVSD--P-DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLK 233 (554)
Q Consensus 157 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 233 (554)
+|+++|+++.+ | +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++.+.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888765 3 3455666677778888888888888887664 45545553333333334444446666666666
Q ss_pred hcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 045069 234 SSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHP-DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASV 312 (554)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (554)
.. +.+...+..++..+.+.|-...|.++...-+.- +...+..+ +.+.|.+..+.. ..++..
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a----~~~~~~----- 259 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMA----VLPTRS----- 259 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhc----cccccc-----
Confidence 54 334455555555666666666665555443210 00000000 111121221111 001000
Q ss_pred HHHHhccCC---cchhHHHHHHHHHh-cCCch-HH----HHHHHHHHHHccCChHHHHHHHhccCCCC--c--chHHHHH
Q 045069 313 LAAAAKSAN---VWPGAVIHGYVIQH-GFELS-VM----VSSALVDMYSKCGYLGLGIQVFETMSERN--I--ITYNSVI 379 (554)
Q Consensus 313 ~~~~~~~g~---~~~a~~~~~~~~~~-~~~~~-~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~--~~~~~l~ 379 (554)
...+ .+.|+.-++.+... +..|. .. ..--.+-++...|++.++++.|+.+..+. + .+-..+.
T Consensus 260 -----~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 260 -----ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred -----chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0111 23344444444432 11122 11 22234557778899999999999998432 2 3456788
Q ss_pred HHHHcCCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC----------CCCC--
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKG-----LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG----------IQAK-- 442 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~-- 442 (554)
.+|...+++++|..+++.+.... ..++......|.-++...+++++|..+++++.+... -.|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997643 122333467888999999999999999999987311 0122
Q ss_pred -hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 443 -TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 443 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
...+..++..+...|++.+|++.++++. .|.+......+...+...|.+.+|++.++.+....|++.......+.++
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 3345667888899999999999999975 3778999999999999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHhhcCCc
Q 045069 520 AEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
...|+|++|..+.+.+.+..+.
T Consensus 495 l~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCCC
Confidence 9999999999999888765543
No 28
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=5.9e-15 Score=142.49 Aligned_cols=528 Identities=13% Similarity=0.066 Sum_probs=356.1
Q ss_pred HHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhcc---CCCCCcchHHHHHHHHHhcCCh
Q 045069 9 VLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDK---TPQRSVFLWNSIIRAYALAHRF 85 (554)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~ll~~~~~~~~~ 85 (554)
.+..+...|+++.|.++...+++.. +.++..|.+|..+|-.+|+.+++...+-. +.+.|...|-.+-....+.|++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 3455666699999999999999875 67888999999999999999999887643 3456778899999999999999
Q ss_pred HHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHH----HHHHHcCCCHhHHHHh
Q 045069 86 NDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSAL----VTAYSKLSLIDEAIKV 161 (554)
Q Consensus 86 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~ 161 (554)
+.|.-.|.+..+.. +++...+--=...|-+.|+...|..-+.++....++.|..-...+ +..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999873 334444445567788999999999999999988654444444444 4456667777889888
Q ss_pred hcccCC-----CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC----------------------ChhhHH----H
Q 045069 162 FDGVSD-----PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTP----------------------DEYTLV----G 210 (554)
Q Consensus 162 ~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p----------------------~~~~~~----~ 210 (554)
++.... .+...++.++..+.+...++.+......+......+ +...|. .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 877654 455678899999999999999999988887622112 211221 2
Q ss_pred HHHHcccCCccchhhHHHHHHHHhc--CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC----CChhhHHHHHHHHHhc
Q 045069 211 LISGLWEPSLLSVGQGIHGFCLKSS--FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH----PDLVTWSALITGYSQQ 284 (554)
Q Consensus 211 ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~ 284 (554)
+.-++......+....+........ +..+...+.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2334556666677777777777777 444667888899999999999999999988832 4567889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhccCCcchhHHHHHHHH--------HhcCCchHHHHHHHHHHHHccC
Q 045069 285 GDYGKALYYFRKLNMQGKKAD-PVLIASVLAAAAKSANVWPGAVIHGYVI--------QHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g 355 (554)
|.++.|.+.|+..... .|+ ...-.++-+.+...|+.++|.+.+..+. ..+..|...........+...|
T Consensus 463 ~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred hhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 9999999999988765 343 3344556667788899999999888843 3345566655555666677777
Q ss_pred ChHHHHHHHhccCC------------------------------------------------------C-----------
Q 045069 356 YLGLGIQVFETMSE------------------------------------------------------R----------- 370 (554)
Q Consensus 356 ~~~~A~~~~~~~~~------------------------------------------------------~----------- 370 (554)
+.++=..+-..|.. +
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 66553322222110 0
Q ss_pred Cc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCC--CCCHH--H-HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC
Q 045069 371 NI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGL--NPDES--T-FSALLCACCHGGLVNDGREIFTRMTEEYGIQA 441 (554)
Q Consensus 371 ~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~--~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 441 (554)
+. ..+.-++.++++.+++++|+.+...+.+... .++.. . -...+.+++..+++..|...++.+...++...
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 00 0134566778888999999998888876431 22221 1 23445566788899999888888877533332
Q ss_pred C---hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHH--HHHHHHhcCChHHHHHHHHHHHhcCCCC-------
Q 045069 442 K---TEHYIYMVKLLGLAGNLEEAYSFIWSL-PKPVDPAVSGA--LLSCCHIYGNSDLAEIVAHQLFENDPRK------- 508 (554)
Q Consensus 442 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~p~~------- 508 (554)
+ ...|+.....+.+.|+-.--.+++..+ ..+++...... ...-....+.+.-|++.|-++...+|++
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 2 334443333333333333223333221 11111111111 1111223344444444444444444444
Q ss_pred ---------------------------------------chhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 509 ---------------------------------------GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 509 ---------------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
-.+.+.++.+|...|-..-|..+|+++++..+
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 34667888888899999999999998887643
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.78 E-value=1.2e-13 Score=128.78 Aligned_cols=488 Identities=9% Similarity=0.001 Sum_probs=383.1
Q ss_pred HHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHH
Q 045069 48 YALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLR 124 (554)
Q Consensus 48 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 124 (554)
.....+.++|+.++.+.. +.+...|. +|++..-++.|..++++..+. ++-+...|.+....=-..|+.+...
T Consensus 386 AVelE~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence 334556666777776654 22334443 566677788999999998886 7778888888777777888888888
Q ss_pred HHHHHHH----HhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC------CCcchHHHHHHHHHhCCChhhHHHHHH
Q 045069 125 FVHGGAI----VSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD------PDLVLCNSMISGFAHCGFWDKSLQLFD 194 (554)
Q Consensus 125 ~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~ 194 (554)
++++.-. ..|+..+..-|..=...|-+.|..-.+..+...... .-..+|+.-...|.+.+.++-|..+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 8776543 457888888887777777777777777766665543 234578888889999999999999998
Q ss_pred HHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcC---CCCh
Q 045069 195 WMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLF---HPDL 271 (554)
Q Consensus 195 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~ 271 (554)
...+. .+-+...|......--..|..+.-..+++.++..-. -....|......+-..|++..|..++.... +.+.
T Consensus 541 ~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse 618 (913)
T KOG0495|consen 541 HALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE 618 (913)
T ss_pred HHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence 88764 233445565555555566777777788887776643 345667777778888999999999998873 3466
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHH
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMY 351 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (554)
..|-+-+..-..+.++++|..+|.+... ..|+...|..-+..---.++.++|.+++++.++.- +.-...|-.+.+.+
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHH
Confidence 7888889999999999999999998875 46777777776776677889999999999888763 45567888899999
Q ss_pred HccCChHHHHHHHhccCC--CCc-chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 045069 352 SKCGYLGLGIQVFETMSE--RNI-ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 428 (554)
...++++.|...|..-.+ |+. ..|-.|...--+.|+...|..++++..-++ +-+...|...|+.-.+.|+.+.|..
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 999999999999987765 554 467777777778889999999999988753 3355688999999999999999999
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 429 IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
+..+..+ .++.+...|..-|....+.++-......+++.. .|+..+..+...+....+++.|.+.|.++++.+|++
T Consensus 775 lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 775 LMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 9999988 478888888888888888888777777666553 577778888888899999999999999999999999
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCeeeeecC
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVSGS 552 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~ 552 (554)
..++..+-..+.+.|.-++-.+++.++... .|.-|-.|..++
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 999999999999999999999999998765 455677776554
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.6e-15 Score=135.04 Aligned_cols=439 Identities=12% Similarity=0.080 Sum_probs=290.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHH-HHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHH----HHHHHHH
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYAC-ITRACSENSDLPGLRFVHGGAIVSGLGRDSITS----SALVTAY 149 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~ 149 (554)
|.+-|..+....+|+..|+-+.+...-||.-.... +.+.+.+.+.+.+|.++++..+..-+..+..+. +.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 45566777888999999999999888888765443 556678889999999999988877555454444 3334457
Q ss_pred HcCCCHhHHHHhhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHH
Q 045069 150 SKLSLIDEAIKVFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGI 227 (554)
Q Consensus 150 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 227 (554)
.+.|+++.|+..|+...+ |+..+-..|+-++..-|+-++..+.|.+|......||..-|.. ...+.+.. +
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------~~ddp~~~--l 358 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------EKDDPDDN--L 358 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC------CcCCcchH--H
Confidence 889999999999998765 7776655566666678999999999999987665665544310 01111100 0
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhcC--ChhhH----HHHHhhcCCCChhh-------------HH--------HHHHH
Q 045069 228 HGFCLKSSFDSYDYVSSVLVSMYARCN--CMNSA----YHVFNSLFHPDLVT-------------WS--------ALITG 280 (554)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a----~~~~~~~~~~~~~~-------------~~--------~l~~~ 280 (554)
+.+.++ +..+.-..+.+ +.+++ .++..-++.|+-.. +. .-...
T Consensus 359 l~eai~----------nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~ 428 (840)
T KOG2003|consen 359 LNEAIK----------NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGE 428 (840)
T ss_pred HHHHHh----------hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence 000000 00000011100 01111 11111111111000 00 01123
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------------------------HHH-----HHHHHhccCCcch
Q 045069 281 YSQQGDYGKALYYFRKLNMQGKKADPVL-------------------------------IAS-----VLAAAAKSANVWP 324 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------------------------------~~~-----l~~~~~~~g~~~~ 324 (554)
+.++|+++.|+++++-..+..-+.-+.. |+. --......|++++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 5666677777666665544332221111 111 0111123577888
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC---CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 045069 325 GAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS---ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK 401 (554)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 401 (554)
|.+.+++....+-......|| +.-.+...|++++|++.|-.+. ..+......+...|-...+..+|++++-+....
T Consensus 509 a~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 888888888776444444454 3334677888999988887654 366667777788888888899999988777663
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHH
Q 045069 402 GLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVDPAVSGA 480 (554)
Q Consensus 402 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 480 (554)
++.|+.....|...|-+.|+-.+|.+.+-+--. -++.+..+...|...|....-+++|+.+|++.. ..|+..-|..
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwql 664 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQL 664 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 444566888899999999999999888766654 467788888889989999999999999998864 5889999988
Q ss_pred HHHHH-HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 481 LLSCC-HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 481 l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++..| .+.|++++|...|++..+..|.+......|+.++...|. .++.++-+++.
T Consensus 665 miasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl-~d~key~~kle 720 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL-KDAKEYADKLE 720 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc-hhHHHHHHHHH
Confidence 77665 567999999999999999999999999999988888874 34455544443
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=1.1e-14 Score=129.76 Aligned_cols=453 Identities=13% Similarity=0.042 Sum_probs=285.2
Q ss_pred hHHHHHHHHHHhcCCchhHHHHhccCCC----CCc-chHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCccc----HHH
Q 045069 39 FYATKLVRLYALNNVLPSARILFDKTPQ----RSV-FLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFT----YAC 109 (554)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ 109 (554)
.....|.+-|.-.....+|+..++-+.+ |+. ..--.+...+.+...+.+|+..|+..+..-+..+..+ .+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 3344555666666778888888876653 222 2222345677888999999999998887633333333 334
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC----------------CCcchH
Q 045069 110 ITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD----------------PDLVLC 173 (554)
Q Consensus 110 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~ 173 (554)
+...+.+.|.++.|..-|+...+. .|+-.+--.|+-++..-|+.++..+.|..|.. |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 444578999999999999998876 46766655566666777899999998887753 222222
Q ss_pred HHHH-----HHHHhCC--ChhhHHHHHHHHHHCCCCCChhh-HHHH--------------------HHHcccCCccchhh
Q 045069 174 NSMI-----SGFAHCG--FWDKSLQLFDWMLRLGKTPDEYT-LVGL--------------------ISGLWEPSLLSVGQ 225 (554)
Q Consensus 174 ~~li-----~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~-~~~l--------------------l~~~~~~~~~~~a~ 225 (554)
|..| .-+-+.+ +-++++-.-.++..--+.||-.. +..- ...+.+.|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2222 1111111 11222222222222222232110 0000 01223455566666
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHh--cCChhhHHHHHhhcCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045069 226 GIHGFCLKSSFDSYDYVSSVLVSMYAR--CNCMNSAYHVFNSLFHPDL---VTWSALITGYSQQGDYGKALYYFRKLNMQ 300 (554)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 300 (554)
+++.-..+..-......-+.|...+.- ..++..|...-+.....|. .....-...-..+|++++|.+.|++....
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 665555544433333333333322222 2234444333333222111 11111112234578999999999998765
Q ss_pred CCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHH
Q 045069 301 GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNS 377 (554)
Q Consensus 301 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 377 (554)
.-.-....|+.= -.+-..|++++|+..|-.+...- .-+..+...+...|....+...|++++-+... .|+.....
T Consensus 520 dasc~ealfnig-lt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilsk 597 (840)
T KOG2003|consen 520 DASCTEALFNIG-LTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSK 597 (840)
T ss_pred chHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH
Confidence 433333333332 24567899999999887654321 33567777888999999999999999987664 56678888
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH-Hhc
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL-GLA 456 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 456 (554)
|...|-+.|+-.+|.+++-+-... ++-+..|...|...|....-+++++.+|++.. -+.|+..-|..++..| .+.
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhc
Confidence 999999999999999987765553 55577788889988999999999999999874 5899999998887765 568
Q ss_pred CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 045069 457 GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500 (554)
Q Consensus 457 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 500 (554)
|++.+|.++++... .+.+...+..|++.+...|-. ++.++.++
T Consensus 674 gnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~k 718 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYADK 718 (840)
T ss_pred ccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHHH
Confidence 99999999999874 477888888898888777643 34444333
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=4.1e-14 Score=125.24 Aligned_cols=428 Identities=13% Similarity=0.129 Sum_probs=233.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhh--cCCChhhH-HHHHHHHHHhcCCCCHhHHHH
Q 045069 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACS--ENSDLPGL-RFVHGGAIVSGLGRDSITSSA 144 (554)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ 144 (554)
.+.+=|.++.. ...|..+++.-+|+.|.+.|+..+...--.|+...+ ...++--+ .+.|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 34566666664 467889999999999999988777766655555432 22333322 2334444444422 22232
Q ss_pred HHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchh
Q 045069 145 LVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVG 224 (554)
Q Consensus 145 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 224 (554)
+.|.+.+ ++-+.......+|.+||.++++--..++|.+++++-.....+.+..+||.+|.+..- ...
T Consensus 191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 3455444 444444456779999999999999999999999999888889999999999976543 333
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHh----hc----CCCChhhHHHHHHHHHhcCCHHH-HHHHHH
Q 045069 225 QGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFN----SL----FHPDLVTWSALITGYSQQGDYGK-ALYYFR 295 (554)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~----~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~ 295 (554)
+++..+|....+.||..++|+++.+..+.|+++.|.+-+- +| ++|...+|..+|..+++.++..+ +..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 7888888888888888888888888877777766544322 22 34555555555555555554433 222333
Q ss_pred HHHhC--C--C---CC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHhc----CCch---HHHHHHHHHHHHccCChHHH
Q 045069 296 KLNMQ--G--K---KA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQHG----FELS---VMVSSALVDMYSKCGYLGLG 360 (554)
Q Consensus 296 ~m~~~--~--~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A 360 (554)
++... | . .| |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|.....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32211 1 1 11 22334444555555555544444443332110 1111 12233334444444444444
Q ss_pred HHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC
Q 045069 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ 440 (554)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 440 (554)
...| +.|+-.-+-|+..+-..++++..-.+.++-.-+++..++. +|..
T Consensus 418 ~~~Y-------------------------------~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght 465 (625)
T KOG4422|consen 418 LKWY-------------------------------EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHT 465 (625)
T ss_pred HHHH-------------------------------HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhh
Confidence 4444 4444443444444444444444444444444444444444 2332
Q ss_pred CChhHHHHHHHHHHhcC--------------------ChHHHHH-HHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHH
Q 045069 441 AKTEHYIYMVKLLGLAG--------------------NLEEAYS-FIWSLP-KPVDPAVSGALLSCCHIYGNSDLAEIVA 498 (554)
Q Consensus 441 ~~~~~~~~l~~~~~~~g--------------------~~~~A~~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 498 (554)
-.......+...+++.. ++.++.+ .-.++. ....+...+..+..+.+.|..++|-+++
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHH
Confidence 22222222222222221 1111111 111111 2334555556666667777777777777
Q ss_pred HHHHhc---CCCCchhH--HHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 499 HQLFEN---DPRKGAYK--VMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 499 ~~~~~~---~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
.-..+. -|..+... ..+.+.-.+..+..+|..+++-+...+...-.
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E 596 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICE 596 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhh
Confidence 777554 24444333 33445555667777777777777666554433
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.72 E-value=3e-13 Score=130.92 Aligned_cols=324 Identities=10% Similarity=0.027 Sum_probs=241.8
Q ss_pred HHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCCh
Q 045069 44 LVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL 120 (554)
Q Consensus 44 ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 120 (554)
....+.-+|+.++|.+++.++. +.+...|..|...|-+.|+.+++...+-..-... +-|...|..+.....+.|.+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 3344445599999999999987 3466889999999999999999988776655442 33557899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCc----c----hHHHHHHHHHhCCChhhHHHH
Q 045069 121 PGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDL----V----LCNSMISGFAHCGFWDKSLQL 192 (554)
Q Consensus 121 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~ 192 (554)
.+|.-.+...++..+ ++...+---+..|-+.|+...|..-|.++.+.++ . .-..++..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999874 3555555667889999999999999988876222 1 223346677778888999998
Q ss_pred HHHHHHC-CCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhc---------------------------CCCchhHHH
Q 045069 193 FDWMLRL-GKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSS---------------------------FDSYDYVSS 244 (554)
Q Consensus 193 ~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~ 244 (554)
++..... +-..+...++++...+.+...++.+........... ..++..+.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~- 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI- 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-
Confidence 8887662 234455667777777777788887777766655411 22222331
Q ss_pred HHHHHHHhcCChhhHHHHHhhc------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 045069 245 VLVSMYARCNCMNSAYHVFNSL------FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 318 (554)
-++-++......+....+.... +..+...|.-+..+|.+.|++.+|+.+|..+.....--+...|..+..++..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 1222333333333333333222 2345667888999999999999999999999887666677889999999999
Q ss_pred cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCC
Q 045069 319 SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERN 371 (554)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 371 (554)
.|..+.|.+.++..+... +.+...--.|...+.+.|+.++|.+.++.+..||
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999998765 4556666778888999999999999999988666
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=8.2e-12 Score=116.76 Aligned_cols=510 Identities=14% Similarity=0.077 Sum_probs=364.4
Q ss_pred chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchH------------HHHHHH----
Q 045069 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLW------------NSIIRA---- 78 (554)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~------------~~ll~~---- 78 (554)
++..++.+...+++.+ +.+|..|.+-.+.--..|++..|..+..+-. +.+...| .+++.-
T Consensus 266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~ 344 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRF 344 (913)
T ss_pred HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 3444566666666654 3455556555566666777777777765422 1121222 111111
Q ss_pred -------HHhcCC----hHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHH
Q 045069 79 -------YALAHR----FNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVT 147 (554)
Q Consensus 79 -------~~~~~~----~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 147 (554)
+++.-+ ...=..++++.++. ++-++..|... ....+.+.|.-++....+-- +.+.. |.-
T Consensus 345 ~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~d----Lwl 414 (913)
T KOG0495|consen 345 LPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMD----LWL 414 (913)
T ss_pred CCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHH----HHH
Confidence 111111 12223344444443 33333334333 23345555666666665542 22333 344
Q ss_pred HHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHH----HHHCCCCCChhhHHHHHHHcccCCc
Q 045069 148 AYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDW----MLRLGKTPDEYTLVGLISGLWEPSL 220 (554)
Q Consensus 148 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~ 220 (554)
+|++..-++.|.++++...+ .+...|.+-...=-.+|+.+...+++++ +...|+..+...|..=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 55666777888888877655 4666676666666678888888887765 4557888888888888888888899
Q ss_pred cchhhHHHHHHHHhcCCCc--hhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045069 221 LSVGQGIHGFCLKSSFDSY--DYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFR 295 (554)
Q Consensus 221 ~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 295 (554)
.-.+..+...++..|+... ..+|..-...|.+.+.++-|..+|... ...+...|......--..|..+....+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 9999999998888887643 357777788889999999999988876 33566778877777777899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC--CCCcc
Q 045069 296 KLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS--ERNII 373 (554)
Q Consensus 296 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~ 373 (554)
+....- +-....+.......-..|++..|..++....+.. +-+...|-.-+..-....+++.|..+|.+.. .++..
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 988762 2333445555556667799999999999998886 3478889899999999999999999999877 37777
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
.|.--+...--.+..++|++++++.++ ..|+.+ .|..+.+.+.+.++.+.|...|..-.+ .++..+..|..+.+.
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKL 728 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHH
Confidence 777777777778899999999999988 577766 688888888999999999999988766 466678888888888
Q ss_pred HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---------------------
Q 045069 453 LGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG--------------------- 509 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~--------------------- 509 (554)
-.+.|..-.|..++++.. .|.+...|...+..-.+.|+.+.|.....++++.-|.+.
T Consensus 729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH
Confidence 889999999999998854 577888999999999999999999998888877766554
Q ss_pred ---------hhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 510 ---------AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 510 ---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
.+...++..+....++++|++.|.+.++.+...-.
T Consensus 809 ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 809 ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 34455666677777888888888888777654433
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=7.1e-17 Score=147.33 Aligned_cols=257 Identities=17% Similarity=0.088 Sum_probs=114.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA-SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
+...+.+.|++++|++++++......+|+...|. .+...+...++.+.|...++.+.+.+. -++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccc
Confidence 3555666777777777775544333233333333 333344556677777777777766552 255566667766 6788
Q ss_pred ChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 356 YLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCHGGLVNDGREIFTR 432 (554)
Q Consensus 356 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 432 (554)
++++|.++++..-+ ++...+..++..+.+.++++++..+++++.... ..++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888876542 556667778888889999999999999987633 345666788888899999999999999999
Q ss_pred hHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 433 MTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
..+. .|.+......++..+...|+.+++.++++.... +.++..+..+..++...|+.++|...++++.+.+|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9884 444578888999999999999998888877542 567778899999999999999999999999999999999
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
....++.++...|+.++|.++.+++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988764
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=5.2e-14 Score=131.91 Aligned_cols=279 Identities=14% Similarity=0.044 Sum_probs=228.9
Q ss_pred ChhhHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCcchhHHH-
Q 045069 255 CMNSAYHVFNSLFH---PDLVTWSALITGYSQQGDYGKALYYFRKLNMQG--KKADPVLIASVLAAAAKSANVWPGAVI- 328 (554)
Q Consensus 255 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~- 328 (554)
+..+|...|+.++. ....+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 56788888888633 334566778899999999999999999998653 223556788887765432 22222
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC---CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 045069 329 HGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER---NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP 405 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 405 (554)
-+.+.+.. +-++.+|-++.++|.-+++.+.|++.|++..+. ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 33344443 667899999999999999999999999998863 456888888889999999999999999876 556
Q ss_pred CHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHH
Q 045069 406 DES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGAL 481 (554)
Q Consensus 406 ~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 481 (554)
... +|..+...|.+.++++.|+-.|++..+ +.| +......+...+.+.|+.++|+++++++. .+.++-.-..-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 554 777888899999999999999999976 455 56777888899999999999999999974 36677777777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccC
Q 045069 482 LSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 543 (554)
+..+...+++++|++.++++.+.-|++..++..++.+|.+.|+.+.|+.-|.-+.+..++..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 78888999999999999999999999999999999999999999999999998887766543
No 37
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.64 E-value=2.5e-12 Score=124.22 Aligned_cols=485 Identities=14% Similarity=0.053 Sum_probs=244.8
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 045069 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ----RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRT 98 (554)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 98 (554)
..++..+...|+.|+-.+|..+|.-|+..|+++.|- +|..|.- -+-..++.++.+..++++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 357778888999999999999999999999999998 7776651 13344555666555555555543
Q ss_pred CCCCCcccHHHHHHHhhcCCChhh---HHHHHHHHHH----hcC-----------------CCCHhHHHHHHHHHHcCCC
Q 045069 99 QLKPDNFTYACITRACSENSDLPG---LRFVHGGAIV----SGL-----------------GRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 99 ~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~----~~~-----------------~~~~~~~~~li~~~~~~g~ 154 (554)
.|...||..|+.+|.+.||+.. .++.+..+.. .|+ -||.. ..+......|.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 4555666666666666665433 2221111111 111 11111 11122222333
Q ss_pred HhHHHHhhcccC---------------------------------C-CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCC
Q 045069 155 IDEAIKVFDGVS---------------------------------D-PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG 200 (554)
Q Consensus 155 ~~~A~~~~~~~~---------------------------------~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 200 (554)
++.+++++..++ + +++.+|..++.+-..+|+.+.|..++.+|++.|
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 344443332222 2 666677777777777777777777777777777
Q ss_pred CCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHH
Q 045069 201 KTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITG 280 (554)
Q Consensus 201 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 280 (554)
++.+..-|..++-+ .++...+..++..|...|+.|+..++...+..+.++|....+......-.--+...+..+..+
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 77777766666655 666666777777777777777777777666666554442222211110000111122222222
Q ss_pred HHhcCCHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhc---CCchHHHHHHHHHHHH
Q 045069 281 YSQQGDYGK-----ALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG---FELSVMVSSALVDMYS 352 (554)
Q Consensus 281 ~~~~g~~~~-----a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~ 352 (554)
.....+.+. ....+++..-.|+......|. +..-...+|.-+.++++-..+..-. ...++..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 111111111 111111111123333332222 2222233555555555555543211 1122333333333333
Q ss_pred ccCChHHHHHHHhccCCCCcchHHHHHHHHHc---CCChHHHHHHHHHH------------HH----cCCCC-------C
Q 045069 353 KCGYLGLGIQVFETMSERNIITYNSVILGLGL---HGFTYQAFEFFRDI------------IE----KGLNP-------D 406 (554)
Q Consensus 353 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m------------~~----~g~~p-------~ 406 (554)
+ +...+......-.-.+... .....+..++.... .. ....| -
T Consensus 391 r------------r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 391 R------------RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred H------------HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 2 2221111100000011111 01111111111110 00 00111 0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCChhhHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGAL 481 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l 481 (554)
...-+.++..|+..-+..+++..-+..... -++ ..|..|++.+....+.+.|..+.++... ..+..-+..+
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l 534 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSL 534 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHH
Confidence 011234444555555555555444444332 222 5677888888888888888888777652 2344455666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc---CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 482 LSCCHIYGNSDLAEIVAHQLFEN---DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.....+.+....+..+++++.+. .|........+.......|+.+.-.++.+-+...|+.-
T Consensus 535 ~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 535 QDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 66777777777787777777765 23334455555556667777777777777776666654
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.4e-12 Score=115.28 Aligned_cols=420 Identities=13% Similarity=0.081 Sum_probs=235.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCC-cccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCC-HhHHHHHHHHH
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPD-NFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD-SITSSALVTAY 149 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~ 149 (554)
+-...+-|.++|++++|++.|.+..+ ..|| +..|.....+|...|+|+++.+--...++. .|+ +..+..-.+++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 34455667889999999999999998 4677 677888888899999999988777666654 343 23455556677
Q ss_pred HcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHH---------HHH--CCCCCChhhHHHHHHHcccC
Q 045069 150 SKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDW---------MLR--LGKTPDEYTLVGLISGLWEP 218 (554)
Q Consensus 150 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~---------m~~--~~~~p~~~~~~~ll~~~~~~ 218 (554)
-..|++++|+.= .+-.++...+....-.--+.+++++ |.+ ..+.|......+-...+...
T Consensus 194 E~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 777888877642 1222222222222222222222222 121 12345544444444333211
Q ss_pred CccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhc-CChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045069 219 SLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARC-NCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKL 297 (554)
Q Consensus 219 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 297 (554)
-... +...+...|...-..+-..+... ..+..|.+.+.+-. +........ +..+.-. +.|
T Consensus 265 ~~~~--------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~------~~~~~~~~~--n~~d~~l---e~~ 325 (606)
T KOG0547|consen 265 PKPL--------FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEEC------LGSESSLSV--NEIDAEL---EYM 325 (606)
T ss_pred cccc--------ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHh------hhhhhhccc--cccchhH---HHH
Confidence 0000 00000000100001111111110 11222222222110 000000000 0000000 000
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcch
Q 045069 298 NMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIIT 374 (554)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 374 (554)
.. +....-.-+.-.|+.-.+..-|+..+.....++ ..|--+..+|....+.++....|+...+ .|..+
T Consensus 326 A~--------al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv 396 (606)
T KOG0547|consen 326 AE--------ALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV 396 (606)
T ss_pred HH--------HHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch
Confidence 00 000000011223444444444444444332211 1133444456666666666666665543 34455
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
|..-...+.-.+++++|..=|++.++ +.|+.. .|..+--+..+.+.++++...|++.+++ +|..+..|+....++
T Consensus 397 YyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 397 YYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEIL 472 (606)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHH
Confidence 65555666666778888888888877 566543 6666666677888999999999999884 777888899999999
Q ss_pred HhcCChHHHHHHHHhCCC-CC-------Chh--hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 454 GLAGNLEEAYSFIWSLPK-PV-------DPA--VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~-~~-------~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
...++++.|.+.|+.... .| ++. ....++. +.-.+++..|+.+++++.+.+|.....+..|+....+.|
T Consensus 473 tDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 473 TDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred hhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 999999999999887531 11 122 2222222 224489999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhh
Q 045069 524 RWDDVMKLRDDIVD 537 (554)
Q Consensus 524 ~~~~A~~~~~~~~~ 537 (554)
+.++|+++|++...
T Consensus 552 ~i~eAielFEksa~ 565 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998653
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5e-12 Score=113.47 Aligned_cols=254 Identities=14% Similarity=0.086 Sum_probs=207.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHcc
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF--ELSVMVSSALVDMYSKC 354 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 354 (554)
+..++....+.+++..-.......|..-+...-+....+.-...++++|+.+|+++.++.. -.|..+|..++ |.+.
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence 3445666667888888888888888766666666666677788899999999999988753 13567777766 4443
Q ss_pred CChH---HHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHH
Q 045069 355 GYLG---LGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 355 g~~~---~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~ 430 (554)
.+-. -|..++ .+.+-.+.|..++..-|.-.++.++|...|++.++ +.|... .|+.+.+-|....+...|.+-+
T Consensus 311 ~~skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 3222 122222 23345567778888888999999999999999999 667655 7888889999999999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
+...+ -.|-|-..|-.+.++|.-.+...-|+-+|++.. .|.|+..|.+|+.+|.+.++.++|+..|+++....-.+
T Consensus 388 RrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 388 RRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 99988 356688999999999999999999999999975 47899999999999999999999999999999998888
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
..++..|+++|.+.++.++|..++++.++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 89999999999999999999999999876
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=2.9e-11 Score=108.92 Aligned_cols=446 Identities=10% Similarity=-0.008 Sum_probs=231.7
Q ss_pred hcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHH
Q 045069 81 LAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIK 160 (554)
Q Consensus 81 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 160 (554)
.++++..|.++|+..+... .-+...|..-+..=.+...+..|..+++..+..=+..|.. |-..+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHH
Confidence 3445555666666655543 2244444444555555556666666666655543222222 2222333334466666666
Q ss_pred hhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHh-c-C
Q 045069 161 VFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKS-S-F 236 (554)
Q Consensus 161 ~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~ 236 (554)
+|++..+ |+..+|++.|..=.+.+.++.|..+|++.+- +.|+..+|..-.+-=-+.|+...+..+++.+++. | -
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 6665543 6666666666666666666666666666554 3466666555555555556666666666555443 1 1
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhc----CCC-ChhhHHHHHHHHHhcCCHHHHHHH--------HHHHHhCCCC
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSL----FHP-DLVTWSALITGYSQQGDYGKALYY--------FRKLNMQGKK 303 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~--------~~~m~~~~~~ 303 (554)
..+...+.+....-..+..++.|.-+|+-. +.. ....|..+...=-+-|+.....+. ++.+... -+
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np 319 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CC
Confidence 112233334444344455555555555433 111 122333333322233333322222 1222222 13
Q ss_pred CCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchH------HHHHHHHHHH---HccCChHHHHHHHhccCC--CC-
Q 045069 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSV------MVSSALVDMY---SKCGYLGLGIQVFETMSE--RN- 371 (554)
Q Consensus 304 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~---~~~g~~~~A~~~~~~~~~--~~- 371 (554)
.|-.++-..+..-...|+.+...++++..+..-.+.+. .+|-.+=-++ ....+.+.+.++|+...+ |.
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk 399 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK 399 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence 34445555555555566666666666666554322111 1111111111 134566666666665543 22
Q ss_pred cchHHH----HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHH
Q 045069 372 IITYNS----VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYI 447 (554)
Q Consensus 372 ~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 447 (554)
..||.. ...-..++.+...|.+++-..+. ..|...+|...|..-.+.++++....++++..+ --|-+..+|.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 223332 23333456677777777766554 667777777777777777777777777777766 2344566666
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH---
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLPKPVDPA----VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA--- 520 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--- 520 (554)
.....-...|+.+.|..+|+-+...|... .|...+..-...|.++.|..+|+++++..+... ++...+..-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~s~~ 554 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhcccc
Confidence 66666667777777777777765544333 334444444566777777777777777655433 4444433322
Q ss_pred --ccC-----------ChhHHHHHHHHHh
Q 045069 521 --EDG-----------RWDDVMKLRDDIV 536 (554)
Q Consensus 521 --~~g-----------~~~~A~~~~~~~~ 536 (554)
+.| ....|..+|+++.
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 233 4556666666653
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=4.1e-13 Score=128.20 Aligned_cols=275 Identities=9% Similarity=-0.007 Sum_probs=191.4
Q ss_pred cCChhhHHHHHhhcCCC--ChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhccCCcchhHH
Q 045069 253 CNCMNSAYHVFNSLFHP--DLVTWSAL-ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA--SVLAAAAKSANVWPGAV 327 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~~--~~~~~~~l-~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~ 327 (554)
.|+++.|++.+....+. ++..+..+ ..+..+.|+++.|...+.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777776665332 23333333 33447778888888888887654 34443222 33556677788888888
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCc-----------chHHHHHHHHHcCCChHHHHHHHH
Q 045069 328 IHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI-----------ITYNSVILGLGLHGFTYQAFEFFR 396 (554)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~ 396 (554)
.++.+.+.. +-++.....+...|.+.|++++|.+++..+.+... ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888877766 45567777788888888888888888877764211 123333444444555666667777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC
Q 045069 397 DIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVD 474 (554)
Q Consensus 397 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 474 (554)
.+.+. .+.++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++++.+++.. .+.+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66443 3446677888888899999999999999888663 4554322 2233345588899998888764 3556
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+..+..+...|...+++++|.+.|+++.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677888889999999999999999999999887644 55788899999999999999998765
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.58 E-value=3.2e-12 Score=122.16 Aligned_cols=223 Identities=12% Similarity=-0.032 Sum_probs=146.4
Q ss_pred HHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcch
Q 045069 248 SMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324 (554)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 324 (554)
..+...|+++.|...++.+ .+.++.....+...|.+.|++++|.+++..+.+.+..++. ....+-
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~----------- 228 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE----------- 228 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-----------
Confidence 3444555555555555544 1223445555555666666666666666666555433211 111000
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 045069 325 GAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEK 401 (554)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 401 (554)
..+|..++.......+.+...++++.+.+ .+......+...+...|+.++|.+++++..+
T Consensus 229 ----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~- 291 (398)
T PRK10747 229 ----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK- 291 (398)
T ss_pred ----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 01223333333344455666666666653 4666777888888889999999999988887
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHH
Q 045069 402 GLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVDPAVSGA 480 (554)
Q Consensus 402 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 480 (554)
..|+.... ++.+....++.+++.+..+...++ .+-|+..+..+.+.+.+.|++++|.+.|+... ..|+...+..
T Consensus 292 -~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~ 366 (398)
T PRK10747 292 -RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAW 366 (398)
T ss_pred -cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34555322 233444668889999999888873 55667778888999999999999999998864 4688888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+...+.+.|+.++|.+++++....
T Consensus 367 La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 899999999999999999988765
No 43
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.3e-10 Score=102.24 Aligned_cols=490 Identities=10% Similarity=0.031 Sum_probs=346.6
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcc-cHHHHH
Q 045069 36 RDPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNF-TYACIT 111 (554)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll 111 (554)
.+...|....+-=-..+++..|..+|++.. ..+...|-.-+..=.++..+..|..+++..... -|-+. .|---+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 355566666666666778888999998865 456777888888888999999999999998875 34333 333333
Q ss_pred HHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccC--CCCcchHHHHHHHHHhCCChhhH
Q 045069 112 RACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVS--DPDLVLCNSMISGFAHCGFWDKS 189 (554)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a 189 (554)
-.=-..|++..|.++|+.-.+ ..|+...|.+.|..=.+...++.|..++++.. .|++.+|--...-=-++|....|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 344466999999999988765 47999999999999999999999999999865 49999998888888899999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHc----ccCCccchhhHHHHHHHHhcCCC-chhHHHHHHHHHHhcCChhhHHHHH-
Q 045069 190 LQLFDWMLRLGKTPDEYTLVGLISGL----WEPSLLSVGQGIHGFCLKSSFDS-YDYVSSVLVSMYARCNCMNSAYHVF- 263 (554)
Q Consensus 190 ~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~- 263 (554)
..+|+...+. -.|...-..+..++ .....++.|.-++...+++-... ....|..+...--+-|+.....+..
T Consensus 227 R~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 9999987663 22333333333344 34567788888888887765443 2445566665555667655544432
Q ss_pred -------hhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHH---hccCCcc
Q 045069 264 -------NSLFH---PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPV-------LIASVLAAA---AKSANVW 323 (554)
Q Consensus 264 -------~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~---~~~g~~~ 323 (554)
+.+.. .|-.+|--.++.--..|+.+...++|++.+.. ++|-.. .|.-+=-++ ....+++
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 33333 35556666777777889999999999999865 455321 122111122 3568889
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHH----HccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHHHH
Q 045069 324 PGAVIHGYVIQHGFELSVMVSSALVDMY----SKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
.+.++++..++. ++....|+.-+--+| .++.++..|.+++..... |-..+|...|..-.+.++++.+..++++
T Consensus 384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998873 444555555544333 467899999999988763 8888999999999999999999999999
Q ss_pred HHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCCh
Q 045069 398 IIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDP 475 (554)
Q Consensus 398 m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 475 (554)
.++ ..| +..+|......-...|+.+.|..+|.-..+...+......+.+.|+.-...|.++.|..+++++.. .+..
T Consensus 463 fle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 463 FLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 999 455 456888888888889999999999999987533344456677777777889999999999999753 4444
Q ss_pred hhHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHhcC--CCCchhHHHHHHH----HHccCChhHHHHHHH
Q 045069 476 AVSGALLSCCH-----IYG-----------NSDLAEIVAHQLFEND--PRKGAYKVMLSNT----YAEDGRWDDVMKLRD 533 (554)
Q Consensus 476 ~~~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~----~~~~g~~~~A~~~~~ 533 (554)
..|..+...-. +.+ ....|..+|+++.... ..+..-..+|..+ -...|...+...+-.
T Consensus 541 kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s 620 (677)
T KOG1915|consen 541 KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQS 620 (677)
T ss_pred hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 56666655433 233 5667888888887662 1212333333333 334565555555544
Q ss_pred HH
Q 045069 534 DI 535 (554)
Q Consensus 534 ~~ 535 (554)
+|
T Consensus 621 ~m 622 (677)
T KOG1915|consen 621 KM 622 (677)
T ss_pred hc
Confidence 44
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.2e-14 Score=132.63 Aligned_cols=252 Identities=17% Similarity=0.154 Sum_probs=109.8
Q ss_pred HHHHHHHhcCChhhHHHHHhhc-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 045069 245 VLVSMYARCNCMNSAYHVFNSL-----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKS 319 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 319 (554)
.+...+.+.|++++|+++++.. ...+...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456677778888888888432 1235555666666777788888888888888766533 45556666666 688
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC-----CCCcchHHHHHHHHHcCCChHHHHHH
Q 045069 320 ANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS-----ERNIITYNSVILGLGLHGFTYQAFEF 394 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 394 (554)
+++++|..++....+.. +++..+...+..+.+.++++++.++++.+. .++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888887765543 456667778888889999999999888754 24566788888889999999999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 045069 395 FRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--K 471 (554)
Q Consensus 395 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 471 (554)
+++.++ ..|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|+.++++.. .
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999999 5675 557888999999999999999999998885 46777888899999999999999999999964 3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+.|+.....+..++...|+.++|.++.+++.+.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 668889999999999999999999999887653
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=5.3e-12 Score=121.36 Aligned_cols=282 Identities=9% Similarity=0.003 Sum_probs=146.9
Q ss_pred hcCChhhHHHHHhhcCC--CCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHH
Q 045069 252 RCNCMNSAYHVFNSLFH--PDL-VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 252 ~~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 328 (554)
..|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|...+.+..+....+....-......+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555544422 221 122223344555566666666665554332111111222234445555666666666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC---CcchHHH----HHHHHHcCCChHHHHHHHHHHHHc
Q 045069 329 HGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER---NIITYNS----VILGLGLHGFTYQAFEFFRDIIEK 401 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~a~~~~~~m~~~ 401 (554)
++.+.+.. +-++.+...+...+...|+++.|.+.+..+.+. +...+.. ...++...+..+.....+..+.+.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66655554 334445555666666666666666665555531 1111110 111111222222223344444432
Q ss_pred CC---CCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH--HHhcCChHHHHHHHHhCC--CCCC
Q 045069 402 GL---NPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL--LGLAGNLEEAYSFIWSLP--KPVD 474 (554)
Q Consensus 402 g~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~--~~~~ 474 (554)
.. +.+...+..+...+...|+.++|.+++++..++ .+.+......++.. ....++.+.+.+.+++.. .+.+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 11 125566666777777777777777777777663 22222110011121 223466666777776643 2344
Q ss_pred h--hhHHHHHHHHHhcCChHHHHHHHH--HHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 475 P--AVSGALLSCCHIYGNSDLAEIVAH--QLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 475 ~--~~~~~l~~~~~~~~~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+ ....++...+.+.|++++|.+.|+ .+.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 566677788888888888888888 45556665544 55778888888888888888887643
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.9e-12 Score=112.60 Aligned_cols=287 Identities=13% Similarity=0.065 Sum_probs=189.7
Q ss_pred HHHHhcCChhhHHHHHhhc----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCC
Q 045069 248 SMYARCNCMNSAYHVFNSL----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK--KADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~ 321 (554)
.++......+++..-.+.. ...+...-+....+.-...|+++|+.+|+++.+... --|..+|..++-.-...
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~-- 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK-- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh--
Confidence 3444444444444443333 112222223333444556777888888887776631 12445666555432221
Q ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCC---cchHHHHHHHHHcCCChHHHHHHHHHH
Q 045069 322 VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERN---IITYNSVILGLGLHGFTYQAFEFFRDI 398 (554)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m 398 (554)
....++.+-.-.--+--+.|+..+.+.|.-.++.++|...|++..+.| ...|+.+..-|...++...|++.++..
T Consensus 313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 111222221111113345667777778888888888888888877533 346788888888888888888888888
Q ss_pred HHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCh
Q 045069 399 IEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDP 475 (554)
Q Consensus 399 ~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~ 475 (554)
++ +.| |-..|-.|.++|.-.+...=|+-.|++..+ --|-|...|.+|.++|.+.++.++|++-|.+... ..+.
T Consensus 391 vd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~ 466 (559)
T KOG1155|consen 391 VD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG 466 (559)
T ss_pred Hh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence 88 555 445888888888888888888888888866 3445688888888888888888888888888653 3345
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFEN-------DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..+..|...+-+.++.++|.+.+++.++. .|....+..-|+.-+.+.+++++|..+......-+...
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~ 540 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETEC 540 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchH
Confidence 78888888888888888888888888774 34444455557777788888888888777665544433
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.54 E-value=1.3e-11 Score=118.70 Aligned_cols=143 Identities=13% Similarity=0.001 Sum_probs=101.8
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHhcCCchHHHHHHHH
Q 045069 358 GLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDEST--F-SALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 358 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~~~~~~a~~~~~ 431 (554)
+...+.++...+ .+...+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 344444544442 36677777888888888888888888888884 444442 1 112222344577788888888
Q ss_pred HhHHHhCCCCCh--hHHHHHHHHHHhcCChHHHHHHHHh--C-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 432 RMTEEYGIQAKT--EHYIYMVKLLGLAGNLEEAYSFIWS--L-PKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 432 ~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..+. .+-|+ ....++...+.+.|++++|.+.|+. . ...|++..+..+...+.+.|+.++|.+++++....
T Consensus 324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87763 33344 5667888889999999999999983 3 34778888888888899999999999999987665
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=4e-11 Score=110.59 Aligned_cols=254 Identities=8% Similarity=-0.062 Sum_probs=130.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 279 TGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
+-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+++.- +..+.+|-++.--|...|+..
T Consensus 252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence 33444444444444444444321 2222333333334444444444444444444332 334445555555555556666
Q ss_pred HHHHHHhccCCCC---cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 359 LGIQVFETMSERN---IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 359 ~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
+|.+.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-....+..+.--|.+.++.+.|.++|.+...
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 6666665544322 235555666666666666666666555542 111112233334445556666666666666544
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 436 EYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK---------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
-.|.|+...+-+.-.....+.+.+|..+|+.... ..-.+++..|+.+|.+.+.+++|+..+++++...|
T Consensus 409 --i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 409 --IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred --cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 2333455555555555556666666666655320 01223455556666666666666666666666666
Q ss_pred CCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 507 RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 507 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.++.++..++-+|...|+++.|.+.|.+.+-
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 6666666666666666666666666665543
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.1e-12 Score=123.12 Aligned_cols=248 Identities=13% Similarity=0.047 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHccCChHHHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF--ELSVMVSSALVDMYSKCGYLGLGIQV 363 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 363 (554)
+..+|...|.+... .+.-+......+-.+|...++++++.++|+.+.+... .-+..+|.+.+--+-+.-...---+-
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 56788999988443 3444456777888899999999999999999987632 23566777766544332221111111
Q ss_pred HhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-
Q 045069 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQA- 441 (554)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~- 441 (554)
+-.+.+..+.+|.++..+|..+++.+.|++.|++.++ +.| ...+|+.+..-+....++|.|...|+.... +.|
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VDPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CCch
Confidence 1222235678999999999999999999999999998 777 456899999889999999999999998754 233
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+-.+|.-+.-.|.++++++.|+-.|+++.. |.+......++..+.+.|+.++|+++++++...+|.++-.-+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 234455678889999999999999999753 667778888888999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHhhcC
Q 045069 520 AEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~ 539 (554)
...+++++|+..++++.+.-
T Consensus 568 ~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELV 587 (638)
T ss_pred HhhcchHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.4e-10 Score=101.26 Aligned_cols=287 Identities=11% Similarity=-0.023 Sum_probs=174.7
Q ss_pred CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHH
Q 045069 183 CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHV 262 (554)
Q Consensus 183 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 262 (554)
.|+|.+|+++..+-.+.+-.| ...|..-.++.-+.|+.+.+-.++.++.+....++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 355555555554443333222 1222233333334444444444444443333333333444444455555555555544
Q ss_pred Hhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc
Q 045069 263 FNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL 339 (554)
Q Consensus 263 ~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (554)
+.++ .+.++........+|.+.|++.....++.+|.+.|.--++..- ..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~l 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------RL 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------HH
Confidence 4443 3345566666667777777777777777777666644333211 01
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccC---CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMS---ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 416 (554)
-..+|..+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..+..+++..|+..+ .-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHh
Confidence 12345555555555555555556666666 35566677778888888999999999988888877776222 234
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL-PKPVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
+.+.++...-.+..++..+. .+.++..+.+|...|.+.+.|.+|.+.|+.. ...|+..++..+..++.+.|+...|.
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 56778888777777777764 4444577788888888888888888888764 45778888888888888888888888
Q ss_pred HHHHHHHhc
Q 045069 496 IVAHQLFEN 504 (554)
Q Consensus 496 ~~~~~~~~~ 504 (554)
+..++....
T Consensus 382 ~~r~e~L~~ 390 (400)
T COG3071 382 QVRREALLL 390 (400)
T ss_pred HHHHHHHHH
Confidence 888777654
No 51
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.47 E-value=2.7e-09 Score=100.09 Aligned_cols=512 Identities=12% Similarity=0.111 Sum_probs=276.5
Q ss_pred HHHHHhhhccchhhHHHHHHHH-HHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChH
Q 045069 8 LVLELSKSHQSLSRTKELHALV-AKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFN 86 (554)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 86 (554)
.++..+-..+++...++.++.. .+..+.....+|...+......|-++-+.+++.+..+-++..-+--|..++..++++
T Consensus 107 ~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 107 DYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchH
Confidence 4455566666666665444433 444555556677777777777777777777777766556666777778888888888
Q ss_pred HHHHHHHHhHHcC------CCCCcccHHHHHHHhhcCCChh---hHHHHHHHHHHhcCCCCH--hHHHHHHHHHHcCCCH
Q 045069 87 DAKSLFKNLLRTQ------LKPDNFTYACITRACSENSDLP---GLRFVHGGAIVSGLGRDS--ITSSALVTAYSKLSLI 155 (554)
Q Consensus 87 ~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~ 155 (554)
+|.+.+....... -+.+-..|..+-...++..+.- ....+++.+... -+|. ..|.+|.+-|.+.|++
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhh
Confidence 8888777765431 2233445555555555443332 233333333322 2333 4678888888999999
Q ss_pred hHHHHhhcccCC--CCcchHHHHHHHHHhC----------------C------ChhhHHHHHHHHHHCCC----------
Q 045069 156 DEAIKVFDGVSD--PDLVLCNSMISGFAHC----------------G------FWDKSLQLFDWMLRLGK---------- 201 (554)
Q Consensus 156 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~----------------~------~~~~a~~~~~~m~~~~~---------- 201 (554)
+.|..+|++... ..+.-|..+.++|++- + +++-.+.-|+.+.+.+.
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 999988877654 2333344433333321 1 12222333443333210
Q ss_pred CC-ChhhHHHHHHHcccCCccchhhHHHHHHHHhc-----CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCC-----
Q 045069 202 TP-DEYTLVGLISGLWEPSLLSVGQGIHGFCLKSS-----FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPD----- 270 (554)
Q Consensus 202 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 270 (554)
.| +..+|..-+ -...|+..+....+.++++.- +..-...|..+.+.|-..|+++.|..+|++..+-+
T Consensus 345 n~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 01 111111111 123445555555666555431 11123467788888999999999999998884422
Q ss_pred --hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----------------HHHHHHHHHHHhccCCcchhHHHHHH
Q 045069 271 --LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD-----------------PVLIASVLAAAAKSANVWPGAVIHGY 331 (554)
Q Consensus 271 --~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~ 331 (554)
..+|..-...=.++.+++.|+.+++......-.|. ...+...+..--..|-++....+++.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 23455555555667788888888776643211111 11122223333344556666666666
Q ss_pred HHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC----CCcc-hHHHHHHHHHc---CCChHHHHHHHHHHHHcCC
Q 045069 332 VIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE----RNII-TYNSVILGLGL---HGFTYQAFEFFRDIIEKGL 403 (554)
Q Consensus 332 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~ 403 (554)
+.+..+.....+.| ..-.+....-++++.++|++-.. |++. .|+..+.-+.+ ....+.|..+|++.++ |+
T Consensus 503 iidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 66655432222222 22223445557777777776553 4442 55555444432 2357778888888777 55
Q ss_pred CCCHHHHHHHH--HHHhcCCchHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhH
Q 045069 404 NPDESTFSALL--CACCHGGLVNDGREIFTRMTEEYGIQAK--TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVS 478 (554)
Q Consensus 404 ~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 478 (554)
+|...-+..|+ ..-.+.|-...|..++++... ++++. ..+|+..|.-....=-...-..++++... -|+...-
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r 658 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAR 658 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHH
Confidence 55443222222 222345777777778877665 45543 34566555433322222222233333211 2233322
Q ss_pred HHH---HHHHHhcCChHHHHHHHHHHHhc-CCC-CchhHHHHHHHHHccCChhH
Q 045069 479 GAL---LSCCHIYGNSDLAEIVAHQLFEN-DPR-KGAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 479 ~~l---~~~~~~~~~~~~A~~~~~~~~~~-~p~-~~~~~~~l~~~~~~~g~~~~ 527 (554)
... ...-.+.|..+.|..+|.-.-+. +|. ++.++...-..-.+.|+-+.
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 222 22234667788888888777776 342 45566666666677777333
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=2.1e-11 Score=117.99 Aligned_cols=255 Identities=12% Similarity=0.053 Sum_probs=173.6
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCC
Q 045069 90 SLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPD 169 (554)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 169 (554)
+++-.+...|+.||..||..++.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667788899999999999999999999999888 8888888888888888899998888888877665 578
Q ss_pred cchHHHHHHHHHhCCChhh---HHHHHHHHH----HCCCCCChhhHHHHHHHcccCCccch--------hhHHHHHHHHh
Q 045069 170 LVLCNSMISGFAHCGFWDK---SLQLFDWML----RLGKTPDEYTLVGLISGLWEPSLLSV--------GQGIHGFCLKS 234 (554)
Q Consensus 170 ~~~~~~li~~~~~~~~~~~---a~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~--------a~~~~~~~~~~ 234 (554)
..+|..|..+|...||... +.+.+.... ..|+-.-...+-..++++-. -..+. -+.++....+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~-~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPH-SLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcc-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999988654 222222221 12222222222222222211 11110 11223333333
Q ss_pred c--CCCchhHHHH--HHHHHH-hcCChhhHHHHHhhcCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 045069 235 S--FDSYDYVSSV--LVSMYA-RCNCMNSAYHVFNSLFH-PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL 308 (554)
Q Consensus 235 ~--~~~~~~~~~~--l~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 308 (554)
+ .+........ .++-.. ....+++-........+ +++.+|.+++.+-..+|+.+.|..++.+|.+.|.+.+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 3 1111110001 111111 11233333444444444 8999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCC
Q 045069 309 IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGY 356 (554)
Q Consensus 309 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (554)
|..++-+ .++...++.+++-|...|+.|+..|+...+..+..+|.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888766 88888899999999999999999999988888887655
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=9.7e-11 Score=100.55 Aligned_cols=288 Identities=15% Similarity=0.141 Sum_probs=185.2
Q ss_pred CChhhHHHHHhhcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhccCCcchhHH
Q 045069 254 NCMNSAYHVFNSLFHPDLVTW---SALITGYSQQGDYGKALYYFRKLNMQGKKADP---VLIASVLAAAAKSANVWPGAV 327 (554)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~ 327 (554)
.+.++|.+.|-+|.+.|+.++ -+|.+.|.+.|..|+|+.+-+.+.++.--+.. .....+..-|...|-++.|+.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 456666666666644444333 34556666667777777666666543211111 123334455666677777777
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc--------hHHHHHHHHHcCCChHHHHHHHHHHH
Q 045069 328 IHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNII--------TYNSVILGLGLHGFTYQAFEFFRDII 399 (554)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~ 399 (554)
+|..+.+.+ ..-......|+..|....+|++|+++-+++.+.+.. .|.-+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 777766544 334455666777788888888887777765543322 34445555556677888888888888
Q ss_pred HcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhh
Q 045069 400 EKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVDPAV 477 (554)
Q Consensus 400 ~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 477 (554)
+ ..|+.. .-..+.+.....|+++.|.+.++...+. +...-+.+...|..+|...|+.++...++.++. ..+.+..
T Consensus 208 q--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 208 Q--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred h--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 7 345443 3445566677888888888888888774 444446677788888888888888888887754 3555555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH--ccCChhHHHHHHHHHhhcCCccCCC
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA--EDGRWDDVMKLRDDIVDNGLRKEAG 545 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~ 545 (554)
...+........-.+.|...+.+-+...|.-...+..+-.-.. ..|++.+.+..++.|+...++..|.
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 5555555555566677777877777778876666665543333 3456888888888888776666553
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=3.5e-10 Score=100.28 Aligned_cols=278 Identities=10% Similarity=0.033 Sum_probs=205.3
Q ss_pred cCChhhHHHHHhhcCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHH
Q 045069 253 CNCMNSAYHVFNSLFH---PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIH 329 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 329 (554)
.|++..|++...+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+..-.++...+-+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4677777777665522 2333444455566777888888888887776544556666666677777888888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCc-----------chHHHHHHHHHcCCChHHHHHHHHHH
Q 045069 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI-----------ITYNSVILGLGLHGFTYQAFEFFRDI 398 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m 398 (554)
..+.+.+ +-.+.+.....++|.+.|++.....++..+.+... .+|+.++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8777776 55667778888888888888888888888875222 35777777777777777777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChh
Q 045069 399 IEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPA 476 (554)
Q Consensus 399 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~ 476 (554)
..+ .+-++..-..++.-+.+.|+.++|.++.++..++ +..|+. ..++ ...+-++.+.-++..+... .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 654 5556666777888889999999999999999886 666661 1122 2345566666665555532 255668
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.+.+|...|.+++.+.+|.+.++.+++..| +.+.+..++.++.+.|+..+|.++.++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 899999999999999999999998888776 4678889999999999999999999998743
No 55
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=3.4e-09 Score=98.60 Aligned_cols=437 Identities=13% Similarity=0.079 Sum_probs=259.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHH--HHHHHH--
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSA--LVTAYS-- 150 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~-- 150 (554)
=+.-+...|++++|.....++...+ +-+...+..=+.++.+.+.+++|..+.+.- + -..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHH
Confidence 3455667788899999888888764 334556777777788888888888555432 1 1112222 234444
Q ss_pred cCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCC-ChhhHHHHHHHcccCCccchhhHHHH
Q 045069 151 KLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTP-DEYTLVGLISGLWEPSLLSVGQGIHG 229 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 229 (554)
+.+..|+|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-... .+ .
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----Q 162 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----H
Confidence 67889999999886665665566777788889999999999999987664321 111111122111100 00 0
Q ss_pred HHHHhcCCCc--hhHHHHHHHHHHhcCChhhHHHHHhhc--------CCCCh----------hhHHHHHHHHHhcCCHHH
Q 045069 230 FCLKSSFDSY--DYVSSVLVSMYARCNCMNSAYHVFNSL--------FHPDL----------VTWSALITGYSQQGDYGK 289 (554)
Q Consensus 230 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~----------~~~~~l~~~~~~~g~~~~ 289 (554)
.+......|+ -..+-.....+...|++.+|+++++.. .+.|. .+--.|...+...|+-.+
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1111222221 112222344567788999998888776 11111 123345667788999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH---HHHHhccCCcch--hHHHHHHHH-----------HhcCCchHHHHHHHHHHHHc
Q 045069 290 ALYYFRKLNMQGKKADPVLIASV---LAAAAKSANVWP--GAVIHGYVI-----------QHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~l---~~~~~~~g~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~ 353 (554)
|..++...++.. .+|....... +-+.....++-. ++..++... .+.-.-....=+.++..|
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~-- 319 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF-- 319 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999998775 3443222222 222222222222 111111111 110011111223333333
Q ss_pred cCChHHHHHHHhccCCCC-cchHHHHHHH-HH-cCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCchHHHHH
Q 045069 354 CGYLGLGIQVFETMSERN-IITYNSVILG-LG-LHGFTYQAFEFFRDIIEKGLNPDE--STFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~-~~~~~~l~~~-~~-~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~ 428 (554)
.+..+.+.++-....... ...+.+++.. .. +...+..+.+++...-+. .|.. ......+......|+++.|.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 345566666666665322 2333444433 22 223577888888877764 3443 355566677788999999999
Q ss_pred HHH--------HhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-ChhhHHHHHHHHHhcCCh
Q 045069 429 IFT--------RMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--------KPV-DPAVSGALLSCCHIYGNS 491 (554)
Q Consensus 429 ~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~~~~ 491 (554)
++. .+.+. +.. +.+..++...+.+.++.+.|..++.+.. ..+ -..++..+...-.+.|+.
T Consensus 398 il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 999 44442 333 4556677778888887766666665542 121 122333344445677999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 492 DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
++|...++++++.+|++......++.+|++. +.+.|..+-+.+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999999999887 778887776554
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=3.4e-11 Score=107.40 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=160.4
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045069 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC 415 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 415 (554)
.....+..+...+...|++++|.+.+++..+ | +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456667777888888888888888887653 3 34567778888889999999999999988853 234557777888
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
.+...|++++|.+.+++.......+.....+..+...+...|++++|.+.+++.. .+.+...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 8899999999999999987631223345567778888999999999999998864 24456778888899999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 494 AEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
|...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999998888888888899999999999999998887654
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=4.3e-10 Score=96.67 Aligned_cols=287 Identities=14% Similarity=0.116 Sum_probs=170.2
Q ss_pred CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCC---HhHHHHHHHHHHcCCCHhHHH
Q 045069 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRD---SITSSALVTAYSKLSLIDEAI 159 (554)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~ 159 (554)
++.++|.++|-+|.+.. +-+..+.-+|.+.+.+.|.++.|.++...+.++.--+. ....-.|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 56777777777777642 12334455677777777777777777777766421111 112334556677777788888
Q ss_pred HhhcccCC-C--CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcC
Q 045069 160 KVFDGVSD-P--DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSF 236 (554)
Q Consensus 160 ~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 236 (554)
.+|..+.+ + -..+...|+..|-...+|++|++.-+++.+.+..+ |+.-|
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~----~~~eI------------------------ 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT----YRVEI------------------------ 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc----chhHH------------------------
Confidence 88777765 2 23345567777777788888877777776554332 22111
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIA-SVLAA 315 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~ 315 (554)
...|.-|...+....+.++|..++.+..+.+ |+.+--+ .+-..
T Consensus 180 ----------------------------------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v 223 (389)
T COG2956 180 ----------------------------------AQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRV 223 (389)
T ss_pred ----------------------------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHH
Confidence 1123334444445555666666666555442 2222111 22234
Q ss_pred HhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHH
Q 045069 316 AAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
....|+++.|.+.++...+.+...-..+...|..+|...|+.++....+..+.+ ++...-..+...-......+.|..
T Consensus 224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~ 303 (389)
T COG2956 224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQA 303 (389)
T ss_pred HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHH
Confidence 455566666666666666665555566667777777777777777777776653 444455555555445555666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhc---CCchHHHHHHHHHhHHH
Q 045069 394 FFRDIIEKGLNPDESTFSALLCACCH---GGLVNDGREIFTRMTEE 436 (554)
Q Consensus 394 ~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~ 436 (554)
.+.+-+. -+|+...+..++..... .|...+-...++.|...
T Consensus 304 ~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 304 YLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 6666555 46888888888876543 34455666666666653
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=2.1e-10 Score=103.90 Aligned_cols=217 Identities=11% Similarity=-0.028 Sum_probs=157.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI 361 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (554)
.-.|+.-.|...|+..+.....++.. |-.+...|....+.++....|....+.+ +-++.+|..-.+++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 34677777777887777665444432 5566667778888888888888887766 456677777777788888888888
Q ss_pred HHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC
Q 045069 362 QVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438 (554)
Q Consensus 362 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 438 (554)
.-|++... .++..|-.+..+..+.+++++++..|++..++ ++..+..|+.....+...++++.|.+.|+...+
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 88888775 34456666666777788889999999988875 555566888888888889999999998888866
Q ss_pred CCCC---------hhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 439 IQAK---------TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 439 ~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
+.|+ +.+...++..- -.+++..|.+++++... +.....+..|...-.+.|+.++|+++|++....-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2232 22222232222 23888889999888653 5566778888888888999999999998887763
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=8.6e-09 Score=99.04 Aligned_cols=403 Identities=12% Similarity=0.047 Sum_probs=262.8
Q ss_pred hcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhh-H
Q 045069 133 SGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYT-L 208 (554)
Q Consensus 133 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~ 208 (554)
..+.-|..+|..|.-+..+.|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-......|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34556888898898999999999999999998765 4456788888899999999999999988765443354443 3
Q ss_pred HHHHHHcc-cCCccchhhHHHHHHHHh--c--CCCchhHHHHHHHHHHhcC-----------ChhhHHHHHhhcCC---C
Q 045069 209 VGLISGLW-EPSLLSVGQGIHGFCLKS--S--FDSYDYVSSVLVSMYARCN-----------CMNSAYHVFNSLFH---P 269 (554)
Q Consensus 209 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~---~ 269 (554)
-..-..|. +.+..+++..+-..+.+. + -...+..+..+.-+|...- ...++.+.+++..+ .
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333333 456666666666555552 1 1223344555555554321 12345556666522 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh-cCC----------
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH-GFE---------- 338 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---------- 338 (554)
|+.+-..+.--|+..++.+.|.+..++..+.+-.-+...+..+.-.+...+++..|+.+.+..... |..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 333333334457778899999999999998877788888888888889999999999988776532 210
Q ss_pred --------chHHHHHHHHHHHHc------cCChHHHHHHHhccC----C--CCcchHHHHHHHHHcCCChHHHHHHHHHH
Q 045069 339 --------LSVMVSSALVDMYSK------CGYLGLGIQVFETMS----E--RNIITYNSVILGLGLHGFTYQAFEFFRDI 398 (554)
Q Consensus 339 --------~~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~----~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 398 (554)
-...|+..++..+-. .++-....+....+. + ..+.++..+..-....+ ..+..-.. +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-c
Confidence 011122222222211 111111122222211 0 11122322222221111 00000000 1
Q ss_pred HHcCCCCCH--------HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 399 IEKGLNPDE--------STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 399 ~~~g~~p~~--------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
...-+.|.+ ..|......+.+.+..++|...+.+... -.+.....|......+...|.+++|.+.|....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 111122221 1245566677888999999988888876 356667888888889999999999999998854
Q ss_pred --CCCChhhHHHHHHHHHhcCChHHHHH--HHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 471 --KPVDPAVSGALLSCCHIYGNSDLAEI--VAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 471 --~~~~~~~~~~l~~~~~~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.|.+..+..++...+...|+...|.. ++..+++.+|.++..|..++.++.+.|+.++|.+.|+...+...
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 46778889999999999999888888 99999999999999999999999999999999999999987543
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.2e-09 Score=95.12 Aligned_cols=132 Identities=15% Similarity=0.057 Sum_probs=79.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
--.++.+.+.-..++++++.+++....--...|...| .+..+.+..|.+.+|+++|-.+... .++.+..-...|.++|
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCY 438 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHH
Confidence 3445555566666677777777666654333333333 3556777777777777777766542 3333333334566677
Q ss_pred HhcCChHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 454 GLAGNLEEAYSFIWSLPKPVDPAVSGA-LLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
.++++.+-|..++-++..+.+..++.. +...|.+.+.+--|-..|..+...+|.
T Consensus 439 i~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 439 IRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 777777777777766665444444433 334577777777777777776666653
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=2e-10 Score=109.25 Aligned_cols=231 Identities=14% Similarity=0.142 Sum_probs=168.4
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHh-----c-CCchH-HHHHHHHHHHHccCChHHHHHHHhccCC-------CC-
Q 045069 307 VLIASVLAAAAKSANVWPGAVIHGYVIQH-----G-FELSV-MVSSALVDMYSKCGYLGLGIQVFETMSE-------RN- 371 (554)
Q Consensus 307 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~- 371 (554)
.+...+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++.+|..+|+++.. ++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555777777778888888777776554 1 12333 2334577788888888888888887652 22
Q ss_pred ---cchHHHHHHHHHcCCChHHHHHHHHHHHH-----cCCC-CCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhC--C
Q 045069 372 ---IITYNSVILGLGLHGFTYQAFEFFRDIIE-----KGLN-PDES-TFSALLCACCHGGLVNDGREIFTRMTEEYG--I 439 (554)
Q Consensus 372 ---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~-p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~ 439 (554)
..+++.|...|.+.|++++|..++++..+ .|.. |... .++.+...|...+++++|..++++..+.+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 23667777788888888888887777654 1222 2222 366777788899999999999887765422 2
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 045069 440 QAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK----------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN- 504 (554)
Q Consensus 440 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 504 (554)
.++ ..+++.|...|...|++++|.++++++.. ......++.+...|.+.++..+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 46788999999999999999999988631 123456788888999999999999998887765
Q ss_pred ---C---CCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 505 ---D---PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 505 ---~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
. |+....|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3 45557888999999999999999999998873
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=6.9e-09 Score=92.35 Aligned_cols=308 Identities=9% Similarity=-0.056 Sum_probs=210.4
Q ss_pred CCChhhHHHHHHHccc--CCccchhhHHHHHHHHh-cCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHH---
Q 045069 202 TPDEYTLVGLISGLWE--PSLLSVGQGIHGFCLKS-SFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWS--- 275 (554)
Q Consensus 202 ~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--- 275 (554)
.|...+....+.+++. .++...+...+-.+... -++.+......+.+++...|+.++|+..|++....|+.+..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444444554432 33444444444444333 46677788889999999999999999999887444433322
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
.....+.+.|+.++...+...+.... +-+...+..-....-..++++.|+.+-++.++.+ +.+...|-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 22334567788888777777665432 1122222222333345677788888777777654 344555555566777888
Q ss_pred ChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-cCCchHHHHHHH
Q 045069 356 YLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALL-CACC-HGGLVNDGREIF 430 (554)
Q Consensus 356 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~~ 430 (554)
+.++|.-.|+.... -+..+|..|+.+|...|++.+|...-+...+. +.-+..+...+. ..|. ...--++|..++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 99998888886553 46778999999999999999988888776663 344555665552 3333 233447788888
Q ss_pred HHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 431 TRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSL-PKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 431 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
++... +.|+ ....+.+...+...|+.++++.++++. ...+|....+.|...+...+.+++|.+.|..++..+|++
T Consensus 428 ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 428 EKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred Hhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 87754 4555 566778888888999999999999885 457888888999999999999999999999999999988
Q ss_pred chhHHHH
Q 045069 509 GAYKVML 515 (554)
Q Consensus 509 ~~~~~~l 515 (554)
......|
T Consensus 505 ~~sl~Gl 511 (564)
T KOG1174|consen 505 KRTLRGL 511 (564)
T ss_pred hHHHHHH
Confidence 7776666
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=7.9e-09 Score=99.81 Aligned_cols=430 Identities=11% Similarity=0.037 Sum_probs=212.2
Q ss_pred HHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcC----
Q 045069 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKL---- 152 (554)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---- 152 (554)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.++. +..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3455677777777777664443 3323334445566677777777777777777777632 444445555544222
Q ss_pred -CCHhHHHHhhcccCC--CCcchHHHHHHHHHhCCCh-hhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHH
Q 045069 153 -SLIDEAIKVFDGVSD--PDLVLCNSMISGFAHCGFW-DKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIH 228 (554)
Q Consensus 153 -g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 228 (554)
.+.+....+++++.. |...+...+.-.+.....+ ..+..++..+...|+++ +|+.+-..|...........++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 235555666665543 3222222222222221122 23444555666666543 3333333333333322222222
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 045069 229 GFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDL--VTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD- 305 (554)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~- 305 (554)
....... ...+.+.... -..-..|.. .++..+...|...|++++|++++++.++. .|+
T Consensus 167 ~~~~~~l---------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 167 EEYVNSL---------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHHhh---------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 2222110 0000000000 000011222 23345566666677777777777766655 344
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc----------hH
Q 045069 306 PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNII----------TY 375 (554)
Q Consensus 306 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------~~ 375 (554)
+..|..-...+-+.|++.+|...++.....+ .-|...=+-.+..+.++|++++|.+++....+++.. .|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 4456666666677777777777777666655 345555555666666777777777777666654321 11
Q ss_pred --HHHHHHHHcCCChHHHHHHHHHHHHc--CC---CCCHHH----------HHHHHHHHhcCCc-------hHHHHHHHH
Q 045069 376 --NSVILGLGLHGFTYQAFEFFRDIIEK--GL---NPDEST----------FSALLCACCHGGL-------VNDGREIFT 431 (554)
Q Consensus 376 --~~l~~~~~~~~~~~~a~~~~~~m~~~--g~---~p~~~~----------~~~ll~~~~~~~~-------~~~a~~~~~ 431 (554)
.....+|.+.|++..|++.|....+. .+ .-|.++ |..+++..-+... ...|.+++-
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl 386 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYL 386 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 22345667777777776655554431 01 112222 2223322111111 123444544
Q ss_pred HhHHHhCCCC-----------ChhHHHHHHHHH---HhcCChHHHHHHHHh-----------C----CCCCChhhHHHHH
Q 045069 432 RMTEEYGIQA-----------KTEHYIYMVKLL---GLAGNLEEAYSFIWS-----------L----PKPVDPAVSGALL 482 (554)
Q Consensus 432 ~~~~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~~-----------~----~~~~~~~~~~~l~ 482 (554)
++.+...... +..--..+..-. .+....+++.+.-.+ . +.+.|.... .
T Consensus 387 ~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~---G 463 (517)
T PF12569_consen 387 ELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDPL---G 463 (517)
T ss_pred HHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCcc---H
Confidence 4433200000 000001111101 111111122211100 0 012222222 2
Q ss_pred HHHHhcC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 483 SCCHIYG-NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 483 ~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
.-+.+.. =.++|..+++-+.+..|++..++..-.++|.+.|++--|++.+.+
T Consensus 464 ekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 464 EKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 2223333 477899999999999999999999999999999999999988765
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=2.7e-12 Score=81.77 Aligned_cols=50 Identities=30% Similarity=0.617 Sum_probs=39.3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhc
Q 045069 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSE 116 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 116 (554)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777888888888888888888888888888888888888888777764
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.31 E-value=6.9e-12 Score=79.86 Aligned_cols=50 Identities=28% Similarity=0.650 Sum_probs=44.9
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 045069 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 419 (554)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999998875
No 66
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.31 E-value=3.6e-08 Score=93.02 Aligned_cols=425 Identities=12% Similarity=0.066 Sum_probs=236.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHc
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSK 151 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 151 (554)
|..++..| ..+++...+.+.+.+.+. .+-...|.....-.+...|+-++|....+...+.++. +.++|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 44444444 556677777777776663 2223344444444455667778887777666664433 56677777777777
Q ss_pred CCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC-hhhHHHHHHHcccCCccchhhHH
Q 045069 152 LSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPD-EYTLVGLISGLWEPSLLSVGQGI 227 (554)
Q Consensus 152 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 227 (554)
..++++|++.|..... .|...|.-+.-.-++.|+++.....-..+.+. .|. ...|.....+..-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888876544 45556666665666677777776666666553 232 34455555566666777777777
Q ss_pred HHHHHHhc-CCCchhHHHHHH------HHHHhcCChhhHHHHHhhcCC--CChh-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 045069 228 HGFCLKSS-FDSYDYVSSVLV------SMYARCNCMNSAYHVFNSLFH--PDLV-TWSALITGYSQQGDYGKALYYFRKL 297 (554)
Q Consensus 228 ~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m 297 (554)
.+...+.. -.|+...+.-.. ....+.|..+.|.+.+....+ -|-. .-..-...+.+.++.++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 76666554 233333332211 122344444555444443311 0111 1112233344455555555555555
Q ss_pred HhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH-HHHhccCC--CCcch
Q 045069 298 NMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI-QVFETMSE--RNIIT 374 (554)
Q Consensus 298 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~~~~~ 374 (554)
... .||..-|... +..++.+-.+.-++. .+|....+ |....
T Consensus 246 l~r--nPdn~~Yy~~----------------------------------l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 246 LER--NPDNLDYYEG----------------------------------LEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred Hhh--CchhHHHHHH----------------------------------HHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 443 2443333332 223332222222222 33433331 11110
Q ss_pred HHHH-HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHh-C------------CC
Q 045069 375 YNSV-ILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY-G------------IQ 440 (554)
Q Consensus 375 ~~~l-~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~------------~~ 440 (554)
-..+ +.......-.+..-+++..+.+.|+++-...+.++ |-.....+-..++.-.+.... | -+
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 0000 11111112234455667777777766533333332 222111111111111111100 1 14
Q ss_pred CChhHH--HHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 441 AKTEHY--IYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 441 ~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
|+...| ..++..+-+.|+++.|..+++.... |.-+..|..-.+.+...|+.++|...++++.+.+-.|..+...-+
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA 446 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA 446 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence 554444 4577888899999999999998753 333445555667788899999999999999999888888887888
Q ss_pred HHHHccCChhHHHHHHHHHhhcCC
Q 045069 517 NTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.-..++++.++|.+++.++.+.|.
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhccc
Confidence 889999999999999999988775
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=6.5e-10 Score=111.21 Aligned_cols=241 Identities=10% Similarity=-0.000 Sum_probs=173.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHh---------ccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 286 DYGKALYYFRKLNMQGKKADP-VLIASVLAAAA---------KSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
+.++|...|++..+. .|+. ..+..+..++. ..+++++|...+++..+.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467888888888765 4443 34444444332 2344678888888888776 456777888888889999
Q ss_pred ChHHHHHHHhccCC--CC-cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHH
Q 045069 356 YLGLGIQVFETMSE--RN-IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 356 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
++++|...|++..+ |+ ...+..+...+...|++++|+..+++..+ ..|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998774 43 45678888899999999999999999998 556543 33344445667899999999999
Q ss_pred HhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhc---C
Q 045069 432 RMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVD-PAVSGALLSCCHIYGNSDLAEIVAHQLFEN---D 505 (554)
Q Consensus 432 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 505 (554)
+.... .+| ++..+..+..++...|+.++|...+.++.. .|+ ......+...+...| +.|...++.+.+. .
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 98763 334 455677888889999999999999988643 333 334455555566666 4788878777776 3
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
|.++.. +..+|.-.|+-+.+... +++.+.+
T Consensus 507 ~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 444433 55567778888877777 7777664
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.29 E-value=3.6e-10 Score=103.35 Aligned_cols=233 Identities=10% Similarity=-0.057 Sum_probs=135.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCCh
Q 045069 281 YSQQGDYGKALYYFRKLNMQG-KKAD--PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYL 357 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (554)
....+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 334556677777777776542 2222 2345556666777777777777777777665 34566777777777777777
Q ss_pred HHHHHHHhccCC--CC-cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhH
Q 045069 358 GLGIQVFETMSE--RN-IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMT 434 (554)
Q Consensus 358 ~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 434 (554)
++|...|+...+ |+ ..+|..+...+...|++++|++.+++..+ ..|+..........+...++.++|...|++..
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 777777777653 32 34666666777777777777777777776 34543322222222344567777777776654
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHH--HHHHHHhC-CC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 435 EEYGIQAKTEHYIYMVKLLGLAGNLEE--AYSFIWSL-PK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
. ..+|+...+ .+.. ...|+..+ +.+.+.+. .. +.....|..++..+.+.|++++|+..|+++++.+|
T Consensus 193 ~--~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 193 E--KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred h--hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4 233332221 2222 22344332 23222221 11 12334667777777777777777777777777775
Q ss_pred -CCchhHHHHHHHHHc
Q 045069 507 -RKGAYKVMLSNTYAE 521 (554)
Q Consensus 507 -~~~~~~~~l~~~~~~ 521 (554)
+.......+++....
T Consensus 268 ~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 268 YNFVEHRYALLELALL 283 (296)
T ss_pred chHHHHHHHHHHHHHH
Confidence 444444445444433
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.29 E-value=2.5e-07 Score=87.33 Aligned_cols=428 Identities=12% Similarity=0.063 Sum_probs=263.3
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHh-cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhC
Q 045069 105 FTYACITRACSENSDLPGLRFVHGGAIVS-GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC 183 (554)
Q Consensus 105 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 183 (554)
..|..-+..+.++|++......|+..+.. .+.....+|...+......|-++-++.++++..+.++..-+..|..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34555566666777777777777766544 23333446666666666667777788888777776666677777778888
Q ss_pred CChhhHHHHHHHHHHC------CCCCChhhHHHHHHHcccCCccchh---hHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 045069 184 GFWDKSLQLFDWMLRL------GKTPDEYTLVGLISGLWEPSLLSVG---QGIHGFCLKSSFDSYDYVSSVLVSMYARCN 254 (554)
Q Consensus 184 ~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 254 (554)
+++++|-+.+...... ..+.+...|..+....++..+.-.. ..+++.+...-...-...|.+|.+-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 8888887777766432 1233444454444444443333222 222222222222223467889999999999
Q ss_pred ChhhHHHHHhhcCC--CChhhHHHHHHHHHhc----------------C------CHHHHHHHHHHHHhCCC--------
Q 045069 255 CMNSAYHVFNSLFH--PDLVTWSALITGYSQQ----------------G------DYGKALYYFRKLNMQGK-------- 302 (554)
Q Consensus 255 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~----------------g------~~~~a~~~~~~m~~~~~-------- 302 (554)
.++.|.++|++... .++.-|..+.++|+.- | +++-.+..|+.+...+.
T Consensus 263 ~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred hhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999999988633 2333344444444321 1 12223333444333210
Q ss_pred ---CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc------hHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc
Q 045069 303 ---KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL------SVMVSSALVDMYSKCGYLGLGIQVFETMSERNII 373 (554)
Q Consensus 303 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 373 (554)
+-+..++..- .-...|+..+-...+.++.+. +.| -...|..+.+.|...|+++.|..+|++..+-+-.
T Consensus 343 RQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 1111112111 112234555556666666543 111 2356788899999999999999999998874443
Q ss_pred h-------HHHHHHHHHcCCChHHHHHHHHHHHHcCC----------CC-------CHHHHHHHHHHHhcCCchHHHHHH
Q 045069 374 T-------YNSVILGLGLHGFTYQAFEFFRDIIEKGL----------NP-------DESTFSALLCACCHGGLVNDGREI 429 (554)
Q Consensus 374 ~-------~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----------~p-------~~~~~~~ll~~~~~~~~~~~a~~~ 429 (554)
+ |..-...-.++.+++.|+++.++.....- .| +...|..+++.-...|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 3 44444445567889999998888764211 11 122355666666677888889999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCChhhHHHHHHHHHh---cCChHHHHHHHHHHH
Q 045069 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PVDPAVSGALLSCCHI---YGNSDLAEIVAHQLF 502 (554)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~ 502 (554)
++++.+- .+. ++.+.-..+..+....-++++.+++++-.. +.-...|+..+.-+.+ ....+.|..+|++++
T Consensus 500 YdriidL-ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL 577 (835)
T KOG2047|consen 500 YDRIIDL-RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQAL 577 (835)
T ss_pred HHHHHHH-hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 9999883 433 333333444556677889999999998542 3345567766655543 347899999999999
Q ss_pred hcCCCCc--hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 503 ENDPRKG--AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 503 ~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+.-|+.. ++|...+..-.+.|.-..|.++++++..
T Consensus 578 ~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 578 DGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred hcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9876433 4555556666678999999999998654
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.29 E-value=8.4e-10 Score=98.33 Aligned_cols=199 Identities=16% Similarity=0.087 Sum_probs=107.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDM 350 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (554)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.. +.+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~------- 101 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDV------- 101 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHH-------
Confidence 4556667777777777777777777766542 2223344444555555555555555555554443 122233
Q ss_pred HHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHH
Q 045069 351 YSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREI 429 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 429 (554)
+..+...+...|++++|.+.+++..+....| ....+..+...+...|++++|...
T Consensus 102 ------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 102 ------------------------LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred ------------------------HHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444455555555555555555422111 223444455555666666666666
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+++..+. .+.+...+..+...+...|++++|.+.+++.. .+.++..+..+...+...|+.+.|..+.+.+.+.
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6665552 23334455566666666666666666665542 1334444555555566666666666666655444
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.28 E-value=6.5e-08 Score=92.49 Aligned_cols=265 Identities=14% Similarity=0.144 Sum_probs=180.3
Q ss_pred HHHHHhcCChhhHHHHHhhcCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcch
Q 045069 247 VSMYARCNCMNSAYHVFNSLFHPDLV--TWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324 (554)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 324 (554)
+.+......|.+|+.+++.+...++. -|..+.+.|...|+++.|.++|-+.- .++-.|..|.+.|+++.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 44455667888888888888554443 46777888999999999999986532 34556778889999998
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC
Q 045069 325 GAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN 404 (554)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~ 404 (554)
|.++-.+. .|.+..+..|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+++.++- .
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----H 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----C
Confidence 88876554 34456667777777778889999999999988888875 467888999999888887663 3
Q ss_pred CCH--HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCChhhH
Q 045069 405 PDE--STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PVDPAVS 478 (554)
Q Consensus 405 p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~ 478 (554)
|+. .|...+..-+...|+...|..-|-+..+ |.+-+..|...+.|++|.++-+.-.. +.-...|
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 332 3666777788889999999887766643 45666777778888888877665321 0000111
Q ss_pred H------HHHHHH-------------HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 479 G------ALLSCC-------------HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 479 ~------~l~~~~-------------~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
. ..+..+ +..+-++-|..+.+-..+ ...+.+...++..+...|++++|-+.+-+.++.+
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 0 111112 233344444444433333 3345666777778889999999988888777665
Q ss_pred CccCC
Q 045069 540 LRKEA 544 (554)
Q Consensus 540 ~~~~~ 544 (554)
.-+-.
T Consensus 1026 tynit 1030 (1636)
T KOG3616|consen 1026 TYNIT 1030 (1636)
T ss_pred cccch
Confidence 54433
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=6.7e-10 Score=91.11 Aligned_cols=163 Identities=16% Similarity=0.044 Sum_probs=131.1
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
+...|..+|.+.|++..|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+-|++..+ --+-+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 344566778888888888888888888 456554 788888888888888888888888876 244457778888888
Q ss_pred HHhcCChHHHHHHHHhCCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHH
Q 045069 453 LGLAGNLEEAYSFIWSLPKP----VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 528 (554)
+|..|++++|...|++.... ....+|..+..+..+.|+.+.|...+++.++.+|+.+.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88888899998888886542 34567788888888889999999999999999998888888888888889999999
Q ss_pred HHHHHHHhhcCC
Q 045069 529 MKLRDDIVDNGL 540 (554)
Q Consensus 529 ~~~~~~~~~~~~ 540 (554)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 888888766554
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.27 E-value=5.1e-09 Score=99.83 Aligned_cols=238 Identities=13% Similarity=0.126 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhcC----------CCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC
Q 045069 242 VSSVLVSMYARCNCMNSAYHVFNSLF----------HPDLVT-WSALITGYSQQGDYGKALYYFRKLNMQ-----G-KKA 304 (554)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~----------~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~-----~-~~~ 304 (554)
+...|...|...|+++.|+.+++... .+...+ .+.+...|...+++++|..+|+++..- | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 33445556666666666666555441 122222 233556777788888888888877542 2 112
Q ss_pred C-HHHHHHHHHHHhccCCcchhHHHHHHHHHh-----c-CCch-HHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHH
Q 045069 305 D-PVLIASVLAAAAKSANVWPGAVIHGYVIQH-----G-FELS-VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYN 376 (554)
Q Consensus 305 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 376 (554)
. ..++..|..+|.+.|++++|...++...+- + ..|. ...++.+...++..+++++|..+++..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a--------- 351 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA--------- 351 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH---------
Confidence 2 235666666788888888888777765431 1 1111 122344445555555555555554421
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHh----C-CCC-ChhHHHHH
Q 045069 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEY----G-IQA-KTEHYIYM 449 (554)
Q Consensus 377 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l 449 (554)
.+++...... ..|. ..+++.|...|.+.|++++|.++++++.... + ..+ ....++.+
T Consensus 352 ---------------l~i~~~~~g~-~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 352 ---------------LKIYLDAPGE-DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ---------------HHHHHhhccc-cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 1111111000 1111 1256667777777777777777777665531 1 111 13445666
Q ss_pred HHHHHhcCChHHHHHHHHhCC---------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 450 VKLLGLAGNLEEAYSFIWSLP---------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...|.+.++..+|.++|.+.. .+....+|..|+..|...|+++.|+++.+.+...
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 667777777777777666532 1233456677777788888888888877776643
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=5.5e-10 Score=111.70 Aligned_cols=211 Identities=10% Similarity=0.055 Sum_probs=163.9
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHHHHHHH---------ccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCC
Q 045069 320 ANVWPGAVIHGYVIQHGFELSVMVSSALVDMYS---------KCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGF 387 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 387 (554)
++.+.|...+++..+.. +.+...|..+..+|. ..+++++|...+++..+ | +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34578888899888765 234455655555443 23457899999998774 3 45677888888899999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSF 465 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 465 (554)
+++|...+++..+ ..|+ ...+..+...+...|++++|...+++..+ +.|+ ...+..++..+...|++++|+..
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 5566 44788888899999999999999999977 3454 33334445557778999999999
Q ss_pred HHhCCC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 466 IWSLPK--PV-DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 466 ~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+++... +| ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 988642 33 45567778888899999999999999998888888888888988888888 4888888887653
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=2.7e-10 Score=97.91 Aligned_cols=225 Identities=9% Similarity=-0.036 Sum_probs=156.1
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchH-HHHHHHHHcCCC
Q 045069 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITY-NSVILGLGLHGF 387 (554)
Q Consensus 311 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~ 387 (554)
.+-.+|.+.|-+.+|++.++...+. .|-+.||-.|-++|.+..+++.|+.+|.+..+ |-.+|| ..+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 3455566666666666666555544 34455666666777777777777777776553 444444 335556666677
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (554)
.++|.++|+...+.. ..+......+...|.-.++++-|+++++++.+ .|+ .++..|+.+.-+|.-.++++-++.-|.
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777777631 22334555566666677777777777777777 354 345667777777777777777777666
Q ss_pred hCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 468 SLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 468 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+... ..-...|..+......-||+..|.+.|+-++..+|++...+..|+-.-.+.|++++|..+++......+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 6431 223567778888888889999999999999999999999999998888899999999999998876544
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=3e-10 Score=97.61 Aligned_cols=236 Identities=11% Similarity=0.042 Sum_probs=191.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc
Q 045069 275 SALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC 354 (554)
Q Consensus 275 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (554)
+.+.++|.+.|-+.+|...++..... .|-+.||..+-.+|.+..++..|+.++.+-.+.- +-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56788888888888888888877665 5666788888888888888888888888877652 44555555677888888
Q ss_pred CChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHH
Q 045069 355 GYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 355 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
++.++|.++|+...+ .++.....+..+|.-.++++.|+.+|+++.+.|+. ++.-|..+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998775 45566667777888899999999999999999865 66778888888999999999999999
Q ss_pred HhHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 432 RMTEEYGIQAK--TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 432 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+.... --.|+ ..+|..+.......|++.-|.+-|+-.. .+.....++.|...-.+.|++++|..+++.+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 88774 44454 5678888888899999999999998764 3556778899988889999999999999999999887
Q ss_pred CchhHHHH
Q 045069 508 KGAYKVML 515 (554)
Q Consensus 508 ~~~~~~~l 515 (554)
-.+....+
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 66554444
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=4.1e-08 Score=91.21 Aligned_cols=236 Identities=11% Similarity=0.041 Sum_probs=185.0
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHH
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVI 379 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 379 (554)
.-+.........-|...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+ | ...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 3445555566667778899999999999988876 56666666667778888876665555555553 3 457899999
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN 458 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (554)
.-|...|++.+|.++|.+... +.|.- ..|..+...+.-.|.-++|...+....+- ++-...-+-.+.--|.+.++
T Consensus 320 ~YYl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhcc
Confidence 999999999999999999876 55654 47999999999999999999999888762 34444444556667889999
Q ss_pred hHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----C---CCCchhHHHHHHHHHccCChhHHH
Q 045069 459 LEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN----D---PRKGAYKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 459 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~A~ 529 (554)
.+-|.++|.+.. .|.|+...+-+.......+.+.+|..+|+..++. . +.....+..|+.+|.+.+++++|+
T Consensus 396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 999999998864 4778888899988888999999999999998854 2 223456889999999999999999
Q ss_pred HHHHHHhhcCCccC
Q 045069 530 KLRDDIVDNGLRKE 543 (554)
Q Consensus 530 ~~~~~~~~~~~~~~ 543 (554)
..+++.+....+..
T Consensus 476 ~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 476 DYYQKALLLSPKDA 489 (611)
T ss_pred HHHHHHHHcCCCch
Confidence 99999988765443
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=1.1e-08 Score=98.94 Aligned_cols=255 Identities=13% Similarity=0.047 Sum_probs=155.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc-----C
Q 045069 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC-----G 355 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g 355 (554)
+...|++++|++.+.+-... +......+......+.+.|+.++|..++..+++.+ +.+..-|..+..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 34445555555554432211 11222233333444445555555555555555444 23333333333333111 1
Q ss_pred ChHHHHHHHhccCC--CCcchHHHHHHHHHcCCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 356 YLGLGIQVFETMSE--RNIITYNSVILGLGLHGFT-YQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTR 432 (554)
Q Consensus 356 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 432 (554)
..+...++|+++.. |.......+.-.+.....+ ..+..++..+..+|+++ +|..+-..|......+-..+++..
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred cHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHH
Confidence 34444555554442 2222222222222221122 34556677777887654 344444445555555555566665
Q ss_pred hHHHh-------------CCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCChhhHHHHHHHHHhcCChHHHH
Q 045069 433 MTEEY-------------GIQAKT--EHYIYMVKLLGLAGNLEEAYSFIWSLP-K-PVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 433 ~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
..... .-+|+. .++..+.+.|...|++++|++++++.. . |..+..|..-+..+-..|++++|.
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 54421 123443 355677888999999999999999864 3 445788888899999999999999
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 496 IVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+.++.+.++++.|..+..-.+..+.+.|+.++|.+++..+.+.+.
T Consensus 249 ~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 249 EAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999999999999988776
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=1.1e-08 Score=93.65 Aligned_cols=216 Identities=14% Similarity=0.067 Sum_probs=147.8
Q ss_pred CCcchhHHHHHHHHHhc-CCc--hHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHH
Q 045069 320 ANVWPGAVIHGYVIQHG-FEL--SVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
+..+.+...+.++.... ..| ....|..+...|...|+.++|...|++..+ | +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555666665432 122 245677778888899999999998887764 3 45688888889999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 045069 394 FFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP 472 (554)
Q Consensus 394 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 472 (554)
.|++..+ +.|+ ..++..+..++...|++++|.+.|++..+. .|+..........+...++.++|...+.+....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999988 5665 457777888888899999999999998763 444332222233345567899999998664322
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHH-------hcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLF-------ENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.++..|. ........|+...+ +.++.+. +..|..+..|..++.++.+.|++++|+..|++.++.++..
T Consensus 195 ~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 2222332 22333345555443 2444443 3356667889999999999999999999999998876543
No 80
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=6.4e-07 Score=78.50 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=136.7
Q ss_pred CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCC-------ChHHHHH
Q 045069 321 NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHG-------FTYQAFE 393 (554)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~ 393 (554)
+-+.|++++--+.+. .| ..--.|+-.|.+.++..+|..+.+.+...++.-|-.-.-.++..| ...-|.+
T Consensus 269 ngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQ 344 (557)
T ss_pred CCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 345555555444432 12 222345566889999999999988876544433332222233333 3455666
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 045069 394 FFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP 472 (554)
Q Consensus 394 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 472 (554)
.|+..-+.+..-|.. --.++..++.-...+++.+..++.+.. +-...|... -.+.++++..|.+.+|.++|-++..+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 666555554443332 233444555556678888888888877 334444443 45789999999999999999887632
Q ss_pred --CChhhH-HHHHHHHHhcCChHHHHHHHHHHHhcC-CC-CchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 473 --VDPAVS-GALLSCCHIYGNSDLAEIVAHQLFEND-PR-KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 473 --~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
.+..+| ..|.++|...+..+.|-.++ ++.+ |. .......++.-+.+.|.+--|.+.|+.+...++.|+-
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 344444 55677888899988776554 4443 43 3345566778889999999999999999877765543
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.2e-07 Score=86.86 Aligned_cols=412 Identities=13% Similarity=0.063 Sum_probs=243.9
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchH--HHHHHHHHhCCChhh
Q 045069 111 TRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLC--NSMISGFAHCGFWDK 188 (554)
Q Consensus 111 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~ 188 (554)
++.+...|++++|.+....++..+ +-+...+..=+-+.+..+++++|+.+.+.-........ -.=..+..+.+..|+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 445667889999999999999877 33555666666678899999999977665443111111 122344557899999
Q ss_pred HHHHHHHHHHCCCCCChh-hHHHHHHHcccCCccchhhHHHHHHHHhcCCC-chhHHHHHHHHHHhcCChhhHHHHHhhc
Q 045069 189 SLQLFDWMLRLGKTPDEY-TLVGLISGLWEPSLLSVGQGIHGFCLKSSFDS-YDYVSSVLVSMYARCNCMNSAYHVFNSL 266 (554)
Q Consensus 189 a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 266 (554)
|+..++ |..++.. +...-...|.+.+++++|..+|+.+.+++.+. +...-..++.+-. .-.+. +.+..
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v 167 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSV 167 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhc
Confidence 999988 3344433 55555567789999999999999998887543 2222222222111 11111 34444
Q ss_pred CCCChhhHHH---HHHHHHhcCCHHHHHHHHHHHHhCC-------CCC------CHH-HHHHHHHHHhccCCcchhHHHH
Q 045069 267 FHPDLVTWSA---LITGYSQQGDYGKALYYFRKLNMQG-------KKA------DPV-LIASVLAAAAKSANVWPGAVIH 329 (554)
Q Consensus 267 ~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~m~~~~-------~~~------~~~-~~~~l~~~~~~~g~~~~a~~~~ 329 (554)
+.....+|.. ....+...|++.+|+++++...+.+ -.- ... .-..+.-++...|+.++|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3333334443 3456778999999999999883211 111 111 1223445667789999999999
Q ss_pred HHHHHhcCCchH---HHHHHHHHHHHccCChH-HHHHHHhccCC--------------C-CcchHHHHHHHHHcCCChHH
Q 045069 330 GYVIQHGFELSV---MVSSALVDMYSKCGYLG-LGIQVFETMSE--------------R-NIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 330 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~-~A~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~ 390 (554)
...++......+ ...|.|+.+-....-++ .++..++.... . .+..-+.++..|.. .-+.
T Consensus 248 ~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q 325 (652)
T KOG2376|consen 248 VDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQ 325 (652)
T ss_pred HHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHH
Confidence 999888743221 22233332221111111 22223332221 1 11111223333322 2233
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhc--CCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCH--GGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (554)
+.++..... +..|.. .+..++..+.+ ...+..+..++....+ +.+-. ..+.-.+++.....|+++.|++++.
T Consensus 326 ~r~~~a~lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 326 VRELSASLP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHhCC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 333322221 123332 34444444332 2357778888888766 33333 4566677888889999999999998
Q ss_pred --------hCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCC---chhHHHHHHHHHccCChhHHHHH
Q 045069 468 --------SLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN----DPRK---GAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 468 --------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
.+.. ...+.+...+...+.+.++.+.|..++..++.- .+.. ...+..++..-.+.|+-++|..+
T Consensus 401 ~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred HHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 3332 455666677777788888888888888877664 2222 23444556666788999999999
Q ss_pred HHHHhhcCC
Q 045069 532 RDDIVDNGL 540 (554)
Q Consensus 532 ~~~~~~~~~ 540 (554)
++++.+.+.
T Consensus 481 leel~k~n~ 489 (652)
T KOG2376|consen 481 LEELVKFNP 489 (652)
T ss_pred HHHHHHhCC
Confidence 999988543
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=1.7e-06 Score=82.10 Aligned_cols=171 Identities=11% Similarity=0.021 Sum_probs=107.3
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcC
Q 045069 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ---RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQ 99 (554)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 99 (554)
..+.+.+.+ +.+-.+.+.....-.+...|+-++|......... .+.+.|..+.-.+-...++++|+..|......+
T Consensus 27 LK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 27 LKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE 105 (700)
T ss_pred HHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 333444443 3333444555555566677888888887776553 355778887777777888999999999888753
Q ss_pred CCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC-----CCcchHH
Q 045069 100 LKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-----PDLVLCN 174 (554)
Q Consensus 100 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 174 (554)
+-|...+.-+.-.-++.|+++........+.+..+ .....|..+..++.-.|+...|..+++...+ |+...|.
T Consensus 106 -~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 106 -KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred -CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 22455666666666677787777777766666532 2445666777777777888887777765543 3333332
Q ss_pred HHH------HHHHhCCChhhHHHHHHHH
Q 045069 175 SMI------SGFAHCGFWDKSLQLFDWM 196 (554)
Q Consensus 175 ~li------~~~~~~~~~~~a~~~~~~m 196 (554)
... ....+.|..+.|++.+..-
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 221 3345566666666666543
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.6e-07 Score=81.70 Aligned_cols=392 Identities=13% Similarity=0.024 Sum_probs=254.3
Q ss_pred CHhHHHHHHHHHHcCCCHhHHHHhhcccCCC-CcchHHHHHHHHHhCCC--hhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045069 138 DSITSSALVTAYSKLSLIDEAIKVFDGVSDP-DLVLCNSMISGFAHCGF--WDKSLQLFDWMLRLGKTPDEYTLVGLISG 214 (554)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 214 (554)
+...-...+.+|...++-+.|...+.+.++. ...--|.|+.-+.+.|- .+.++..-+-+++. +.-... |.+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p~aL~~----i~~ 169 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--PMALQV----IEA 169 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--chHHHH----HHH
Confidence 4555667788888899999999999888873 33334444444444432 22222221112221 000000 101
Q ss_pred cccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhc--CChhhHHHHHhhc-----CCCChhhHHHHHHHHHhcCCH
Q 045069 215 LWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARC--NCMNSAYHVFNSL-----FHPDLVTWSALITGYSQQGDY 287 (554)
Q Consensus 215 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~ 287 (554)
..+.+ +..+..--..|.....+|........+.+++.+ ++-..|...+-.+ .+.|+.....+.+.+...|+.
T Consensus 170 ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn 248 (564)
T KOG1174|consen 170 LLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDY 248 (564)
T ss_pred HHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCc
Confidence 10000 000111111222333444444455555555443 3333333333222 456888899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhc
Q 045069 288 GKALYYFRKLNMQGKKADPVL-IASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFET 366 (554)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 366 (554)
++|+..|++.... .|+..+ .....-.+...|+.+....+...+.... ..+...|-.-........+++.|+.+-++
T Consensus 249 ~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 249 FQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999987644 343332 1112223457788888888887776543 22333333334445566789999998887
Q ss_pred cCCC---CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC
Q 045069 367 MSER---NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK 442 (554)
Q Consensus 367 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 442 (554)
..+. ++..|-.-...+...|+.++|.-.|+.... +.| +...|..|+.+|...|++.+|...-....+. ++.+
T Consensus 326 ~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~s 401 (564)
T KOG1174|consen 326 CIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNS 401 (564)
T ss_pred HhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcc
Confidence 7753 444454445678889999999999999887 665 4569999999999999999999888877763 5566
Q ss_pred hhHHHHHH-HHHH-hcCChHHHHHHHHhCC-C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 443 TEHYIYMV-KLLG-LAGNLEEAYSFIWSLP-K-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 443 ~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
..+...+. ..+. ....-++|.+++++.. . |.-......+...|...|..+.++.++++.+...|+ ......|+++
T Consensus 402 A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~ 480 (564)
T KOG1174|consen 402 ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDI 480 (564)
T ss_pred hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHH
Confidence 66666663 3333 2334578999998854 3 444566777778899999999999999999998875 5788899999
Q ss_pred HHccCChhHHHHHHHHHhhcCCccCC
Q 045069 519 YAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 519 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
+...+.+++|.+.|..+++.++....
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhcCccchH
Confidence 99999999999999999988776543
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=4.1e-08 Score=80.87 Aligned_cols=170 Identities=15% Similarity=0.089 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALLC 415 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~ 415 (554)
+..++..+...|.+.|..+.|.+.|+...+ .+....|....-+|..|++++|...|++.......|.. .||..+..
T Consensus 68 ~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 68 YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 344455555555555666666555555442 23344555555566666666666666666654333332 25555655
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
+..+.|+.+.|...|++..+. .+........+.+...+.|++..|..+++.... .+....+...+..-...||.+.
T Consensus 148 Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH
Confidence 556666666666666666552 222344555566666666666666666655432 3455555555555566666666
Q ss_pred HHHHHHHHHhcCCCCchh
Q 045069 494 AEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~ 511 (554)
+-++=.++.+..|.+...
T Consensus 226 a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 226 AQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHHHhCCCcHHH
Confidence 666666666666665543
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=3.7e-06 Score=81.90 Aligned_cols=30 Identities=3% Similarity=0.049 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.++..|++.+....+|+.|-+.++++.++-
T Consensus 1331 ~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1331 RLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred HHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 578889999999999999999999998764
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.10 E-value=5.3e-07 Score=86.46 Aligned_cols=219 Identities=13% Similarity=0.124 Sum_probs=119.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 279 TGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
..+...|+++.|...|-+... ....+.+......+.+|..+++.+.++.. ...-|..+.+-|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 344455566666555543321 12334455566667777777776665532 2334556666677777777
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC
Q 045069 359 LGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438 (554)
Q Consensus 359 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 438 (554)
.|.++|-+.. .++-.|..|.+.|+++.|.++-.+... .......|..-..-+-+.|++.+|.++|-.+..
T Consensus 783 ~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~--- 852 (1636)
T KOG3616|consen 783 IAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE--- 852 (1636)
T ss_pred HHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC---
Confidence 7777776532 345556667777777777766555422 222333454444555666777777666644421
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 439 IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
|+ .-+..|-+.|..+..+++..+-....-..+...+..-+-..|+.+.|+..|-++-+ +..-.+.
T Consensus 853 --p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnm 917 (1636)
T KOG3616|consen 853 --PD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNM 917 (1636)
T ss_pred --ch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHH
Confidence 32 23456666666666666666544333344555555556666666666655544321 2222344
Q ss_pred HHccCChhHHHHHHH
Q 045069 519 YAEDGRWDDVMKLRD 533 (554)
Q Consensus 519 ~~~~g~~~~A~~~~~ 533 (554)
|...+.|++|.++-+
T Consensus 918 yk~s~lw~dayriak 932 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAK 932 (1636)
T ss_pred hhhhhhHHHHHHHHh
Confidence 555555555554443
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.09 E-value=1.7e-08 Score=90.90 Aligned_cols=225 Identities=13% Similarity=0.115 Sum_probs=142.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCC-chHHHHHHHHHHHHcc
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFE-LSVMVSSALVDMYSKC 354 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 354 (554)
.+.+++...|+++.++ .++.... .|.......+...+...++-+.+..-+++....... .+.........++...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3455566666655433 2232222 444444444444333323333333333332222222 2333333344567778
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcCCchHHHHHHH
Q 045069 355 GYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC----CHGGLVNDGREIF 430 (554)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~ 430 (554)
|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++ ...+.+.+|..+|
T Consensus 116 ~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 116 GDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp CHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhHHHHHHHH
Confidence 9999999888865 4566667788889999999999999999987 445543 33333333 2345789999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNS-DLAEIVAHQLFENDPR 507 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~p~ 507 (554)
+++.+ ..++++.+.+.++.+....|++++|.+++.+.. .+.++.++..++.+....|+. +.+.+.+.++....|+
T Consensus 191 ~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 191 EELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 99877 467888888999999999999999999988853 366778888888887888877 6788889998888888
Q ss_pred Cchh
Q 045069 508 KGAY 511 (554)
Q Consensus 508 ~~~~ 511 (554)
.+..
T Consensus 269 h~~~ 272 (290)
T PF04733_consen 269 HPLV 272 (290)
T ss_dssp SHHH
T ss_pred ChHH
Confidence 6653
No 88
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.09 E-value=5.3e-07 Score=87.16 Aligned_cols=447 Identities=12% Similarity=0.009 Sum_probs=244.4
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCC
Q 045069 25 LHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQ---RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLK 101 (554)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 101 (554)
....+....+..++..|..|.-++...|+++.+.+.|++... .....|+.+-..|...|.-..|+.+++.-......
T Consensus 310 ~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 310 LLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 333444445567888999998899999999999999988653 24466888888888888888899888876554323
Q ss_pred CCcc-cHHHHHHHhh-cCCChhhHHHHHHHHHHhc----CCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHH
Q 045069 102 PDNF-TYACITRACS-ENSDLPGLRFVHGGAIVSG----LGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNS 175 (554)
Q Consensus 102 p~~~-~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 175 (554)
|+.. .+...-..|. +.+..+++..+.....+.. -...+..|..+.-+|...-. +++..+-
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~se-- 455 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKSE-- 455 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChHH--
Confidence 4333 3333333444 4456666666655555421 11223333333333321100 0000000
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCC-CCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 045069 176 MISGFAHCGFWDKSLQLFDWMLRLGK-TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN 254 (554)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 254 (554)
+.....++++.+++..+.+. .|+...| +---++..++.+.|....++..+.+...+...|..|.-.+.-.+
T Consensus 456 ------R~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 456 ------RDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred ------HHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 00012234444444443321 1222222 12223444555555555555555544555555555555555556
Q ss_pred ChhhHHHHHhhcCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhccCCcchhHHHH
Q 045069 255 CMNSAYHVFNSLFHPDLVTW---SALITGYSQQGDYGKALYYFRKLNMQ--GKKADPVLIASVLAAAAKSANVWPGAVIH 329 (554)
Q Consensus 255 ~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 329 (554)
++.+|+.+.+...+.....| ..-+..-..-++.++++.....+..- ...+-..+ ++-....+..
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk 596 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLK 596 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhh
Confidence 66666655554422111111 11122222344555555444443321 00000000 0000011111
Q ss_pred HHH---HHhcCCchHHHHHHHHHHHH---ccCChHHHHHHHhccCCCCc------chHHHHHHHHHcCCChHHHHHHHHH
Q 045069 330 GYV---IQHGFELSVMVSSALVDMYS---KCGYLGLGIQVFETMSERNI------ITYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 330 ~~~---~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
..+ .. .....+.++..+..... +.-..+..+..+.....|+. ..|......+.+.+..++|...+.+
T Consensus 597 ~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~E 675 (799)
T KOG4162|consen 597 AGLHLALS-QPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLE 675 (799)
T ss_pred cccccCcc-cccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 110 00 01111222222221111 11111122122222222332 2455666778888999999988888
Q ss_pred HHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHHhCC--C
Q 045069 398 IIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYS--FIWSLP--K 471 (554)
Q Consensus 398 m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~--~ 471 (554)
... +.|-. ..|......+...|...+|.+.|..... +.|+ +....++..++.+.|+..-|.. ++..+. .
T Consensus 676 a~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 676 ASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 877 44544 4677777788889999999999988855 5565 7788999999999998777776 777764 4
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+.++..|..++..+.+.|+.+.|-+.|..+.+..+.+|.
T Consensus 751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 778999999999999999999999999999999766553
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.06 E-value=2.3e-07 Score=80.85 Aligned_cols=295 Identities=12% Similarity=0.025 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHh
Q 045069 242 VSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALIT---GYSQQGDYGKALYYFRKLNMQGKKADPVLIA-SVLAAAA 317 (554)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~ 317 (554)
-.-.+...+.-.|++..|+..|...++-|+..|.++.+ .|...|+..-|+.-+.+..+. +||-..-. .--..+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 33445566667778888888888887777766666543 577777777777777766654 56643221 1223556
Q ss_pred ccCCcchhHHHHHHHHHhcCC------------chHHH--HHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHH
Q 045069 318 KSANVWPGAVIHGYVIQHGFE------------LSVMV--SSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVIL 380 (554)
Q Consensus 318 ~~g~~~~a~~~~~~~~~~~~~------------~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 380 (554)
+.|.++.|..-|+..++.... +.... ....+..+...|+...|+.....+.+ -|...|..-..
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 778888888888877765421 11111 12234455667888888888877764 46667777788
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhH----HHH---HH---
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEH----YIY---MV--- 450 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~---l~--- 450 (554)
+|...|++..|+.=++...+.. ..+..++.-+-..+...|+.+.++...++..+ +.||... |.. +.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHH
Confidence 8888999888888777766632 22344555566677788888888777777744 6676432 211 11
Q ss_pred ---HHHHhcCChHHHHHHHHhC-CCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc
Q 045069 451 ---KLLGLAGNLEEAYSFIWSL-PKPVD-----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 451 ---~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 521 (554)
....+.++|.++++-.+.. ...|. ...+..+..++...+++.+|++...++++.+|++..++..-+.+|.-
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 1234567777777766653 33333 23455666777888999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHhhcCCcc
Q 045069 522 DGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 522 ~g~~~~A~~~~~~~~~~~~~~ 542 (554)
...|++|+.-|+++.+.+...
T Consensus 354 dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHHHhcCccc
Confidence 999999999999988765443
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=8.3e-09 Score=96.04 Aligned_cols=218 Identities=13% Similarity=0.083 Sum_probs=173.8
Q ss_pred HhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC---CcchHHHHHHHHHcCCChHHHH
Q 045069 316 AAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER---NIITYNSVILGLGLHGFTYQAF 392 (554)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 392 (554)
+.+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+.+..+. |....-.|.-.|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356778888888888888776 667888888888888888888899888887753 4456666777888889889999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-----------HHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 045069 393 EFFRDIIEKGLNPDESTFSALL-----------CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
+.+++-+... |.. ..+. ..+..........++|-++....+..+|+.+...|.-.|.-.|.+++
T Consensus 374 ~~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999887632 211 1111 11222233445566666665544666888999999999999999999
Q ss_pred HHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 462 AYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 462 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
|+.-|+.+. .|.|...|+.|...++...+.++|+..|.+++++.|.-..+.+.|+-.|...|.|+||.+.|-+++...
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 999999864 477899999999999999999999999999999999999999999999999999999999999887543
No 91
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5e-07 Score=83.78 Aligned_cols=445 Identities=13% Similarity=0.017 Sum_probs=232.6
Q ss_pred HHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCC-cccHHHHHHHhhcCCChh
Q 045069 46 RLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPD-NFTYACITRACSENSDLP 121 (554)
Q Consensus 46 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~ 121 (554)
.+.+..|+++.|+..|.+.. ++|-..|+.-..+|+..|++++|++=-.+-.+ +.|+ ...|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 34566788888888887644 55677788888888888888888776666555 3454 346777788888888888
Q ss_pred hHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHH-HhhcccCCCCcchHHHHH-----HHHHhCCChhhHHHHHHH
Q 045069 122 GLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAI-KVFDGVSDPDLVLCNSMI-----SGFAHCGFWDKSLQLFDW 195 (554)
Q Consensus 122 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~ 195 (554)
+|..-|.+-++... .+...++-+..++ ..+.+. +.| .++..|..+. +.+.....+...++.+..
T Consensus 88 eA~~ay~~GL~~d~-~n~~L~~gl~~a~----~~~~~~~~~~-----~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKDP-SNKQLKTGLAQAY----LEDYAADQLF-----TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHhhcCC-chHHHHHhHHHhh----hHHHHhhhhc-----cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 88888877776542 2455556666655 111111 111 1111111111 111111111111111100
Q ss_pred HHHCCCCCChh-h---HHHHHHHcccCCccchhhHHHHHHHHhc-------CCCchhHHHHHHHHHHhcCC-hhhHHHHH
Q 045069 196 MLRLGKTPDEY-T---LVGLISGLWEPSLLSVGQGIHGFCLKSS-------FDSYDYVSSVLVSMYARCNC-MNSAYHVF 263 (554)
Q Consensus 196 m~~~~~~p~~~-~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 263 (554)
.|+.. . ...++.+.......+.- .....+ ..|...- .......++ .++..
T Consensus 158 ------~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~----~~~~~~~~d~~ee~~--- 219 (539)
T KOG0548|consen 158 ------NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQE----HNGFPIIEDNTEERR--- 219 (539)
T ss_pred ------CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCccccc----CCCCCccchhHHHHH---
Confidence 01000 0 00000000000000000 000000 0000000 000000000 00000
Q ss_pred hhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCch---
Q 045069 264 NSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELS--- 340 (554)
Q Consensus 264 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--- 340 (554)
...-..-...+..+..+..++..|.+-+....+.. -+..-++....++...|.+...........+.|...-
T Consensus 220 ---~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~ 294 (539)
T KOG0548|consen 220 ---VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADY 294 (539)
T ss_pred ---HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHH
Confidence 00011123345555556666777777766665543 3333344444566666666555555555444442110
Q ss_pred ---HHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 045069 341 ---VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCA 416 (554)
Q Consensus 341 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~ 416 (554)
...+..+..+|.+.++.+.|+..|.+...+... -....+....+++....+...- +.|... -...-...
T Consensus 295 klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne 367 (539)
T KOG0548|consen 295 KLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNE 367 (539)
T ss_pred HHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHH
Confidence 111222344666677788888888764421111 1122233444555555444443 444432 12223566
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
+.+.|++..|...|.+++++ -|.|...|....-+|.+.|.+.+|++=.+... .++....|..-+.++....+++.|
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkA 445 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKA 445 (539)
T ss_pred HHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999998884 46678888888888999999988888766643 245556666666667777889999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
.+.|++.++.+|.+..+...+.+++..........++.++
T Consensus 446 leay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 446 LEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9999999999999888888887777654333333444433
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=3.7e-05 Score=76.91 Aligned_cols=472 Identities=12% Similarity=0.069 Sum_probs=278.6
Q ss_pred hHHHHHHHHHHhcCCchhHHHHhccCCC--CCcchHHH----HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHH
Q 045069 39 FYATKLVRLYALNNVLPSARILFDKTPQ--RSVFLWNS----IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITR 112 (554)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~----ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 112 (554)
+-+..+.+.+-+.|-...|++.+..+.. +.+..-+. -+-.|.-.-.++.+.+.++.|...+++.|..+.-.+..
T Consensus 607 yDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 607 YDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred ccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3367778888999999999988877651 11111110 12234445568899999999999988888888777777
Q ss_pred HhhcCCChhhHHHHHHHHHHh-----------cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--------------
Q 045069 113 ACSENSDLPGLRFVHGGAIVS-----------GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-------------- 167 (554)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------- 167 (554)
-|...=-.+...++|+..... ++.-|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 776665566666666665432 3455777777889999999999998887754320
Q ss_pred -----------------CCcchH--H----HHHHHHHh------------------------------------------
Q 045069 168 -----------------PDLVLC--N----SMISGFAH------------------------------------------ 182 (554)
Q Consensus 168 -----------------~~~~~~--~----~li~~~~~------------------------------------------ 182 (554)
+|.+.| . -.|..|.+
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 111111 0 01222221
Q ss_pred ----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccch----------hhHHHHHHHHhcC------------
Q 045069 183 ----CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSV----------GQGIHGFCLKSSF------------ 236 (554)
Q Consensus 183 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~----------a~~~~~~~~~~~~------------ 236 (554)
.++..--+-+++.....| ..|..|++.+...|...++-.+ ..-+-..+.++.+
T Consensus 847 EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 122222223334444445 3477788888777765443211 1112222222211
Q ss_pred -------CCchhHHHHHHHHHHhcCChhhHHHHHhhc-----------------CCCChhhHHHHHHHHHhcCCHHHHHH
Q 045069 237 -------DSYDYVSSVLVSMYARCNCMNSAYHVFNSL-----------------FHPDLVTWSALITGYSQQGDYGKALY 292 (554)
Q Consensus 237 -------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------------~~~~~~~~~~l~~~~~~~g~~~~a~~ 292 (554)
......|..+.+.+.+..+.+--.+++.+- ...|+..-+.-++++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 112234445555555556655555544221 11455666667788888888888888
Q ss_pred HHHHHHhCCCC--CCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcC------CchHHHHHHHHHHHH------------
Q 045069 293 YFRKLNMQGKK--ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF------ELSVMVSSALVDMYS------------ 352 (554)
Q Consensus 293 ~~~~m~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~------------ 352 (554)
+++++.-..-. -+...-+.++-...+ .+..++.++.+++-..+. ..+...|......|-
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VL 1084 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVL 1084 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHH
Confidence 88887643211 111122222222222 122233333333222110 001111111111111
Q ss_pred --ccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 045069 353 --KCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 353 --~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 430 (554)
..+..+.|.++-++.. ....|..+..+-.+.|...+|++-|-+. .|+..|.-+++.+.+.|.+++..+++
T Consensus 1085 ie~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1085 IENIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HHHhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1233444444433333 3356888888888888888888766432 35678999999999999999999999
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
...+++ .-.|... ..|+-+|++.++..+..+++. .|+.........-|...+.++.|.-+|.. .+
T Consensus 1157 ~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vS 1221 (1666)
T KOG0985|consen 1157 LMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VS 1221 (1666)
T ss_pred HHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hh
Confidence 888776 6666655 568889999999988777663 46666777788888888888888877764 45
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHH
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
-+..|+..+...|+++.|...-+++
T Consensus 1222 N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1222 NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5667777777777777776655543
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.7e-07 Score=79.98 Aligned_cols=318 Identities=10% Similarity=0.001 Sum_probs=208.4
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHH-HHH
Q 045069 37 DPFYATKLVRLYALNNVLPSARILFDKTPQ--R-SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYAC-ITR 112 (554)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~ 112 (554)
...-+.+.+..+.+..++++|++++..-.+ | +....+.+...|-...++..|.+.++++... .|...-|.. -..
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 334466777778888899999998875442 2 5566777788888999999999999998874 455555543 234
Q ss_pred HhhcCCChhhHHHHHHHHHHhcCCCCHh--HHHHHHHHHHcCCCHhHHHHhhcccCC-CCcchHHHHHHHHHhCCChhhH
Q 045069 113 ACSENSDLPGLRFVHGGAIVSGLGRDSI--TSSALVTAYSKLSLIDEAIKVFDGVSD-PDLVLCNSMISGFAHCGFWDKS 189 (554)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a 189 (554)
.+-+.+.+..|.++...|... |+.. +...-....-..+++..+..++++.+. .+..+.+.......+.|+++.|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 455778888999988877542 2211 111111223457888899999998884 6666666666667789999999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHH----HHHHHHHHhcCChhhHHHHHhh
Q 045069 190 LQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVS----SVLVSMYARCNCMNSAYHVFNS 265 (554)
Q Consensus 190 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~ 265 (554)
.+-|+...+-+--.....|+..+ +..+.++.+.|.+...+++++|+...+..- ...+++-.-.+-...+..
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S---- 238 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS---- 238 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH----
Confidence 99999887754444456676665 445778899999999999988865433210 000000000000000000
Q ss_pred cCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHH
Q 045069 266 LFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ-GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVS 344 (554)
Q Consensus 266 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 344 (554)
.-+..+|.-...+.+.|+++.|.+.+-.|..+ ....|++|...+.-.- ..+++....+-+.-+.+.+ +....|+
T Consensus 239 ---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETF 313 (459)
T KOG4340|consen 239 ---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETF 313 (459)
T ss_pred ---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHH
Confidence 01233455555677889999999988888543 2456777766543322 2455666666677777665 3556788
Q ss_pred HHHHHHHHccCChHHHHHHHhccCC
Q 045069 345 SALVDMYSKCGYLGLGIQVFETMSE 369 (554)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (554)
..++-.||+..-++.|-.++.+-..
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 8888899999999999988876543
No 94
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.98 E-value=1.9e-06 Score=82.15 Aligned_cols=259 Identities=12% Similarity=-0.013 Sum_probs=154.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK----SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (554)
...+...|++++|...+++..+.. +.+...+.. ...+.. .+....+.+.+.. .....+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 334567788888888888877653 222223332 222222 3334444444333 111112223444556677888
Q ss_pred cCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhcCCchHHHH
Q 045069 354 CGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPDE--STFSALLCACCHGGLVNDGR 427 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~ 427 (554)
.|++++|...+++..+ .+...+..+...+...|++++|...+++..+... .|+. ..|..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999999888763 3445677788888889999999999988877421 1232 24556777888899999999
Q ss_pred HHHHHhHHHhCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-Hh---C-CCCCChhhHHHHHHHHHhcCChHHHHHH
Q 045069 428 EIFTRMTEEYGIQAKTEHY-I--YMVKLLGLAGNLEEAYSF--I-WS---L-PKPVDPAVSGALLSCCHIYGNSDLAEIV 497 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~---~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 497 (554)
.++++........+..... + .++..+...|..+.+.++ + .. . ..............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9998875421111211111 1 223333334433322222 1 11 1 1111122223566667888999999999
Q ss_pred HHHHHhcC-C--------CCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 498 AHQLFEND-P--------RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 498 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
++.+.... . .........+.++...|++++|.+.+...+...
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 98876642 1 123455566677889999999999999987643
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.98 E-value=1.7e-08 Score=90.84 Aligned_cols=246 Identities=9% Similarity=0.018 Sum_probs=166.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 279 TGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
+-+.-.|++..++.-.+ ........+.....-+.+++...|+.+. .+.++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34556788888886555 2222222233445566778888887654 334443333 677777766666555545666
Q ss_pred HHHHHHhccC-CCCc---chH-HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHh
Q 045069 359 LGIQVFETMS-ERNI---ITY-NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 359 ~A~~~~~~~~-~~~~---~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 433 (554)
.+..-+++.. ++.. .++ ......+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776665544 3211 222 22334566789999999988642 45667778889999999999999999999
Q ss_pred HHHhCCCCChhHHHHHHHHHH----hcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 434 TEEYGIQAKTEHYIYMVKLLG----LAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 434 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
.+ ...|. +...++.++. -.+.+.+|..+|+++.. ++++.+++.+..++...|++++|+++++++.+.+|.
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 65 34443 3344444443 23479999999999854 567888888999999999999999999999999999
Q ss_pred CchhHHHHHHHHHccCCh-hHHHHHHHHHhhcC
Q 045069 508 KGAYKVMLSNTYAEDGRW-DDVMKLRDDIVDNG 539 (554)
Q Consensus 508 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 539 (554)
++.+...++-+....|+. +.+.+++.++....
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 999999999888888988 66788888887654
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.9e-06 Score=83.84 Aligned_cols=242 Identities=12% Similarity=0.025 Sum_probs=145.8
Q ss_pred CCChhHHHHHHH--HHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHc-C-------CCCCc
Q 045069 35 LRDPFYATKLVR--LYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRT-Q-------LKPDN 104 (554)
Q Consensus 35 ~~~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-------~~p~~ 104 (554)
.-|+.+-.++++ .|.--|+.+.|.+..+.+.+ -..|..+.+.|.+.++.+-|.-.+-.|... | .+-+.
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 346666666665 56677899999888777663 346999999999988888777776666432 1 11121
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC-CCcchHHHHHHHHHhC
Q 045069 105 FTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-PDLVLCNSMISGFAHC 183 (554)
Q Consensus 105 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~ 183 (554)
.+=..+.......|.+++|+.++++-.+. ..|-..|-..|+|++|.++-+.-.. .=..+|......+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 33334444556789999999999887664 3455677788999999998765433 2233566666666677
Q ss_pred CChhhHHHHHHHHHH----------CC---------CCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHH
Q 045069 184 GFWDKSLQLFDWMLR----------LG---------KTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSS 244 (554)
Q Consensus 184 ~~~~~a~~~~~~m~~----------~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (554)
++.+.|++.|++-.. .. -..|...|.-.-.-+-..|+.+.|..++....+ |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 889999888876311 10 011222222222222334444444444443322 22
Q ss_pred HHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045069 245 VLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLN 298 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 298 (554)
++++..|-.|+.++|-++-++ ..|......|.+.|-..|++.+|...|-+.+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333444445555555555443 2344455566677777777777777776554
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=7.1e-05 Score=81.10 Aligned_cols=259 Identities=14% Similarity=0.087 Sum_probs=138.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCcchhHHHHHHHHHh----cC-CchHHHHHHHHHHH
Q 045069 281 YSQQGDYGKALYYFRKLNMQGKKADP----VLIASVLAAAAKSANVWPGAVIHGYVIQH----GF-ELSVMVSSALVDMY 351 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~ 351 (554)
+...|++++|...+++....-...+. .....+...+...|+++.|...+.+.... |. ......+..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34455566665555554432111111 12233334445556666666555554421 11 11123344455556
Q ss_pred HccCChHHHHHHHhccCC-------CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHH
Q 045069 352 SKCGYLGLGIQVFETMSE-------RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEK--GLNPD--ESTFSALLCA 416 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~ 416 (554)
...|+++.|...+++... ++ ...+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 666676666666554331 11 112333444555667777777777766542 11122 2234445556
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHH-----HHHHHHHHhcCChHHHHHHHHhCCCCC--Chh----hHHHHHHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHY-----IYMVKLLGLAGNLEEAYSFIWSLPKPV--DPA----VSGALLSCC 485 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~l~~~~ 485 (554)
+...|+++.|.+.+.+.............+ ...+..+...|+.+.|.+++....... ... .+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 667788888887777765421111111101 112233445778888888876654211 111 134556667
Q ss_pred HhcCChHHHHHHHHHHHhcC------CCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 486 HIYGNSDLAEIVAHQLFEND------PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
...|+.++|...++++.... +.....+..++.++.+.|+.++|.+.+.++.+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77788888888888877651 1223456667778888888888888888887644
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=3.4e-06 Score=83.93 Aligned_cols=176 Identities=16% Similarity=0.073 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHhcCCCCh-hHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhH
Q 045069 21 RTKELHALVAKASLLRDP-FYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLL 96 (554)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 96 (554)
....++..++...+.|+. ..|..|.+.|+...+...|.+.|+..- ..+..++......|++..+++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 445666666666665554 578899999999888899999998765 4567788899999999999999998844433
Q ss_pred HcCC-CCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchH-H
Q 045069 97 RTQL-KPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLC-N 174 (554)
Q Consensus 97 ~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 174 (554)
+... ..-...|....-.+...++..++..-|+...+..+. |...|..+..+|.++|++..|+++|.+....++..+ .
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 3211 001112333334466778888888888888776643 788999999999999999999999988776443332 2
Q ss_pred H--HHHHHHhCCChhhHHHHHHHHH
Q 045069 175 S--MISGFAHCGFWDKSLQLFDWML 197 (554)
Q Consensus 175 ~--li~~~~~~~~~~~a~~~~~~m~ 197 (554)
. ....-+..|.+.+++..+....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1 1223455688888888777654
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.2e-05 Score=77.39 Aligned_cols=342 Identities=17% Similarity=0.123 Sum_probs=181.2
Q ss_pred chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHH
Q 045069 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLR 97 (554)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 97 (554)
++.-.....+...+.| ..++.++|+|.+.|...++-.+ +++++ |..--+..+.-||...++--|.-.|++=.-
T Consensus 853 RLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 853 RLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred hHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 3333344555555666 4788999999999988775433 22222 222222334445554444333222211000
Q ss_pred c----CCCCCcccHHHHHHHhhcCCChhh-----------HHHHHHHHHHhcCC--CCHhHHHHHHHHHHcCCCHhHHHH
Q 045069 98 T----QLKPDNFTYACITRACSENSDLPG-----------LRFVHGGAIVSGLG--RDSITSSALVTAYSKLSLIDEAIK 160 (554)
Q Consensus 98 ~----~~~p~~~~~~~ll~~~~~~~~~~~-----------a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 160 (554)
. ++--....|....+-+.+..|.+. -+++.++....+++ .|++..+..+.++...+-..+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 0 000011122222222222222221 13445555555432 355566666777888888888888
Q ss_pred hhcccCC-CCcc-----hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHh
Q 045069 161 VFDGVSD-PDLV-----LCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKS 234 (554)
Q Consensus 161 ~~~~~~~-~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 234 (554)
+++++.- +++. .-|.|+-...+. +..+..+..+++..-. .|+ +...+...+-+++|..+|+..
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf--- 1074 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKF--- 1074 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHh---
Confidence 8877643 3322 233344333333 3445555665553321 122 122333445555565555432
Q ss_pred cCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 045069 235 SFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLA 314 (554)
Q Consensus 235 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 314 (554)
..+....+.|+ -.-+.++.|.+.-++..+| ..|+.+..+-.+.|...+|++-|-+. -|+..|..++.
T Consensus 1075 --~~n~~A~~VLi---e~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1075 --DMNVSAIQVLI---ENIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVID 1141 (1666)
T ss_pred --cccHHHHHHHH---HHhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHH
Confidence 22223333333 2345667777666665554 46777777877888888777766542 35667778888
Q ss_pred HHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEF 394 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 394 (554)
.+.+.|.+++-..++....+..-+|.+. +.|+-+|++.++..+-++++. .||+.....+..-|...|.++.|.-+
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 8888888888777777776665555444 456777787777776665543 34544444555555555555555444
Q ss_pred H
Q 045069 395 F 395 (554)
Q Consensus 395 ~ 395 (554)
|
T Consensus 1217 y 1217 (1666)
T KOG0985|consen 1217 Y 1217 (1666)
T ss_pred H
Confidence 4
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=7.6e-07 Score=82.62 Aligned_cols=400 Identities=13% Similarity=0.038 Sum_probs=214.2
Q ss_pred HHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CC-cchHHHHHHHHHhCCChhh
Q 045069 112 RACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PD-LVLCNSMISGFAHCGFWDK 188 (554)
Q Consensus 112 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~ 188 (554)
++....|+++.|...|-+.+...+. |...|..-..+|+..|++++|++=-.+-.+ |+ ...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 4566789999999999888877644 888888888999999999888865544433 43 3468888888888899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHH-----HHHhcCChhhHHHHH
Q 045069 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS-----MYARCNCMNSAYHVF 263 (554)
Q Consensus 189 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~ 263 (554)
|+.-|.+-.+.. +.+...+..+..+. ..+.+. ...-.++..+..+.. .+...-.+-.-+..+
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~--------~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA--------DQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh--------hhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 999998876642 22344555555554 111000 011111222221111 111111111111111
Q ss_pred hhcCCCChhh---HHHHHHHHHhcCCHH-HHHHHHHHHH-hCCCCC----------------------CHHHHHHHHHHH
Q 045069 264 NSLFHPDLVT---WSALITGYSQQGDYG-KALYYFRKLN-MQGKKA----------------------DPVLIASVLAAA 316 (554)
Q Consensus 264 ~~~~~~~~~~---~~~l~~~~~~~g~~~-~a~~~~~~m~-~~~~~~----------------------~~~~~~~l~~~~ 316 (554)
..-+. +... ...++.+.......+ .....-..+. ..+..| -..-...+..+.
T Consensus 156 ~~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 156 QKNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hcCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 11100 0000 001111110000000 0000000000 000011 001122344444
Q ss_pred hccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCc---c-------hHHHHHHHHHcCC
Q 045069 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNI---I-------TYNSVILGLGLHG 386 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~-------~~~~l~~~~~~~~ 386 (554)
.+..++..+.+-+....+.. -++.-++....+|...|.+..+...-+...+..- . .+..+..+|.+.+
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 44555555555555555443 3444445555556665555554444333221110 0 1122233445556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT-EHYIYMVKLLGLAGNLEEAYSF 465 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 465 (554)
+++.++..|++.......|+.. .+....+++....+... -+.|.. .-...-...+.+.|++.+|++.
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 6666666666655433332221 11222233333332221 233332 1112235566788999999999
Q ss_pred HHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 466 IWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 466 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+.++. .|.|...|..-..+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.|++.++.++
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 98864 4678888888888899999999999999999999999999888888888888999999999998887664
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=1.2e-07 Score=80.69 Aligned_cols=120 Identities=8% Similarity=0.063 Sum_probs=84.3
Q ss_pred CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH-HhcCC--hHHH
Q 045069 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC-HIYGN--SDLA 494 (554)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~-~~~~~--~~~A 494 (554)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++.. .+.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5555666666666655 245567777777777777777777777777653 255666666666653 55565 4778
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.++++++++.+|+++..+..++..+.+.|++++|+..++++++....
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888887888888888888888887765543
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.88 E-value=1.7e-07 Score=83.34 Aligned_cols=182 Identities=12% Similarity=-0.034 Sum_probs=118.9
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH----
Q 045069 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES---- 408 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---- 408 (554)
.....+..+...+...|++++|...|+++.+ |+. ..+..+..++...|++++|...++++.+. .|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHH
Confidence 3455666677777777888888888776653 322 24566677777788888888888887773 33221
Q ss_pred HHHHHHHHHhcC--------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH
Q 045069 409 TFSALLCACCHG--------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGA 480 (554)
Q Consensus 409 ~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 480 (554)
++..+..++... |++++|.+.++.+.+. .+.+...+..+..... ..... ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 344444455443 6677777777777663 2222222222211110 00000 011224
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+...+...|++++|+..++++++..|++ +..+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999997765 4788999999999999999999999887654
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=2.9e-06 Score=72.75 Aligned_cols=412 Identities=12% Similarity=0.077 Sum_probs=213.0
Q ss_pred CCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CCcchHHH-
Q 045069 99 QLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PDLVLCNS- 175 (554)
Q Consensus 99 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~- 175 (554)
|+....--+.+++..+.+..++..|.+++..-.++.. .+....+.|..+|-...++..|-..++++.. |...-|..
T Consensus 5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 4444444567777777777788888877766655532 2555666777777778888888888877765 44444432
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHH--HcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 045069 176 MISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLIS--GLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARC 253 (554)
Q Consensus 176 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 253 (554)
-...+.+.+.+..|+++...|... |+...-..-+. .....+++..+..+.+..... .+..+.+.......+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeecc
Confidence 235566777778888877776442 22111111111 112344555554444433211 1222222333334455
Q ss_pred CChhhHHHHHhhcCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcch---hH
Q 045069 254 NCMNSAYHVFNSLFH----PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP---GA 326 (554)
Q Consensus 254 ~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~ 326 (554)
|+.+.|.+-|+...+ .....||.-+. ..+.|+++.|++...+++++|++-.+..- .|-..+ +.
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElg---------IGm~tegiDvr 227 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELG---------IGMTTEGIDVR 227 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccC---------ccceeccCchh
Confidence 556666555555422 22334443333 23445556666666666555543222100 000000 00
Q ss_pred HHHH--HHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CCcchHHHHHHHHHcCCChHHHHHHHHHHH
Q 045069 327 VIHG--YVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RNIITYNSVILGLGLHGFTYQAFEFFRDII 399 (554)
Q Consensus 327 ~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 399 (554)
.+-+ .|-. ..-+..+|.-...+.+.|+++.|.+.+-.|+. .|++|...+.-.=. .+++.+..+-++-+.
T Consensus 228 svgNt~~lh~---Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 228 SVGNTLVLHQ---SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLL 303 (459)
T ss_pred cccchHHHHH---HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHH
Confidence 0000 0000 01123344444556788999999999999983 56666655433222 344555555555555
Q ss_pred HcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC-CChhHHHHHHHHHH-hcCChHHHHHHHHhCCCCCChh
Q 045069 400 EKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ-AKTEHYIYMVKLLG-LAGNLEEAYSFIWSLPKPVDPA 476 (554)
Q Consensus 400 ~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~ 476 (554)
+. .| ...||..++-.||+..-++.|-.++.+-... -.. .+...|+ +++++. ..-..++|.+-++.+.......
T Consensus 304 ~~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~k 379 (459)
T KOG4340|consen 304 QQ--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEK 379 (459)
T ss_pred hc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 53 34 3458999999999999888888887654321 111 1233333 334433 3456777777666543211111
Q ss_pred hHHHHHHHH-HhcCCh----HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 477 VSGALLSCC-HIYGNS----DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 477 ~~~~l~~~~-~~~~~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.....+..- .+..+. ..|++-|++.++.. ..+...-++.|.+..++.-++++|..-.+-
T Consensus 380 LRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 380 LRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 111111111 122222 22333344444331 123344567788999999999999887653
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=1.9e-05 Score=75.21 Aligned_cols=192 Identities=12% Similarity=0.042 Sum_probs=106.3
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C---Cc--chHHHHHHHHH
Q 045069 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R---NI--ITYNSVILGLG 383 (554)
Q Consensus 311 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~--~~~~~l~~~~~ 383 (554)
.+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++..+ | +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 44445566666666666666666654 33455666677777777777777777776553 1 11 13445667777
Q ss_pred cCCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhcCCchHHHHHH--HHHhHHHhCCCCC--hhHHHHHHHHHHh
Q 045069 384 LHGFTYQAFEFFRDIIEKGL-NPDESTF-S--ALLCACCHGGLVNDGREI--FTRMTEEYGIQAK--TEHYIYMVKLLGL 455 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~--~~~~~~~~~~~~~--~~~~~~l~~~~~~ 455 (554)
..|++++|..++++...... .+..... . .++..+...|..+.+.++ +...... ..+.. .........++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhc
Confidence 88888888888887754222 1111111 1 223333444443333332 1111110 11111 1222245666677
Q ss_pred cCChHHHHHHHHhCCC---C---C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 456 AGNLEEAYSFIWSLPK---P---V-----DPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~~---~---~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
.|+.++|.+.++.+.. . . ..........++...|+.+.|.+.+.+++..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888877542 1 0 1112222334456889999999998888765
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.78 E-value=2.2e-07 Score=74.70 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=75.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 045069 393 EFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-- 470 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 470 (554)
.++++..+ +.|+. +..+...+...|++++|...|+.... --+.+...+..+..++.+.|++++|...|++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 33443 33455566667777777777777655 234456666666666667777777777766643
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
.+.++..+..+..++...|+.++|+..++++++..|+++..+...+.+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 2556666666666667777777777777777777777766666655443
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.75 E-value=1.3e-07 Score=75.90 Aligned_cols=110 Identities=9% Similarity=-0.086 Sum_probs=95.1
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
.++++..+ +.|+ .+..+...+...|++++|...|+... .+.+...+..+..++...|++++|...|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555544 3454 35567888899999999999999864 46788999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
|+++..+..++.++...|++++|++.+++.++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999998876543
No 107
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.74 E-value=1.4e-06 Score=89.54 Aligned_cols=205 Identities=10% Similarity=0.069 Sum_probs=159.5
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHhccCC--------CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 045069 338 ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--------RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDEST 409 (554)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 409 (554)
+-+...|-..|.-....++.++|.++.++..+ .-...|.+++..-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 34456677777777888888888888887663 12346777777777777788888899998873 333446
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---ChhhHHHHHHHH
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPV---DPAVSGALLSCC 485 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 485 (554)
|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-+.|..++.++. .-| ........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888889999999999999999998755 667788889999999999889988888753 222 233444455556
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCe
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGV 546 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 546 (554)
.+.||.+.+..+|+..+...|.....|..+++.-.+.|+.+.++.+|++++..++.+...-
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 7889999999999999999999999999999999999999999999999998887765543
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.70 E-value=6.4e-05 Score=81.45 Aligned_cols=258 Identities=8% Similarity=-0.091 Sum_probs=149.1
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCCh----hhHHHHHHHcccCCccchhhHHHHHHHHhcCC-----CchhHHHHHHHH
Q 045069 179 GFAHCGFWDKSLQLFDWMLRLGKTPDE----YTLVGLISGLWEPSLLSVGQGIHGFCLKSSFD-----SYDYVSSVLVSM 249 (554)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~ 249 (554)
.+...|++++|...+++....-...+. .....+...+...|+++.|...+......... ........+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566677776666665442111111 12333444455667777766666655432111 112233455566
Q ss_pred HHhcCChhhHHHHHhhcCC-------C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC--HHHHHHHHH
Q 045069 250 YARCNCMNSAYHVFNSLFH-------P----DLVTWSALITGYSQQGDYGKALYYFRKLNMQG--KKAD--PVLIASVLA 314 (554)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~~~--~~~~~~l~~ 314 (554)
+...|+++.|...+++... + ....+..+...+...|++++|...+.+..... ..+. ...+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6777888777777665411 1 11223444555667788888888887765421 1121 223444555
Q ss_pred HHhccCCcchhHHHHHHHHHhcC--Cc--hH-H-HHHHHHHHHHccCChHHHHHHHhccCCCCcc-------hHHHHHHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGF--EL--SV-M-VSSALVDMYSKCGYLGLGIQVFETMSERNII-------TYNSVILG 381 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~--~~--~~-~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~l~~~ 381 (554)
.....|+.+.|...+........ .. .. . .....+..+...|+.+.|...+.....+... .+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 66778888888888777654211 11 00 0 0011224445578888888888766542211 13456667
Q ss_pred HHcCCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEK----GLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
+...|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78889999999998887753 322222 35666777788999999999999988773
No 109
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=2.2e-06 Score=86.45 Aligned_cols=127 Identities=12% Similarity=0.022 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLS 483 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 483 (554)
...+..|.......|.+++|..+++...+ +.|+ ......++..+.+.+++++|+..+++.. .+.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 33444444444444444444444444433 2222 3333444444444444554444444432 1333344444444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++...|++++|..+|+++...+|+++..+..++.++...|+.++|...|++..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444555555555555544444444445555444555555555555444443
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.69 E-value=2.3e-08 Score=56.88 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=23.9
Q ss_pred cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccC
Q 045069 134 GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVS 166 (554)
Q Consensus 134 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 166 (554)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777663
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.68 E-value=4.5e-05 Score=67.04 Aligned_cols=195 Identities=13% Similarity=0.032 Sum_probs=138.3
Q ss_pred HHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC---CCCcchHHHHHHHHHcCCChH
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS---ERNIITYNSVILGLGLHGFTY 389 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 389 (554)
+..+...|+...|......+++.. +-+...|..-..+|...|++..|+.-++... ..+..+.-.+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 344556678888888877777654 5567777777888888888888877666544 356666666777777888888
Q ss_pred HHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHhcCCchHHHHHHHHHhHHHhCCCCC-----hhHHHHHHH
Q 045069 390 QAFEFFRDIIEKGLNPDEST----FSAL---------LCACCHGGLVNDGREIFTRMTEEYGIQAK-----TEHYIYMVK 451 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~ 451 (554)
.++...++.++ +.||... |..+ +......+++.++++..+...+. .|. ...+..+..
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeee
Confidence 88888888877 6677542 2211 11234456777777777776552 333 234556777
Q ss_pred HHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 452 LLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
++...|++.+|++...+... +.|..++..-..+|.-...++.|+.-|+.+.+.+|++..+-.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 77788899999998888642 445778877788888888999999999999998888765443
No 112
>PLN02789 farnesyltranstransferase
Probab=98.67 E-value=9.6e-06 Score=74.22 Aligned_cols=212 Identities=13% Similarity=0.016 Sum_probs=136.1
Q ss_pred CCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC-ChHHHHHHHhccCC---CCcchHHHHHHHHHcCCC--hHHHHH
Q 045069 320 ANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG-YLGLGIQVFETMSE---RNIITYNSVILGLGLHGF--TYQAFE 393 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~a~~ 393 (554)
+..++|......+++.. +-+..+|+....++...| ++++++..++.+.+ .+..+|+.....+.+.|+ .++++.
T Consensus 51 e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHH
Confidence 33444444444444432 222333433333444445 45677777766653 233345544444444454 366788
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc---CCh----HHHHHH
Q 045069 394 FFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA---GNL----EEAYSF 465 (554)
Q Consensus 394 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~ 465 (554)
+++++.+ ..| |..+|.....++...|+++++++.++++.+. -+.+..+|+....++.+. |.. ++++++
T Consensus 130 ~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 130 FTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8888887 344 4557888888888888899999999988874 344556666666555444 222 456666
Q ss_pred HHhCC--CCCChhhHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC----------------
Q 045069 466 IWSLP--KPVDPAVSGALLSCCHIY----GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG---------------- 523 (554)
Q Consensus 466 ~~~~~--~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 523 (554)
..++. .+.+...|..+...+... +...+|.+.+.++.+.+|.++.....|+++|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 65543 366778888888877763 44567889999988889999999999999998643
Q ss_pred --ChhHHHHHHHHHh
Q 045069 524 --RWDDVMKLRDDIV 536 (554)
Q Consensus 524 --~~~~A~~~~~~~~ 536 (554)
..++|.++++.+.
T Consensus 286 ~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 286 LSDSTLAQAVCSELE 300 (320)
T ss_pred cccHHHHHHHHHHHH
Confidence 3467888888884
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=2.1e-06 Score=72.57 Aligned_cols=156 Identities=12% Similarity=0.120 Sum_probs=123.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh
Q 045069 376 NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL 455 (554)
Q Consensus 376 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (554)
..+-..+...|+-+....+....... -.-|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 55666777788888877777775542 222334455677788888999999999988877 577888889999999999
Q ss_pred cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 456 AGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.|++++|..-|.+.. .+.++...+.+...+.-.||.+.|..++..+....+.+..+...|+-+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999988887764 366778888888888888999999999988888888888888888888888999998888765
Q ss_pred H
Q 045069 534 D 534 (554)
Q Consensus 534 ~ 534 (554)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.64 E-value=0.00031 Score=65.88 Aligned_cols=422 Identities=13% Similarity=0.080 Sum_probs=244.0
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHH
Q 045069 35 LRDPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACIT 111 (554)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 111 (554)
+-|..+|+.||+-+..+ .+++++..++++. ..+...|..-|+.-.+.++++....+|.+.+..- .+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 66889999999988877 8999999999876 2356789999999999999999999999987753 3556666655
Q ss_pred HHhh-cCCChhhHH----HHHHH-HHHhcCCCCH-hHHHHHHHH---------HHcCCCHhHHHHhhcccCC-C------
Q 045069 112 RACS-ENSDLPGLR----FVHGG-AIVSGLGRDS-ITSSALVTA---------YSKLSLIDEAIKVFDGVSD-P------ 168 (554)
Q Consensus 112 ~~~~-~~~~~~~a~----~~~~~-~~~~~~~~~~-~~~~~li~~---------~~~~g~~~~A~~~~~~~~~-~------ 168 (554)
.--. ..|+....+ +.|+- +.+-|.++-. ..|+..+.- |..+.+++...++++++.. |
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 5433 223333322 22332 2334543322 234444432 3445567777888887764 1
Q ss_pred ---CcchHHHHHHHHH-------hCCChhhHHHHHHHHHH--CCCCCChhh---------------HHHHHHHcccCCcc
Q 045069 169 ---DLVLCNSMISGFA-------HCGFWDKSLQLFDWMLR--LGKTPDEYT---------------LVGLISGLWEPSLL 221 (554)
Q Consensus 169 ---~~~~~~~li~~~~-------~~~~~~~a~~~~~~m~~--~~~~p~~~~---------------~~~ll~~~~~~~~~ 221 (554)
|-..|..-|+... +...+-.|.++++++.. +|..-...+ |..+|.- -+.+-.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL 252 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCc
Confidence 2222222222111 23345667777776643 233222111 2222211 111100
Q ss_pred c---------hhhHHHHHH-HHhcCCCchhHH-----HHHHHHHHhcCCh-------hhHHHHHhhcCC----CChhhHH
Q 045069 222 S---------VGQGIHGFC-LKSSFDSYDYVS-----SVLVSMYARCNCM-------NSAYHVFNSLFH----PDLVTWS 275 (554)
Q Consensus 222 ~---------~a~~~~~~~-~~~~~~~~~~~~-----~~l~~~~~~~~~~-------~~a~~~~~~~~~----~~~~~~~ 275 (554)
. ...-.++.+ .-.+..|+.... ....+.+...|+. +++.+++++... .+...|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011112221 122333332211 1112233344443 344455554422 2333333
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc-hHHHHHHHHHHH
Q 045069 276 ALITGY---SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL-SVMVSSALVDMY 351 (554)
Q Consensus 276 ~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 351 (554)
.+.+-- ......+.....++++...-..--..+|...+....+..-+..|..+|.++.+.+..+ .+.++++++.-|
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 332211 1111355555666666544333333466777777778888888899999988877766 778888888877
Q ss_pred HccCChHHHHHHHhccCC--CCcchH-HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCchHHH
Q 045069 352 SKCGYLGLGIQVFETMSE--RNIITY-NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES--TFSALLCACCHGGLVNDG 426 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a 426 (554)
|. ++.+-|.++|+--.+ +|...| ...+.-+...++-..+..+|++.+..++.|+.. .|..++.--..-|+...+
T Consensus 413 cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred hc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 65 678888888886543 454443 556777788888888899999988886666654 788888888888998888
Q ss_pred HHHHHHhHHHhC--CCCChhHHHHHHHHHHhcCChHH
Q 045069 427 REIFTRMTEEYG--IQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 427 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
.++-+++...+. ..+....-..+++-|.-.+....
T Consensus 492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 888887766433 22333334445555555554433
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=3.9e-06 Score=71.07 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=113.7
Q ss_pred HHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045069 345 SALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG 421 (554)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 421 (554)
..+-..+...|+-+....+...... .|.......+....+.|++..|...+++.... -++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence 4455666667777777776666442 33345555788888888888888888888773 3456668888888888888
Q ss_pred chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 045069 422 LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAH 499 (554)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 499 (554)
+++.|..-|.+..+- .+-++..++.+.-.|.-.|+.+.|..++..... +.+...-..+..+....|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888888888772 334466677888888888888888888877542 3467777788888888888888888766
Q ss_pred HHH
Q 045069 500 QLF 502 (554)
Q Consensus 500 ~~~ 502 (554)
+-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 543
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=5.8e-08 Score=55.20 Aligned_cols=32 Identities=34% Similarity=0.717 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHh
Q 045069 402 GLNPDESTFSALLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 402 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 433 (554)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=3.5e-05 Score=77.04 Aligned_cols=451 Identities=11% Similarity=0.011 Sum_probs=238.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhc-CCCCHhHHHHHHHH
Q 045069 70 FLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSG-LGRDSITSSALVTA 148 (554)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~ 148 (554)
..|..|...|..-.+...|...|+...+.+. .+......+...+++..+++.|..+.-..-+.. ...-..-|..+.-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3466666666666667777777777766432 245556666777777777777776621111110 00011122223334
Q ss_pred HHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHH--HHcccCCccch
Q 045069 149 YSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLI--SGLWEPSLLSV 223 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~~~~~ 223 (554)
|.+.++...|+.-|+.... .|...|..+..+|.+.|++..|+++|.+.... .|+. +|...- -.-+..|.+..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHH
Confidence 5556666677766666554 35556777788888888888888888776553 3432 222111 12345677777
Q ss_pred hhHHHHHHHHhc------CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHH-HHHHhcC-C---HHHHHH
Q 045069 224 GQGIHGFCLKSS------FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALI-TGYSQQG-D---YGKALY 292 (554)
Q Consensus 224 a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~-~~~~~~g-~---~~~a~~ 292 (554)
+...++.+.... ...-..++-.+...+.-.|-...|.+.+++-. ..+...+ ...+... . ...|..
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asdac~ 724 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASDACY 724 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhHHHH
Confidence 776666554321 11111122222222222333333444433321 1111111 1100000 0 112223
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHH-----HHHhcCCchHHHHHHHHHHHHc----c----CChHH
Q 045069 293 YFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGY-----VIQHGFELSVMVSSALVDMYSK----C----GYLGL 359 (554)
Q Consensus 293 ~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~ 359 (554)
+|-... .. .|+......+..-....+....-. ++-- ........+..+|..|+..|.+ . .+...
T Consensus 725 ~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 725 IFSQEE-PS-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHhc-cc-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 333222 11 333333322222222222221100 0000 0011111223333333333322 1 22335
Q ss_pred HHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 360 GIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 360 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
|+..+....+ .+..+|+.|.-. ...|.+.-|...|-+-.. ..|. ..+|..+.-.+.+..+++.|...|...+.
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 6666665543 555667766555 666788888777766665 3444 44788888888999999999999998876
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-----C--CCCChhhHHHHHHHHHhcCChHH----------HHHHH
Q 045069 436 EYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL-----P--KPVDPAVSGALLSCCHIYGNSDL----------AEIVA 498 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~----------A~~~~ 498 (554)
-.|.+...|-.........|+.-++..+|.-- . ..++...|.........+|+.++ |--.+
T Consensus 879 --LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 879 --LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred --cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 23445555655555556778888888887651 1 13444444444444445555443 44455
Q ss_pred HHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 499 HQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 499 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++.....|+....|...+....+.+.+++|.+...+++
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66666689999999999999999999999999888765
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=1.9e-06 Score=82.90 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=122.8
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045069 338 ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417 (554)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 417 (554)
+|--..-..+...+...|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+|++.-|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 343444455666777777777777777764 3566667777777777777777776666 456777777777766
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHH
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
....-+++|.++.+....+ .-..+.....+.++++++.+.++.-. .+....+|..+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 6666667777766665442 12222333344667777777776532 2456666777776677777777777
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 496 IVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
..|...+...|++...++.+..+|.+.|+..+|...+++..+-+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 77777777777777777777777777777777777777776655
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.59 E-value=7.5e-06 Score=69.67 Aligned_cols=157 Identities=9% Similarity=0.024 Sum_probs=119.8
Q ss_pred HHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHH
Q 045069 348 VDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGR 427 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 427 (554)
+-.|...|+++.+....+.+..|.. .+...++.+++...++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4567788888777655544332210 1223667788888888888742 345668999999999999999999
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045069 428 EIFTRMTEEYGIQAKTEHYIYMVKLL-GLAGN--LEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLF 502 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (554)
..|++..+- .+.+...+..+..++ ...|+ .++|.+++++.. .+.+...+..+...+...|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999872 445678888888874 67777 599999999975 36688889999999999999999999999999
Q ss_pred hcCCCCchhHHHH
Q 045069 503 ENDPRKGAYKVML 515 (554)
Q Consensus 503 ~~~p~~~~~~~~l 515 (554)
+..|++..-+..+
T Consensus 172 ~l~~~~~~r~~~i 184 (198)
T PRK10370 172 DLNSPRVNRTQLV 184 (198)
T ss_pred hhCCCCccHHHHH
Confidence 9988776555444
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=2.8e-06 Score=81.86 Aligned_cols=215 Identities=15% Similarity=0.093 Sum_probs=122.2
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 316 (554)
+|-...-..+...+.+.|-...|..+|++ ...|..++.+|...|+..+|..+..+-.+ -+||+..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 34444455666667777777777777765 34455666677777777777776666555 356666665555554
Q ss_pred hccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHH
Q 045069 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
....-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+ --..+|-.+..+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 4444455555554443221 111222222335666666666664332 233455555556666666666666
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 394 FFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 394 ~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
.|..... ..||.. .|+.+-.+|.+.++-.+|...+++..+- . ..+..+|...+-...+.|.+++|.+.+.++
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 6666665 455544 5666666666666666666666666552 3 333444555555556666666666666554
No 121
>PLN02789 farnesyltranstransferase
Probab=98.58 E-value=4.2e-06 Score=76.58 Aligned_cols=196 Identities=11% Similarity=0.046 Sum_probs=146.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccCCCC---cchHHHHHHHHHcCC-ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMSERN---IITYNSVILGLGLHG-FTYQAFEFFRDIIEKGLNPDE-STFSALLCAC 417 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~ 417 (554)
++..+-..+...++.++|+.+.+.+.+.+ ..+|+.-...+...| ++++++..++++.+. .|+. .+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHH
Confidence 33444455666788999999999887533 335555555666667 689999999999984 4443 4666655555
Q ss_pred hcCCch--HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc---CC
Q 045069 418 CHGGLV--NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY---GN 490 (554)
Q Consensus 418 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~ 490 (554)
.+.|+. +++..+++++.+ .-+-+..+|+....++.+.|+++++++.++++. .+.+...|......+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc
Confidence 666653 678889988887 345678899999999999999999999999975 366778887777666554 22
Q ss_pred ----hHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHHHHHHHHhhcCCcc
Q 045069 491 ----SDLAEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 491 ----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+.++.+..++++.+|++.+.+..+..++.. .++..+|.+.+.++.+.++..
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s 254 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH 254 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc
Confidence 3578888889999999999999999999988 345678999998887755443
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.58 E-value=1.9e-05 Score=80.67 Aligned_cols=233 Identities=9% Similarity=0.023 Sum_probs=139.1
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcC--CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLF--HPD-LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAA 315 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 315 (554)
+...+..|+..|...+++++|.++.+... .|+ ...|..+...+.+.++.+++..+ . ++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhhh
Confidence 34455666677777777777777766542 222 23344444455555555444433 1 2222
Q ss_pred HhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHH
Q 045069 316 AAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAF 392 (554)
Q Consensus 316 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 392 (554)
.....++..+..+...+.+. .-+...+..+..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22333333333334444432 22334666677777777777777777777664 3455667777777777 777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 045069 393 EFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP 472 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 472 (554)
+++.+.+.. +...+++..+.++|.++.. ..+.+...+..+.+.....-. ..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~------------~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHRE------------FT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhc------------cc
Confidence 777776552 4555677777777777765 233333333333333222211 12
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
.-..++..+...|...++++++..+++.+++.+|.+......++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 234455566677888888999999999999999999888888888876
No 123
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=4e-06 Score=70.31 Aligned_cols=159 Identities=14% Similarity=0.048 Sum_probs=78.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA 456 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (554)
++-+....|+.+.|..+++.+.+. + |.+. .-..-..-+...|.+++|.++++.+.+. -+.|..++..-+-.....
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHc
Confidence 333444455555555555555543 2 3222 1111111233345555555555555552 233444444444444445
Q ss_pred CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC---ChhHHHHH
Q 045069 457 GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG---RWDDVMKL 531 (554)
Q Consensus 457 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~ 531 (554)
|+.-+|++-+.... ...|...|..+...|...|++++|.-.+++++-..|-++.++..+++.+.-.| +.+-|+++
T Consensus 134 GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY 213 (289)
T ss_pred CCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 55555555444432 24455555555555555555555555555555555555555555555544333 44455555
Q ss_pred HHHHhhcCC
Q 045069 532 RDDIVDNGL 540 (554)
Q Consensus 532 ~~~~~~~~~ 540 (554)
|.+.++...
T Consensus 214 y~~alkl~~ 222 (289)
T KOG3060|consen 214 YERALKLNP 222 (289)
T ss_pred HHHHHHhCh
Confidence 555555443
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=5.8e-05 Score=64.06 Aligned_cols=247 Identities=14% Similarity=0.056 Sum_probs=145.8
Q ss_pred cCChhhHHHHHhhc-CC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhH-HHH
Q 045069 253 CNCMNSAYHVFNSL-FH-PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGA-VIH 329 (554)
Q Consensus 253 ~~~~~~a~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~ 329 (554)
.|.+..++..-+.. .. .+...-.-+-++|...|.+..... ++.. |-.|....+..+.......++.+.-. ++.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 34454444443333 11 222333334455555665443222 1211 12333333333333333333333322 233
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH
Q 045069 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDEST 409 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 409 (554)
+.+.......+......-...|+..|++++|++..... .+....-.=+..+.+..+.+-|.+.+++|.+- .+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence 34444433333333334445688888888888888873 23333333344566777788888888888772 24557
Q ss_pred HHHHHHHHhc----CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 045069 410 FSALLCACCH----GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLS 483 (554)
Q Consensus 410 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 483 (554)
.+.|..++.+ .+.+..|.-+|+++.+ ..+|++.+.+..+.+....|++++|..++++.. ...++.++..++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 7766666553 4568888889999877 478888888888888888889999988888864 3567777777776
Q ss_pred HHHhcCCh-HHHHHHHHHHHhcCCCCch
Q 045069 484 CCHIYGNS-DLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 484 ~~~~~~~~-~~A~~~~~~~~~~~p~~~~ 510 (554)
+....|.. +...+.+.++....|..+.
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 66666654 4456677777777777654
No 125
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=5.5e-06 Score=77.78 Aligned_cols=245 Identities=14% Similarity=0.023 Sum_probs=154.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHH
Q 045069 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG 360 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 360 (554)
+.+.|++.+|.-.|+..++.. +-+...|..|-......++-..|+..+++..+.. +-+......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 445555556555555555442 1223344444445555555555555555555544 33455555666666666666666
Q ss_pred HHHHhccCC--C----------CcchHHHHHHHHHcCCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhcCCchHHHH
Q 045069 361 IQVFETMSE--R----------NIITYNSVILGLGLHGFTYQAFEFFRDII-EKGLNPDESTFSALLCACCHGGLVNDGR 427 (554)
Q Consensus 361 ~~~~~~~~~--~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 427 (554)
.+.++.-.. | +...-+. ..+..........++|-++. +.+..+|+.....|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 666654421 0 0000000 11111122334444554444 4554567777777877788899999999
Q ss_pred HHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 428 EIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
..|+.... .-|-|..+||.|.-.++...+.++|++.|.++.. |.-...+..|..+|...|.+++|...|-.++.+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999976 2344678899999999999999999999998753 5566778889999999999999999999888874
Q ss_pred CC-----C-----chhHHHHHHHHHccCChhHHHHH
Q 045069 506 PR-----K-----GAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 506 p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
+. . ..++..|-.++.-.++.|-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 32 1 24666666666667776644443
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=1.1e-06 Score=70.49 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
..++..+...|++++|.+.++.+. .+.++..+..+..++...|++++|...++++.+.+|.++..+..++.+|...|+
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 334444444444444444444432 133444444444455555555555555555555555555555555555555555
Q ss_pred hhHHHHHHHHHhhcC
Q 045069 525 WDDVMKLRDDIVDNG 539 (554)
Q Consensus 525 ~~~A~~~~~~~~~~~ 539 (554)
+++|.+.+++..+..
T Consensus 101 ~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 101 PESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHhc
Confidence 555555555554443
No 127
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.53 E-value=9.1e-07 Score=69.61 Aligned_cols=97 Identities=10% Similarity=-0.080 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
......+...+...|++++|.++|+.+. .+.+...|..|..++...|++++|+..|.++...+|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4445566677788999999999998864 47788899999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhcC
Q 045069 521 EDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~~ 539 (554)
..|+.+.|++.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 128
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.53 E-value=4.9e-06 Score=73.92 Aligned_cols=183 Identities=17% Similarity=0.084 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCC-c-hHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcc----h
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFE-L-SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNII----T 374 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~ 374 (554)
......+......+...|+++.|...++++...... | ....+..+..++...|++++|...++.+.+ |+.. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567778888899999999999999999876522 1 234677888999999999999999999874 4322 3
Q ss_pred HHHHHHHHHcC--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhH
Q 045069 375 YNSVILGLGLH--------GFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEH 445 (554)
Q Consensus 375 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 445 (554)
+..+..++... |++++|.+.++++.+. .|+.. .+..+.... . . .... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHH-H--------HH
Confidence 55555556554 7889999999999884 55543 322221110 0 0 0000 0 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
...+...+.+.|++++|+..+++... +..+..+..++.++...|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 23566678888999999988888642 22356788888889999999999998888877665
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.51 E-value=2.4e-05 Score=79.21 Aligned_cols=137 Identities=15% Similarity=0.034 Sum_probs=106.2
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHH
Q 045069 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYM 449 (554)
Q Consensus 371 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 449 (554)
++..+..|.....+.|.+++|..+++...+ +.|+.. ....+...+.+.+++++|+..+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 466777778888888888888888888888 677765 567777788888888888888888876 344456677778
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 450 VKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
..++.+.|++++|..+|+++. .+.+..++..+..++...|+.++|...|+++++...+....
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 888888888888888888865 24457788888888888888888888888888885443333
No 130
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=5.7e-05 Score=64.12 Aligned_cols=170 Identities=10% Similarity=0.039 Sum_probs=121.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-C
Q 045069 292 YYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-R 370 (554)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 370 (554)
++.+.+.......+......-...|+..|++++|.+..+... +......=+..+.+..+.+-|.+.++.|.+ .
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 344445444444554555555567788888888888776521 223333334557788889999999999987 4
Q ss_pred CcchHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHH
Q 045069 371 NIITYNSVILGLGL----HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHY 446 (554)
Q Consensus 371 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 446 (554)
+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++....+ -..++.+.
T Consensus 168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL 244 (299)
T KOG3081|consen 168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETL 244 (299)
T ss_pred hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHH
Confidence 44566767776654 45689999999999886 7899999999999999999999999999999884 55567777
Q ss_pred HHHHHHHHhcCChHHHH-HHHHhCC
Q 045069 447 IYMVKLLGLAGNLEEAY-SFIWSLP 470 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~-~~~~~~~ 470 (554)
..++-.-...|...++. +.+.++.
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Confidence 66666666677665543 4555554
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.42 E-value=7.7e-06 Score=76.31 Aligned_cols=122 Identities=14% Similarity=0.140 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHh
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHI 487 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (554)
...|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+.. .+.+...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566667788899999999998774 244 45568888888888889999988864 24566777777778899
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
.++++.|+.+.+++.+..|.+...|..|+.+|...|++++|+-.+..+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998775
No 132
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=3e-05 Score=71.73 Aligned_cols=133 Identities=17% Similarity=0.180 Sum_probs=64.3
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHH
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 461 (554)
..|+++.|+..++.++.. .|+. .-.......+.+.++.++|.+.++++.. ..|+ ....-.+.++|.+.|+..+
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHH
Confidence 445555555555555442 2332 2333334444555555555555555544 2232 3334445555555555555
Q ss_pred HHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 462 AYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 462 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
|+.+++... .+.++..|..|..+|...|+..++..... +.|...|++++|...+....+.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A-----------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA-----------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH-----------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 555554432 24455555555555555555444443322 3444555566666666555543
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=5.2e-05 Score=70.17 Aligned_cols=136 Identities=14% Similarity=0.056 Sum_probs=93.7
Q ss_pred HHccCChHHHHHHHhccCC--CCcc-hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHH
Q 045069 351 YSKCGYLGLGIQVFETMSE--RNII-TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDG 426 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a 426 (554)
+...|+.++|+..++.+.. |+.. .+......+.+.++..+|.+.++++.. ..|+. .....+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHHH
Confidence 4456777777777777652 4443 344455667777888888888887777 55663 3455666777777888888
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
..+++.... ..+-|+..|..|.++|...|+..+|..-. ...+...|+++.|+..+..+.+..
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~---------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLAR---------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHH---------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 777777766 46667777888888888777777765443 234566777788877777777764
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=3.2e-05 Score=65.04 Aligned_cols=155 Identities=13% Similarity=0.138 Sum_probs=126.8
Q ss_pred CCChHHHHHHHHHHHH---cC-CCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 045069 385 HGFTYQAFEFFRDIIE---KG-LNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~---~g-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (554)
..+.++..+++.++.. .| ..|+.. .|..+.-+....|+.+-|...++.+..+ ++-+..+-..-.-.+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 3456777777777764 34 566766 4667777788899999999999999985 455555555555567788999
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++|+++++.+. .|.|..++..-+......|+.-+|++-+....+..|.|...+..++++|...|++++|.=.+++++-
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999975 3667778877777788889999999999999999999999999999999999999999999999987
Q ss_pred cCCc
Q 045069 538 NGLR 541 (554)
Q Consensus 538 ~~~~ 541 (554)
..+.
T Consensus 183 ~~P~ 186 (289)
T KOG3060|consen 183 IQPF 186 (289)
T ss_pred cCCC
Confidence 6543
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=9.3e-06 Score=64.95 Aligned_cols=116 Identities=15% Similarity=0.161 Sum_probs=92.6
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 045069 394 FFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-- 470 (554)
Q Consensus 394 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 470 (554)
.+++..+ ..|+. .....+...+...|++++|.+.++.+... .+.+...+..+...+.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 45544 35666777788899999999999998773 45577888889999999999999999988863
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
.+.+...+..+..++...|+++.|...++++++..|++.....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 3567788888888999999999999999999999998876443
No 136
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=9.8e-05 Score=76.63 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=132.3
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHh-cC---CchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHH
Q 045069 308 LIASVLAAAAKSANVWPGAVIHGYVIQH-GF---ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILG 381 (554)
Q Consensus 308 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~ 381 (554)
.|-..|......++.+.|.++.++++.. ++ .--...|.++++.-..-|.-+...++|+++.+ .....|..|...
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGI 1539 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3444444455555555555555554432 11 11123455555555555566666667776664 223456667777
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHHHhcCCh
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQA--KTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 459 (554)
|.+.+++++|.++++.|.++ +.-....|...+..+.+..+-+.|..++.+..+. ++. ........++.-.+.|+.
T Consensus 1540 y~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCc
Confidence 77777777777777777765 3444556777777777777777777777777652 222 344445555555667777
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCch-hHHHHHHHHHccCChhHHHHHHHH
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND--PRKGA-YKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
+.+..+|+... .|.....|..++..-.++|+.+.+..+|++++.+. |.... +|....+.-...|+-+.++.+=.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 77777777654 24456677777777777777777777777777763 33333 333333333345665555444444
Q ss_pred Hh
Q 045069 535 IV 536 (554)
Q Consensus 535 ~~ 536 (554)
+.
T Consensus 1697 A~ 1698 (1710)
T KOG1070|consen 1697 AK 1698 (1710)
T ss_pred HH
Confidence 33
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=0.0001 Score=75.56 Aligned_cols=122 Identities=11% Similarity=0.098 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI 487 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (554)
..+..+..+|.+.|+.++|..+++++.+- . +-++.+.|.++..|... ++++|.+++.+.. ..+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV------------~~~i~ 181 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI------------YRFIK 181 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH------------HHHHh
Confidence 35555555555666666666666665552 2 33455555555555555 5666655554432 12344
Q ss_pred cCChHHHHHHHHHHHhcCCCCchh--------------------HHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAY--------------------KVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~--------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
.+++..+.++++++.+.+|++... +..+-..|...++|+++.++++.+++...+...
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 445555555555555555554433 333446677888999999999999987765543
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=2.4e-05 Score=63.17 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=70.5
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCCh----hhHHHHHHHHHhcCC
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAK---TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDP----AVSGALLSCCHIYGN 490 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~ 490 (554)
..++...+...++.+.+. .+.+ ....-.+...+...|++++|...|+.... .+++ .....+...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 356666666666666663 2222 22333455566666777777777766542 2222 233445666777777
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 491 SDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
+++|+..++.. ...+-.+..+..++.+|.+.|++++|+..|++.
T Consensus 101 ~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777777552 334445667777888888888888888888764
No 139
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.27 E-value=1.8e-06 Score=50.08 Aligned_cols=34 Identities=32% Similarity=0.575 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCc
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDN 104 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 104 (554)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888874
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.27 E-value=2.7e-06 Score=58.59 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=61.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC-ChhHHHHHHHHHhhcC
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG-RWDDVMKLRDDIVDNG 539 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 539 (554)
++..|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++.++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 46678889999999999999999999999999999999999999999999 7999999999988754
No 141
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.22 E-value=2.5e-06 Score=49.02 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhHHcCCCC
Q 045069 70 FLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKP 102 (554)
Q Consensus 70 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 102 (554)
.+||.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 567888888888888888888888888777776
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.22 E-value=3.2e-06 Score=57.37 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=53.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+...+...|++++|+..++++++..|+++.++..++.++...|++++|+.+++++++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999999999999999999999999999999999987654
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.22 E-value=5.2e-05 Score=70.88 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG 421 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 421 (554)
.....|+..+...++++.|..+|+++.+.+......++..+...++-.+|.+++++.++. .+-+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 344556677777888999999999988777777777888888888888999999998874 2234556666677788999
Q ss_pred chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 422 LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
+++.|+.+.+++.+ -.|.+..+|..|+.+|...|++++|+-.++.++
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999987 345557799999999999999999999998876
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.21 E-value=1.3e-05 Score=59.60 Aligned_cols=94 Identities=15% Similarity=0.175 Sum_probs=76.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
+..++..+...|++++|.+.+++... +.+...+..+...+...+++++|...++++.+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45566777778888888888877532 4445667778888888899999999999999999988888999999999999
Q ss_pred ChhHHHHHHHHHhhcC
Q 045069 524 RWDDVMKLRDDIVDNG 539 (554)
Q Consensus 524 ~~~~A~~~~~~~~~~~ 539 (554)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998887654
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.7e-05 Score=67.91 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=94.2
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCCchhHH
Q 045069 439 IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY---GNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
-+-|...|-.|..+|...|+.+.|..-|.+.. .++++..+..+..++... .+..++..+++++++.+|.+.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45578888888899999999988888888764 366777777777775433 3567899999999999999999999
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhcCCccCCCeeeee
Q 045069 514 MLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVS 550 (554)
Q Consensus 514 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~ 550 (554)
.|+..+...|++.+|...++.|++......|..+.|+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 9999999999999999999999999988888877665
No 146
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=2.5e-05 Score=60.82 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK-PVD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSN 517 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 517 (554)
+..++..+.+.|++++|.+.+..+.. .|+ ...+..+..++...|+++.|...++++....|++ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444455555555555555555421 111 2344445556666666666666666666655543 345566666
Q ss_pred HHHccCChhHHHHHHHHHhhcC
Q 045069 518 TYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 518 ~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
++.+.|++++|.+.++++.+..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHC
Confidence 6666666666666666666554
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.16 E-value=0.00014 Score=58.75 Aligned_cols=123 Identities=14% Similarity=0.156 Sum_probs=81.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC--hhHHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE----STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK--TEHYIY 448 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 448 (554)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+... ...|+ ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 33444444 3677777777777777742 332 23344556677788888888888888774 32222 223445
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
+...+...|++++|+..++.... ...+..+...+..+...|+.++|...|+++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 67777888888888888877543 345556667777788888888888888765
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.9e-06 Score=48.63 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCCh
Q 045069 171 VLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDE 205 (554)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 205 (554)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999974
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.13 E-value=2.1e-06 Score=61.80 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHhCCC-CC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHH
Q 045069 456 AGNLEEAYSFIWSLPK-PV---DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
.|++++|+.+++++.. .| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3566666666666531 11 344555567777777888888888777 555666667777778888888888888888
Q ss_pred HHH
Q 045069 532 RDD 534 (554)
Q Consensus 532 ~~~ 534 (554)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.09 E-value=0.01 Score=56.13 Aligned_cols=175 Identities=10% Similarity=0.034 Sum_probs=127.9
Q ss_pred hHHHHHHHhccCC----CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHH
Q 045069 357 LGLGIQVFETMSE----RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 357 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
.+.....+++... .-..+|...+..-.+......|..+|.++.+.+..+ +...+++++..+| .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 4445555555442 334578888888888888999999999999988888 5667888887665 478899999999
Q ss_pred HhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 432 RMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP-----VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
--.++ +..++.--...++.+...++-..|..+|++.... .....|..++.--..-|+...+..+-++.....|
T Consensus 426 LGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 88775 4444555577888889999999999999997543 2347899999999999999999999999888877
Q ss_pred CCc----hhHHHHHHHHHccCChhHHHHHHHH
Q 045069 507 RKG----AYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 507 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
.+. ..-..+.+-|.-.+++..-..-++.
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 321 1223344566666665544444433
No 151
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.08 E-value=1.5e-05 Score=74.90 Aligned_cols=108 Identities=10% Similarity=-0.015 Sum_probs=90.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGN 490 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 490 (554)
-...+...|++++|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++. .+.+...+..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999873 45567788888999999999999999998874 35677888889999999999
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 491 SDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
+++|+..++++++.+|+++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888776554433
No 152
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.08 E-value=0.0082 Score=55.04 Aligned_cols=105 Identities=10% Similarity=0.056 Sum_probs=59.3
Q ss_pred HHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 426 (554)
-+.-+...|+...|.++-.+..-|+-.-|...+.+++..+++++...+... +-++.-|..++.+|.+.|+..+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344455556666666666666556666666666666666666655543321 11234566666666666666666
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
..+..++. +..-+..|.+.|++.+|.+..-+
T Consensus 257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555431 13345556666666666555433
No 153
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=8.7e-06 Score=46.70 Aligned_cols=33 Identities=27% Similarity=0.516 Sum_probs=24.2
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP 405 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 405 (554)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.03 E-value=0.02 Score=57.58 Aligned_cols=465 Identities=9% Similarity=-0.009 Sum_probs=232.4
Q ss_pred HHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhH
Q 045069 47 LYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGL 123 (554)
Q Consensus 47 ~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 123 (554)
.+.|.|+.++|..+++... ..|..+...+-..|...++.++|..+|+...+. .|+..-...+..++.|.+++.+-
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999998888765 346778888888999999999999999998875 56777777888889988888766
Q ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHcCC-C---------HhHHHHhhcccCCCC--cch---HHHHHHHHHhCCChhh
Q 045069 124 RFVHGGAIVSGLGRDSITSSALVTAYSKLS-L---------IDEAIKVFDGVSDPD--LVL---CNSMISGFAHCGFWDK 188 (554)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~---------~~~A~~~~~~~~~~~--~~~---~~~li~~~~~~~~~~~ 188 (554)
.++--++-+. .+-++..+=++++.+...- . ..-|.+.++.+.+.+ ..+ ...-...+-..|++++
T Consensus 130 Qkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 130 QKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 6655555553 2234444434444443321 1 223444444444322 111 1112233445778888
Q ss_pred HHHHHH-HHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHH----------------
Q 045069 189 SLQLFD-WMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYA---------------- 251 (554)
Q Consensus 189 a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------- 251 (554)
|++++. ..-+.-...+...-+.-+..+...+++.+..++-..+...|... |...++.+.
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhh
Confidence 888883 33333233333444445556666777777777777776666443 222222111
Q ss_pred hcCChhhHHHHHhhcCCC-ChhhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCC-------------CHHHHHHHHH
Q 045069 252 RCNCMNSAYHVFNSLFHP-DLVTWSALITGY---SQQGDYGKALYYFRKLNMQGKKA-------------DPVLIASVLA 314 (554)
Q Consensus 252 ~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~-------------~~~~~~~l~~ 314 (554)
..+..+...+...+.... ....|-+-+.+. -.-|+.+++...|-+ +-|.+| +..-...++.
T Consensus 285 ~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~ 362 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSLMS 362 (932)
T ss_pred hhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHHHH
Confidence 111222222222222111 112222222222 234666665544422 122222 1111222333
Q ss_pred HHhccCC-cchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCC-----hHHHHHHHhcc----CC---------CCc---
Q 045069 315 AAAKSAN-VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGY-----LGLGIQVFETM----SE---------RNI--- 372 (554)
Q Consensus 315 ~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~----~~---------~~~--- 372 (554)
.+....+ .....+.++. +.+.+..-.-.|. -+.-..++.+. .+ |..
T Consensus 363 ~l~~~~~~~s~~~k~l~~------------h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~ 430 (932)
T KOG2053|consen 363 KLVLADDDSSGDEKVLQQ------------HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSF 430 (932)
T ss_pred HhhccCCcchhhHHHHHH------------HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 3322211 1111111111 1111111111111 01111111110 00 111
Q ss_pred ------chHHHHHHHHHcCCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh
Q 045069 373 ------ITYNSVILGLGLHGFTY---QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT 443 (554)
Q Consensus 373 ------~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 443 (554)
.+.+.|+..+.+.++.. +|+-+++.-... -+-|..+=..+|+.|+-.|-+..|.++|+.+--+ .+..|.
T Consensus 431 g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DT 508 (932)
T KOG2053|consen 431 GDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDT 508 (932)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-Hhhhcc
Confidence 13456677777777755 344444444332 1223345556777888888888888888887665 566665
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCchhHHHHH
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLPK---PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP----RKGAYKVMLS 516 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~ 516 (554)
..|. +.+.+...|++..+...++.... ..-..+- .++....+.|.+.+..+...--.+.+- .-..+-....
T Consensus 509 lgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~-eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l 586 (932)
T KOG2053|consen 509 LGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETP-EYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQL 586 (932)
T ss_pred chHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhH-HHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 33445566777777777666431 1111222 223333456666655554332222211 1112333455
Q ss_pred HHHHccCChhHHHHHHHHHh
Q 045069 517 NTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~~~ 536 (554)
..+...++.++-...+..+.
T Consensus 587 ~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 587 SLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHhCCcHHHHHHHHhccc
Confidence 66677788877777777665
No 155
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.99 E-value=1.2e-05 Score=55.19 Aligned_cols=56 Identities=16% Similarity=0.356 Sum_probs=46.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
...|++++|++.++++.+.+|++..+...++.+|.+.|++++|.++++++......
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 46788888888888888888888888888888888889999998888888776543
No 156
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=5.8e-05 Score=65.49 Aligned_cols=108 Identities=17% Similarity=0.056 Sum_probs=72.1
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
+.+.+++.+|+..|.+.++ -.+-|...|..-..+|.+.|.++.|++-.+... .+....+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4556777777777777765 233456666666777777777777777666653 244556677777777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 526 (554)
++.|+++++++|++.++...|-.+-.+.+..+
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 77777777777777777766655544444433
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.95 E-value=0.00017 Score=56.10 Aligned_cols=105 Identities=14% Similarity=0.142 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC----ChhhHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PV----DPAVSGALL 482 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~ 482 (554)
++..+...+.+.|++++|...|+.+.+...-.+ ....+..+..++.+.|++++|.+.++.+.. .| .+..+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666777777777777665311101 133455566677777777777777766531 12 244566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
.++...|+.++|...++++++..|+++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7778888888888888888888887765443
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.031 Score=56.41 Aligned_cols=216 Identities=13% Similarity=0.103 Sum_probs=105.9
Q ss_pred hcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHh--hcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHH
Q 045069 81 LAHRFNDAKSLFKNLLRTQLKPDNFTYACITRAC--SENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEA 158 (554)
Q Consensus 81 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 158 (554)
..+++..|+....++.+. .||. .|..++.++ .+.|+.++|..+++.....+.. |..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 345566666666665554 2332 233444443 3666666666666655544433 556666666666666666666
Q ss_pred HHhhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCC-c---------cchhhH
Q 045069 159 IKVFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPS-L---------LSVGQG 226 (554)
Q Consensus 159 ~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~---------~~~a~~ 226 (554)
..+|++..+ |+......+..+|.+.+++.+-.+.--+|-+ ..+-+...|-++++...+.- . ...|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 666666655 4433333444555555555433222222222 12233444444444332111 0 112333
Q ss_pred HHHHHHHhc-CCCchhHHHHHHHHHHhcCChhhHHHHHhhc-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045069 227 IHGFCLKSS-FDSYDYVSSVLVSMYARCNCMNSAYHVFNSL-----FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ 300 (554)
Q Consensus 227 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 300 (554)
..+.+.+.+ ......=.......+...|++++|++++..- ...+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 344443333 1111111122223345567777777776321 2333334444556666677777777777777666
Q ss_pred C
Q 045069 301 G 301 (554)
Q Consensus 301 ~ 301 (554)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 5
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.91 E-value=0.00018 Score=67.67 Aligned_cols=89 Identities=9% Similarity=-0.029 Sum_probs=73.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA 456 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (554)
....+...|++++|+..|+++++. .|+ ...|..+..+|...|++++|+..++++.+. -+.+...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 345567789999999999999984 454 557888888899999999999999999773 344677888889999999
Q ss_pred CChHHHHHHHHhCC
Q 045069 457 GNLEEAYSFIWSLP 470 (554)
Q Consensus 457 g~~~~A~~~~~~~~ 470 (554)
|++++|+..+++..
T Consensus 84 g~~~eA~~~~~~al 97 (356)
T PLN03088 84 EEYQTAKAALEKGA 97 (356)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998864
No 160
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.90 E-value=0.0028 Score=60.92 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLG 454 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (554)
...+..-+.+...+..|.++|.+|-+ ...++..+...+++++|..+-+...+ +.|| +|....+.++
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe---~~~d--Vy~pyaqwLA 815 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE---FKDD--VYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc---cccc--ccchHHHHhh
Confidence 33333334444444445555544432 12234444555555555554444322 2222 2333444445
Q ss_pred hcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 455 LAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 455 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...+++||.+ ++.+.|+..+|.++++++...
T Consensus 816 E~DrFeEAqk-------------------AfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQK-------------------AFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHH-------------------HHHHhcchHHHHHHHHHhhhh
Confidence 5555555543 345667777777777776544
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.89 E-value=4.2e-05 Score=53.31 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..+.+.++++.|.++++++++.+|+++..+...+.++.+.|++++|.+.++++.+.++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 457788999999999999999999999999999999999999999999999998776543
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=6e-05 Score=65.36 Aligned_cols=93 Identities=13% Similarity=0.085 Sum_probs=83.6
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 528 (554)
.-+.+.+++.+|+..|.++. .+.++..|..-..+|.+.|.++.|++-.+.++..+|.....|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567899999999999865 3678888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCccC
Q 045069 529 MKLRDDIVDNGLRKE 543 (554)
Q Consensus 529 ~~~~~~~~~~~~~~~ 543 (554)
++.|++.++..+...
T Consensus 169 ~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHhhhccCCCcH
Confidence 999999988765544
No 163
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.85 E-value=0.0059 Score=53.91 Aligned_cols=171 Identities=11% Similarity=0.010 Sum_probs=102.3
Q ss_pred HHHHHccCChHHHHHHHhccCC--CCcc-h---HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhc
Q 045069 348 VDMYSKCGYLGLGIQVFETMSE--RNII-T---YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE--STFSALLCACCH 419 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~ 419 (554)
...+...|++++|.+.|+.+.. |+.. . .-.++.++.+.++++.|...+++..+. .|+. ..|...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence 3345556788888888777763 3332 1 133556677788888888888888773 3332 233333333221
Q ss_pred --C---------------Cc---hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHH
Q 045069 420 --G---------------GL---VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSG 479 (554)
Q Consensus 420 --~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 479 (554)
. .| ...|...|+.++++ . |+. .-..+|...+..+.... ...-.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~S-------------~ya~~A~~rl~~l~~~l-a~~e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PNS-------------QYTTDATKRLVFLKDRL-AKYEL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--C-cCC-------------hhHHHHHHHHHHHHHHH-HHHHH
Confidence 1 11 23455555565553 2 222 12233333222221110 01112
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.+..-|.+.|.+..|..-++.+++..|+.+ .....++.+|...|..++|.++.+.+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 355668899999999999999999987765 5666778899999999999998877643
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.82 E-value=0.00022 Score=52.15 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHcCC-CCCcccHHHHHHHhhcCC--------ChhhHHHHHHHHHHhcCCCCHhHHH
Q 045069 73 NSIIRAYALAHRFNDAKSLFKNLLRTQL-KPDNFTYACITRACSENS--------DLPGLRFVHGGAIVSGLGRDSITSS 143 (554)
Q Consensus 73 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 143 (554)
...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-.++.+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666677999999999999999999 999999999999877653 2445678899999999999999999
Q ss_pred HHHHHHHc
Q 045069 144 ALVTAYSK 151 (554)
Q Consensus 144 ~li~~~~~ 151 (554)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988764
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.82 E-value=0.0039 Score=50.21 Aligned_cols=133 Identities=12% Similarity=0.047 Sum_probs=94.8
Q ss_pred CCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-C---CChhhH
Q 045069 403 LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-P---VDPAVS 478 (554)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~---~~~~~~ 478 (554)
..|+...-..|..+....|++.+|...|++...- -+.-|......+.++....++..+|...++++-. + .++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666667777888888888888888887772 4455677777778888888888888888877532 2 244555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
..+.+.+...|....|+..|+.+....|. +......+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 66777888888888888888888887664 44444555677888877777665555543
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.82 E-value=0.00023 Score=59.51 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLPK----PV-DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
.+..+...+...|++++|...+++... ++ ....+..+..++...|++++|...++++++..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444555555555555555554321 11 1345666667777777777777777777777777777777777777
Q ss_pred HccCC--------------hhHHHHHHHHHhhcC
Q 045069 520 AEDGR--------------WDDVMKLRDDIVDNG 539 (554)
Q Consensus 520 ~~~g~--------------~~~A~~~~~~~~~~~ 539 (554)
...|+ +++|.+++++....+
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 77666 466666766666544
No 167
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.82 E-value=2.9e-05 Score=43.36 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCC
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQL 100 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 100 (554)
+||.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777777653
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.80 E-value=5.1e-05 Score=51.38 Aligned_cols=61 Identities=21% Similarity=0.145 Sum_probs=49.1
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
+...+...|++++|++.|+++. .+.+...+..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4567788888888888888864 255778888889999999999999999999999999874
No 169
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.79 E-value=0.00022 Score=52.66 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=46.1
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNS 491 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 491 (554)
...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.++... .+.+...+..+...+...|++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33444455555555555555431 22223444445555555555555555555432 122334555555566666666
Q ss_pred HHHHHHHHHHHhcCC
Q 045069 492 DLAEIVAHQLFENDP 506 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p 506 (554)
+.|...++++.+..|
T Consensus 85 ~~a~~~~~~~~~~~~ 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHccCC
Confidence 666666666655544
No 170
>PRK15331 chaperone protein SicA; Provisional
Probab=97.77 E-value=0.00073 Score=53.78 Aligned_cols=90 Identities=12% Similarity=-0.015 Sum_probs=74.3
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCCh
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRW 525 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 525 (554)
....-+...|++++|..+|.-+. .+.++..|..|..++...+++++|+..|..+...+++||......+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34444567888888888887753 4667777888888888889999999999999888888998889999999999999
Q ss_pred hHHHHHHHHHhh
Q 045069 526 DDVMKLRDDIVD 537 (554)
Q Consensus 526 ~~A~~~~~~~~~ 537 (554)
++|+..|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999998888776
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.76 E-value=0.00062 Score=56.89 Aligned_cols=128 Identities=13% Similarity=0.050 Sum_probs=85.5
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD--ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMV 450 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 450 (554)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3456666677778888888888888876433332 246777788888889999998888888763 333466666777
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 451 KLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
.++...|+...+..-++.. ...+++|.++++++.+.+|++ +..++..+...|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 7777777766655333221 123677888999998888877 333444444444
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.9e-05 Score=42.78 Aligned_cols=31 Identities=39% Similarity=0.654 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhCCChhhHHHHHHHHHHCCC
Q 045069 171 VLCNSMISGFAHCGFWDKSLQLFDWMLRLGK 201 (554)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 201 (554)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887663
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.73 E-value=0.0015 Score=64.37 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=40.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++..+..+.......|++++|...++++++.+| +...|..++.++...|+.++|.+.++++.+.++.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444555555555555666666666666666666 3556666666666666666666666666555443
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.73 E-value=0.00087 Score=65.96 Aligned_cols=141 Identities=12% Similarity=0.028 Sum_probs=97.4
Q ss_pred CCcchHHHHHHHHHc--C---CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcC--------CchHHHHHHHHHhHH
Q 045069 370 RNIITYNSVILGLGL--H---GFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHG--------GLVNDGREIFTRMTE 435 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 435 (554)
.+...|...+.+... . ++...|..+|++.++ ..|+.. .|..+..++... .+...+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 455666666665332 2 236788899999988 667754 454443333221 123344444444333
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 045069 436 EYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYK 512 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 512 (554)
....+.+...|..+.-.....|++++|...++++. ..|+...|..++..+...|+.++|.+.++++...+|.++..|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 11234456778888777778899999999999964 356788899999999999999999999999999999988643
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.72 E-value=0.00036 Score=58.09 Aligned_cols=93 Identities=13% Similarity=-0.038 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
...+..++..+...|++++|+..+++.. ..+ ...++..+...+...|++++|+..++++.+..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4455666667777788888888777753 111 23477888888899999999999999999999988888888888
Q ss_pred HHH-------ccCChhHHHHHHHHH
Q 045069 518 TYA-------EDGRWDDVMKLRDDI 535 (554)
Q Consensus 518 ~~~-------~~g~~~~A~~~~~~~ 535 (554)
++. ..|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 887 788887665555543
No 176
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.70 E-value=0.044 Score=50.97 Aligned_cols=233 Identities=9% Similarity=-0.016 Sum_probs=124.4
Q ss_pred HhCCCCCCHH-HHHHHHHHHhccCCcchhHHHHHHHHHhcCC----chHHHHHHHHHHHHccCChHHHHHHHhccC--CC
Q 045069 298 NMQGKKADPV-LIASVLAAAAKSANVWPGAVIHGYVIQHGFE----LSVMVSSALVDMYSKCGYLGLGIQVFETMS--ER 370 (554)
Q Consensus 298 ~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 370 (554)
...-+.|+.. ....+...+.. +.+++..+.+.+....+. --..++..++....+.++...|.+.+.-+. +|
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 3344455543 22333333333 444555554444333221 124566677777777888888877776554 34
Q ss_pred Ccch-------HHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHH---HHHhcCCc-hHHHHHHHHHhHH
Q 045069 371 NIIT-------YNSVILGLGL----HGFTYQAFEFFRDIIEKGLNPDESTFSALL---CACCHGGL-VNDGREIFTRMTE 435 (554)
Q Consensus 371 ~~~~-------~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~~~-~~~a~~~~~~~~~ 435 (554)
+... -..+-+..+. .-+...-+.+|+......+.... -...|+ .-+.+.|. -++|+++++.+.+
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3321 1112222221 11233344556665554332211 122222 23445555 7888888888876
Q ss_pred HhCCCCChhHHHHHHH----HHHhc---CChHHHH---HHHHhCCCC----CChhhHHHHHHH--HHhcCChHHHHHHHH
Q 045069 436 EYGIQAKTEHYIYMVK----LLGLA---GNLEEAY---SFIWSLPKP----VDPAVSGALLSC--CHIYGNSDLAEIVAH 499 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~----~~~~~---g~~~~A~---~~~~~~~~~----~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 499 (554)
- -+-|...-|.+.. .|..+ ..+.+-+ ..+++...+ .+...-+.|..+ +..+|++.++.-.-.
T Consensus 409 f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 F--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred h--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2 3334433333222 22221 1122222 122222222 233344555554 567899999988888
Q ss_pred HHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 500 QLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 500 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
-+.+..| ++.+|..++-++....+++||..++.++.
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 8888888 89999999999999999999999998764
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=0.00015 Score=52.14 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=40.9
Q ss_pred CCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHH
Q 045069 385 HGFTYQAFEFFRDIIEKGLN-PDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 462 (554)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..++++. + ..| +......+++++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 45666666666666663221 12333444566666666666666666662 1 112 223333445666666666666
Q ss_pred HHHHH
Q 045069 463 YSFIW 467 (554)
Q Consensus 463 ~~~~~ 467 (554)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.0025 Score=57.80 Aligned_cols=135 Identities=10% Similarity=0.069 Sum_probs=93.5
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA-CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 56677777777777888888888887532 2223334333333 33356777789999888885 56677778888888
Q ss_pred HHhcCChHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 453 LGLAGNLEEAYSFIWSLPK-PV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
+.+.|+.+.|..+|++... -+ ....|...+..-.+.|+.+.+..+.+++.+..|.+..+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 8888899999988888643 22 23478888888888899999999998888887775443
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.67 E-value=7.2e-05 Score=51.22 Aligned_cols=62 Identities=26% Similarity=0.418 Sum_probs=31.6
Q ss_pred hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 455 LAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 455 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
..|++++|+++++++. .|.+...+..++.+|.+.|++++|.++++++...+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3445555555555432 2334455555555555555555555555555555555554444443
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.67 E-value=0.068 Score=52.40 Aligned_cols=41 Identities=17% Similarity=0.251 Sum_probs=23.0
Q ss_pred CchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 045069 53 VLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNL 95 (554)
Q Consensus 53 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 95 (554)
.+++|.++.+.-| -+..|..+...-...-.++-|...|-+.
T Consensus 678 gledA~qfiEdnP--HprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNP--HPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred chHHHHHHHhcCC--chHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 4566666555543 3456766666555555555555555443
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.67 E-value=0.0049 Score=56.19 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=42.8
Q ss_pred HHhcC-CchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC-----C---CCh-hhHHHH
Q 045069 416 ACCHG-GLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----P---VDP-AVSGAL 481 (554)
Q Consensus 416 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---~~~-~~~~~l 481 (554)
.|... |++++|.+.|++..+-+..... ..++..++..+.+.|++++|.++|++... + .+. ..+...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 44444 5555555555555442111111 23344555556666666666666655320 1 011 112223
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 482 LSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+-++...||...|...+++....+|.
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33455566777777777777666553
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.62 E-value=0.00048 Score=64.89 Aligned_cols=78 Identities=14% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHH
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAY 149 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 149 (554)
..++++.|...|..+.++.+++.=...|+-||..|++.|+..+.+.|++..|.++..+|..++...+..|+..-+.+|
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555555555555555544444444444333333
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.61 E-value=0.004 Score=51.76 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=49.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD--ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMV 450 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 450 (554)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...+++.... .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3455566666677777777777777766422221 235677777777788888888888777652 223344455555
Q ss_pred HHHH
Q 045069 451 KLLG 454 (554)
Q Consensus 451 ~~~~ 454 (554)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 184
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.60 E-value=0.058 Score=49.61 Aligned_cols=109 Identities=14% Similarity=0.205 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
+.+..+.-|...|....|.++-++. .+ |+...|...+++|+..++|++-.++... +.+|..|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4555566777888888887776655 44 7888999999999999999998887654 34668899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
|+..+|..+..++ | +..-+..|.+.|+|.+|.+..-+
T Consensus 251 ~~~~eA~~yI~k~----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988872 1 14456788999999999877544
No 185
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.59 E-value=0.056 Score=49.24 Aligned_cols=244 Identities=14% Similarity=0.105 Sum_probs=152.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKKADPV--LIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGL 359 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 359 (554)
.-.|+++.|.+-|+.|... |... -...+.-...+.|+.+.|..+-+..-..- +.-.....+.+...+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3467777777777777532 1111 12223333345666676666666555443 2234566777888888888888
Q ss_pred HHHHHhccC-----CCCcch--HHHHHHHHH---cCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHH
Q 045069 360 GIQVFETMS-----ERNIIT--YNSVILGLG---LHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 360 A~~~~~~~~-----~~~~~~--~~~l~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~ 428 (554)
|+++++.-. ++++.- --.|+.+-+ -.-+...|...-.+..+ +.||.. .-..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 888887654 233321 112222211 12235556665555555 677765 34455677889999999999
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHH----HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 429 IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAY----SFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+++.+-+. .|.+.+...+ .+.+.|+..... +-+..|+ +.+......+..+....|++..|..-.+.+...
T Consensus 285 ilE~aWK~---ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKA---EPHPDIALLY--VRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhc---CCChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99999663 4555444332 234555543221 1122233 667777788888888999999999998888888
Q ss_pred CCCCchhHHHHHHHHHc-cCChhHHHHHHHHHhhc
Q 045069 505 DPRKGAYKVMLSNTYAE-DGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 505 ~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 538 (554)
.|. ..+|..|+++-.. .|+-.++...+-+.++.
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 775 4667777777655 49999999998887765
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.58 E-value=0.00085 Score=49.14 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=65.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhccC--------CcchhHHHHHHHHHhcCCchHHHHH
Q 045069 275 SALITGYSQQGDYGKALYYFRKLNMQGK-KADPVLIASVLAAAAKSA--------NVWPGAVIHGYVIQHGFELSVMVSS 345 (554)
Q Consensus 275 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (554)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +....+.+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 999999999999887653 2345667889999999999999999
Q ss_pred HHHHHHHc
Q 045069 346 ALVDMYSK 353 (554)
Q Consensus 346 ~l~~~~~~ 353 (554)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.57 E-value=0.0011 Score=62.43 Aligned_cols=117 Identities=11% Similarity=0.021 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh--cCCchHHHHHHHHHHHHccCChHHHHHHHhccCC----CCcchH
Q 045069 302 KKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH--GFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE----RNIITY 375 (554)
Q Consensus 302 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~ 375 (554)
.+.+...+..++..+....+++.+..++...... ....-..|..++++.|.+.|..+.++.+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444445555555555555555555555444432 1112222333555555555555555555443222 455555
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 376 NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 376 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
|.||..+.+.|++..|.++..+|...+...++.|+..-+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 5555555555555555555555444444444444444444433
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.56 E-value=0.0088 Score=54.52 Aligned_cols=113 Identities=12% Similarity=0.186 Sum_probs=54.2
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcC-CChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHH
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLH-GFTYQAFEFFRDIIEK----GLNPD--ESTFSALLCA 416 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~ 416 (554)
|...+..|...|++..|-+.+. .+...|... |+++.|++.|++..+. | .+. ...+..+...
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence 3334444555555555544443 234455555 6666666666665542 2 111 1134555566
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCC-----Chh-HHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQA-----KTE-HYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
+.+.|++++|.++|++.... .... +.. .+-..+-++...|+...|.+.+++.
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777777777777766552 1111 111 1222223444566777777666663
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.0012 Score=50.50 Aligned_cols=87 Identities=18% Similarity=0.097 Sum_probs=49.9
Q ss_pred HHHHHhcCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHc
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR---KGAYKVMLSNTYAE 521 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 521 (554)
..++-..|+.++|+.++++... ......+..+.+++...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3344455555555555554321 111234445666666677777777777777666665 44555555566667
Q ss_pred cCChhHHHHHHHHHh
Q 045069 522 DGRWDDVMKLRDDIV 536 (554)
Q Consensus 522 ~g~~~~A~~~~~~~~ 536 (554)
.|+.++|++.+-...
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 777777776665543
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.51 E-value=0.00085 Score=59.61 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCChhhHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK---TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGA 480 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 480 (554)
.|...+....+.|++++|...|+.+.+. .+-+ ...+..+...|...|++++|...|+.+.. +..+..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3555444445567777777777777664 2211 23455566666666666666666655431 122334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
++.++...|+.+.|..+|+++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 44555555666666666666666665544
No 191
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0026 Score=57.89 Aligned_cols=154 Identities=11% Similarity=0.013 Sum_probs=93.4
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HhcCCchHHHHHHHHHhHHHhCCCCChhHH------------
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA--CCHGGLVNDGREIFTRMTEEYGIQAKTEHY------------ 446 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------ 446 (554)
++.-.|++++|...--...+. .++. .+..++++ +.-.++.+.|...|++... +.|+...-
T Consensus 178 cl~~~~~~~~a~~ea~~ilkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 455567777776665555542 2221 22223332 3345666667666666543 34442211
Q ss_pred -HHHHHHHHhcCChHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 447 -IYMVKLLGLAGNLEEAYSFIWSLP------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 447 -~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
..-..-..+.|++.+|.+.+.+.. ..++...|.....+..+.|+.++|+.--+++.+++|.-...+..-+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112223456777777777777753 1344445555556666778888888888888888777777777777777
Q ss_pred HccCChhHHHHHHHHHhhcCC
Q 045069 520 AEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~~ 540 (554)
...++|++|.+.+++..+..-
T Consensus 332 l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 788888888888887766443
No 192
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.46 E-value=0.00012 Score=41.48 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=30.8
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHccCChhHHHH
Q 045069 498 AHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMK 530 (554)
Q Consensus 498 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 530 (554)
|+++++.+|+++..|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678999999999999999999999999999963
No 193
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.46 E-value=0.00033 Score=48.04 Aligned_cols=64 Identities=17% Similarity=0.140 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG-NSDLAEIVAHQLFENDP 506 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 506 (554)
+..|..+...+...|++++|+..|++.. .+.++..+..+..++...| ++++|++.++++++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566667777777777777777777653 3556677777777888888 68888888888888776
No 194
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.46 E-value=0.0014 Score=59.45 Aligned_cols=129 Identities=11% Similarity=0.060 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhCC--CCCChhhHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL-AGNLEEAYSFIWSLP--KPVDPAVSGALLSC 484 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 484 (554)
.+|..++...-+.+..+.|..+|++..+ .-..+..+|...+..-.+ .++.+.|.++|+... .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888888888999999999999975 334456667666666444 566666999999975 36788899999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+...|+.+.|..+|++++..-|.+. .+|...++.-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999876655 68888888889999999999999998875
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.46 E-value=0.00062 Score=63.54 Aligned_cols=66 Identities=9% Similarity=-0.119 Sum_probs=37.0
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh---HHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY---KVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.++..+..+..+|...|++++|+..|+++++.+|++... ++.++.+|...|+.++|++.++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555555555555555532 555555555555555555555555553
No 196
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.45 E-value=0.098 Score=48.67 Aligned_cols=449 Identities=11% Similarity=0.015 Sum_probs=224.5
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHhHHcC
Q 045069 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSV---FLWNSIIRAYALAHRFNDAKSLFKNLLRTQ 99 (554)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 99 (554)
.++.+.+..+ +.|..+|-.|+.-|...|..++.+++++++..|-+ .+|..-+++=...+++.....+|.+.....
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3555555443 66888999999999999999999999999987754 467777877777889999999999888764
Q ss_pred CCCCcccHHHHHHHhhcCCCh------hhHHHHHHHHHH-hcCCCCHh-HHHHH---HHHHHcCC------CHhHHHHhh
Q 045069 100 LKPDNFTYACITRACSENSDL------PGLRFVHGGAIV-SGLGRDSI-TSSAL---VTAYSKLS------LIDEAIKVF 162 (554)
Q Consensus 100 ~~p~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~~-~~~~l---i~~~~~~g------~~~~A~~~~ 162 (554)
. +...|..-+.-..+.+.. ...-+.++-... .+++|-.. .|+.. +...-..| ++|...+.+
T Consensus 107 l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 L--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred c--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4 455555555444333211 112233333322 23444322 23322 22222223 344444555
Q ss_pred cccCC-C---------CcchHHHHHHHHHhC-------CChhhHHHHHHHHHH--CCCCC----ChhhHHHHHHHcccCC
Q 045069 163 DGVSD-P---------DLVLCNSMISGFAHC-------GFWDKSLQLFDWMLR--LGKTP----DEYTLVGLISGLWEPS 219 (554)
Q Consensus 163 ~~~~~-~---------~~~~~~~li~~~~~~-------~~~~~a~~~~~~m~~--~~~~p----~~~~~~~ll~~~~~~~ 219 (554)
.++.. | |-..|..=+...... .-+-.|.+.++++.. .|... +..|++.+-+ ..
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r----~s 260 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR----TS 260 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc----cc
Confidence 55543 1 111111111111100 112234444444422 22221 1112221110 00
Q ss_pred ccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045069 220 LLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRK 296 (554)
Q Consensus 220 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 296 (554)
...-....+.-.+.++.....+...-|. -+++.. ..-....|--.-.-+...++-++|+.....
T Consensus 261 -~S~WlNwIkwE~en~l~L~~~~~~qRi~------------y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r 327 (660)
T COG5107 261 -DSNWLNWIKWEMENGLKLGGRPHEQRIH------------YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER 327 (660)
T ss_pred -cchhhhHhhHhhcCCcccCCCcHHHHHH------------HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 0000001111112222211111111110 011111 011222333223334556677777766654
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc---------cCChHHHHHHHhcc
Q 045069 297 LNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK---------CGYLGLGIQVFETM 367 (554)
Q Consensus 297 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~ 367 (554)
-.. ..|. .-..+-..+.-.++.+.+...|+...+. |.+-|.+ .|+++.-.+++-.-
T Consensus 328 g~~--~sps--L~~~lse~yel~nd~e~v~~~fdk~~q~-----------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 328 GIE--MSPS--LTMFLSEYYELVNDEEAVYGCFDKCTQD-----------LKRKYSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred ccc--CCCc--hheeHHHHHhhcccHHHHhhhHHHHHHH-----------HHHHHhhhhhhhhccccCCccccHHHHHHH
Confidence 321 1222 1111222233333333333333332211 1111110 12221111111111
Q ss_pred CCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHH
Q 045069 368 SERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHY 446 (554)
Q Consensus 368 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 446 (554)
...-...|...+..-.+....+.|..+|-++.+.| +.++...+++++..++ .|+...|..+|+--... ++.+..-.
T Consensus 393 ~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~ 469 (660)
T COG5107 393 INKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYK 469 (660)
T ss_pred HhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHH
Confidence 11233456667777777777888888888888887 5566677888887554 57778888888876553 33333333
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLPK----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+..+..+.+.++-+.|..+|+.... ..-...|..++.--...|+...+..+-+++.+..|....
T Consensus 470 ~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~ 537 (660)
T COG5107 470 EKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENL 537 (660)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhH
Confidence 5566677788888888888885432 223567777888778888888888888888888776543
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.40 E-value=0.029 Score=54.36 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=35.0
Q ss_pred cHHHHHHHhhcCCChhh--HHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcc
Q 045069 106 TYACITRACSENSDLPG--LRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 106 ~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
.++..-.+|.+.++..- ...-++++.+.|-.|+... +...++-.|.+.+|-++|.+
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 34455555655555433 3334566777787677654 34556777889888888764
No 198
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.39 E-value=0.0074 Score=47.96 Aligned_cols=93 Identities=11% Similarity=-0.053 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHh
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHI 487 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (554)
.-.+...+...|++++|.++|+-+..- -+-+..-|-.|.-++...|++++|+..+.... .+.++..+..+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 334444556778888888888777651 23345556667777777788888888877742 46677777788888888
Q ss_pred cCChHHHHHHHHHHHhc
Q 045069 488 YGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~ 504 (554)
.|+.+.|...|+.++..
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888888877766
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.38 E-value=0.031 Score=45.28 Aligned_cols=124 Identities=12% Similarity=-0.028 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CCcchHHH
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RNIITYNS 377 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 377 (554)
.|+...-..+..+....|+..+|...|++...--+..|....-.+.++....+++..|...++.+.+ ....+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444445555555555555555555554444444555555555555555555555555554442 12223333
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHH
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 428 (554)
+...+...|++.+|..-|+.... ..|+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 44445555555555555555555 34444433333333444444444433
No 200
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.38 E-value=0.00031 Score=49.65 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc----C---CCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFEN----D---PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.++..+...+...|++++|+..++++++. . |....++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566667777777777777777777755 1 22356778888999999999999999988764
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.37 E-value=0.00095 Score=55.51 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=72.9
Q ss_pred HHHhccC--CCCCcchHHHHHHHHHhc-----CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcC-------------
Q 045069 58 RILFDKT--PQRSVFLWNSIIRAYALA-----HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSEN------------- 117 (554)
Q Consensus 58 ~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 117 (554)
...|+.. ...+-.+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345667788888877644 56666777888888888888888999888886543
Q ss_pred ---CChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC
Q 045069 118 ---SDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 118 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (554)
.+-+-|.+++++|...|+-||.+++..|+..+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346678999999999999999999999998876654
No 202
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.19 Score=50.04 Aligned_cols=106 Identities=13% Similarity=0.060 Sum_probs=57.3
Q ss_pred HHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 045069 345 SALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424 (554)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 424 (554)
+--+.-+...|+..+|.++-.+.+-||-..|-.-+.+++..+++++-.++-+.+. .+.-|..++.+|.+.|+.+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~ 761 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKD 761 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHH
Confidence 3334445555666666666666666666666666666666666665444433221 1334555556666666666
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFI 466 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 466 (554)
+|.+++-+... . .-...+|.+.|++.+|.++-
T Consensus 762 EA~KYiprv~~---l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 762 EAKKYIPRVGG---L-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhhhhhccCC---h-------HHHHHHHHHhccHHHHHHHH
Confidence 66665554422 1 13445556666666665544
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.008 Score=51.34 Aligned_cols=136 Identities=14% Similarity=0.070 Sum_probs=82.6
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChh-----HHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTE-----HYIY 448 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~ 448 (554)
.-+.++..+.-.|.+.-....+.+.++...+.++.-...+.+.-.+.||.+.|...|++..+. .-..+.. +...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 344555666667777777777777777554455566667777777778888887777766553 2222222 2222
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
....|.-++++.+|...+.++.. +.++...+.-.-+..-.|+...|+...+.+++..|....
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l 321 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL 321 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence 33344555667777777766543 334445555555555667777777777777777665443
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.34 E-value=0.039 Score=51.20 Aligned_cols=165 Identities=21% Similarity=0.145 Sum_probs=103.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccCCC-Cc------chHHHHHHHHHc---CCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMSER-NI------ITYNSVILGLGL---HGFTYQAFEFFRDIIEKGLNPDESTFSA 412 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~------~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 412 (554)
+...++-+|-...+++..+++.+.+... +. ..-....-++.+ .|+.++|+.++..+....-.+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334555688888888888888887752 11 111233445556 7889999999988776667788888887
Q ss_pred HHHHHhc---------CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH----HHHHHH---Hh-C------
Q 045069 413 LLCACCH---------GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE----EAYSFI---WS-L------ 469 (554)
Q Consensus 413 ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~-~------ 469 (554)
+.+.|-. ....++|...|.+. +.+.|+...=-.++..+...|... +..++- .. +
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 7766532 23467788888776 345565333222233333333221 222222 11 1
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 470 PKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 470 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
....+-..+.+++.++.-.|+.++|.+.++++.+..|+.-.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 12344555677888899999999999999999999876554
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.32 E-value=0.0088 Score=45.74 Aligned_cols=89 Identities=15% Similarity=0.223 Sum_probs=65.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC---ChhHHHHHHHH
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDE--STFSALLCACCHGGLVNDGREIFTRMTEEYGIQA---KTEHYIYMVKL 452 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~ 452 (554)
+..++-..|+.++|+.+|++..+.|..... ..+..+...+...|++++|..++++.... .+. +......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHH
Confidence 455677789999999999999988876653 35677788888899999999999988774 222 23333444556
Q ss_pred HHhcCChHHHHHHHHh
Q 045069 453 LGLAGNLEEAYSFIWS 468 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~ 468 (554)
+...|+.++|++.+-.
T Consensus 85 L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 7788999998887744
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.31 E-value=0.00052 Score=41.85 Aligned_cols=42 Identities=24% Similarity=0.161 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
.++..+...|...|++++|++.++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788899999999999999999999999999998888764
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.28 E-value=0.16 Score=47.44 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=22.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNM 299 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 299 (554)
-..++..++...++.++..+|.+.+.-+..
T Consensus 297 li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 297 LIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 445677778888888888888887776543
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.27 E-value=0.0047 Score=54.97 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHH
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK-PVD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSN 517 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 517 (554)
|..-...+.+.|++++|...|+.... .|+ +..+..++.++...|++++|...|+.+++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333455677777777666532 222 3456666667777777777777777777665554 344555566
Q ss_pred HHHccCChhHHHHHHHHHhhcCC
Q 045069 518 TYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 518 ~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
++...|++++|.++++++++..+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCc
Confidence 66677777777777777766543
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.27 E-value=0.001 Score=46.19 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=53.0
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
..|.+.+++++|.++++.+. .|.++..+.....++...|++++|.+.++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 56778888888888888864 366777888888889999999999999999999999877765544
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.24 E-value=0.16 Score=46.51 Aligned_cols=273 Identities=13% Similarity=0.025 Sum_probs=125.3
Q ss_pred cCChHHHHHHHHHhHHcCCCCCcccHHHHHHHh--hcCCChhhHHHHHHHHHHhcCCCCHhHHH----HHHHHHHcCCCH
Q 045069 82 AHRFNDAKSLFKNLLRTQLKPDNFTYACITRAC--SENSDLPGLRFVHGGAIVSGLGRDSITSS----ALVTAYSKLSLI 155 (554)
Q Consensus 82 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~ 155 (554)
.|+-..|.++-.+-... +.-|......|+.+- .-.|+.+.|.+-|+.|.. |+++.. .|.-.--+.|..
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccH
Confidence 35555555554443322 333444444444432 244666666666666653 222211 111112345555
Q ss_pred hHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCC-CCCChh--hHHHHHHHccc---CCccchhhH
Q 045069 156 DEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLG-KTPDEY--TLVGLISGLWE---PSLLSVGQG 226 (554)
Q Consensus 156 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~--~~~~ll~~~~~---~~~~~~a~~ 226 (554)
+.|...-++.-. .-...+...+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-+. ..+...|..
T Consensus 171 eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 171 EAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 555555444332 223455556666666666666666665543321 223321 11122221111 112222222
Q ss_pred HHHHHHHhcCCCchhHH-HHHHHHHHhcCChhhHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC
Q 045069 227 IHGFCLKSSFDSYDYVS-SVLVSMYARCNCMNSAYHVFNSL--FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQ-GK 302 (554)
Q Consensus 227 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~ 302 (554)
.-... ..+.||..-- -.-..++.+.|++.++-.+++.+ .+|.+.++. +..+.+.|+. ++.-+++..+. .+
T Consensus 251 ~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~sl 324 (531)
T COG3898 251 DALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLESL 324 (531)
T ss_pred HHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHhc
Confidence 22222 2223332211 12234566777777777777766 223333332 2223444442 22222222211 23
Q ss_pred CCC-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc-cCChHHHHHHHhccC
Q 045069 303 KAD-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK-CGYLGLGIQVFETMS 368 (554)
Q Consensus 303 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 368 (554)
+|| ......+..+....|++..|..--+...+. .|....|..|.+.-.. .|+-.++...+.+..
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 443 345555666666777776666555544433 5666666666665544 377777777776654
No 211
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.17 E-value=0.02 Score=49.14 Aligned_cols=50 Identities=20% Similarity=0.106 Sum_probs=39.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCch---hHHHHHHHHHccCChhHHHH
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGA---YKVMLSNTYAEDGRWDDVMK 530 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 530 (554)
++..|.+.|.+..|..-++.+++..|+++. ....++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 556688999999999999999999998865 45667788999999885543
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.14 E-value=0.27 Score=48.54 Aligned_cols=207 Identities=13% Similarity=0.069 Sum_probs=109.3
Q ss_pred CCCChhHHHHHHHHHHhcCCchhHHHHhccCCC-CCcchHHHH----------HHHHHhcCChHHHHHHHHHhHHcCCCC
Q 045069 34 LLRDPFYATKLVRLYALNNVLPSARILFDKTPQ-RSVFLWNSI----------IRAYALAHRFNDAKSLFKNLLRTQLKP 102 (554)
Q Consensus 34 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l----------l~~~~~~~~~~~a~~~~~~m~~~~~~p 102 (554)
-.|.|..|..|.....+.-.++-|+..|-+... +.+..-..+ ...-+--|.+++|.++|-.|-+++
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh---
Confidence 368889999988888888888888888766441 222111111 011122477888888887776653
Q ss_pred CcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCC----CHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHH
Q 045069 103 DNFTYACITRACSENSDLPGLRFVHGGAIVSGLGR----DSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMIS 178 (554)
Q Consensus 103 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 178 (554)
..+....+.|++-...++++. -|-.. -...++.+...++....|++|.+.|..-.. -...+.
T Consensus 765 ------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----~e~~~e 830 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----TENQIE 830 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhHHH
Confidence 234455566666666555432 11111 123566666666666677777776654321 112344
Q ss_pred HHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhh
Q 045069 179 GFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS 258 (554)
Q Consensus 179 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (554)
++.+..++++-..+-..+ +-|....-.+...+.+.|.-++|.+.+- +.+.+ .+-+..+...++|.+
T Consensus 831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~L---r~s~p------kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYL---RRSLP------KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHH---hccCc------HHHHHHHHHHHHHHH
Confidence 444444444443333332 2333444445555555555555544332 22211 233445555566666
Q ss_pred HHHHHhhcCCCCh
Q 045069 259 AYHVFNSLFHPDL 271 (554)
Q Consensus 259 a~~~~~~~~~~~~ 271 (554)
|.++-++..-|.+
T Consensus 897 avelaq~~~l~qv 909 (1189)
T KOG2041|consen 897 AVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHhccchhH
Confidence 6666655544433
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.11 E-value=0.0056 Score=51.09 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=72.5
Q ss_pred HHHhhc--CCCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-------------
Q 045069 261 HVFNSL--FHPDLVTWSALITGYSQ-----QGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA------------- 320 (554)
Q Consensus 261 ~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g------------- 320 (554)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 44677777777777754 4667777788888999999999999999998887532
Q ss_pred ---CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCC
Q 045069 321 ---NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGY 356 (554)
Q Consensus 321 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 356 (554)
+-+-|..++++|...|+-||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 245677888888888888888888888888877553
No 214
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.03 E-value=0.21 Score=44.21 Aligned_cols=63 Identities=14% Similarity=0.026 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhccCCcchhHHHHHHHHHhc
Q 045069 274 WSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL--IASVLAAAAKSANVWPGAVIHGYVIQHG 336 (554)
Q Consensus 274 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 336 (554)
+-.....+...|++++|...|+++...-..+.... ...+..++.+.++++.|...+++..+..
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33344555667777777777777766432221111 1234455566666666666666666553
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.02 E-value=0.43 Score=47.60 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
+.+--+.-+...|+..+|.++-++.+ -||...|..-+.+++..++|++-+++-+..+ +|--|.-+..+|.+.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQ 757 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhc
Confidence 44455556677788888888777663 3788888888889999999998888776655 356677788889999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
|+.++|..++.+.-.. .....+|.+.|++.+|.++--+
T Consensus 758 ~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 9999998887664221 1566788888998888876443
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.01 E-value=0.0041 Score=56.55 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhH---HHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCChh
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMT---EEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--------KPVDPA 476 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~ 476 (554)
.|..|...|.-.|+++.|+...+.-. +.+|-+. ....+..+..++.-.|+++.|.+.++... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34555555555666776665544321 1122222 23455566666666777777777665521 122333
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFEN------DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.-.+|...|--..++++|+.+..+=+.+ .-.....+..|+.++...|..++|+.+.+.-++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4445566666666677777666654433 123345666677777777777777776665543
No 217
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.04 Score=50.52 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=8.4
Q ss_pred cCChHHHHHHHhccCC
Q 045069 354 CGYLGLGIQVFETMSE 369 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~ 369 (554)
.++.+.|...|++...
T Consensus 216 ~~~~~ka~~hf~qal~ 231 (486)
T KOG0550|consen 216 NDNADKAINHFQQALR 231 (486)
T ss_pred ccchHHHHHHHhhhhc
Confidence 4455555555555443
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.036 Score=47.56 Aligned_cols=138 Identities=10% Similarity=0.069 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHH-----H
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSS-----A 346 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 346 (554)
.+.+.++..+.-.|.+.-....+++.++...+.++.....+.+.-...|+.+.|...|+...+..-..+..+.+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 33455666677778888888888888887777778888888888888899999998888776543333333333 3
Q ss_pred HHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHH
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFS 411 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 411 (554)
....|.-++++..|...+.++.. .++...|.-.-+..-.|+..+|++.++.|.+ ..|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 33445566778888888877664 3444455555555557788888888888887 455554433
No 219
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.88 E-value=0.049 Score=41.33 Aligned_cols=141 Identities=14% Similarity=0.208 Sum_probs=90.3
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
+.-.|..++..++..+.... .+..-++.+|--....-+-+-..++++.+-+-+.+.|-. -...++..|...|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcch--
Confidence 34568888888888888763 345567777766666666677777777765432222211 123445555554443
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.......+.....+|+-+.-..++..+.+....+|.+...++.+|.+.|+..++.+++.++-+.|++
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344556677889999999999999998877788999999999999999999999999999999874
No 220
>PRK11906 transcriptional regulator; Provisional
Probab=96.83 E-value=0.02 Score=53.98 Aligned_cols=145 Identities=12% Similarity=0.100 Sum_probs=91.1
Q ss_pred ChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHhcC---------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh
Q 045069 387 FTYQAFEFFRDIIE-KGLNPDES-TFSALLCACCHG---------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL 455 (554)
Q Consensus 387 ~~~~a~~~~~~m~~-~g~~p~~~-~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 455 (554)
..+.|+.+|.+... ..+.|+.. .|..+..++... .+..+|.++-++..+ --+.|+.....+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 35667888888872 22666654 566666654322 234455666666655 234456666667776677
Q ss_pred cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH--HHHHHHccCChhHHHHH
Q 045069 456 AGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVM--LSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~ 531 (554)
.|+.+.|..+|++.. .|....+|......+.-.|+.++|.+.++++++..|.....-.. .++.|+.. ..++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 777888888887754 35566677777777777888888888888888887765543333 33345444 45666666
Q ss_pred HHH
Q 045069 532 RDD 534 (554)
Q Consensus 532 ~~~ 534 (554)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 543
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.061 Score=47.56 Aligned_cols=108 Identities=13% Similarity=0.050 Sum_probs=87.3
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhCC--CCCChhhH
Q 045069 404 NPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA---GNLEEAYSFIWSLP--KPVDPAVS 478 (554)
Q Consensus 404 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~--~~~~~~~~ 478 (554)
+-|...|..|...|...|+++.|...|.+..+- .++++..+..+..++... ....++..+++++. .+.+....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 345678999999999999999999999999873 556677777788776543 25668889999874 46788888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
..|...+...|++.+|...++.+++..|.+..-..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 88999999999999999999999999876654333
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.022 Score=52.26 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 521 (554)
.++..+.-++.+.+++.+|++..+... .+++...+..-..++...|+++.|...|+++++..|.|..+...|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 356778888999999999999998864 478888888889999999999999999999999999999999999877666
Q ss_pred cCChhH-HHHHHHHHhhc
Q 045069 522 DGRWDD-VMKLRDDIVDN 538 (554)
Q Consensus 522 ~g~~~~-A~~~~~~~~~~ 538 (554)
..++.+ ..++|..|...
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 555444 47888888753
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.75 E-value=0.091 Score=51.59 Aligned_cols=160 Identities=13% Similarity=0.125 Sum_probs=104.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----CCchHHHHHHHHHhHHHhCCCCChh
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDE-----STFSALLCACCH----GGLVNDGREIFTRMTEEYGIQAKTE 444 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 444 (554)
+..++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ..+.+.|.++++.+.++ . |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--y-P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--Y-PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--C-CCcH
Confidence 3344445555566666666666654422 11111 123344433333 45678888999998874 3 4544
Q ss_pred HH-HHHHHHHHhcCChHHHHHHHHhCCC------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch-hHHHHH
Q 045069 445 HY-IYMVKLLGLAGNLEEAYSFIWSLPK------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA-YKVMLS 516 (554)
Q Consensus 445 ~~-~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~ 516 (554)
.| -.-.+.+...|+.++|++.+++... +.....+..++.++....++++|...+.++.+...-+.. +++..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 44 3445566778999999999987532 233445667778888999999999999999998654444 444556
Q ss_pred HHHHccCCh-------hHHHHHHHHHhh
Q 045069 517 NTYAEDGRW-------DDVMKLRDDIVD 537 (554)
Q Consensus 517 ~~~~~~g~~-------~~A~~~~~~~~~ 537 (554)
-++...|+. ++|.++++++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 677888988 899999988765
No 224
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.71 E-value=0.005 Score=56.01 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHh-CC-------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------CCCCc
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWS-LP-------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN------DPRKG 509 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~p~~~ 509 (554)
..|..|...|.-.|+++.|+..-+. +. .......+..+..++.-.|+++.|.+.|+....+ .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3456666777778999999876543 11 1223456777888999999999999999987655 23345
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
...+.|+..|.-..++++|+.+.++=+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 667788999999999999999987743
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.15 Score=45.00 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=75.8
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHH---HHHHHHhcCChH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGA---LLSCCHIYGNSD 492 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 492 (554)
.....|++.+|..+|+..... .+-+....-.++++|...|+.+.|..++..++.......+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345677777787777777663 334456666777778888888888888877764333333322 222333333333
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 493 LAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 493 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+... +++-...+|+|...-..++..+...|+.++|.+.+-.+++.+
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3322 233334578888888888888888888888887777776653
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.69 E-value=0.045 Score=42.77 Aligned_cols=89 Identities=16% Similarity=0.067 Sum_probs=59.4
Q ss_pred HHHHhcCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch---hHHHHHHHHHcc
Q 045069 451 KLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA---YKVMLSNTYAED 522 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~ 522 (554)
....+.|++++|.+.|+.+.. +-....-..++.++.+.++++.|...+++.++++|.++. ++...+-++.+.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 334466777777777777642 223445566778888888888888888888888876653 444444444444
Q ss_pred CC---------------hhHHHHHHHHHhhcC
Q 045069 523 GR---------------WDDVMKLRDDIVDNG 539 (554)
Q Consensus 523 g~---------------~~~A~~~~~~~~~~~ 539 (554)
.. ..+|..-|+++++.-
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 44 667777777777653
No 227
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.67 E-value=0.027 Score=43.56 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH
Q 045069 402 GLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLG 454 (554)
Q Consensus 402 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 454 (554)
...|+..+..+++.+|+..+++..|.++.+...+.++++.+..+|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788888899999999999999999999999888888888888888777543
No 228
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.64 E-value=0.38 Score=41.36 Aligned_cols=176 Identities=14% Similarity=0.009 Sum_probs=74.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGK--KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (554)
.....+...|++++|...|+++...-. +--......+..++.+.|+++.|...++...+.-......-+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 334455666777777777777665421 112223444555666666666666666666554322111111111111111
Q ss_pred cCChHHHHHHHhccCCCCc-------chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 045069 354 CGYLGLGIQVFETMSERNI-------ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 426 (554)
........ ....|. ..+..++.-|-...-..+|...+..+.+. + - ..-..+..-|.+.|.+..|
T Consensus 90 ~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-l--a-~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 90 YKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-L--A-EHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-H--H-HHHHHHHHHHHCTT-HHHH
T ss_pred HHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-H--H-HHHHHHHHHHHHcccHHHH
Confidence 00000000 000110 12333444444444444554444443331 0 0 0111244556677777777
Q ss_pred HHHHHHhHHHhCCCCC---hhHHHHHHHHHHhcCChHHH
Q 045069 427 REIFTRMTEEYGIQAK---TEHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 462 (554)
..-++.+.+. .+-+ ......++.+|.+.|..+.|
T Consensus 161 ~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 161 IIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777664 2222 23344555666666665533
No 229
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.0094 Score=54.58 Aligned_cols=68 Identities=13% Similarity=0.018 Sum_probs=62.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..++..+..++.+.+++..|++...+.++.+|+|.-.++.-+.+|...|+++.|+..|+++++..+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc
Confidence 34677788899999999999999999999999999999999999999999999999999999876544
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.58 E-value=0.011 Score=47.86 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh-----hcCCccCC
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV-----DNGLRKEA 544 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 544 (554)
....++..+...|+++.|...+++++..+|-+...+..++.+|...|+..+|.++|+++. +.|+.|++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455567778889999999999999999999999999999999999999999999999875 34665554
No 231
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.48 E-value=0.029 Score=48.85 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=59.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhCC----C-CCChhhHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK---TEHYIYMVKLLGLAGNLEEAYSFIWSLP----K-PVDPAVSGA 480 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~-~~~~~~~~~ 480 (554)
.|+.-+. +.+.|++..|...|....++ .+-+ ...+-.|.+++...|++++|..+|..+. . +.-+..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4554443 34556677777777777763 3332 3344456666666666666666655442 1 234455556
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
|..+....|+.++|...|+++.+..|..+..
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666666677777777777777776665543
No 232
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.38 E-value=0.11 Score=49.16 Aligned_cols=145 Identities=19% Similarity=0.136 Sum_probs=76.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH--HhcCChHH
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL--GLAGNLEE 461 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 461 (554)
+..+.+.-++.-++..+ +.||..+.-.++ +-.......++++++++..+. +-. .+.+.. ...|..-+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE~-------~lg~s~~~~~~g~~~e 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GEA-------SLGKSQFLQHHGHFWE 248 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HHH-------hhchhhhhhcccchhh
Confidence 44455666666666666 667665433222 223455567788888777653 110 000000 01111111
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR--KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.+.+-...+-..+-..+..++.+.|+.++|++.++++.+..|. +..+...|++++...+++.++..++.+--+..
T Consensus 249 ---~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 249 ---AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred ---hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111011222333455666667777777777777777766554 34566677777777777777777777765443
Q ss_pred Ccc
Q 045069 540 LRK 542 (554)
Q Consensus 540 ~~~ 542 (554)
..+
T Consensus 326 lpk 328 (539)
T PF04184_consen 326 LPK 328 (539)
T ss_pred CCc
Confidence 333
No 233
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.33 E-value=1.5 Score=44.93 Aligned_cols=260 Identities=13% Similarity=0.039 Sum_probs=132.2
Q ss_pred HHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcc
Q 045069 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVW 323 (554)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 323 (554)
...+..+.+.+++....+++.. .+.+...-.....+....|+.++|....+.+=..| ...+.....++..+.+.|.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCC
Confidence 3344445556666666663322 23444445556666777777766666666554444 223445566666666555443
Q ss_pred hhHH--HHHHHHHhcC-----------Cch-HHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHH--cCCC
Q 045069 324 PGAV--IHGYVIQHGF-----------ELS-VMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLG--LHGF 387 (554)
Q Consensus 324 ~a~~--~~~~~~~~~~-----------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 387 (554)
.... -+..+...|- .++ ......++..+. +...+...+.... ++...-..++.++. ...+
T Consensus 181 ~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 181 PLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhC
Confidence 3221 1111122111 111 111222222222 2333333333221 22211111222222 2455
Q ss_pred hHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 045069 388 TYQAFEFFRDIIEKG-LNPDES--TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYS 464 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 464 (554)
.+.|...+....... +.+... ....+.......+...+|...++..... ..+......-++...+.++++.+..
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHHHH
Confidence 688888888775433 333322 3344443333433356677777665432 2344555556666668899999888
Q ss_pred HHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 465 FIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 465 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
.+..|.. .....-..-+.+++...|+.++|...|+++.. + ..+|..|+
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LA 383 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVA 383 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHH
Confidence 8888863 22334445566776778999999999998743 2 34665653
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.1 Score=46.52 Aligned_cols=158 Identities=12% Similarity=0.027 Sum_probs=70.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHH----HHHHHHhcCChH
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIY----MVKLLGLAGNLE 460 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~ 460 (554)
.|+..+|...++++.+. .+.|..++...=.+|...|+...-...++++.. ...++...|.. +.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444555555555543 333344444444555555555555555555544 22333333322 222334455555
Q ss_pred HHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC----chhHHHHHHHHHccCChhHHHHHHHH
Q 045069 461 EAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK----GAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 461 ~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
+|.+.-++... +.|.-...++...+...|+.+++.++..+-...-... ..-|-..+-.+...+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 55555555432 3333333444444455555555555544432221100 01111222244445556666666555
Q ss_pred HhhcCCccCCC
Q 045069 535 IVDNGLRKEAG 545 (554)
Q Consensus 535 ~~~~~~~~~~~ 545 (554)
-+-..+.++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 54444444444
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.30 E-value=0.0054 Score=43.19 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
.++..+..++...|++++|++.++++.+
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455566666666666666666666654
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.29 E-value=0.035 Score=41.96 Aligned_cols=84 Identities=14% Similarity=0.045 Sum_probs=36.0
Q ss_pred HhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCc---hhHHHHHHHHHccCChhH
Q 045069 454 GLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN-DPRKG---AYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~---~~~~~l~~~~~~~g~~~~ 527 (554)
...|+.++|++.|.+.. .+..+..|+.-..++.-+|+.++|+.-++++++. .|... ..|..-+.+|...|+-+.
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred HhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 33444444444444422 1334444444444444444444444444444444 22211 122333334444555555
Q ss_pred HHHHHHHHhh
Q 045069 528 VMKLRDDIVD 537 (554)
Q Consensus 528 A~~~~~~~~~ 537 (554)
|..-|+..-+
T Consensus 134 AR~DFe~AA~ 143 (175)
T KOG4555|consen 134 ARADFEAAAQ 143 (175)
T ss_pred HHHhHHHHHH
Confidence 5554444443
No 237
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.28 E-value=0.031 Score=48.46 Aligned_cols=113 Identities=11% Similarity=0.073 Sum_probs=84.8
Q ss_pred chhHHHHhccCC--CCCcchHHHHHHHHHhc-----CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCC--------
Q 045069 54 LPSARILFDKTP--QRSVFLWNSIIRAYALA-----HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENS-------- 118 (554)
Q Consensus 54 ~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-------- 118 (554)
+-..++.|...+ +.|-.+|-+.+..+... +..+=....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ 129 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQ 129 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHH
Confidence 334455666666 56777888888877544 556667778899999999999999999999876543
Q ss_pred --------ChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH-hHHHHhhcccC
Q 045069 119 --------DLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI-DEAIKVFDGVS 166 (554)
Q Consensus 119 --------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~ 166 (554)
+-+-+..++++|...|+.||.++-..|+.++.+.+.. .+..++.-.|+
T Consensus 130 ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 130 KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345788999999999999999999999999887753 33444444444
No 238
>PRK15331 chaperone protein SicA; Provisional
Probab=96.27 E-value=0.26 Score=39.62 Aligned_cols=92 Identities=9% Similarity=-0.026 Sum_probs=72.8
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL--PKPVDPAVSGALLSCCHIYGN 490 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 490 (554)
...-+...|++++|..+|.-+..- -+-+..-+..|..++...+++++|+..+... ....|+........++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 334456789999999999988762 2344566778888888999999999998774 335677777788899999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q 045069 491 SDLAEIVAHQLFENDPR 507 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~ 507 (554)
.+.|...|+.+++ .|.
T Consensus 121 ~~~A~~~f~~a~~-~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNE-RTE 136 (165)
T ss_pred HHHHHHHHHHHHh-Ccc
Confidence 9999999999888 344
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=96.25 E-value=0.24 Score=46.94 Aligned_cols=142 Identities=11% Similarity=-0.003 Sum_probs=86.0
Q ss_pred ChHHHHHHHhccC---CCC---cchHHHHHHHHHc---------CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 045069 356 YLGLGIQVFETMS---ERN---IITYNSVILGLGL---------HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHG 420 (554)
Q Consensus 356 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 420 (554)
..+.|..+|.+.. ..| ...|..+..++.. .....+|.++.++..+.+ .-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567777888776 333 3345555444332 123456677777777743 33566666677766777
Q ss_pred CchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHh-CCCCCChh---hHHHHHHHHHhcCChHHHH
Q 045069 421 GLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWS-LPKPVDPA---VSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 421 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~~~A~ 495 (554)
++++.|..+|++... +.|+ ..+|........-+|+.++|.+.+++ +...|... .....+..|+. ...+.|+
T Consensus 352 ~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 778888888888865 5565 55566666666778889999888888 44333322 22222333443 3456666
Q ss_pred HHHHHHH
Q 045069 496 IVAHQLF 502 (554)
Q Consensus 496 ~~~~~~~ 502 (554)
.+|-+-.
T Consensus 428 ~~~~~~~ 434 (458)
T PRK11906 428 KLYYKET 434 (458)
T ss_pred HHHhhcc
Confidence 6665433
No 240
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.24 E-value=0.48 Score=44.22 Aligned_cols=164 Identities=7% Similarity=-0.047 Sum_probs=105.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhc---CCchHHHHHHHHHhHHHhCCCCChhHHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKG---LNPDESTFSALLCACCH---GGLVNDGREIFTRMTEEYGIQAKTEHYIY 448 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 448 (554)
.-.++-+|....+++..+++++.+.... +.-....-....-++.+ .|+.++|++++..+... .-.+++.++..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 3355667999999999999999998741 11112222334456667 89999999999996664 77888999999
Q ss_pred HHHHHHh---------cCChHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChH----HHHHHH----HHHHhc----CC
Q 045069 449 MVKLLGL---------AGNLEEAYSFIWSLP-KPVDPAVSGALLSCCHIYGNSD----LAEIVA----HQLFEN----DP 506 (554)
Q Consensus 449 l~~~~~~---------~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~----~A~~~~----~~~~~~----~p 506 (554)
+++.|.. ....++|...|.+.- ..++...=-.++..+...|... +..++- ....+. .-
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 9888743 224678888887742 2333222222222233333211 222222 111111 23
Q ss_pred CCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 507 RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 507 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.+-+.+..++++..-.|++++|.+..++|.+..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 455677788899999999999999999998763
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.48 Score=41.97 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=100.0
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (554)
......|++.+|...|+...... .-+...-..+..++...|+.+.|..++..+... --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 34567788888888888887742 223345667788888889998888888887542 1111122222334555555555
Q ss_pred HHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 460 EEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND--PRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 460 ~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.+...+-.+... +.|...-..+...+...|+.+.|.+.+=.+++.+ -.+......+..++.-.|.-+.+...++
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 555555555433 4477777788888888999999988888777774 4667777888888887775554444333
No 242
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.19 E-value=0.7 Score=39.61 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCchhHHHHHHHHHccCChhHHHHHH
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFEN----DPRKGAYKVMLSNTYAEDGRWDDVMKLR 532 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 532 (554)
+...+-.+.-..|+..|+..++..-+. .|++......|+.+| ..|+.+++..++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 334444445555666666666654443 344555555554333 345555555443
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.16 E-value=0.066 Score=43.23 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHH----HhCCCCChhHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTE----EYGIQAKTEHY 446 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 446 (554)
...++..+...|++++|..+.+.+... .| +...|..++.+|...|+...|.++|+++.+ .+|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 334555666777777777777777773 34 445777778888888888888777776643 25777776554
No 244
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.13 E-value=0.06 Score=48.51 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=25.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhccCCcchhHHH
Q 045069 281 YSQQGDYGKALYYFRKLNMQG--KKADPVLIASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~ 328 (554)
+....+.++|+..+.+-...- ..-.-.+|..+..+.++.|.+++++..
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 344566777777776654321 111223455555666666665555443
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.042 Score=47.86 Aligned_cols=97 Identities=14% Similarity=0.099 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLS 516 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 516 (554)
.|+.-+. +.+.|++.+|...|..-.. .-.+..+..|..++...|+++.|..+|..+.+..|++ +..+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4555444 4467889999998877531 3345566679999999999999999999999997655 56788899
Q ss_pred HHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 517 NTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+..+.|+.++|...|+++.+.=+..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999998865443
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.088 Score=46.97 Aligned_cols=116 Identities=11% Similarity=-0.011 Sum_probs=96.8
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhH----HHHHHHHHhcCCh
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVS----GALLSCCHIYGNS 491 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~~l~~~~~~~~~~ 491 (554)
...|+..+|-..++++.+ ..|.|...+...-+++.-.|+.+.-...++++.. .++.+.| ..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 356888888889999988 5888888888888899999999888888888642 3444333 3455566788999
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 492 DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
++|++..+++.+.+|.+......++.++...|+++++.+.+.+-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999999999999999999999998764
No 247
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=2.3 Score=43.44 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=37.2
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
-++..+....+.+++..+.+..... ++..|..++..+++.+..+.-.+...+.++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~-~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE-DPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc-ChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3555666777788888887777633 788888888888887765555444444433
No 248
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.92 E-value=1.9 Score=42.25 Aligned_cols=408 Identities=10% Similarity=0.012 Sum_probs=207.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCccc-HHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHH
Q 045069 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFT-YACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALV 146 (554)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 146 (554)
+...|..+|..--...+.+.+..++..++.. .|.... |......=.+.|..+.+.++|+..+. |++.....|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4456777776655555566777777777754 454442 33334444577888888888888765 3556666666655
Q ss_pred HHHH-cCCCHhHHHHhhcccCC------CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHc---c
Q 045069 147 TAYS-KLSLIDEAIKVFDGVSD------PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGL---W 216 (554)
Q Consensus 147 ~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---~ 216 (554)
.-+. ..|+.+...+.|+.... .....|...|..-...+++.....+|++..+... ..|+.....+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHH
Confidence 5444 35677777777776654 4555677788777788888888888888876321 1111111111 1
Q ss_pred cCC------ccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcC-ChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHH
Q 045069 217 EPS------LLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCN-CMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGK 289 (554)
Q Consensus 217 ~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 289 (554)
+.. ..+.+.++-....... .-...+ ..+......+....|. +..++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s--------------~~l~~ 249 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPS--------------KSLTE 249 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCcc--------------chhhH
Confidence 110 1111111111000000 000000 0011111111111110 00111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh-------cCCchHHHHHHHHHHHHccCChHHHHH
Q 045069 290 ALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH-------GFELSVMVSSALVDMYSKCGYLGLGIQ 362 (554)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~ 362 (554)
+...+.+.... -. ..+...-........++.-.+. -..+...+|...+.--.+.|+.+.+.-
T Consensus 250 ~~~~l~~~~~~----~~-------~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 250 EKTILKRIVSI----HE-------KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred HHHHHHHHHHH----HH-------HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 11111100000 00 0000000000001111111110 012345666777777777788888877
Q ss_pred HHhccCCCC---cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCC
Q 045069 363 VFETMSERN---IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439 (554)
Q Consensus 363 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 439 (554)
+|+...-|- ...|-..+.-....|+.+-|..++....+--++-.+.+-..-..-+...|+++.|..+++.+.+. .
T Consensus 319 l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~ 396 (577)
T KOG1258|consen 319 LFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y 396 (577)
T ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C
Confidence 777765432 22344444444444778877777776665433222222211122234567889999999888874 4
Q ss_pred CCC-hhHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCChhhHHHHHHH-----HHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 440 QAK-TEHYIYMVKLLGLAGNLEEAY---SFIWSLP-KPVDPAVSGALLSC-----CHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 440 ~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
|+ ...-..-+....+.|..+.+. +++.... ...+..+...+..- +.-.++.+.|..++.++.+..|++.
T Consensus 397 -pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k 475 (577)
T KOG1258|consen 397 -PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCK 475 (577)
T ss_pred -CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccH
Confidence 44 333334455566778877777 4444432 22333333333222 3345788899999999999999998
Q ss_pred hhHHHHHHHHHccC
Q 045069 510 AYKVMLSNTYAEDG 523 (554)
Q Consensus 510 ~~~~~l~~~~~~~g 523 (554)
..+..+.......+
T Consensus 476 ~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 476 VLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHHhCC
Confidence 88888887776655
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.89 E-value=1.1 Score=39.32 Aligned_cols=180 Identities=15% Similarity=0.078 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHh-cCCchHHHHHHHHHHHHccCChHHHHH
Q 045069 285 GDYGKALYYFRKLNMQGKKA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQH-GFELSVMVSSALVDMYSKCGYLGLGIQ 362 (554)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 362 (554)
+....+...+.......... ....+......+...+....+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444443332111 2344444445555555555555555444432 223333344444444444455555555
Q ss_pred HHhccCC--CCc-chHHHHHH-HHHcCCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHhcCCchHHHHHHHHHhH
Q 045069 363 VFETMSE--RNI-ITYNSVIL-GLGLHGFTYQAFEFFRDIIEKGLNP----DESTFSALLCACCHGGLVNDGREIFTRMT 434 (554)
Q Consensus 363 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 434 (554)
.+..... ++. ........ .+...|+++.|...+.+... ..| ....+......+...++.+.+...+....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 5544432 111 11222222 34455555555555555433 222 11122222222334444555555554444
Q ss_pred HHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 435 EEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 435 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
.. .+. ....+..+...+...++++.|...+..
T Consensus 195 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 195 KL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227 (291)
T ss_pred hh--CcccchHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 31 222 233444444444444444444444444
No 250
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.71 E-value=1.3 Score=38.63 Aligned_cols=168 Identities=15% Similarity=0.077 Sum_probs=93.5
Q ss_pred HccCChHHHHHHHhccCCCC------cchHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhc---C-
Q 045069 352 SKCGYLGLGIQVFETMSERN------IITYNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDESTFSALLCACCH---G- 420 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~---~- 420 (554)
.+.|++++|.+.|+.+.+.. ..+--.++.++-+.++++.|+..+++....- -.|| ..|...|.+++. .
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 45578888888888776421 1234445666777888888888888877732 2222 234444444332 1
Q ss_pred ---Cch---HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHH
Q 045069 421 ---GLV---NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 421 ---~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
.|. ..|..-|++++++ .|-+..+ ..|..-+..+.. .-...-..+..-|.+.|.+..|
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya--------------~dA~~~i~~~~d-~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR--YPNSRYA--------------PDAKARIVKLND-ALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH--CCCCcch--------------hhHHHHHHHHHH-HHHHHHHHHHHHHHHhcChHHH
Confidence 222 2344444444443 2222111 111111100000 0000112355668888888889
Q ss_pred HHHHHHHHhcCCCCch---hHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 495 EIVAHQLFENDPRKGA---YKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
..-++++++..|+... .+..+.++|...|..++|.+.-+-+..
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999888766554 445566788889999988887655543
No 251
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.65 E-value=1.5 Score=44.72 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=60.2
Q ss_pred HhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHH
Q 045069 49 ALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128 (554)
Q Consensus 49 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 128 (554)
.+.|++++|...+-+-..--- =..++.-|....+...-...++.+.+.|+. +...-..|+.+|.+.++.++..++.+
T Consensus 379 y~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 379 YGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHh
Confidence 344555555555443221000 012344444555555555555555555543 44444555666666666555555443
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHH
Q 045069 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196 (554)
Q Consensus 129 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 196 (554)
... .|.. ..-....+..+.+.+-.++|..+-..... +......+ +-..+++++|++.+..+
T Consensus 456 ~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 456 KCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred cCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 322 1110 00112233344444444444443332221 12222222 22346666666666654
No 252
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.63 E-value=0.085 Score=49.78 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-h---hhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVD-P---AVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...++.+..+|.+.|++++|+..|++.. ..|+ . .+|..+..+|...|+.++|++.++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344444444444444444444444421 1222 1 12444555555555555555555555543
No 253
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.62 E-value=0.034 Score=31.33 Aligned_cols=31 Identities=23% Similarity=0.047 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
.+..+..++...|++++|++.++++++.+|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3444555555556666666666666555554
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.45 E-value=0.19 Score=38.87 Aligned_cols=50 Identities=4% Similarity=0.099 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHhccCCcchhHHHHHHHHH-hcCCchHHHHHHHHHHH
Q 045069 302 KKADPVLIASVLAAAAKSANVWPGAVIHGYVIQ-HGFELSVMVSSALVDMY 351 (554)
Q Consensus 302 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 351 (554)
..|+..+..+++.+|+..|++..|.++.+...+ -+++.+..+|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456666666666666666666666666665543 24555555555555433
No 255
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.38 E-value=0.034 Score=31.40 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=18.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+|..++.++...|++++|+..++++++.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555666666666666666666666554
No 256
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.37 E-value=4.8 Score=43.05 Aligned_cols=153 Identities=13% Similarity=0.159 Sum_probs=79.5
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhcCCchHHHHHHH
Q 045069 355 GYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDEST----FSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 355 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~ 430 (554)
+++++|+.-+..+. ...|.-.+..-.++|.+.+|+.++ .|+... |......+.....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34555555554443 222333333344455555555443 445444 333444445566666666666
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVS--GALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
+..-+ ...-+.+|..+|+|.+|+.+..++....+...- ..|+.-+...++.-+|-++..+.... |
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-~-- 1029 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-P-- 1029 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-H--
Confidence 65532 133456667777777777777766543333322 45556666666666666666554432 1
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
......|++.-.|++|+++....
T Consensus 1030 ----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 11223455555666666555443
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.23 E-value=0.075 Score=40.25 Aligned_cols=57 Identities=11% Similarity=-0.010 Sum_probs=53.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 482 LSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
..+....|+.+.|++.|.+++..-|.+++.|..-+.++.-+|+.++|+.-+++.++.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 445778999999999999999999999999999999999999999999999999873
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.14 E-value=0.23 Score=38.89 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=56.5
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhhcCCccC
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 543 (554)
+..+..-.....+.|++++|.+.|+.+....|-.+ .....|+.+|.+.|++++|...++++++.++..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 33444445556788999999999999999976554 5777899999999999999999999999886544
No 259
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.12 E-value=2.3 Score=40.36 Aligned_cols=149 Identities=10% Similarity=-0.097 Sum_probs=78.7
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC--hh
Q 045069 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP---DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK--TE 444 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 444 (554)
....+|..++..+.+.|.++.|...+.++...+..+ .+.....-+..+...|+..+|...++..... ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777788888888888888888877643111 2223333344556678888888888777662 12111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCChhhHHHHHHHHHhc------CChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSF-IWSLPKPVDPAVSGALLSCCHIY------GNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
....+...+.. ..+..... ........-...+..+..-+... ++.+.+...|+++.+..|.....+..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000112233333333333 78888999999999999988888887776
Q ss_pred HHHc
Q 045069 518 TYAE 521 (554)
Q Consensus 518 ~~~~ 521 (554)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6554
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.09 E-value=0.23 Score=43.35 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=75.3
Q ss_pred HHHHhccC--CCCcchHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-----------
Q 045069 361 IQVFETMS--ERNIITYNSVILGLGL-----HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGL----------- 422 (554)
Q Consensus 361 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----------- 422 (554)
...|.... +.|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 4667777777777654 35677777788899999999999999999988765431
Q ss_pred -----hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 045069 423 -----VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 423 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (554)
-+-++.++++|... |+.||..+-..+++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 23478899999984 9999999999999999887754
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.99 E-value=2.3 Score=37.24 Aligned_cols=195 Identities=19% Similarity=0.135 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccC-----CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMS-----ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC- 415 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 415 (554)
..+......+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 334444444555555555555444432 12223344444444455555555555555554322221 11111112
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CC-ChhhHHHHHHHHHhcCC
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGI--QAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PV-DPAVSGALLSCCHIYGN 490 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~ 490 (554)
.+...|+++.|...+++.... .. ......+......+...++.+++...+.+... +. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 455555555555555555321 11 01222233333334455555555555555432 22 23444555555555555
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 491 SDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
++.|...+.......|.....+..++..+...|.++++...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555555555554444444444444445555555555555443
No 262
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.97 E-value=1.5 Score=35.02 Aligned_cols=112 Identities=8% Similarity=0.096 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYS 150 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 150 (554)
.-..++..+...+.+......++.+...+. .+...++.++..+++.+ .......+.. ..+.......+..|.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 344566666666677777777777766653 45556666777776543 2222233221 122333344566666
Q ss_pred cCCCHhHHHHhhcccCCCCcchHHHHHHHHHhC-CChhhHHHHHHH
Q 045069 151 KLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHC-GFWDKSLQLFDW 195 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~ 195 (554)
+.+.++++.-++.++.. |...+..+... ++++.|.+++.+
T Consensus 81 ~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 81 KAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHh
Confidence 66666666666665532 22333333333 566666665554
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.92 E-value=1.5 Score=34.89 Aligned_cols=127 Identities=9% Similarity=-0.032 Sum_probs=71.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
....++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. . ++.......++.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c 79 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLC 79 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHH
Confidence 34456666666677777777777777765 245556777777776543 3333344432 1 1222233456666
Q ss_pred HhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 454 GLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY-GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
.+.+.++++.-++.++.. +...+..+... ++.+.|.+++++ +.++..|..++..+.
T Consensus 80 ~~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 80 EKAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 667777777777766542 22222333333 677777776665 335556666555443
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.90 E-value=0.051 Score=31.20 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=21.0
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
.+..|+.+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678899999999999999999855
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.87 E-value=0.057 Score=32.74 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 509 GAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 509 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
|..+..++.+|.+.|++++|+++++++++..+..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3567889999999999999999999999986544
No 266
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.51 E-value=0.15 Score=41.91 Aligned_cols=103 Identities=11% Similarity=0.012 Sum_probs=70.7
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHH
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAK-----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCH 486 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~ 486 (554)
..-+.+.|++++|..-|...... +++. ...|..-..++.+.+.++.|++-..+... +.....+..-..+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 44577889999999999888773 4443 23455555667788888888877766542 223333334445677
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
+...++.|++-|+++.+.+|.........+.+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 77888888888888888888777666555444
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.44 E-value=0.88 Score=44.17 Aligned_cols=131 Identities=11% Similarity=-0.000 Sum_probs=75.3
Q ss_pred HHHHhcCChHHHHHHHH--HhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC
Q 045069 77 RAYALAHRFNDAKSLFK--NLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 77 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (554)
+...-.++++++..... .+... ++ ..-.+.++..+-+.|..+.|+++..+- . .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN-IP--KDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhccc-CC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCC
Confidence 34456677877766654 22211 22 344677777788888888888765332 1 12455567888
Q ss_pred HhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHH
Q 045069 155 IDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLK 233 (554)
Q Consensus 155 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 233 (554)
++.|.++.++.. +...|..|.....+.|+++-|.+.|.+..+ |..++-.+...|+.+.-.++.+....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 888888887775 556888888888888888888888887532 33444444445555444444444333
No 268
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.43 E-value=1.5 Score=35.54 Aligned_cols=127 Identities=14% Similarity=0.078 Sum_probs=81.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHH---
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYM--- 449 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 449 (554)
.|..-+. +++.+..++|+.-|..+.+.|...-+. .-..........|+...|...|+++-.. .|.+....-+
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARl 136 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARL 136 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHH
Confidence 4444333 456677889999999988876543332 2333344566788889999999888664 2222222222
Q ss_pred --HHHHHhcCChHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 450 --VKLLGLAGNLEEAYSFIWSLPKP---VDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 450 --~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
.-.+...|.++....-.+-+... -....-..|..+-.+.|++..|...|.++...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 22356778888887777766432 22334456777777888888888888887774
No 269
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.43 E-value=0.27 Score=39.37 Aligned_cols=80 Identities=18% Similarity=0.048 Sum_probs=48.3
Q ss_pred HHHHHHHHH---HhcCChHHHHHHHHhCCC-CCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 445 HYIYMVKLL---GLAGNLEEAYSFIWSLPK-PVD-PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 445 ~~~~l~~~~---~~~g~~~~A~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+...|+..+ .+.++.+++..++..+.. .|. +..-..-...+...|++.+|.++++.+.+..|..+..-..++.++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 334444433 356677777777776642 232 222233344466777777777777777777777777666776666
Q ss_pred HccCC
Q 045069 520 AEDGR 524 (554)
Q Consensus 520 ~~~g~ 524 (554)
...|+
T Consensus 89 ~~~~D 93 (160)
T PF09613_consen 89 YALGD 93 (160)
T ss_pred HHcCC
Confidence 66555
No 270
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.38 E-value=5.7 Score=39.11 Aligned_cols=121 Identities=15% Similarity=0.056 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCChhhHHHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK---PVDPAVSGALLS 483 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~ 483 (554)
..+|...+.--...|+.+.+.-+|+...-. +..-...|-..++-....|+.+-|..++..... +..+.+...-..
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 346777777777778888888777777542 333345555566666666777777777665432 222222222222
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHH
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 529 (554)
.+-..|++..|..+++...+..|.....-..-+....+.|+.+.+.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 3445678888888888888777766666666666677777777777
No 271
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.30 E-value=4.1 Score=37.08 Aligned_cols=17 Identities=18% Similarity=-0.296 Sum_probs=10.7
Q ss_pred HHhcCChHHHHHHHHHH
Q 045069 485 CHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~ 501 (554)
+.+.++++.|.+.|+-+
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 45566777777666644
No 272
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.25 E-value=0.59 Score=46.00 Aligned_cols=145 Identities=16% Similarity=0.096 Sum_probs=98.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh-----hHHHHHHHHHH----hcCChHH
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT-----EHYIYMVKLLG----LAGNLEE 461 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~----~~g~~~~ 461 (554)
..-+|.-+... ++| .+..++....-.||-+.+++.+.+..+..++.-.. -.|...+..+. .....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455666652 333 34556666777899999999998876643333322 22333333332 2457788
Q ss_pred HHHHHHhCCC-CCChhhH-HHHHHHHHhcCChHHHHHHHHHHHhcC----CCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 462 AYSFIWSLPK-PVDPAVS-GALLSCCHIYGNSDLAEIVAHQLFEND----PRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 462 A~~~~~~~~~-~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
|.++++.+.. -|+...| ..-.+.+...|+.++|++.++++.... .-....+..+++++.-.++|++|.+.+.++
T Consensus 252 a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 252 AEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 9999998864 4554444 344455788999999999999887642 223456677889999999999999999999
Q ss_pred hhcC
Q 045069 536 VDNG 539 (554)
Q Consensus 536 ~~~~ 539 (554)
.+.+
T Consensus 332 ~~~s 335 (468)
T PF10300_consen 332 LKES 335 (468)
T ss_pred Hhcc
Confidence 8753
No 273
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.24 E-value=0.08 Score=29.72 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.++..++.++...|++++|++.+++.++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 5678899999999999999999999987654
No 274
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.23 E-value=0.28 Score=38.48 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=24.2
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.++.++++.++..+.-..|+.+..-..-++.+...|+|.+|+++++++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444444444444444444444444444444444444444444444444443
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.16 E-value=1.4 Score=33.85 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=34.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
....+..+..+|+-+.-.+++.++.+. -.|++.....+..+|.+.|+..++.+++.+.-++
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344455666666666666666666542 3556666666667777777777777777666664
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.84 E-value=1.4 Score=40.14 Aligned_cols=218 Identities=14% Similarity=0.066 Sum_probs=101.8
Q ss_pred HhcCChhhHHHHHhhcCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHhcc
Q 045069 251 ARCNCMNSAYHVFNSLFHP------DLVTWSALITGYSQQGDYGKALYYFRKLNMQG--KK---ADPVLIASVLAAAAKS 319 (554)
Q Consensus 251 ~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~---~~~~~~~~l~~~~~~~ 319 (554)
....+.++|+..+.+.... --.++..+..+.++.|.+++++..--.-++.- .. .--..|..+..++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777766655221 22445666777788888777665432211110 00 1112333344444444
Q ss_pred CCcchhHHHHHHHHHh-cCCc---hHHHHHHHHHHHHccCChHHHHHHHhccCC-------C--CcchHHHHHHHHHcCC
Q 045069 320 ANVWPGAVIHGYVIQH-GFEL---SVMVSSALVDMYSKCGYLGLGIQVFETMSE-------R--NIITYNSVILGLGLHG 386 (554)
Q Consensus 320 g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~ 386 (554)
-++.+++.+-+.-... |..| ......++..++...+.++++++.|+...+ | ....|..|...|.+.+
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 4444444443332221 1111 112333455555556666666666665432 1 2235666666677777
Q ss_pred ChHHHHHHHHHHHHc----CCCCCHHHHH-----HHHHHHhcCCchHHHHHHHHHhHHH---hCCCCC-hhHHHHHHHHH
Q 045069 387 FTYQAFEFFRDIIEK----GLNPDESTFS-----ALLCACCHGGLVNDGREIFTRMTEE---YGIQAK-TEHYIYMVKLL 453 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~----g~~p~~~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~ 453 (554)
|+++|.-+..+..+. ++..-..-|. .+.-++...|+.-.|.+..++..+- .|-.+. ......+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 777766666555431 1111111122 2223444555555555555554331 111111 22234455555
Q ss_pred HhcCChHHHHHHHHh
Q 045069 454 GLAGNLEEAYSFIWS 468 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~ 468 (554)
...|+.+.|..-++.
T Consensus 257 R~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQ 271 (518)
T ss_pred HhcccHhHHHHHHHH
Confidence 566666665555544
No 277
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.84 E-value=17 Score=42.45 Aligned_cols=67 Identities=7% Similarity=-0.047 Sum_probs=55.8
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
.-..+|....+.+.++|+++.|...+-.+.+.. -+.++...++.+-..|+...|+.++++.++....
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 345678888888999999999999888888776 4677888888999999999999999998865543
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.79 E-value=0.11 Score=29.16 Aligned_cols=31 Identities=13% Similarity=0.234 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
..+..++.+|...|++++|+..++++++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4688899999999999999999999987654
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.76 E-value=4.8 Score=38.81 Aligned_cols=102 Identities=14% Similarity=0.099 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChh--hHHHHHHHHH
Q 045069 411 SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPA--VSGALLSCCH 486 (554)
Q Consensus 411 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~--~~~~l~~~~~ 486 (554)
..+..++-+.|+.++|.+.++++.+.+.......+...|+.++...+.+.++..++.+-.. -|... .|...+-...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3456666778888888888888876422222345667788888888888888888877542 12222 2333222222
Q ss_pred hcCC---------------hHHHHHHHHHHHhcCCCCchhH
Q 045069 487 IYGN---------------SDLAEIVAHQLFENDPRKGAYK 512 (554)
Q Consensus 487 ~~~~---------------~~~A~~~~~~~~~~~p~~~~~~ 512 (554)
..+| ...|.+.+.++++.+|.-+.+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 2222 2346788899998888766544
No 280
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.74 E-value=2.1 Score=41.59 Aligned_cols=158 Identities=14% Similarity=0.080 Sum_probs=84.1
Q ss_pred HHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 280 GYSQQGDYGKALYYFRKLN-MQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
...-.++++.+.+..+.-. -..+ | ......++.-+.+.|-.+.|+.+...-. .-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 3445667777655554111 0111 1 3335556666666666666665533211 1233455678888
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC
Q 045069 359 LGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438 (554)
Q Consensus 359 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 438 (554)
.|.++.++.. +...|..|.....+.|+++-|.+.|++..+ |..|+-.|.-.|+.+...++.+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 8877776654 455788888888888888888887776533 444555566677776666666655543 1
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 439 IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 439 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
-++....++.-.|+.++..+++.+.
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1344444455567777766666544
No 281
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.59 E-value=0.039 Score=44.35 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=63.8
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhh
Q 045069 109 CITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188 (554)
Q Consensus 109 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 188 (554)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 46777778888888888999888877667788889999999999888888888884433 334566777777777777
Q ss_pred HHHHHHHH
Q 045069 189 SLQLFDWM 196 (554)
Q Consensus 189 a~~~~~~m 196 (554)
+.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 77777664
No 282
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.44 E-value=4.2 Score=34.38 Aligned_cols=30 Identities=23% Similarity=0.201 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
++|..|++-+...|+.++|..+|+-.+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 455566666666666666666666655443
No 283
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.43 E-value=11 Score=38.98 Aligned_cols=93 Identities=12% Similarity=-0.154 Sum_probs=51.3
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCchhHHHHHHHHHccCChh
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND---PRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 526 (554)
+..+...|+..+|...+..+....++.....+.......|..+.++....+....+ -..|..|...+..+.+.-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 44556778888888877766544555666666666677788888877765543321 011223444444444444555
Q ss_pred HHHHHHHHHhhcCCcc
Q 045069 527 DVMKLRDDIVDNGLRK 542 (554)
Q Consensus 527 ~A~~~~~~~~~~~~~~ 542 (554)
.++-+----.+.++.|
T Consensus 494 ~~lv~ai~rqES~f~p 509 (644)
T PRK11619 494 QSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5443322223444433
No 284
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.28 E-value=1.2 Score=42.11 Aligned_cols=125 Identities=12% Similarity=0.032 Sum_probs=73.3
Q ss_pred HcCCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH
Q 045069 383 GLHGFTYQAFE-FFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 383 ~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 461 (554)
...|+...|-+ ++.-+....-.|+..-....| ....|+++.+.+.+..... -+.....+...+++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566555543 444444433444444433333 4566777777777776655 244555666777777777777777
Q ss_pred HHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 462 AYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 462 A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
|..+-..|.. -.++.............|-++++.-.+++....+|+....
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 7777766542 2234444444444555667777777777777776554433
No 285
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.07 E-value=0.19 Score=28.21 Aligned_cols=29 Identities=17% Similarity=0.046 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
|..+...+...|++++|...++++++.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444455555555555555544444
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.99 E-value=0.18 Score=28.89 Aligned_cols=27 Identities=15% Similarity=-0.060 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..|...|.+.|++++|++++++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566777788888888888888885543
No 287
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.98 E-value=0.2 Score=27.73 Aligned_cols=24 Identities=17% Similarity=0.437 Sum_probs=11.2
Q ss_pred HHHHHHHccCChhHHHHHHHHHhh
Q 045069 514 MLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 514 ~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.++.++.+.|++++|.+.++++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.72 E-value=2.8 Score=34.95 Aligned_cols=97 Identities=7% Similarity=-0.056 Sum_probs=53.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHH--HH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES--TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYI--YM 449 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 449 (554)
.+..+..-|.+.|+.+.|.+.|.++.+....|... .+..+++.....+++..+.....+.........|...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 34455666666777777777777776654444433 455666666777777777776666655311111111111 11
Q ss_pred HH--HHHhcCChHHHHHHHHhCC
Q 045069 450 VK--LLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 450 ~~--~~~~~g~~~~A~~~~~~~~ 470 (554)
.. .+...+++.+|.+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 1234677777777776654
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.63 E-value=3 Score=38.13 Aligned_cols=134 Identities=7% Similarity=0.119 Sum_probs=68.1
Q ss_pred HHHHHhhhccc-hhhH----HHHHHHHHHhcCCCChhHHHHHHHHHHh--cC----CchhHHHHhccCC-------CCCc
Q 045069 8 LVLELSKSHQS-LSRT----KELHALVAKASLLRDPFYATKLVRLYAL--NN----VLPSARILFDKTP-------QRSV 69 (554)
Q Consensus 8 ~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~A~~~~~~~~-------~~~~ 69 (554)
.+..++...+. ++.+ ..+++.+.+.|...+.++|-+-.-.... .. ....|..+++.|. .++-
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 44555555544 3333 6777777777777777666654333333 11 2445666666665 2233
Q ss_pred chHHHHHHHHHhcCCh----HHHHHHHHHhHHcCCCCCcc--cHHHHHHHhhcCCC--hhhHHHHHHHHHHhcCCCCHhH
Q 045069 70 FLWNSIIRAYALAHRF----NDAKSLFKNLLRTQLKPDNF--TYACITRACSENSD--LPGLRFVHGGAIVSGLGRDSIT 141 (554)
Q Consensus 70 ~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 141 (554)
.++.+++.. ..++. +.+..+|+.+.+.|...+.. ....++..+..... ..++..+++.+.+.|+++....
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 344444443 22222 34555666666656554433 23333333322222 2355666666666666655555
Q ss_pred HH
Q 045069 142 SS 143 (554)
Q Consensus 142 ~~ 143 (554)
|.
T Consensus 220 yp 221 (297)
T PF13170_consen 220 YP 221 (297)
T ss_pred cc
Confidence 44
No 290
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.36 E-value=1.6 Score=36.25 Aligned_cols=86 Identities=15% Similarity=0.030 Sum_probs=60.1
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHH
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDES------TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKL 452 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 452 (554)
.-+...|++++|..-|.+.++. .|... .|..-..++.+.+.++.|+.-..+..+ +.|+ ......-..+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 3477889999999999998884 34332 244445567788888888887777765 3443 3344445667
Q ss_pred HHhcCChHHHHHHHHhCC
Q 045069 453 LGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~ 470 (554)
|.+...+++|++-++++.
T Consensus 178 yek~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKIL 195 (271)
T ss_pred HHhhhhHHHHHHHHHHHH
Confidence 888888999988887764
No 291
>PRK09687 putative lyase; Provisional
Probab=92.23 E-value=8.8 Score=34.88 Aligned_cols=58 Identities=12% Similarity=-0.011 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNM 299 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 299 (554)
+..+...-+.++++.|+.+..-.+.+.+..++ .....+.++...|+. +|...+..+.+
T Consensus 205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 34444444455555554322222222222222 223445555555553 45555555544
No 292
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.21 E-value=0.84 Score=40.71 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
.++..++..+...|+.+.+.+.++++. .+-+...|..++.+|.+.|+...|+..|+++.+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 355666666666666666666666653 3556666666677777777777777666666653
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.18 E-value=0.19 Score=27.84 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
+..+..++.+.|++++|.+.++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4567788899999999999999999999974
No 294
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.06 E-value=8.4 Score=34.31 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++......|...|.+.+|.++.++++..+|-+...+..|...|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444556778899999999999999999999999999999999999999888888888765
No 295
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.91 E-value=5.7 Score=32.04 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=44.2
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHH
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQAKTEHY-IYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
.+.++.+.+..++..+.- +.|..... ..-...+.+.|+|.+|+.+++++.. .+....-..|+..|.....-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 455666777777766644 34442222 2223345566777777777777653 333333344444444444434444
Q ss_pred HHHHHHHhcCC
Q 045069 496 IVAHQLFENDP 506 (554)
Q Consensus 496 ~~~~~~~~~~p 506 (554)
.+.+++.+..+
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 44555555443
No 296
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.91 E-value=2.8 Score=34.84 Aligned_cols=89 Identities=11% Similarity=-0.019 Sum_probs=42.7
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChhhH-----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPKPVDPAVS-----GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
...+..+|++++|...++.....+....+ ..|.+.....|.+++|+..++...+..- .+.....-++++...|+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~ 174 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc
Confidence 33445556666666555543322222222 2233444555566665555544322100 11223344566666666
Q ss_pred hhHHHHHHHHHhhcC
Q 045069 525 WDDVMKLRDDIVDNG 539 (554)
Q Consensus 525 ~~~A~~~~~~~~~~~ 539 (554)
.++|+.-|++.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 666666666666554
No 297
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.84 E-value=0.36 Score=26.99 Aligned_cols=30 Identities=10% Similarity=0.263 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.++..++.+|...|++++|.+.+++.++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999998754
No 298
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.81 E-value=0.25 Score=25.74 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHccCChhHHHHHHH
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.....++.++...|++++|+.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 455677788888888888887765
No 299
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.79 E-value=0.17 Score=40.60 Aligned_cols=86 Identities=9% Similarity=0.110 Sum_probs=50.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (554)
++..+.+.+.+......++.+...+...+....+.++..|++.++.+...++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4556666677777777777777665555566677777777777766777666651 111222345555556666
Q ss_pred HhHHHHhhcccCC
Q 045069 155 IDEAIKVFDGVSD 167 (554)
Q Consensus 155 ~~~A~~~~~~~~~ 167 (554)
+++|.-++.++..
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 6666666555443
No 300
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.77 E-value=8.1 Score=34.56 Aligned_cols=153 Identities=10% Similarity=0.042 Sum_probs=88.9
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHH-cCCCCCcc
Q 045069 27 ALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLR-TQLKPDNF 105 (554)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~ 105 (554)
...+..|.+++..-....++....+-..... .-|..++. ++....+|+.+|+..-. ..+--|..
T Consensus 101 ~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~------------~~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~e 165 (292)
T PF13929_consen 101 LLKKSMGCELTKEDLISFLKLVIINLSSNKS------------FNYWDLVK---RNKIVVEALKLYDGLNPDESIIFDEE 165 (292)
T ss_pred HHHHHcCCCCcHHHHHHHHHHHHhccccccc------------hHHHHHHH---hhHHHHHHHHHhhccCcccceeeChH
Confidence 3444556666666666666654443221111 11444443 23445566666663221 12444666
Q ss_pred cHHHHHHHhhc-CC-ChhhHHHHHHHHHHh-cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC-----CCcchHHHHH
Q 045069 106 TYACITRACSE-NS-DLPGLRFVHGGAIVS-GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-----PDLVLCNSMI 177 (554)
Q Consensus 106 ~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li 177 (554)
....+++.... .+ ....--++.+.+... |-.++..+...++..+++.+++..-.++++.... .|...|..+|
T Consensus 166 vislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI 245 (292)
T PF13929_consen 166 VISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFI 245 (292)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHH
Confidence 66666666554 22 223333444444432 3466777778888888888888888888876543 5777888888
Q ss_pred HHHHhCCChhhHHHHHH
Q 045069 178 SGFAHCGFWDKSLQLFD 194 (554)
Q Consensus 178 ~~~~~~~~~~~a~~~~~ 194 (554)
......|+..-...+.+
T Consensus 246 ~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 246 KLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHcCCHHHHHHHhh
Confidence 88888888775555444
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.68 E-value=12 Score=35.38 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=31.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQ 334 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 334 (554)
..+.-+.|+++...+........ .++...+..+... ..++.+++....+...+
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45667788888855555544322 2344444444333 77788877777766553
No 302
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.39 E-value=0.55 Score=39.44 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSL-PK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
+..+..+.+.++..+|+...+.- +. +.+...-..++..++-.|++++|..-++-+-+..|+..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34455566667777777666553 32 34555556666667777777777777777766666543
No 303
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.13 E-value=9.2 Score=32.92 Aligned_cols=20 Identities=10% Similarity=-0.082 Sum_probs=12.0
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q 045069 486 HIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~ 505 (554)
...+++.+|+.+|++.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666665553
No 304
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.13 E-value=13 Score=39.32 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQ 300 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 300 (554)
.-|..|+..|...|+.++|+++|.+....
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 34788899999999999999999988763
No 305
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=1.7 Score=38.85 Aligned_cols=102 Identities=15% Similarity=0.158 Sum_probs=58.8
Q ss_pred HhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC-CC------CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCC
Q 045069 31 KASLLRDPFYATKLVRLYALNNVLPSARILFDKTP-QR------SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPD 103 (554)
Q Consensus 31 ~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 103 (554)
..|.+.+..+...++..-.....+++++..+-.++ +| +...+ +.++.+ -.-++++++.++..=.+.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccc
Confidence 34555555556666655555666666666655444 11 11111 222222 23345667777766666777777
Q ss_pred cccHHHHHHHhhcCCChhhHHHHHHHHHHhc
Q 045069 104 NFTYACITRACSENSDLPGLRFVHGGAIVSG 134 (554)
Q Consensus 104 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 134 (554)
..+++.++..+.+.++...|.++.-+|..+.
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777666666665543
No 306
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.93 E-value=0.89 Score=38.98 Aligned_cols=64 Identities=5% Similarity=-0.126 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+..+..++...|++-++++.-...+...|.+..+|+.-+.+....=+.++|..-|.++++..+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3344455667778888888888888888888888888777777777777888877777766543
No 307
>PRK09687 putative lyase; Provisional
Probab=90.88 E-value=12 Score=33.94 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=59.2
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC-chHHHHHHHHHhHHHhCCCCChhHHHHH
Q 045069 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG-LVNDGREIFTRMTEEYGIQAKTEHYIYM 449 (554)
Q Consensus 371 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l 449 (554)
+...-...+.++.+.++ ..++..+-.+.+ .+|...-...+.++.+.+ +...+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 33333444444444444 334444444443 233333333333443332 12334444444332 2344445555
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+.++.+.|+. .|+..+-.....++ .....+.++...|+. +|...+.++.+.+| |..+.....+++
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 5555555553 34433333222222 233455555666663 56666666666555 333333333333
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.84 E-value=17 Score=35.37 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHH
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVI 379 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 379 (554)
..|.....+++..+.....+.-++.+..+|...| -+...|..++++|... ..++-..+++++.+ .|++.-..|.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 4455566667777777666677777777776654 3445566666666666 44555556664443 2333333333
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDE------STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
.-|-+ ++.+.+..+|.++... +-|.. ..|..+... -..+.+..+++..++....|...-...+..+-.-|
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 33333 5666666666666654 22311 123333321 13455566666666655555555555555555566
Q ss_pred HhcCChHHHHHHHHhCC
Q 045069 454 GLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~ 470 (554)
....++.+|++++..+.
T Consensus 216 s~~eN~~eai~Ilk~il 232 (711)
T COG1747 216 SENENWTEAIRILKHIL 232 (711)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 66666666666665543
No 309
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.71 E-value=1.2 Score=36.43 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=29.8
Q ss_pred CCChhhHHHHHHHHHhcC-----------ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc-cCChhHHHHHHHHHhhcC
Q 045069 472 PVDPAVSGALLSCCHIYG-----------NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE-DGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 539 (554)
|....++..+..++...+ .+++|...|+++...+|.+ ..|.+ ....++|-++..++.+++
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQG 137 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334455555555544332 2445555555555556654 34443 344555666666665554
Q ss_pred Cc
Q 045069 540 LR 541 (554)
Q Consensus 540 ~~ 541 (554)
..
T Consensus 138 ~~ 139 (186)
T PF06552_consen 138 LG 139 (186)
T ss_dssp S-
T ss_pred hh
Confidence 43
No 310
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.52 E-value=0.77 Score=41.37 Aligned_cols=102 Identities=9% Similarity=-0.048 Sum_probs=72.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcC
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYG 489 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 489 (554)
--..-|.+.|.+++|+..|..... -.+.++.++..-..+|.+..++..|..-...... ..-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 346678899999999999998865 2333788888888889999988888776665431 222334444444455667
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
...+|..-++.++++.|++...--.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 88889999999999999865544433
No 311
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.50 E-value=42 Score=39.48 Aligned_cols=310 Identities=11% Similarity=0.047 Sum_probs=151.4
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHCCC--CCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 045069 175 SMISGFAHCGFWDKSLQLFDWMLRLGK--TPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYAR 252 (554)
Q Consensus 175 ~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (554)
.+..+-.+.+.+.+|+..++.-..... .....-|..+...|+..++++....+...-. .+... ...+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl-~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSL-YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccH-HHHHHHHHh
Confidence 455567788889999999888311100 1122334444558888888888777665311 11112 223445567
Q ss_pred cCChhhHHHHHhhcCC--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhccCCcchhHHH
Q 045069 253 CNCMNSAYHVFNSLFH--PD-LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVL-IASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~ 328 (554)
.|+++.|...|+.+.. |+ ...++-++......|.++.++...+-..... .+.... ++.-+.+-=+.++++..+..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 7889999999998843 33 5567777777777777777766555443321 122222 22222233345555555554
Q ss_pred HHHHHHhcCCchHHHHHH--HHHHHHccCChH--HHHHHHhccCC------------C-CcchHHHHHHHHHcCCChHHH
Q 045069 329 HGYVIQHGFELSVMVSSA--LVDMYSKCGYLG--LGIQVFETMSE------------R-NIITYNSVILGLGLHGFTYQA 391 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~A~~~~~~~~~------------~-~~~~~~~l~~~~~~~~~~~~a 391 (554)
+. +.+ ..+|.. +.....+..+-+ .-.+..+.+.+ . -...|..++..+.-.. -
T Consensus 1541 l~---~~n----~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l 1609 (2382)
T KOG0890|consen 1541 LS---DRN----IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----L 1609 (2382)
T ss_pred hh---ccc----ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----H
Confidence 43 111 111111 111111111100 00011111110 0 0012333332221110 0
Q ss_pred HHHHHHHHHcCCCCCHHH------HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC-----ChhHHHHHHHHHHhcCChH
Q 045069 392 FEFFRDIIEKGLNPDEST------FSALLCACCHGGLVNDGREIFTRMTEEYGIQA-----KTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 392 ~~~~~~m~~~g~~p~~~~------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 460 (554)
....+.. .+..++..+ |..-+..-....+..+-+-.+++..-.....| -..+|...++...++|+++
T Consensus 1610 ~~~~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1610 ENSIEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 0000001 112332221 22222111111111221111222111111122 2567778888888899999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 461 EAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 461 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
.|...+-......-+..+...+.-....|+...|+.++++.++.
T Consensus 1688 ~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1688 RAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99988766655446667777777788999999999999999977
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=90.44 E-value=29 Score=37.57 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=67.4
Q ss_pred CChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hccCCcchhHHHH
Q 045069 254 NCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA----AKSANVWPGAVIH 329 (554)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~ 329 (554)
++++.|+..+..+. ...|.-.++.--++|.+++|+.++ +|+...+..+..+| ...+.++.|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44555555554443 223334444445566777776665 34554444444333 3344555554444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchH---HHHHHHHHcCCChHHHHHHHHHHHH
Q 045069 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITY---NSVILGLGLHGFTYQAFEFFRDIIE 400 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~ 400 (554)
+..-+. .--+.+|..+|+|.+|+.+-.++..+-.... ..|+..+...+++-+|-++..+..+
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 433211 1234556666777777777766664333332 5566667777777777776666543
No 313
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.34 E-value=17 Score=34.67 Aligned_cols=129 Identities=15% Similarity=0.156 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHHh-CCCCCChhh-HHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYG-IQAKTEHYIYMVKLLGLAGNLEEAYSFIWS-LPKPVDPAV-SGALLSC 484 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~-~~~l~~~ 484 (554)
..|...+..-.+..-++.|..+|-++.+. + +.+++.++++++..++ .|+...|..+|+- |..-||... ....+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45677777778888899999999999986 6 6778888899988665 6888899999987 444444444 4566667
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRK--GAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+..-+|-..|..+|+..++.-..+ ..+|..++..-..-|+...+..+=+++.+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 778899999999999887763333 678888887788889998888777776543
No 314
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.32 E-value=1.9 Score=38.54 Aligned_cols=100 Identities=21% Similarity=0.188 Sum_probs=67.5
Q ss_pred hcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-------CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH
Q 045069 335 HGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-------RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE 407 (554)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 407 (554)
.|.+.+..+...++..-....+++++...+=.++. ++...+ +.+..+ -.=+.++++.++..=++.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 34455555556666656666777777777666653 222111 222222 233577888888888888999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
++++.+++.+.+.+++.+|.++.-.|...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 99999999999999998888887776654
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.28 E-value=1.1 Score=32.37 Aligned_cols=52 Identities=19% Similarity=0.070 Sum_probs=26.2
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHHHHHccCC
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR--KGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 524 (554)
.|......+...+...|+++.|++.+-.+++.+|. +...-..++.++.-.|.
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 34455555555566666666666666665555433 24444555555555554
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.18 E-value=0.55 Score=27.72 Aligned_cols=28 Identities=21% Similarity=0.546 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.++..|+.+|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567788888888888888888888765
No 317
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.17 E-value=2.1 Score=30.80 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVK 451 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 451 (554)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+..+.+ ...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 3456666777777778999999999999999999999999999988764 3334556666654
No 318
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.88 E-value=12 Score=32.25 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=9.5
Q ss_pred CChHHHHHHHHHHHhcCCC
Q 045069 489 GNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~ 507 (554)
.|.-.+...+++..+.+|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4444455555555555554
No 319
>PRK12798 chemotaxis protein; Reviewed
Probab=89.70 E-value=19 Score=34.21 Aligned_cols=184 Identities=9% Similarity=0.080 Sum_probs=114.5
Q ss_pred cCChHHHHHHHhccCC----CCcchHHHHHHH-HHcCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhcCCchH
Q 045069 354 CGYLGLGIQVFETMSE----RNIITYNSVILG-LGLHGFTYQAFEFFRDIIEKGLNPDES----TFSALLCACCHGGLVN 424 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~ 424 (554)
.|+.++|.+.+..+.. +....|-.|+.+ .....+..+|+++|+...= ..|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 4788888888887763 344566666665 4456678888888888765 445433 2333344567888888
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHH-HHHHHHh---cCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIY-MVKLLGL---AGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 500 (554)
++..+-.+...++...|...-|.. +...+.+ .-..+.-..++..|........|..+...-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888887777776666665444433 2223333 234455556666666555566788888888888999999988888
Q ss_pred HHhcCCCCchhHHHHHH-----HHHccCChhHHHHHHHHHhhcCC
Q 045069 501 LFENDPRKGAYKVMLSN-----TYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 501 ~~~~~p~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+......+ ..-...+. +-.-..++++|.+.+..+-...+
T Consensus 283 A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 283 ALKLADPD-SADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 88884221 11111112 22334567777777766654433
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.65 E-value=10 Score=30.99 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=65.2
Q ss_pred HHccCChHHHHHHHhccCCCCcchHHHHHH-----HHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHhcCCc
Q 045069 351 YSKCGYLGLGIQVFETMSERNIITYNSVIL-----GLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSAL--LCACCHGGL 422 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--l~~~~~~~~ 422 (554)
+...++.++|+.-|..+.+.+...|-.|.. ...+.|+...|...|++.-...-.|-.. -...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345566777777777766655555544432 3456677777777777766533333322 11111 112345666
Q ss_pred hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 423 VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 423 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
++....-.+.+... +.+.-...-..|.-+-.+.|++..|.++|..+.
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 66666665555442 333333444555556666777777777776653
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.52 E-value=3.3 Score=30.16 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+.++.+ ..+....|..+++-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHHH
Confidence 45566667777778999999999999999999999999999999886 33444477777654
No 322
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.34 E-value=14 Score=32.15 Aligned_cols=167 Identities=8% Similarity=-0.038 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh--cCCchH--HHHHHHHHHHHccCChHHHHH
Q 045069 287 YGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH--GFELSV--MVSSALVDMYSKCGYLGLGIQ 362 (554)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~g~~~~A~~ 362 (554)
++.|.-+.++|.+. .--...|......|...|..+.|-..++..-+. ++.|+. ..|..-+......++...|.+
T Consensus 74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e 151 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE 151 (308)
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34444444444332 111223444455566666666666555554321 222321 223322333333333333333
Q ss_pred HHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHH----cCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHh
Q 045069 363 VFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIE----KGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEY 437 (554)
Q Consensus 363 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 437 (554)
+ +...-..+.+..++++|-..+.+-.. ..-.|+. ..|...|-.+.-..++..|...++...+-.
T Consensus 152 l-----------~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 152 L-----------YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred H-----------HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 3 33344556666666666555544221 1122333 245566666777788888888888743321
Q ss_pred --CCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 045069 438 --GIQAKTEHYIYMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 438 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 467 (554)
.-+-+..+...|+.+| ..|+.+++.+++.
T Consensus 221 ~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 221 AFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred cccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 1222455666677666 4677777777664
No 323
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.28 E-value=3.4 Score=36.96 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHH-----hcCCCCHhHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIV-----SGLGRDSITSSAL 145 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 145 (554)
++..++..+...|+++.+.+.++.+..... -+...|..++.++.+.|+...|...++.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 355566677777888888888888877643 3667788888888888888888888777765 3677777766655
Q ss_pred HHH
Q 045069 146 VTA 148 (554)
Q Consensus 146 i~~ 148 (554)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
No 324
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.97 E-value=12 Score=31.18 Aligned_cols=92 Identities=9% Similarity=0.016 Sum_probs=64.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhCCCC-CChhhHHHHHHHHHh
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKT----EHYIYMVKLLGLAGNLEEAYSFIWSLPKP-VDPAVSGALLSCCHI 487 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (554)
+...+...+++++|..-++.... .+.|. .+--.|.+.....|.+++|+..++....+ -.......-...+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 34456778888888888887654 22222 22234666778889999999999887643 223334445567888
Q ss_pred cCChHHHHHHHHHHHhcCCC
Q 045069 488 YGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~ 507 (554)
.|+-++|...|+++++..+.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 99999999999999988643
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.94 E-value=3.4 Score=26.13 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
...+..++.+.|++++|.+..+.+++..|++..+....
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 34566678899999999999999999999887665544
No 326
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.24 E-value=0.93 Score=27.29 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=22.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 513 VMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 513 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
..|+.+|...|+.+.|.+++++++..+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357788999999999999999888654
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.24 E-value=34 Score=35.33 Aligned_cols=50 Identities=12% Similarity=0.047 Sum_probs=33.8
Q ss_pred CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCC
Q 045069 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPS 219 (554)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 219 (554)
+...--.+|-.|.++|++++|.++..+... ........|...+..+....
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCC
Confidence 444555677888899999999988855543 34556677778888887653
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.21 E-value=1.1 Score=26.41 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
++..+...|...|++++|+.+++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4556666666666666666666666554
No 329
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.12 E-value=5.5 Score=33.20 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCcchhHHHHHHHH
Q 045069 273 TWSALITGYSQQGDYGKALYYFRKLNMQGKKADP--VLIASVLAAAAKSANVWPGAVIHGYVI 333 (554)
Q Consensus 273 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 333 (554)
.+..+...|.+.|+.+.|.+.|.++.+....+.. ..+..+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556667777777777777777777665444433 244556666666677766666655544
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.77 E-value=34 Score=34.81 Aligned_cols=246 Identities=11% Similarity=0.078 Sum_probs=121.7
Q ss_pred hcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhccC-----CcchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 045069 283 QQGDYGKALYYFRKLNM-------QGKKADPVLIASVLAAAAKSA-----NVWPGAVIHGYVIQHGFELSVMVSSALVDM 350 (554)
Q Consensus 283 ~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (554)
...|.+.|+.+++.+.+ .| .+.....+-.+|.+.. +.+.|..++....+.| .|+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 34455566665555544 33 1112333334444332 3344555555555555 2333222222222
Q ss_pred HHc-cCChHHHHHHHhccCC-CCcchHHHHHHHHH----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 045069 351 YSK-CGYLGLGIQVFETMSE-RNIITYNSVILGLG----LHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424 (554)
Q Consensus 351 ~~~-~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 424 (554)
... ..+...|.++|....+ -.+..+-.+..+|. ...+...|..++.+..+.| .|...--...+..+.. ++++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 222 2345566666665543 22333322222222 2346777778888777776 3332222222223333 6666
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHH---Hh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CChHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLL---GL----AGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY----GNSDL 493 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 493 (554)
.+.-.+..+.+- +.......-..+.... .. ..+.+.+..++.+...+.+......+...|..- .+.+.
T Consensus 415 ~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 666555555552 3332211111111111 11 224556666666665555566655555554332 36788
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHHHHHHHHhhcC
Q 045069 494 AEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 539 (554)
|...|.++.... ......++..+.. .. +..|.+++++..+.+
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcC
Confidence 888888877766 6666677666553 23 678888888876644
No 331
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.76 E-value=21 Score=32.44 Aligned_cols=21 Identities=5% Similarity=0.153 Sum_probs=16.7
Q ss_pred HHHHHccCChhHHHHHHHHHh
Q 045069 516 SNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~ 536 (554)
+....+.++|++|.+.|+-..
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 345678999999999998654
No 332
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.71 E-value=0.65 Score=26.12 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=11.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAY 463 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~ 463 (554)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3555555555555555555553
No 333
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.61 E-value=37 Score=35.06 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCCh-------hhHHHHHHHHHHhcCCCCH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDL-------PGLRFVHGGAIVSGLGRDS 139 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~ 139 (554)
.--.+|-.|.|.|++++|.++....... .......+...+..+....+- ++...-+++..+.....|+
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 3446888899999999999999666544 566667888888888765322 3444555555544332244
No 334
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.59 E-value=8.9 Score=27.89 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=61.1
Q ss_pred ChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHH
Q 045069 119 DLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLR 198 (554)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 198 (554)
..++|.-+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|-.++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 457777777777665422 333333445678899999999999999988999998877654 66777777777777776
Q ss_pred CCCCCChhhHH
Q 045069 199 LGKTPDEYTLV 209 (554)
Q Consensus 199 ~~~~p~~~~~~ 209 (554)
.| .|....|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 65 44444443
No 335
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.38 E-value=23 Score=32.45 Aligned_cols=93 Identities=12% Similarity=0.210 Sum_probs=54.5
Q ss_pred HHHHHHHhccCC-------CCcchHHHHHHHHHcCCC----hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcCCc--
Q 045069 358 GLGIQVFETMSE-------RNIITYNSVILGLGLHGF----TYQAFEFFRDIIEKGLNPDES--TFSALLCACCHGGL-- 422 (554)
Q Consensus 358 ~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~-- 422 (554)
.+|..+|+.|++ ++..++..++.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 345556666653 333444444433 2222 356777888888888776544 34444433332222
Q ss_pred hHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 423 VNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 423 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
..++.++++.+.++ |+++....|..++-..
T Consensus 198 v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 198 VARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 44788888888886 8888877776655433
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.23 E-value=1.3 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=11.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHh
Q 045069 512 KVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 512 ~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
+..++.++...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444455555554444444
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.13 E-value=11 Score=38.23 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=38.1
Q ss_pred ChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 458 NLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 458 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
+...|.++|..............+..++.. ..+...|..+++++.+.++............+.. ++++.+.-.+.
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~ 421 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYL 421 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHH
Confidence 345566666555443333333333333321 2356666666666666652221222222222223 56666655555
Q ss_pred HHhhcCCc
Q 045069 534 DIVDNGLR 541 (554)
Q Consensus 534 ~~~~~~~~ 541 (554)
.+.+.+..
T Consensus 422 ~~a~~g~~ 429 (552)
T KOG1550|consen 422 YLAELGYE 429 (552)
T ss_pred HHHHhhhh
Confidence 55544443
No 338
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.05 E-value=2.2 Score=38.57 Aligned_cols=86 Identities=13% Similarity=-0.054 Sum_probs=59.0
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG 457 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (554)
..-|.++|.+++|+.+|...+. +.| |.+++..-..+|.+...+..|+.-......- -......|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 3469999999999999999887 677 8888888889999999999888777766541 1111233333333333345
Q ss_pred ChHHHHHHHHh
Q 045069 458 NLEEAYSFIWS 468 (554)
Q Consensus 458 ~~~~A~~~~~~ 468 (554)
+..+|.+-++.
T Consensus 180 ~~~EAKkD~E~ 190 (536)
T KOG4648|consen 180 NNMEAKKDCET 190 (536)
T ss_pred hHHHHHHhHHH
Confidence 55555555444
No 339
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.02 E-value=21 Score=31.45 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=35.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhc
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGK--KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHG 336 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 336 (554)
+..-.+.|++++|...|+.+..... +....+...++-++.+.++++.|....++..+..
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 3445667888888888887775421 2223444455556666666666666666665543
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.84 E-value=4.2 Score=32.19 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=51.1
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChh-HHHHHHHHHHhcCChHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCChHH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTE-HYIYMVKLLGLAGNLEEAYSFIWSLPKPV-DPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 493 (554)
.-...++.+++..+++.+.- +.|... .-..-...+...|+|++|.++++++.... ....-..|...|........
T Consensus 19 ~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 19 YALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 33458899999999999965 555532 22223345678999999999999987643 33333344444444333223
Q ss_pred HHHHHHHHHhc
Q 045069 494 AEIVAHQLFEN 504 (554)
Q Consensus 494 A~~~~~~~~~~ 504 (554)
=..+..++++.
T Consensus 96 Wr~~A~~~le~ 106 (153)
T TIGR02561 96 WHVHADEVLAR 106 (153)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 341
>PRK10941 hypothetical protein; Provisional
Probab=86.46 E-value=4.4 Score=36.32 Aligned_cols=59 Identities=15% Similarity=-0.015 Sum_probs=31.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+-.+|.+.++++.|..+.+.++...|+++.-+.--+-+|.+.|.+..|..-++..++..
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 33344555555555555555555555555555555555555555555555555554443
No 342
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=86.31 E-value=18 Score=29.95 Aligned_cols=109 Identities=8% Similarity=0.030 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhcCCchHHHHHHHHHhHHH----hCCCCC-hhHHHHHHHHHHhcC---
Q 045069 389 YQAFEFFRDIIEKGLNPDEST---FSALLCACCHGGLVNDGREIFTRMTEE----YGIQAK-TEHYIYMVKLLGLAG--- 457 (554)
Q Consensus 389 ~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g--- 457 (554)
+.|.+.++.-...+ +.|... |...+.-+++.....++.+++++...+ ..+.|+ ..++..+..+|...+
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 44555555544321 223333 333333344444434444444443332 346776 467777877776543
Q ss_pred -ChHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 458 -NLEEAYSFIWSLP--------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 458 -~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..+|.++|++.. ..|+...|+.-+.... +|-++..++.+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 4445555555442 3677777777666553 355555555444
No 343
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.20 E-value=20 Score=34.03 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC-CchhHHHHHHHHH-ccCChhHHHHHHHHHhh
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPR-KGAYKVMLSNTYA-EDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 537 (554)
..+..+.+.|-+..|.++.+-+...+|. ||......++.|+ +.++++--+++.+....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3455677889999999999999999998 8887777777775 67888878888887655
No 344
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.83 E-value=8.5 Score=32.40 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=52.4
Q ss_pred ChHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCchhHHHHHHHHHccCChhHHH
Q 045069 458 NLEEAYSFIWSLPKPV--DPAVSGALLSCCHIYGNSDLAEIVAHQLFEND----PRKGAYKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 458 ~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~ 529 (554)
.-++|.+.|-.+...| +.......+..|....|.+++++++-++++.. ..++.++..|+.++.+.|++++|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3466777777765432 33333444445566789999999999999983 346889999999999999999874
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.30 E-value=7.6 Score=37.10 Aligned_cols=150 Identities=13% Similarity=0.109 Sum_probs=95.0
Q ss_pred HHccCChHHHHH-HHhccCC----CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHH
Q 045069 351 YSKCGYLGLGIQ-VFETMSE----RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVND 425 (554)
Q Consensus 351 ~~~~g~~~~A~~-~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 425 (554)
-...|++..|.+ ++..+.. |+..... ...+...|+++.+...+...... +.....+...+++...+.|+++.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 344577666654 3333332 4433333 33456789999999988877654 45566788899999999999999
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 426 GREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
|..+-.-|... .+. ++++...-.......|-++++.-.|++.. .+|....|..+++.-.-.++...-.+.|...++
T Consensus 376 a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~ 453 (831)
T PRK15180 376 ALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGNAFSEAFHAGIQ 453 (831)
T ss_pred HHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcchHHHHHHhhhh
Confidence 99999888774 333 33333333333445678899999998863 466666776666654333443334444544444
Q ss_pred cC
Q 045069 504 ND 505 (554)
Q Consensus 504 ~~ 505 (554)
..
T Consensus 454 ~~ 455 (831)
T PRK15180 454 SQ 455 (831)
T ss_pred hh
Confidence 43
No 346
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.53 E-value=5 Score=34.64 Aligned_cols=66 Identities=12% Similarity=0.167 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCh-------HHHHHHHHHHHhcC--CC----CchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 477 VSGALLSCCHIYGNS-------DLAEIVAHQLFEND--PR----KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~-------~~A~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+..+.+.|...|+. ..|.+.|+++.+.. |. ...+..+++.+..+.|++++|.+.|.+++..+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 334455555555553 44555555555552 32 24677888999999999999999999998754433
No 347
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.51 E-value=61 Score=34.61 Aligned_cols=128 Identities=11% Similarity=0.103 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCC--CCHhHHHHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLG--RDSITSSALVTA 148 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~ 148 (554)
-|..|+..|...|+.++|+++|.+.... .. +.. ....+.-+.+.+-+.+.+-+ +-...|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~-~~-~~d-----------~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~---- 568 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE-DS-DTD-----------SFQLDGLEKIIEYLKKLGAENLDLILEYAD---- 568 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc-cc-ccc-----------cchhhhHHHHHHHHHHhcccchhHHHHHhh----
Confidence 4889999999999999999999998764 11 111 11112222233334444322 11122221
Q ss_pred HHcCCCHhHHHHhhcccCC--CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcc
Q 045069 149 YSKLSLIDEAIKVFDGVSD--PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLW 216 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 216 (554)
+.-..+.+...++|-.-.. .....-.. +-.|......+-+..+++.+....-.++..-.+.++.-|+
T Consensus 569 wvl~~~p~~gi~Ift~~~~~~~~sis~~~-Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 569 WVLNKNPEAGIQIFTSEDKQEAESISRDD-VLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhccCchhheeeeeccChhhhccCCHHH-HHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 1234556667777755111 11111222 3346677778888888988877655666666666665553
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.36 E-value=34 Score=34.15 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMT 434 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 434 (554)
.-|..|.++..+.+++..|.+.|.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 345555555555555555555555443
No 349
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=84.26 E-value=1.8 Score=23.01 Aligned_cols=31 Identities=23% Similarity=0.090 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
..+..+...+...|+++.|...++++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567788889999999999999999988766
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.02 E-value=2.4 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=10.0
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 045069 448 YMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~ 467 (554)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 351
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.90 E-value=0.58 Score=42.24 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=39.9
Q ss_pred CChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 457 GNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 457 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
|.+++|++.+..... ++....+..-.+++.+.++...|++-+..+++++|+...-|-.-+.+....|+|++|...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 444444444444321 222333333334444555555555555555555555555555444455555555555555555
Q ss_pred HhhcCC
Q 045069 535 IVDNGL 540 (554)
Q Consensus 535 ~~~~~~ 540 (554)
..+.++
T Consensus 208 a~kld~ 213 (377)
T KOG1308|consen 208 ACKLDY 213 (377)
T ss_pred HHhccc
Confidence 544443
No 352
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.88 E-value=26 Score=29.90 Aligned_cols=159 Identities=13% Similarity=-0.019 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc-hHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSERNII-TYNSVILG--LGLHGFTYQAFEFFRDIIEKGLNPDES--TFSALL 414 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll 414 (554)
-+.+||-|.-.+...|+++.|.+.|+...+.|+. -|..+=.+ +--.|++.-|.+-+...-+.... |+. -|..+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 3567888888888899999999999988764442 33333332 33468888888877777764322 222 233332
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC-CC-----CCChhhHHHHHHHHHhc
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL-PK-----PVDPAVSGALLSCCHIY 488 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~~~~~~~~~l~~~~~~~ 488 (554)
...-++.+|..-+.+--+ +...+-..++.+ ..|.-.=..+.+.+-...- .. ..-..+|.-|..-+...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~--~~d~e~WG~~iV-~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE--KSDKEQWGWNIV-EFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH--hccHhhhhHHHH-HHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 234456666554433322 222222222222 2221111111222211111 10 12234677788888899
Q ss_pred CChHHHHHHHHHHHhcC
Q 045069 489 GNSDLAEIVAHQLFEND 505 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~ 505 (554)
|+.++|..+|+-++..+
T Consensus 251 G~~~~A~~LfKLaiann 267 (297)
T COG4785 251 GDLDEATALFKLAVANN 267 (297)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999999999888764
No 353
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.53 E-value=19 Score=36.86 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.....|+..|...|++..|.+.+-++.+
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 3444577777777778777777665543
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=82.63 E-value=64 Score=33.44 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHHHHhc---CCCCc-hhH-----HHHHHHHHccCChhHHHHHHHHHhh
Q 045069 488 YGNSDLAEIVAHQLFEN---DPRKG-AYK-----VMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~---~p~~~-~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.|+..+.......+... .|+.. ..+ ..+.+.+...|+.++|.+...+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 67777766666555544 22222 222 3455568889999999998887653
No 355
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=82.55 E-value=5.6 Score=34.28 Aligned_cols=55 Identities=13% Similarity=0.129 Sum_probs=29.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
=+.++.+..+++.+.+--.++++..|+.....+.++..+.....+++|+..+++.
T Consensus 50 ralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 50 RALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3334444555555555555555555555555555555555555555555555554
No 356
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.07 E-value=11 Score=27.21 Aligned_cols=49 Identities=12% Similarity=-0.006 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh
Q 045069 287 YGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH 335 (554)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 335 (554)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-.+.+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345555555555667777777777777777777777777777766543
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=81.29 E-value=1.9 Score=29.72 Aligned_cols=48 Identities=10% Similarity=0.043 Sum_probs=34.6
Q ss_pred hcCChHHHHHHHHHHHhcCCCCch---hHHHHHHHHHccCChhHHHHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGA---YKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
..++.++|+..++.+++..++.+. ++..|+.+|+..|++.+++++--.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888655443 444566778888888888776544
No 358
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.27 E-value=29 Score=28.51 Aligned_cols=38 Identities=3% Similarity=-0.064 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhc
Q 045069 126 VHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFD 163 (554)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 163 (554)
.++-+.+.+++|+...+..++..+.+.|++..-..++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 34444455666666666666666666666555444443
No 359
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.46 E-value=4.4 Score=21.90 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNT 518 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 518 (554)
|+.+.|..+|++++...|.++.++...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888889999998888888888777643
No 360
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=80.35 E-value=83 Score=33.24 Aligned_cols=219 Identities=11% Similarity=-0.059 Sum_probs=119.0
Q ss_pred HHhccCCcchhHHHHHHHHHhcCCchH-------HHHHHHH-HHHHccCChHHHHHHHhccCC--------CCcchHHHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGFELSV-------MVSSALV-DMYSKCGYLGLGIQVFETMSE--------RNIITYNSV 378 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~-~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 378 (554)
......++.+|..+..++...-..|+. ..++.+- ......|+++.|.++-+...+ +.+..+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 445667888888888777654323221 1222221 223346788888877665442 455667777
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHH---HHHHHH--HHHhcCCch--HHHHHHHHHhHHHhCCCCC-----hhHH
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDES---TFSALL--CACCHGGLV--NDGREIFTRMTEEYGIQAK-----TEHY 446 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~ll--~~~~~~~~~--~~a~~~~~~~~~~~~~~~~-----~~~~ 446 (554)
..+..-.|++++|..+..+..+.--.-+.. .|..+. ..+...|.. .+.+..+............ ..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 788888999999998887766532122222 233332 234556633 3333444444332111111 2333
Q ss_pred HHHHHHHHhcCChHHHHHHHHh----CC-CCCCh--hhH--HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCchhHHH-
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWS----LP-KPVDP--AVS--GALLSCCHIYGNSDLAEIVAHQLFEND--PRKGAYKVM- 514 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~----~~-~~~~~--~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~- 514 (554)
..+..++.+ .+.+..-... .. ..|.+ ... ..|+......|+.++|...+.++.... +.....|..
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444444444 3333322222 11 12221 112 256777788999999999999988873 321222221
Q ss_pred --H--HHHHHccCChhHHHHHHHHHh
Q 045069 515 --L--SNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 515 --l--~~~~~~~g~~~~A~~~~~~~~ 536 (554)
. .......|+..+|.....+-.
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhcc
Confidence 1 223456899999988887743
No 361
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.26 E-value=18 Score=26.36 Aligned_cols=78 Identities=9% Similarity=-0.082 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 045069 19 LSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRT 98 (554)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 98 (554)
..++..|-+.+...+-. ....-..-+..+..+|++++|..+.+....||...|-++-. .+.|..+++..-+..|-..
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 44555666666554422 22222223346677888888888888888888888876655 3566666666666666665
Q ss_pred C
Q 045069 99 Q 99 (554)
Q Consensus 99 ~ 99 (554)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 362
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.18 E-value=15 Score=28.50 Aligned_cols=43 Identities=5% Similarity=0.044 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhc--CCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 493 LAEIVAHQLFEN--DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 493 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
.+.++|+.+... ....+..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 788888888776 4667788888888899999999999998764
No 363
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.93 E-value=23 Score=28.22 Aligned_cols=76 Identities=9% Similarity=0.102 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCHhHHHHhhcccCC---------CCcchHHHHHHHHHhCCC-hhhHHHHHHHHHHCCCCCChhhHHHHH
Q 045069 143 SALVTAYSKLSLIDEAIKVFDGVSD---------PDLVLCNSMISGFAHCGF-WDKSLQLFDWMLRLGKTPDEYTLVGLI 212 (554)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll 212 (554)
+.++.-....+.+...+.+++.+.. .+...|++++.+..+... ---+..+|+-|++.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444444444444444444443321 456678888888765555 345667788888777888888888888
Q ss_pred HHcccC
Q 045069 213 SGLWEP 218 (554)
Q Consensus 213 ~~~~~~ 218 (554)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 877654
No 364
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.52 E-value=47 Score=29.86 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=44.8
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 316 (554)
..++.....+...|.+.|++.+|+..|-.-..++...+..++.-+...|...++--. ....+--|
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlf---------------i~RaVL~y 151 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLF---------------IARAVLQY 151 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHH---------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHH---------------HHHHHHHH
Confidence 356778888888899999988888877555444444443333333333333332111 12223345
Q ss_pred hccCCcchhHHHHHHHHHh
Q 045069 317 AKSANVWPGAVIHGYVIQH 335 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~ 335 (554)
...++...|...+....+.
T Consensus 152 L~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 152 LCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHTTBHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHH
Confidence 5567777777776665544
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.36 E-value=14 Score=28.25 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVK 451 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 451 (554)
+..+-++.+....+.|++.....-+++|.+.+|+..|.++|+.++.+ ..+....|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 44555666667778999999999999999999999999999999875 4444446666554
No 366
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.08 E-value=34 Score=28.07 Aligned_cols=51 Identities=4% Similarity=0.046 Sum_probs=24.5
Q ss_pred HHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHH
Q 045069 345 SALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFF 395 (554)
Q Consensus 345 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 395 (554)
..+++.+...|++-+|.++.+.....+......++.+..+.+|...=..++
T Consensus 93 ~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 93 EEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHH
Confidence 344455555666666666665544333333344444444444443333333
No 367
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=78.95 E-value=6.5 Score=28.64 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=36.3
Q ss_pred HHhcCChHHHHHHHHHHHhcCC----CC-----chhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 485 CHIYGNSDLAEIVAHQLFENDP----RK-----GAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p----~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
..+.||+..|.+.+.+..+... .. ......++..+...|++++|.+.+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3466777777777666666521 11 233445677788889999999999888753
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=78.92 E-value=38 Score=33.02 Aligned_cols=133 Identities=9% Similarity=-0.037 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCCChhH--HHHHHHHHHhcCCchhHHHHhccCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHhHHcCC
Q 045069 25 LHALVAKASLLRDPFY--ATKLVRLYALNNVLPSARILFDKTPQRSVF--LWNSIIRAYALAHRFNDAKSLFKNLLRTQL 100 (554)
Q Consensus 25 ~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 100 (554)
+.+.+.+.|..|+... ..+.+...++.|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..+++ .|.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~ 92 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGK 92 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCC
Confidence 3455555676665432 334556666777777666666554333221 11233445556777666544443 332
Q ss_pred CCCcc---cHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhH--HHHHHHHHHcCCCHhHHHHhhccc
Q 045069 101 KPDNF---TYACITRACSENSDLPGLRFVHGGAIVSGLGRDSIT--SSALVTAYSKLSLIDEAIKVFDGV 165 (554)
Q Consensus 101 ~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 165 (554)
..+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+..+++.-
T Consensus 93 ~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g 158 (413)
T PHA02875 93 FADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK 158 (413)
T ss_pred cccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 11110 1122333444555543 4444455565554321 122334445566666666555543
No 369
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.37 E-value=96 Score=32.82 Aligned_cols=219 Identities=15% Similarity=0.021 Sum_probs=108.2
Q ss_pred HHHhcCChhhHHHHHhhc----CCCCh-------hhHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHH
Q 045069 249 MYARCNCMNSAYHVFNSL----FHPDL-------VTWSALIT-GYSQQGDYGKALYYFRKLNMQ----GKKADPVLIASV 312 (554)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~----~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~l 312 (554)
......++++|..++.+. +.|+. ..|+.|-. .....|+++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345566777777776665 22221 12333322 234567888888877766543 223444555666
Q ss_pred HHHHhccCCcchhHHHHHHHHHhcCCchHHHH---HHH--HHHHHccCChH--HHHHHHhccC-----CCCc-----chH
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVS---SAL--VDMYSKCGYLG--LGIQVFETMS-----ERNI-----ITY 375 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~g~~~--~A~~~~~~~~-----~~~~-----~~~ 375 (554)
..+..-.|++++|..+.....+..-..+...+ ..+ ...+...|+.. +....|.... +... .++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 66777788888888887776554222222222 222 23345556322 2222232222 1111 233
Q ss_pred HHHHHHHHcC-CChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHH
Q 045069 376 NSVILGLGLH-GFTYQAFEFFRDIIEKGLNPDEST--FSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIY 448 (554)
Q Consensus 376 ~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 448 (554)
..+..++.+. +...++..-++--......|-... +..|+......|+.++|...+.++..- ...+. -.+-..
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~ 662 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHH
Confidence 3344444331 111222222222222212222222 235667777889999998888888763 33332 111122
Q ss_pred HHH--HHHhcCChHHHHHHHHh
Q 045069 449 MVK--LLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 449 l~~--~~~~~g~~~~A~~~~~~ 468 (554)
.++ .....|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 22456888887777665
No 370
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.34 E-value=23 Score=29.94 Aligned_cols=72 Identities=15% Similarity=0.015 Sum_probs=30.2
Q ss_pred HHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHh---cCCCCHhHHHHHHHHHHcCCCHhHH
Q 045069 86 NDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVS---GLGRDSITSSALVTAYSKLSLIDEA 158 (554)
Q Consensus 86 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A 158 (554)
+.|+..|-.+...+.--++.....|...|. ..+.+++.+++-...+. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444432222222222333332 34455555554444432 1134445555555555555554443
No 371
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.27 E-value=15 Score=26.93 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 289 KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
+..+-++.+....+.|++......+.+|.+.+++..|.++++-++.+-- +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHHH
Confidence 4444555555556677777777777777777777777777776665431 22225554443
No 372
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.65 E-value=34 Score=27.25 Aligned_cols=76 Identities=11% Similarity=0.147 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCchhHHHHhccCC---------CCCcchHHHHHHHHHhcCC-hHHHHHHHHHhHHcCCCCCcccHHHH
Q 045069 41 ATKLVRLYALNNVLPSARILFDKTP---------QRSVFLWNSIIRAYALAHR-FNDAKSLFKNLLRTQLKPDNFTYACI 110 (554)
Q Consensus 41 ~~~ll~~~~~~~~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l 110 (554)
.|.++.-....++......+++.+. ..+...|+.++.+.++... ---+..+|+.|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444444444444444332 1233345555555533333 12334444555444445555555555
Q ss_pred HHHhhc
Q 045069 111 TRACSE 116 (554)
Q Consensus 111 l~~~~~ 116 (554)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555444
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.01 E-value=53 Score=29.11 Aligned_cols=250 Identities=12% Similarity=0.105 Sum_probs=124.3
Q ss_pred ChhhHHHHHhhcC----CCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC--CCCHHHHHHHHHHHhccCCc
Q 045069 255 CMNSAYHVFNSLF----HPDL---VTWSALITGYSQQGDYGKALYYFRKLNM---QGK--KADPVLIASVLAAAAKSANV 322 (554)
Q Consensus 255 ~~~~a~~~~~~~~----~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~---~~~--~~~~~~~~~l~~~~~~~g~~ 322 (554)
+.++|+.-|+++. +... ...-.++..+.+.|++++....|.++.. ..+ .-+....+.++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 4555555555551 1122 2334567777888888888877777642 111 12334556666655555554
Q ss_pred chhHHHHHHHHH----h-cCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--------C-------CcchHHHHHHHH
Q 045069 323 WPGAVIHGYVIQ----H-GFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--------R-------NIITYNSVILGL 382 (554)
Q Consensus 323 ~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~-------~~~~~~~l~~~~ 382 (554)
+....+++.-.+ . +-..--.+-+.|...|...|.+.+..++++++.+ . -...|..-|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 444444433221 1 1111122334566667777777777777766541 1 123566677778
Q ss_pred HcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----hcCCchHHHHHHHHHhHHHh---CCCCC--hhHHHHHHH
Q 045069 383 GLHGFTYQAFEFFRDIIEK-GLNPDESTFSALLCAC-----CHGGLVNDGREIFTRMTEEY---GIQAK--TEHYIYMVK 451 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~ 451 (554)
...++-.+...++++...- ..-|.+.... +|+-| .+.|++++|..-|=+.-+.+ |.+.. .--|..|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 8777777777778776642 2344444333 34443 35677777654333332212 22211 122444555
Q ss_pred HHHhcC----ChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 452 LLGLAG----NLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 452 ~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
.+.+.| +..+|.- ....|.......++.+|. .++..+-+++++.-...--++|.
T Consensus 281 MLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpF 338 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPF 338 (440)
T ss_pred HHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHH
Confidence 555544 1111110 011233444556666664 45555555555544333333443
No 374
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=76.95 E-value=60 Score=29.72 Aligned_cols=77 Identities=13% Similarity=0.002 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC-------------
Q 045069 461 EAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG------------- 523 (554)
Q Consensus 461 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 523 (554)
.|...+.++....++.....+...|.. ..+.++|...|+++.+... ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 455555444333344444444433322 2356666666666666654 44444444 444333
Q ss_pred --ChhHHHHHHHHHhhcCC
Q 045069 524 --RWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 524 --~~~~A~~~~~~~~~~~~ 540 (554)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 66666666666655544
No 375
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=76.78 E-value=5.3 Score=25.29 Aligned_cols=33 Identities=9% Similarity=0.103 Sum_probs=25.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhcCCccC
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 543 (554)
..+.++-++.+.|++++|.++.+.+++..+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 345566789999999999999999998776543
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.63 E-value=8.7 Score=26.57 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=17.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCchHHHHH
Q 045069 386 GFTYQAFEFFRDIIEKGLNPDE--STFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 386 ~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~ 428 (554)
.+.++|+..|....+.-..|.. .++..++.+++..|++.++++
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443222211 134444444444444444433
No 377
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.25 E-value=31 Score=34.16 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=56.6
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCH------------HHHHHHHHHHhcCCchHHHHHHHHHhHHHh--CCCC--------
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPDE------------STFSALLCACCHGGLVNDGREIFTRMTEEY--GIQA-------- 441 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~~------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~-------- 441 (554)
....+++|...|.-.+.. ..|+. .+...+...+...|+.+.|..+.++..=.+ -..|
T Consensus 250 hs~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred cchHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 344566777666665553 23321 123344445666677766666666543210 1111
Q ss_pred ---------ChhHHHH---HHHHHHhcCChHHHHHHHHhCCC--C-CChhhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 045069 442 ---------KTEHYIY---MVKLLGLAGNLEEAYSFIWSLPK--P-VDPAVSGALLSCCH-IYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 442 ---------~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~ 503 (554)
+...|.+ .+..+.+.|-+..|.++.+-+.. + .|+.....++..|+ ++.+++-.+++++....
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1222222 23334555666666665554321 1 14444444555443 44555555555555533
No 378
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.00 E-value=55 Score=31.39 Aligned_cols=52 Identities=10% Similarity=-0.002 Sum_probs=26.7
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHh--cCCchHHHHHHHHHhHH
Q 045069 383 GLHGFTYQAFEFFRDIIEKGLNPDES--TFSALLCACC--HGGLVNDGREIFTRMTE 435 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~ 435 (554)
.+.+++..|.++++.+.+. +.++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455666666666666654 444333 2333333332 34455666666665544
No 379
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.98 E-value=84 Score=30.91 Aligned_cols=175 Identities=10% Similarity=0.049 Sum_probs=105.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
|....-+++..+..+..+.-...+..+|..-| -+...|..++.+|... ..+.-..+++++.+..+. ++..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455667777777777777777777777654 4556677777777766 556667777777776543 3334445555
Q ss_pred HHHccCChHHHHHHHhccCC------CCc---chHHHHHHHHHcCCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc
Q 045069 350 MYSKCGYLGLGIQVFETMSE------RNI---ITYNSVILGLGLHGFTYQAFEFFRDIIE-KGLNPDESTFSALLCACCH 419 (554)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~ 419 (554)
.|.+ ++.+.+..+|..+.. .+. ..|..+...- ..+.+..+.+..+... .|..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 666777776665541 111 1333333211 2345555555555544 2333333445555567888
Q ss_pred CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
..++++|++++..+.+. -..|...-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEH--DEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence 89999999999998873 445555555566554
No 380
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.82 E-value=37 Score=30.34 Aligned_cols=84 Identities=7% Similarity=-0.089 Sum_probs=41.0
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC---CCChhhHHHHHHHHH----
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK---PVDPAVSGALLSCCH---- 486 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~---- 486 (554)
|.+++..+++.++....-+--+. .-+..+.+...-|-.|.+.|....+.++-..... ..+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 55666666666665544333221 1111233444555556666666666655554321 222333444444333
Q ss_pred -hcCChHHHHHHH
Q 045069 487 -IYGNSDLAEIVA 498 (554)
Q Consensus 487 -~~~~~~~A~~~~ 498 (554)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 346666666655
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.80 E-value=7.8 Score=38.11 Aligned_cols=99 Identities=12% Similarity=-0.023 Sum_probs=70.1
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAK--TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
..|+...|...+..... ..|. ......|.+.+.+.|....|-.++.+.. ....+-++..+..++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 35777788777766633 3332 2334556677777777777877776632 244566777888888888899999
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
++.++++.+.+|+++.+-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999998887777654444
No 382
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=75.14 E-value=45 Score=28.62 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHh
Q 045069 376 NSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 376 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 433 (554)
+..++.+.+.++.++++...++-++. +|.. .+-..++..+|-.|++++|..-++-.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33445555555666666655555552 3332 23444555556666666665544444
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.08 E-value=35 Score=30.48 Aligned_cols=83 Identities=7% Similarity=-0.022 Sum_probs=45.7
Q ss_pred HHHHHccCChHHHHHHH----hccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-----
Q 045069 348 VDMYSKCGYLGLGIQVF----ETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC----- 418 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----- 418 (554)
|+++...+++.++.... +.-.+-.......-|-.|.+.|....+.++-..-....-.-+...|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 66677777777765433 222233334445555666777777776666666555322222334555544443
Q ss_pred cCCchHHHHHHH
Q 045069 419 HGGLVNDGREIF 430 (554)
Q Consensus 419 ~~~~~~~a~~~~ 430 (554)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777776665
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=75.02 E-value=1.1e+02 Score=31.78 Aligned_cols=19 Identities=21% Similarity=0.214 Sum_probs=11.8
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 045069 282 SQQGDYGKALYYFRKLNMQ 300 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~ 300 (554)
+-.+++..|...+..|...
T Consensus 372 ~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HHCcCHHHHHHHHHHHHHH
Confidence 3456676777777766543
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.20 E-value=8.6 Score=23.18 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQG 301 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~~ 301 (554)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666443
No 386
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=73.94 E-value=34 Score=25.42 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=52.9
Q ss_pred cCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHH
Q 045069 116 ENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDW 195 (554)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 195 (554)
-....++|..+.+.+...+. ....+--.-+..+.+.|++++|+..=.....||...|-+|-. .+.|--+++...+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34466888888888887764 233333445566788999999955545555588888876654 478888888888887
Q ss_pred HHHCC
Q 045069 196 MLRLG 200 (554)
Q Consensus 196 m~~~~ 200 (554)
+..+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 76554
No 387
>PRK10941 hypothetical protein; Provisional
Probab=73.82 E-value=26 Score=31.53 Aligned_cols=69 Identities=14% Similarity=-0.033 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
+.+-.+|.+.++++.|++..+.+. .|.++.-+.--+..|.+.|.+..|..-++..++..|+++..-..-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 345566778888888888888864 366677777777788899999999999999999888887655443
No 388
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.82 E-value=94 Score=29.59 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=35.5
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cCCchHHHHHHHHHhHH
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC-HGGLVNDGREIFTRMTE 435 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~ 435 (554)
|..+.+.|-+..|+++.+-+......-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4566777777777777777777433334555555555553 56677666666666543
No 389
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=71.78 E-value=76 Score=28.51 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=65.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-------HHHHHHHhccCCcchhHHHHHH----HHHhcCCchHHHHH
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQGKKADPVLI-------ASVLAAAAKSANVWPGAVIHGY----VIQHGFELSVMVSS 345 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~~~ 345 (554)
+..-..+.+++++|+..+.++...|+..+..+. ..+...|...|+...-.+.... |.+..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344567788999999999999988877766543 4455666777766554443322 22333233444555
Q ss_pred HHHHHHHcc-CChHHHHHHHhccCC---C------CcchHHHHHHHHHcCCChHHHHHHHH
Q 045069 346 ALVDMYSKC-GYLGLGIQVFETMSE---R------NIITYNSVILGLGLHGFTYQAFEFFR 396 (554)
Q Consensus 346 ~l~~~~~~~-g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 396 (554)
+|++.+... ..++..+.+.....+ . ....-..++..+.+.|++.+|+.+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn 149 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 555555432 234444444443331 0 11112334555666666666665443
No 390
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.94 E-value=17 Score=28.33 Aligned_cols=73 Identities=12% Similarity=-0.007 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHHhCCC--C--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhH
Q 045069 440 QAKTEHYIYMVKLLGLAGNLE---EAYSFIWSLPK--P--VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYK 512 (554)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 512 (554)
.++..+--.+..++.+..+.+ +-+.+++++.. + ........|.-++.+.++++.+.++.+.+++..|++....
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 444444445555665554433 34445555431 1 1233444555566777777777777777777666665443
No 391
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.11 E-value=80 Score=28.07 Aligned_cols=182 Identities=10% Similarity=0.011 Sum_probs=118.5
Q ss_pred hcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhccCCcchhHHHHHHHHH---hcC--CchHHHHHHHHHHHHcc
Q 045069 283 QQGDYGKALYYFRKLNMQGK---KADPVLIASVLAAAAKSANVWPGAVIHGYVIQ---HGF--ELSVMVSSALVDMYSKC 354 (554)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 354 (554)
+..++++|+.-|.+..+..- ...-.....++....+.|++++....+.++.. ..+ ..+....|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 44589999999998876532 22334566788888999999999998888753 211 34556678888877766
Q ss_pred CChHHHHHHHhccCC-----CCc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC----CH-------HHHHHHH
Q 045069 355 GYLGLGIQVFETMSE-----RNI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP----DE-------STFSALL 414 (554)
Q Consensus 355 g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p----~~-------~~~~~ll 414 (554)
.+.+--.++|+.-.+ .+. .|-+.|...|...+.+.+..++++++....-.. |. ..|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666666555553321 222 344567788888899999999988888753221 11 2466667
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH-----HHhcCChHHHHHH
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL-----LGLAGNLEEAYSF 465 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~ 465 (554)
..|....+-.....++++...-..--|.+.... +++- ..+.|++++|-.-
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTD 253 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTD 253 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhH
Confidence 777777777888888887655323445544333 3333 3466888877643
No 392
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=70.10 E-value=1.8e+02 Score=32.05 Aligned_cols=257 Identities=8% Similarity=-0.077 Sum_probs=143.1
Q ss_pred HHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc
Q 045069 260 YHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL 339 (554)
Q Consensus 260 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 339 (554)
..+...+..+++.+-...+..+.+.+..+ +...+..+.. .++...-...+.++...+........+..+.+. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 34445556777777777777777776544 4444444443 344444445555554443322222333333332 4
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH 419 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 419 (554)
+..+-...+.++...+.. ....+...+..+|...-...+.++.+.+..+.. ..+. -.++...-...+.++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHH
Confidence 555555566666554322 123445555667776666677777776554322 2222 34555555556666666
Q ss_pred CCchHH-HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 045069 420 GGLVND-GREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVA 498 (554)
Q Consensus 420 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 498 (554)
.+..+. +...+..+.+ .++...-...+.++.+.|..+.+...+..+...++...-...+.++...+. +++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 655432 3344444433 356777778888888888766554445444445666666667777777665 3455555
Q ss_pred HHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 499 HQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 499 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
..+++ +| +..+....+.++.+.+.-.++...+..+.+.
T Consensus 844 ~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 844 VEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred HHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 55553 22 3455556666777654445667677666553
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.89 E-value=32 Score=24.48 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhH
Q 045069 124 RFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKS 189 (554)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 189 (554)
.++++.+.+.|+- +......+-.+-...|+.+.|.++++.++ ..+..|..++.++-..|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455555555532 23333322222234466666666666666 5666666666666666654443
No 394
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.53 E-value=1.8e+02 Score=32.00 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHH
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSC 484 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 484 (554)
|..+++.+.+.+-.+.+.++-....+. ++++ ..+++.+.+.....|.+.+|.+.+-+.+. .......+.++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 666777777788888888877777763 4444 34556677777778888888877755442 2233455566666
Q ss_pred HHhcCCh------------HHHHH-HHHHHHhcCC-CCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 485 CHIYGNS------------DLAEI-VAHQLFENDP-RKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 485 ~~~~~~~------------~~A~~-~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
+...|.+ ++.+. +.+..-+..| ..+.+|..|-..+...++|.+|-.++-+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYE 1127 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYE 1127 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHH
Confidence 6655543 33344 3333333444 3445666665566788888888766544
No 395
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.42 E-value=40 Score=24.31 Aligned_cols=43 Identities=9% Similarity=0.237 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 497 VAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 497 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.+++.++.+|++......++..+...|++++|.+.+-++++..
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3444445555555555555555556666666665555555543
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.37 E-value=22 Score=30.20 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=9.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHH
Q 045069 441 AKTEHYIYMVKLLGLAGNLEEAYSF 465 (554)
Q Consensus 441 ~~~~~~~~l~~~~~~~g~~~~A~~~ 465 (554)
|++.+|..++.++...|+.++|.++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~ 166 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQW 166 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3333333333333333333333333
No 397
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=69.34 E-value=10 Score=32.57 Aligned_cols=61 Identities=21% Similarity=0.100 Sum_probs=38.3
Q ss_pred HHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 453 LGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
..+.|+.+.|.+++.+... +.....|..+.....+.|+++.|.+.|++.++.+|++...-.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa 67 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAA 67 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchh
Confidence 3455666666666666532 445566666666666777777777777777777766554433
No 398
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.60 E-value=1.5e+02 Score=30.75 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=65.2
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPDEST---FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN 458 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 458 (554)
|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-. ..++...++ +.+ | ..|-..+.+.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG--~~Fens~El-q~I----g--------mkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAG--EHFENSLEL-QQI----G--------MKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhh--hhccchHHH-HHH----H--------HHHHHHhhccch
Confidence 4445567788888888877 7787664 444443321 122222221 111 1 123344678888
Q ss_pred hHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 459 LEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 459 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.+...++|+-. ..+.+-.-++|+.+|.+..+.+.+++|+....-..+
T Consensus 360 leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 360 LEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTM 406 (1226)
T ss_pred HHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHH
Confidence 88888877532 234445667899999999999999988765544444
No 399
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=67.39 E-value=53 Score=25.46 Aligned_cols=41 Identities=7% Similarity=0.136 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcC--CCCchhHHHHHHHHHccCChhHHHHHHHH
Q 045069 494 AEIVAHQLFEND--PRKGAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 494 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
..++|+.+.... ...+..|...+..+...|++.+|.++++.
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 566777777763 55667888888888999999999998863
No 400
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.35 E-value=87 Score=27.44 Aligned_cols=122 Identities=15% Similarity=0.027 Sum_probs=66.5
Q ss_pred hHHHHHHHHH--hcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCC-CHhHHHHHHH
Q 045069 71 LWNSIIRAYA--LAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGR-DSITSSALVT 147 (554)
Q Consensus 71 ~~~~ll~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~ 147 (554)
.|..+++++. -.+++++|++.+-.- .+.| .--.-++.++...|+.+.|..++.... +++ +......++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHH
Confidence 3566666664 346667777666211 1111 112246777777788888887776542 222 2222333333
Q ss_pred HHHcCCCHhHHHHhhcccCCCC-cchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 045069 148 AYSKLSLIDEAIKVFDGVSDPD-LVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPD 204 (554)
Q Consensus 148 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 204 (554)
. ..++.+.+|...-+...+.. ...+..++..+.....- ...++++......++
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~---~~~~~~Ll~LPl~~~ 203 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECAR---SGRLDELLSLPLDEE 203 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhh---hhHHHHHHhCCCChH
Confidence 3 55688888888877766532 44677777766644431 222445554444433
No 401
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=67.20 E-value=51 Score=24.76 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLR 97 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 97 (554)
-|..++..|-.+|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888887766
No 402
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.06 E-value=48 Score=33.14 Aligned_cols=132 Identities=13% Similarity=-0.009 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCC
Q 045069 39 FYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENS 118 (554)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 118 (554)
...+.+.+.+-++|-.++|+.+- +|... -.....+.|+.+.|.++..+.. +..-|..|..+....+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc
Confidence 45666777777777777776642 22111 1223345577777766655431 4455777777777777
Q ss_pred ChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHH
Q 045069 119 DLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDW 195 (554)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 195 (554)
++..|.+.|..... |..|+-.+...|+-+....+-....+ ....|...-+|...|+++++++++.+
T Consensus 681 ~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~--~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 681 ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKK--QGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHh--hcccchHHHHHHHcCCHHHHHHHHHh
Confidence 77777776655432 23344444444544432222222211 11123333445566777777666654
No 403
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.78 E-value=1.3e+02 Score=29.27 Aligned_cols=14 Identities=14% Similarity=0.188 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHcCC
Q 045069 390 QAFEFFRDIIEKGL 403 (554)
Q Consensus 390 ~a~~~~~~m~~~g~ 403 (554)
+..+-++.|....+
T Consensus 298 ~C~~ei~~mk~~~i 311 (413)
T PHA02875 298 KCIIELRRIKSEKI 311 (413)
T ss_pred HHHHHHHHHHhhcc
Confidence 44555666666433
No 404
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.65 E-value=75 Score=26.47 Aligned_cols=45 Identities=24% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 526 (554)
.+..|.+.|.+++|.+++++... +|++...-..|..+-.....+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccccc
Confidence 34457777888888888887777 6666555444544444444333
No 405
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.19 E-value=61 Score=32.73 Aligned_cols=85 Identities=13% Similarity=0.104 Sum_probs=65.3
Q ss_pred hcCChHHHHHHHHh-CCC-C------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 045069 455 LAGNLEEAYSFIWS-LPK-P------VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 455 ~~g~~~~A~~~~~~-~~~-~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 526 (554)
+..++..+.++|.. +.. + .-....+.+..+|....+.|.|.++++++.+.+|.++-.-.....+....|.-+
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 45667777777654 321 1 113455677778888899999999999999999999888888888889999999
Q ss_pred HHHHHHHHHhhcC
Q 045069 527 DVMKLRDDIVDNG 539 (554)
Q Consensus 527 ~A~~~~~~~~~~~ 539 (554)
+|+..+......-
T Consensus 446 ~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 446 EALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988876543
No 406
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=65.78 E-value=9.9 Score=34.09 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=24.9
Q ss_pred hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 455 LAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 455 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+.|+.++|..+|+... .+.++..+..+....-.+++.-+|.+.|-+++...|.+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 4455555555554421 1333334333333333444444555555555555554443
No 407
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=64.77 E-value=2.2e+02 Score=31.27 Aligned_cols=248 Identities=15% Similarity=0.012 Sum_probs=131.3
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAA 316 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 316 (554)
.+++.+-..-+..+.+.+..+....+...+..++...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 4555566666666666665443334444445555555555555554443221122233333322 5555555566665
Q ss_pred hccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHH-HHHHH
Q 045069 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQ-AFEFF 395 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 395 (554)
...+... ...+.. ..+ .++..+-...+.++.+.+..+. +.....+++...-...+.++...+..+. +...+
T Consensus 709 ~~~~~~~-~~~l~~-~L~---D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AALFAA-ALG---DPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HHHHHH-Hhc---CCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 5443221 122222 221 4455555556666666554432 2333445666666666667766665432 33444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh
Q 045069 396 RDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDP 475 (554)
Q Consensus 396 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 475 (554)
..+.+ .+|...-...+.++.+.|....+...+..+.+ .++..+-...+.++.+.+. +++...+..+...++.
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~D~~~ 852 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEALTDPHL 852 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHhcCCCH
Confidence 44443 35666667777777777776555444444433 2455555666777776665 4455665555556667
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
..-...+.++.+......+...+..+.+
T Consensus 853 ~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 853 DVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6666677777665334456666665555
No 408
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.43 E-value=35 Score=24.24 Aligned_cols=65 Identities=9% Similarity=0.053 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHH
Q 045069 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAK 89 (554)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 89 (554)
..++....+.|+ .+..-...+-.+-...|+.+.|+++++.++ ..+..|..++.++-..|.-.-|.
T Consensus 22 ~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 567777777774 333333333333346688888999988888 77788888888888887765554
No 409
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.23 E-value=1.1e+02 Score=27.65 Aligned_cols=60 Identities=15% Similarity=0.027 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
++....+.|..+|.+.+|.++.++.. .+.+...+..++..+...||--.|...++++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 45567788899999999999999875 3678888899999999999988888888776553
No 410
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=63.24 E-value=1.4e+02 Score=28.53 Aligned_cols=26 Identities=8% Similarity=-0.210 Sum_probs=13.9
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCC
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPD 406 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~ 406 (554)
.+.+.+++..|.++|+++.+....|+
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~ 164 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAV 164 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChh
Confidence 34455566666666666655544333
No 411
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=62.64 E-value=37 Score=26.96 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 460 EEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
+.|.++.+-|. ...............|++..|.++.+.++..+|++.......+++|.+.|.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34444444442 233334445556788999999999999999999999999998888877654
No 412
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.48 E-value=1.2e+02 Score=27.31 Aligned_cols=141 Identities=15% Similarity=0.106 Sum_probs=67.1
Q ss_pred HHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHhccCCcc-hhHHHHHHHHHh---c--CCchHHHHHHHHH
Q 045069 280 GYSQQGDYGKALYY----FRKLNMQGKKADPVLIASVLAAAAKSANVW-PGAVIHGYVIQH---G--FELSVMVSSALVD 349 (554)
Q Consensus 280 ~~~~~g~~~~a~~~----~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~---~--~~~~~~~~~~l~~ 349 (554)
.+.+.|+...|.++ ++-..+.+.+++......++..+...+.-+ .-..+.+.+.+. + ...++.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 34555555444333 333334566666666566665555443222 223333333322 1 1246777888888
Q ss_pred HHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCchHHHHH
Q 045069 350 MYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTF-SALLCACCHGGLVNDGRE 428 (554)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~ 428 (554)
.|.+.|++.+|...|-.-.+++...+..++.- -...|...+...| ...+--|.-.++...|..
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~----------------~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTDPSAFAYVMLLEE----------------WSTKGYPSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHH----------------HHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred HHHhhccHHHHHHHHHhcCChhHHHHHHHHHH----------------HHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999888877654433322222112211 1122222222222 222334566788888888
Q ss_pred HHHHhHHH
Q 045069 429 IFTRMTEE 436 (554)
Q Consensus 429 ~~~~~~~~ 436 (554)
+++...++
T Consensus 163 ~~~~f~~~ 170 (260)
T PF04190_consen 163 LFDTFTSK 170 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777664
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.03 E-value=45 Score=25.04 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=20.3
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIE 400 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 400 (554)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 567777777777777777777777766
No 414
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=61.53 E-value=1.7e+02 Score=28.83 Aligned_cols=242 Identities=7% Similarity=-0.051 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC------CcchhHHHHHHHHHhc-C-CchHHHHHHHHHHHHccCCh-
Q 045069 287 YGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA------NVWPGAVIHGYVIQHG-F-ELSVMVSSALVDMYSKCGYL- 357 (554)
Q Consensus 287 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~- 357 (554)
.+....+|++.... .|+...+...|..|...- .+.....+++.....+ . +.....|..+.-.++.....
T Consensus 298 ~s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r 375 (568)
T KOG2396|consen 298 ESRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAR 375 (568)
T ss_pred HHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHh
Confidence 34445666665543 455555555565554332 2333334444443322 2 22344555555555554443
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHcCC-ChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-hH--HHHHHHHH
Q 045069 358 GLGIQVFETMSERNIITYNSVILGLGLHG-FTYQA-FEFFRDIIEKGLNPDESTFSALLCACCHGGL-VN--DGREIFTR 432 (554)
Q Consensus 358 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~--~a~~~~~~ 432 (554)
+-|..+..+....+...|-.-+....+.. +.+-. .+++......-..+-...|+... .++ .+ .-..++..
T Consensus 376 ~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a 450 (568)
T KOG2396|consen 376 EVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISA 450 (568)
T ss_pred HHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHH
Confidence 33444444555566666655555554322 22221 12222333221122222333322 222 11 11223333
Q ss_pred hHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHH--hcCChHHHHHHHHHHHhcCCC
Q 045069 433 MTEEYGIQAKTEH-YIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCH--IYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 433 ~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~ 507 (554)
... -..|+..+ -+.+++.+.+.|-.++|...+.++.. +++...+..++..-. ..-+...+...|+.+......
T Consensus 451 ~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 451 LLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGA 528 (568)
T ss_pred HHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCC
Confidence 333 23444444 46788888889999999999988653 556667766665422 223477788889988888668
Q ss_pred CchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 508 KGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 508 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++..+......-...|..+.+-.++.++++
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 888887776666788999988888888765
No 415
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=61.08 E-value=30 Score=21.32 Aligned_cols=33 Identities=3% Similarity=0.016 Sum_probs=18.7
Q ss_pred hcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHH
Q 045069 115 SENSDLPGLRFVHGGAIVSGLGRDSITSSALVT 147 (554)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 147 (554)
.+.|-..++..+++.|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 344555566666666666666555555554443
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=60.98 E-value=48 Score=31.81 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=16.4
Q ss_pred CchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 508 KGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 508 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
..++++.++-+|.-.+++.+|.+.|...+
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666655543
No 417
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.67 E-value=1.4e+02 Score=28.42 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHhcCCchhHHHHhccCCC------CCcchHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 045069 39 FYATKLVRLYALNNVLPSARILFDKTPQ------RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRT 98 (554)
Q Consensus 39 ~~~~~ll~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 98 (554)
..+.-+.+-|..+|+++.|.+.+.+... ..+..|-.+|..-.-.|+|........+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4566777888899999999999988652 23345666777777888888877777766654
No 418
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=60.53 E-value=2.1e+02 Score=29.49 Aligned_cols=62 Identities=15% Similarity=-0.033 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 045069 35 LRDPFYATKLVRLYALNNVLPSARILFDKTPQRS-VFLWNSIIRAYALAHRFNDAKSLFKNLLRT 98 (554)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 98 (554)
.+.+..++.|++.+.... .++-..+++++.. . ...+..+++++...|-.....-+.+.+...
T Consensus 307 ~~~~~~f~~lv~~lR~~~-~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 307 EPAAAKFLRLVRLLRTLS-EEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred cchHHHHHHHHHHHHhCC-HHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 345666777766655443 4555555555443 2 456777777777777655555555544443
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.49 E-value=77 Score=24.62 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHH
Q 045069 390 QAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
.+.++|+.|..+|+--... -|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555544433322 34444444455555555555554
No 420
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.23 E-value=1.3e+02 Score=26.90 Aligned_cols=74 Identities=8% Similarity=0.084 Sum_probs=43.7
Q ss_pred CChhhHHHHHHHHHhcCChH-HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCe
Q 045069 473 VDPAVSGALLSCCHIYGNSD-LAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGV 546 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 546 (554)
.+-..|..--......|+.. .-+++.+.++..+..+-.++..--+++...+.++.-+.+..++++..+..+.++
T Consensus 110 KNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 110 KNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred cchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 34444433222233344444 555666666666666666666666666666777777777777777666666643
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.99 E-value=8.3 Score=36.97 Aligned_cols=100 Identities=6% Similarity=-0.034 Sum_probs=73.8
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCC
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAKT-EHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGN 490 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 490 (554)
+....+.++++.|..++.++.+ +.|+. ..|..-..++.+.+++..|+.=+..+.. +.....|..-..++...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4556778899999999999976 56654 3444445778888888888876666542 3334455555567778888
Q ss_pred hHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 491 SDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 491 ~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
+.+|...|+......|+++.+...+-
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~ 113 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKID 113 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence 99999999999999999888776664
No 422
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.63 E-value=2.3e+02 Score=29.71 Aligned_cols=170 Identities=8% Similarity=-0.008 Sum_probs=93.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCC---cccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHc
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPD---NFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSK 151 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 151 (554)
-++-+.+.+.+++|++..+.-.. ..|. .......+..+.-.|+++.|-...-.|... +..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 46677888999999988776533 3332 234566777778888888887777666532 45555555666666
Q ss_pred CCCHhHHHHhhcccCC-CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHH
Q 045069 152 LSLIDEAIKVFDGVSD-PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGF 230 (554)
Q Consensus 152 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 230 (554)
.++......++-.-+. .+...|..++..+.. .+.. .+++...+ .+...|..+--.-+...+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~----Wp~~Lys~l~iisa~~~q~~-------- 499 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK---GFLELIKE----WPGHLYSVLTIISATEPQIK-------- 499 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH---HHHHHHHh----CChhhhhhhHHHhhcchHHH--------
Confidence 6665544333322222 456678888877776 2222 22222222 12222322211111111110
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCC
Q 045069 231 CLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPD 270 (554)
Q Consensus 231 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 270 (554)
+. ..+......|+..|...+++..|..++-....++
T Consensus 500 --q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 500 --QN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred --hh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 00 1112233347788888888888888877766544
No 423
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.98 E-value=65 Score=29.52 Aligned_cols=146 Identities=10% Similarity=0.033 Sum_probs=0.0
Q ss_pred hHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 357 LGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 357 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
+.+|+++|++..+....+|+ +..+.+.--...+.+.+.....-...-..+..+..+.|+..+|.+.++.+.+.
T Consensus 232 i~~AE~l~k~ALka~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke 304 (556)
T KOG3807|consen 232 IVDAERLFKQALKAGETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKE 304 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Q ss_pred hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------------------------CCCChhhHHHHHHHHHhcCCh
Q 045069 437 YGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-------------------------KPVDPAVSGALLSCCHIYGNS 491 (554)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~~ 491 (554)
..+..-..+...++.++....-+.+...++.+-. ..|+...-..|-.+-..
T Consensus 305 ~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~---- 380 (556)
T KOG3807|consen 305 FPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEIN---- 380 (556)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHH----
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHH
Q 045069 492 DLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
|.+.+.++.+-+|.-|.+...+
T Consensus 381 --AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 381 --AVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred --HHHHHHHHhhcCCCCcHHHHHH
No 424
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=58.87 E-value=1e+02 Score=29.37 Aligned_cols=136 Identities=11% Similarity=-0.044 Sum_probs=78.2
Q ss_pred chHHHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHhcCCchHHHHHHHHHhHHHhCCCCC
Q 045069 373 ITYNSVILG--LGLHGFTYQAFEFFRDIIEKGLNPDESTFSA--------LLCACCHGGLVNDGREIFTRMTEEYGIQAK 442 (554)
Q Consensus 373 ~~~~~l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 442 (554)
..|-.++-. +...+++.+|.++-+.....-..-|..|+.. +-.++...|+...-..++......-.+..|
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Confidence 344444443 3345778888887777665433334444332 233455566666666666655443233333
Q ss_pred ----hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCC--hhhH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 443 ----TEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVD--PAVS----GALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 443 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
....|.+++.|...+.++.|.++..+...+.. ..-| .-+...-+-++++..|.+.+-++....|.+
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 34456777777778888888888877653211 1111 223333455677888888888888777763
No 425
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=58.85 E-value=32 Score=19.62 Aligned_cols=16 Identities=19% Similarity=-0.141 Sum_probs=6.6
Q ss_pred HHHHHhcCChHHHHHH
Q 045069 482 LSCCHIYGNSDLAEIV 497 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~ 497 (554)
...+...|++++|+.+
T Consensus 8 a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 8 AYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHTT-HHHHHHH
T ss_pred HHHHHHHhhHHHHHHH
Confidence 3334444444444444
No 426
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=57.68 E-value=28 Score=31.95 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=27.2
Q ss_pred HHHhcCChHHHHHHHHhCC------CCCChhhHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 045069 452 LLGLAGNLEEAYSFIWSLP------KPVDPAVSG--ALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~------~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
...+.++.++|+++++++. ..|++..+. ....++...||.+++.+.+.....
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344556666666666653 233444332 233344455666666666665555
No 427
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.47 E-value=65 Score=25.80 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=44.8
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC
Q 045069 90 SLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 90 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (554)
++.+.+.+.|++++..- ..++..+...++.-.|.++++.+.+.++..+..|.-.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34556667787765543 35667777777778999999999998877766665555666766664
No 428
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=55.12 E-value=1.8e+02 Score=27.15 Aligned_cols=131 Identities=11% Similarity=-0.016 Sum_probs=72.9
Q ss_pred CCcchHHHHHHHHHcC---CC---------hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 370 RNIITYNSVILGLGLH---GF---------TYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~~---~~---------~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
.|+.+|-.++..--.. +. .+.-+.+++++++. .|+ ..-...++..+.+..+.+...+-++++...
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566777776542221 11 34556677777775 343 335666677777777777777777777763
Q ss_pred hCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhCC-------CCC----------Chh---hHHHHHHHHHhcCChHH
Q 045069 437 YGIQAKTEHYIYMVKLLGL---AGNLEEAYSFIWSLP-------KPV----------DPA---VSGALLSCCHIYGNSDL 493 (554)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-------~~~----------~~~---~~~~l~~~~~~~~~~~~ 493 (554)
.+-+...|...++.... .-.+++..++|.+.. ... ... .+..+...+...|..+.
T Consensus 95 --~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 95 --NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred --CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 34456666666665543 224455555554421 110 011 11222223456677777
Q ss_pred HHHHHHHHHhc
Q 045069 494 AEIVAHQLFEN 504 (554)
Q Consensus 494 A~~~~~~~~~~ 504 (554)
|..+++.+++.
T Consensus 173 Ava~~Qa~lE~ 183 (321)
T PF08424_consen 173 AVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHH
Confidence 77777777776
No 429
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=54.87 E-value=66 Score=32.14 Aligned_cols=135 Identities=13% Similarity=-0.019 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHhcC--CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCC-CCC--Chhh
Q 045069 404 NPDESTFSALLCACCHG--GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLG-LAGNLEEAYSFIWSLP-KPV--DPAV 477 (554)
Q Consensus 404 ~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~~--~~~~ 477 (554)
-|+..+...++.-.... ..-+-+-.++-.|.. -+.|--...| +...|. ..|+...|.+.+..+. ..| ....
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666666655443332 223344455555533 2333222222 233444 4689999998887753 222 3445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
...|.....+.|....|-.++.+.+......|-++..++.+|....+.+.|++.++.+++....
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 6677778888888899999999999999888899999999999999999999999998876543
No 430
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.54 E-value=1.8e+02 Score=26.89 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=10.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIW 467 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~ 467 (554)
+.....-|++.|+.+.|++.++
T Consensus 107 ~~~kaeYycqigDkena~~~~~ 128 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALR 128 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHH
Confidence 3344444445555555544443
No 431
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=53.94 E-value=50 Score=20.33 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=21.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 045069 281 YSQQGDYGKALYYFRKLNMQGKKADPVLIASVLA 314 (554)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 314 (554)
..+.|-.+++...+++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777777777666666655543
No 432
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=53.71 E-value=32 Score=33.21 Aligned_cols=103 Identities=12% Similarity=0.049 Sum_probs=73.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhc
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSA-LLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLA 456 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 456 (554)
+..+...+.++.|..++.+.++ +.||...|-. -..++.+.+++..|+.=+.+..+. .|+ ...|..-..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4456677889999999999999 7888775443 347889999999999888887763 343 44455555566677
Q ss_pred CChHHHHHHHHhCC-CCCChhhHHHHHHHHH
Q 045069 457 GNLEEAYSFIWSLP-KPVDPAVSGALLSCCH 486 (554)
Q Consensus 457 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~ 486 (554)
+.+.+|...|+... ..|+..-....+.-|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 78888888888764 3566555555555443
No 433
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=53.68 E-value=54 Score=23.16 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=21.9
Q ss_pred HHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCc
Q 045069 48 YALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDN 104 (554)
Q Consensus 48 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 104 (554)
.++.|+++-...+++.-...+. -+..+...+..|+. ++++.+.+.|..++.
T Consensus 4 A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~----~~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 4 AAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNL----EIVKLLLENGADINS 54 (89)
T ss_dssp HHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTH----HHHHHHHHTTTCTT-
T ss_pred HHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCH----HHHHHHHHhcccccc
Confidence 3455555555555553332222 11133333444543 344444445555444
No 434
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=53.61 E-value=1.3e+02 Score=27.39 Aligned_cols=46 Identities=7% Similarity=0.008 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhCCChh-hHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhH
Q 045069 172 LCNSMISGFAHCGFWD-KSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQG 226 (554)
Q Consensus 172 ~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 226 (554)
.|..++++---+.+-+ -|.+.++.+ .+|..++.+++..|+.+...-
T Consensus 296 vWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 296 VWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred eHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHHHHH
Confidence 5777766543332211 233334433 357788888888888765543
No 435
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=53.59 E-value=29 Score=31.38 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=32.1
Q ss_pred CChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 045069 269 PDLV-TWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIAS 311 (554)
Q Consensus 269 ~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 311 (554)
++.. -|+.-|....+.||+++|+.++++.++.|+.--..+|-.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 3444 366888888999999999999999988887655555543
No 436
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.96 E-value=61 Score=29.82 Aligned_cols=85 Identities=9% Similarity=-0.052 Sum_probs=52.0
Q ss_pred HHHHhcCChHHHHHHHHhCC--C----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--K----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
+-|.+..++..|...|.+.. . ..+...|..-..+-...|++..|+.-..+++..+|.+.-.|..=+.++....+
T Consensus 89 N~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 89 NEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence 33445555555555554432 1 11233344444444556777788888888888888887777777777777777
Q ss_pred hhHHHHHHHHH
Q 045069 525 WDDVMKLRDDI 535 (554)
Q Consensus 525 ~~~A~~~~~~~ 535 (554)
+++|...+++.
T Consensus 169 ~~~a~nw~ee~ 179 (390)
T KOG0551|consen 169 FAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHhhh
Confidence 66666665554
No 437
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.95 E-value=27 Score=30.10 Aligned_cols=52 Identities=12% Similarity=0.108 Sum_probs=35.7
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
..+.++.+.+.+++.+..+ -.+-....|-.+...-.+.|+.+.|.+-+++..
T Consensus 5 ~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 4566777777777777755 234446667777777777888888877777653
No 438
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.88 E-value=24 Score=31.89 Aligned_cols=41 Identities=32% Similarity=0.356 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 045069 172 LCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLI 212 (554)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 212 (554)
-|+..|....+.||+++|+.++++.++.|+.--..+|...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46789999999999999999999999988776555554433
No 439
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=52.55 E-value=32 Score=19.94 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.+|..|+++-...+++++|.+=|++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888999999888888765
No 440
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=51.98 E-value=1.7e+02 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=28.4
Q ss_pred HHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH
Q 045069 362 QVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES 408 (554)
Q Consensus 362 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 408 (554)
.+|+-..+|.+.....++..+. .+++++|.+.+.++.+.|+.|...
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 3444444566666666666554 345777777777777777766543
No 441
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.67 E-value=1.7e+02 Score=25.68 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=13.8
Q ss_pred hcCChHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045069 455 LAGNLEEAYSFIWSLPKPVDPAVSGALLSCCH 486 (554)
Q Consensus 455 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 486 (554)
.++...||..+.+..........+..++..+.
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 34555555555544443222334444444433
No 442
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.36 E-value=32 Score=22.64 Aligned_cols=26 Identities=8% Similarity=0.208 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
.-.+|.++...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455566666666666666655544
No 443
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=51.34 E-value=2.9e+02 Score=28.39 Aligned_cols=75 Identities=9% Similarity=-0.070 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC
Q 045069 292 YYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS 368 (554)
Q Consensus 292 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 368 (554)
..++.+...-.-.+......++..|.+.|-.+.+..+.+.+-.+-. ...-|..-+..+.++|+...+..+-+.+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334443333334444555566666666666666666655543322 12334555555666666665555544433
No 444
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.26 E-value=1e+02 Score=23.07 Aligned_cols=80 Identities=18% Similarity=0.088 Sum_probs=39.4
Q ss_pred CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 045069 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAH 499 (554)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 499 (554)
....++|..+.+-+... +. ....+--.-+..+.+.|++++|+..=. -...||...|..| +-.+.|-.+++...+.
T Consensus 19 ~HcH~EA~tIa~wL~~~-~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~-~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQE-GE-MEEVVALIRLSSLMNRGDYQEALLLPQ-CHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp TT-HHHHHHHHHHHHHT-TT-THHHHHHHHHHHHHHTT-HHHHHHHHT-TS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHhhHHHHHHHHhcc-cCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 34567777777776653 22 112222233345667888888822211 1224555555444 4456777777777666
Q ss_pred HHHhc
Q 045069 500 QLFEN 504 (554)
Q Consensus 500 ~~~~~ 504 (554)
++-..
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 55433
No 445
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=51.15 E-value=34 Score=30.96 Aligned_cols=79 Identities=5% Similarity=-0.123 Sum_probs=52.0
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHH
Q 045069 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGA-LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVM 514 (554)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 514 (554)
....|+..|...+.-..+.|.+.+.-.++.+.. .|.+...|.. ...-+...++++.+..++.+.++.+|++|.++..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 345566667666666666677777777776653 2445555543 2223556778888888888888888888877765
Q ss_pred HH
Q 045069 515 LS 516 (554)
Q Consensus 515 l~ 516 (554)
..
T Consensus 182 yf 183 (435)
T COG5191 182 YF 183 (435)
T ss_pred HH
Confidence 54
No 446
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.09 E-value=58 Score=27.58 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=33.5
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
..|++..+..++.++...|+.++|.+..+++....|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999999988
No 447
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=50.62 E-value=1e+02 Score=23.83 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=32.5
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.-|++.....-+++|.+.+|+..|.++++.....-++...+|-.+
T Consensus 80 lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 80 LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYY 124 (149)
T ss_pred cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 467788888888888888888888888887777655544444443
No 448
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=49.77 E-value=1.8e+02 Score=25.58 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=59.7
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh-hHHHHHHHHHHhcCCh
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPDEST-FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT-EHYIYMVKLLGLAGNL 459 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 459 (554)
|...+++..|+..|.+.+. +.|+..+ |..-+.++.+..+++.+..--.+..+ +.|+. .....+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq---l~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ---LDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh---cChHHHHHHHHHHHHHHhhccc
Confidence 3444567777777766666 6677654 44455566666677666655555443 44543 2333444555556666
Q ss_pred HHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 045069 460 EEAYSFIWSL-------PKPVDPAVSGALLSCCHIYGNSDLAEIVAH 499 (554)
Q Consensus 460 ~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 499 (554)
++|+..+.+. +.++...++..|..+-.+.=...+..++.+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 6666666554 123344444555444333333334444433
No 449
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=48.68 E-value=1.1e+02 Score=34.09 Aligned_cols=121 Identities=12% Similarity=0.028 Sum_probs=84.2
Q ss_pred HHhcCCchHHHHH------HHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCChhhHH
Q 045069 416 ACCHGGLVNDGRE------IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP----------KPVDPAVSG 479 (554)
Q Consensus 416 ~~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~ 479 (554)
.....|.+.++.+ ++...... -.++....|..+...+.+.|+.++|+.+-.+.. .+.+...+.
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~-~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGV-LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhh-cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 3444566666665 55543331 234457788899999999999999998877643 122344455
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc--------CCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFEN--------DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.+...+...+....|...+.++... .|+.......+..++...++++.|+++++.+..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555666677888888888888776 355555666776667777999999999998876
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.59 E-value=1.2e+02 Score=25.32 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=8.3
Q ss_pred HHhcCChHHHHHHHHhC
Q 045069 453 LGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~ 469 (554)
|.+.|.+++|.+++++.
T Consensus 121 Cm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 121 CMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHhcCchHHHHHHHHHH
Confidence 44445555555555443
No 451
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.12 E-value=2.7e+02 Score=27.14 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=27.2
Q ss_pred HHHHHHHHHh---CCChhhHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045069 173 CNSMISGFAH---CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISG 214 (554)
Q Consensus 173 ~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 214 (554)
...+++++.+ ..+.+.|+..+..|.+.|..|....-..++.+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4444555544 47888899999999888877764443333333
No 452
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=47.52 E-value=2.3e+02 Score=26.12 Aligned_cols=165 Identities=15% Similarity=0.155 Sum_probs=88.3
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC-CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC
Q 045069 328 IHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS-ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD 406 (554)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 406 (554)
+++-+..+++-+.......-++.+.+.+..+-+..++.... ..+. -+.+.. +-.+++.-++++.+. +.|-
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~--p~a~~e------kr~~Vla~lkeLe~e-v~pi 92 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDM--PNALVE------KRTEVLAELKELEEE-VAPI 92 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccc--hHHHHH------HHHHHHHHHHHHHHH-HHHH
Confidence 44555556666677777777777888888888888887763 1111 111110 011122222222221 1111
Q ss_pred HHHH--HHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHH---HhCCCCCChhhHHH
Q 045069 407 ESTF--SALLCACCHGGLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFI---WSLPKPVDPAVSGA 480 (554)
Q Consensus 407 ~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~~~~~~~~~ 480 (554)
.... --++... ..-.+....++.+.+++++.|+ ..+...+.+....+|++..|-.++ +....+++....+.
T Consensus 93 v~~le~Pd~~~~~---~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsa 169 (432)
T KOG2758|consen 93 VKVLENPDLIAAL---RSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSA 169 (432)
T ss_pred HHHHcCHHHHHHH---HhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHH
Confidence 0000 0011111 1112235677777777788887 455566677777889998887654 44455666644444
Q ss_pred HHHHHH---hcCChHHHHHHHHHHHhc
Q 045069 481 LLSCCH---IYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 481 l~~~~~---~~~~~~~A~~~~~~~~~~ 504 (554)
+-.-++ -.-+++.|.+-+.++.+.
T Consensus 170 lwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 170 LWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 433332 345788888777776665
No 453
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.75 E-value=1.5e+02 Score=29.40 Aligned_cols=36 Identities=3% Similarity=-0.110 Sum_probs=20.2
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHh
Q 045069 105 FTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSI 140 (554)
Q Consensus 105 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 140 (554)
..+..++.++...+....+..+++.+.+.|..|...
T Consensus 249 ~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 249 EFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 334444444444444456777777777777655433
No 454
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.62 E-value=27 Score=27.17 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=23.3
Q ss_pred cCChHHHHHHHHHhHHcCCCCCcccHHHHHHHh
Q 045069 82 AHRFNDAKSLFKNLLRTQLKPDNFTYACITRAC 114 (554)
Q Consensus 82 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 114 (554)
.|.-.+|-.+|++|++.|-+|| .|+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3666778999999999998876 466666554
No 455
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.50 E-value=2.5e+02 Score=28.19 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=17.1
Q ss_pred HHHHHHHccCChHHHHHHHhccC
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMS 368 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~ 368 (554)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45666778888888888877775
No 456
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.88 E-value=1.6e+02 Score=31.31 Aligned_cols=133 Identities=15% Similarity=0.064 Sum_probs=62.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAY 463 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 463 (554)
..|+.+.|++.-.++ -+..+|..|.......|+.+-|+..|++.+. |..|.-.|.-.|+.++-.
T Consensus 655 e~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHH
Confidence 345555555443322 2344566666666666666666666655533 233334445556655555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccC
Q 045069 464 SFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 543 (554)
++.+.+....|.... .....-.|++++-..+++..-.. +-.|. .-...|.-++|.++.+++..+....+
T Consensus 719 Km~~iae~r~D~~~~---~qnalYl~dv~ervkIl~n~g~~----~layl----ta~~~G~~~~ae~l~ee~~~~~~~lP 787 (1202)
T KOG0292|consen 719 KMMKIAEIRNDATGQ---FQNALYLGDVKERVKILENGGQL----PLAYL----TAAAHGLEDQAEKLGEELEKQVPSLP 787 (1202)
T ss_pred HHHHHHHhhhhhHHH---HHHHHHhccHHHHHHHHHhcCcc----cHHHH----HHhhcCcHHHHHHHHHhhccccCCCC
Confidence 554444333232221 11112345555555555443111 11111 12245666777777777665444433
No 457
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.82 E-value=1.5e+02 Score=23.42 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHhcCC---chHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 404 NPDESTFSALLCACCHGG---LVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 404 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
.++..+-..+.+++.+.. +..+.+.+++++.++ ..+.. ......|.-++.+.+++++++++++.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 344445445555555544 344555566666541 11111 223334555566666666666666553
No 458
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=45.72 E-value=86 Score=28.08 Aligned_cols=59 Identities=19% Similarity=-0.026 Sum_probs=27.4
Q ss_pred HHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 452 LLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
.+.++++++.|....++.. .+.++.-+.--+..|.+.|....|.+-++...+.-|+++.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3444555555555544432 1334444444444455555555555555555554444443
No 459
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.66 E-value=76 Score=28.24 Aligned_cols=21 Identities=5% Similarity=0.007 Sum_probs=10.7
Q ss_pred HHHHHhcCCchHHHHHHHHHh
Q 045069 413 LLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~ 433 (554)
+...|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334445555555555555554
No 460
>PRK09462 fur ferric uptake regulator; Provisional
Probab=45.62 E-value=1.2e+02 Score=24.33 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=40.6
Q ss_pred HHhHHcCCCCCcccHHHHHHHhhcC-CChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH
Q 045069 93 KNLLRTQLKPDNFTYACITRACSEN-SDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (554)
+.+.+.|++++..-. .++..+... +..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 6 ~~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 345566777555433 344444443 46778899999998888777776665666777777654
No 461
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=45.17 E-value=2.2e+02 Score=25.17 Aligned_cols=162 Identities=12% Similarity=0.031 Sum_probs=83.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC-HGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA 456 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (554)
++..+-+.|+++++...++++.+.+...+..--+.+-.+|- ..|....+++++..+.++..-..+ .....++..|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~k 85 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKKK 85 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHHH
Confidence 45566678888888888888888766666555555555542 234555666666666554222212 2223333333211
Q ss_pred ------CChHHHHHHHHhCCC----CCChhhHHHHHHH-H----Hhc--C-----ChHHHHHHHHHHHhc-----CCCCc
Q 045069 457 ------GNLEEAYSFIWSLPK----PVDPAVSGALLSC-C----HIY--G-----NSDLAEIVAHQLFEN-----DPRKG 509 (554)
Q Consensus 457 ------g~~~~A~~~~~~~~~----~~~~~~~~~l~~~-~----~~~--~-----~~~~A~~~~~~~~~~-----~p~~~ 509 (554)
.--.+.+++++.... .+....|..-+.+ | +.. | -.+.|.+.|+++.+. .|.+|
T Consensus 86 ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 86 IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Confidence 122345555555321 1112222111111 1 111 1 236677777777665 45665
Q ss_pred hhHHHHH----HHHHccCChhHHHHHHHHHhhcCC
Q 045069 510 AYKVMLS----NTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 510 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
....... -.|...|+.++|.++.++..+..+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4333222 235668999999999888876543
No 462
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.52 E-value=4e+02 Score=28.00 Aligned_cols=188 Identities=12% Similarity=0.085 Sum_probs=98.3
Q ss_pred HHHHHHHHhcCCc---hHHHHHHHHHHHHccCChHHHHHHHhccCC-CCc----------chHHHHHHHHHcCCChHHHH
Q 045069 327 VIHGYVIQHGFEL---SVMVSSALVDMYSKCGYLGLGIQVFETMSE-RNI----------ITYNSVILGLGLHGFTYQAF 392 (554)
Q Consensus 327 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~~~a~ 392 (554)
.++.+|..+--.| +..+...++-.|....+++...++.+.+.. ||. ..|.-.+.---+-|+-++|+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 4455555442223 345556666677777788877777776653 322 12322333333457778888
Q ss_pred HHHHHHHHcC--CCCCHHH-----HHHH--HHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC-hHHH
Q 045069 393 EFFRDIIEKG--LNPDEST-----FSAL--LCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN-LEEA 462 (554)
Q Consensus 393 ~~~~~m~~~g--~~p~~~~-----~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 462 (554)
...-.|++.. +.||... |.-+ -..|...+..+.|.++|++. +.+.|+...=-.+...+...|. ++..
T Consensus 264 ~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 264 NTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhccch
Confidence 8777776632 5565432 2211 12244556667788888777 4466664432223333333332 2222
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 463 YSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.++-. +=..|-..+.+.|..+.-.++|+-+. ...+-.-.+++.+|.+.-+.|.+.
T Consensus 341 ~Elq~---------IgmkLn~LlgrKG~leklq~YWdV~~------------y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 341 LELQQ---------IGMKLNSLLGRKGALEKLQEYWDVAT------------YFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HHHHH---------HHHHHHHHhhccchHHHHHHHHhHHH------------hhhhhhhccCHHHHHHHHHHHhcc
Confidence 22110 01122333457777777777666432 112334456777777777776654
No 463
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.39 E-value=71 Score=24.18 Aligned_cols=51 Identities=10% Similarity=0.056 Sum_probs=40.7
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchh
Q 045069 6 HFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPS 56 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 56 (554)
+..++.++........+.++++.+.+.+...+..|.-..|+.+...|-+..
T Consensus 3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 456677777777888899999999998887888777777899999885443
No 464
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=44.26 E-value=1.2e+02 Score=29.85 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
|..++.-|...++|++|+++.+-
T Consensus 576 y~~iL~e~~sssKWeqavRLCrf 598 (737)
T KOG1524|consen 576 YPEILHEYLSSSKWEQAVRLCRF 598 (737)
T ss_pred cHHHHHHHhccchHHHHHHHHHh
Confidence 33344444444555555554443
No 465
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.06 E-value=3.1e+02 Score=26.33 Aligned_cols=127 Identities=13% Similarity=0.176 Sum_probs=75.2
Q ss_pred CchHHHHHHHHHHHH--ccCChHHHHHHHhccCC----CCcch--------HHHHHHHHHcCCChHHHHHHHHHHHH-cC
Q 045069 338 ELSVMVSSALVDMYS--KCGYLGLGIQVFETMSE----RNIIT--------YNSVILGLGLHGFTYQAFEFFRDIIE-KG 402 (554)
Q Consensus 338 ~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~----~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~m~~-~g 402 (554)
.+....|-.++-.+. ...++.+|..+-+.... .|-.+ |--+-.+|-..|+......++..... ..
T Consensus 121 ~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAt 200 (493)
T KOG2581|consen 121 PAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTAT 200 (493)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhh
Confidence 344556655554433 34777888777665431 22223 22333445567776666666665554 22
Q ss_pred CCCCHH----HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhH-------HHHHHHHHHhcCChHHHHHHHHhC
Q 045069 403 LNPDES----TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEH-------YIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 403 ~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
+.-|.. ..+.+++.|...+.++.|..+..+.. -|+... .-.+.+..+-++++..|.+.|-..
T Consensus 201 Lrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~-----~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa 273 (493)
T KOG2581|consen 201 LRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV-----YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQA 273 (493)
T ss_pred hcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc-----CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHH
Confidence 343433 46778888899999999988887763 232222 123344445578888998888664
No 466
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=43.03 E-value=3.1e+02 Score=26.22 Aligned_cols=198 Identities=15% Similarity=0.084 Sum_probs=114.8
Q ss_pred cCCcchhHHHHHHHH-----HhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHH
Q 045069 319 SANVWPGAVIHGYVI-----QHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 319 ~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
.++.+.|.+-+-... ..+...+..+...++..|...++|+.--+... ....++|+...|..
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~--------------~Lskkrgqlk~ai~ 90 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIR--------------LLSKKRGQLKQAIQ 90 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHH--------------HHHHHhhHHHHHHH
Confidence 555555555443332 22345556667777777887777765433322 12335666666554
Q ss_pred H--HHHHHHcCCCCCHHHHHHHHHHHhc--CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 394 F--FRDIIEKGLNPDESTFSALLCACCH--GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 394 ~--~~~m~~~g~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
. .+-|.-..-.||..|-..++..+-. .|+ +|-+..+ ...-..|.+.+...|+.++|..++.+.
T Consensus 91 ~Mvq~~~~y~~~~~d~~~k~~li~tLr~Vtegk------IyvEvER-------arlTk~L~~ike~~Gdi~~Aa~il~el 157 (439)
T KOG1498|consen 91 SMVQQAMTYIDGTPDLETKIKLIETLRTVTEGK------IYVEVER-------ARLTKMLAKIKEEQGDIAEAADILCEL 157 (439)
T ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHhhcCc------eEEeehH-------HHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 2 1222222234555555444443321 111 1111100 122245667778899999999998887
Q ss_pred CCC--------CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC----chhHHHHHHHHHccCChhHHHHHHHH
Q 045069 470 PKP--------VDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND---PRK----GAYKVMLSNTYAEDGRWDDVMKLRDD 534 (554)
Q Consensus 470 ~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 534 (554)
+.. --.....--++.|...+|+-.|.-+-++..... |+- ..+|..++......+.+=++-+.|+.
T Consensus 158 ~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yra 237 (439)
T KOG1498|consen 158 QVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRA 237 (439)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 521 111222334567888899999988888877662 321 24777888888899999999999999
Q ss_pred HhhcCCccC
Q 045069 535 IVDNGLRKE 543 (554)
Q Consensus 535 ~~~~~~~~~ 543 (554)
+-+.+..+.
T Consensus 238 iy~t~~vk~ 246 (439)
T KOG1498|consen 238 IYDTGNVKE 246 (439)
T ss_pred Hhccccccc
Confidence 887665555
No 467
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.75 E-value=42 Score=22.09 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHH
Q 045069 376 NSVILGLGLHGFTYQAFEFFRDIIE 400 (554)
Q Consensus 376 ~~l~~~~~~~~~~~~a~~~~~~m~~ 400 (554)
-.+|.+|...|++++|.++++++.+
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456777777777777777776654
No 468
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.52 E-value=90 Score=25.82 Aligned_cols=61 Identities=5% Similarity=-0.137 Sum_probs=35.5
Q ss_pred hHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHh
Q 045069 95 LLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLID 156 (554)
Q Consensus 95 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 156 (554)
+.+.|++++..-. .++..+...++.-.|.++++.+.+.+..++..|.-.-+..+...|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3445666554433 344444444556677777777777776666655555566666666543
No 469
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=42.13 E-value=1.6e+02 Score=27.09 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 045069 42 TKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRT 98 (554)
Q Consensus 42 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 98 (554)
-.+++.+.+.++.......+..+. .+..-...++.+...|++..|++++....+.
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 345666666666666666666553 3334455677788889999999988887653
No 470
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=41.91 E-value=3e+02 Score=25.76 Aligned_cols=93 Identities=15% Similarity=0.004 Sum_probs=52.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHh---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCChhhHHH
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEY---GIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLP-------KPVDPAVSGA 480 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~ 480 (554)
.++..|...+++.+|+.+...+...+ .-++. +.++..=-++|....+..+|..-+..+. .||....-.-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 46778888899988887766655431 11111 1122222234555556666655554433 2444433333
Q ss_pred HHHH--HHhcCChHHHHHHHHHHHhc
Q 045069 481 LLSC--CHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 481 l~~~--~~~~~~~~~A~~~~~~~~~~ 504 (554)
|.++ ++...|+..|..+|-++.+-
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEg 238 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEG 238 (411)
T ss_pred HhccceeecccccchHHHHHHHHHcc
Confidence 4333 33447888888888888776
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.68 E-value=95 Score=24.88 Aligned_cols=44 Identities=11% Similarity=-0.017 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhh
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACS 115 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 115 (554)
-..+++.+.+.++.-.|.++++.+.+.+...+..|--..+..+.
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 44455555555555666666666666554444444333333333
No 472
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.64 E-value=69 Score=24.52 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchh
Q 045069 6 HFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPS 56 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 56 (554)
+..++.++.......++.++++.+.+.+...+..|.-.-|+.+.+.|-+..
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 457788888888899999999999999888888876667899999885443
No 473
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.55 E-value=1.3e+02 Score=21.45 Aligned_cols=41 Identities=5% Similarity=0.096 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc
Q 045069 226 GIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL 266 (554)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 266 (554)
++|+.....|+..|+.+|..+++...-+=..+....+++.+
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66777777777777777666666554444444444444443
No 474
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.45 E-value=1.1e+02 Score=27.21 Aligned_cols=23 Identities=13% Similarity=0.071 Sum_probs=13.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHH
Q 045069 513 VMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 513 ~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
..+..++.+.|+.++.+.+.=++
T Consensus 222 ~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 222 WRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH
Confidence 34445666666666666655444
No 475
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.86 E-value=9.1 Score=34.99 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=57.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCeee
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSW 548 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~ 548 (554)
....|.++.|++.+..+++++|....+|..-+.++.+.+++..|++-+...++.+.....+..|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF 187 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence 3467889999999999999999999999999999999999999999999999887776666554
No 476
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=40.58 E-value=66 Score=17.86 Aligned_cols=21 Identities=10% Similarity=0.303 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTF 410 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~ 410 (554)
++.|..+|++.+. +.|+..+|
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 4455555555555 34554444
No 477
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=40.26 E-value=3e+02 Score=25.33 Aligned_cols=43 Identities=7% Similarity=-0.009 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC
Q 045069 125 FVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD 167 (554)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 167 (554)
++++.+.+.++.|.-..+.=+.-.+...=.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555555555555554444445555555556666655543
No 478
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.77 E-value=3.5e+02 Score=26.01 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=10.9
Q ss_pred CCchHHHHHHHHHhHH
Q 045069 420 GGLVNDGREIFTRMTE 435 (554)
Q Consensus 420 ~~~~~~a~~~~~~~~~ 435 (554)
.+++...+++++++..
T Consensus 317 ~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 317 SSKYASCLELLREIKP 332 (466)
T ss_pred hhhHHHHHHHHHHhcc
Confidence 3567777777777765
No 479
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=39.74 E-value=3.2e+02 Score=25.53 Aligned_cols=65 Identities=11% Similarity=-0.031 Sum_probs=35.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc---cCChhHHHHHHHHHh
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE---DGRWDDVMKLRDDIV 536 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~ 536 (554)
+.+...+..++..+.+..+.+...+-+++++..+|.++..+...+..... .-.+++...+|.+.+
T Consensus 62 p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 62 PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 33444555555555555566666666666666666666666555444332 223445555555544
No 480
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.73 E-value=3.5e+02 Score=26.02 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhc--cCCcchhHHHHHHHHHh
Q 045069 279 TGYSQQGDYGKALYYFRKLNMQGKKADPV--LIASVLAAAAK--SANVWPGAVIHGYVIQH 335 (554)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~--~g~~~~a~~~~~~~~~~ 335 (554)
..+.+.+++..|.++++.+... ++++.. .+..+..+|.. .-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455788999999999998876 555444 44555555553 45567777777776654
No 481
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.57 E-value=4.2e+02 Score=28.51 Aligned_cols=177 Identities=12% Similarity=0.066 Sum_probs=109.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHH
Q 045069 284 QGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQV 363 (554)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 363 (554)
+.++++.+.+.+...--| ..+|.-+.+.|-.+-|+.+.+.-. + -...+..+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHHH
Confidence 456666666554432222 134444556666666665543221 1 12235567899998887
Q ss_pred HhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh
Q 045069 364 FETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT 443 (554)
Q Consensus 364 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 443 (554)
-..+. +..+|..|.......|+.+-|...|++... |..|--.|.-.|+.++..++.+....+ .|.
T Consensus 666 akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r----~D~ 730 (1202)
T KOG0292|consen 666 AKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR----NDA 730 (1202)
T ss_pred HHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh----hhh
Confidence 66554 556899999999999999999999987654 333334566788888877766665442 232
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
... ...-.-.|+.++-.+++......|- .| .....+|.-++|.++.++.-..
T Consensus 731 ~~~---~qnalYl~dv~ervkIl~n~g~~~l--ay----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 731 TGQ---FQNALYLGDVKERVKILENGGQLPL--AY----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHH---HHHHHHhccHHHHHHHHHhcCcccH--HH----HHHhhcCcHHHHHHHHHhhccc
Confidence 211 1111236888888888877653221 11 1234678888999998888774
No 482
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=39.31 E-value=2.5e+02 Score=24.52 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=8.5
Q ss_pred HHHHcCCChHHHHHHHHHH
Q 045069 380 LGLGLHGFTYQAFEFFRDI 398 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m 398 (554)
......|+.+.|++....+
T Consensus 72 r~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHhccHHHHHHHHHHh
Confidence 3344444444444444443
No 483
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=39.07 E-value=2.7e+02 Score=24.49 Aligned_cols=136 Identities=13% Similarity=0.145 Sum_probs=60.9
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCch
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLV 423 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 423 (554)
...-+..|.+.-++.-|....+++.+|=.. ...+--|.+..+.+--.++.+-....+++-+......++ +...||.
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 344455566666665555555555443211 112223334443333333333333344444444444333 3355666
Q ss_pred HHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 424 NDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 424 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
.+|+.-++.....+|..... .+|+ ....|.+.....++..|. .+++++|.+++.++.+
T Consensus 209 RQalNnLQst~~g~g~Vn~e--------------------nVfK-v~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~ 266 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQE--------------------NVFK-VCDEPHPLLVKKMLQACL-KRNIDEALKILAELWK 266 (333)
T ss_pred HHHHHHHHHHhccccccchh--------------------hhhh-ccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence 66665555544422211100 0000 012455555555554443 3566666666666666
Q ss_pred cC
Q 045069 504 ND 505 (554)
Q Consensus 504 ~~ 505 (554)
..
T Consensus 267 lg 268 (333)
T KOG0991|consen 267 LG 268 (333)
T ss_pred cC
Confidence 64
No 484
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.74 E-value=83 Score=22.32 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHH
Q 045069 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDA 88 (554)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 88 (554)
..++..+.+.|+- +....-.+.....+.+.|.++++.++..+..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4567777766642 2222222334455678888888888888888888888888777654433
No 485
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=38.42 E-value=1.9e+02 Score=22.52 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHH---HHHHhhc-------CCChhhHHHHHHHHHHhcCCCCHhH
Q 045069 72 WNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYAC---ITRACSE-------NSDLPGLRFVHGGAIVSGLGRDSIT 141 (554)
Q Consensus 72 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~ 141 (554)
+...++.+....-.-.+.++..++....-.|....... -+..|-. .+...-.-.++..+.+.++......
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 55556666666666666666666666543333332111 1222221 1122223344555666665544555
Q ss_pred HHHHHHHHHcCCCHhHHHHhhccc
Q 045069 142 SSALVTAYSKLSLIDEAIKVFDGV 165 (554)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~~ 165 (554)
+..+-.-|.+..+..+|-.+|+-+
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHH
Confidence 555555666666677777776544
No 486
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=37.64 E-value=46 Score=22.20 Aligned_cols=50 Identities=18% Similarity=0.070 Sum_probs=29.3
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhc
Q 045069 66 QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSE 116 (554)
Q Consensus 66 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 116 (554)
.|....++.++..+++..-.++++..+.++.+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34555667777777777667777777777777654 344455444444443
No 487
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.62 E-value=2.7e+02 Score=24.12 Aligned_cols=60 Identities=15% Similarity=0.031 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCch-------HHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 410 FSALLCACCHGGLV-------NDGREIFTRMTEEYGIQAK-----TEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 410 ~~~ll~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
+..+.+.|...|+- ..|.+.|.+..+. .-.|. ..+.-.++....+.|+.++|.++|.++.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~-e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN-EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh-CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455556666663 3455555555443 21211 2233344555566677777777776654
No 488
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.44 E-value=3.3e+02 Score=25.05 Aligned_cols=41 Identities=7% Similarity=0.070 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc
Q 045069 226 GIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL 266 (554)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 266 (554)
++|+.+...++.|.-..+.-+.-.+.+.=.+...+.+++.+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl 304 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSL 304 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHH
Confidence 34444444444444444444444444444444555555444
No 489
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=37.09 E-value=3.8e+02 Score=25.63 Aligned_cols=56 Identities=9% Similarity=-0.003 Sum_probs=32.0
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKT-----EHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
+.|.-.+|+-+|.-+-+++..++--.|+. .-|+.+++.....+.+=++-+.++.+-
T Consensus 179 rKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy 239 (439)
T KOG1498|consen 179 RLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIY 239 (439)
T ss_pred HHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 34555666666666666665553334442 335566666666666666666666543
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.89 E-value=2.4e+02 Score=23.29 Aligned_cols=60 Identities=8% Similarity=0.066 Sum_probs=38.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCCh
Q 045069 297 LNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYL 357 (554)
Q Consensus 297 m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (554)
+...|++++..-. .++..+...++.-.|.++++.+.+.+..++..|...-++.+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4456777666544 34444444566677888888888887777766665566666666643
No 491
>PRK09857 putative transposase; Provisional
Probab=36.81 E-value=1.7e+02 Score=26.81 Aligned_cols=62 Identities=10% Similarity=0.206 Sum_probs=42.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
++......++.++-.++++...+..|........+++-+.+.|.-++++++.++|...|+..
T Consensus 212 ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 212 LFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33333455666666666666666666666666677777777787788888888888877653
No 492
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.00 E-value=84 Score=28.64 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHH-HHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 045069 403 LNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIY-MVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSG 479 (554)
Q Consensus 403 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 479 (554)
+.-|+..|...+..-.+.+.+.+...++.+..++ .|.++..|-. -..-|...++.+.+..+|.... .+.++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK--HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 3345555666665555667777778888887773 4445555433 2233556677888888777643 245566665
Q ss_pred HHHH
Q 045069 480 ALLS 483 (554)
Q Consensus 480 ~l~~ 483 (554)
...+
T Consensus 181 eyfr 184 (435)
T COG5191 181 EYFR 184 (435)
T ss_pred HHHH
Confidence 5443
No 493
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.89 E-value=2.7e+02 Score=28.66 Aligned_cols=100 Identities=12% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChhhHHHHHhhc------CCCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 045069 245 VLVSMYARCNCMNSAYHVFNSL------FHPDLVTWSALITGYSQQGDYG------KALYYFRKLNMQGKKADPVLIASV 312 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~m~~~~~~~~~~~~~~l 312 (554)
+|..+|...|++-.+..+++.. .+.-...+|..|+.+.+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Q ss_pred HHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHH
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSAL 347 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 347 (554)
+.+.....+-....-++.++.......-...+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~s~ngv~di~~~~ 144 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHRSANGVIDILMHE 144 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHhhhhhHHHHHhhh
No 494
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.58 E-value=1.2e+02 Score=29.52 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCeeeeecC
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWVSGS 552 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~~~ 552 (554)
..++-.+.++.+.+.... .....-++.|.+.+++++|..-+++-++.|...--|...|.+|
T Consensus 69 ~~~e~i~lL~~l~~~g~a--d~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhG 129 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGGA--DFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHG 129 (480)
T ss_pred cHHHHHHHHHHHHHccCC--CccceeeecccccccHHHHHHHHHhhhhcCcccccCCCccccc
Confidence 455556666665555322 2344456788889999999998888888776666666666654
No 495
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.22 E-value=80 Score=23.90 Aligned_cols=41 Identities=10% Similarity=-0.094 Sum_probs=19.8
Q ss_pred hhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC
Q 045069 114 CSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (554)
+...+..-.|.++++.+.+.+..++..|.-..++.+...|-
T Consensus 10 l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 10 LLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33334444555555555555544444444444455555544
No 496
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=35.20 E-value=3.6e+02 Score=24.79 Aligned_cols=20 Identities=10% Similarity=0.215 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHcCCChHHH
Q 045069 372 IITYNSVILGLGLHGFTYQA 391 (554)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~~a 391 (554)
..+|.-|+.+++..|+.+..
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34677778888888776654
No 497
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=35.19 E-value=4.4e+02 Score=25.75 Aligned_cols=101 Identities=14% Similarity=0.005 Sum_probs=51.5
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL 154 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 154 (554)
.|+++...| ..++..+-...... ++...+.....++....+......+.+.+. .++..+......++...+.
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCc
Confidence 366666667 45666666555432 223333333333332222222333333332 3455566677777777766
Q ss_pred HhHHHHhhcccCCCCcchHHHHHHHHHhC
Q 045069 155 IDEAIKVFDGVSDPDLVLCNSMISGFAHC 183 (554)
Q Consensus 155 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 183 (554)
.+....+..-+..++.......+.++...
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r 144 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAH 144 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhh
Confidence 66655555555555555555555555543
No 498
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.19 E-value=1.7e+02 Score=21.10 Aligned_cols=53 Identities=8% Similarity=-0.003 Sum_probs=26.3
Q ss_pred HcCCChHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 383 GLHGFTYQAFEFFRDIIE----KGLNPD----ESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~~----~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
.+.|++..|.+.+.+..+ .+..+. ..+...+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666666554444433 222221 11222334445566777777777766655
No 499
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=34.48 E-value=1.6e+02 Score=21.03 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC
Q 045069 20 SRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP 65 (554)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 65 (554)
++-.++++.....|+.-|+..|..++..+.-.-.++...++++.+.
T Consensus 25 ~eE~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 25 AEEVELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3446888888888999999999998888887778888888777665
No 500
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=34.34 E-value=2e+02 Score=21.70 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 494 AEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
+.+.+.+.....|+.+.....+++-+...-.|+++..-.++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRG 104 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 455666666666766666666665555555555555555444
Done!