Query 045069
Match_columns 554
No_of_seqs 648 out of 2892
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 16:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2E-43 6.8E-48 360.9 35.3 484 47-541 62-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.5E-41 8.4E-46 345.4 29.1 479 35-520 81-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.1E-27 1.1E-31 227.3 39.9 371 76-524 6-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 1.9E-29 6.7E-34 246.2 19.6 215 86-353 7-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.9E-26 9.8E-31 220.6 38.4 355 177-540 6-370 (388)
6 4g26_A Pentatricopeptide repea 100.0 1.5E-28 5.2E-33 239.9 21.3 184 272-456 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 7.8E-25 2.7E-29 219.1 34.3 428 71-515 8-489 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.3E-25 1.8E-29 220.3 29.9 429 105-541 7-481 (514)
9 3fp2_A TPR repeat-containing p 99.9 5.8E-23 2E-27 206.7 35.1 352 69-435 25-406 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 5E-22 1.7E-26 195.1 33.4 345 169-544 25-416 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.1E-21 3.7E-26 192.7 33.5 367 136-529 23-445 (450)
12 3fp2_A TPR repeat-containing p 99.9 2.3E-21 7.8E-26 195.0 32.4 421 37-469 24-488 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 2.9E-19 1E-23 169.5 32.5 304 207-539 5-336 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 9.1E-19 3.1E-23 166.1 30.9 324 169-522 2-353 (359)
15 3hym_B Cell division cycle pro 99.8 1E-18 3.5E-23 163.7 29.4 287 237-526 19-322 (330)
16 3hym_B Cell division cycle pro 99.8 1E-18 3.6E-23 163.7 26.3 267 269-540 20-301 (330)
17 2xm6_A Protein corresponding t 99.8 2.2E-17 7.6E-22 163.4 35.8 351 152-521 56-452 (490)
18 1fch_A Peroxisomal targeting s 99.8 6.9E-19 2.4E-23 167.7 23.0 282 250-537 35-358 (368)
19 1b89_A Protein (clathrin heavy 99.8 8.4E-18 2.9E-22 156.3 28.2 345 49-469 14-369 (449)
20 2ooe_A Cleavage stimulation fa 99.8 1.8E-16 6E-21 158.6 38.7 423 92-540 2-494 (530)
21 1b89_A Protein (clathrin heavy 99.8 8.8E-19 3E-23 162.8 19.7 374 116-533 15-412 (449)
22 1xi4_A Clathrin heavy chain; a 99.8 1.9E-15 6.4E-20 156.8 45.4 449 24-534 860-1341(1630)
23 1xi4_A Clathrin heavy chain; a 99.8 4.8E-15 1.6E-19 153.8 47.8 441 35-525 982-1477(1630)
24 2xm6_A Protein corresponding t 99.8 3.2E-16 1.1E-20 155.1 37.9 352 168-540 37-434 (490)
25 4eqf_A PEX5-related protein; a 99.8 2.5E-18 8.7E-23 163.6 19.7 262 270-535 64-353 (365)
26 3mkr_A Coatomer subunit epsilo 99.8 8.6E-17 2.9E-21 146.7 26.9 270 248-531 7-287 (291)
27 3cv0_A Peroxisome targeting si 99.8 1.6E-17 5.6E-22 155.3 21.8 261 272-537 22-314 (327)
28 2ooe_A Cleavage stimulation fa 99.8 6.3E-16 2.2E-20 154.6 33.8 407 67-507 11-495 (530)
29 4g1t_A Interferon-induced prot 99.8 1.3E-16 4.3E-21 157.6 27.8 385 138-549 50-470 (472)
30 1fch_A Peroxisomal targeting s 99.8 6E-17 2E-21 154.2 22.5 261 69-365 64-354 (368)
31 3mkr_A Coatomer subunit epsilo 99.8 5.9E-17 2E-21 147.8 20.9 248 278-540 6-266 (291)
32 4eqf_A PEX5-related protein; a 99.7 6.6E-17 2.3E-21 153.8 20.0 233 305-540 64-312 (365)
33 4g1t_A Interferon-induced prot 99.7 5.8E-15 2E-19 145.6 29.3 299 184-516 152-471 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.6E-18 1.6E-22 170.6 5.7 147 38-184 127-286 (1134)
35 3uq3_A Heat shock protein STI1 99.7 1E-15 3.5E-20 137.6 19.2 227 271-539 5-237 (258)
36 3cv0_A Peroxisome targeting si 99.7 7.9E-15 2.7E-19 136.9 25.6 275 68-368 20-313 (327)
37 3spa_A Mtrpol, DNA-directed RN 99.7 5.2E-17 1.8E-21 163.1 10.7 150 237-386 124-286 (1134)
38 2pl2_A Hypothetical conserved 99.7 7.3E-16 2.5E-20 134.3 16.1 195 338-537 2-213 (217)
39 3e4b_A ALGK; tetratricopeptide 99.7 1E-14 3.5E-19 142.0 25.8 375 113-538 12-421 (452)
40 3uq3_A Heat shock protein STI1 99.7 2E-15 6.7E-20 135.8 19.0 234 240-518 5-256 (258)
41 1xnf_A Lipoprotein NLPI; TPR, 99.7 6.3E-15 2.2E-19 133.9 19.7 242 282-532 16-269 (275)
42 1ouv_A Conserved hypothetical 99.6 1.2E-13 4.1E-18 125.2 24.5 225 270-540 5-253 (273)
43 2ho1_A Type 4 fimbrial biogene 99.6 9.7E-14 3.3E-18 124.2 21.3 198 341-540 37-240 (252)
44 2q7f_A YRRB protein; TPR, prot 99.6 2.1E-14 7.2E-19 127.7 16.8 198 340-540 22-224 (243)
45 3e4b_A ALGK; tetratricopeptide 99.6 1.1E-13 3.7E-18 134.7 22.8 271 255-540 89-389 (452)
46 3u4t_A TPR repeat-containing p 99.6 5.7E-13 1.9E-17 120.7 26.2 251 244-523 7-269 (272)
47 2ho1_A Type 4 fimbrial biogene 99.6 2.5E-13 8.6E-18 121.5 23.2 203 310-515 41-249 (252)
48 2vq2_A PILW, putative fimbrial 99.6 1.7E-13 5.9E-18 120.1 21.4 199 339-539 6-212 (225)
49 3vtx_A MAMA; tetratricopeptide 99.6 6E-14 2.1E-18 118.8 17.4 167 371-541 4-173 (184)
50 2q7f_A YRRB protein; TPR, prot 99.6 4E-14 1.4E-18 125.9 16.9 205 314-522 31-240 (243)
51 3u4t_A TPR repeat-containing p 99.6 8.5E-14 2.9E-18 126.2 19.3 222 317-542 14-254 (272)
52 1ouv_A Conserved hypothetical 99.6 6.2E-13 2.1E-17 120.5 24.5 232 239-510 5-257 (273)
53 2vq2_A PILW, putative fimbrial 99.6 4.9E-13 1.7E-17 117.2 21.8 208 270-515 7-222 (225)
54 2h6f_A Protein farnesyltransfe 99.6 1.6E-13 5.6E-18 129.2 19.1 244 272-521 98-365 (382)
55 4a1s_A PINS, partner of inscut 99.6 4.3E-14 1.5E-18 136.6 15.6 262 276-538 53-372 (411)
56 2h6f_A Protein farnesyltransfe 99.6 7.8E-14 2.7E-18 131.4 16.6 228 307-540 98-350 (382)
57 3sf4_A G-protein-signaling mod 99.6 1.1E-13 3.7E-18 133.5 18.2 289 239-527 8-365 (406)
58 2pl2_A Hypothetical conserved 99.6 2.4E-13 8.3E-18 118.2 18.4 193 270-468 4-210 (217)
59 3ro2_A PINS homolog, G-protein 99.5 1.6E-13 5.4E-18 128.5 16.5 263 277-539 11-333 (338)
60 4abn_A Tetratricopeptide repea 99.5 1.6E-13 5.6E-18 134.4 15.2 193 339-535 100-318 (474)
61 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.6E-13 8.8E-18 123.1 15.6 219 317-540 16-246 (275)
62 3sf4_A G-protein-signaling mod 99.5 2.2E-13 7.5E-18 131.3 14.5 267 203-469 7-333 (406)
63 3ulq_A Response regulator aspa 99.5 5.4E-13 1.9E-17 127.4 16.6 224 314-538 111-368 (383)
64 4e6h_A MRNA 3'-END-processing 99.5 8E-10 2.7E-14 111.2 38.3 414 67-511 64-577 (679)
65 3nf1_A KLC 1, kinesin light ch 99.5 4.3E-13 1.5E-17 124.1 12.7 243 271-538 27-307 (311)
66 4a1s_A PINS, partner of inscut 99.5 9.4E-13 3.2E-17 127.2 15.6 262 245-506 53-374 (411)
67 3as5_A MAMA; tetratricopeptide 99.4 1.8E-12 6.1E-17 109.7 14.9 162 378-542 14-177 (186)
68 3vtx_A MAMA; tetratricopeptide 99.4 3.6E-12 1.2E-16 107.8 16.7 168 340-510 4-176 (184)
69 4gyw_A UDP-N-acetylglucosamine 99.4 1.6E-12 5.6E-17 132.3 17.0 163 372-538 9-174 (723)
70 2ond_A Cleavage stimulation fa 99.4 1E-11 3.4E-16 114.5 19.7 219 288-510 33-276 (308)
71 4e6h_A MRNA 3'-END-processing 99.4 4.5E-10 1.5E-14 113.0 31.8 438 83-542 46-574 (679)
72 3ulq_A Response regulator aspa 99.4 1.2E-11 4.2E-16 118.0 19.3 228 277-504 109-368 (383)
73 3ro2_A PINS homolog, G-protein 99.4 3.1E-12 1.1E-16 119.6 14.8 261 247-507 12-335 (338)
74 4i17_A Hypothetical protein; T 99.4 1.3E-11 4.6E-16 108.3 16.9 191 340-541 6-212 (228)
75 2ond_A Cleavage stimulation fa 99.4 9.1E-11 3.1E-15 108.1 23.1 178 358-539 81-271 (308)
76 3q15_A PSP28, response regulat 99.4 8.6E-12 2.9E-16 118.8 16.3 222 315-537 110-364 (378)
77 1hz4_A MALT regulatory protein 99.4 3.1E-10 1.1E-14 107.9 27.1 194 344-537 96-321 (373)
78 4abn_A Tetratricopeptide repea 99.3 9.9E-12 3.4E-16 121.7 14.8 179 357-540 84-289 (474)
79 4i17_A Hypothetical protein; T 99.3 6.5E-11 2.2E-15 103.9 18.3 205 304-520 5-225 (228)
80 3as5_A MAMA; tetratricopeptide 99.3 1E-10 3.5E-15 98.7 17.9 168 341-511 8-180 (186)
81 3edt_B KLC 2, kinesin light ch 99.3 9.3E-11 3.2E-15 106.5 15.1 130 409-538 129-281 (283)
82 3nf1_A KLC 1, kinesin light ch 99.3 2.3E-11 7.9E-16 112.3 11.1 238 239-507 26-310 (311)
83 3q15_A PSP28, response regulat 99.2 1E-09 3.4E-14 104.4 22.5 226 279-504 109-365 (378)
84 2yhc_A BAMD, UPF0169 lipoprote 99.2 7.2E-10 2.5E-14 96.8 17.4 184 342-544 5-219 (225)
85 3mv2_B Coatomer subunit epsilo 99.2 3.6E-09 1.2E-13 94.4 21.8 244 248-513 21-291 (310)
86 3mv2_B Coatomer subunit epsilo 99.2 1.9E-09 6.6E-14 96.1 19.6 241 278-540 20-284 (310)
87 3qky_A Outer membrane assembly 99.2 6.2E-10 2.1E-14 99.8 16.1 184 340-540 14-226 (261)
88 2fo7_A Synthetic consensus TPR 99.2 5.9E-10 2E-14 88.3 14.3 128 410-539 4-133 (136)
89 4ga2_A E3 SUMO-protein ligase 99.2 6.1E-11 2.1E-15 96.0 8.3 142 379-524 4-149 (150)
90 4gyw_A UDP-N-acetylglucosamine 99.2 1.7E-10 5.8E-15 117.5 13.3 163 339-505 7-175 (723)
91 1hz4_A MALT regulatory protein 99.2 1.2E-08 4.2E-13 96.7 25.3 60 410-469 256-319 (373)
92 1qqe_A Vesicular transport pro 99.1 5.2E-10 1.8E-14 102.1 13.8 191 348-538 44-269 (292)
93 3qky_A Outer membrane assembly 99.1 8.7E-10 3E-14 98.9 14.4 205 303-528 12-251 (261)
94 1qqe_A Vesicular transport pro 99.1 1.5E-09 5.1E-14 99.0 15.8 172 342-516 78-281 (292)
95 3rjv_A Putative SEL1 repeat pr 99.1 7.8E-09 2.7E-13 89.1 18.5 162 370-540 16-199 (212)
96 3qou_A Protein YBBN; thioredox 99.1 2.7E-09 9.2E-14 96.9 15.5 172 361-537 106-283 (287)
97 4ga2_A E3 SUMO-protein ligase 99.1 2.5E-10 8.6E-15 92.4 7.0 126 413-541 3-132 (150)
98 3edt_B KLC 2, kinesin light ch 99.1 4.8E-09 1.7E-13 95.0 16.3 203 271-504 43-281 (283)
99 2pzi_A Probable serine/threoni 99.0 6.5E-10 2.2E-14 113.9 11.6 168 352-524 402-583 (681)
100 2vsy_A XCC0866; transferase, g 99.0 2.8E-09 9.7E-14 107.3 15.7 159 354-516 2-169 (568)
101 2fo7_A Synthetic consensus TPR 99.0 6.9E-09 2.4E-13 82.0 14.8 131 374-507 3-135 (136)
102 2r5s_A Uncharacterized protein 99.0 2.3E-09 7.9E-14 89.5 12.1 158 375-537 9-172 (176)
103 3gyz_A Chaperone protein IPGC; 99.0 1.2E-09 4E-14 87.9 9.2 98 443-540 36-135 (151)
104 2pzi_A Probable serine/threoni 99.0 2.2E-09 7.6E-14 109.9 12.1 153 383-540 402-565 (681)
105 4gco_A Protein STI-1; structur 99.0 4.4E-09 1.5E-13 82.0 10.6 107 409-517 15-123 (126)
106 4gco_A Protein STI-1; structur 99.0 6.6E-09 2.3E-13 81.0 11.3 103 439-541 8-113 (126)
107 3urz_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 87.7 13.9 161 344-508 7-190 (208)
108 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.9E-08 1E-12 85.7 15.7 129 374-508 8-154 (213)
109 3u3w_A Transcriptional activat 98.9 6.7E-08 2.3E-12 88.1 18.5 159 378-537 81-265 (293)
110 2vgx_A Chaperone SYCD; alterna 98.9 2.3E-09 7.9E-14 86.3 7.6 96 443-538 21-118 (148)
111 2uy1_A Cleavage stimulation fa 98.9 1.2E-06 4.1E-11 85.6 28.1 367 82-504 7-413 (493)
112 2ifu_A Gamma-SNAP; membrane fu 98.9 1E-08 3.5E-13 94.1 12.7 218 284-530 4-253 (307)
113 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.6E-08 1.2E-12 85.9 15.3 185 305-510 3-219 (225)
114 3urz_A Uncharacterized protein 98.9 1.1E-08 3.7E-13 87.9 11.5 160 377-541 9-189 (208)
115 3qou_A Protein YBBN; thioredox 98.9 2.5E-08 8.5E-13 90.5 14.4 136 405-542 115-252 (287)
116 3dra_A Protein farnesyltransfe 98.9 4.4E-07 1.5E-11 81.9 22.2 192 343-537 69-286 (306)
117 2vsy_A XCC0866; transferase, g 98.9 4.7E-08 1.6E-12 98.4 17.6 151 386-540 3-159 (568)
118 2ifu_A Gamma-SNAP; membrane fu 98.9 1.9E-08 6.5E-13 92.4 13.3 220 253-496 4-253 (307)
119 2e2e_A Formate-dependent nitri 98.9 9.1E-09 3.1E-13 85.9 9.7 125 383-510 21-150 (177)
120 1a17_A Serine/threonine protei 98.9 4.2E-08 1.4E-12 80.7 13.3 127 409-537 15-145 (166)
121 2qfc_A PLCR protein; TPR, HTH, 98.8 4.6E-08 1.6E-12 89.2 14.4 163 375-537 78-265 (293)
122 2r5s_A Uncharacterized protein 98.8 1.7E-08 5.8E-13 84.2 10.1 132 410-543 9-142 (176)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.3E-07 4.4E-12 81.6 15.1 126 342-470 7-148 (213)
124 2lni_A Stress-induced-phosphop 98.8 7.2E-08 2.5E-12 75.8 12.3 115 408-524 17-133 (133)
125 3rjv_A Putative SEL1 repeat pr 98.8 4.5E-07 1.6E-11 78.0 18.2 173 324-506 4-199 (212)
126 2vyi_A SGTA protein; chaperone 98.8 7.8E-08 2.7E-12 75.3 12.2 117 408-526 13-131 (131)
127 1na0_A Designed protein CTPR3; 98.8 1.3E-07 4.4E-12 73.3 12.9 114 408-523 10-125 (125)
128 2xcb_A PCRH, regulatory protei 98.8 5.6E-08 1.9E-12 77.6 11.0 93 446-538 21-115 (142)
129 2kck_A TPR repeat; tetratricop 98.8 6E-08 2.1E-12 73.6 10.7 102 442-543 5-111 (112)
130 2c2l_A CHIP, carboxy terminus 98.8 1.2E-08 4E-13 92.3 7.6 188 341-538 4-199 (281)
131 3upv_A Heat shock protein STI1 98.8 6E-08 2E-12 75.6 10.4 95 445-539 6-102 (126)
132 3dra_A Protein farnesyltransfe 98.7 6.2E-06 2.1E-10 74.4 24.7 224 288-517 50-301 (306)
133 3gyz_A Chaperone protein IPGC; 98.7 1.2E-07 4E-12 76.2 12.1 105 403-509 31-138 (151)
134 2vgx_A Chaperone SYCD; alterna 98.7 2.6E-08 9E-13 80.1 8.0 118 394-515 9-129 (148)
135 1hxi_A PEX5, peroxisome target 98.7 4.2E-08 1.4E-12 75.7 8.9 96 445-540 19-116 (121)
136 1p5q_A FKBP52, FK506-binding p 98.7 9.2E-08 3.1E-12 88.8 12.5 94 443-536 196-292 (336)
137 3sz7_A HSC70 cochaperone (SGT) 98.7 9.1E-08 3.1E-12 78.6 10.1 108 407-516 11-120 (164)
138 4f3v_A ESX-1 secretion system 98.7 1.5E-07 5E-12 82.9 11.5 133 378-515 108-247 (282)
139 2uy1_A Cleavage stimulation fa 98.7 1.2E-05 4.1E-10 78.5 26.3 81 52-132 28-117 (493)
140 3q49_B STIP1 homology and U bo 98.7 2.2E-07 7.5E-12 73.6 11.6 98 442-539 8-107 (137)
141 3u3w_A Transcriptional activat 98.7 2E-06 7E-11 78.2 19.2 159 346-504 80-266 (293)
142 4gcn_A Protein STI-1; structur 98.7 8.2E-08 2.8E-12 74.8 8.5 94 445-538 10-112 (127)
143 2lni_A Stress-induced-phosphop 98.6 1.8E-07 6.3E-12 73.4 10.4 102 440-541 13-116 (133)
144 4f3v_A ESX-1 secretion system 98.6 3.1E-07 1.1E-11 80.8 12.5 127 411-540 106-239 (282)
145 1elw_A TPR1-domain of HOP; HOP 98.6 3.1E-07 1.1E-11 70.3 11.3 106 409-516 6-113 (118)
146 2fbn_A 70 kDa peptidylprolyl i 98.6 2.9E-07 9.8E-12 78.3 11.9 95 444-538 89-186 (198)
147 1elw_A TPR1-domain of HOP; HOP 98.6 6.2E-07 2.1E-11 68.5 12.7 98 443-540 4-103 (118)
148 2e2e_A Formate-dependent nitri 98.6 2.3E-07 7.8E-12 77.3 10.6 124 417-542 20-148 (177)
149 3gw4_A Uncharacterized protein 98.6 5.4E-07 1.8E-11 76.8 12.7 153 384-537 4-175 (203)
150 2xcb_A PCRH, regulatory protei 98.6 2.9E-07 1E-11 73.4 10.1 106 409-516 20-127 (142)
151 1na0_A Designed protein CTPR3; 98.6 5.3E-07 1.8E-11 69.7 11.4 98 443-540 9-108 (125)
152 3upv_A Heat shock protein STI1 98.6 5.3E-07 1.8E-11 70.1 11.3 110 409-520 6-123 (126)
153 2qfc_A PLCR protein; TPR, HTH, 98.6 2.6E-06 8.9E-11 77.5 17.2 164 341-504 75-266 (293)
154 2vyi_A SGTA protein; chaperone 98.5 4.4E-07 1.5E-11 70.9 9.8 99 442-540 11-111 (131)
155 2dba_A Smooth muscle cell asso 98.5 9E-07 3.1E-11 70.9 11.4 111 406-519 27-143 (148)
156 2dba_A Smooth muscle cell asso 98.5 2.3E-06 7.8E-11 68.5 13.6 99 442-540 27-130 (148)
157 3sz7_A HSC70 cochaperone (SGT) 98.5 1.1E-06 3.7E-11 72.1 11.8 92 374-469 13-105 (164)
158 2xev_A YBGF; tetratricopeptide 98.5 1.1E-06 3.9E-11 68.5 10.9 101 413-515 8-116 (129)
159 3q49_B STIP1 homology and U bo 98.5 1E-06 3.5E-11 69.6 10.5 112 406-519 8-126 (137)
160 1a17_A Serine/threonine protei 98.5 3.4E-06 1.2E-10 69.0 14.1 128 374-504 15-146 (166)
161 2hr2_A Hypothetical protein; a 98.4 1.3E-06 4.3E-11 69.3 9.7 64 476-539 58-132 (159)
162 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.2E-06 7.6E-11 83.2 13.6 94 443-536 317-413 (457)
163 3q7a_A Farnesyltransferase alp 98.4 1.9E-05 6.5E-10 72.0 18.7 31 506-536 299-329 (349)
164 3rkv_A Putative peptidylprolyl 98.4 9.4E-07 3.2E-11 72.3 9.1 102 408-509 12-131 (162)
165 1elr_A TPR2A-domain of HOP; HO 98.4 1E-06 3.5E-11 68.8 8.8 110 408-520 5-123 (131)
166 3q7a_A Farnesyltransferase alp 98.4 0.00016 5.3E-09 66.0 24.0 232 282-518 65-346 (349)
167 3dss_A Geranylgeranyl transfer 98.4 3.8E-05 1.3E-09 69.7 19.9 180 357-539 90-305 (331)
168 1wao_1 Serine/threonine protei 98.4 6.5E-07 2.2E-11 87.3 9.0 118 415-534 14-135 (477)
169 3k9i_A BH0479 protein; putativ 98.4 2.2E-07 7.7E-12 71.2 4.6 91 420-511 3-97 (117)
170 2if4_A ATFKBP42; FKBP-like, al 98.4 7.8E-07 2.7E-11 82.6 8.9 151 373-543 180-333 (338)
171 4b4t_Q 26S proteasome regulato 98.4 6.8E-06 2.3E-10 79.5 16.0 163 375-537 58-244 (434)
172 2fbn_A 70 kDa peptidylprolyl i 98.4 2.4E-07 8.1E-12 78.8 4.8 98 443-540 38-153 (198)
173 3gw4_A Uncharacterized protein 98.4 2.3E-06 7.9E-11 72.9 10.9 61 375-435 110-175 (203)
174 2c2l_A CHIP, carboxy terminus 98.4 2.4E-06 8.3E-11 77.0 11.5 104 406-511 3-108 (281)
175 2xev_A YBGF; tetratricopeptide 98.4 7.1E-06 2.4E-10 63.8 12.7 93 447-539 6-106 (129)
176 1elr_A TPR2A-domain of HOP; HO 98.4 1.9E-06 6.6E-11 67.1 9.3 94 445-538 6-108 (131)
177 1hxi_A PEX5, peroxisome target 98.3 1.9E-06 6.7E-11 66.2 8.9 96 412-509 22-119 (121)
178 1p5q_A FKBP52, FK506-binding p 98.3 4.2E-06 1.4E-10 77.6 12.4 94 408-503 197-293 (336)
179 2kck_A TPR repeat; tetratricop 98.3 2.8E-06 9.7E-11 64.0 9.1 98 410-509 9-111 (112)
180 1ihg_A Cyclophilin 40; ppiase 98.3 2.7E-06 9.1E-11 79.9 10.4 90 442-531 272-363 (370)
181 3rkv_A Putative peptidylprolyl 98.3 2.1E-06 7E-11 70.2 8.4 94 447-540 15-128 (162)
182 3ro3_A PINS homolog, G-protein 98.3 2.5E-06 8.6E-11 69.4 9.0 94 445-538 51-158 (164)
183 3ma5_A Tetratricopeptide repea 98.3 3.9E-06 1.3E-10 61.9 8.6 67 472-538 4-70 (100)
184 4gcn_A Protein STI-1; structur 98.2 6.7E-06 2.3E-10 63.8 9.9 96 410-507 11-115 (127)
185 3k9i_A BH0479 protein; putativ 98.2 1E-06 3.6E-11 67.4 5.0 84 456-539 3-91 (117)
186 2l6j_A TPR repeat-containing p 98.2 6.1E-07 2.1E-11 67.9 3.5 94 442-535 3-104 (111)
187 2if4_A ATFKBP42; FKBP-like, al 98.2 5.4E-06 1.8E-10 76.9 9.9 150 341-509 179-333 (338)
188 1dce_A Protein (RAB geranylger 98.2 5.6E-05 1.9E-09 75.0 17.6 169 355-527 43-244 (567)
189 4b4t_Q 26S proteasome regulato 98.2 2.5E-05 8.4E-10 75.5 14.2 158 380-537 12-203 (434)
190 3n71_A Histone lysine methyltr 98.1 2.4E-06 8.3E-11 82.7 6.6 128 417-544 319-470 (490)
191 3ro3_A PINS homolog, G-protein 98.1 1.1E-05 3.7E-10 65.5 9.2 130 375-504 12-158 (164)
192 3bee_A Putative YFRE protein; 98.1 2E-05 6.9E-10 56.7 9.1 73 472-545 3-78 (93)
193 1wao_1 Serine/threonine protei 98.1 1.9E-05 6.5E-10 76.9 11.6 113 351-467 16-134 (477)
194 2kat_A Uncharacterized protein 98.1 6.9E-06 2.4E-10 62.5 6.8 64 474-537 18-81 (115)
195 1zu2_A Mitochondrial import re 98.1 2.7E-06 9.1E-11 67.3 4.3 85 457-541 16-123 (158)
196 3dss_A Geranylgeranyl transfer 98.1 0.00026 8.9E-09 64.2 17.9 184 353-540 41-269 (331)
197 1na3_A Designed protein CTPR2; 98.0 1.8E-05 6.3E-10 56.9 8.2 81 443-523 9-91 (91)
198 2hr2_A Hypothetical protein; a 98.0 9.6E-06 3.3E-10 64.2 6.7 72 445-516 59-143 (159)
199 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.2E-05 7.5E-10 76.2 10.8 115 409-542 270-384 (457)
200 1ihg_A Cyclophilin 40; ppiase 98.0 1.4E-05 4.8E-10 75.0 8.9 116 407-540 223-338 (370)
201 1klx_A Cysteine rich protein B 98.0 8.1E-05 2.8E-09 58.5 11.8 90 449-540 31-128 (138)
202 1dce_A Protein (RAB geranylger 98.0 4.7E-05 1.6E-09 75.6 12.6 158 385-546 42-229 (567)
203 2l6j_A TPR repeat-containing p 97.9 3.5E-05 1.2E-09 57.9 8.3 68 474-541 3-70 (111)
204 3lvg_A Clathrin heavy chain 1; 97.9 3.4E-05 1.2E-09 71.5 8.5 240 36-293 52-326 (624)
205 1na3_A Designed protein CTPR2; 97.8 5.9E-05 2E-09 54.1 7.7 67 474-540 8-74 (91)
206 1klx_A Cysteine rich protein B 97.7 0.00047 1.6E-08 54.1 12.0 111 386-505 9-127 (138)
207 2kat_A Uncharacterized protein 97.7 8.3E-05 2.8E-09 56.3 7.1 80 426-507 4-85 (115)
208 1zu2_A Mitochondrial import re 97.7 7.8E-05 2.7E-09 58.9 6.5 73 460-539 63-148 (158)
209 2kc7_A BFR218_protein; tetratr 97.7 5.8E-05 2E-09 55.3 5.5 82 449-538 6-90 (99)
210 3n71_A Histone lysine methyltr 97.6 0.00021 7.3E-09 69.1 9.7 123 382-504 319-464 (490)
211 2kc7_A BFR218_protein; tetratr 97.6 0.00019 6.7E-09 52.4 7.3 63 480-542 5-68 (99)
212 3qww_A SET and MYND domain-con 97.4 0.00012 4.1E-09 69.6 5.6 59 478-536 343-409 (433)
213 1wy6_A Hypothetical protein ST 97.4 0.022 7.4E-07 42.6 16.1 147 376-541 9-157 (172)
214 3lvg_A Clathrin heavy chain 1; 97.4 9.9E-05 3.4E-09 68.5 4.0 237 139-393 54-325 (624)
215 3qwp_A SET and MYND domain-con 97.4 0.00021 7.1E-09 68.1 6.3 91 414-504 294-400 (429)
216 3ma5_A Tetratricopeptide repea 97.4 0.00051 1.7E-08 50.3 6.9 64 442-505 6-71 (100)
217 1qsa_A Protein (soluble lytic 97.2 0.2 6.8E-06 49.8 26.4 259 242-515 74-355 (618)
218 3ly7_A Transcriptional activat 97.2 0.0085 2.9E-07 54.6 14.1 68 472-540 274-341 (372)
219 3ly7_A Transcriptional activat 97.2 0.0039 1.3E-07 56.8 11.7 140 369-510 191-345 (372)
220 3qww_A SET and MYND domain-con 97.1 0.0022 7.4E-08 61.0 9.8 95 419-513 310-425 (433)
221 3qwp_A SET and MYND domain-con 96.9 0.0032 1.1E-07 59.9 9.7 90 379-468 294-396 (429)
222 1pc2_A Mitochondria fission pr 96.9 0.0012 4.3E-08 51.4 5.5 92 422-515 13-111 (152)
223 3mkq_A Coatomer beta'-subunit; 96.8 0.05 1.7E-06 57.0 18.8 99 250-365 662-760 (814)
224 3u64_A Protein TP_0956; tetrat 96.8 0.0045 1.5E-07 54.0 8.6 72 475-546 199-277 (301)
225 3bee_A Putative YFRE protein; 96.8 0.0099 3.4E-07 42.4 9.0 71 440-510 3-78 (93)
226 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0058 2E-07 44.9 8.0 71 446-516 8-87 (104)
227 3mkq_A Coatomer beta'-subunit; 96.6 0.045 1.5E-06 57.4 16.1 100 351-468 662-761 (814)
228 2v5f_A Prolyl 4-hydroxylase su 96.5 0.012 4.3E-07 43.0 8.0 67 474-540 4-77 (104)
229 4gns_B Protein CSD3, chitin bi 96.2 0.02 6.7E-07 57.9 10.0 58 479-536 341-398 (754)
230 1pc2_A Mitochondria fission pr 96.2 0.025 8.6E-07 44.1 8.3 77 390-469 16-97 (152)
231 4ady_A RPN2, 26S proteasome re 95.8 2.2 7.4E-05 44.3 31.4 116 350-470 499-621 (963)
232 4h7y_A Dual specificity protei 95.6 0.16 5.5E-06 39.0 10.4 108 406-515 12-134 (161)
233 1nzn_A CGI-135 protein, fissio 95.5 0.37 1.3E-05 36.1 11.8 75 441-515 33-114 (126)
234 3mkq_B Coatomer subunit alpha; 95.5 0.57 1.9E-05 37.5 13.7 42 354-397 18-59 (177)
235 1nzn_A CGI-135 protein, fissio 95.4 0.033 1.1E-06 41.7 6.0 71 472-542 32-107 (126)
236 3mkq_B Coatomer subunit alpha; 95.3 0.87 3E-05 36.5 14.7 130 380-536 13-142 (177)
237 1wy6_A Hypothetical protein ST 95.0 0.64 2.2E-05 35.0 11.4 65 373-439 92-156 (172)
238 1y8m_A FIS1; mitochondria, unk 94.7 0.33 1.1E-05 37.0 9.7 33 478-510 80-112 (144)
239 4b4t_P 26S proteasome regulato 94.4 3.3 0.00011 39.4 18.5 258 82-371 29-325 (445)
240 2wpv_A GET4, UPF0363 protein Y 94.3 2.7 9.4E-05 37.4 17.4 168 140-333 34-215 (312)
241 3lpz_A GET4 (YOR164C homolog); 94.3 2.9 9.9E-05 37.5 21.7 169 343-537 37-215 (336)
242 3u64_A Protein TP_0956; tetrat 94.2 0.13 4.6E-06 44.9 7.4 76 388-468 179-265 (301)
243 3o48_A Mitochondria fission 1 93.8 0.26 8.8E-06 37.1 7.3 34 477-510 80-113 (134)
244 2wpv_A GET4, UPF0363 protein Y 93.4 4.1 0.00014 36.3 21.4 170 343-538 35-217 (312)
245 3lpz_A GET4 (YOR164C homolog); 93.2 4.6 0.00016 36.2 18.2 133 141-284 37-180 (336)
246 3ffl_A Anaphase-promoting comp 93.1 0.25 8.5E-06 38.9 6.5 123 401-537 12-150 (167)
247 4h7y_A Dual specificity protei 92.8 0.91 3.1E-05 35.0 9.0 36 67-103 11-52 (161)
248 1qsa_A Protein (soluble lytic 92.5 9.3 0.00032 38.0 31.7 334 143-501 76-439 (618)
249 3ffl_A Anaphase-promoting comp 91.7 0.98 3.3E-05 35.5 8.3 56 379-434 27-90 (167)
250 4ady_A RPN2, 26S proteasome re 91.3 16 0.00054 38.1 34.7 26 106-131 232-257 (963)
251 4gns_B Protein CSD3, chitin bi 91.2 0.76 2.6E-05 46.6 9.2 52 380-433 345-397 (754)
252 1v54_E Cytochrome C oxidase po 91.0 1.9 6.5E-05 30.4 8.2 64 387-452 25-88 (109)
253 2ff4_A Probable regulatory pro 90.9 0.69 2.3E-05 43.2 8.1 57 480-536 176-232 (388)
254 2uwj_G Type III export protein 90.6 3.2 0.00011 29.1 9.0 87 117-208 19-105 (115)
255 4fhn_B Nucleoporin NUP120; pro 90.4 15 0.0005 40.0 18.9 141 312-460 818-988 (1139)
256 1zbp_A Hypothetical protein VP 90.2 0.66 2.3E-05 39.9 6.6 54 486-539 8-61 (273)
257 2p58_C Putative type III secre 89.6 3.5 0.00012 29.0 8.4 87 117-208 20-106 (116)
258 2ff4_A Probable regulatory pro 88.7 3.6 0.00012 38.3 11.2 72 377-449 176-251 (388)
259 3esl_A Checkpoint serine/threo 88.7 4.3 0.00015 33.1 10.0 52 491-542 95-148 (202)
260 3txn_A 26S proteasome regulato 88.5 15 0.00052 33.9 15.5 162 307-468 20-206 (394)
261 4b4t_P 26S proteasome regulato 87.6 19 0.00066 34.1 20.9 163 375-537 140-323 (445)
262 2y69_E Cytochrome C oxidase su 87.3 4.2 0.00014 30.5 8.2 63 388-452 69-131 (152)
263 2uwj_G Type III export protein 86.3 6.1 0.00021 27.7 8.0 78 18-99 21-98 (115)
264 4fhn_B Nucleoporin NUP120; pro 86.2 6.4 0.00022 42.8 12.8 63 477-539 901-968 (1139)
265 4a1g_A Mitotic checkpoint seri 85.7 7.2 0.00025 30.2 9.3 49 494-542 84-134 (152)
266 2p58_C Putative type III secre 85.5 6.4 0.00022 27.7 7.8 78 18-99 22-99 (116)
267 1zbp_A Hypothetical protein VP 85.1 3.1 0.0001 35.8 7.6 52 416-469 6-57 (273)
268 1v54_E Cytochrome C oxidase po 83.5 9.8 0.00033 26.9 8.6 63 286-349 25-87 (109)
269 3o48_A Mitochondria fission 1 83.0 8 0.00027 29.1 8.2 68 473-540 38-109 (134)
270 2wvi_A Mitotic checkpoint seri 82.1 12 0.0004 29.5 9.2 48 494-541 79-128 (164)
271 2qx5_A Nucleoporin NIC96; mRNA 78.4 58 0.002 32.6 17.5 44 173-217 155-198 (661)
272 1wdy_A 2-5A-dependent ribonucl 78.3 29 0.00098 30.0 12.2 21 44-64 8-28 (285)
273 1y8m_A FIS1; mitochondria, unk 77.8 21 0.00072 27.2 11.1 71 472-542 36-110 (144)
274 2y69_E Cytochrome C oxidase su 76.7 22 0.00074 26.8 8.6 63 286-349 68-130 (152)
275 1wdy_A 2-5A-dependent ribonucl 76.5 16 0.00056 31.6 10.1 170 25-204 20-213 (285)
276 3kea_A K1L; tropism, ANK repea 76.2 14 0.00047 32.5 9.4 143 44-194 34-182 (285)
277 3ltj_A Alpharep-4; protein eng 73.1 36 0.0012 27.6 16.6 162 26-196 16-177 (201)
278 4b4t_R RPN7, 26S proteasome re 72.7 11 0.00037 35.6 8.1 94 343-436 133-237 (429)
279 4b4t_R RPN7, 26S proteasome re 68.1 30 0.001 32.6 10.0 57 242-298 133-195 (429)
280 4aez_C MAD3, mitotic spindle c 68.0 15 0.00053 30.5 6.8 31 474-504 149-179 (223)
281 3ltm_A Alpha-REP4; protein eng 66.3 52 0.0018 26.8 19.6 43 244-286 37-79 (211)
282 3bqo_A Telomeric repeat-bindin 65.8 36 0.0012 27.5 8.1 67 459-525 94-167 (211)
283 3ltm_A Alpha-REP4; protein eng 65.6 54 0.0019 26.7 19.2 164 259-435 21-184 (211)
284 3hra_A Ankyrin repeat family p 64.8 27 0.00091 28.3 8.2 151 45-204 9-172 (201)
285 3kea_A K1L; tropism, ANK repea 64.1 28 0.00097 30.4 8.6 171 24-207 45-225 (285)
286 4b4t_S RPN3, 26S proteasome re 63.6 20 0.00067 34.4 7.5 67 443-509 231-304 (523)
287 1k1a_A B-cell lymphoma 3-encod 62.1 63 0.0022 26.9 10.3 85 77-165 14-102 (241)
288 3eu9_A Huntingtin-interacting 61.9 18 0.00063 30.2 6.8 21 44-64 45-65 (240)
289 3esl_A Checkpoint serine/threo 60.4 57 0.0019 26.6 8.7 57 385-442 92-149 (202)
290 1n11_A Ankyrin; clathrin, BAND 57.1 90 0.0031 29.1 11.4 114 44-165 17-136 (437)
291 2d2s_A Exocyst complex compone 55.3 38 0.0013 28.6 7.3 23 75-97 24-46 (235)
292 4b4t_S RPN3, 26S proteasome re 55.2 31 0.0011 33.1 7.3 59 408-470 232-297 (523)
293 3txn_A 26S proteasome regulato 54.5 1.3E+02 0.0046 27.7 26.8 286 242-540 21-345 (394)
294 3eu9_A Huntingtin-interacting 51.4 60 0.002 26.9 8.3 110 46-164 14-131 (240)
295 1k1a_A B-cell lymphoma 3-encod 50.6 1.1E+02 0.0036 25.4 11.4 48 16-63 19-68 (241)
296 2fu4_A Ferric uptake regulatio 47.0 58 0.002 21.7 6.0 62 93-155 6-68 (83)
297 3jxi_A Vanilloid receptor-rela 47.0 37 0.0013 28.9 6.3 91 76-167 9-118 (260)
298 1ya0_A SMG-7 transcript varian 46.3 66 0.0023 30.9 8.2 52 485-536 162-213 (497)
299 4a1g_A Mitotic checkpoint seri 45.9 1E+02 0.0035 23.8 8.5 52 390-442 83-135 (152)
300 3bu8_A Telomeric repeat-bindin 45.3 22 0.00074 29.2 3.9 48 423-470 88-141 (235)
301 3ltj_A Alpharep-4; protein eng 45.0 1.2E+02 0.0041 24.3 21.2 80 239-322 27-106 (201)
302 4gq2_M Nucleoporin NUP120; bet 44.9 1.6E+02 0.0055 31.2 11.7 52 413-470 816-867 (950)
303 2wvi_A Mitotic checkpoint seri 44.5 82 0.0028 24.7 7.0 53 390-443 78-131 (164)
304 1n11_A Ankyrin; clathrin, BAND 43.9 1.3E+02 0.0043 28.0 10.1 166 24-204 28-206 (437)
305 3i5p_A Nucleoporin NUP170; hel 43.8 2.3E+02 0.0079 27.3 11.6 68 471-538 174-246 (525)
306 3b7b_A Euchromatic histone-lys 43.6 1.2E+02 0.004 25.1 9.0 194 25-232 26-234 (237)
307 4aez_C MAD3, mitotic spindle c 41.7 1E+02 0.0035 25.6 7.5 53 389-442 131-184 (223)
308 3hra_A Ankyrin repeat family p 41.4 74 0.0025 25.5 7.1 107 78-193 11-126 (201)
309 2ion_A PDCD4, programmed cell 40.1 1.1E+02 0.0039 23.5 7.3 65 344-408 12-81 (152)
310 2nsz_A Programmed cell death p 39.6 88 0.003 23.3 6.4 22 245-266 12-33 (129)
311 2d2s_A Exocyst complex compone 39.4 1E+02 0.0035 26.0 7.5 88 378-469 24-117 (235)
312 2zu6_B Programmed cell death p 38.1 2.1E+02 0.0072 25.3 11.5 200 243-445 6-239 (307)
313 3b7b_A Euchromatic histone-lys 38.1 1.2E+02 0.0041 25.0 8.1 16 149-164 84-99 (237)
314 2nsz_A Programmed cell death p 37.3 1.3E+02 0.0043 22.4 8.6 65 344-408 10-79 (129)
315 3aji_A 26S proteasome non-ATPa 37.3 1.7E+02 0.0058 23.9 9.7 19 45-63 10-28 (231)
316 1oyz_A Hypothetical protein YI 36.7 2E+02 0.0068 24.6 22.2 248 26-318 25-279 (280)
317 2r9g_A AAA ATPase, central reg 36.7 1.7E+02 0.0059 23.8 8.6 47 274-321 14-63 (204)
318 2o03_A Probable zinc uptake re 36.4 67 0.0023 24.0 5.4 49 6-54 13-61 (131)
319 3mwm_A ZUR, putative metal upt 36.4 68 0.0023 24.3 5.5 50 6-55 16-65 (139)
320 3ljn_A Hypothetical protein; a 36.0 72 0.0024 28.9 6.7 91 43-138 22-115 (364)
321 2xig_A Ferric uptake regulatio 35.7 1.5E+02 0.005 22.7 7.6 63 92-155 15-77 (150)
322 3bge_A Predicted ATPase; struc 34.1 1.9E+02 0.0064 23.5 8.0 46 276-321 9-57 (201)
323 2xig_A Ferric uptake regulatio 34.1 78 0.0027 24.3 5.6 62 24-86 13-78 (150)
324 3bu8_A Telomeric repeat-bindin 33.5 2E+02 0.0069 23.7 7.9 48 388-435 88-142 (235)
325 1wgl_A TOLL-interacting protei 33.4 50 0.0017 20.6 3.4 48 496-545 11-59 (59)
326 1mzb_A Ferric uptake regulatio 32.6 77 0.0026 23.8 5.2 45 8-52 22-67 (136)
327 2fe3_A Peroxide operon regulat 32.5 67 0.0023 24.5 4.9 63 93-156 11-73 (145)
328 2fu4_A Ferric uptake regulatio 32.4 1.1E+02 0.0037 20.3 7.7 61 296-357 7-68 (83)
329 2ion_A PDCD4, programmed cell 32.2 74 0.0025 24.6 5.1 24 244-267 13-36 (152)
330 3ygs_P Procaspase 9; apoptosis 31.9 45 0.0015 23.4 3.5 38 52-89 51-88 (97)
331 2w57_A Ferric uptake regulatio 31.9 1.3E+02 0.0044 23.1 6.5 63 93-156 6-69 (150)
332 2qx5_A Nucleoporin NIC96; mRNA 31.8 4E+02 0.014 26.6 19.9 43 73-116 156-198 (661)
333 3ubw_A 14-3-3E, 14-3-3 protein 31.4 2.5E+02 0.0085 24.0 11.9 161 378-539 37-229 (261)
334 3jxi_A Vanilloid receptor-rela 30.6 1E+02 0.0034 26.1 6.4 22 16-37 15-36 (260)
335 2w57_A Ferric uptake regulatio 30.6 93 0.0032 23.9 5.5 45 8-52 21-66 (150)
336 3ctd_A Putative ATPase, AAA fa 30.5 2.3E+02 0.0077 23.3 8.0 50 272-321 33-85 (213)
337 2fe3_A Peroxide operon regulat 30.2 82 0.0028 24.0 5.1 62 24-86 8-73 (145)
338 4gq2_M Nucleoporin NUP120; bet 30.2 3.6E+02 0.012 28.5 11.5 126 245-385 815-949 (950)
339 4ets_A Ferric uptake regulatio 30.1 2E+02 0.0067 22.4 7.7 69 86-155 14-85 (162)
340 4ets_A Ferric uptake regulatio 29.3 1E+02 0.0034 24.1 5.5 64 23-87 18-87 (162)
341 3aji_A 26S proteasome non-ATPa 29.2 1.9E+02 0.0065 23.6 7.9 85 75-165 9-96 (231)
342 2zu6_B Programmed cell death p 29.2 3E+02 0.01 24.3 10.9 56 142-197 6-65 (307)
343 2crb_A Nuclear receptor bindin 28.9 67 0.0023 22.2 3.6 19 482-500 22-40 (97)
344 3qye_A TBC1 domain family memb 27.8 3.2E+02 0.011 24.2 9.8 128 84-218 164-307 (331)
345 4g8k_A 2-5A-dependent ribonucl 27.6 3.2E+02 0.011 24.0 10.3 40 125-164 220-261 (337)
346 3eyy_A Putative iron uptake re 25.8 94 0.0032 23.7 4.7 61 93-155 8-68 (145)
347 2o03_A Probable zinc uptake re 25.6 85 0.0029 23.4 4.3 46 110-155 16-61 (131)
348 3eyy_A Putative iron uptake re 25.0 1E+02 0.0035 23.5 4.8 58 26-85 7-68 (145)
349 2b7e_A PRE-mRNA processing pro 24.5 56 0.0019 20.4 2.4 34 186-219 2-36 (59)
350 3ygs_P Procaspase 9; apoptosis 24.5 1.2E+02 0.004 21.2 4.6 38 254-291 51-88 (97)
351 1mzb_A Ferric uptake regulatio 23.9 2.3E+02 0.0078 21.1 7.7 61 296-357 8-69 (136)
352 2ijq_A Hypothetical protein; s 23.8 2.6E+02 0.0089 21.8 6.8 12 457-468 46-57 (161)
353 2pnn_A Transient receptor pote 23.7 1.6E+02 0.0055 25.0 6.5 20 80-99 21-40 (273)
354 3mwm_A ZUR, putative metal upt 23.3 1.4E+02 0.0049 22.4 5.3 47 109-155 18-64 (139)
355 2ijq_A Hypothetical protein; s 23.3 2.7E+02 0.0092 21.7 7.5 53 384-436 44-104 (161)
356 3twr_A Tankyrase-2; ankyrin re 22.9 2.5E+02 0.0085 21.2 8.7 57 44-105 11-71 (165)
357 3t8k_A Uncharacterized protein 22.4 2.6E+02 0.0089 22.1 7.1 91 48-138 13-108 (186)
358 2rfa_A Transient receptor pote 21.9 3.1E+02 0.011 22.3 7.8 48 45-93 7-58 (232)
359 2qq8_A TBC1 domain family memb 21.8 1.6E+02 0.0056 26.3 6.2 44 393-436 214-257 (334)
360 3qil_A Clathrin heavy chain 1; 21.7 98 0.0034 22.7 3.6 54 105-161 33-86 (125)
361 2cfu_A SDSA1; SDS-hydrolase, l 21.2 1.8E+02 0.0063 29.1 6.9 62 460-524 437-498 (658)
362 2rfa_A Transient receptor pote 21.2 3.3E+02 0.011 22.0 9.3 19 45-63 41-59 (232)
363 4g8k_A 2-5A-dependent ribonucl 21.0 4.2E+02 0.014 23.2 9.8 43 115-164 281-323 (337)
364 2p1h_A APAF-1, apoptotic prote 20.9 2.1E+02 0.0071 19.6 5.8 60 123-186 24-83 (94)
365 4b4t_O 26S proteasome regulato 20.8 2.4E+02 0.0081 26.0 7.2 23 481-503 133-155 (393)
366 3qil_A Clathrin heavy chain 1; 20.8 18 0.0006 26.6 -0.4 71 48-126 16-86 (125)
367 2etb_A Transient receptor pote 20.7 2.2E+02 0.0075 23.8 6.7 57 75-132 5-71 (256)
368 3t5v_B Nuclear mRNA export pro 20.3 1.2E+02 0.0041 28.7 5.0 29 510-538 221-249 (455)
369 3ljn_A Hypothetical protein; a 20.1 3.9E+02 0.013 23.8 8.7 81 76-164 24-106 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-43 Score=360.94 Aligned_cols=484 Identities=8% Similarity=-0.053 Sum_probs=402.6
Q ss_pred HHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHH
Q 045069 47 LYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFV 126 (554)
Q Consensus 47 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 126 (554)
.+.+.|....+...+..++.+++..|+.++..|.+.|++++|+.+|++|.+ ..|+..++..++.+|.+.|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 345677788888888888888999999999999999999999999999986 467889999999999999999999999
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCC-------------------CcchHHHHHHHHHhCCChh
Q 045069 127 HGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDP-------------------DLVLCNSMISGFAHCGFWD 187 (554)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~ 187 (554)
++.+... +++..+++.++.+|.+.|++++|+++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987543 678899999999999999999999999965433 3778999999999999999
Q ss_pred hHHHHHHHHHHCCCCCC-hhhHHHHHHHcccCCccchhhH--H-HHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHH
Q 045069 188 KSLQLFDWMLRLGKTPD-EYTLVGLISGLWEPSLLSVGQG--I-HGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVF 263 (554)
Q Consensus 188 ~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 263 (554)
+|.++|++|.+.+ |+ ...+..+...+...+..+.+.. + +..+...+..+...+++.++..|.+.|++++|.++|
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999998863 44 3445555544443333222111 1 344444455556667777888999999999999999
Q ss_pred hhcCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchH
Q 045069 264 NSLFH--PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSV 341 (554)
Q Consensus 264 ~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 341 (554)
+++.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99966 889999999999999999999999999998765 3367789999999999999999999999998664 5678
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
.+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..+|..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 8999999999999999999999998763 456799999999999999999999999999853 346789999999999
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC--hhhHHHHHHHHHhcC
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-------KPVD--PAVSGALLSCCHIYG 489 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~~ 489 (554)
+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999884 45678999999999999999999999999873 2455 679999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++++|.+.++++.+..|+++..+..++.+|.+.|++++|.++++++.+..+.
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999987543
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-41 Score=345.45 Aligned_cols=479 Identities=10% Similarity=-0.039 Sum_probs=412.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHH
Q 045069 35 LRDPFYATKLVRLYALNNVLPSARILFDKTP--QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITR 112 (554)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 112 (554)
.+++..|+.++..|.+.|++++|..+|+++. .|+..++..++.+|.+.|++++|+.+|+.+.. .+++..+++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAF 158 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHH
Confidence 3678899999999999999999999999886 57778999999999999999999999999865 3678899999999
Q ss_pred HhhcCCChhhHHHHHHHHHHh---------------cCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--C-CcchHH
Q 045069 113 ACSENSDLPGLRFVHGGAIVS---------------GLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--P-DLVLCN 174 (554)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~ 174 (554)
++.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|++.|+++.+ | +...+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999853211 2234588999999999999999999999999976 3 334455
Q ss_pred HHHHHHHhCCChhhHHH--H-HHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045069 175 SMISGFAHCGFWDKSLQ--L-FDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYA 251 (554)
Q Consensus 175 ~li~~~~~~~~~~~a~~--~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (554)
.+...+...+..+.+.. + +..+...+..+...+|..++..+.+.|++++|..+++.+.+. +++..++..++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 55544443333222211 1 455555555566677888899999999999999999988776 588999999999999
Q ss_pred hcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHH
Q 045069 252 RCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVI 328 (554)
Q Consensus 252 ~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 328 (554)
+.|++++|.++|+++ .+.+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999999999998 34578899999999999999999999999998653 55788999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC
Q 045069 329 HGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP 405 (554)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p 405 (554)
|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 99998865 45678999999999999999999999998763 577899999999999999999999999999853 34
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHh---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhH
Q 045069 406 DESTFSALLCACCHGGLVNDGREIFTRMTEEY---GIQAK--TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVS 478 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 478 (554)
+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++. .+.+..+|
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 553 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH 553 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence 67899999999999999999999999998732 55777 7899999999999999999999999874 36688999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
..++.+|...|++++|.+.++++++.+|+++..+..++.+|.
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988764
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.1e-27 Score=227.32 Aligned_cols=371 Identities=16% Similarity=0.128 Sum_probs=252.3
Q ss_pred HHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH
Q 045069 76 IRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (554)
...+.+.|++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345566777777777777776652 2233345555556667777777777777766654 33566666677777777777
Q ss_pred hHHHHhhcccCC--C-CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHH
Q 045069 156 DEAIKVFDGVSD--P-DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCL 232 (554)
Q Consensus 156 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 232 (554)
++|+..|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+. .|+..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~-------------------------- 135 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLY-------------------------- 135 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCT--------------------------
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcH--------------------------
Confidence 777776666543 3 2335666666666666666666666666543 22221
Q ss_pred HhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 045069 233 KSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLI 309 (554)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 309 (554)
..+..+...+...|++++|.+.|+++ .+.+..+|..+...+...|++++|...|+++.
T Consensus 136 --------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------- 196 (388)
T 1w3b_A 136 --------CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV----------- 196 (388)
T ss_dssp --------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------
T ss_pred --------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------
Confidence 11222233333334444444443333 11233445555555555555555555555544
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC--CC-CcchHHHHHHHHHcCC
Q 045069 310 ASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS--ER-NIITYNSVILGLGLHG 386 (554)
Q Consensus 310 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~ 386 (554)
+.+ +.+...+..+...+...|++++|...|++.. .| +..++..+...+...|
T Consensus 197 ------------------------~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 197 ------------------------TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp ------------------------HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ------------------------hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC
Confidence 433 2334556666666777777777777776554 23 4567777888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSF 465 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 465 (554)
++++|...|+++.+. .|+ ..+|..+...+.+.|++++|...|+++.+. .+.+..++..++..+.+.|++++|.+.
T Consensus 252 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (388)
T 1w3b_A 252 LIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRL 327 (388)
T ss_dssp CHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999998884 454 568888999999999999999999999884 566788899999999999999999999
Q ss_pred HHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 466 IWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 466 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
++++.. +.+..++..++.++.+.|++++|...++++++.+|+++..+..++.++...|+
T Consensus 328 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 328 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 988653 55678899999999999999999999999999999999999999998887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.9e-29 Score=246.19 Aligned_cols=215 Identities=11% Similarity=0.036 Sum_probs=147.6
Q ss_pred HHHHHHHHHhHHcCCCCCcc-cHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcc
Q 045069 86 NDAKSLFKNLLRTQLKPDNF-TYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 86 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
..+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+...++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 34566777787777766554 58889999999999999999999999999999999999999999887764331
Q ss_pred cCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHH
Q 045069 165 VSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSS 244 (554)
Q Consensus 165 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 244 (554)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||.
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---- 140 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL---- 140 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH----
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc----
Confidence 234557888999999999999999999999998888888888888888888888877654
Q ss_pred HHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcch
Q 045069 245 VLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 324 (554)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++
T Consensus 141 ---------------------------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 141 ---------------------------RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADK 193 (501)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred ---------------------------ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHH
Confidence 44555555555555666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 045069 325 GAVIHGYVIQHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (554)
|.+++++|.+.|..|+..||+.++..|+.
T Consensus 194 A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 194 VYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666655554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.9e-26 Score=220.60 Aligned_cols=355 Identities=14% Similarity=0.085 Sum_probs=290.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHHCCCCCCh-hhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCC
Q 045069 177 ISGFAHCGFWDKSLQLFDWMLRLGKTPDE-YTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNC 255 (554)
Q Consensus 177 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 255 (554)
...+.+.|++++|.+.+.++.+. .|+. ..+..+...+...|+++.|...++...+.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34455667777777777666554 3333 344444455566677777777666666543 4456677888888888888
Q ss_pred hhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHH
Q 045069 256 MNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYV 332 (554)
Q Consensus 256 ~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 332 (554)
+++|...|+++ .+.+..+|..+..++.+.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888877 33455678889999999999999999999988763 223445667777888889999999999998
Q ss_pred HHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HH
Q 045069 333 IQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ES 408 (554)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 408 (554)
.+.. +.+..++..+...+...|++++|...|+++.+ | +...|..+...+...|++++|...+++..+. .|+ ..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 8875 44578899999999999999999999998873 4 4567888999999999999999999999984 554 67
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
++..+...+...|++++|...|+++.+. .+.+..++..++..+.+.|++++|.+.++++. .+.+..++..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 8999999999999999999999999873 44457889999999999999999999999875 4678889999999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++++++..+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999987643
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-28 Score=239.90 Aligned_cols=184 Identities=13% Similarity=0.142 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC---------cchhHHHHHHHHHhcCCchHH
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN---------VWPGAVIHGYVIQHGFELSVM 342 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 342 (554)
..++.+|++|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987765 467899999999999999999
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccC----CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMS----ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999987 48999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA 456 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (554)
+.|++++|.+++++|.+. +..|+..||+.++..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999996 9999999999999998753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.8e-25 Score=219.07 Aligned_cols=428 Identities=10% Similarity=-0.078 Sum_probs=193.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 045069 71 LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYS 150 (554)
Q Consensus 71 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 150 (554)
.+......+.+.|++++|+..|+++.+.+ |+...|..+..++.+.|++++|...++.+.+.++ .+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHH
Confidence 34445555666666666666666666543 4555666666666666666666666666665542 24455566666666
Q ss_pred cCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCC-------------------CChhhH
Q 045069 151 KLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKT-------------------PDEYTL 208 (554)
Q Consensus 151 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------------p~~~~~ 208 (554)
..|++++|...|+++.. ++......++..+........+.+.+..+...+.. |+....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 66666666666655432 22223333333333222222222222222111111 111111
Q ss_pred HHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHh---cCChhhHHHHHhhcCC-----------------
Q 045069 209 VGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYAR---CNCMNSAYHVFNSLFH----------------- 268 (554)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------- 268 (554)
...+..+......... ..+.+...+..+...+.. .|++++|...|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 165 ASFFGIFKPELTFANY----------DESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp HHHHTTSCCCCCCSSC----------CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred HHHHhhcCHHHHHHHh----------cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 1111111110000000 001112222222222222 4445555444444311
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 045069 269 PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALV 348 (554)
Q Consensus 269 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 348 (554)
.+..++..+...+...|++++|...++++.+.... ...+..+..++...|+++.|...++.+.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH
Confidence 12234445555555555555555555555544322 4455555555555555555555555555443 22344455555
Q ss_pred HHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHH
Q 045069 349 DMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVND 425 (554)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 425 (554)
..|...|++++|...|+...+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 555555555555555554431 233444455555555555555555555555421 1123344445555555555555
Q ss_pred HHHHHHHhHHHhCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHH
Q 045069 426 GREIFTRMTEEYGIQAK----TEHYIYMVKLLGL---AGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEI 496 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 496 (554)
|...++++.+...-.++ ...+..++..+.. .|++++|.+.++++. .+.+..++..+..++...|++++|..
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 55555554442111111 2244555555555 555555555554432 23344444555555555555555555
Q ss_pred HHHHHHhcCCCCchhHHHH
Q 045069 497 VAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 497 ~~~~~~~~~p~~~~~~~~l 515 (554)
.++++.+..|.++..+..+
T Consensus 471 ~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 471 LFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHH
Confidence 5555555555554444433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.3e-25 Score=220.27 Aligned_cols=429 Identities=11% Similarity=-0.035 Sum_probs=322.1
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHH
Q 045069 105 FTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFA 181 (554)
Q Consensus 105 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 181 (554)
..+......+.+.|++++|...|+.+.+.+ |+...+..+..++.+.|++++|+..|+++.+ .+..+|..+..++.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 345667778889999999999999999986 6899999999999999999999999998765 45568899999999
Q ss_pred hCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHh---cCChhh
Q 045069 182 HCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYAR---CNCMNS 258 (554)
Q Consensus 182 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ 258 (554)
+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+............. ......
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999988753 34444444444333322222222222211111111111000000000000 011111
Q ss_pred HHHHHhhc---------C-CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC--------CCHHHHHHH
Q 045069 259 AYHVFNSL---------F-HPDLVTWSALITGYSQ---QGDYGKALYYFRKLNM-----QGKK--------ADPVLIASV 312 (554)
Q Consensus 259 a~~~~~~~---------~-~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l 312 (554)
+...+... . +.+...+......+.. .|++++|...++++.+ .... .+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11111111 1 1224455555555554 8999999999999987 3212 234567778
Q ss_pred HHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChH
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTY 389 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 389 (554)
...+...|+++.|...++.+.+.... ...+..+..++...|++++|...++.+.+ .+...+..+...+...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 88999999999999999999988644 88899999999999999999999998764 45678899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
+|...++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|.+.++++
T Consensus 322 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 322 QAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999853 224568888999999999999999999999884 4556788999999999999999999999886
Q ss_pred CC--CCC------hhhHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 470 PK--PVD------PAVSGALLSCCHI---YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 470 ~~--~~~------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.. +.+ ...+..++..+.. .|++++|...++++.+..|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 42 222 3388899999999 999999999999999999999999999999999999999999999999987
Q ss_pred CCc
Q 045069 539 GLR 541 (554)
Q Consensus 539 ~~~ 541 (554)
.+.
T Consensus 479 ~~~ 481 (514)
T 2gw1_A 479 ART 481 (514)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=5.8e-23 Score=206.68 Aligned_cols=352 Identities=11% Similarity=0.015 Sum_probs=173.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHH
Q 045069 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTA 148 (554)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 148 (554)
...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.+.|++++|.+.++.+.+.++ .+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 3456777778888888888888888887763 23566777788888888888888888888877753 366777778888
Q ss_pred HHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHC------CCCCChhhHHHHHHHcccCCccc
Q 045069 149 YSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRL------GKTPDEYTLVGLISGLWEPSLLS 222 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~ 222 (554)
+...|++++|+..|+.+. .++...+..+..+...+....|...++++... ...|+.......+.. .+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI----FDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT----SCHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh----cChH
Confidence 888888888888886442 22222233344455555567788888777442 122333332222211 1111
Q ss_pred hhhHHHHHHHHhcCCCch---hHHHHHHHHHHh--------cCChhhHHHHHhhcCC--CC--------hhhHHHHHHHH
Q 045069 223 VGQGIHGFCLKSSFDSYD---YVSSVLVSMYAR--------CNCMNSAYHVFNSLFH--PD--------LVTWSALITGY 281 (554)
Q Consensus 223 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~ 281 (554)
.+...+. .....+. .....+...+.. .|++++|..+++.+.. |+ ..++..+...+
T Consensus 178 ~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 178 LEVSSVN----TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHTSC----CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh----hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 1100000 0000000 011222222111 1245555555555422 11 11233444445
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI 361 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (554)
...|++++|...++++.+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 5555555555555555443 2334444445555555555555555555554443 223344444444455555555555
Q ss_pred HHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 362 QVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 362 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
..|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 54444331 223344444444444444555544444444421 11223444444444444444444444444433
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=5e-22 Score=195.10 Aligned_cols=345 Identities=11% Similarity=0.027 Sum_probs=230.9
Q ss_pred CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHH
Q 045069 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248 (554)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (554)
+...+..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.+. .+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 45567788888888888888888888887642 23455566666666666666666666665555432 22344444444
Q ss_pred HHHhcCChhhHHHHHhhcCC--C-Ch---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 045069 249 MYARCNCMNSAYHVFNSLFH--P-DL---VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANV 322 (554)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~--~-~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 322 (554)
+|.+.|++++|.+.|+++.. | +. ..+..++..+... .+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 44444444444444444421 1 11 2333332220000 011123335566777
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHH
Q 045069 323 WPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDII 399 (554)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 399 (554)
+.|...++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777766654 34566677777777777777777777776652 455677778888888888888888888887
Q ss_pred HcCCCCCHH-HHHHH------------HHHHhcCCchHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHH
Q 045069 400 EKGLNPDES-TFSAL------------LCACCHGGLVNDGREIFTRMTEEYGIQAK-----TEHYIYMVKLLGLAGNLEE 461 (554)
Q Consensus 400 ~~g~~p~~~-~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~ 461 (554)
+ ..|+.. .+..+ ...+...|++++|...|+++.+. .|+ ...+..++.++.+.|++++
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 6 344433 34333 77888899999999999998774 343 3467888889999999999
Q ss_pred HHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH------------HHHccC----
Q 045069 462 AYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN------------TYAEDG---- 523 (554)
Q Consensus 462 A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g---- 523 (554)
|++.++++. .+.+...|..++.+|...|++++|...++++++..|+++..+..++. .|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999998864 35678889999999999999999999999999999999999888883 355555
Q ss_pred -ChhHHHHHHHH-HhhcCCccCC
Q 045069 524 -RWDDVMKLRDD-IVDNGLRKEA 544 (554)
Q Consensus 524 -~~~~A~~~~~~-~~~~~~~~~~ 544 (554)
+.+++.+.+++ .++..+.+.+
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCC
Confidence 66777888886 4555544433
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.1e-21 Score=192.71 Aligned_cols=367 Identities=10% Similarity=-0.003 Sum_probs=268.2
Q ss_pred CCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHH
Q 045069 136 GRDSITSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLI 212 (554)
Q Consensus 136 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 212 (554)
+.+...+..+...+.+.|++++|+.+|+++.+ .+..+|..+..++...|++++|+..|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 34678899999999999999999999998764 467789999999999999999999999998864 33567888899
Q ss_pred HHcccCCccchhhHHHHHHHHhcCCCch---hHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHH
Q 045069 213 SGLWEPSLLSVGQGIHGFCLKSSFDSYD---YVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGK 289 (554)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 289 (554)
..+...|+++.|...++.+.+.... +. ..+..+...+.. ..+..+...+...|++++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999876432 33 555555544321 123344555666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC
Q 045069 290 ALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE 369 (554)
Q Consensus 290 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 369 (554)
|...++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777776543 3455667777777777777777777777776654 44567777777777788888888877777652
Q ss_pred --CCc-chHHHH------------HHHHHcCCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhcCCchHHHHHH
Q 045069 370 --RNI-ITYNSV------------ILGLGLHGFTYQAFEFFRDIIEKGLNPD-----ESTFSALLCACCHGGLVNDGREI 429 (554)
Q Consensus 370 --~~~-~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~ 429 (554)
|+. ..+..+ ...+...|++++|...|+++.+ ..|+ ...+..+...+.+.|++++|...
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 333 233333 6778888999999999998888 4455 34677788888889999999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH------------HHhcC-----C
Q 045069 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSC------------CHIYG-----N 490 (554)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~------------~~~~~-----~ 490 (554)
++++.+. .+.+..++..++.+|...|++++|.+.++++. .+.+...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 9888773 34567888888889999999999999888863 24455666665533 33333 6
Q ss_pred hHHHHHHHHH-HHhcCCCCch----------hHHHHHHHHHccCChhHHH
Q 045069 491 SDLAEIVAHQ-LFENDPRKGA----------YKVMLSNTYAEDGRWDDVM 529 (554)
Q Consensus 491 ~~~A~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A~ 529 (554)
.+++.+.+++ +.+..|++.. .+..+..+|...|+.+++.
T Consensus 396 ~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 6778888886 6666776432 4455666777776666544
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=2.3e-21 Score=195.01 Aligned_cols=421 Identities=10% Similarity=-0.043 Sum_probs=301.7
Q ss_pred ChhHHHHHHHHHHhcCCchhHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHH
Q 045069 37 DPFYATKLVRLYALNNVLPSARILFDKTP---QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRA 113 (554)
Q Consensus 37 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 113 (554)
....+..+...+.+.|++++|+..|+++. +.++.+|..+..+|.+.|++++|+..++++.+.+ +.+..++..+...
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45677888999999999999999999865 4577889999999999999999999999999874 3356788889999
Q ss_pred hhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC------CCcchHHHHHHHHHhCCChh
Q 045069 114 CSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD------PDLVLCNSMISGFAHCGFWD 187 (554)
Q Consensus 114 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~ 187 (554)
+...|++++|...++.+ .. .|+. ....+..+...+....|...++.+.. +........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 99999999999999633 22 2221 22234445555666788888887754 22223445556666677766
Q ss_pred hHHHHHHHHHHCCCCCChh-hHHHHHHHcccC--------CccchhhHHHHHHHHhcCCCc------hhHHHHHHHHHHh
Q 045069 188 KSLQLFDWMLRLGKTPDEY-TLVGLISGLWEP--------SLLSVGQGIHGFCLKSSFDSY------DYVSSVLVSMYAR 252 (554)
Q Consensus 188 ~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 252 (554)
.+...+..... ..+... ....+...+... ++++.|..+++.+.+...... ..++..+...+..
T Consensus 178 ~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence 66554443221 122222 222222222222 477888888888887654322 2356677788899
Q ss_pred cCChhhHHHHHhhc--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHH
Q 045069 253 CNCMNSAYHVFNSL--FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHG 330 (554)
Q Consensus 253 ~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 330 (554)
.|++++|...|+.. ..|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|+++.|...++
T Consensus 256 ~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999998 34567889999999999999999999999998764 3467788999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCC----
Q 045069 331 YVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGL---- 403 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---- 403 (554)
.+.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+...
T Consensus 335 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 335 KAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 999876 44567888999999999999999999998763 4566889999999999999999999999887421
Q ss_pred -CCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 404 -NPDESTFSALLCACCHG----------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 404 -~p~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
......+......+... |++++|...|++..+. .+.+...+..+..+|.+.|++++|.+.+++.
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11112233444555565 7777777777777663 3334555666666666666666666666554
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.9e-19 Score=169.54 Aligned_cols=304 Identities=10% Similarity=-0.022 Sum_probs=163.2
Q ss_pred hHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHh
Q 045069 207 TLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQ 283 (554)
Q Consensus 207 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~ 283 (554)
.+..+...+...|+++.|...++.+.+... .+...+..+...+...|++++|...++++ .+.+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 344444455555555555555555554432 23344445555555555555555555544 22233445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---C-HHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHH
Q 045069 284 QGDYGKALYYFRKLNMQGKKA---D-PVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGL 359 (554)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~~---~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 359 (554)
.|++++|...++++.+. .| + ...+..+.... ....+..+...+...|++++
T Consensus 84 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCHHH
T ss_pred cCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCHHH
Confidence 55555555555555433 22 1 11111110000 00001112455666666666
Q ss_pred HHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 360 GIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 360 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
|...++.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++..+.
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666665542 334456666666666666666666666666631 224456666666666666666666666666553
Q ss_pred hCCCCChhHHH------------HHHHHHHhcCChHHHHHHHHhCCC--CCCh----hhHHHHHHHHHhcCChHHHHHHH
Q 045069 437 YGIQAKTEHYI------------YMVKLLGLAGNLEEAYSFIWSLPK--PVDP----AVSGALLSCCHIYGNSDLAEIVA 498 (554)
Q Consensus 437 ~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~~l~~~~~~~~~~~~A~~~~ 498 (554)
.+.+...+. .++..+.+.|++++|.+.++++.. +.++ ..+..+..++...|++++|...+
T Consensus 218 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 218 --DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 222222222 224556666777777777666431 2222 22334556666777777777777
Q ss_pred HHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 499 HQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 499 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+++++.+|+++..+..++.++...|++++|.+.++++.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777777777777777777777777777776654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=9.1e-19 Score=166.11 Aligned_cols=324 Identities=10% Similarity=-0.010 Sum_probs=239.7
Q ss_pred CcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHH
Q 045069 169 DLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVS 248 (554)
Q Consensus 169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 248 (554)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34567788899999999999999999998763 3456788888899999999999999999998875 335678899999
Q ss_pred HHHhcCChhhHHHHHhhcCC--C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCc
Q 045069 249 MYARCNCMNSAYHVFNSLFH--P----DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANV 322 (554)
Q Consensus 249 ~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 322 (554)
.+...|++++|...|++... | +...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999999999843 3 2333333321100 01122233344555555
Q ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHH
Q 045069 323 WPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDII 399 (554)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 399 (554)
+.|...++.+.+.. +.+...+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555543 33455666677777777777777777776553 344567777777778888888888888877
Q ss_pred HcCCCCCH-HHHH------------HHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh----hHHHHHHHHHHhcCChHHH
Q 045069 400 EKGLNPDE-STFS------------ALLCACCHGGLVNDGREIFTRMTEEYGIQAKT----EHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 400 ~~g~~p~~-~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 462 (554)
+. .|+. ..+. .+...+.+.|++++|...++++.+. .+.+. ..+..+...+...|++++|
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 74 3432 2222 2356688899999999999999874 22233 3355678889999999999
Q ss_pred HHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 463 YSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
.+.+++.. .+.++..+..++.++...|++++|...++++++.+|+++.....+..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99998864 3567889999999999999999999999999999999999998887766543
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=1e-18 Score=163.72 Aligned_cols=287 Identities=11% Similarity=-0.017 Sum_probs=210.9
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVL 313 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 313 (554)
+.+..++..+...+...|++++|.++|+++ .+.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 344555566666777777777777777776 23345566667777777888888888888777653 23455666677
Q ss_pred HHHhccC-CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChH
Q 045069 314 AAAAKSA-NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTY 389 (554)
Q Consensus 314 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 389 (554)
..+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777777 7777888887777654 33466777788888888888888888887653 34566777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC-------CCCChhHHHHHHHHHHhcCChHHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG-------IQAKTEHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A 462 (554)
+|...++++.+.. +.+...+..+...+...|++++|...+++..+... .+....++..++..+...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888742 23456788888888888888888888888876411 134467888888888888888888
Q ss_pred HHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HccCChh
Q 045069 463 YSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY-AEDGRWD 526 (554)
Q Consensus 463 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 526 (554)
.+.+++.. .+.+...+..+..++...|++++|...++++.+.+|+++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 88888764 3556778888888888888888898888888888888888888888877 4555543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=1e-18 Score=163.68 Aligned_cols=267 Identities=6% Similarity=-0.089 Sum_probs=231.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 045069 269 PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALV 348 (554)
Q Consensus 269 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 348 (554)
.+...+..+...+...|++++|..+++++.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466778888889999999999999999998764 3344456667788899999999999999999875 45678888999
Q ss_pred HHHHccC-ChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchH
Q 045069 349 DMYSKCG-YLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVN 424 (554)
Q Consensus 349 ~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 424 (554)
..+...| ++++|...|++..+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999999853 223567777899999999999
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CCChhhHHHHHHHHHhcCChHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----------PVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
+|...+++..+ ..+.+...+..++..+...|++++|.+.++++.. +.....+..++.++...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 3455688899999999999999999999987631 3446788999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 494 AEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
|...++++.+..|+++..+..++.++.+.|++++|.+.++++.+..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999987653
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=2.2e-17 Score=163.40 Aligned_cols=351 Identities=11% Similarity=-0.011 Sum_probs=235.3
Q ss_pred CCCHhHHHHhhcccCC-CCcchHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHccc----CCccc
Q 045069 152 LSLIDEAIKVFDGVSD-PDLVLCNSMISGFAH----CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWE----PSLLS 222 (554)
Q Consensus 152 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~ 222 (554)
.+++++|+..|++..+ .+...+..+...|.. .+++++|.+.|++..+.| +...+..+-..+.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 3444444444433322 233333344444444 444444444444444332 22223333333333 34444
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHh----cCChhhHHHHHhhc-CCCChhhHHHHHHHHHh----cCCHHHHHHH
Q 045069 223 VGQGIHGFCLKSSFDSYDYVSSVLVSMYAR----CNCMNSAYHVFNSL-FHPDLVTWSALITGYSQ----QGDYGKALYY 293 (554)
Q Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 293 (554)
+|...++...+.| +...+..|...|.. .++.++|.+.|++. ...+...+..+...|.. .+++++|...
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 5555554444433 23344455555555 56777777777665 22456667777777776 7888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhc----cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc----cCChHHHHHHHh
Q 045069 294 FRKLNMQGKKADPVLIASVLAAAAK----SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK----CGYLGLGIQVFE 365 (554)
Q Consensus 294 ~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 365 (554)
|++..+.| +...+..+...+.. .++.++|..+++...+.+ +...+..+..+|.. .++.++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 88877764 45566666666664 677888888888877665 34455566666766 788999999998
Q ss_pred ccCC-CCcchHHHHHHHHHcC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---chHHHHHHHHHhHHH
Q 045069 366 TMSE-RNIITYNSVILGLGLH-----GFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG---LVNDGREIFTRMTEE 436 (554)
Q Consensus 366 ~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~ 436 (554)
...+ .+...+..+...|... +++++|+..|++..+.| +...+..+...+...| ++++|.++|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 7764 4556777777788776 89999999999998865 4566777777777656 789999999999873
Q ss_pred hCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC-
Q 045069 437 YGIQAKTEHYIYMVKLLGL----AGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPR- 507 (554)
Q Consensus 437 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~- 507 (554)
.++..+..+...|.. .+++++|.+++++.....++..+..+...|.. .++.++|...|+++.+..|+
T Consensus 361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 457788888998888 89999999999987666678888889999888 89999999999999999854
Q ss_pred --CchhHHHHHHHHHc
Q 045069 508 --KGAYKVMLSNTYAE 521 (554)
Q Consensus 508 --~~~~~~~l~~~~~~ 521 (554)
++.....++.++..
T Consensus 437 ~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 437 FGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHTTSCHH
T ss_pred cCCHHHHHHHHhcCHh
Confidence 67777777655543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=6.9e-19 Score=167.70 Aligned_cols=282 Identities=11% Similarity=-0.011 Sum_probs=224.2
Q ss_pred HHhcCChhhHHH-HHhhcCC-----C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 045069 250 YARCNCMNSAYH-VFNSLFH-----P--DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 250 ~~~~~~~~~a~~-~~~~~~~-----~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 321 (554)
+...|++++|.+ .+++... | +...+..+...+.+.|++++|...++++.+.. +.+...+..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 7775521 1 34567788888999999999999999988764 4466788888888999999
Q ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc-chHHH---------------HHHHHH
Q 045069 322 VWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI-ITYNS---------------VILGLG 383 (554)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~---------------l~~~~~ 383 (554)
++.|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ |+. ..+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999988876 45677888899999999999999999987663 222 22211 233334
Q ss_pred cCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPD---ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (554)
..|++++|...++++.+. .|+ ..++..+...+...|++++|...++++.+. .+.+..++..++..+...|+++
T Consensus 193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence 889999999999999984 444 778999999999999999999999999884 4556789999999999999999
Q ss_pred HHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----------chhHHHHHHHHHccCChhH
Q 045069 461 EAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK-----------GAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 461 ~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~ 527 (554)
+|.+.++++. .+.+...+..++.++...|++++|...++++++..|++ ...+..++.+|...|++++
T Consensus 269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 9999999864 36678899999999999999999999999999998877 7899999999999999999
Q ss_pred HHHHHHHHhh
Q 045069 528 VMKLRDDIVD 537 (554)
Q Consensus 528 A~~~~~~~~~ 537 (554)
|..++++.++
T Consensus 349 A~~~~~~~l~ 358 (368)
T 1fch_A 349 YGAADARDLS 358 (368)
T ss_dssp HHHHHTTCHH
T ss_pred HHHhHHHHHH
Confidence 9999876543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=8.4e-18 Score=156.31 Aligned_cols=345 Identities=10% Similarity=0.030 Sum_probs=116.0
Q ss_pred HhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHH
Q 045069 49 ALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHG 128 (554)
Q Consensus 49 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 128 (554)
-+.|++++|.+++++++.|+ +|..+..++.+.|++++|++.|.+. +|..+|..++..+...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36677899999999886654 7889999999999999999988652 577788888888888999999999777
Q ss_pred HHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhH
Q 045069 129 GAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTL 208 (554)
Q Consensus 129 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 208 (554)
..++. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77664 34577788889999999999998888864 67778888888888888888888888865 245
Q ss_pred HHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHH
Q 045069 209 VGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYG 288 (554)
Q Consensus 209 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 288 (554)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--------------------- 204 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV--------------------- 204 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---------------------
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---------------------
Confidence 55555555555555544444433 133444444444444444444443333322
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc--cCChHHHHHHHhc
Q 045069 289 KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK--CGYLGLGIQVFET 366 (554)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 366 (554)
..+.....++..|.+.|.++++..+++...... +.....|+-+..+|++ .++..+.++.|..
T Consensus 205 ---------------~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 205 ---------------VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred ---------------hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 222223334444444444444444444444322 2233444444444443 3444555555543
Q ss_pred cCC--------CCcchHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHh
Q 045069 367 MSE--------RNIITYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY 437 (554)
Q Consensus 367 ~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 437 (554)
-.. .+...|..+...|.+.++++.|... |.+. ...-+...|.-++ .+..+.+--.+...-..+
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~---~kv~n~elyYkai~fyl~-- 340 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYLE-- 340 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHH---HHCSSTHHHHHHHHHHHH--
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHH---hchhHHHHHHHHHHHHHh--
Confidence 332 2456788888888888888887763 3442 1112233333333 333333322222222212
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
..| ...+.|+.++...=+...+.+++++.
T Consensus 341 -~~p--~~l~~ll~~l~~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 341 -FKP--LLLNDLLMVLSPRLDHTRAVNYFSKV 369 (449)
T ss_dssp -HCG--GGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred -cCH--HHHHHHHHHHHhccCcHHHHHHHHHc
Confidence 122 23555555665555666666666554
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1.8e-16 Score=158.62 Aligned_cols=423 Identities=9% Similarity=0.015 Sum_probs=274.1
Q ss_pred HHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC--CC
Q 045069 92 FKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD--PD 169 (554)
Q Consensus 92 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 169 (554)
|+...+.. +-+...|..++.. .+.|+++.|..+++.+.+.. +.+...|..++..+.+.|++++|..+|++... |+
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~ 78 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH 78 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence 34444442 2255677777774 66788888888888887754 33667788888888888888888888888766 66
Q ss_pred cchHHHHHHHH-HhCCChhhHHH----HHHHHHH-CCCCCC-hhhHHHHHHHccc---------CCccchhhHHHHHHHH
Q 045069 170 LVLCNSMISGF-AHCGFWDKSLQ----LFDWMLR-LGKTPD-EYTLVGLISGLWE---------PSLLSVGQGIHGFCLK 233 (554)
Q Consensus 170 ~~~~~~li~~~-~~~~~~~~a~~----~~~~m~~-~~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 233 (554)
+..|...+... ...|+.+.|.+ +|++... .|..|+ ...|...+..... .|+++.|..+++..++
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66666665422 34567776655 5555443 244433 2333333332211 3455555555555554
Q ss_pred hcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH------hCC---CCC
Q 045069 234 SSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLN------MQG---KKA 304 (554)
Q Consensus 234 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~------~~~---~~~ 304 (554)
.........|..........|. .+...++. .+.+++..|..++.++. +.. +.|
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~----------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI----------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH----------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch----------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 1111111122211111000000 00000110 12345666766666532 111 234
Q ss_pred CH--------HHHHHHHHHHhcc----CCc----chhHHHHHHHHHhcCCchHHHHHHHHHHHHc-------cCChH---
Q 045069 305 DP--------VLIASVLAAAAKS----ANV----WPGAVIHGYVIQHGFELSVMVSSALVDMYSK-------CGYLG--- 358 (554)
Q Consensus 305 ~~--------~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~--- 358 (554)
+. ..|...+...... ++. ..+..+|++..... +.+...|..++..+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 31 2344333322211 222 25667888887764 4567788888887775 68887
Q ss_pred ----HHHHHHhccCC---C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCchHHHHH
Q 045069 359 ----LGIQVFETMSE---R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE--STFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 359 ----~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~ 428 (554)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++++ ..|+. ..|..++..+.+.|++++|..
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 89999998763 4 456888899999999999999999999999 56653 478888888889999999999
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 429 IFTRMTEEYGIQAKTEHYIYMVKL-LGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
+|++..+. .+.+...+...+.. +...|+.++|.++|++.. .+.++..|..++..+.+.|+.++|..+|++++...
T Consensus 378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 99999763 22334444433332 346899999999999864 25678899999999999999999999999999987
Q ss_pred CCCch----hHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 506 PRKGA----YKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 506 p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
|.++. ++...+......|+.+.+.++.+++.+.-+
T Consensus 456 ~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 76665 777778888889999999999999987654
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=8.8e-19 Score=162.83 Aligned_cols=374 Identities=12% Similarity=0.093 Sum_probs=132.9
Q ss_pred cCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHH
Q 045069 116 ENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDW 195 (554)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 195 (554)
+.|++++|.++++.+ +++.+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456677777777666 22347777777777777777777777543 4555777777777777777777776655
Q ss_pred HHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHH
Q 045069 196 MLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWS 275 (554)
Q Consensus 196 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 275 (554)
.++. .+++.+.+.++.++.+.|++..+.++++ .|+..++..+.+.|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHH
Confidence 5442 3445666667777777777776666653 245557777777777777777777777665 3567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
.++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... +...+.....++..|.+.|
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRG 221 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCC
Confidence 7777777777777777777766 2566677777777777777766443332 1122222345666677777
Q ss_pred ChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCC------CHHHHHHHHHHHhcCCchHH
Q 045069 356 YLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNP------DESTFSALLCACCHGGLVND 425 (554)
Q Consensus 356 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p------~~~~~~~ll~~~~~~~~~~~ 425 (554)
++++|..+++.... .....|+-|.-.|++-+ +++..+.++..... .++| +...|.-+...|...++++.
T Consensus 222 ~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~-p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 222 YFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 77777777666553 23345555655555542 33333333322221 1111 12235555555666666666
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH---HHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045069 426 GREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE---EAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLF 502 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (554)
|....-+- +|+..-....-+...+..+.+ +|+.++- ...|..++.|+.++...=|...+..++++.-
T Consensus 301 A~~tm~~h------~~~a~~~~~f~~~~~kv~n~elyYkai~fyl----~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 301 AIITMMNH------PTDAWKEGQFKDIITKVANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HHHHHHHS------TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH----HHCGGGHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HHHHHHhC------ChhhhhhHHHHHHHhchhHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 55432221 111111111111111222111 1222211 1122334444444444444444444444321
Q ss_pred hc-----------CCCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 503 EN-----------DPRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 503 ~~-----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.. .-++..+...|-++|...++++.=+.-++
T Consensus 371 ~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 371 QLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp CTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 11 34566777778888888888776555444
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=1.9e-15 Score=156.77 Aligned_cols=449 Identities=14% Similarity=0.086 Sum_probs=310.1
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHH---------
Q 045069 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKN--------- 94 (554)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--------- 94 (554)
...+.....| ..++.++|+|.+.|...++-. .+++.+-+ .-=..++.-||...|+..|.-.|++
T Consensus 860 p~LE~~~~~g-~~~~~~hnalakiyid~n~np--e~fL~~n~----~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~ 932 (1630)
T 1xi4_A 860 PWLEARIHEG-CEEPATHNALAKIYIDSNNNP--ERFLRENP----YYDSRVVGKYCEKRDPHLACVAYERGQCDLELIN 932 (1630)
T ss_pred HHHHHHHhCC-CCCHHHHHHHHHHHhccCCCH--HHHhhccC----cccHHHHHHHHHhcCcchHHHHhcccCCcHHHHH
Confidence 3344444445 578999999999999877432 33333211 1112233334444444443333332
Q ss_pred --------------hHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcC--CCCHhHHHHHHHHHHcCCCHhHH
Q 045069 95 --------------LLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGL--GRDSITSSALVTAYSKLSLIDEA 158 (554)
Q Consensus 95 --------------m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 158 (554)
+.++ -|...|..++.- +-+-=+++.++.....+ ..++.-....+.+|...|.+.+|
T Consensus 933 vt~~n~l~k~~arylv~r---~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~Ea 1004 (1630)
T 1xi4_A 933 VCNENSLFKSLSRYLVRR---KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNEL 1004 (1630)
T ss_pred HHhcchhHHHHHHHHHHh---cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHH
Confidence 1111 133344443311 11112233344333221 22444455678888899999999
Q ss_pred HHhhcccCC-CC-----cchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHH
Q 045069 159 IKVFDGVSD-PD-----LVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCL 232 (554)
Q Consensus 159 ~~~~~~~~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 232 (554)
++++++..- |+ ...-+.++.+..+. +..+..++..+.... + ...+...+...|.+++|..+|+...
T Consensus 1005 ieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1005 IELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 999988763 22 24456677766666 556666666665421 1 3336667788999999999998752
Q ss_pred HhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 045069 233 KSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASV 312 (554)
Q Consensus 233 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 312 (554)
......+.+ +...+++++|.++.+++. ++.+|..+..++...|++++|...|.+. -|...|..+
T Consensus 1077 -----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eV 1140 (1630)
T 1xi4_A 1077 -----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEV 1140 (1630)
T ss_pred -----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHH
Confidence 111111222 337788999999998774 4678889999999999999999999663 567788889
Q ss_pred HHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHH
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAF 392 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 392 (554)
+.++.+.|+++++.+++....+.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|++++|.
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999877765 33333345888999999988655443 3566677788899999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 045069 393 EFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP 472 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 472 (554)
.+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+..++...|++..|......+ .
T Consensus 1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~I--i 1277 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--V 1277 (1630)
T ss_pred HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh--h
Confidence 999885 37889999999999999999999877 34578888999999999999999877653 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc--cCChhHHHHHHHH
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE--DGRWDDVMKLRDD 534 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 534 (554)
.++..+..++..|.+.|.+++|+.+++.++..+|.+...+..|+.+|.+ -++..++.++|..
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999988888888777765 3556666666553
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=4.8e-15 Score=153.79 Aligned_cols=441 Identities=10% Similarity=0.033 Sum_probs=289.3
Q ss_pred CCChhHHHHHHHHHHhcCCchhHHHHhccCC-CC-----CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHH
Q 045069 35 LRDPFYATKLVRLYALNNVLPSARILFDKTP-QR-----SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYA 108 (554)
Q Consensus 35 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 108 (554)
..+|.--+..+++|...|.+.+|+++++++. .| +....|.++....+. +..+..+..+..... ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHH
Confidence 3455555667777778888888888887765 22 224556666666665 445555555544321 133
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhh
Q 045069 109 CITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDK 188 (554)
Q Consensus 109 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 188 (554)
.+...+...|.+++|..+|+... ......+.++. ..+++++|.++.++.. +..+|..+..++...|++++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHH
Confidence 46667777888888888887742 11222222322 5677888888887664 45677788888888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCC
Q 045069 189 SLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFH 268 (554)
Q Consensus 189 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 268 (554)
|++.|.+. -|...|..++.++.+.|+++++.+.+....+.. +++.+.+.++.+|++.++++...... ..
T Consensus 1124 AIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~ 1192 (1630)
T 1xi4_A 1124 AIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NG 1192 (1630)
T ss_pred HHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hC
Confidence 88888653 466777888888888888888888888777765 33333445888888888887544443 34
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHH
Q 045069 269 PDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALV 348 (554)
Q Consensus 269 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 348 (554)
++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++. .+..+|..+.
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence 56666777888888888888888888874 37888888888888888888888765 3457788888
Q ss_pred HHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhc--CCchHH
Q 045069 349 DMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCH--GGLVND 425 (554)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~--~~~~~~ 425 (554)
.+|...|++..|...... ...+...+..++..|.+.|.+++|+.+++..+. +.|... .|.-+...+++ .++..+
T Consensus 1258 ~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 888888888888877664 334455666888888888888888888877765 333332 45445555544 344445
Q ss_pred HHHHHHHhHHHhCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhC--------------CCCCChhhHHHHHHHH
Q 045069 426 GREIFTRMTEEYGIQA------KTEHYIYMVKLLGLAGNLEEAYSFIWSL--------------PKPVDPAVSGALLSCC 485 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------------~~~~~~~~~~~l~~~~ 485 (554)
+.+.|.. +.+++| +...|..++..|.+.|+++.|....-+- ....++..+...+..|
T Consensus 1335 hlk~f~~---rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fy 1411 (1630)
T 1xi4_A 1335 HLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 1411 (1630)
T ss_pred HHHHHHH---hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHH
Confidence 5555443 223444 4667888888888888888888433222 1344566666655555
Q ss_pred HhcC---------------ChHHHHHHHHHHHhc-----------CCCCchhHHHHHHHHHccCCh
Q 045069 486 HIYG---------------NSDLAEIVAHQLFEN-----------DPRKGAYKVMLSNTYAEDGRW 525 (554)
Q Consensus 486 ~~~~---------------~~~~A~~~~~~~~~~-----------~p~~~~~~~~l~~~~~~~g~~ 525 (554)
.... |.+++.+++.+.-.. .-++..+...+.+.|...+++
T Consensus 1412 l~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~ 1477 (1630)
T 1xi4_A 1412 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY 1477 (1630)
T ss_pred HhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccch
Confidence 5544 566665555521100 234445555566666655554
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.81 E-value=3.2e-16 Score=155.10 Aligned_cols=352 Identities=14% Similarity=0.033 Sum_probs=292.7
Q ss_pred CCcchHHHHHHHHHh----CCChhhHHHHHHHHHHCCCCCChhhHHHHHHHccc----CCccchhhHHHHHHHHhcCCCc
Q 045069 168 PDLVLCNSMISGFAH----CGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWE----PSLLSVGQGIHGFCLKSSFDSY 239 (554)
Q Consensus 168 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 239 (554)
.++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 455566666677776 899999999999998764 45566667666766 889999999999988875 5
Q ss_pred hhHHHHHHHHHHh----cCChhhHHHHHhhcC-CCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 045069 240 DYVSSVLVSMYAR----CNCMNSAYHVFNSLF-HPDLVTWSALITGYSQ----QGDYGKALYYFRKLNMQGKKADPVLIA 310 (554)
Q Consensus 240 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~ 310 (554)
...+..|...|.. .+++++|...|++.. ..++..+..+...|.. .+++++|...|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667778888888 789999999999873 3467778888888887 789999999999998875 667777
Q ss_pred HHHHHHhc----cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHc----cCChHHHHHHHhccCC-CCcchHHHHHHH
Q 045069 311 SVLAAAAK----SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSK----CGYLGLGIQVFETMSE-RNIITYNSVILG 381 (554)
Q Consensus 311 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~ 381 (554)
.+...+.. .++.++|...++...+.+ +...+..+...|.. .+++++|..+|+...+ .+...+..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78888877 899999999999998876 45567777777876 7899999999998764 556677778888
Q ss_pred HHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-----CchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 382 LGL----HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHG-----GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 382 ~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
|.. .+++++|+..|++..+.| +...+..+...+... +++++|...|++..+. + +...+..+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 877 899999999999998864 556777777777776 8999999999999874 3 45677888888
Q ss_pred HHhcC---ChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----
Q 045069 453 LGLAG---NLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE---- 521 (554)
Q Consensus 453 ~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 521 (554)
|...| +.++|++++++.....++..+..+...|.. .+++++|...++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88766 889999999997666788999999999998 899999999999999864 57889999999998
Q ss_pred cCChhHHHHHHHHHhhcCC
Q 045069 522 DGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 522 ~g~~~~A~~~~~~~~~~~~ 540 (554)
.+++++|.+.+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999998774
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=2.5e-18 Score=163.55 Aligned_cols=262 Identities=11% Similarity=-0.057 Sum_probs=213.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
+...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44568888888899999999999999888764 3467788888888999999999999999888875 445778888999
Q ss_pred HHHccCChHHHHHHHhccCC--CC-----------cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 045069 350 MYSKCGYLGLGIQVFETMSE--RN-----------IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN-PDESTFSALLC 415 (554)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 415 (554)
+|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988763 21 223345678899999999999999999995322 15778999999
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHH
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
.+...|++++|...++++.+. .+.+..++..++.+|...|++++|++.++++. .+.+..++..+..++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999884 45668899999999999999999999999864 35678899999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 494 AEIVAHQLFENDPR------------KGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 494 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
|...++++++..|+ +..++..++.++...|+.+.|.++.++-
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999999999766 4678999999999999999999887763
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=8.6e-17 Score=146.69 Aligned_cols=270 Identities=10% Similarity=0.012 Sum_probs=212.5
Q ss_pred HHHHhcCChhhHHHHHhhcCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcc
Q 045069 248 SMYARCNCMNSAYHVFNSLFHPDL----VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVW 323 (554)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 323 (554)
+-....|++..|+..++.....++ .....+..+|...|+++.|+..++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 345567888888888887644332 3445677889999999998876654 23566678888888888889999
Q ss_pred hhHHHHHHHHHhcCCc-hHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcC
Q 045069 324 PGAVIHGYVIQHGFEL-SVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKG 402 (554)
Q Consensus 324 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g 402 (554)
.|.+.++.+...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999988876434 566677778899999999999999998 556778889999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhh
Q 045069 403 LNPDESTF---SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAV 477 (554)
Q Consensus 403 ~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 477 (554)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.++++. .+.++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4664321 22334455679999999999999984 66788899999999999999999999999864 4678889
Q ss_pred HHHHHHHHHhcCChHH-HHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHH
Q 045069 478 SGALLSCCHIYGNSDL-AEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
+..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 9999999999999876 67899999999999987654 34445555555443
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=1.6e-17 Score=155.26 Aligned_cols=261 Identities=9% Similarity=-0.095 Sum_probs=194.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHH
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMY 351 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 351 (554)
..+..+...+...|++++|..+++++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 334455555666666666666666665542 2244455555566666666666666666665553 33455666666667
Q ss_pred HccCChHHHHHHHhccCC--CC-cchHHHH--------------HH-HHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045069 352 SKCGYLGLGIQVFETMSE--RN-IITYNSV--------------IL-GLGLHGFTYQAFEFFRDIIEKGLNPDESTFSAL 413 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 413 (554)
...|++++|.+.++++.+ |+ ...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777776666542 21 2222222 22 3677889999999999999853 3367789999
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNS 491 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 491 (554)
...+...|++++|...++++.+. .+.+..++..++..+...|++++|.+.++++. .+.+...+..+..++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999884 45567889999999999999999999999864 356788899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 492 DLAEIVAHQLFENDPR------------KGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++|...++++.+..|. ++..+..++.++.+.|++++|.+++++.++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999998 788999999999999999999999987654
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=6.3e-16 Score=154.58 Aligned_cols=407 Identities=9% Similarity=0.009 Sum_probs=280.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHH
Q 045069 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALV 146 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 146 (554)
.+..+|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+++.|..+|+.++... |+...|...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 36778999998 47899999999999999986 33356678999999999999999999999998764 5777777766
Q ss_pred HH-HHcCCCHhHHHH----hhcccCC------CCcchHHHHHHHHHh---------CCChhhHHHHHHHHHHCCCCCCh-
Q 045069 147 TA-YSKLSLIDEAIK----VFDGVSD------PDLVLCNSMISGFAH---------CGFWDKSLQLFDWMLRLGKTPDE- 205 (554)
Q Consensus 147 ~~-~~~~g~~~~A~~----~~~~~~~------~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~- 205 (554)
.. ....|+.+.|.+ +|+.... ++...|...+....+ .|+++.|..+|++.... |+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 53 335677777665 6655421 345677777776554 68899999999998873 332
Q ss_pred --hhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhh----------c---CCCC
Q 045069 206 --YTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNS----------L---FHPD 270 (554)
Q Consensus 206 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----------~---~~~~ 270 (554)
..|..........+. ..+ ..++. ...++++.|..++.. . ..|+
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~ 221 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ 221 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCC
Confidence 222221110000000 000 00110 012233444433332 1 1222
Q ss_pred --------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------cCCcc----
Q 045069 271 --------LVTWSALITGYSQQ----GDY----GKALYYFRKLNMQGKKADPVLIASVLAAAAK-------SANVW---- 323 (554)
Q Consensus 271 --------~~~~~~l~~~~~~~----g~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~g~~~---- 323 (554)
...|...+...... ++. .++..+|++..... +-+...|......+.. .|+++
T Consensus 222 ~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~ 300 (530)
T 2ooe_A 222 NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 300 (530)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhh
Confidence 23455544332222 232 37777888887652 3456667766666664 68887
Q ss_pred ---hhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCc--chHHHHHHHHHcCCChHHHHHHHH
Q 045069 324 ---PGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI--ITYNSVILGLGLHGFTYQAFEFFR 396 (554)
Q Consensus 324 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~ 396 (554)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+. ..|...+..+.+.|++++|..+|+
T Consensus 301 ~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 301 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7888888887632345678888999999999999999999998763 432 478888888888999999999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHH-HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--C
Q 045069 397 DIIEKGLNPD-ESTFSALLCA-CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--P 472 (554)
Q Consensus 397 ~m~~~g~~p~-~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~ 472 (554)
+..+. .|+ ...|...... +...|++++|..+|++..+. .+.+...+..++..+.+.|+.++|..+|++... +
T Consensus 381 ~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99884 333 3333332222 33689999999999999885 345678899999999999999999999998642 2
Q ss_pred CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 473 VD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 473 ~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
.+ ...|...+......|+.+.+..+.+++.+..|+
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 22 337778888888899999999999999999874
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.3e-16 Score=157.58 Aligned_cols=385 Identities=8% Similarity=-0.050 Sum_probs=198.1
Q ss_pred CHhHHHHHHHHHHcCCCHhHHHHhhcccCC-----------C-CcchHHHHHHHHHhCCChhhHHHHHHHHHHC-----C
Q 045069 138 DSITSSALVTAYSKLSLIDEAIKVFDGVSD-----------P-DLVLCNSMISGFAHCGFWDKSLQLFDWMLRL-----G 200 (554)
Q Consensus 138 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~ 200 (554)
....|+.|...+...|+.++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 456788888888888999888888865421 2 3456788888888888888888888876542 0
Q ss_pred -CCCC-hhhHHHHHHHcc--cCCccchhhHHHHHHHHhcCCCchhHHHHHHHH---HHhcCChhhHHHHHhhc---CCCC
Q 045069 201 -KTPD-EYTLVGLISGLW--EPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSM---YARCNCMNSAYHVFNSL---FHPD 270 (554)
Q Consensus 201 -~~p~-~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~---~~~~ 270 (554)
..++ ..++.....++. ..+++++|...|+...+..+. ++..+..+..+ +...++.++|++.+++. .+.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 0111 223333322222 234566666666665554422 22223222222 23344555555555443 2223
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHH
Q 045069 271 LVTWSALITGYSQ----QGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSA 346 (554)
Q Consensus 271 ~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (554)
..++..+...+.. .|++++|...+++..... +.+...+..+...+...|+++.|...++...+.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 3344333333322 234455555555554432 2233444555555555555555555555555443 223334444
Q ss_pred HHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHH
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVND 425 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~ 425 (554)
+..+|...+....+. . .. .........+.++.|...+++..+. .|+ ..++..+...+...|++++
T Consensus 287 lg~~y~~~~~~~~~~-----~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~ 352 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNL-----R-EN------GMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEE 352 (472)
T ss_dssp HHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhhH-----H-HH------HHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHH
Confidence 443332211100000 0 00 0000001122356778888887773 343 3467778888889999999
Q ss_pred HHHHHHHhHHHhCCCCCh--hHHHHHHHH-HHhcCChHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 426 GREIFTRMTEEYGIQAKT--EHYIYMVKL-LGLAGNLEEAYSFIWSLP-KPVDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
|...|++..+. ..++.. ..+..+... +...|+.++|++.+++.. ..|+..... +....+..++++.
T Consensus 353 A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~ 422 (472)
T 4g1t_A 353 AEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMR 422 (472)
T ss_dssp HHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHH
Confidence 99999888763 322221 123333332 346788999998887753 233322221 2234566778888
Q ss_pred HhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCCeeee
Q 045069 502 FENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAGVSWV 549 (554)
Q Consensus 502 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~ 549 (554)
++.+|+++.++..|+.+|...|++++|++.|+++++.+...+...+|+
T Consensus 423 l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 423 LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 889999999999999999999999999999999999888777777775
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=6e-17 Score=154.23 Aligned_cols=261 Identities=12% Similarity=-0.023 Sum_probs=128.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHH
Q 045069 69 VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTA 148 (554)
Q Consensus 69 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 148 (554)
...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+..+ .+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3445555555566666666666666655542 22344555555555555555555555555555432 234444444455
Q ss_pred HHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChh-hHHH---------------HH
Q 045069 149 YSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEY-TLVG---------------LI 212 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~---------------ll 212 (554)
+...|++++|+..| +++.... |+.. .+.. .+
T Consensus 142 ~~~~g~~~~A~~~~-------------------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 142 FTNESLQRQACEIL-------------------------------RDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp HHHTTCHHHHHHHH-------------------------------HHHHHTS--TTTGGGCC---------------CTT
T ss_pred HHHcCCHHHHHHHH-------------------------------HHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHH
Confidence 55555555555444 4444321 1111 0000 11
Q ss_pred HHcccCCccchhhHHHHHHHHhcCCC-chhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHH
Q 045069 213 SGLWEPSLLSVGQGIHGFCLKSSFDS-YDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYG 288 (554)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 288 (554)
..+...|+++.|...++.+.+..... +..++..+...|...|++++|...|++. .+.+..+|..+...+...|+++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHH
Confidence 11113444444444444444433221 3444555555555555555555555554 2234455556666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc----------hHHHHHHHHHHHHccCChH
Q 045069 289 KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL----------SVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 289 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~ 358 (554)
+|...++++.+.. +.+...+..+..++...|++++|...++.+.+..... ...+|..+..+|...|+.+
T Consensus 269 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 269 EAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 6666666655432 2234455555555555666666666555554432111 1345555555555556555
Q ss_pred HHHHHHh
Q 045069 359 LGIQVFE 365 (554)
Q Consensus 359 ~A~~~~~ 365 (554)
+|..+++
T Consensus 348 ~A~~~~~ 354 (368)
T 1fch_A 348 AYGAADA 354 (368)
T ss_dssp GHHHHHT
T ss_pred hHHHhHH
Confidence 5555544
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=5.9e-17 Score=147.78 Aligned_cols=248 Identities=8% Similarity=-0.012 Sum_probs=204.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccC
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGKKADP--VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCG 355 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 355 (554)
++-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999998876433 3443 3556678899999999999876654 24678889999999999999
Q ss_pred ChHHHHHHHhccC----CCC-cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 045069 356 YLGLGIQVFETMS----ERN-IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 356 ~~~~A~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 430 (554)
+.++|++.++++. .|+ ...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 254 44666777899999999999999987 456778999999999999999999999
Q ss_pred HHhHHHhCCCCChhHH---HHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 431 TRMTEEYGIQAKTEHY---IYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
+++.+. .|+.... ..++..+...|++++|..+|+++. .+.++..+..+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999884 3554322 223445556699999999999975 47788899999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHccCChhH-HHHHHHHHhhcCC
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDD-VMKLRDDIVDNGL 540 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 540 (554)
|+++.++..++.++...|+.++ +.++++++++..+
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999976 5789999987664
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=6.6e-17 Score=153.75 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=197.1
Q ss_pred CHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHH
Q 045069 305 DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILG 381 (554)
Q Consensus 305 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 381 (554)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+ .+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999876 55788899999999999999999999998763 456789999999
Q ss_pred HHcCCChHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEKGLNPDES-----------TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMV 450 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 450 (554)
|...|++++|...++++.+. .|+.. .+..+...+...|++++|...++++.+.....++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999983 34432 233457788999999999999999988521112688999999
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 528 (554)
..|...|++++|++.++++. .+.+..++..++.++...|++++|+..++++++..|+++..+..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999864 3667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCC
Q 045069 529 MKLRDDIVDNGL 540 (554)
Q Consensus 529 ~~~~~~~~~~~~ 540 (554)
.+.++++++..+
T Consensus 301 ~~~~~~al~~~~ 312 (365)
T 4eqf_A 301 VSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc
Confidence 999999987543
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=5.8e-15 Score=145.63 Aligned_cols=299 Identities=9% Similarity=-0.035 Sum_probs=167.7
Q ss_pred CChhhHHHHHHHHHHCCCCCChh-hHHHHHHH---cccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHH----hcCC
Q 045069 184 GFWDKSLQLFDWMLRLGKTPDEY-TLVGLISG---LWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYA----RCNC 255 (554)
Q Consensus 184 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 255 (554)
+++++|++.|++..+. .|+.. .+..+... +...++.+.|.+.++...+... .+..++..+...+. ..|+
T Consensus 152 ~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhH
Confidence 4567777777776654 34332 22222222 3345666677777776666542 23444444444444 4567
Q ss_pred hhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHH
Q 045069 256 MNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYV 332 (554)
Q Consensus 256 ~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 332 (554)
.++|.+.+++. .+.+..++..+...|...|++++|...+++..+.. +-+...+..+..++...+.. .
T Consensus 229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~---------~ 298 (472)
T 4g1t_A 229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQ---------V 298 (472)
T ss_dssp -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHH---------H
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHH---------h
Confidence 88999999876 44667789999999999999999999999998763 22444555555444321100 0
Q ss_pred HHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccC---CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-
Q 045069 333 IQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMS---ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDES- 408 (554)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~- 408 (554)
... ............+..+.|...|+... ..+..++..+...+...|++++|+..|++..+. .|+..
T Consensus 299 ~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~ 369 (472)
T 4g1t_A 299 MNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVA 369 (472)
T ss_dssp HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHH
T ss_pred hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChH
Confidence 000 00001111112233566777777654 345678899999999999999999999999984 44433
Q ss_pred ---HHHHHHH-HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHH
Q 045069 409 ---TFSALLC-ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALL 482 (554)
Q Consensus 409 ---~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~ 482 (554)
.+..+.. .....|++++|+..|++..+ +.|+........ ..+.++++... .+.++.+|..++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2222322 24578999999999999876 556543332222 22333343321 366788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
.++...|++++|++.|+++++..|.+|.....++
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 9999999999999999999999988887766554
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=4.6e-18 Score=170.63 Aligned_cols=147 Identities=15% Similarity=0.177 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHhcCCchhHHHHhccCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHH
Q 045069 38 PFYATKLVRLYALNNVLPSARILFDKTP-------QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACI 110 (554)
Q Consensus 38 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 110 (554)
-.+||+||++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3579999999999999999999997643 799999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCh-hhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC-----CCcchHHHHHHHHHhCC
Q 045069 111 TRACSENSDL-PGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD-----PDLVLCNSMISGFAHCG 184 (554)
Q Consensus 111 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~ 184 (554)
|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++...++...+.. +.+.+...|.+.|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 78999999999999999999999999888777666666666555443 22344555666666655
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1e-15 Score=137.62 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=148.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDM 350 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (554)
...|..+...+...|++++|...+++..+.. .+...+..+..++...|++++|...++...+......
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------- 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR---------- 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc----------
Confidence 3456666666777777777777777766655 5555555566666666666666666655544321000
Q ss_pred HHccCChHHHHHHHhccCCCC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHH
Q 045069 351 YSKCGYLGLGIQVFETMSERN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDG 426 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 426 (554)
++ ...+..+...+...|++++|...++++.+ ..|+.. .+...|++++|
T Consensus 73 -------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a 124 (258)
T 3uq3_A 73 -------------------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKE 124 (258)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHH
Confidence 01 23455555666666666666666666666 334432 34445667777
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...++++.. ..+.+...+..++..+...|++++|.+.++++. .+.+...+..++.++...|++++|...++++++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777665 233345666677777777777777777777653 3456677777777788888888888888888888
Q ss_pred CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 505 DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 505 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.|+++..+..++.++...|++++|.+.++++.+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888877654
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=7.9e-15 Score=136.92 Aligned_cols=275 Identities=10% Similarity=-0.055 Sum_probs=172.5
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHH
Q 045069 68 SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVT 147 (554)
Q Consensus 68 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 147 (554)
+...+..+...+...|++++|+.+|+++.+.. +.+...+..+...+...|++++|...++.+.+... .+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHH
Confidence 44556677777788888888888888877753 22555666777777777777777777777776642 24555666666
Q ss_pred HHHcCCCHhHHHHhhcccCC--CC-cchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHH-HH-HcccCCccc
Q 045069 148 AYSKLSLIDEAIKVFDGVSD--PD-LVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGL-IS-GLWEPSLLS 222 (554)
Q Consensus 148 ~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~-~~~~~~~~~ 222 (554)
.+...|++++|++.+++..+ |+ ...+..+... .|+......+ .. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 66666666666666655433 11 1111111000 0011111111 11 245556666
Q ss_pred hhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 045069 223 VGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNM 299 (554)
Q Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 299 (554)
.|...++.+.+... .+...+..+...|...|++++|.+.+++. .+.+..++..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666665542 24566667777777777777777777766 334566777778888888888888888887766
Q ss_pred CCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHccCChHHHHHHHhccC
Q 045069 300 QGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL-----------SVMVSSALVDMYSKCGYLGLGIQVFETMS 368 (554)
Q Consensus 300 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 368 (554)
.. +.+...+..+..++...|++++|...++.+.+..... +..++..+..++.+.|+.++|..+++...
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 53 3345667777777777888888888877776654331 56677777778888888888887777554
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=5.2e-17 Score=163.14 Aligned_cols=150 Identities=15% Similarity=0.111 Sum_probs=123.9
Q ss_pred CCchhHHHHHHHHHHhcCChhhHHHHHhhc-------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 045069 237 DSYDYVSSVLVSMYARCNCMNSAYHVFNSL-------FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLI 309 (554)
Q Consensus 237 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 309 (554)
..-..+|++||++|++.|++++|.++|+.| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 334568899999999999999999999665 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCc-chhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CCcchHHHHHHHHH
Q 045069 310 ASVLAAAAKSANV-WPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RNIITYNSVILGLG 383 (554)
Q Consensus 310 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~ 383 (554)
+++|.++++.|+. +.|.++|++|.+.|+.||..+|++++..+.+.+-++.+.++...+.- +.+.+...|...|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999986 78999999999999999999999999877776544444444333331 12445556667777
Q ss_pred cCC
Q 045069 384 LHG 386 (554)
Q Consensus 384 ~~~ 386 (554)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 655
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=7.3e-16 Score=134.28 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=155.7
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 045069 338 ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSAL 413 (554)
Q Consensus 338 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l 413 (554)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45667778888889999999999999998764 34567888889999999999999999999984 454 5578888
Q ss_pred HHHHhcC-----------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHH
Q 045069 414 LCACCHG-----------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGA 480 (554)
Q Consensus 414 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~ 480 (554)
...+... |++++|...+++..+. -+.+...+..+..+|...|++++|++.+++.. . .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 8889998 9999999999999883 34457888999999999999999999998863 3 77888999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+..++...|++++|+..++++++.+|+++..+..++.++...|++++|++.+++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999988754
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.68 E-value=1e-14 Score=141.96 Aligned_cols=375 Identities=9% Similarity=-0.010 Sum_probs=196.5
Q ss_pred HhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH---hHHHHhhcccCCCCcchHHHHHHHHHhCC-----
Q 045069 113 ACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI---DEAIKVFDGVSDPDLVLCNSMISGFAHCG----- 184 (554)
Q Consensus 113 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~----- 184 (554)
.+.+.|++++|.++|+...+.|. ...+..|...|...|+. ++|+..|++..+.++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 33444555555555555554441 22222333334444555 56666666555445555555555444443
Q ss_pred ChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhh----HH
Q 045069 185 FWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS----AY 260 (554)
Q Consensus 185 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~ 260 (554)
++++|+..|++..+.|... .+..+...+...+....+...++...+.....+......|...|...+.++. +.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 5667777777776654222 3444444444433333333333222222212234445556666666664433 33
Q ss_pred HHHhhcCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcC
Q 045069 261 HVFNSLFHPDLVTWSALITGYSQQG---DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGF 337 (554)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 337 (554)
.+++.....++..+..|...|...| +.++|+..|++..+.| .++...+
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~---------------------------- 216 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRV---------------------------- 216 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHH----------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHH----------------------------
Confidence 3444445555556667777777777 6777777777666655 2222222
Q ss_pred CchHHHHHHHHHHHHcc----CChHHHHHHHhccCCCCcchHHHHHHH-H--HcCCChHHHHHHHHHHHHcCCCCCHHHH
Q 045069 338 ELSVMVSSALVDMYSKC----GYLGLGIQVFETMSERNIITYNSVILG-L--GLHGFTYQAFEFFRDIIEKGLNPDESTF 410 (554)
Q Consensus 338 ~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 410 (554)
..+..+|... +++++|...|+.....+...+..+... + ...+++++|...|++..+.| +...+
T Consensus 217 -------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~ 286 (452)
T 3e4b_A 217 -------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAE 286 (452)
T ss_dssp -------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred -------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 2333333322 455555555555442233444445444 3 34677788888888877765 55566
Q ss_pred HHHHHHHhcCC-----chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHH
Q 045069 411 SALLCACCHGG-----LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEEAYSFIWSLPKPVDPAVSGAL 481 (554)
Q Consensus 411 ~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l 481 (554)
..+...|. .| ++++|..+|++.. +-++..+..+...|.. ..+.++|.+++++.....++.....|
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~L 360 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAI 360 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHH
Confidence 66666665 34 7888888888774 3456667777777765 34888888888887656666677777
Q ss_pred HHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 482 LSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 482 ~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
...|.. ..+.++|...++++.+..+.........+......++..+|.++.++..+.
T Consensus 361 g~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 361 AQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 777654 457888888888888876544333333322333455777888888777654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=2e-15 Score=135.76 Aligned_cols=234 Identities=11% Similarity=-0.007 Sum_probs=174.6
Q ss_pred hhHHHHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 045069 240 DYVSSVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGK--KAD----PVLIA 310 (554)
Q Consensus 240 ~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~----~~~~~ 310 (554)
...+..+...+...|++++|...|++. . .+...|..+..++...|++++|...+++..+... .++ ...+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 457788899999999999999999887 4 7788999999999999999999999999876421 112 24444
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHH
Q 045069 311 SVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 311 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 390 (554)
.+...+...|++++|...++...+.. |+ ...+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~-------~~~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RT-------ADILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CC-------HHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC---------------------------------ch-------hHHHHHHhHHHH
Confidence 45555555555555555555544432 22 123455566777
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 391 AFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
|...++++.. ..|+. ..+..+...+...|++++|...+++..+. .+.+..++..++..+...|++++|.+.+++.
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888887777 34443 36777788888888888888888888773 4456778888888888888888888888876
Q ss_pred C--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCchhHHHHHHH
Q 045069 470 P--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND------PRKGAYKVMLSNT 518 (554)
Q Consensus 470 ~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~ 518 (554)
. .+.+...+..+..++...|++++|...++++.+.. |++..+...+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 4 35567888888899999999999999999999987 8777777766543
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.66 E-value=6.3e-15 Score=133.87 Aligned_cols=242 Identities=9% Similarity=-0.089 Sum_probs=187.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKK---ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLG 358 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 358 (554)
...|++++|+..++++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3457788888888888765321 134567777778888888888888888887765 446778888888999999999
Q ss_pred HHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 359 LGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 359 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
+|...|++..+ .+...+..+...+...|++++|...++++.+ ..|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999988763 4567888999999999999999999999998 456655555555556777999999999988887
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCC-C-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 436 EYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKP-V-----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 436 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
. .+++...+. ++..+...++.++|.+.+++.... + +...+..++..+...|++++|...++++++.+|++.
T Consensus 173 ~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 K--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp H--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred c--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 4 445555544 677778888899999999886532 2 257788899999999999999999999999999876
Q ss_pred hhHHHHHHHHHccCChhHHHHHH
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLR 532 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~ 532 (554)
..+ +.++...|++++|++.+
T Consensus 250 ~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHH---HHHHHHHHHHHHC----
T ss_pred HHH---HHHHHHHHHHHhhHHHH
Confidence 554 55778889999998876
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=1.2e-13 Score=125.24 Aligned_cols=225 Identities=12% Similarity=-0.049 Sum_probs=148.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----cCCcchhHHHHHHHHHhcCCchHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK----SANVWPGAVIHGYVIQHGFELSVMVSS 345 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (554)
++.++..+...+...|++++|...|++..+. -+...+..+...+.. .+++++|...+++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4556666667777777777777777776652 233344444444444 455555555555444433
Q ss_pred HHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHc----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc--
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGL----HGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH-- 419 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-- 419 (554)
+...+..+...|.. .+++++|+..|++..+.+ +..++..+...|..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 33444445555555 666777777777766653 55666666666666
Q ss_pred --CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cC
Q 045069 420 --GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YG 489 (554)
Q Consensus 420 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 489 (554)
.+++++|...|++..+. + +...+..+...|.. .+++++|.+.+++.....++..+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 77777777777777663 3 45566666677766 77777777777775544556677777777777 78
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHHHHHHHHhhcCC
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 540 (554)
++++|...++++.+..| +..+..++.+|.. .|++++|.+.+++..+.+.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88888888888887755 6677778888887 8888888888888877654
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=9.7e-14 Score=124.20 Aligned_cols=198 Identities=6% Similarity=-0.105 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 417 (554)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 44555666666666666666666665542 344566666777777777777777777777642 22455677777777
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
...|++++|.++++++.+. +..| +...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7778888888777777651 2334 35666777777777788888887777753 244567777777778888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
...++++.+..|.+...+..++.++...|++++|.++++++.+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 8888888888888888888888888888888888888888877653
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=2.1e-14 Score=127.71 Aligned_cols=198 Identities=14% Similarity=0.116 Sum_probs=121.1
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 416 (554)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344455555556666666666666665542 234456666666667777777777777766642 2245566667777
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777663 34456666777777777777777777776653 244566677777777777777777
Q ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 495 EIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
...++++.+..|+++..+..++.+|...|++++|.+.++++.+..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 7777777777777777777777777777777777777777776543
No 45
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=1.1e-13 Score=134.73 Aligned_cols=271 Identities=11% Similarity=-0.034 Sum_probs=189.3
Q ss_pred ChhhHHHHHhhcCC-CChhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHH
Q 045069 255 CMNSAYHVFNSLFH-PDLVTWSALITGYSQQGDYG---KALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHG 330 (554)
Q Consensus 255 ~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 330 (554)
+.++|...|++... .+...+..|...|...+..+ ++.+.+......|. ......+...+...+.++.+.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 44455555555421 23335555555555544322 34444444444442 2344455566666666666666544
Q ss_pred HHHHhcCCchHHHHHHHHHHHHccC---ChHHHHHHHhccCC---CCcchHHHHHHHHHcC----CChHHHHHHHHHHHH
Q 045069 331 YVIQHGFELSVMVSSALVDMYSKCG---YLGLGIQVFETMSE---RNIITYNSVILGLGLH----GFTYQAFEFFRDIIE 400 (554)
Q Consensus 331 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~a~~~~~~m~~ 400 (554)
.+.+.-...++..+..|..+|...| +.++|++.|+...+ ++...+..+...|... +++++|...|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 4444333344447788888888888 88999999987663 3333346677777654 79999999999987
Q ss_pred cCCCCCHHHHHHHHHH-H--hcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC-----ChHHHHHHHHhCCCC
Q 045069 401 KGLNPDESTFSALLCA-C--CHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG-----NLEEAYSFIWSLPKP 472 (554)
Q Consensus 401 ~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~ 472 (554)
.| +...+..+... + ...+++++|..+|++..+. | +...+..+...|. .| ++++|.++|++.. +
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 44455555555 3 5689999999999999874 4 6777888888887 55 9999999999988 8
Q ss_pred CChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc----cCChhHHHHHHHHHhhcCC
Q 045069 473 VDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE----DGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 540 (554)
.++.....|...|.. ..+.++|...|+++.+. .++.....|+.+|.. ..+.++|...+++..+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 888888888887776 34999999999998874 567788889888875 4589999999999988775
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=5.7e-13 Score=120.69 Aligned_cols=251 Identities=10% Similarity=-0.011 Sum_probs=136.2
Q ss_pred HHHHHHHHhcCChhhHHHHHhhc---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhc
Q 045069 244 SVLVSMYARCNCMNSAYHVFNSL---FHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKAD--PVLIASVLAAAAK 318 (554)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~ 318 (554)
......+...|++++|...|++. .+.+...+..+..++...|++++|...+++..+.+..|+ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34455566667777777777665 223444677777777777777777777777766321111 2235555566666
Q ss_pred cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHH
Q 045069 319 SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFF 395 (554)
Q Consensus 319 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~ 395 (554)
.|++++|...++...+.. +.+..++..+...|...|++++|...|++..+ | +...+..+...+...+++++|...|
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666665543 23344555555566666666666666655543 1 2223333331222223555555555
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHhcCCc---hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 045069 396 RDIIEKGLNPD-ESTFSALLCACCHGGL---VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK 471 (554)
Q Consensus 396 ~~m~~~g~~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 471 (554)
+++.+. .|+ ...+..+...+...|+ +++|...+++..+...-.|+.. -.
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~------------------------ 218 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KD------------------------ 218 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HH------------------------
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hH------------------------
Confidence 555442 222 2333333333333333 4444444444333211111110 00
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
.....+..+...+...|++++|...++++++.+|+++.....+.......+
T Consensus 219 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 219 -ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 012456678888889999999999999999999999998888876655543
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=2.5e-13 Score=121.50 Aligned_cols=203 Identities=13% Similarity=0.020 Sum_probs=145.6
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCC
Q 045069 310 ASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHG 386 (554)
Q Consensus 310 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 386 (554)
..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...+...|
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g 119 (252)
T 2ho1_A 41 IQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK 119 (252)
T ss_dssp HHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence 333344444444444444444444432 23445556666666666666666666665542 34456677777788888
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSF 465 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 465 (554)
++++|.++++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.
T Consensus 120 ~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 120 RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888877434554 446778888888999999999999988874 344577888889999999999999999
Q ss_pred HHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 466 IWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 466 ~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
++++. .+.+...+..+...+...|+.++|.+.++++.+..|+++.....+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 98864 356677788888889999999999999999999999988766544
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.7e-13 Score=120.08 Aligned_cols=199 Identities=10% Similarity=-0.016 Sum_probs=146.4
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045069 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC 415 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 415 (554)
.+...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3455666667777777777777777776552 344567777777777888888888888877742 234557777777
Q ss_pred HHhcC-CchHHHHHHHHHhHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCh
Q 045069 416 ACCHG-GLVNDGREIFTRMTEEYGIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNS 491 (554)
Q Consensus 416 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 491 (554)
.+... |++++|...++++.+. +..|+ ...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 8888888888887662 33333 5667777788888888888888887753 244577777888888888888
Q ss_pred HHHHHHHHHHHhcCC-CCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 492 DLAEIVAHQLFENDP-RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
++|...++++.+..| .++..+..++.++...|+.++|..+++.+.+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 888888888888888 888888878778888888888888888877654
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=6e-14 Score=118.82 Aligned_cols=167 Identities=14% Similarity=0.075 Sum_probs=146.1
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHH
Q 045069 371 NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYM 449 (554)
Q Consensus 371 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 449 (554)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+...+.+.|++++|...++..... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4567888888999999999999999999884 454 558888999999999999999999998874 45567778888
Q ss_pred HHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhH
Q 045069 450 VKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 527 (554)
...+...+++++|.+.+.+.. .+.+...+..+..++...|++++|++.++++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 888999999999999998864 366788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCc
Q 045069 528 VMKLRDDIVDNGLR 541 (554)
Q Consensus 528 A~~~~~~~~~~~~~ 541 (554)
|++.++++++..+.
T Consensus 160 A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 160 AVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhCCcc
Confidence 99999999887643
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=4e-14 Score=125.92 Aligned_cols=205 Identities=12% Similarity=0.023 Sum_probs=143.6
Q ss_pred HHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHH
Q 045069 314 AAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 390 (554)
..+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHH
Confidence 33334444444444444443322 22344555556666666666666666665442 345566777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|.+.++++.
T Consensus 110 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 110 AKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888753 335667888888899999999999999998874 45567788889999999999999999998864
Q ss_pred --CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 471 --KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 471 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
.+.+...+..+..++...|++++|...++++.+..|+++..+..++.+....
T Consensus 187 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 187 EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 3556788899999999999999999999999999999999888876554433
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.59 E-value=8.5e-14 Score=126.15 Aligned_cols=222 Identities=10% Similarity=-0.040 Sum_probs=154.0
Q ss_pred hccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcc----hHHHHHHHHHcCCChHH
Q 045069 317 AKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNII----TYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~~~~~~~ 390 (554)
...|+++.|...++.+.+.. +.+...+..+..+|...|++++|...+++..+ ++.. .|..+...+...|++++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 33333333333333333332 22333555566666666777777666665543 2222 36777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
|+..+++..+.. +.+..++..+...+...|++++|...+++..+. .+.+...+..+...+...+++++|.+.++++.
T Consensus 93 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 93 AIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVL 169 (272)
T ss_dssp HHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888742 224457888888888888888888888888662 34456667777734444568888888888764
Q ss_pred --CCCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcC---CCC-----chhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 471 --KPVDPAVSGALLSCCHIYGN---SDLAEIVAHQLFEND---PRK-----GAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 471 --~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
.+.+...+..+..++...|+ +++|...++++.+.. |+. ...+..++.+|...|++++|.++++++++
T Consensus 170 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 24557777778888888888 888999999998884 442 26788899999999999999999999998
Q ss_pred cCCcc
Q 045069 538 NGLRK 542 (554)
Q Consensus 538 ~~~~~ 542 (554)
..+..
T Consensus 250 ~~p~~ 254 (272)
T 3u4t_A 250 LDPTN 254 (272)
T ss_dssp HCTTC
T ss_pred cCccH
Confidence 76543
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=6.2e-13 Score=120.51 Aligned_cols=232 Identities=10% Similarity=-0.083 Sum_probs=167.6
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcCC-CChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLFH-PDLVTWSALITGYSQ----QGDYGKALYYFRKLNMQGKKADPVLIASVL 313 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 313 (554)
+...+..+...|...|++++|...|++..+ .+...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 566778888999999999999999998844 456778888999999 999999999999998876 667777777
Q ss_pred HHHhc----cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChH
Q 045069 314 AAAAK----SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTY 389 (554)
Q Consensus 314 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 389 (554)
..+.. .+++++|...++...+.+ +...+..+...|... ....++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~~ 131 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDFK 131 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCHH
Confidence 77777 777777777777766654 333444444444330 00056666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCH----GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEE 461 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 461 (554)
+|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+...|.. .+++++
T Consensus 132 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~ 204 (273)
T 1ouv_A 132 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKE 204 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 6666666666644 44556666666665 77777888777777663 2 45666777777777 788888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCch
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
|.+.+++.....++..+..+...+.. .+++++|...++++.+..|++..
T Consensus 205 A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 205 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 88887776444446677777777877 88888899999888888776543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=4.9e-13 Score=117.18 Aligned_cols=208 Identities=13% Similarity=0.028 Sum_probs=148.2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34455555666666666666666666555432 222344555555
Q ss_pred HHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchH
Q 045069 350 MYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLH-GFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVN 424 (554)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~ 424 (554)
.|...|++++|...++++.+ .+...+..+...+... |++++|...++++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 55566666666666655442 2445666677777788 888888888888877433444 457788888888999999
Q ss_pred HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--C-CChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 425 DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--P-VDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 425 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
+|...++++.+. .+.+...+..++..+...|++++|.+.++++.. + .+...+..+...+...|+.+.|..+++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999988774 344577888888899999999999999888642 4 56777777778888999999999999999
Q ss_pred HhcCCCCchhHHHH
Q 045069 502 FENDPRKGAYKVML 515 (554)
Q Consensus 502 ~~~~p~~~~~~~~l 515 (554)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999988876655
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=1.6e-13 Score=129.23 Aligned_cols=244 Identities=8% Similarity=0.033 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC-cchhHHHHHHHHHhcCCchHHHHHHHHHH
Q 045069 272 VTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN-VWPGAVIHGYVIQHGFELSVMVSSALVDM 350 (554)
Q Consensus 272 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 350 (554)
..|..+...+...|++++|+..+++..... +-+...|..+..++...|+ +++|...++++.+.. +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 445566666666777777777777666543 2234556666666666665 777777777766655 3456677777777
Q ss_pred HHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc-CCchHH
Q 045069 351 YSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCH-GGLVND 425 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~~~~~~ 425 (554)
+...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++. .| +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 7777888888877777663 34567777777888888888888888888884 44 45577778777777 555466
Q ss_pred H-----HHHHHHhHHHhCCCCChhHHHHHHHHHHhcC--ChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------
Q 045069 426 G-----REIFTRMTEEYGIQAKTEHYIYMVKLLGLAG--NLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYG-------- 489 (554)
Q Consensus 426 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~-------- 489 (554)
| +..+++.... -+-+...|..+..++...| ++++|++.+.++.. +.+...+..++.++.+.|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 4777777663 3445677888888888877 58888888877632 456667778888887764
Q ss_pred -ChHHHHHHHHHH-HhcCCCCchhHHHHHHHHHc
Q 045069 490 -NSDLAEIVAHQL-FENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 490 -~~~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 521 (554)
..++|+.+++++ .+.+|....+|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999999999888776654
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=4.3e-14 Score=136.64 Aligned_cols=262 Identities=11% Similarity=-0.016 Sum_probs=167.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhccCCcchhHHHHHHHHHh----c-CCchHHHHHH
Q 045069 276 ALITGYSQQGDYGKALYYFRKLNMQGKKADP----VLIASVLAAAAKSANVWPGAVIHGYVIQH----G-FELSVMVSSA 346 (554)
Q Consensus 276 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 346 (554)
.+...+...|++++|...|+++.+.+.. +. ..+..+...+...|+++.|...+++..+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444455555666666555555544211 11 24445555555556666666555554432 1 1223445566
Q ss_pred HHHHHHccCChHHHHHHHhccCC-----C----CcchHHHHHHHHHcCCC-----------------hHHHHHHHHHHHH
Q 045069 347 LVDMYSKCGYLGLGIQVFETMSE-----R----NIITYNSVILGLGLHGF-----------------TYQAFEFFRDIIE 400 (554)
Q Consensus 347 l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~ 400 (554)
+...|...|++++|...+++..+ . ...++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 66666666776666666665442 1 12355666666777777 7777777766554
Q ss_pred c----CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 045069 401 K----GLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK 471 (554)
Q Consensus 401 ~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 471 (554)
. +-.|. ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++...
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11121 236777777888888888888888887653111112 23677788888888898888888877531
Q ss_pred ----C----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 472 ----P----VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR------KGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 472 ----~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
. ....++..+...+...|++++|...++++++..+. ....+..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 12456777888888999999999999998887432 245788889999999999999999998875
Q ss_pred c
Q 045069 538 N 538 (554)
Q Consensus 538 ~ 538 (554)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=7.8e-14 Score=131.42 Aligned_cols=228 Identities=10% Similarity=0.021 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCC-hHHHHHHHhccCC---CCcchHHHHHHHH
Q 045069 307 VLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGY-LGLGIQVFETMSE---RNIITYNSVILGL 382 (554)
Q Consensus 307 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 382 (554)
..|..+...+...|++++|...++.+++.. +-+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356667777888999999999999999886 5567889999999999997 9999999998873 4567899999999
Q ss_pred HcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh-cCChH
Q 045069 383 GLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL-AGNLE 460 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 460 (554)
...|++++|+..|+++++ +.| +...|..+..++...|++++|+..++++.+. -+.+...|+.+..++.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999 455 4568999999999999999999999999884 44568899999999999 66657
Q ss_pred HH-----HHHHHhCC--CCCChhhHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC--------
Q 045069 461 EA-----YSFIWSLP--KPVDPAVSGALLSCCHIYG--NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG-------- 523 (554)
Q Consensus 461 ~A-----~~~~~~~~--~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 523 (554)
+| ++.+++.. .+.+...|..+...+...| ++++|++.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 47777753 4667889999999998888 689999999998 889999999999999999875
Q ss_pred -ChhHHHHHHHHH-hhcCC
Q 045069 524 -RWDDVMKLRDDI-VDNGL 540 (554)
Q Consensus 524 -~~~~A~~~~~~~-~~~~~ 540 (554)
.+++|+++++++ .+.++
T Consensus 332 ~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 359999999998 66543
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.1e-13 Score=133.48 Aligned_cols=289 Identities=15% Similarity=0.039 Sum_probs=144.3
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcC---CCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-H
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLF---HPD----LVTWSALITGYSQQGDYGKALYYFRKLNMQ----GKKAD-P 306 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~ 306 (554)
....+......+...|++++|...|++.. +.+ ..++..+...+...|++++|...+++.... +..|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 33445556666777777777777776651 122 245666666777777777777777665432 11111 2
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHhcC-----CchHHHHHHHHHHHHccCC--------------------hHHHH
Q 045069 307 VLIASVLAAAAKSANVWPGAVIHGYVIQHGF-----ELSVMVSSALVDMYSKCGY--------------------LGLGI 361 (554)
Q Consensus 307 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~A~ 361 (554)
..+..+...+...|+++.|...++...+... .....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455555566666666666666666543210 1113355555666666666 55555
Q ss_pred HHHhccCC-----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhcCCchHHHH
Q 045069 362 QVFETMSE-----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPD----ESTFSALLCACCHGGLVNDGR 427 (554)
Q Consensus 362 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~ll~~~~~~~~~~~a~ 427 (554)
..+++..+ ++ ..++..+...+...|++++|...+++..+.. -.++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 55554321 11 1234445555555555555555555554311 0111 114445555555555555555
Q ss_pred HHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCC----hhhHHHHHHHHHhcCChHHHH
Q 045069 428 EIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PVD----PAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 428 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~A~ 495 (554)
..+++..+...-.++ ..++..+...|...|++++|.+.+++... ..+ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555554432100011 33444555555555555555555544321 111 334444555555555555555
Q ss_pred HHHHHHHhcCCCCc------hhHHHHHHHHHccCChhH
Q 045069 496 IVAHQLFENDPRKG------AYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 496 ~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~ 527 (554)
..++++.+..+... ..+..++.++...|+...
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 55555555544442 233444444444444443
No 58
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=2.4e-13 Score=118.23 Aligned_cols=193 Identities=17% Similarity=0.070 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 270 DLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 270 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34445555555555556666665555555432 2233444444445555555555555555554443 233444555555
Q ss_pred HHHcc-----------CChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045069 350 MYSKC-----------GYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLC 415 (554)
Q Consensus 350 ~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 415 (554)
++... |++++|+..|++..+ | +...+..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55544 444444444444331 2 22334444444444444555555554444433 34444444444
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
++...|++++|...|++..+. .+.+...+..+..++.+.|++++|.+.+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 444445555555555444442 222334444444444444444444444443
No 59
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.53 E-value=1.6e-13 Score=128.47 Aligned_cols=263 Identities=12% Similarity=0.030 Sum_probs=172.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhccCCcchhHHHHHHHHHh----cC-CchHHHHHHHH
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQGKKAD---PVLIASVLAAAAKSANVWPGAVIHGYVIQH----GF-ELSVMVSSALV 348 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 348 (554)
....+...|++++|...++++.+...... ...+..+...+...|+++.|...++...+. +. +....++..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445555566666666555554421100 234445555555556666666555554322 11 12244566666
Q ss_pred HHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcCCC--------------------hHHHHHHHHHHH
Q 045069 349 DMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLHGF--------------------TYQAFEFFRDII 399 (554)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~ 399 (554)
..|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 677777777777776665442 12 2256666667777777 777777777765
Q ss_pred Hc----CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 400 EK----GLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 400 ~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
+. +..|. ..++..+...+...|++++|...+++..+...-.++ ..++..++..+...|++++|.+.+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11121 235777788888899999999999887653111111 3367888888999999999999988753
Q ss_pred C----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 471 K----PVD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK------GAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 471 ~----~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
. ..+ ..++..+...+...|++++|...++++++..|.. ...+..++.+|.+.|++++|.++++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 111 4567778888999999999999999998874332 4578889999999999999999999998
Q ss_pred hcC
Q 045069 537 DNG 539 (554)
Q Consensus 537 ~~~ 539 (554)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 753
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.51 E-value=1.6e-13 Score=134.35 Aligned_cols=193 Identities=8% Similarity=-0.108 Sum_probs=162.4
Q ss_pred chHHHHHHHHHHHHccCCh-HHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045069 339 LSVMVSSALVDMYSKCGYL-GLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALL 414 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 414 (554)
.+...+..+...|...|++ ++|++.|++..+ | +...|..+...|...|++++|...|++..+ ..|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3556666677777777777 777777776552 3 356788888888888999999999999988 568877888899
Q ss_pred HHHhcC---------CchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc--------CChHHHHHHHHhCC--CC---
Q 045069 415 CACCHG---------GLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA--------GNLEEAYSFIWSLP--KP--- 472 (554)
Q Consensus 415 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~--~~--- 472 (554)
..+... |++++|...+++..+. .+.+...+..+..+|... |++++|++.+++.. .+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999999 9999999999999884 455688889999999988 99999999998864 24
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
.++..|..+..++...|++++|.+.++++++.+|+++..+..++.++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 588899999999999999999999999999999999999999999999999999999765443
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=2.6e-13 Score=123.15 Aligned_cols=219 Identities=11% Similarity=-0.023 Sum_probs=179.3
Q ss_pred hccCCcchhHHHHHHHHHhcC---CchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHH
Q 045069 317 AKSANVWPGAVIHGYVIQHGF---ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQ 390 (554)
Q Consensus 317 ~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 390 (554)
...|++++|...++.+.+... +.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345788999999999987632 23577889999999999999999999998763 456789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 391 AFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 391 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+..........+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999952 234678999999999999999999999999874 4554445555556677899999999997653
Q ss_pred --CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 471 --KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR----KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 471 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.+++.. ...++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|.+.++++++..+
T Consensus 172 ~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKSDKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHSCCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcCCcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 233333 344777788888999999999999888653 368899999999999999999999999998764
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=2.2e-13 Score=131.30 Aligned_cols=267 Identities=9% Similarity=-0.036 Sum_probs=178.6
Q ss_pred CChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCc---hhHHHHHHHHHHhcCChhhHHHHHhhcCC---------CC
Q 045069 203 PDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSY---DYVSSVLVSMYARCNCMNSAYHVFNSLFH---------PD 270 (554)
Q Consensus 203 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~ 270 (554)
+....+......+...|+++.|...++.+.+...... ..++..+...|...|++++|...+++... ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3344555566677788888888888888877643321 24667777788888888888887776511 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCC--------------------cchh
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQGK-KAD----PVLIASVLAAAAKSAN--------------------VWPG 325 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a 325 (554)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34566777788888888888888877654311 011 3366667777777888 7788
Q ss_pred HHHHHHHHHh----cC-CchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcCCChHHH
Q 045069 326 AVIHGYVIQH----GF-ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLHGFTYQA 391 (554)
Q Consensus 326 ~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 391 (554)
...++...+. +. +....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7777766532 11 12244677777888888888888888877652 22 12677777788888888888
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHH
Q 045069 392 FEFFRDIIEKGL-NPD----ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEA 462 (554)
Q Consensus 392 ~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 462 (554)
...+++..+... .++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 888887765210 011 335677777888888888888888877653111112 45667777888888888888
Q ss_pred HHHHHhC
Q 045069 463 YSFIWSL 469 (554)
Q Consensus 463 ~~~~~~~ 469 (554)
.+.+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887764
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.49 E-value=5.4e-13 Score=127.44 Aligned_cols=224 Identities=7% Similarity=-0.064 Sum_probs=150.0
Q ss_pred HHHhccCCcchhHHHHHHHHHh----cCCc-hHHHHHHHHHHHHccCChHHHHHHHhccCC-----CC-----cchHHHH
Q 045069 314 AAAAKSANVWPGAVIHGYVIQH----GFEL-SVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RN-----IITYNSV 378 (554)
Q Consensus 314 ~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l 378 (554)
..+...|+++.|...++...+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445556666666666665542 1111 345666677777777777777776665542 11 2356677
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHH---hCC-CCChhHHHHH
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGL-NPDE----STFSALLCACCHGGLVNDGREIFTRMTEE---YGI-QAKTEHYIYM 449 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l 449 (554)
...|...|++++|...+++..+... .++. .++..+...|...|++++|...+++..+- .+. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 7778888888888888877765210 1121 26777888888888888888888887651 022 2335667888
Q ss_pred HHHHHhcCChHHHHHHHHhCCC-------CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 450 VKLLGLAGNLEEAYSFIWSLPK-------PVDPAVSGALLSCCHIYGN---SDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 450 ~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
...|.+.|++++|.+.+++... +.....+..+...+...|+ .++|..++++. ...|.....+..++.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 8888888888888888877531 1112234556677777888 77777777766 33455566788899999
Q ss_pred HccCChhHHHHHHHHHhhc
Q 045069 520 AEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~ 538 (554)
...|++++|.+++++..+.
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999998763
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.47 E-value=8e-10 Score=111.21 Aligned_cols=414 Identities=11% Similarity=0.022 Sum_probs=258.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCC---hhhHHHHHHHHHHhc-CCCCHhHH
Q 045069 67 RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSD---LPGLRFVHGGAIVSG-LGRDSITS 142 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~ 142 (554)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|..-+..-.+.++ ++.+..+|+..+... .+|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 46778888888888888888888888888876 44455567777777777777 888888888877664 23677777
Q ss_pred HHHHHHHHcCCCH--------hHHHHhhcccC------CC-CcchHHHHHHHHHh---------CCChhhHHHHHHHHHH
Q 045069 143 SALVTAYSKLSLI--------DEAIKVFDGVS------DP-DLVLCNSMISGFAH---------CGFWDKSLQLFDWMLR 198 (554)
Q Consensus 143 ~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~ 198 (554)
...+.-..+.++. +...++|+... .+ +...|...+..... .++++.+..+|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7666654444432 22335555422 12 23456666654332 2345667777777664
Q ss_pred CCCCCChhhHH---HHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhh-------cC-
Q 045069 199 LGKTPDEYTLV---GLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNS-------LF- 267 (554)
Q Consensus 199 ~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~- 267 (554)
.....-..+|. ..-... +...+.+++... ..+++.|...+.. +.
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~----~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDV----NQLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHH----CTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CccHHHHHHHHHHHHHHHhc----CcchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhh
Confidence 21111111221 111111 111111111110 0111122222211 10
Q ss_pred ---C----------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Q 045069 268 ---H----------P--D------LVTWSALITGYSQQG-------DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKS 319 (554)
Q Consensus 268 ---~----------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 319 (554)
. | + ...|...+.---..+ ..+++..+|++.... .+-....|...+.-+...
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~ 356 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEK 356 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhc
Confidence 0 0 0 133444444322222 134456677777665 344666777777777788
Q ss_pred CCcchhH-HHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-------------CC------------cc
Q 045069 320 ANVWPGA-VIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-------------RN------------II 373 (554)
Q Consensus 320 g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~ 373 (554)
|+.+.|. .+++...... +.+...+-..+....+.|+++.|.++|+.+.+ |+ ..
T Consensus 357 ~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~ 435 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTY 435 (679)
T ss_dssp SCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHH
Confidence 8888996 9999988653 55667777888888899999999999987763 31 23
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc-CCchHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEK-GLNPDESTFSALLCACCH-GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVK 451 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 451 (554)
.|...+....+.|+.+.|..+|.+.++. +. +....|...+..-.+ .++++.|..+|+...+. .+.+...+...++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHH
Confidence 5777777777889999999999999885 21 122333332222223 35689999999999885 4556667778888
Q ss_pred HHHhcCChHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 452 LLGLAGNLEEAYSFIWSLPK-PV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
.....|+.+.|..+|++... .+ ....|...+..-.+.|+.+.+..+.+++.+..|+++.+
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 88889999999999998653 22 34567777777788999999999999999999987643
No 65
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=4.3e-13 Score=124.09 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=126.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHh------c-
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQ-------GKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQH------G- 336 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~- 336 (554)
..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|...+++..+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455667777778888888888888777652 11222344555555666666666666666655443 1
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 045069 337 FELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLC 415 (554)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 415 (554)
.+....++..+...|...|++++|...|++..+ +.+.... +-.|+ ...+..+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~------------------------~~~~~~~-~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE------------------------IREKVLG-KDHPDVAKQLNNLAL 161 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------------------------HHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------HHHHhcC-CCChHHHHHHHHHHH
Confidence 122344455555555566666555555554321 0000000 11111 123445555
Q ss_pred HHhcCCchHHHHHHHHHhHHHh-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CCC----
Q 045069 416 ACCHGGLVNDGREIFTRMTEEY-----GIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----------PVD---- 474 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~---- 474 (554)
.+...|++++|..+++++.+.. +..| ...++..+...|...|++++|.+.++++.. +..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 5555555555555555554420 0011 133445555555556666666555554321 001
Q ss_pred --hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 475 --PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 475 --~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
...+..+...+...+.+.++...+++.....|..+..+..++.+|.+.|++++|.++++++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333445566777777888888888888899999999999999999999999988764
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=9.4e-13 Score=127.16 Aligned_cols=262 Identities=14% Similarity=0.046 Sum_probs=177.6
Q ss_pred HHHHHHHhcCChhhHHHHHhhcC---CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHH
Q 045069 245 VLVSMYARCNCMNSAYHVFNSLF---HPDL----VTWSALITGYSQQGDYGKALYYFRKLNMQ----GK-KADPVLIASV 312 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~---~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~-~~~~~~~~~l 312 (554)
.+...+...|++++|...|++.. +.+. ..|..+...|...|++++|...+++..+. +. ......+..+
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 34455666666666666666651 1222 35666666677777777777777665432 11 1123455566
Q ss_pred HHHHhccCCcchhHHHHHHHHHh----c-CCchHHHHHHHHHHHHccCC-----------------hHHHHHHHhccCC-
Q 045069 313 LAAAAKSANVWPGAVIHGYVIQH----G-FELSVMVSSALVDMYSKCGY-----------------LGLGIQVFETMSE- 369 (554)
Q Consensus 313 ~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~- 369 (554)
...+...|+++.|...+++..+. + .+....++..+...|...|+ +++|.+.+++..+
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 66677777777777777665543 1 12234567777778888888 7888777766542
Q ss_pred ----C----CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 370 ----R----NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPD----ESTFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 370 ----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
. ....+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1 123677788888889999999999988876311 112 126778888899999999999999887763
Q ss_pred hCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCCC--------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 437 YGIQA----KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 437 ~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
..-.. ...++..+...|...|++++|.+++++... .....++..+...+...|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11111 146778888999999999999999987641 112447778888999999999999999999887
Q ss_pred CC
Q 045069 505 DP 506 (554)
Q Consensus 505 ~p 506 (554)
.+
T Consensus 373 ~~ 374 (411)
T 4a1s_A 373 AX 374 (411)
T ss_dssp CC
T ss_pred Hh
Confidence 54
No 67
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=1.8e-12 Score=109.68 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=104.4
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG 457 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (554)
+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 333344444444444444444332 1123344555555555555555555555555542 2334455555666666666
Q ss_pred ChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHH
Q 045069 458 NLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 458 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
++++|.+.++++. .+.+...+..++..+...|++++|...++++.+..|.++..+..++.++...|++++|.++++++
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666665542 24456677777888888888899999999998888988899999999999999999999999998
Q ss_pred hhcCCcc
Q 045069 536 VDNGLRK 542 (554)
Q Consensus 536 ~~~~~~~ 542 (554)
.+..+..
T Consensus 171 ~~~~~~~ 177 (186)
T 3as5_A 171 NELDEGA 177 (186)
T ss_dssp HHHHHCC
T ss_pred HHcCCCc
Confidence 8765433
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=3.6e-12 Score=107.77 Aligned_cols=168 Identities=13% Similarity=0.041 Sum_probs=141.1
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCA 416 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 416 (554)
++.+|..+...|...|++++|++.|++..+ .+..++..+...|.+.|++++|...+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456788888888888888888888887663 355678888889999999999999999988852 2345577778888
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 494 (554)
+...++++.|...+.+..+. .+.+...+..+...|.+.|++++|++.+++.. .+.++.++..++.++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998873 45567888999999999999999999998864 467788999999999999999999
Q ss_pred HHHHHHHHhcCCCCch
Q 045069 495 EIVAHQLFENDPRKGA 510 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~ 510 (554)
+..++++++.+|+++.
T Consensus 161 ~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 161 VKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhCCccCHH
Confidence 9999999999987643
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=1.6e-12 Score=132.26 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=142.3
Q ss_pred cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHH
Q 045069 372 IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMV 450 (554)
Q Consensus 372 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 450 (554)
..+|+.|...|.+.|++++|++.|++.++ +.|+ ..+|..+..+|.+.|++++|+..|++..+. -+-+...|..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 35677888888888889999999998888 4565 558888999999999999999999998873 334578889999
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHH
Q 045069 451 KLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 528 (554)
.+|.+.|++++|++.+++.. .+.+...+..+..++...|++++|+..|+++++.+|+++..+..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 99999999999999998864 3667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 045069 529 MKLRDDIVDN 538 (554)
Q Consensus 529 ~~~~~~~~~~ 538 (554)
.+.++++++.
T Consensus 165 ~~~~~kal~l 174 (723)
T 4gyw_A 165 DERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998753
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=1e-11 Score=114.55 Aligned_cols=219 Identities=8% Similarity=-0.019 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------ccCCc-------chhHHHHHHHHHhcCCchHHHHHHHHHHHHc
Q 045069 288 GKALYYFRKLNMQGKKADPVLIASVLAAAA-------KSANV-------WPGAVIHGYVIQHGFELSVMVSSALVDMYSK 353 (554)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 353 (554)
++|...|++..... +-+...|..+...+. ..|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888777642 334556666655554 24665 6777777777663113345567777777777
Q ss_pred cCChHHHHHHHhccCC--CC-cc-hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCchHHHHH
Q 045069 354 CGYLGLGIQVFETMSE--RN-II-TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC-CHGGLVNDGRE 428 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~ 428 (554)
.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777776653 32 22 57777777777777777777777777642 12233443333222 12577777777
Q ss_pred HHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045069 429 IFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PV--DPAVSGALLSCCHIYGNSDLAEIVAHQLF 502 (554)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 502 (554)
+|++..+. .+.+...+..++..+.+.|+.++|..+|++... +| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777663 334566677777777777777777777776532 22 34466666666677777777777777777
Q ss_pred hcCCCCch
Q 045069 503 ENDPRKGA 510 (554)
Q Consensus 503 ~~~p~~~~ 510 (554)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 77776543
No 71
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.41 E-value=4.5e-10 Score=113.03 Aligned_cols=438 Identities=10% Similarity=-0.030 Sum_probs=273.9
Q ss_pred CChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC---HhHHH
Q 045069 83 HRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL---IDEAI 159 (554)
Q Consensus 83 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~ 159 (554)
....+.+..|+..+..+. -|..+|..++..+.+.+.++.+..+++.+...- +.....|...+..-.+.|. ++.+.
T Consensus 46 ~~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 334556666666666643 478889899998888889999999999988773 4567778888888788888 88999
Q ss_pred HhhcccCC-----CCcchHHHHHHHHHhCCCh--------hhHHHHHHHHHH-CCC-CCCh-hhHHHHHHHcc-------
Q 045069 160 KVFDGVSD-----PDLVLCNSMISGFAHCGFW--------DKSLQLFDWMLR-LGK-TPDE-YTLVGLISGLW------- 216 (554)
Q Consensus 160 ~~~~~~~~-----~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~------- 216 (554)
.+|++... |++..|...+....+.++. +.+.++|+.... .|. .|+. ..|...+.-..
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99887654 5666777776655555543 223356665443 355 4443 33333332211
Q ss_pred --cCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045069 217 --EPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYF 294 (554)
Q Consensus 217 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 294 (554)
..++.+.+..+|..++......-..+|......-...+ ...+.++ +.- ...+++.|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~---------------~~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRH---------------IGE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHH---------------HHH--HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHH---------------HHH--hhHHHHHHHHHH
Confidence 11233445555555553211111222222111110000 0001111 110 112334444444
Q ss_pred HHHHhC--CCC---------------C-----CH---HHHHHHHHHHhccC-C------cchhHHHHHHHHHhcCCchHH
Q 045069 295 RKLNMQ--GKK---------------A-----DP---VLIASVLAAAAKSA-N------VWPGAVIHGYVIQHGFELSVM 342 (554)
Q Consensus 295 ~~m~~~--~~~---------------~-----~~---~~~~~l~~~~~~~g-~------~~~a~~~~~~~~~~~~~~~~~ 342 (554)
.++... ++. | +. ..|...+.---..+ . .+.+..+|++.+... +-...
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 443211 110 1 11 22333332221211 1 123445677776653 45677
Q ss_pred HHHHHHHHHHccCChHHHH-HHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCC---------CCC---
Q 045069 343 VSSALVDMYSKCGYLGLGI-QVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGL---------NPD--- 406 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---------~p~--- 406 (554)
.|-..+..+...|+.++|. .+|++... | +...|...+...-+.|+++.|.++|+++.+... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888888899999996 99988763 4 444567788888899999999999999987410 142
Q ss_pred ---------HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc-CChHHHHHHHHhCCC--CCC
Q 045069 407 ---------ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA-GNLEEAYSFIWSLPK--PVD 474 (554)
Q Consensus 407 ---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~--~~~ 474 (554)
...|...+....+.|+.+.|..+|.+..+. ...+....|...+..-.+. ++.+.|.++|+.... +.+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 235777777777889999999999999873 1222344555444444444 458999999988642 557
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR---KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
+..|...+......|+.+.|..+|++++...|+ ....+...+..-.+.|+.+.+.++.+++.+.-+..
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 777778888888899999999999999999873 45677778888889999999999999999876643
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.40 E-value=1.2e-11 Score=118.01 Aligned_cols=228 Identities=10% Similarity=0.018 Sum_probs=166.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHhc------CCchHHHHH
Q 045069 277 LITGYSQQGDYGKALYYFRKLNMQ----GKKA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQHG------FELSVMVSS 345 (554)
Q Consensus 277 l~~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~ 345 (554)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+.+..+.. .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777777777777777643 1111 22456666677777777777777777765431 112345677
Q ss_pred HHHHHHHccCChHHHHHHHhccCC-----CCc----chHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMSE-----RNI----ITYNSVILGLGLHGFTYQAFEFFRDIIEK----GLNPD-ESTFS 411 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~ 411 (554)
.+..+|...|++++|...|++..+ ++. .++..+...|...|++++|+..+++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888888899999999888887652 221 36788888999999999999999998872 23243 45788
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHh---CCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCCC-ChhhHHHHHHH
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEY---GIQAKTEHYIYMVKLLGLAGN---LEEAYSFIWSLPKPV-DPAVSGALLSC 484 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~ 484 (554)
.+...+.+.|++++|...+++..+.. +.+.....+..+...+...|+ .++|+.++++....+ ....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999876631 122223345678888889999 899999999886433 34567788899
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 045069 485 CHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~ 504 (554)
|...|++++|...++++.+.
T Consensus 349 y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999876
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=3.1e-12 Score=119.59 Aligned_cols=261 Identities=15% Similarity=0.048 Sum_probs=160.5
Q ss_pred HHHHHhcCChhhHHHHHhhc---CCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHH
Q 045069 247 VSMYARCNCMNSAYHVFNSL---FHPD----LVTWSALITGYSQQGDYGKALYYFRKLNMQ----GKKA-DPVLIASVLA 314 (554)
Q Consensus 247 ~~~~~~~~~~~~a~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~ 314 (554)
...+...|++++|...|++. .+.+ ...+..+...+...|++++|...+++.... +..| ....+..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 33445555555555555554 1111 234555555566666666666666554322 1111 1234455555
Q ss_pred HHhccCCcchhHHHHHHHHHhcC-----CchHHHHHHHHHHHHccCC--------------------hHHHHHHHhccCC
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGF-----ELSVMVSSALVDMYSKCGY--------------------LGLGIQVFETMSE 369 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~ 369 (554)
.+...|+++.|...+++..+... .....++..+...|...|+ +++|...+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 66666666666666665543210 1113356666667777777 6777666665431
Q ss_pred -----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 370 -----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPD----ESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 370 -----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
++ ...+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 23566677778888888888888888765210 111 22677788888889999999999888765
Q ss_pred HhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC----CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 436 EYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 436 ~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
...-.++ ..++..+...+...|++++|.+.+++... .. ...++..+...+...|++++|...++++.+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3111112 55677888889999999999998887531 11 244677888889999999999999999988
Q ss_pred cCCC
Q 045069 504 NDPR 507 (554)
Q Consensus 504 ~~p~ 507 (554)
..+.
T Consensus 332 ~~~~ 335 (338)
T 3ro2_A 332 ISRE 335 (338)
T ss_dssp C---
T ss_pred HHHh
Confidence 7653
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=1.3e-11 Score=108.27 Aligned_cols=191 Identities=9% Similarity=-0.049 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC----CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE----RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALL 414 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll 414 (554)
++..+......+...|++++|...|+...+ ++...+..+..++...|++++|+..+++..+ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 345555556666666666666666665441 3444444455566666666666666666665 34443 2555566
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhCCC-CC---ChhhHHHHHH
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKT-------EHYIYMVKLLGLAGNLEEAYSFIWSLPK-PV---DPAVSGALLS 483 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~~~~~~l~~ 483 (554)
..+...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.++++.. .| +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6666666666666666666552 22223 3345555555555666666666555432 22 2344444444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++... +...++++....+.++..+... .....|.+++|+.++++..+..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCC
Confidence 44332 2333444444444443333222 233344559999999999887653
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.38 E-value=9.1e-11 Score=108.10 Aligned_cols=178 Identities=9% Similarity=0.102 Sum_probs=84.7
Q ss_pred HHHHHHHhccCC---C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-H-HHHHHHHHHhcCCchHHHHHHHH
Q 045069 358 GLGIQVFETMSE---R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-S-TFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 358 ~~A~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
++|..+|++..+ | +...|..++..+.+.|++++|..+|+++++ +.|+. . .|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555554332 2 223455555555555555555555555555 33321 1 45555555555555555555555
Q ss_pred HhHHHhCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc---C
Q 045069 432 RMTEEYGIQAKTEHYIYMVKLLG-LAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN---D 505 (554)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~ 505 (554)
+..+. .+++...|...+.... ..|+.++|.++|++.. .+.++..|..++..+...|++++|..+|+++++. .
T Consensus 159 ~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 55441 1223333332222211 2455555555555542 1334455555555555555555555555555553 2
Q ss_pred CC-CchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 506 PR-KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 506 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
|+ ...++..++..+.+.|+.++|..+++++.+..
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 21 33445555555555555555555555555443
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.38 E-value=8.6e-12 Score=118.82 Aligned_cols=222 Identities=7% Similarity=-0.090 Sum_probs=148.3
Q ss_pred HHhccCCcchhHHHHHHHHHhcC-----CchHHHHHHHHHHHHccCChHHHHHHHhccCC-----CC-----cchHHHHH
Q 045069 315 AAAKSANVWPGAVIHGYVIQHGF-----ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-----RN-----IITYNSVI 379 (554)
Q Consensus 315 ~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-----~~~~~~l~ 379 (554)
.+...|+++.|...+++..+... .....++..+...|...|+++.|...+++..+ ++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 44566777777777766654311 11345666677777777777777777665541 11 23566777
Q ss_pred HHHHcCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHH---hCCCCChhHHHHHHH
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEK----GLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEE---YGIQAKTEHYIYMVK 451 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~ 451 (554)
..|...|++++|...+++..+. +-.+. ..++..+...|...|++++|...+++..+- .+.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7788888888888888877652 11111 235777888888888888888888887651 122333667778888
Q ss_pred HHHhcCChHHHHHHHHhCC----C---CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHc
Q 045069 452 LLGLAGNLEEAYSFIWSLP----K---PVDPAVSGALLSCCHIYGN---SDLAEIVAHQLFENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 521 (554)
++.+.|++++|.+++++.. . +.....+..+...+...++ +++|+..+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 8888999999988887742 1 1122334455555666777 77777777662 2234455677789999999
Q ss_pred cCChhHHHHHHHHHhh
Q 045069 522 DGRWDDVMKLRDDIVD 537 (554)
Q Consensus 522 ~g~~~~A~~~~~~~~~ 537 (554)
.|++++|.++++++.+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998875
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=3.1e-10 Score=107.86 Aligned_cols=194 Identities=18% Similarity=0.152 Sum_probs=95.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCC-------C----CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC--C--CHH
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSE-------R----NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN--P--DES 408 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~ 408 (554)
+..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++..+.... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 33444455555555555555554331 1 0123334445555566666666666655542111 0 123
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhCCCC-CC-----hhh
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYI-----YMVKLLGLAGNLEEAYSFIWSLPKP-VD-----PAV 477 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~-~~-----~~~ 477 (554)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|..++++.... +. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455555556666666666666666544211111111111 1223355666666666666655321 10 112
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPR------KGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+..+...+...|++++|...++++.+..+. ....+..++.++...|++++|.+.+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555566666666666666666554221 112445556666666666666666666554
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.34 E-value=9.9e-12 Score=121.70 Aligned_cols=179 Identities=9% Similarity=-0.052 Sum_probs=157.4
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHcCCCh-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHH
Q 045069 357 LGLGIQVFETMSE---RNIITYNSVILGLGLHGFT-YQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFT 431 (554)
Q Consensus 357 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 431 (554)
++++...++.... .+...+..+...+...|++ ++|+..|++..+. .|+ ...|..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555556654432 4567888899999999999 9999999999984 455 6689999999999999999999999
Q ss_pred HhHHHhCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc--------CChH
Q 045069 432 RMTEEYGIQAKTEHYIYMVKLLGLA---------GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY--------GNSD 492 (554)
Q Consensus 432 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~--------~~~~ 492 (554)
+..+ ..|+...+..+..+|... |++++|++.++++. .+.+...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9976 467788999999999999 99999999999964 466788999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 493 LAEIVAHQLFENDP---RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 493 ~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+|+..++++++.+| .++..+..++.+|...|++++|++.++++.+..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999 9999999999999999999999999999988654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=6.5e-11 Score=103.85 Aligned_cols=205 Identities=10% Similarity=-0.024 Sum_probs=161.8
Q ss_pred CCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHH
Q 045069 304 ADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVIL 380 (554)
Q Consensus 304 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~ 380 (554)
.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|+..|++..+ | +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 466788888899999999999999999999987546777777799999999999999999998763 3 4467888999
Q ss_pred HHHcCCChHHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC---hhHHHHH
Q 045069 381 GLGLHGFTYQAFEFFRDIIEKGLNPD-E-------STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK---TEHYIYM 449 (554)
Q Consensus 381 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 449 (554)
.+...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...|++..+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 454 3 3577788888999999999999999976 3454 6778888
Q ss_pred HHHHHhcCCh--HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 450 VKLLGLAGNL--EEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 450 ~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
..+|...|+. ++|..+. +.+...+.... ....+.+++|+..++++++.+|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766654 3322221 22333343332 345577999999999999999999998888876543
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=1e-10 Score=98.69 Aligned_cols=168 Identities=11% Similarity=0.013 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCAC 417 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 417 (554)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677788889999999999999999875 355678888999999999999999999999852 33567888899999
Q ss_pred hcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHH
Q 045069 418 CHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 418 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
...|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++. .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999884 45678888999999999999999999998864 3567788999999999999999999
Q ss_pred HHHHHHHhcCCCCchh
Q 045069 496 IVAHQLFENDPRKGAY 511 (554)
Q Consensus 496 ~~~~~~~~~~p~~~~~ 511 (554)
..++++.+..|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998877654
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=9.3e-11 Score=106.49 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=67.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHh-----C-CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----------
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEY-----G-IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----------- 471 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------- 471 (554)
++..+...+...|++++|...+++..+.. + .+....++..+...|...|++++|.++++++..
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 45555555566666666666665554420 0 111234455556666666666666666555320
Q ss_pred CCChhhHHHHHHHHHhcC------ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 472 PVDPAVSGALLSCCHIYG------NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
......+..+.......+ .+..+...++......|.....+..++.+|...|++++|.++++++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111222222222222222 2333333444333344666678888999999999999999999888763
No 82
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=2.3e-11 Score=112.34 Aligned_cols=238 Identities=11% Similarity=0.023 Sum_probs=142.2
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLFH-----------PDLVTWSALITGYSQQGDYGKALYYFRKLNMQ------G 301 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~ 301 (554)
...++..+...+...|++++|...++++.+ ....++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345666777778888888888888777622 12355777888888999999999998888754 2
Q ss_pred CCC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHhc------C-CchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcc
Q 045069 302 KKA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQHG------F-ELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNII 373 (554)
Q Consensus 302 ~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 373 (554)
..| ....+..+...+...|++++|...++++.+.. . +.....+..+...+...|++++|...|
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~--------- 176 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYY--------- 176 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH---------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH---------
Confidence 222 34577788888899999999999988876541 1 122334445555555555555555444
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHh------CCC
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEK------GLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEY------GIQ 440 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~ 440 (554)
+++.+. +..|. ..++..+...+...|++++|...++++.+.. ...
T Consensus 177 ----------------------~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 177 ----------------------QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ----------------------HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ----------------------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 444332 11222 2245666666667777777777776665420 011
Q ss_pred CC-------hhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 441 AK-------TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 441 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+. ...+..+...+...+.+.+|...+..... +....++..+..+|...|++++|...++++++..|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11122223333444555555556655542 345667888899999999999999999999887664
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=1e-09 Score=104.45 Aligned_cols=226 Identities=11% Similarity=0.055 Sum_probs=148.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhccCCcchhHHHHHHHHHhcC-----C-chHHHHHHH
Q 045069 279 TGYSQQGDYGKALYYFRKLNMQGK-KAD----PVLIASVLAAAAKSANVWPGAVIHGYVIQHGF-----E-LSVMVSSAL 347 (554)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l 347 (554)
..+...|++++|...+++..+... .++ ..++..+...+...|+++.|...+++..+... . ....+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344555666666666665543210 111 23445555556666666666666655543210 1 124556677
Q ss_pred HHHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHc----CCCCCHHHHHHHH
Q 045069 348 VDMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEK----GLNPDESTFSALL 414 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll 414 (554)
..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|...+++..+. +.+....++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 7777777777777777766542 12 235667777888888888888888887761 1222255788888
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCC---CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCCCC-CChhhHHHHHHHHHh
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGI---QAKTEHYIYMVKLLGLAGN---LEEAYSFIWSLPKP-VDPAVSGALLSCCHI 487 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (554)
..+.+.|++++|...+++..+...- +.....+..+...+...|+ ..+|+.++++.... .....+..+...|..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 8999999999999999988774221 1123445666667777888 88899998886542 234456678888999
Q ss_pred cCChHHHHHHHHHHHhc
Q 045069 488 YGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~ 504 (554)
.|++++|...++++.+.
T Consensus 349 ~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988764
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=7.2e-10 Score=96.80 Aligned_cols=184 Identities=11% Similarity=-0.035 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCC--CCc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSE--RNI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE----STFS 411 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~ 411 (554)
..+..+...+.+.|++++|...|+.+.+ |+. ..+..+..++.+.|++++|+..|+++.+. .|+. .++.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444555667777777777777776652 332 34566666777777777777777777763 3332 1333
Q ss_pred HHHHHHhc------------------CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 045069 412 ALLCACCH------------------GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPV 473 (554)
Q Consensus 412 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 473 (554)
.+..++.. .|++++|...|+++.+. .|-+............-.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~-------------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL-------------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH--------------
Confidence 34444432 45566666666666542 222222222111110000000
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
......+...+.+.|++++|+..++++++..|+++ ..+..++.+|.+.|++++|++.++.+...++....
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01113456778899999999999999999999986 56889999999999999999999999887765544
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.20 E-value=3.6e-09 Score=94.41 Aligned_cols=244 Identities=10% Similarity=-0.016 Sum_probs=141.3
Q ss_pred HHHHhcCChhhHHHHHhhcCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhH
Q 045069 248 SMYARCNCMNSAYHVFNSLFHPD-LVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGA 326 (554)
Q Consensus 248 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 326 (554)
+-..-.|.+..++.-...+.+.+ ...-.-+.++|...|+++.. ..-.|....+..+...+ ..+ +.
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~ 86 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NI 86 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CC
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HH
Confidence 33455677777776555553222 22222344666666666531 11233333333333332 221 56
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCCC-----CcchHHHHHHHHHcCCChHHHHHHHHHHHHc
Q 045069 327 VIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSER-----NIITYNSVILGLGLHGFTYQAFEFFRDIIEK 401 (554)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 401 (554)
..+++..+.+ +++...+..+..++...|++++|++++.+...+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 87 ~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~- 164 (310)
T 3mv2_B 87 EELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN- 164 (310)
T ss_dssp HHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 6666666554 344444456777777778888887777766332 334566667777777888888888877776
Q ss_pred CCCC-----CHHHHHHHHHHH--hc--CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-
Q 045069 402 GLNP-----DESTFSALLCAC--CH--GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK- 471 (554)
Q Consensus 402 g~~p-----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 471 (554)
..| +..+...+..++ .. .+++.+|..+|+++.++ .|+...-..+..++.+.|++++|.+.++.+..
T Consensus 165 -~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 -AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp -HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred -cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456 244555555442 22 33777777777777553 34422223333367777777777777765422
Q ss_pred -----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 472 -----------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 472 -----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
+.++.++..++......|+ +|.++++++.+..|+++.+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 4456666566555555665 677777777777777766543
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=1.9e-09 Score=96.10 Aligned_cols=241 Identities=12% Similarity=0.044 Sum_probs=167.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCCh
Q 045069 278 ITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYL 357 (554)
Q Consensus 278 ~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (554)
++-..-.|++..++.-..++ ..........-+.+++...|++.... .-.|....+..+...+ ..+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT--
T ss_pred HHHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc--
Confidence 34455678898888743332 21222334444567888888876532 2234444444444433 322
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHh
Q 045069 358 GLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 358 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 433 (554)
|+..|++... ++..++..+..++...|++++|++++.+.++.|..+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 445556677888999999999999999987755323 4457888899999999999999999999
Q ss_pred HHHhCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 434 TEEYGIQA-----KTEHYIYMVKL--LGLAG--NLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 434 ~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
.+. .| +..+...++.+ ....| +..+|..+|+++.. .|+......++.++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 763 56 34555556555 33334 89999999999754 34433344455588899999999999998777
Q ss_pred c----------CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 504 N----------DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 504 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
. +|+++.++..++.+....|+ +|.++++++.+..+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 5 48899999888777777887 89999999988764
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=6.2e-10 Score=99.81 Aligned_cols=184 Identities=11% Similarity=-0.006 Sum_probs=116.0
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHHhccCC--CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 045069 340 SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPD-ESTFS 411 (554)
Q Consensus 340 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~ 411 (554)
+...+..+...+.+.|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445556666677777777777777777653 33 34566666777777777777777777776321 112 23455
Q ss_pred HHHHHHhc--------CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHH
Q 045069 412 ALLCACCH--------GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLS 483 (554)
Q Consensus 412 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 483 (554)
.+..++.. .|++++|...|+++.+. .+.+......+.......+.. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 66666666 77777777777777663 222222222221111110000 111355677
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHHHHHcc----------CChhHHHHHHHHHhhcCC
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSNTYAED----------GRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~ 540 (554)
.+...|++++|+..++++++..|++ +..+..++.+|... |++++|...++++++..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 7888888888888888888888874 34777788888766 788888888888877654
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=5.9e-10 Score=88.31 Aligned_cols=128 Identities=18% Similarity=0.186 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHh
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHI 487 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (554)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.++++++. .+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555556666666666655542 22344555555666666666666666665542 23455566777777888
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.|++++|...++++.+..|.++..+..++.++...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888889999999999999998887754
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=6.1e-11 Score=96.02 Aligned_cols=142 Identities=7% Similarity=-0.099 Sum_probs=105.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG 457 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 457 (554)
...+...|++++|+..+++... ..|+.. .+..+...|.+.|++++|++.|++..+. -+-+..+|..+..+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3445556777788777777654 334332 4566777788888888888888888773 3445777888888888888
Q ss_pred ChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHH-HHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 458 NLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEI-VAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 458 ~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
++++|+..|++.. .+.++..+..+...+.+.|++++|.+ +++++++.+|+++.++.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887754 35577788888888888888876555 4688999999999999988888888775
No 90
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.17 E-value=1.7e-10 Score=117.52 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=135.8
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 045069 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALL 414 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll 414 (554)
-+...++.|..+|.+.|++++|++.|++..+ | +..+|..+..+|.+.|++++|+..|++.++ +.|+ ..+|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 3567788888888888999999988887663 3 456788888899999999999999999988 4565 55888899
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChH
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSD 492 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 492 (554)
.++...|++++|++.|++..+. -+-+...+..+..+|.+.|++++|++.+++.. .+.+...+..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999998873 34457888999999999999999999998864 3667888899999999999999
Q ss_pred HHHHHHHHHHhcC
Q 045069 493 LAEIVAHQLFEND 505 (554)
Q Consensus 493 ~A~~~~~~~~~~~ 505 (554)
+|.+.++++++..
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888763
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=1.2e-08 Score=96.72 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHH---hCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEE---YGIQAKT-EHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
+..+...+...|++++|...+++.... .+.+++. ..+..+..++...|+.++|...+++.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444555555555555555554331 1111121 24445555556666666666665554
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=5.2e-10 Score=102.06 Aligned_cols=191 Identities=15% Similarity=0.039 Sum_probs=124.7
Q ss_pred HHHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 045069 348 VDMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN-PD----ESTFSAL 413 (554)
Q Consensus 348 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 413 (554)
...|...|++++|...|++..+ .+ ..+|+.+..+|...|++++|+..+++..+.... .+ ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445666777777766665442 11 346677777777888888888877777652100 11 2367778
Q ss_pred HHHHhcC-CchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCCC-CC---Ch-----hhHH
Q 045069 414 LCACCHG-GLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PV---DP-----AVSG 479 (554)
Q Consensus 414 l~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~-----~~~~ 479 (554)
...|... |++++|+..|++..+-..-..+ ..++..+...+.+.|++++|+..+++... .| .. ..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8888885 9999999888887763111111 34677888888999999999998887531 11 11 1466
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchh-----HHHHHHHHH--ccCChhHHHHHHHHHhhc
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY-----KVMLSNTYA--EDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 538 (554)
.++.++...|++++|+..++++++.+|..... +..++.++. ..+++++|++.++++...
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 77778888899999999999999988875542 344555554 467788888888776544
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=8.7e-10 Score=98.86 Aligned_cols=205 Identities=10% Similarity=-0.027 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHccCChHHHHHHHhccCC--CC----cch
Q 045069 303 KADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL--SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RN----IIT 374 (554)
Q Consensus 303 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~ 374 (554)
..+...+......+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+...+ |+ ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 3456677788888999999999999999998875221 167788899999999999999999998873 42 235
Q ss_pred HHHHHHHHHc--------CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhH
Q 045069 375 YNSVILGLGL--------HGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEH 445 (554)
Q Consensus 375 ~~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 445 (554)
+..+..++.. .|++++|+..|+++++. .|+.. ....+ ..+...... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 6677788888 99999999999999984 45432 22111 111111110 0122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCch
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK-PV----DPAVSGALLSCCHIY----------GNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+..+...|.+.|++++|+..++++.. .| .+..+..+..++... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 45667777888888888888877531 12 345666777777655 8899999999999999999864
Q ss_pred ---hHHHHHHHHHccCChhHH
Q 045069 511 ---YKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 511 ---~~~~l~~~~~~~g~~~~A 528 (554)
....+..++.+.|+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 444555555555555443
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.11 E-value=1.5e-09 Score=98.98 Aligned_cols=172 Identities=8% Similarity=-0.068 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCC-----CC----cchHHHHHHHHHcC-CChHHHHHHHHHHHHcCCCC---C--
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSE-----RN----IITYNSVILGLGLH-GFTYQAFEFFRDIIEKGLNP---D-- 406 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p---~-- 406 (554)
.+|+.+..+|.+.|++++|+..|++..+ .+ ..+++.+...|... |++++|+..|++..+. .| +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence 4455555555556666665555554432 11 23566677777775 8888888888887762 22 1
Q ss_pred --HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC-CCh-----hHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC---
Q 045069 407 --ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQ-AKT-----EHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVD--- 474 (554)
Q Consensus 407 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--- 474 (554)
..++..+...+.+.|++++|...|++..+. ... +.. ..+..++.++...|++++|...+++... .|+
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 235777888888888999998888888773 211 111 1566777788888899999988888642 222
Q ss_pred ---hhhHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 475 ---PAVSGALLSCCH--IYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 475 ---~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
...+..++.++. ..+++++|+..|+++...+|........+-
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 112344455553 346788888888887777776555444443
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=7.8e-09 Score=89.11 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=126.3
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----chHHHHHHHHHhHHHhCCCCChhH
Q 045069 370 RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG----LVNDGREIFTRMTEEYGIQAKTEH 445 (554)
Q Consensus 370 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 445 (554)
.+...+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 344555666666666777888888888887754 55667777777777 6 888888888888663 35667
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCCCCCC----hhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 446 YIYMVKLLGL----AGNLEEAYSFIWSLPKPVD----PAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 446 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
+..+...|.. .+++++|++++++.....+ +..+..|...|.. .++.++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 7889999999988765433 7888888888888 78999999999999988 77778889
Q ss_pred HHHHHHHcc-C-----ChhHHHHHHHHHhhcCC
Q 045069 514 MLSNTYAED-G-----RWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 514 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 540 (554)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999888754 3 89999999999988764
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.07 E-value=2.7e-09 Score=96.91 Aligned_cols=172 Identities=12% Similarity=0.016 Sum_probs=136.8
Q ss_pred HHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCC
Q 045069 361 IQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439 (554)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 439 (554)
.+.+......+...+..+...+...|++++|...|++..+ ..| +...+..+...+...|++++|...++++...
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--- 180 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--- 180 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---
Confidence 3333333333445566677788889999999999999988 445 4557888899999999999999999998663
Q ss_pred CCChhHHHH-HHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhHHH
Q 045069 440 QAKTEHYIY-MVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK--GAYKVM 514 (554)
Q Consensus 440 ~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~ 514 (554)
.|+...... ....+...++.++|++.+++.. .+.+...+..+...+...|++++|+..++++++.+|++ ...+..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 455443332 3334667788888888888764 46788899999999999999999999999999999988 889999
Q ss_pred HHHHHHccCChhHHHHHHHHHhh
Q 045069 515 LSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 515 l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++.++...|+.++|...+++.+.
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999988764
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=2.5e-10 Score=92.37 Aligned_cols=126 Identities=16% Similarity=0.037 Sum_probs=105.8
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQA-KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG 489 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 489 (554)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|++.+++.. .+.++.+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556677899999999988754 333 35556788999999999999999999974 4778999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHH-HHHHhhcCCc
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKL-RDDIVDNGLR 541 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~ 541 (554)
++++|+..|+++++.+|+++..+..++.+|.+.|++++|.+. ++++++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999887765 5888876543
No 98
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=4.8e-09 Score=95.02 Aligned_cols=203 Identities=11% Similarity=0.067 Sum_probs=110.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHhccCCcchhHHHHHHHHHhc-------
Q 045069 271 LVTWSALITGYSQQGDYGKALYYFRKLNMQ------GKKA-DPVLIASVLAAAAKSANVWPGAVIHGYVIQHG------- 336 (554)
Q Consensus 271 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------- 336 (554)
..++..+...+...|++++|...+++..+. +..| ...++..+...+...|++++|...+++..+..
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 345666677777777777777777766543 1111 22344444555555555555555555443320
Q ss_pred CCchHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHc------CCCCC-HHH
Q 045069 337 FELSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEK------GLNPD-EST 409 (554)
Q Consensus 337 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~ 409 (554)
.+.... ++..+...+...|++++|...++++.+. +-.|+ ..+
T Consensus 123 ~~~~~~-------------------------------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 123 HPDVAK-------------------------------QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp CHHHHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred ChHHHH-------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 011222 3444555555566666666666665542 11232 236
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHh------CCCC-ChhHHHHHHHHHHhc------CChHHHHHHHHhCCC--CCC
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEY------GIQA-KTEHYIYMVKLLGLA------GNLEEAYSFIWSLPK--PVD 474 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~--~~~ 474 (554)
+..+...+...|++++|...+++..+.. ...+ ....+..+...+... ..+.++...++.... +..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7777778888888888888888776520 1122 223333333333332 234444444544432 234
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 475 PAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
..++..+...+...|++++|...++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556788888999999999999999988764
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=6.5e-10 Score=113.87 Aligned_cols=168 Identities=11% Similarity=-0.028 Sum_probs=120.8
Q ss_pred HccCChHHHHHHHhccC-----------CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhc
Q 045069 352 SKCGYLGLGIQVFETMS-----------ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCH 419 (554)
Q Consensus 352 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 419 (554)
...|++++|++.+++.. ..+...+..+...+...|++++|+..|+++.+. .| +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 56677777777777654 234456777777777888888888888887773 34 34567777777778
Q ss_pred CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHH
Q 045069 420 GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIV 497 (554)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 497 (554)
.|++++|...|++..+. -+.+...+..+..+|.+.|++++ ++.++++. .+.+...+..+..++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887763 33456777777888888888888 77777753 355667777788888888888888888
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 498 AHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 498 ~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
|+++++.+|++...+..++.++...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888777766554
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.04 E-value=2.8e-09 Score=107.28 Aligned_cols=159 Identities=11% Similarity=0.019 Sum_probs=118.8
Q ss_pred cCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHH
Q 045069 354 CGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREI 429 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 429 (554)
.|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+ ..|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4778889998888774 3456788888889999999999999999888 4454 56788888889999999999999
Q ss_pred HHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 045069 430 FTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY---GNSDLAEIVAHQLFEN 504 (554)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~ 504 (554)
+++..+. .+.+...+..+..+|.+.|++++|.+.+++.. .+.+...+..+..++... |+.++|.+.++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998874 34457788889999999999999999998864 355677888888888888 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 045069 505 DPRKGAYKVMLS 516 (554)
Q Consensus 505 ~p~~~~~~~~l~ 516 (554)
+|.+...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998888887775
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=6.9e-09 Score=81.97 Aligned_cols=131 Identities=17% Similarity=0.145 Sum_probs=103.4
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45667777888888888888888887753 235567777888888888888888888888773 345567778888888
Q ss_pred HhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 454 GLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
...|++++|.++++++. .+.+...+..++..+...|++++|...++++.+.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88899999988888764 2456777888888899999999999999999888775
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=2.3e-09 Score=89.50 Aligned_cols=158 Identities=11% Similarity=0.015 Sum_probs=110.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH-
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL- 452 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 452 (554)
+..+...+...|++++|...+++..+ ..| +...+..+...+...|++++|...+++.... .|+...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHH
Confidence 44455566667777777777777665 233 3446667777777777777777777776553 2233333222212
Q ss_pred HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--chhHHHHHHHHHccCChhHH
Q 045069 453 LGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK--GAYKVMLSNTYAEDGRWDDV 528 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A 528 (554)
+...+...+|++.+++.. .|.++..+..+..++...|++++|...++++++.+|+. +..+..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 112223334566666643 35578888899999999999999999999999999875 56899999999999999999
Q ss_pred HHHHHHHhh
Q 045069 529 MKLRDDIVD 537 (554)
Q Consensus 529 ~~~~~~~~~ 537 (554)
...+++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.01 E-value=1.2e-09 Score=87.88 Aligned_cols=98 Identities=10% Similarity=-0.095 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..+...+.+.|++++|++.|+++. .|.++..|..+..++...|++++|+..|+++++.+|+++..+..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 5566777778888888888888888764 46678888889999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhcCC
Q 045069 521 EDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|++.|+++++...
T Consensus 116 ~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999987654
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.98 E-value=2.2e-09 Score=109.94 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=136.6
Q ss_pred HcCCChHHHHHHHHHHH--------HcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 383 GLHGFTYQAFEFFRDII--------EKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~--------~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
...|++++|++.+++.. + ..|+ ...+..+..++...|++++|...|++..+. -+.+...+..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 78899999999999998 4 3444 457888899999999999999999999884 455678899999999
Q ss_pred HhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHH
Q 045069 454 GLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKL 531 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 531 (554)
...|++++|++.|+++. .+.+...+..+..++...|++++ ++.|+++++.+|+++..+..++.+|.+.|++++|++.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999964 36678889999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHhhcCC
Q 045069 532 RDDIVDNGL 540 (554)
Q Consensus 532 ~~~~~~~~~ 540 (554)
++++++.++
T Consensus 557 ~~~al~l~P 565 (681)
T 2pzi_A 557 LDEVPPTSR 565 (681)
T ss_dssp HHTSCTTST
T ss_pred HHhhcccCc
Confidence 999887654
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.97 E-value=4.4e-09 Score=81.99 Aligned_cols=107 Identities=8% Similarity=-0.092 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+......+.+.|++++|+..|++..+. -+.+...|..+..+|.+.|++++|++.+++.. .+.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555555666666666666666665552 23345555555555555566666555555542 2444555555555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
..|++++|++.|+++++.+|+++.++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 5555555555555555555555555555543
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.96 E-value=6.6e-09 Score=80.96 Aligned_cols=103 Identities=9% Similarity=-0.008 Sum_probs=92.6
Q ss_pred CCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 439 IQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 439 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
+.|+ ...+...+..|.+.|++++|++.|++.. .+.++..|..+..++...|++++|+..++++++.+|+++..+..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 4567788999999999999999999864 467889999999999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 516 SNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+.+|...|++++|++.++++++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999987643
No 107
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=1.2e-08 Score=87.67 Aligned_cols=161 Identities=12% Similarity=0.075 Sum_probs=107.9
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHH----------------HHHHHHcCCChHHHHHHHHHHHHcCCC
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNS----------------VILGLGLHGFTYQAFEFFRDIIEKGLN 404 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~m~~~g~~ 404 (554)
+......+...|++++|...|++..+ | +...|.. +..+|.+.|++++|+..|++.++. .
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 34445566778888888888887763 3 2334555 777788888888888888888873 4
Q ss_pred C-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC--hHHHHHHHHhCCCC-CChhhHHH
Q 045069 405 P-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN--LEEAYSFIWSLPKP-VDPAVSGA 480 (554)
Q Consensus 405 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~-~~~~~~~~ 480 (554)
| +...+..+...+...|++++|...|++..+. -+.+..++..+..+|...|+ .+.+...++....+ |....+..
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 162 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR 162 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5 4557777888888888888888888888773 34456777777777765543 34455566555432 22223444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
...++...|++++|+..|+++++.+|++
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 5566667788888888888888888863
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.93 E-value=2.9e-08 Score=85.66 Aligned_cols=129 Identities=10% Similarity=-0.079 Sum_probs=99.0
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
.+..+...+...|++++|+..|++. +.|+...+..+...+...|++++|...+++..+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 3455666777888888888888776 4567778888888888888888888888888773 345567788888888
Q ss_pred HhcCChHHHHHHHHhCCC--CCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 045069 454 GLAGNLEEAYSFIWSLPK--PVDP----------------AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK 508 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~--~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 508 (554)
...|++++|++.+++... +.+. ..+..+..++...|++++|...++++.+..|.+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888877531 2222 667777888888888888888888888888876
No 109
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=6.7e-08 Score=88.09 Aligned_cols=159 Identities=6% Similarity=-0.072 Sum_probs=119.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCC-CC----hhHHH
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGL-NPDES----TFSALLCACCHGGLVNDGREIFTRMTEEYGIQ-AK----TEHYI 447 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~~~~ 447 (554)
.+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...+++..+. ... ++ ..+++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~-~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ-QLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT-CCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-hcccccHHHHHHHHH
Confidence 46677888899999999988877321 22211 2334666677788999999999988773 222 22 23688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------C--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CchhH
Q 045069 448 YMVKLLGLAGNLEEAYSFIWSLP-------K--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR------KGAYK 512 (554)
Q Consensus 448 ~l~~~~~~~g~~~~A~~~~~~~~-------~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~ 512 (554)
.++.+|...|++++|+.+++++. . +....++..++.+|...|++++|+..++++++..+. -..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88889999999999998888754 1 112346788889999999999999999999987432 26788
Q ss_pred HHHHHHHHccCC-hhHHHHHHHHHhh
Q 045069 513 VMLSNTYAEDGR-WDDVMKLRDDIVD 537 (554)
Q Consensus 513 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 537 (554)
..++.+|.+.|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999999875
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.92 E-value=2.3e-09 Score=86.35 Aligned_cols=96 Identities=15% Similarity=0.009 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..+...+.+.|++++|+..|+++. .+.++..|..+..++...|++++|+..++++++.+|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 3344445555555555555555555542 24455555555555666666666666666666666666666666666666
Q ss_pred ccCChhHHHHHHHHHhhc
Q 045069 521 EDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~ 538 (554)
..|++++|++.++++++.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666665543
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.91 E-value=1.2e-06 Score=85.58 Aligned_cols=367 Identities=11% Similarity=-0.033 Sum_probs=196.2
Q ss_pred cC-ChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCC-HhHHH
Q 045069 82 AH-RFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSL-IDEAI 159 (554)
Q Consensus 82 ~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~ 159 (554)
.| ++..|..+|+.+... -|. |+++.+..+|+..+.. .|+...|...+.-..+.+. .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377788888887764 333 7888888888888774 3677788777776655542 23344
Q ss_pred HhhcccCC------CCcchHHHHHHHHH----hCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcc---cCCccchhhH
Q 045069 160 KVFDGVSD------PDLVLCNSMISGFA----HCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLW---EPSLLSVGQG 226 (554)
Q Consensus 160 ~~~~~~~~------~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~ 226 (554)
.+|+.... .+...|...+..+. ..++.+.+..+|++.... |.. .+..+-..|. ...+...+..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHhccccHHH
Confidence 44444321 34455666665433 235567777788877753 211 1111111111 0011111111
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc----CCCChhhHHHHHHHHHhcC--C-----HHHHHHHHH
Q 045069 227 IHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL----FHPDLVTWSALITGYSQQG--D-----YGKALYYFR 295 (554)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g--~-----~~~a~~~~~ 295 (554)
+.... .+.+..|..+++.. ...+...|...+.--...+ - .+++..+|+
T Consensus 145 ~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye 203 (493)
T 2uy1_A 145 IVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHN 203 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHH
Confidence 11110 01112222222221 0112334444443322211 0 234556666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHH-HHHHhccC------
Q 045069 296 KLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLG-IQVFETMS------ 368 (554)
Q Consensus 296 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~------ 368 (554)
++.... +.+...+...+.-+...|+.+.|..+++..... +.+...+.. |....+.++. ..+.+...
T Consensus 204 ~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~ 276 (493)
T 2uy1_A 204 YILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAES 276 (493)
T ss_dssp HHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC------
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccch
Confidence 666542 334555655666666677777777777777766 333332222 1111111111 11111110
Q ss_pred ------CCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCchHHHHHHHHHhHHHhCCCC
Q 045069 369 ------ERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH-GGLVNDGREIFTRMTEEYGIQA 441 (554)
Q Consensus 369 ------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 441 (554)
......|...+....+.++.+.|..+|++. +. ..++...|......-.. .++.+.|..+|+...+. .+.
T Consensus 277 ~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~ 352 (493)
T 2uy1_A 277 AEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPD 352 (493)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTT
T ss_pred hhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCC
Confidence 001234566666666778899999999988 32 12344444322221112 33689999999999885 333
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..++++..+.
T Consensus 353 ~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 353 STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45556667787788899999999999984 25677777777777889999998888888753
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.91 E-value=1e-08 Score=94.15 Aligned_cols=218 Identities=10% Similarity=-0.007 Sum_probs=152.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-cCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHH
Q 045069 284 QGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK-SANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQ 362 (554)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 362 (554)
.|++++|.+++++..+.... .+.. .++++.|...+... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 56778888888877643211 1222 45666666655543 456778899999998
Q ss_pred HHhccCC-----CC----cchHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhcCCchHHHHH
Q 045069 363 VFETMSE-----RN----IITYNSVILGLGLHGFTYQAFEFFRDIIEKG---LNPD--ESTFSALLCACCHGGLVNDGRE 428 (554)
Q Consensus 363 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~ 428 (554)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887652 11 3478888889999999999999999887631 1122 2467788888888 99999999
Q ss_pred HHHHhHHHhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCCC----CCC----hhhHHHHHHHHHhcCChHHHHH
Q 045069 429 IFTRMTEEYGIQA----KTEHYIYMVKLLGLAGNLEEAYSFIWSLPK----PVD----PAVSGALLSCCHIYGNSDLAEI 496 (554)
Q Consensus 429 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~A~~ 496 (554)
.|++..+-..-.. ...++..+...|.+.|++++|++.+++... .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998876311111 145778889999999999999999988642 111 2255666677778899999999
Q ss_pred HHHHHHhcCCCCchhH-----HHHHHHHHccCChhHHHH
Q 045069 497 VAHQLFENDPRKGAYK-----VMLSNTYAEDGRWDDVMK 530 (554)
Q Consensus 497 ~~~~~~~~~p~~~~~~-----~~l~~~~~~~g~~~~A~~ 530 (554)
.+++++ ..|...... ..++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 888766542 2344444 5677766666
No 113
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=3.6e-08 Score=85.88 Aligned_cols=185 Identities=14% Similarity=-0.018 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHccCChHHHHHHHhccCC--CCcc----hHH
Q 045069 305 DPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFEL--SVMVSSALVDMYSKCGYLGLGIQVFETMSE--RNII----TYN 376 (554)
Q Consensus 305 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~ 376 (554)
+...+......+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34556667778899999999999999999864321 246788889999999999999999998773 4432 344
Q ss_pred HHHHHHHc------------------CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHh
Q 045069 377 SVILGLGL------------------HGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEY 437 (554)
Q Consensus 377 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 437 (554)
.+..++.. .|++++|+..|+++++ ..|+.. ++..... ...+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHHHH--
Confidence 45555543 5789999999999998 456543 2221111 0111111111
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 438 GIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVD---PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 438 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
....+...|.+.|++++|+..++++.. |.+ +..+..+..++.+.|+.++|...++++....|++..
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 224567788899999999999988642 223 256788899999999999999999999998887654
No 114
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.89 E-value=1.1e-08 Score=87.94 Aligned_cols=160 Identities=11% Similarity=0.021 Sum_probs=112.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHHH----------------HHHHHhcCCchHHHHHHHHHhHHHhCC
Q 045069 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFSA----------------LLCACCHGGLVNDGREIFTRMTEEYGI 439 (554)
Q Consensus 377 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~ 439 (554)
.....+...|++++|+..|++..+ ..|+.. .|.. +..++.+.|++++|...|++..+. -
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 84 (208)
T 3urz_A 9 QKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A 84 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C
Confidence 344566778888888888888887 455533 5556 777888888888888888888773 3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 440 QAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGN--SDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
+.+...+..+..++...|++++|++.|++.. .|.++..+..+..++...|+ .+.+...++++....|. ...+..+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~ 163 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRD 163 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHH
Confidence 4467788888888888888888888888864 36677788888877765543 34455566555432222 2345556
Q ss_pred HHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 516 SNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+.++...|++++|+..++++++..+.
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 67777788888888888888876553
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=2.5e-08 Score=90.51 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHH-HHH
Q 045069 405 PDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSG-ALL 482 (554)
Q Consensus 405 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-~l~ 482 (554)
.+...+..+...+...|++++|...|++..+. -+.+...+..+...+.+.|++++|...++++.. .|+..... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 33456778888899999999999999999884 455678899999999999999999999999864 44444333 233
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 483 SCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..+...++.+.|...++++++.+|+++..+..++.+|...|++++|++.++++++..+..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 346778889999999999999999999999999999999999999999999999876544
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.89 E-value=4.4e-07 Score=81.88 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=110.6
Q ss_pred HHHHHHHHHHccC--ChHHHHHHHhccCC--C-CcchHHHHHHHH----HcC---CChHHHHHHHHHHHHcCCCCCHHHH
Q 045069 343 VSSALVDMYSKCG--YLGLGIQVFETMSE--R-NIITYNSVILGL----GLH---GFTYQAFEFFRDIIEKGLNPDESTF 410 (554)
Q Consensus 343 ~~~~l~~~~~~~g--~~~~A~~~~~~~~~--~-~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~ 410 (554)
+|+.--.++...| ++++++++++.+.. | +..+|+.-...+ ... +++++++.+++++.+.. +-+..+|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3343344444444 55555555555442 2 222333322222 223 56667777777776632 2244566
Q ss_pred HHHHHHHhcCCchH--HHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhCC--CCCChhhHHH
Q 045069 411 SALLCACCHGGLVN--DGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN------LEEAYSFIWSLP--KPVDPAVSGA 480 (554)
Q Consensus 411 ~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~--~~~~~~~~~~ 480 (554)
..-...+.+.|.++ ++++.++++.+. -+-+...|+....++.+.|+ ++++++.++++. .+.+...|..
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y 225 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY 225 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence 65555556666666 677777777663 34455566555555555555 666776666643 3556667766
Q ss_pred HHHHHHhcCChH-HHHHHHHHHHhcC---CCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 481 LLSCCHIYGNSD-LAEIVAHQLFEND---PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 481 l~~~~~~~~~~~-~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+...+.+.|+.. .+..+.+++.+.+ |.++..+..++.+|.+.|+.++|+++++++.+
T Consensus 226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 666666666533 3455666665554 66667777777777777777777777777764
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=4.7e-08 Score=98.38 Aligned_cols=151 Identities=14% Similarity=0.022 Sum_probs=89.7
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 045069 386 GFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYS 464 (554)
Q Consensus 386 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 464 (554)
|++++|+..+++..+ ..|+ ...+..+...+...|++++|.+.+++..+. .+.+...+..+...|...|++++|.+
T Consensus 3 g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 566677777776665 3343 446666666777777777777777776552 33345666667777777777777777
Q ss_pred HHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc---CChhHHHHHHHHHhhcC
Q 045069 465 FIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED---GRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 465 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 539 (554)
.+++.. .+.+...+..+..++...|++++|.+.++++.+.+|+++..+..++.++... |++++|.+.++++++.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 776643 2445666667777777777777777777777777777777777777777777 77777777777776654
Q ss_pred C
Q 045069 540 L 540 (554)
Q Consensus 540 ~ 540 (554)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 4
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=1.9e-08 Score=92.37 Aligned_cols=220 Identities=9% Similarity=-0.073 Sum_probs=151.3
Q ss_pred cCChhhHHHHHhhcCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHH
Q 045069 253 CNCMNSAYHVFNSLFHPDLVTWSALITGYSQ-QGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGY 331 (554)
Q Consensus 253 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 331 (554)
.|++++|.+++++..+... ..+.+ .++++.|...|.+. ...+...|+++.|...+.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-------~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-------TSFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------CCSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-------ccccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 4567777777766522110 02233 57888888888765 3467788999999999888
Q ss_pred HHHhc----CC-chHHHHHHHHHHHHccCChHHHHHHHhccCC-------CC--cchHHHHHHHHHcCCChHHHHHHHHH
Q 045069 332 VIQHG----FE-LSVMVSSALVDMYSKCGYLGLGIQVFETMSE-------RN--IITYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 332 ~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
..+.. -. ....+|+.+..+|...|++++|+..|++..+ +. ..++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 76432 11 1245788889999999999999998887542 11 2467788888888 999999999999
Q ss_pred HHHcCCCC-C----HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 398 IIEKGLNP-D----ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 398 m~~~g~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
..+..... + ..++..+...+...|++++|...|++..+...-.++ ...+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88731111 1 346888899999999999999999998763111111 23566677778888999999999988
Q ss_pred CCCCCCh------hhHHHHHHHHHhcCChHHHHH
Q 045069 469 LPKPVDP------AVSGALLSCCHIYGNSDLAEI 496 (554)
Q Consensus 469 ~~~~~~~------~~~~~l~~~~~~~~~~~~A~~ 496 (554)
....|+. .....++.++ ..|+.+.+..
T Consensus 221 al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 221 SYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 5432211 1233444444 5677666555
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.86 E-value=9.1e-09 Score=85.94 Aligned_cols=125 Identities=9% Similarity=-0.005 Sum_probs=63.8
Q ss_pred HcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH-HHhcCCh--
Q 045069 383 GLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL-LGLAGNL-- 459 (554)
Q Consensus 383 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 459 (554)
...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34455666666666655531 223445555666666666666666666665552 22334445555555 4455555
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
++|.+.++++. .+.+...+..+...+...|++++|...++++++..|+++.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 55555555542 2334445555555555555555555555555555555543
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.85 E-value=4.2e-08 Score=80.73 Aligned_cols=127 Identities=6% Similarity=-0.112 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+..+...+...|++++|...|++..+. .+.+..++..++..+...|++++|.+.+++.. .+.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4556666777788888888888887763 34456777778888888888888888887753 3556778888888999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHH--HHccCChhHHHHHHHHHhh
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNT--YAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 537 (554)
..|++++|...++++.+..|.+...+..+..+ +...|++++|++.+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998887555444 7888999999999988754
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=4.6e-08 Score=89.19 Aligned_cols=163 Identities=7% Similarity=-0.101 Sum_probs=109.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCchHHHHHHHHHhHHHhC--CCCC--hhH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE-----STFSALLCACCHGGLVNDGREIFTRMTEEYG--IQAK--TEH 445 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~ 445 (554)
+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++..+... ..+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334555667777777777777777664221111 1233455556677788888888877764211 1111 346
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------Cch
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLP----KPVD-----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR------KGA 510 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~ 510 (554)
++.++..|...|++++|+..++++. ..++ ..++..++.+|...|++++|+..++++++..+. ...
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7778888888888888888887653 1111 257778888888899999999999888876321 256
Q ss_pred hHHHHHHHHHccCChhHH-HHHHHHHhh
Q 045069 511 YKVMLSNTYAEDGRWDDV-MKLRDDIVD 537 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 537 (554)
++..++.+|.+.|++++| ..++++...
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788889999999999999 777887654
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=1.7e-08 Score=84.18 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=106.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHH-HHh
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSC-CHI 487 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~-~~~ 487 (554)
+......+...|++++|...|++..+. -+.+...+..+..++...|++++|+..++++.. .|++..+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence 445667788999999999999998773 345678899999999999999999999999763 3344433332222 223
Q ss_pred cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccC
Q 045069 488 YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 488 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 543 (554)
.++...|+..++++++.+|+++..+..++.++...|++++|.+.++++++..+...
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 142 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQ 142 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC
Confidence 33445689999999999999999999999999999999999999999998876543
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=1.3e-07 Score=81.57 Aligned_cols=126 Identities=5% Similarity=-0.100 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 045069 342 MVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGG 421 (554)
Q Consensus 342 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 421 (554)
..+..+...+...|++++|...|++...++...|..+...+...|++++|+..+++..+.. +.+...+..+...+...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3455677778888999999999998888888888889999999999999999999988853 334567888888899999
Q ss_pred chHHHHHHHHHhHHHhCCCCCh----------------hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 422 LVNDGREIFTRMTEEYGIQAKT----------------EHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
++++|...|++..+. .+.+. ..+..+..+|...|++++|.+.+++..
T Consensus 86 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999988873 23323 678888888999999999999988854
No 124
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=7.2e-08 Score=75.84 Aligned_cols=115 Identities=8% Similarity=-0.101 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC 485 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 485 (554)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|++.+++.. .+.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 35566666666666666666666666542 23345566666666666666666666666543 244566777777778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
...|++++|...++++.+..|.+...+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888777776653
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=4.5e-07 Score=77.95 Aligned_cols=173 Identities=8% Similarity=-0.109 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC-CCcchHHHHHHHHHcCC----ChHHHHHHHHHH
Q 045069 324 PGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE-RNIITYNSVILGLGLHG----FTYQAFEFFRDI 398 (554)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m 398 (554)
+|...|+...+.| ++..+..+...|...+++++|...|++..+ .+...+..|...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4555666666554 455566667777777788888877776653 455566667777766 5 788888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHhc----CCchHHHHHHHHHhHHHhCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHH
Q 045069 399 IEKGLNPDESTFSALLCACCH----GGLVNDGREIFTRMTEEYGIQAK---TEHYIYMVKLLGL----AGNLEEAYSFIW 467 (554)
Q Consensus 399 ~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~ 467 (554)
.+.| +..++..+...|.. .+++++|..+|++..+. .|+ +..+..|...|.. .+++++|+++++
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7754 56677777777776 78899999999888663 332 6778888888887 778999999998
Q ss_pred hCCC-CCChhhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcCC
Q 045069 468 SLPK-PVDPAVSGALLSCCHIY-G-----NSDLAEIVAHQLFENDP 506 (554)
Q Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 506 (554)
+... +.++..+..|...|... | +.++|...++++.+...
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8643 35666777777777653 3 88999999999888743
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.78 E-value=7.8e-08 Score=75.29 Aligned_cols=117 Identities=12% Similarity=-0.026 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC 485 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 485 (554)
..+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|.+.+++.. .+.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35666667777778888888888877763 34456677777777888888888888777753 345677788888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 526 (554)
...|++++|...++++.+..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999998888888753
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.77 E-value=1.3e-07 Score=73.33 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC 485 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 485 (554)
..+..+...+...|++++|...++++.+. .+.+...+..++..+.+.|++++|..+++++. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666666777777777777777777663 33456666777777777777777777776653 245666777788888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
...|++++|...++++.+..|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888888888877776544
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.77 E-value=5.6e-08 Score=77.62 Aligned_cols=93 Identities=13% Similarity=-0.070 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG 523 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 523 (554)
+..+...+.+.|++++|++.|+++. .+.+...|..+..++...|++++|+..++++++.+|+++..+..++.+|...|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3344444555555555555555432 23345555555555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHhhc
Q 045069 524 RWDDVMKLRDDIVDN 538 (554)
Q Consensus 524 ~~~~A~~~~~~~~~~ 538 (554)
++++|.+.++++++.
T Consensus 101 ~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 101 DLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555543
No 129
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.76 E-value=6e-08 Score=73.57 Aligned_cols=102 Identities=10% Similarity=-0.102 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CchhHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPR--KGAYKVMLSN 517 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 517 (554)
+...+..+...+...|++++|...+++.. .+.+...+..+..++...|++++|...++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556667777778888888888887753 3556777888888999999999999999999999999 9999999999
Q ss_pred HHHcc-CChhHHHHHHHHHhhcCCccC
Q 045069 518 TYAED-GRWDDVMKLRDDIVDNGLRKE 543 (554)
Q Consensus 518 ~~~~~-g~~~~A~~~~~~~~~~~~~~~ 543 (554)
++... |++++|.+.++++.+..+..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999988766443
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.76 E-value=1.2e-08 Score=92.27 Aligned_cols=188 Identities=10% Similarity=-0.058 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC--C-CcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE--R-NIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCA 416 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~ 416 (554)
...+..+...+.+.|++++|...|++..+ | +...|..+..+|.+.|++++|...+++..+ ..|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 44566667777777888888888776652 3 556777788888888888888888888877 4454 4577788888
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQA---KTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDL 493 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 493 (554)
+...|++++|...|++..+...-.+ ....+..+ ...+...+.. ......+.+......+.. + ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 8888888888888888765310000 11111111 1122222222 222233444444444432 2 3689999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHcc-CChhHHHHHHHHHhhc
Q 045069 494 AEIVAHQLFENDPRKGAYKVMLSNTYAED-GRWDDVMKLRDDIVDN 538 (554)
Q Consensus 494 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 538 (554)
|.+.++++.+.+|++......+...+.+. +.+++|.++|+++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999888888887777776 7899999999988764
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=6e-08 Score=75.63 Aligned_cols=95 Identities=9% Similarity=-0.073 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
.+..+...+.+.|++++|++.+++.. .+.+...+..+..++...|++++|+..++++++.+|+++..+..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 34445555556666666666665542 2445566666666666666666666666666666666666666666666666
Q ss_pred CChhHHHHHHHHHhhcC
Q 045069 523 GRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 523 g~~~~A~~~~~~~~~~~ 539 (554)
|++++|.+.++++++..
T Consensus 86 ~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 86 KEYASALETLDAARTKD 102 (126)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhC
Confidence 77777776666666543
No 132
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.74 E-value=6.2e-06 Score=74.39 Aligned_cols=224 Identities=8% Similarity=-0.009 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhccC--CcchhHHHHHHHHHhcCCchHHHHHHHHHHH----Hcc---CCh
Q 045069 288 GKALYYFRKLNMQGKKADP-VLIASVLAAAAKSA--NVWPGAVIHGYVIQHGFELSVMVSSALVDMY----SKC---GYL 357 (554)
Q Consensus 288 ~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 357 (554)
++|+.++..+... .|+. ..++.--.++...| ++++++..++.+.... +-+..+|+.-...+ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4566666555543 2332 23344344444444 5666666666665544 22333333333333 333 677
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHcCCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc------hHHH
Q 045069 358 GLGIQVFETMSE---RNIITYNSVILGLGLHGFTY--QAFEFFRDIIEKGLNPDESTFSALLCACCHGGL------VNDG 426 (554)
Q Consensus 358 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~~~a 426 (554)
++++.+++.+.+ .+..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.-...+...+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 888888887764 34556666666677777777 9999999999854 2356677777666777776 8899
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEE-AYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQ 500 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 500 (554)
++.++++... .+-|...|+.+...+.+.|+..+ +..+..+... +.++..+..++..+.+.|+.++|.++++.
T Consensus 206 l~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999998874 56678888888888888887554 5556666542 45778888999999999999999999999
Q ss_pred HHh-cCCCCchhHHHHHH
Q 045069 501 LFE-NDPRKGAYKVMLSN 517 (554)
Q Consensus 501 ~~~-~~p~~~~~~~~l~~ 517 (554)
+.+ .+|.+..++...+.
T Consensus 284 l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHTTCGGGHHHHHHHHH
T ss_pred HHhccChHHHHHHHHHHh
Confidence 997 69998888876653
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.74 E-value=1.2e-07 Score=76.17 Aligned_cols=105 Identities=7% Similarity=-0.028 Sum_probs=90.4
Q ss_pred CCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 045069 403 LNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSG 479 (554)
Q Consensus 403 ~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 479 (554)
+.|+.. .+..+...+.+.|++++|...|++..+. -|.+...|..+..+|...|++++|++.|++.. .|.++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 445443 6778888899999999999999999883 45568888999999999999999999999874 467788999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
.+..++...|++++|+..|+++++..|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998765
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.73 E-value=2.6e-08 Score=80.09 Aligned_cols=118 Identities=12% Similarity=0.058 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 045069 394 FFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP-- 470 (554)
Q Consensus 394 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 470 (554)
.++++.+ +.|+. ..+..+...+...|++++|...|++.... -+.+...+..+..+|...|++++|++.++++.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3444444 44543 35677778888899999999999998773 45567788888899999999999999998864
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.+.++..+..+..++...|++++|+..|+++++..|+++......
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 366788888999999999999999999999999999887765443
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.73 E-value=4.2e-08 Score=75.71 Aligned_cols=96 Identities=14% Similarity=-0.040 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
.+..+...+.+.|++++|+..+++.. .+.+...|..+..++...|++++|+..++++++.+|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556777888999999999998864 3668888999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhcCC
Q 045069 523 GRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 523 g~~~~A~~~~~~~~~~~~ 540 (554)
|++++|++.++++++..+
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999999987654
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.72 E-value=9.2e-08 Score=88.85 Aligned_cols=94 Identities=11% Similarity=-0.070 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..+..+|.+.|++++|++.++++. .+.+...+..+..++...|++++|+..|+++++.+|++..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3567777788888888888888887754 35677888889999999999999999999999999999999999999999
Q ss_pred ccCChhHH-HHHHHHHh
Q 045069 521 EDGRWDDV-MKLRDDIV 536 (554)
Q Consensus 521 ~~g~~~~A-~~~~~~~~ 536 (554)
+.|++++| .+.+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 45666654
No 137
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.69 E-value=9.1e-08 Score=78.61 Aligned_cols=108 Identities=10% Similarity=-0.054 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSC 484 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 484 (554)
...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|+..+++.. .+.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 446788888899999999999999999874 34567888899999999999999999998864 36678888899999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
+...|++++|...++++++.+|++...+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999888655543
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.68 E-value=1.5e-07 Score=82.92 Aligned_cols=133 Identities=11% Similarity=-0.090 Sum_probs=61.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC--hhHHHHHHHHHHh
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK--TEHYIYMVKLLGL 455 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 455 (554)
....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHH
Confidence 334455555555555555555442 233333333333455555555555555533220 0 110 1234445555555
Q ss_pred cCChHHHHHHHHhCCCC---C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 456 AGNLEEAYSFIWSLPKP---V--DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.|++++|++.|++.... | ..........++.+.|+.++|...|+++...+|+ +.+...|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 55555555555554211 1 1223444444555555555555555555555555 4433333
No 139
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.67 E-value=1.2e-05 Score=78.51 Aligned_cols=81 Identities=12% Similarity=0.012 Sum_probs=43.5
Q ss_pred CCchhHHHHhccCC--CCCcchHHHHHHHHHhcCC-hHHHHHHHHHhHHc-CCCC-CcccHHHHHHHhhc----CCChhh
Q 045069 52 NVLPSARILFDKTP--QRSVFLWNSIIRAYALAHR-FNDAKSLFKNLLRT-QLKP-DNFTYACITRACSE----NSDLPG 122 (554)
Q Consensus 52 ~~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~~~~~----~~~~~~ 122 (554)
|+++.+..+|++.. .|++..|...+....+.++ .+....+|+..... |..| +...|...+..+.. .++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 56677777776543 3566666666665555542 34455666665554 3222 33445555544332 345566
Q ss_pred HHHHHHHHHH
Q 045069 123 LRFVHGGAIV 132 (554)
Q Consensus 123 a~~~~~~~~~ 132 (554)
+..+|+..+.
T Consensus 108 vR~iy~rAL~ 117 (493)
T 2uy1_A 108 IRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 6667666665
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.67 E-value=2.2e-07 Score=73.57 Aligned_cols=98 Identities=11% Similarity=0.007 Sum_probs=59.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+...+..+...+...|++++|+..+++.. .+.+...+..+..++...|++++|...++++++.+|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34455555555555555555555555532 2344555666666666666666666666666666666666666666666
Q ss_pred HccCChhHHHHHHHHHhhcC
Q 045069 520 AEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~ 539 (554)
...|++++|++.++++++..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHC
Confidence 66666666666666666543
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.66 E-value=2e-06 Score=78.17 Aligned_cols=159 Identities=11% Similarity=-0.060 Sum_probs=119.0
Q ss_pred HHHHHHHccCChHHHHHHHhccCCC-----Cc----chHHHHHHHHHcCCChHHHHHHHHHHHHcCCC-CC----HHHHH
Q 045069 346 ALVDMYSKCGYLGLGIQVFETMSER-----NI----ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLN-PD----ESTFS 411 (554)
Q Consensus 346 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~ 411 (554)
..+..+...|++++|...+++..+. +. ..+..+...+...|++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3466788889999999999876531 11 12334666677788999999999999884222 22 23688
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHh----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhCCC--------CCChhhH
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEY----GIQAK-TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--------PVDPAVS 478 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 478 (554)
.+...|...|++++|...|+++.+.. +..+. ..++..++..|.+.|++++|++++++... ..-..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999987521 11111 34778899999999999999999887531 1226678
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHhc
Q 045069 479 GALLSCCHIYGN-SDLAEIVAHQLFEN 504 (554)
Q Consensus 479 ~~l~~~~~~~~~-~~~A~~~~~~~~~~ 504 (554)
..++.++...|+ +++|...+++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 889999999995 69999999998865
No 142
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=8.2e-08 Score=74.84 Aligned_cols=94 Identities=5% Similarity=-0.101 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-------hhHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG-------AYKVML 515 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-------~~~~~l 515 (554)
.+..++..+.+.|++++|++.|++.. .|.+...|..+..+|...|++++|+..++++++.+|++. .++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34455555666666666666665542 244556666666666666777777777777666655443 245556
Q ss_pred HHHHHccCChhHHHHHHHHHhhc
Q 045069 516 SNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+.++...|++++|++.+++.++.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666777777777777776654
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.64 E-value=1.8e-07 Score=73.44 Aligned_cols=102 Identities=10% Similarity=-0.029 Sum_probs=91.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHH
Q 045069 440 QAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSN 517 (554)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 517 (554)
+.+...+..++..+.+.|++++|.+.+++.. .+.+...+..+..++...|++++|...++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3346778889999999999999999999864 35578889999999999999999999999999999999999999999
Q ss_pred HHHccCChhHHHHHHHHHhhcCCc
Q 045069 518 TYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 518 ~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
++.+.|++++|.+.++++.+....
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~ 116 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS 116 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999999886543
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.64 E-value=3.1e-07 Score=80.80 Aligned_cols=127 Identities=13% Similarity=-0.037 Sum_probs=74.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh----hhHHHHHHHHH
Q 045069 411 SALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDP----AVSGALLSCCH 486 (554)
Q Consensus 411 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~ 486 (554)
..+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....+++ ..+..+..++.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 33444556666777777777666441 233224445555666667777777777654433222 24556666666
Q ss_pred hcCChHHHHHHHHHHHhcC--CC-CchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 487 IYGNSDLAEIVAHQLFEND--PR-KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++....+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7777777777777666432 33 334556666667777777777777776666544
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=3.1e-07 Score=70.27 Aligned_cols=106 Identities=10% Similarity=0.007 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|...+++.. .+.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4445555555566666666666655542 22344445555555555555555555554432 1333444455555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
..|++++|...++++.+..|+++..+..++
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 555555555555555555555554444443
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=2.9e-07 Score=78.32 Aligned_cols=95 Identities=6% Similarity=-0.098 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc
Q 045069 444 EHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE 521 (554)
Q Consensus 444 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 521 (554)
..+..+..+|.+.|++++|+..+++.. .+.+...+..+..++...|++++|...++++++..|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 566777778888888888888887754 356777888899999999999999999999999999999999999999999
Q ss_pred cCChhHHH-HHHHHHhhc
Q 045069 522 DGRWDDVM-KLRDDIVDN 538 (554)
Q Consensus 522 ~g~~~~A~-~~~~~~~~~ 538 (554)
.|+.+++. ..+..+...
T Consensus 169 ~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHC------------
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 88888887 556655543
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=6.2e-07 Score=68.52 Aligned_cols=98 Identities=9% Similarity=0.008 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..++..+...|++++|.+.+++.. .+.+...+..+..++...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566778888888999999999988864 35577888888888889999999999999999999998889999999999
Q ss_pred ccCChhHHHHHHHHHhhcCC
Q 045069 521 EDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|.+.+++..+.++
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HHhhHHHHHHHHHHHHHcCC
Confidence 99999999999998887654
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=2.3e-07 Score=77.29 Aligned_cols=124 Identities=6% Similarity=0.037 Sum_probs=101.7
Q ss_pred HhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHH-HHhcCCh--
Q 045069 417 CCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSC-CHIYGNS-- 491 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~-~~~~~~~-- 491 (554)
+...|++++|...+++..+. .+.+...+..+...|...|++++|...++++. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678889999999988774 45567888999999999999999999998864 25577788888888 7788998
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 492 DLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 492 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
++|...++++++.+|+++..+..++.+|...|++++|.+.++++++..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999998876544
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.59 E-value=5.4e-07 Score=76.84 Aligned_cols=153 Identities=10% Similarity=-0.019 Sum_probs=78.0
Q ss_pred cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHh---CCCC-ChhHHHHHHHHHHhcCCh
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEY---GIQA-KTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 459 (554)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+.. +.+| ...++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 11122345555555555555555555555544411 1111 133445555555666666
Q ss_pred HHHHHHHHhCCC----CC-C----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC----chhHHHHHHHHHccCC
Q 045069 460 EEAYSFIWSLPK----PV-D----PAVSGALLSCCHIYGNSDLAEIVAHQLFEND--PRK----GAYKVMLSNTYAEDGR 524 (554)
Q Consensus 460 ~~A~~~~~~~~~----~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~ 524 (554)
++|.+.+++... .+ + ...+..+...+...|++++|...++++.+.. ..+ ...+..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 666655554320 11 1 2335556666666777777777777766542 111 1234667777777777
Q ss_pred hhHHHHHHHHHhh
Q 045069 525 WDDVMKLRDDIVD 537 (554)
Q Consensus 525 ~~~A~~~~~~~~~ 537 (554)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777664
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.58 E-value=2.9e-07 Score=73.41 Aligned_cols=106 Identities=15% Similarity=0.039 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+..+...+.+.|++++|...|++.... -+.+...+..+..+|.+.|++++|+..+++.. .+.++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556666777888888888888888773 34467777888888888888888888888764 3667778888888999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
..|++++|...++++++..|+++.......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 999999999999999999888877665544
No 151
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=5.3e-07 Score=69.71 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=89.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..++..+...|++++|.+.++++. .+.+...+..+...+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678888999999999999999999864 35677888999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHhhcCC
Q 045069 521 EDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 521 ~~g~~~~A~~~~~~~~~~~~ 540 (554)
..|++++|.++++++.+..+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988654
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.58 E-value=5.3e-07 Score=70.14 Aligned_cols=110 Identities=8% Similarity=-0.122 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHH
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCH 486 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (554)
.+..+...+.+.|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++.. .+.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4556666777778888888888777763 34456777777778888888888888777753 3556778888888889
Q ss_pred hcCChHHHHHHHHHHHhcC------CCCchhHHHHHHHHH
Q 045069 487 IYGNSDLAEIVAHQLFEND------PRKGAYKVMLSNTYA 520 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 520 (554)
..|++++|...++++++.+ |.+..+...+..+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999988 888777777765543
No 153
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=2.6e-06 Score=77.47 Aligned_cols=164 Identities=9% Similarity=-0.088 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC--CCc-------chHHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE--RNI-------ITYNSVILGLGLHGFTYQAFEFFRDIIEKG---LNPD-- 406 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~-- 406 (554)
...+...+..+...|++++|.+.++...+ +.. ..+..+...+...|++++|+..+++..+.. ..+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455667778889999999888875442 111 123445566778899999999999988632 1122
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhCCC--------CC
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK-----TEHYIYMVKLLGLAGNLEEAYSFIWSLPK--------PV 473 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~ 473 (554)
..+++.+...|...|++++|...+++..+.....|+ ..++..++..|.+.|++++|++++++... ..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 347888899999999999999999998732111222 25788899999999999999999987531 11
Q ss_pred ChhhHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 045069 474 DPAVSGALLSCCHIYGNSDLA-EIVAHQLFEN 504 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 504 (554)
-..++..+..++...|++++| ...++++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 256778888999999999999 8888888754
No 154
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.54 E-value=4.4e-07 Score=70.90 Aligned_cols=99 Identities=11% Similarity=-0.026 Sum_probs=89.9
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+...+..++..+...|++++|.+.+++.. .+.+...+..+..++...|++++|...++++.+..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999864 3567888999999999999999999999999999999999999999999
Q ss_pred HccCChhHHHHHHHHHhhcCC
Q 045069 520 AEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 520 ~~~g~~~~A~~~~~~~~~~~~ 540 (554)
...|++++|.+.++++.+..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST
T ss_pred HHhCCHHHHHHHHHHHHhcCc
Confidence 999999999999999988754
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=9e-07 Score=70.94 Aligned_cols=111 Identities=10% Similarity=-0.045 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHH
Q 045069 406 DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSG 479 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 479 (554)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|++.+++.. .+.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344566666666677777777777776654 3344 4555666666666666666666665542 233455566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
.+..++...|++++|...++++++.+|++......+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666666555554443
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=2.3e-06 Score=68.51 Aligned_cols=99 Identities=16% Similarity=0.015 Sum_probs=66.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP-KPVD----PAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
+...+..+...+...|++++|.+.+++.. ..|+ ...+..+..++...|++++|+..++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 45566666667777777777777776643 2333 456666666677777777777777777777777777777777
Q ss_pred HHHHccCChhHHHHHHHHHhhcCC
Q 045069 517 NTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 517 ~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.++...|++++|.+.++++++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777777777777777777766543
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=1.1e-06 Score=72.09 Aligned_cols=92 Identities=10% Similarity=-0.095 Sum_probs=43.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNP-DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
.+..+...+...|++++|+..|++.++. .| +...|..+..++...|++++|+..|++..+. .+.+...+..+..+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444444455555555555555555542 22 3334444445555555555555555555442 22234444455555
Q ss_pred HHhcCChHHHHHHHHhC
Q 045069 453 LGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~ 469 (554)
|...|++++|.+.|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555443
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.48 E-value=1.1e-06 Score=68.47 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=55.0
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhCCC--CCC---hhhHHHHHHH
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKT---EHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVD---PAVSGALLSC 484 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~~l~~~ 484 (554)
+...+...|++++|...|+++.+. .+.+. ..+..+..++.+.|++++|...+++... +.+ +..+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 444555666666666666666553 12222 3555555566666666666666655421 222 3445555555
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
+...|++++|...++++++..|+++......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 5666666666666666666666555444433
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.47 E-value=1e-06 Score=69.63 Aligned_cols=112 Identities=9% Similarity=-0.097 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHH
Q 045069 406 DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLS 483 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~ 483 (554)
+...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++.. .+.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556777777777778888888888777663 34456677777777888888888887777753 3556777888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCC-----CchhHHHHHHHH
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPR-----KGAYKVMLSNTY 519 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 519 (554)
++...|++++|+..++++++..|+ +..+...+..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 888888899999999888888776 555555554443
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=3.4e-06 Score=69.02 Aligned_cols=128 Identities=12% Similarity=-0.084 Sum_probs=83.7
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 374 TYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 374 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..++.++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 34555666667777777777777777632 224556777777777777777777777777663 344566777777777
Q ss_pred HhcCChHHHHHHHHhCC--CCCChhhHHHH--HHHHHhcCChHHHHHHHHHHHhc
Q 045069 454 GLAGNLEEAYSFIWSLP--KPVDPAVSGAL--LSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...|++++|.+.+++.. .+.+...+..+ +..+...|++++|...+++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 77778887777777653 23344444333 33366677888888877766543
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.43 E-value=1.3e-06 Score=69.32 Aligned_cols=64 Identities=14% Similarity=0.004 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCchhH----HHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 476 AVSGALLSCCHIYGNSDLAEIVAHQLFEN-------DPRKGAYK----VMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
..|..+..++.+.|++++|+..++++++. +|++...| +..+.++...|++++|++.|++.++..
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 37778888888888888888888888888 99999999 999999999999999999999988643
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=2.2e-06 Score=83.17 Aligned_cols=94 Identities=6% Similarity=-0.012 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...|..+..+|.+.|++++|+..++++. .+.+...+..+..++...|++++|+..|+++++.+|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4567778888888888888888888764 35677888889999999999999999999999999999999999999999
Q ss_pred ccCChhHHHH-HHHHHh
Q 045069 521 EDGRWDDVMK-LRDDIV 536 (554)
Q Consensus 521 ~~g~~~~A~~-~~~~~~ 536 (554)
+.|++++|.+ .+++|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988874 445443
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.43 E-value=1.9e-05 Score=71.99 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=25.3
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
+.++.....|+++|...|+.++|.++++.+.
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4666777888888888888888888888875
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.41 E-value=9.4e-07 Score=72.26 Aligned_cols=102 Identities=12% Similarity=-0.028 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhC----------------CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYG----------------IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP- 470 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 470 (554)
..+......+.+.|++++|...|++...... .+.+...|..+..+|.+.|++++|+..+++..
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3566777778888888888888888766200 01112345555555555555555555555542
Q ss_pred -CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 471 -KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 471 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
.+.+...+..++.++...|++++|...++++++.+|+++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 244455555555555555555555555555555555555
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.40 E-value=1e-06 Score=68.76 Aligned_cols=110 Identities=5% Similarity=-0.127 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--C---CC----hhhH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--P---VD----PAVS 478 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~----~~~~ 478 (554)
..+..+...+...|++++|...+++..+. .+.+...+..++..+...|++++|...+++... + ++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45667777777888888888888887773 344566777777777788888888877776531 1 11 5566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
..+..++...|++++|...++++.+..| ++.....+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 6777777777888888888887777776 4555555554443
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=0.00016 Score=66.00 Aligned_cols=232 Identities=10% Similarity=-0.007 Sum_probs=151.6
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccC-CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc-C-ChH
Q 045069 282 SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSA-NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC-G-YLG 358 (554)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 358 (554)
.+.+..++|+++++++.... +-+...++.--..+...| .+++++.+++.+.... +-+..+|+.-..++... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 34444566777777776553 122333444444444555 4677777777777655 44555666655555555 5 778
Q ss_pred HHHHHHhccCCCCc---chHHHHHHHHHcCCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-----
Q 045069 359 LGIQVFETMSERNI---ITYNSVILGLGLHGFTY--------QAFEFFRDIIEKGLNPDESTFSALLCACCHGGL----- 422 (554)
Q Consensus 359 ~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----- 422 (554)
+++++++.+.+.+. .+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 88888888876443 44544444444444444 8999999999853 3366678887777777775
Q ss_pred --hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhCCC--------C
Q 045069 423 --VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL--------------------EEAYSFIWSLPK--------P 472 (554)
Q Consensus 423 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~--------~ 472 (554)
++++++.+++.... .+-|...|+.+-..+.+.|+. .+..+...++.. .
T Consensus 222 ~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 68888999888873 555677787777777776654 344455555432 3
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHH-hcCCCCchhHHHHHHH
Q 045069 473 VDPAVSGALLSCCHIYGNSDLAEIVAHQLF-ENDPRKGAYKVMLSNT 518 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~l~~~ 518 (554)
+++..+..++..|...|+.++|.++++.+. +.+|....++.-.+..
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 567788889999999999999999999997 4589887777665543
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.40 E-value=3.8e-05 Score=69.72 Aligned_cols=180 Identities=8% Similarity=-0.047 Sum_probs=105.7
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHcCC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc-hHHHHHHH
Q 045069 357 LGLGIQVFETMSE---RNIITYNSVILGLGLHG--FTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGL-VNDGREIF 430 (554)
Q Consensus 357 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 430 (554)
+++++.+++.+.. .+..+|+.-...+...+ .+++++.+++++.+.. +-|..+|+.-...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3445555554442 23344444444444555 3667777777777642 2244566555555556666 46777777
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhc--------------CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhc------
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLA--------------GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIY------ 488 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~------ 488 (554)
+++.+. .+-|...|+.....+.+. +.++++++.+.+.. .|.|...|.-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 777663 344555565555554443 34666777766653 355666665544444433
Q ss_pred -----CChHHHHHHHHHHHhcCCCCchhHHHHHHHH---HccCChhHHHHHHHHHhhcC
Q 045069 489 -----GNSDLAEIVAHQLFENDPRKGAYKVMLSNTY---AEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 489 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 539 (554)
+.++++++.++++++..|++...+..++... ...|..+++...+.++++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3467888888888888888866655554322 24577778888888887654
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.40 E-value=6.5e-07 Score=87.34 Aligned_cols=118 Identities=6% Similarity=-0.110 Sum_probs=92.1
Q ss_pred HHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChH
Q 045069 415 CACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSD 492 (554)
Q Consensus 415 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 492 (554)
..+.+.|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|++.+++.. .+.+...+..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456677888888888887763 34457777888888888888888888887753 3556788888999999999999
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHH--HHccCChhHHHHHHHH
Q 045069 493 LAEIVAHQLFENDPRKGAYKVMLSNT--YAEDGRWDDVMKLRDD 534 (554)
Q Consensus 493 ~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 534 (554)
+|++.++++++..|++...+..++.+ +.+.|++++|++.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999988888 8889999999999983
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.40 E-value=2.2e-07 Score=71.18 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHHhHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHH
Q 045069 420 GGLVNDGREIFTRMTEEYG--IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAE 495 (554)
Q Consensus 420 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 495 (554)
.|++++|+..|++..+. + -+.+...+..+..+|...|++++|++.+++.. .+.++..+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45556666666665441 1 12223445555555555555555555555542 2334445555555555555555555
Q ss_pred HHHHHHHhcCCCCchh
Q 045069 496 IVAHQLFENDPRKGAY 511 (554)
Q Consensus 496 ~~~~~~~~~~p~~~~~ 511 (554)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 5555555555554443
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.39 E-value=7.8e-07 Score=82.60 Aligned_cols=151 Identities=12% Similarity=-0.058 Sum_probs=80.9
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
..+..+...+.+.|++++|+..|++.++ ..|+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3455666677778888888888888776 3454432 223344444332221 1367888889
Q ss_pred HHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH-HccCChhHHH
Q 045069 453 LGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY-AEDGRWDDVM 529 (554)
Q Consensus 453 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 529 (554)
|.+.|++++|+..+++.. .+.+...+..+..++...|++++|+..|+++++.+|+++.++..+..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998864 3567888999999999999999999999999999999999999888774 4567888899
Q ss_pred HHHHHHhhcCCccC
Q 045069 530 KLRDDIVDNGLRKE 543 (554)
Q Consensus 530 ~~~~~~~~~~~~~~ 543 (554)
+.++++....+...
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999887655443
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=6.8e-06 Score=79.47 Aligned_cols=163 Identities=11% Similarity=-0.083 Sum_probs=106.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC-CCCCHH----HHHHHHHHHhcCCchHHHHHHHHHhHHHh---CCCCC-hhH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKG-LNPDES----TFSALLCACCHGGLVNDGREIFTRMTEEY---GIQAK-TEH 445 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~ 445 (554)
+..+...|...|++++|.+++.++.+.- -.++.. ..+.+...+...|+++.|..+++...... +..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556677777777777777777665421 111211 22333334455678888888777765421 22222 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC----ch
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLP--------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND---PRK----GA 510 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~----~~ 510 (554)
+..++..|...|++++|..+++++. .+....++..++..|...|++++|..+++++.... +.. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 6778888888888888888877642 12234466777888888899999998888887762 222 24
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++..++..+...|++++|.+.+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 566677778888999999888887764
No 172
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.38 E-value=2.4e-07 Score=78.84 Aligned_cols=98 Identities=9% Similarity=-0.144 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC----------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVD----------------PAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
...+..+...+.+.|++++|++.+++.. .+.+ ...+..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445556666666777777777666642 1122 267888899999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 505 DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 505 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+|+++..+..++.+|...|++++|++.++++++..+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999987654
No 173
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=2.3e-06 Score=72.86 Aligned_cols=61 Identities=10% Similarity=-0.054 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhcCCchHHHHHHHHHhHH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKG---LNPD--ESTFSALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
+..+...+...|++++|...+++..+.. -.|. ..++..+...+...|++++|.+.+++..+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444445555555555555555544310 0111 12345666666677777777777766655
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=2.4e-06 Score=76.99 Aligned_cols=104 Identities=9% Similarity=-0.094 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHH
Q 045069 406 DESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLS 483 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~ 483 (554)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|++.+++... +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456667777777888888888888887763 334567777777778888888888887777542 456667777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 484 CCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 484 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
++...|++++|+..++++++.+|+++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 7778888888888888877777665433
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=7.1e-06 Score=63.82 Aligned_cols=93 Identities=14% Similarity=0.047 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--CCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---chhHHHHHHH
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLPK--PVDP---AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK---GAYKVMLSNT 518 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 518 (554)
..+...+...|++++|.+.++++.. +.++ ..+..+..++...|++++|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3455667777888888888777532 2233 466677777788888888888888888887777 6667778888
Q ss_pred HHccCChhHHHHHHHHHhhcC
Q 045069 519 YAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 519 ~~~~g~~~~A~~~~~~~~~~~ 539 (554)
+...|++++|.+.++++++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHHC
Confidence 888888888888888877654
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.35 E-value=1.9e-06 Score=67.15 Aligned_cols=94 Identities=7% Similarity=0.074 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------chhHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK-------GAYKVML 515 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l 515 (554)
.+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|...++++.+..|.+ +..+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 34445555555555555555555432 23344455555555555555555555555555554433 4455555
Q ss_pred HHHHHccCChhHHHHHHHHHhhc
Q 045069 516 SNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 516 ~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+.++...|++++|.+.++++.+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555555555555555555543
No 177
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=1.9e-06 Score=66.23 Aligned_cols=96 Identities=13% Similarity=-0.013 Sum_probs=59.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG 489 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 489 (554)
.+...+.+.|++++|...|++..+. -+.+...+..+..++...|++++|+..+++.. .+.+...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444556666666666666666652 33355666666666666677777776666643 2445666777777777778
Q ss_pred ChHHHHHHHHHHHhcCCCCc
Q 045069 490 NSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~ 509 (554)
++++|+..++++++.+|++.
T Consensus 100 ~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHHhCcCCC
Confidence 88888888888877777654
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=4.2e-06 Score=77.62 Aligned_cols=94 Identities=12% Similarity=-0.006 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHH
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCC 485 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 485 (554)
..|..+..++.+.|++++|+..+++..+. .+.+...+..+..+|...|++++|+..|+++. .+.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 45555666666666666666666666552 23345556666666666666666666665543 244555566666666
Q ss_pred HhcCChHHH-HHHHHHHHh
Q 045069 486 HIYGNSDLA-EIVAHQLFE 503 (554)
Q Consensus 486 ~~~~~~~~A-~~~~~~~~~ 503 (554)
...|+.++| ...++++..
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 666666665 334454443
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=2.8e-06 Score=64.02 Aligned_cols=98 Identities=13% Similarity=0.022 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPV--DPAVSGALLSCC 485 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~--~~~~~~~l~~~~ 485 (554)
+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++.. .+. +...+..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 344444555555555555555555542 23334455555555555566666665555532 133 455666666667
Q ss_pred Hhc-CChHHHHHHHHHHHhcCCCCc
Q 045069 486 HIY-GNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 486 ~~~-~~~~~A~~~~~~~~~~~p~~~ 509 (554)
... |++++|.+.++++.+..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 777 777777777777777766553
No 180
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.30 E-value=2.7e-06 Score=79.89 Aligned_cols=90 Identities=11% Similarity=-0.089 Sum_probs=78.6
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTY 519 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 519 (554)
+..+|..+..+|.+.|++++|++.++++. .+.+...+..+..++...|++++|+..++++++.+|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35678888899999999999999998864 3567888899999999999999999999999999999999999999999
Q ss_pred HccCChhHHHHH
Q 045069 520 AEDGRWDDVMKL 531 (554)
Q Consensus 520 ~~~g~~~~A~~~ 531 (554)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888887653
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.30 E-value=2.1e-06 Score=70.21 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCC--------------------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 045069 447 IYMVKLLGLAGNLEEAYSFIWSLPK--------------------PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDP 506 (554)
Q Consensus 447 ~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 506 (554)
......+.+.|++++|++.|.+... +.....+..+..++.+.|++++|+..++++++.+|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 4445556666666666666655321 11224555566666666666666666666666666
Q ss_pred CCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 507 RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 507 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
.++..+..++.+|...|++++|.+.++++++..+
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p 128 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCC
Confidence 6666666666666666666666666666665543
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=2.5e-06 Score=69.40 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC----CC----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCch
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLPK----PV----DPAVSGALLSCCHIYGNSDLAEIVAHQLFEND------PRKGA 510 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~ 510 (554)
++..+...+...|++++|.+.+++... .+ ....+..+...+...|++++|...++++++.. +....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344455555555555555555544320 11 13345566677777888888888888777662 12245
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 511 YKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 511 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.+..++.++...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6778889999999999999999988753
No 183
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.27 E-value=3.9e-06 Score=61.94 Aligned_cols=67 Identities=24% Similarity=0.188 Sum_probs=58.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
+.++..+..+..++...|++++|+..++++++.+|+++..+..++.+|...|++++|++.+++.++.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5567788888888899999999999999999999999999999999999999999999999888764
No 184
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=6.7e-06 Score=63.82 Aligned_cols=96 Identities=10% Similarity=-0.031 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCC----hhhHHH
Q 045069 410 FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-----PVD----PAVSGA 480 (554)
Q Consensus 410 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~ 480 (554)
+..+...+.+.|++++|+..|++..+. .|.+...|..+..+|.+.|++++|++.+++... .++ ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 334444444445555555555444441 222344444444455555555555544444321 000 124555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFENDPR 507 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~~p~ 507 (554)
+..++...|++++|++.|+++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 667777788888888888888877664
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.24 E-value=1e-06 Score=67.38 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=59.9
Q ss_pred cCChHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHH
Q 045069 456 AGNLEEAYSFIWSLPK-----PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMK 530 (554)
Q Consensus 456 ~g~~~~A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 530 (554)
.|++++|+..+++... +.+...+..+..++...|++++|+..++++++.+|+++.++..++.++...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 5677777777776532 23455667777777888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhcC
Q 045069 531 LRDDIVDNG 539 (554)
Q Consensus 531 ~~~~~~~~~ 539 (554)
.+++.++..
T Consensus 83 ~~~~al~~~ 91 (117)
T 3k9i_A 83 LLLKIIAET 91 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 888777654
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=6.1e-07 Score=67.85 Aligned_cols=94 Identities=15% Similarity=-0.001 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------chhHH
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRK------GAYKV 513 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 513 (554)
+...+..+...+.+.|++++|++.+++.. .+.++..+..+..++...|++++|+..++++++.+|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34566677777778888888888887753 35577788888889999999999999999999999998 77888
Q ss_pred HHHHHHHccCChhHHHHHHHHH
Q 045069 514 MLSNTYAEDGRWDDVMKLRDDI 535 (554)
Q Consensus 514 ~l~~~~~~~g~~~~A~~~~~~~ 535 (554)
.++.++...|++++|.+.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 8888888888888887766544
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=5.4e-06 Score=76.92 Aligned_cols=150 Identities=11% Similarity=-0.009 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHhccCC--CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 341 VMVSSALVDMYSKCGYLGLGIQVFETMSE--RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 341 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
...+..+...+.+.|++++|...|++... |+.. .+...++.+++...+. ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45677888999999999999999998653 3221 1223344444433221 136777888899
Q ss_pred cCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHH-HHhcCChHHHH
Q 045069 419 HGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSC-CHIYGNSDLAE 495 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~-~~~~~~~~~A~ 495 (554)
+.|++++|+..+++..+. .+.+...+..+..+|...|++++|.+.|++... +.+...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998873 345678889999999999999999999998753 4455555555555 34456778888
Q ss_pred HHHHHHHhcCCCCc
Q 045069 496 IVAHQLFENDPRKG 509 (554)
Q Consensus 496 ~~~~~~~~~~p~~~ 509 (554)
..|++++...|.++
T Consensus 320 ~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------
T ss_pred HHHHHhhCCCCCCC
Confidence 99999998888765
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=5.6e-05 Score=75.04 Aligned_cols=169 Identities=11% Similarity=-0.045 Sum_probs=133.5
Q ss_pred CChHHHHHHHhccCC--CC-cchHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcC
Q 045069 355 GYLGLGIQVFETMSE--RN-IITYNSVILGLGLHGF----------TYQAFEFFRDIIEKGLNP-DESTFSALLCACCHG 420 (554)
Q Consensus 355 g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~ 420 (554)
...++|++.++.+.. |+ ...|+.--..+...|+ ++++++.++++.+. .| +..+|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 344567777777663 33 3455555555555555 89999999999984 45 455888888888888
Q ss_pred C--chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhCCC--CCChhhHHHHHHHHHhc-------
Q 045069 421 G--LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG-NLEEAYSFIWSLPK--PVDPAVSGALLSCCHIY------- 488 (554)
Q Consensus 421 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~------- 488 (554)
+ +++++++.++++.+. -+-+..+|+.-..++.+.| .++++++.++++.. +.+...|......+...
T Consensus 121 ~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 8 679999999999984 4557888888888888888 89999999998753 66788888877776653
Q ss_pred -------CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhH
Q 045069 489 -------GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDD 527 (554)
Q Consensus 489 -------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 527 (554)
+.++++++.+++++..+|++...|..+..++.+.|++++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988666
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=2.5e-05 Score=75.49 Aligned_cols=158 Identities=13% Similarity=0.016 Sum_probs=117.8
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPD----------------ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT 443 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 443 (554)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445667888888888888877421111 1246778899999999999999999987643332322
Q ss_pred ----hHHHHHHHHHHhcCChHHHHHHHHhCC-------C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhc------C
Q 045069 444 ----EHYIYMVKLLGLAGNLEEAYSFIWSLP-------K-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN------D 505 (554)
Q Consensus 444 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 505 (554)
.+.+.+...+...|++++|.++++... . .....++..++..+...|++++|..+++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 233445555667899999999887652 1 223567788999999999999999999998776 2
Q ss_pred CCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 506 PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 506 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456888899999999999999999999875
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.15 E-value=2.4e-06 Score=82.67 Aligned_cols=128 Identities=10% Similarity=0.029 Sum_probs=84.9
Q ss_pred HhcCCchHHHHHHHHHhHHHh--CCCC----ChhHHHHHHHHHHhcCChHHHHHHHHhCC---------C-CCChhhHHH
Q 045069 417 CCHGGLVNDGREIFTRMTEEY--GIQA----KTEHYIYMVKLLGLAGNLEEAYSFIWSLP---------K-PVDPAVSGA 480 (554)
Q Consensus 417 ~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~-~~~~~~~~~ 480 (554)
+...|++++|+.++++..+.. -+.| ...+++.|+.+|...|++++|..++++.. . +.-..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 445667777766666654421 1112 14456667777777777777777666542 1 122445677
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc-----CCCCc---hhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCC
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFEN-----DPRKG---AYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEA 544 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 544 (554)
|...|...|++++|+.+++++++. .|+++ .....+..++...|.+++|+.+++++.+...+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 778888888888888888888776 45555 45567888888999999999999999875544444
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.1e-05 Score=65.51 Aligned_cols=130 Identities=15% Similarity=0.017 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----hhH
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEKGL-NPDE----STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----TEH 445 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 445 (554)
+..+...+...|++++|...+++..+... .++. .++..+...+...|++++|...+++..+...-.++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444455555555555555443110 0111 24555566666666666666666665442111111 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCCC----C----CChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLPK----P----VDPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..+...+...|++++|.+.+++... . .....+..+...+...|++++|...++++.+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55666666777777777776665421 1 12345666777788888888888888887765
No 192
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.10 E-value=2e-05 Score=56.69 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=63.4
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCccCCC
Q 045069 472 PVDPAVSGALLSCCHIYGN---SDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRKEAG 545 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 545 (554)
+.++..+..+..++...++ .++|...++++++.+|+++.....++..+.+.|++++|+.+|+++++..+. .+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 5677788888888765554 799999999999999999999999999999999999999999999998776 544
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.09 E-value=1.9e-05 Score=76.95 Aligned_cols=113 Identities=12% Similarity=-0.007 Sum_probs=48.1
Q ss_pred HHccCChHHHHHHHhccCC---CCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCchHHH
Q 045069 351 YSKCGYLGLGIQVFETMSE---RNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPD-ESTFSALLCACCHGGLVNDG 426 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a 426 (554)
+.+.|++++|.+.|++..+ .+...|..+..+|.+.|++++|++.+++..+. .|+ ..++..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4444555555555554331 22334444455555555555555555555542 222 23444444455555555555
Q ss_pred HHHHHHhHHHhCCCCChhHHHHHHHH--HHhcCChHHHHHHHH
Q 045069 427 REIFTRMTEEYGIQAKTEHYIYMVKL--LGLAGNLEEAYSFIW 467 (554)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 467 (554)
.+.|++..+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555554442 11122233333333 444445555554444
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=6.9e-06 Score=62.45 Aligned_cols=64 Identities=13% Similarity=-0.022 Sum_probs=31.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
+...+..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...++++++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555555555555555555555554443
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.07 E-value=2.7e-06 Score=67.28 Aligned_cols=85 Identities=14% Similarity=0.027 Sum_probs=58.5
Q ss_pred CChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCchhHHHHHHHHHccC-
Q 045069 457 GNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGN----------SDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDG- 523 (554)
Q Consensus 457 g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 523 (554)
+.+++|++.+++.. .+.+...|..+..++...++ +++|+..|+++++.+|++..++..++.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 34444444444432 23344444444444444433 568999999999999999999999999998774
Q ss_pred ----------ChhHHHHHHHHHhhcCCc
Q 045069 524 ----------RWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 524 ----------~~~~A~~~~~~~~~~~~~ 541 (554)
++++|++.|+++++.++.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 899999999998887653
No 196
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.07 E-value=0.00026 Score=64.22 Aligned_cols=184 Identities=11% Similarity=-0.027 Sum_probs=137.4
Q ss_pred ccCCh-HHHHHHHhccCCCCcc---hHHHHHHHHHcCCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 045069 353 KCGYL-GLGIQVFETMSERNII---TYNSVILGLGLHGF----------TYQAFEFFRDIIEKGLNP-DESTFSALLCAC 417 (554)
Q Consensus 353 ~~g~~-~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 417 (554)
+.|.+ ++|+.+++.+...++. .|+.--..+...+. +++++.+++.+... .| +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34444 4678888877653332 34332222222222 67899999999884 44 556787777777
Q ss_pred hcCC--chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCC-hHHHHHHHHhCC--CCCChhhHHHHHHHHHhc----
Q 045069 418 CHGG--LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGN-LEEAYSFIWSLP--KPVDPAVSGALLSCCHIY---- 488 (554)
Q Consensus 418 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~---- 488 (554)
...+ .+++++.+++++.+. -+-+..+|+.-..++...|. ++++++.++++. .+.+...|......+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 7777 489999999999984 56678888888888888888 589999998874 467888888777766655
Q ss_pred ----------CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc-----------CChhHHHHHHHHHhhcCC
Q 045069 489 ----------GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED-----------GRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 489 ----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~ 540 (554)
+.++++++.+.+++..+|++.+.+..+..++.+. +.++++++.++++.+..+
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 4588999999999999999999998887777766 468899999999988764
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.04 E-value=1.8e-05 Score=56.86 Aligned_cols=81 Identities=20% Similarity=0.174 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYA 520 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 520 (554)
...+..+...+...|++++|++.+++.. .+.+...+..+..++...|++++|...++++.+.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455556666666666666666666643 24456667777777777888888888888888888888887777777766
Q ss_pred ccC
Q 045069 521 EDG 523 (554)
Q Consensus 521 ~~g 523 (554)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.03 E-value=9.6e-06 Score=64.25 Aligned_cols=72 Identities=8% Similarity=-0.151 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC---------CCCChhhH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchh
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLP---------KPVDPAVS----GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAY 511 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 511 (554)
.|..+..++.+.|++++|+..+++.. .+.+...| .....++...|++++|+..|+++++..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 55666666666666666666655532 34456677 888999999999999999999999999988776
Q ss_pred HHHHH
Q 045069 512 KVMLS 516 (554)
Q Consensus 512 ~~~l~ 516 (554)
...+.
T Consensus 139 ~~~~~ 143 (159)
T 2hr2_A 139 TPGKE 143 (159)
T ss_dssp CTTHH
T ss_pred HHHHH
Confidence 65553
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.03 E-value=2.2e-05 Score=76.16 Aligned_cols=115 Identities=7% Similarity=-0.057 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 045069 409 TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY 488 (554)
Q Consensus 409 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (554)
.+..+...+.+.|++++|...|++..+.....++.. .++..+.- +.....|..+..++.+.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~--------------~~~~~~~~-----~~~~~~~~nla~~~~~~ 330 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS--------------EKESKASE-----SFLLAAFLNLAMCYLKL 330 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHHHHHH-----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC--------------hHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 455666666666667666666666655211111100 00000000 11246788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 489 GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 489 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
|++++|+..++++++.+|+++..+..++.+|...|++++|+..|+++++..+..
T Consensus 331 g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999876543
No 200
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=1.4e-05 Score=74.96 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045069 407 ESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCH 486 (554)
Q Consensus 407 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 486 (554)
...+..+...+.+.|++++|...|++..+.. +.. ......+++.+ ..+.+...+..+..++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~-----~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK-----LQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG-----GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 3457777778888888888888888876620 000 00011111111 11335677888999999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 487 IYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 487 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+.|++++|+..++++++.+|+++..+..++.+|...|++++|++.++++++..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999988654
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.01 E-value=8.1e-05 Score=58.55 Aligned_cols=90 Identities=7% Similarity=-0.115 Sum_probs=53.4
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHc---
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAE--- 521 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 521 (554)
+...|...+..++|.++|++.....++.....|...|.. .++.++|...++++.+. .++.....|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555554334455555555555555 56666666666666654 455666667767766
Q ss_pred -cCChhHHHHHHHHHhhcCC
Q 045069 522 -DGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 522 -~g~~~~A~~~~~~~~~~~~ 540 (554)
.+++++|.+++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6677777777777766553
No 202
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=4.7e-05 Score=75.61 Aligned_cols=158 Identities=8% Similarity=-0.075 Sum_probs=130.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCc----------hHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGL----------VNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
....++|++.++++.+ ..|+.. .|+.--..+...|+ ++++++.++++.+. .+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3345788999999999 567655 56665555655566 89999999999884 566788898888888
Q ss_pred HhcC--ChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc------
Q 045069 454 GLAG--NLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYG-NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED------ 522 (554)
Q Consensus 454 ~~~g--~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 522 (554)
.+.| +++++++.++++. .+.+..+|..-..++...| .++++++.++++++.+|.+..++...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 7799999999975 4778889988888888888 899999999999999999999999998888763
Q ss_pred --------CChhHHHHHHHHHhhcCCccCCCe
Q 045069 523 --------GRWDDVMKLRDDIVDNGLRKEAGV 546 (554)
Q Consensus 523 --------g~~~~A~~~~~~~~~~~~~~~~~~ 546 (554)
+.+++|++++++++...+.....+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW 229 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAW 229 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHH
Confidence 567999999999998776554443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=3.5e-05 Score=57.87 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=62.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+...+..+...+...|++++|+..++++++..|+++..+..++.++...|++++|++.++++++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 45677888899999999999999999999999999999999999999999999999999999987654
No 204
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.89 E-value=3.4e-05 Score=71.49 Aligned_cols=240 Identities=10% Similarity=0.070 Sum_probs=175.2
Q ss_pred CChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhh
Q 045069 36 RDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACS 115 (554)
Q Consensus 36 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 115 (554)
-.+..|+.|.++..+.+.+.+|++.|-+.. |+..|..++.+..+.|.+++-+..+...++.. -++..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHH
Confidence 356778999999999999999988765544 55678899999999999999999888776652 24455568899999
Q ss_pred cCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCC------------------------CCcc
Q 045069 116 ENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSD------------------------PDLV 171 (554)
Q Consensus 116 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~ 171 (554)
+.++..+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 9999887766652 36666666777888888888888888776542 5677
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHH
Q 045069 172 LCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYA 251 (554)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 251 (554)
+|-.+-.+|...+.+.-|.-.--.+.- .| .....++..|-..|.+++-..+++.... --.....+++.|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglg-lErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALG-LERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTT-STTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhC-CCchhHHHHHHHHHHHH
Confidence 899999999999998877655444431 22 2334566778889999998888877652 12346778888988888
Q ss_pred hcCChhhHHHHHhhcC----C-------CChhhHHHHHHHHHhcCCHHHHHHH
Q 045069 252 RCNCMNSAYHVFNSLF----H-------PDLVTWSALITGYSQQGDYGKALYY 293 (554)
Q Consensus 252 ~~~~~~~a~~~~~~~~----~-------~~~~~~~~l~~~~~~~g~~~~a~~~ 293 (554)
+- +.++..+.++... - .....|.-++-.|..-.++|.|...
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 85 4555555544431 1 2456688888888888888876543
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.84 E-value=5.9e-05 Score=54.11 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=61.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|.+.++++.+..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4567788888999999999999999999999999999999999999999999999999999988654
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.00047 Score=54.05 Aligned_cols=111 Identities=9% Similarity=-0.104 Sum_probs=92.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHh----cCChHH
Q 045069 386 GFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGL----AGNLEE 461 (554)
Q Consensus 386 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 461 (554)
+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..+...|.. .++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999887 34443 667777888888999999998873 456778888888887 789999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhcC
Q 045069 462 AYSFIWSLPKPVDPAVSGALLSCCHI----YGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 462 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 505 (554)
|.+++++.....++.....|...|.. .++.++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999997766788888899999988 899999999999998874
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.72 E-value=8.3e-05 Score=56.30 Aligned_cols=80 Identities=10% Similarity=-0.075 Sum_probs=49.1
Q ss_pred HHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045069 426 GREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 426 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
|...|++..+ ..+.+...+..+...|...|++++|++.+++.. .+.+...+..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555544 123345556666666666666666666666543 244556666677777777777777777777777
Q ss_pred cCCC
Q 045069 504 NDPR 507 (554)
Q Consensus 504 ~~p~ 507 (554)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6553
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.68 E-value=7.8e-05 Score=58.90 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=45.9
Q ss_pred HHHHHHHHhCC--CCCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChh
Q 045069 460 EEAYSFIWSLP--KPVDPAVSGALLSCCHIY-----------GNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWD 526 (554)
Q Consensus 460 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 526 (554)
++|+..|++.. .+....+|..+..+|... |++++|++.|+++++.+|++..+...+- ..+
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ 135 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTA 135 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHH
Confidence 35555555432 244455555555555544 5899999999999999999876555542 334
Q ss_pred HHHHHHHHHhhcC
Q 045069 527 DVMKLRDDIVDNG 539 (554)
Q Consensus 527 ~A~~~~~~~~~~~ 539 (554)
+|.++.-.+...+
T Consensus 136 ka~el~~~~~~~~ 148 (158)
T 1zu2_A 136 KAPQLHAEAYKQG 148 (158)
T ss_dssp THHHHHHHHHHSS
T ss_pred hCHhccCcccccc
Confidence 5556555555543
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.67 E-value=5.8e-05 Score=55.31 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=59.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCC--CCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCCh
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLP--KPVDPA-VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRW 525 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 525 (554)
.+..+.+.|++++|++.++++. .+.+.. .+..+..++...|++++|+..++++++.+|+++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4456677788888888887753 244566 77888888888899999999999999998888876633 455
Q ss_pred hHHHHHHHHHhhc
Q 045069 526 DDVMKLRDDIVDN 538 (554)
Q Consensus 526 ~~A~~~~~~~~~~ 538 (554)
.++...+++....
T Consensus 78 ~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 78 MDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHCCTTHH
T ss_pred HHHHHHHHHHhcc
Confidence 6666666655443
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.60 E-value=0.00021 Score=69.10 Aligned_cols=123 Identities=12% Similarity=0.005 Sum_probs=76.8
Q ss_pred HHcCCChHHHHHHHHHHHHc---CCCC---CH-HHHHHHHHHHhcCCchHHHHHHHHHhHHHh--CCCCC----hhHHHH
Q 045069 382 LGLHGFTYQAFEFFRDIIEK---GLNP---DE-STFSALLCACCHGGLVNDGREIFTRMTEEY--GIQAK----TEHYIY 448 (554)
Q Consensus 382 ~~~~~~~~~a~~~~~~m~~~---g~~p---~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~ 448 (554)
+...|++++|..++++.++. -+.| +. .+++.|...|...|++++|..++++..+-. -+.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44566677776666665542 1112 22 257777777777777777777777654320 12222 455677
Q ss_pred HHHHHHhcCChHHHHHHHHhCC---------CCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 449 MVKLLGLAGNLEEAYSFIWSLP---------KPVD-PAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 449 l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
|...|...|++++|+.++++.. ..|+ ..+...+..++...+.+++|+..|.++.+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888887777642 1121 223345556677788888999888888764
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.59 E-value=0.00019 Score=52.39 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCch-hHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGA-YKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
..+..+...|++++|+..++++++.+|+++. .+..++.+|...|++++|++.++++++..+..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3456778999999999999999999999999 99999999999999999999999999876543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.45 E-value=0.00012 Score=69.62 Aligned_cols=59 Identities=8% Similarity=-0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-----C---CCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFEN-----D---PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
++.|+.+|...|++++|+.+++++++. . |+....+..|+.+|..+|++++|+.++++++
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344444444444444444444444443 1 2223345555555666666666666555554
No 213
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.42 E-value=0.022 Score=42.65 Aligned_cols=147 Identities=13% Similarity=0.164 Sum_probs=104.3
Q ss_pred HHHHHH--HHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHH
Q 045069 376 NSVILG--LGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLL 453 (554)
Q Consensus 376 ~~l~~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 453 (554)
..|+.+ +.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+-+.+.
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------- 72 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------- 72 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG-------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH-------------
Confidence 334443 44568888888888888763 345567777766666667677777777775532222
Q ss_pred HhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHH
Q 045069 454 GLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRD 533 (554)
Q Consensus 454 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 533 (554)
.+|+......-+-.+. .+...+...+.....+|+-++-..++..+....|.++.+...++.+|.+.|+..+|.+++.
T Consensus 73 -~C~NlKrVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 73 -KCQNLKSVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp -GCSCTHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -hhhcHHHHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 2344444444443332 2344556677788899999999999999878888899999999999999999999999999
Q ss_pred HHhhcCCc
Q 045069 534 DIVDNGLR 541 (554)
Q Consensus 534 ~~~~~~~~ 541 (554)
++-+.|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99999875
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.39 E-value=9.9e-05 Score=68.49 Aligned_cols=237 Identities=11% Similarity=0.068 Sum_probs=133.5
Q ss_pred HhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccC
Q 045069 139 SITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEP 218 (554)
Q Consensus 139 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 218 (554)
+.+|..|..+....+++.+|++.|=+. .|+..|..+|.+..+.|.++.-..++.-.++..- ++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 344555555555555555555544332 3444555555555555655555555544433322 222223455555555
Q ss_pred CccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc------------------------CCCChhhH
Q 045069 219 SLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL------------------------FHPDLVTW 274 (554)
Q Consensus 219 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------------------~~~~~~~~ 274 (554)
++..+-++++. .|+..-...+.+-|...|.++.|.-+|..+ ...++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 55444333221 233333344444455555555555444443 12467889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc
Q 045069 275 SALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC 354 (554)
Q Consensus 275 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 354 (554)
-.+-.+|...+.+.-|.-.--.++-. || ....++..|-..|.+++...+++.-.... ......++-|.-.|++-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc
Confidence 99888999998887765443333321 11 12235566778888888888887765322 34667788888888874
Q ss_pred CChHHHHHHHhccCC-----------CCcchHHHHHHHHHcCCChHHHHH
Q 045069 355 GYLGLGIQVFETMSE-----------RNIITYNSVILGLGLHGFTYQAFE 393 (554)
Q Consensus 355 g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~ 393 (554)
++++..+.++..-+ .....|..++-.|.+-.+++.|..
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 56666665554331 244578888888888888887653
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.38 E-value=0.00021 Score=68.12 Aligned_cols=91 Identities=11% Similarity=-0.133 Sum_probs=47.5
Q ss_pred HHHHhcCCchHHHHHHHHHhHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------C-CCChhh
Q 045069 414 LCACCHGGLVNDGREIFTRMTEEY--GIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLP---------K-PVDPAV 477 (554)
Q Consensus 414 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~-~~~~~~ 477 (554)
+..+.+.|++++|+.++++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++. . +.-..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444555666666666666655320 11222 3445556666666666666666655432 0 112233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
+..|...|...|++++|+.+++++++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445555555555666666555555555
No 216
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.36 E-value=0.00051 Score=50.31 Aligned_cols=64 Identities=14% Similarity=-0.112 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 045069 442 KTEHYIYMVKLLGLAGNLEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFEND 505 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 505 (554)
+...+..+..+|...|++++|++.|++.. .+.+...|..+..++...|++++|+..++++++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 34455555566666666666666665543 23445566666666666666666666666666553
No 217
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.23 E-value=0.2 Score=49.81 Aligned_cols=259 Identities=11% Similarity=0.022 Sum_probs=143.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 045069 242 VSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 321 (554)
.-...+..+.+.+++.....++.. .+.+...-.....+....|+..+|....+.+-..| ...+..+..++..+.+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 334555666777788877776666 44455555566677777888777777666665554 2333455666666666555
Q ss_pred cchh--HHHHHHHHHhc-----------CCchH-HHHHHHHHHHHccCChHHHHHHHhccCCCCcc---hHHHHHHHHHc
Q 045069 322 VWPG--AVIHGYVIQHG-----------FELSV-MVSSALVDMYSKCGYLGLGIQVFETMSERNII---TYNSVILGLGL 384 (554)
Q Consensus 322 ~~~a--~~~~~~~~~~~-----------~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~ 384 (554)
+... ..-+..+...| ++++. .....++..+. +...+....... .++.. .+...+.-+.+
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 4432 22222222222 11111 11122222222 222233322221 11211 11112223333
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChH
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDEST----FSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 460 (554)
++.+.|...+....+.+ ..+... ...+.......+...++...+..... ..++.....-.+....+.|+++
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHH
Confidence 37889999998887643 223332 33344344455535666677766543 2344444455555566789999
Q ss_pred HHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 461 EAYSFIWSLPKPV--DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 461 ~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.|.+.|+.+...+ ......-+..++...|+.++|..+|+++.+ + ..+|..+
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 9999999997532 333345566677888999999999999875 3 3556655
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.18 E-value=0.0085 Score=54.61 Aligned_cols=68 Identities=9% Similarity=-0.035 Sum_probs=39.1
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 472 PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+.++.++..+...+...|++++|...+++++..+|+ ...+..++.++.-.|++++|.+.++++.+.++
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 445555555555555556666666666666666542 44455556666666666666666666655544
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.16 E-value=0.0039 Score=56.85 Aligned_cols=140 Identities=12% Similarity=-0.002 Sum_probs=98.0
Q ss_pred CCCcchHHHHHHHHH--cCC---ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc----CC-chHHH---HHHHHHhH
Q 045069 369 ERNIITYNSVILGLG--LHG---FTYQAFEFFRDIIEKGLNPDE-STFSALLCACCH----GG-LVNDG---REIFTRMT 434 (554)
Q Consensus 369 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~----~~-~~~~a---~~~~~~~~ 434 (554)
..+...|...+.+.. ..+ +..+|..+|++.++ ..|+. ..|..+..+|.- .+ ..... ...++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 356778888887643 333 35789999999999 67774 356655555531 11 11111 11222211
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 435 EEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPK-PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 435 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
.....+.+..++..+.-.+...|++++|...++++.. .|+...|..+...+...|+.++|.+.++++...+|..++
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 1113356788888888888888999999999999642 567777778888899999999999999999999998764
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.08 E-value=0.0022 Score=61.00 Aligned_cols=95 Identities=9% Similarity=-0.089 Sum_probs=59.9
Q ss_pred cCCchHHHHHHHHHhHHHh--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhCC---------CCC-ChhhHHHHH
Q 045069 419 HGGLVNDGREIFTRMTEEY--GIQAK----TEHYIYMVKLLGLAGNLEEAYSFIWSLP---------KPV-DPAVSGALL 482 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~ 482 (554)
..|++++|+.++++..+.. -+.|+ ..+++.++.+|...|++++|+.++++.. ..| -..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3456667766666654421 12222 3556667777777777777777766642 112 234567778
Q ss_pred HHHHhcCChHHHHHHHHHHHhc-----CCCCchhHH
Q 045069 483 SCCHIYGNSDLAEIVAHQLFEN-----DPRKGAYKV 513 (554)
Q Consensus 483 ~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~ 513 (554)
..|...|++++|+.+++++++. .|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 8888888888888888888776 466665443
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0032 Score=59.93 Aligned_cols=90 Identities=21% Similarity=0.147 Sum_probs=58.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC---CCCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHHh--CCCCC----hhH
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKG---LNPDE----STFSALLCACCHGGLVNDGREIFTRMTEEY--GIQAK----TEH 445 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~ 445 (554)
+..+.+.|++++|..++++..+.. +.|+. .+++.+..+|...|++++|+.++++..+-+ -+.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455666778888888887777531 22221 257777777878888888888877765421 12222 445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
++.|...|...|++++|+.++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Confidence 67777778888888888777654
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.93 E-value=0.0012 Score=51.42 Aligned_cols=92 Identities=9% Similarity=-0.060 Sum_probs=64.5
Q ss_pred chHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhCCC-C-C--ChhhHHHHHHHHHhcCChHHH
Q 045069 422 LVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAG---NLEEAYSFIWSLPK-P-V--DPAVSGALLSCCHIYGNSDLA 494 (554)
Q Consensus 422 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~-~--~~~~~~~l~~~~~~~~~~~~A 494 (554)
....+.+-|.+..+. -+++..+.-.+..++++.+ +.++++.++++... . | ....+..+..++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 445566666666552 3367777777777888877 55688888877542 2 3 356667777788888888888
Q ss_pred HHHHHHHHhcCCCCchhHHHH
Q 045069 495 EIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 495 ~~~~~~~~~~~p~~~~~~~~l 515 (554)
.+.++++++.+|++.......
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHH
Confidence 888888888888776665554
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.83 E-value=0.05 Score=57.02 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=61.8
Q ss_pred HHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHH
Q 045069 250 YARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIH 329 (554)
Q Consensus 250 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 329 (554)
....|+++.|.++.+.+ .+...|..+...+.+.|+++.|...|..+.. |..+...+...|+.+....+.
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 45668888888887665 3457888888888888888888888887643 333444444455555544444
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHh
Q 045069 330 GYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFE 365 (554)
Q Consensus 330 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 365 (554)
+.....|- ++....+|.+.|++++|.+++.
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 44444331 2233344555677777765554
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.83 E-value=0.0045 Score=53.99 Aligned_cols=72 Identities=10% Similarity=-0.048 Sum_probs=58.6
Q ss_pred hhhHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCC-chhHHHHHHHHHc-cCChhHHHHHHHHHhhcCCccCCCe
Q 045069 475 PAVSGALLSCCHI-----YGNSDLAEIVAHQLFENDPRK-GAYKVMLSNTYAE-DGRWDDVMKLRDDIVDNGLRKEAGV 546 (554)
Q Consensus 475 ~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~ 546 (554)
...|..+...|.. -|+.++|.+.|+++++++|+. ...+...++.+++ .|+.++|.+++++.+...+...|+.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 4566667766766 489999999999999999975 8899999988888 4999999999999998887765554
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.79 E-value=0.0099 Score=42.42 Aligned_cols=71 Identities=10% Similarity=-0.058 Sum_probs=54.0
Q ss_pred CCChhHHHHHHHHHHhcCC---hHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 440 QAKTEHYIYMVKLLGLAGN---LEEAYSFIWSLP--KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 440 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
+.++..+..+..++...++ .++|..++++.. .+.++..+..+...+...|++++|+..|+++++.+|+++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4566677777777754444 688888887764 4667788888888888999999999999999998888443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.78 E-value=0.0058 Score=44.90 Aligned_cols=71 Identities=15% Similarity=0.052 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC---------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHH
Q 045069 446 YIYMVKLLGLAGNLEEAYSFIWSLP---------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLS 516 (554)
Q Consensus 446 ~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 516 (554)
+..++..+.+.|+++.|..+++.+. ..+....+..+..++.+.|+++.|...++++.+..|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3444455555555555555554431 1235667788889999999999999999999999999988766663
No 227
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.57 E-value=0.045 Score=57.39 Aligned_cols=100 Identities=13% Similarity=0.068 Sum_probs=57.6
Q ss_pred HHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 045069 351 YSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIF 430 (554)
Q Consensus 351 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 430 (554)
....|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 445677777777766553 446777777777777777777777776643 223333444456655554444
Q ss_pred HHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 045069 431 TRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWS 468 (554)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 468 (554)
+..... | -++.-..+|.+.|++++|++++.+
T Consensus 731 ~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 731 KDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 444332 1 123333445556666666666543
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.48 E-value=0.012 Score=43.05 Aligned_cols=67 Identities=13% Similarity=0.016 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFEND-------PRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+..-...++..+...|+++.|...++++++.. +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34455678888999999999999999999872 34567889999999999999999999999987654
No 229
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.02 Score=57.92 Aligned_cols=58 Identities=10% Similarity=-0.039 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 479 GALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 479 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
..-...|...|+++.|+.+.++++..-|.+...+..|+.+|...|+|+.|+-.+..+.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3344557788999999999999999999999999999999999999999999999884
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.17 E-value=0.025 Score=44.10 Aligned_cols=77 Identities=13% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC---chHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHHHhcCChHHHHH
Q 045069 390 QAFEFFRDIIEKGLNPDESTFSALLCACCHGG---LVNDGREIFTRMTEEYGIQA--KTEHYIYMVKLLGLAGNLEEAYS 464 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 464 (554)
.+.+-|.+..+.|. ++..+...+..++++.+ +.+++..++++..+. . .| ....+..+.-++.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 33444444443332 34444444444455544 334555555555443 2 12 23333444444555555555555
Q ss_pred HHHhC
Q 045069 465 FIWSL 469 (554)
Q Consensus 465 ~~~~~ 469 (554)
+++.+
T Consensus 93 y~~~l 97 (152)
T 1pc2_A 93 YVRGL 97 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.81 E-value=2.2 Score=44.32 Aligned_cols=116 Identities=9% Similarity=0.025 Sum_probs=48.7
Q ss_pred HHHccCChHHHHHHHhccCC-CCcchHHHHH--HHHHcCCChHHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHhcCCc
Q 045069 350 MYSKCGYLGLGIQVFETMSE-RNIITYNSVI--LGLGLHGFTYQAFEFFRDIIEKGLNPDES-TFS---ALLCACCHGGL 422 (554)
Q Consensus 350 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~---~ll~~~~~~~~ 422 (554)
.+...|+.+....++..+.+ .+......+. -++...|+.+.+..+++.+... .++. -|. .+.-+|+..|+
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCC
T ss_pred hhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCC
Confidence 34445555554544443321 1222222222 2333455655555555555542 2222 222 23334556666
Q ss_pred hHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 423 VNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 423 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
.....+++..+... ...++.-...+.-++...|+.+.+.++++.+.
T Consensus 576 ~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 576 NSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred HHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 55555566665542 22222222222223333444444455554443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.64 E-value=0.16 Score=39.04 Aligned_cols=108 Identities=9% Similarity=0.020 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhcCCch------HHHHHHHHHhHHHhCCCCChh-HHHHHHHH------HHhcCChHHHHHHHHhCC--
Q 045069 406 DESTFSALLCACCHGGLV------NDGREIFTRMTEEYGIQAKTE-HYIYMVKL------LGLAGNLEEAYSFIWSLP-- 470 (554)
Q Consensus 406 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~-- 470 (554)
|..+|-..+....+.|+. ++..++|++... .++|+.. .+...+.. +...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445666666666666777 777888888877 4777531 11111111 122356666666665542
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHH
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVML 515 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 515 (554)
.+.-...|......-.++|++..|..++.+++...|.+.......
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 112255555555555666666666666666666666555444443
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.49 E-value=0.37 Score=36.06 Aligned_cols=75 Identities=9% Similarity=-0.053 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHHhcCChHH---HHHHHHhCCCC--C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHH
Q 045069 441 AKTEHYIYMVKLLGLAGNLEE---AYSFIWSLPKP--V--DPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKV 513 (554)
Q Consensus 441 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 513 (554)
++..+--.+..++.+...... ++.+++.+... | .......|..++.+.|++++|.+.++.+++..|++..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444444444444444333 44455443321 1 2334556677788888888888888888888888876655
Q ss_pred HH
Q 045069 514 ML 515 (554)
Q Consensus 514 ~l 515 (554)
..
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.57 Score=37.53 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=17.0
Q ss_pred cCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHH
Q 045069 354 CGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRD 397 (554)
Q Consensus 354 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 397 (554)
.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|++
T Consensus 18 lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 18 YGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp TTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444443332 2233344444444444444444444443
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.43 E-value=0.033 Score=41.68 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=59.5
Q ss_pred CCChhhHHHHHHHHHhcCChHH---HHHHHHHHHhcC-C-CCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 472 PVDPAVSGALLSCCHIYGNSDL---AEIVAHQLFEND-P-RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.++..+-..+.+++.+.++... ++.+++...+.. | ......+.|+-++.+.|++++|+++++.+++..+..
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 5778888888899988876555 899999988886 5 466788888889999999999999999999877644
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.87 Score=36.48 Aligned_cols=130 Identities=9% Similarity=-0.021 Sum_probs=92.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCCh
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNL 459 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 459 (554)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 3456789999999998766 3678999999999999999999999999865 45566667778888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 460 EEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
+.-.++-+...... -++....++...|+++++.+++.+.-+. ..-+-.....|-.+.|.++.+++-
T Consensus 77 e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r~--------~eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGSL--------PLAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTCH--------HHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCCh--------HHHHHHHHHcCcHHHHHHHHHHhC
Confidence 77666654432211 2344455667889999999998764321 111112334678888888888764
No 237
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.97 E-value=0.64 Score=34.98 Aligned_cols=65 Identities=18% Similarity=0.124 Sum_probs=40.4
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCC
Q 045069 373 ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGI 439 (554)
Q Consensus 373 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 439 (554)
......+..+..+|+-++-.+++.++.. ..+|++.....+..+|.+.|+..+|.+++.+.-++ |+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 3445555666666766666666666433 24566666666677777777777777777766664 44
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.74 E-value=0.33 Score=37.00 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 478 SGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 478 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
...|..++.+.|++++|.++.+.+++..|++..
T Consensus 80 LYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 80 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 334444455555555555555555555555443
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.43 E-value=3.3 Score=39.39 Aligned_cols=258 Identities=9% Similarity=0.010 Sum_probs=132.3
Q ss_pred cCChHHHHHHHHHhHHc-----CCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHh-cCCCCHhHHHHHHHHHH----c
Q 045069 82 AHRFNDAKSLFKNLLRT-----QLKPDNFTYACITRACSENSDLPGLRFVHGGAIVS-GLGRDSITSSALVTAYS----K 151 (554)
Q Consensus 82 ~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~----~ 151 (554)
.|++++|++.+..+.+. +...+......++..|...|+++...+.+..+.+. |..+ .....++..+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 37788888877666543 12223445667888888999998887777665543 3222 22233333222 2
Q ss_pred CC--CHhHHHHhhcccCC---CCc-------chHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCC
Q 045069 152 LS--LIDEAIKVFDGVSD---PDL-------VLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPS 219 (554)
Q Consensus 152 ~g--~~~~A~~~~~~~~~---~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 219 (554)
.. +.+.-+.+.+.... .-. .....|...+...|++.+|.+++..+...-...+....
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~----------- 175 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE----------- 175 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH-----------
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH-----------
Confidence 22 22222233333322 111 11245667777888888888888887542111111110
Q ss_pred ccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhhHHHHHhhc------CC--CC--hhhHHHHHHHHHhcCCHHH
Q 045069 220 LLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNSAYHVFNSL------FH--PD--LVTWSALITGYSQQGDYGK 289 (554)
Q Consensus 220 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~--~~--~~~~~~l~~~~~~~g~~~~ 289 (554)
-...+..-+..|...+++..|..+++++ .. |+ ...+...+..+...+++.+
T Consensus 176 -------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~ 236 (445)
T 4b4t_P 176 -------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLE 236 (445)
T ss_dssp -------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred -------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 0122233444555556666555555543 11 11 1234455566666777777
Q ss_pred HHHHHHHHHhC-CCCCCHHHH----HHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHcc--CChHHHHH
Q 045069 290 ALYYFRKLNMQ-GKKADPVLI----ASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKC--GYLGLGIQ 362 (554)
Q Consensus 290 a~~~~~~m~~~-~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~ 362 (554)
|...|.+.-.. ....+...+ ..++.+..-.+....-..++........-++...|..++.+|... .+++.+.+
T Consensus 237 a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~ 316 (445)
T 4b4t_P 237 VAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQK 316 (445)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHH
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHH
Confidence 77766665432 111122211 112222222222233334444444444456778888999988764 45778888
Q ss_pred HHhccCCCC
Q 045069 363 VFETMSERN 371 (554)
Q Consensus 363 ~~~~~~~~~ 371 (554)
.|.....++
T Consensus 317 ~~~~~L~~~ 325 (445)
T 4b4t_P 317 TYEPVLNED 325 (445)
T ss_dssp HTCSSTTTC
T ss_pred HHHHHhccc
Confidence 887765443
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.30 E-value=2.7 Score=37.38 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHH----HHHHHHHCCCCCChhhHHHHHHHc
Q 045069 140 ITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQ----LFDWMLRLGKTPDEYTLVGLISGL 215 (554)
Q Consensus 140 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~ 215 (554)
..|.++..=|.+.+++++|++++..- ...+.+.|+...|-+ +++...+.+++++..+...++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35566677788889999999885432 344566777665555 455566678888888877777766
Q ss_pred ccCCccc-hhhHHHHHHHH----hc--CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhc---C
Q 045069 216 WEPSLLS-VGQGIHGFCLK----SS--FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQ---G 285 (554)
Q Consensus 216 ~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---g 285 (554)
......+ .-..+.+.+++ .| ...++.....+...|.+.|++.+|...|-.-...+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533222 22334444443 22 2357788888888899999998888877533323455555555444443 4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVI 333 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 333 (554)
...++--.+-+ .+-.|...|+...|..+++...
T Consensus 183 ~~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 43332222111 1223445667777777776654
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.26 E-value=2.9 Score=37.50 Aligned_cols=169 Identities=14% Similarity=0.057 Sum_probs=99.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEF----FRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
+|.++..=|.+.+++++|++++-.- ...+.+.|+..-|..+ ++-..+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3444555577778888887765532 2345556665554443 455556778888888777777766
Q ss_pred cCCchH-HHHHHHHHhHH---HhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 045069 419 HGGLVN-DGREIFTRMTE---EYG--IQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSD 492 (554)
Q Consensus 419 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 492 (554)
....-+ .=..+.+++.+ +.| -.-|+.....+...|.+.+++.+|...|- ....+++..+..++.-+...+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCc
Confidence 554311 11222222221 123 23467788899999999999999998883 222333456655554444433322
Q ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 493 LAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 493 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
++--++-+ .+--|.-.|+...|...++.+.+
T Consensus 185 e~dlfiaR--------------aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLYCAR--------------AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHH--------------HHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222221 22346778899999998877765
No 242
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.15 E-value=0.13 Score=44.86 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhc-----CCchHHHHHHHHHhHHHhCCCC--ChhHHHHHHHHHHhc-
Q 045069 388 TYQAFEFFRDIIEKGLNPD---ESTFSALLCACCH-----GGLVNDGREIFTRMTEEYGIQA--KTEHYIYMVKLLGLA- 456 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~- 456 (554)
...|...+++.++ +.|+ ...|..+...|.+ -|+.++|.+.|++..+ +.| +..++..+.+.+++.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhc
Confidence 4455556666666 4555 2355556655655 3666666666666655 233 245555555555542
Q ss_pred CChHHHHHHHHh
Q 045069 457 GNLEEAYSFIWS 468 (554)
Q Consensus 457 g~~~~A~~~~~~ 468 (554)
|+.+++.+++++
T Consensus 254 gd~~~a~~~L~k 265 (301)
T 3u64_A 254 NNRAGFDEALDR 265 (301)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 555555555544
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.80 E-value=0.26 Score=37.08 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCch
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGA 510 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 510 (554)
.+..|..++.+.|++++|.+..+.+++..|++..
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3344444455555555555555555555554443
No 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.38 E-value=4.1 Score=36.27 Aligned_cols=170 Identities=9% Similarity=-0.050 Sum_probs=100.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFE----FFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
.|.++..=|.+.+++++|++++..- ...+.+.|+...|.. +++-..+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3445555577778888888776532 334556677655554 4555556788888888777777765
Q ss_pred cCCchH-HHHHHHHHhHH---HhCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhc---C
Q 045069 419 HGGLVN-DGREIFTRMTE---EYGI--QAKTEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIY---G 489 (554)
Q Consensus 419 ~~~~~~-~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---~ 489 (554)
....-+ .=.++++++.+ +.|- .-++.....+...|.+.|++.+|...|-.. ...++..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCC
Confidence 532111 11223333321 1122 236788899999999999999999887522 122455555555544444 4
Q ss_pred ChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 490 NSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 490 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
...++--++-++ +--|.-.|+...|..+++...+.
T Consensus 183 ~~~e~dlf~~Ra--------------VL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAEFFSRL--------------VFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHH--------------HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHHHHH
Confidence 433333322222 12456778999999998887643
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.17 E-value=4.6 Score=36.23 Aligned_cols=133 Identities=13% Similarity=0.014 Sum_probs=79.8
Q ss_pred HHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHH----HHHHHHCCCCCChhhHHHHHHHcc
Q 045069 141 TSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQL----FDWMLRLGKTPDEYTLVGLISGLW 216 (554)
Q Consensus 141 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~ 216 (554)
+|.++..=|.+.+++++|++++-.- ...+.+.|+...+-++ ++.+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556666788889999999875432 3445566776555444 455566788888888777777665
Q ss_pred cCCccch-hhHHHHHH----HHhc--CCCchhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhc
Q 045069 217 EPSLLSV-GQGIHGFC----LKSS--FDSYDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQ 284 (554)
Q Consensus 217 ~~~~~~~-a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 284 (554)
....-+- -..+.+.+ .+.| ...|+.....+...|.+.+++.+|...|-.-..+.+..+..++.-+...
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 5443221 12223333 3333 3456677777888888888888887777432333334554444444333
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.06 E-value=0.25 Score=38.89 Aligned_cols=123 Identities=16% Similarity=0.058 Sum_probs=65.0
Q ss_pred cCCCCCHH--HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 045069 401 KGLNPDES--TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT-------EHYIYMVKLLGLAGNLEEAYSFIWSLP- 470 (554)
Q Consensus 401 ~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~- 470 (554)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+.+|+. .++..+++++...|++..|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34555444 34445666777888888888777765532334442 355667777777788777777776631
Q ss_pred ------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhh
Q 045069 471 ------KPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVD 537 (554)
Q Consensus 471 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 537 (554)
..+.. ...+. ...... .-. ..+.+.+..+.++.+|.+.|++++|+.+++.+..
T Consensus 92 ~~k~l~k~~s~--~~~~~----~~ss~p-------~s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG----NSASTP-------QSQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCc--ccccc----ccCCCc-------ccc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11111 00000 000000 000 0133446777788899999999999999887643
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.81 E-value=0.91 Score=34.97 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=21.9
Q ss_pred CCcchHHHHHHHHHhcCCh------HHHHHHHHHhHHcCCCCC
Q 045069 67 RSVFLWNSIIRAYALAHRF------NDAKSLFKNLLRTQLKPD 103 (554)
Q Consensus 67 ~~~~~~~~ll~~~~~~~~~------~~a~~~~~~m~~~~~~p~ 103 (554)
.|..+|-..+...-+.|++ ++.+++|++.... ++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 3555666666666556666 6666666666654 5554
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.46 E-value=9.3 Score=37.97 Aligned_cols=334 Identities=11% Similarity=-0.073 Sum_probs=162.0
Q ss_pred HHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccc
Q 045069 143 SALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLS 222 (554)
Q Consensus 143 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 222 (554)
..-+..+.+.+++...+..+.. ...+...-.....+....|+..+|......+=..| .........++..+.+.|...
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 4445556666777777766655 32333334445556666666666655555543333 223334444444444333332
Q ss_pred hhh--HHHHHHHHh-----------cCCCchh-HHHHHHHHHHhcCChhhHHHHHhhcCCCChhh---HHHHHHHHHhcC
Q 045069 223 VGQ--GIHGFCLKS-----------SFDSYDY-VSSVLVSMYARCNCMNSAYHVFNSLFHPDLVT---WSALITGYSQQG 285 (554)
Q Consensus 223 ~a~--~~~~~~~~~-----------~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g 285 (554)
... .=+..+... .++++.. ....++..+. +...+....... .++... +..-+.-+.+ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 211 001111111 1112211 1122222222 222333332222 222221 1112223333 3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASV----LAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGI 361 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 361 (554)
+.+.|...+....... ..+......+ .......+...++...+....... .+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 7889999998886544 2333333222 223333443555666666544333 33333444555556779999999
Q ss_pred HHHhccCCCC---cchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhC
Q 045069 362 QVFETMSERN---IITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYG 438 (554)
Q Consensus 362 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 438 (554)
..|+.|.... ....-=+..++...|+.++|..+|+.+.+. .+ -|..+. ..+.|..-.. ... .
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~~~-----~~~---~ 370 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYEL-----KID---K 370 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCCC-----CCC---C
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCCC-----CCC---C
Confidence 9999987532 122333555777889999999999998752 22 233222 1223321000 000 0
Q ss_pred CCCC-hh-----HHHHHHHHHHhcCChHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045069 439 IQAK-TE-----HYIYMVKLLGLAGNLEEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQL 501 (554)
Q Consensus 439 ~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 501 (554)
..+. .. .-...+..+...|....|...+..+....+......+.......|..+.++....+.
T Consensus 371 ~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 371 APQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp CCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0010 00 111234556778999988887776544444444455555556778887777665443
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.75 E-value=0.98 Score=35.55 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=28.4
Q ss_pred HHHHHcCCChHHHHHHHHHHHHcC-CCCC-----H--HHHHHHHHHHhcCCchHHHHHHHHHhH
Q 045069 379 ILGLGLHGFTYQAFEFFRDIIEKG-LNPD-----E--STFSALLCACCHGGLVNDGREIFTRMT 434 (554)
Q Consensus 379 ~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-----~--~~~~~ll~~~~~~~~~~~a~~~~~~~~ 434 (554)
+..+...|.++.|+-+.+.+.... ..|+ . .++..+.+++...+++.+|...|++..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344445555555555554433210 1222 1 144555666666666666666666653
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.26 E-value=16 Score=38.13 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=16.3
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHH
Q 045069 106 TYACITRACSENSDLPGLRFVHGGAI 131 (554)
Q Consensus 106 ~~~~ll~~~~~~~~~~~a~~~~~~~~ 131 (554)
-|..++.+..+.++.+.+.++|..+.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555566666666666666666654
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.18 E-value=0.76 Score=46.59 Aligned_cols=52 Identities=15% Similarity=-0.056 Sum_probs=43.6
Q ss_pred HHHHcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCchHHHHHHHHHh
Q 045069 380 LGLGLHGFTYQAFEFFRDIIEKGLNPDE-STFSALLCACCHGGLVNDGREIFTRM 433 (554)
Q Consensus 380 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~ 433 (554)
.-+...|+++.|+++-++... ..|+. .+|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 346678999999999999888 56664 48999999999999999999888877
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.04 E-value=1.9 Score=30.42 Aligned_cols=64 Identities=16% Similarity=0.231 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 387 FTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 387 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++|+.++.+ ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 34466677777777789999999999999999999999999999999886 44445677777654
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.85 E-value=0.69 Score=43.22 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=37.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 480 ALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 480 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
.++..+...|++++|...+..+...+|-+...+..+..+|.+.|+..+|++.|+++.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455566666677666666666677666666666667777777777776666654
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.59 E-value=3.2 Score=29.07 Aligned_cols=87 Identities=11% Similarity=-0.012 Sum_probs=64.3
Q ss_pred CCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHH
Q 045069 117 NSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196 (554)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 196 (554)
....++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+.-||...|-++-. .+.|-.+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3466888888888877653 33333344566889999999999999999999999988765 4788888888888787
Q ss_pred HHCCCCCChhhH
Q 045069 197 LRLGKTPDEYTL 208 (554)
Q Consensus 197 ~~~~~~p~~~~~ 208 (554)
...| .|....|
T Consensus 95 a~sg-~p~~q~F 105 (115)
T 2uwj_G 95 GGSS-DPALADF 105 (115)
T ss_dssp HTCS-SHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 7665 4444444
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.35 E-value=15 Score=40.02 Aligned_cols=141 Identities=15% Similarity=0.101 Sum_probs=71.5
Q ss_pred HHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCChHHHHHHHhccCC---CCc----------------
Q 045069 312 VLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYLGLGIQVFETMSE---RNI---------------- 372 (554)
Q Consensus 312 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---------------- 372 (554)
++..+...+..+.+..+... .+.++...-.+..+|...|++++|.+.|++... .+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44444555555554443322 122333334566777888888888888877642 000
Q ss_pred -------chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCH--H--HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCC
Q 045069 373 -------ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDE--S--TFSALLCACCHGGLVNDGREIFTRMTEEYGIQA 441 (554)
Q Consensus 373 -------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 441 (554)
.-|..++..+.+.+.++.+.++-+..++....-+. . .|..+..++...|++++|...+-.+... ..
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~-- 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PL-- 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SS--
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HH--
Confidence 11444555555666666666655555543211111 1 2455555666666666666655555432 11
Q ss_pred ChhHHHHHHHHHHhcCChH
Q 045069 442 KTEHYIYMVKLLGLAGNLE 460 (554)
Q Consensus 442 ~~~~~~~l~~~~~~~g~~~ 460 (554)
-......++..++..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 2334444555555444433
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.15 E-value=0.66 Score=39.85 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=28.5
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 486 HIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 486 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.+.|+.+.|++....-++.+|.|......|.+.++-.|+|+.|.+-++.+.+..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 344555555555555555555555555555555555555555555555444433
No 257
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=89.58 E-value=3.5 Score=28.96 Aligned_cols=87 Identities=11% Similarity=0.035 Sum_probs=63.0
Q ss_pred CCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCChhhHHHHHHHH
Q 045069 117 NSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFWDKSLQLFDWM 196 (554)
Q Consensus 117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 196 (554)
....++|.-+-+.+...+. ...+--+-+..+...|++++|..+.+.+.-||...|-+|-.. +.|-.+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3467888888888877653 333333445667889999999999999999999999887654 677778887777777
Q ss_pred HHCCCCCChhhH
Q 045069 197 LRLGKTPDEYTL 208 (554)
Q Consensus 197 ~~~~~~p~~~~~ 208 (554)
...| .|....|
T Consensus 96 a~sg-~p~~q~F 106 (116)
T 2p58_C 96 ARSQ-DPRIQTF 106 (116)
T ss_dssp TTCC-CHHHHHH
T ss_pred HhCC-CHHHHHH
Confidence 6654 3444444
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.73 E-value=3.6 Score=38.32 Aligned_cols=72 Identities=11% Similarity=0.055 Sum_probs=51.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHH----HhCCCCChhHHHHH
Q 045069 377 SVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTE----EYGIQAKTEHYIYM 449 (554)
Q Consensus 377 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l 449 (554)
.++..+...|++++|...+..+... -+-+...+..++.++.+.|+..+|++.|+.+.+ .+|+.|+..+-...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3455666778888888888777763 233566888888888888888888888877654 35888887664443
No 259
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.66 E-value=4.3 Score=33.12 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHhc--CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 491 SDLAEIVAHQLFEN--DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 491 ~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
...+..+|..+... .-.-+..|...+..+...|++++|.++|+.-++.+-+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555554 23444555555555666666666666666555544433
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.53 E-value=15 Score=33.94 Aligned_cols=162 Identities=12% Similarity=0.026 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHh----cCCchHHHHHHHHHHHHccCC-hHHHHHHHhccCC---CCcchH---
Q 045069 307 VLIASVLAAAAKSANVWPGAVIHGYVIQH----GFELSVMVSSALVDMYSKCGY-LGLGIQVFETMSE---RNIITY--- 375 (554)
Q Consensus 307 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~--- 375 (554)
.....+...|.+.|+.++..+++...... +-.-.......+++.+....+ .+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777666666654321 111233445566666655332 2222333322221 111222
Q ss_pred ---HHHHHHHHcCCChHHHHHHHHHHHHcCCCCC--H---HHHHHHHHHHhcCCchHHHHHHHHHhHHHh-CCCCChhHH
Q 045069 376 ---NSVILGLGLHGFTYQAFEFFRDIIEKGLNPD--E---STFSALLCACCHGGLVNDGREIFTRMTEEY-GIQAKTEHY 446 (554)
Q Consensus 376 ---~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 446 (554)
..++..|...|++.+|.+++.++.+.--..| . ..+..-+..|...+++.++...+....... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2456677777777777777777766311111 1 134455556667777777777776665431 122332221
Q ss_pred ----HHHHHHHH-hcCChHHHHHHHHh
Q 045069 447 ----IYMVKLLG-LAGNLEEAYSFIWS 468 (554)
Q Consensus 447 ----~~l~~~~~-~~g~~~~A~~~~~~ 468 (554)
..-+..+. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 11222334 56777777766644
No 261
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.64 E-value=19 Score=34.09 Aligned_cols=163 Identities=12% Similarity=0.096 Sum_probs=95.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhcCCchHHHHHHHHHhHHH-hCCCCC----hh
Q 045069 375 YNSVILGLGLHGFTYQAFEFFRDIIEK--GLNPD---ESTFSALLCACCHGGLVNDGREIFTRMTEE-YGIQAK----TE 444 (554)
Q Consensus 375 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~ 444 (554)
...|...+...|++.+|..++.++... |..+. ...+...++.|...+++.+|..+++++..+ +...++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778888999999999999998743 22222 124667788899999999999999987532 122222 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC----CCChhhHH----HHHHHHHhcCChHHHHHHHHHHHhc-CCCCchhHHHH
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLPK----PVDPAVSG----ALLSCCHIYGNSDLAEIVAHQLFEN-DPRKGAYKVML 515 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l 515 (554)
.+...+..+...+++.+|-+.|.++-. ..++..+. .++.+..-.+....-..+....... .-.+...+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 567778888889999999988776531 12222221 1222222222222222222222221 11233456667
Q ss_pred HHHHHcc--CChhHHHHHHHHHhh
Q 045069 516 SNTYAED--GRWDDVMKLRDDIVD 537 (554)
Q Consensus 516 ~~~~~~~--g~~~~A~~~~~~~~~ 537 (554)
..+|... .+|+.+.+.+.....
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHhchHhhhHHHHHHHHHHhc
Confidence 6777643 466777666655443
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.33 E-value=4.2 Score=30.48 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKL 452 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 452 (554)
.-+..+-++.+....+.|++......+.+|-+.+|+..|.++|+-++.+ ..+...+|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 3355666677777789999999999999999999999999999999886 44556678777654
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.34 E-value=6.1 Score=27.74 Aligned_cols=78 Identities=8% Similarity=-0.051 Sum_probs=56.3
Q ss_pred chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHH
Q 045069 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLR 97 (554)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 97 (554)
...++..|-+.+...+. ....-..-+..+..+|++++|..+.+....||...|-++-. .+.|..+++..-+..+-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667778888877654 22222233446778999999999999999999999877755 477888888777777766
Q ss_pred cC
Q 045069 98 TQ 99 (554)
Q Consensus 98 ~~ 99 (554)
.|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.18 E-value=6.4 Score=42.80 Aligned_cols=63 Identities=10% Similarity=-0.182 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCc----hhHHHHHHHHHccCChhHHHHHHHHHhhcC
Q 045069 477 VSGALLSCCHIYGNSDLAEIVAHQLFENDP-RKG----AYKVMLSNTYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 477 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.|..++..+.+.+.++.+.++.+.+++..+ ++. ..+..+.+.+...|++++|...+-.+.+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 455566666677777777777777766532 222 145556667777777777777776555443
No 265
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=85.67 E-value=7.2 Score=30.22 Aligned_cols=49 Identities=6% Similarity=0.081 Sum_probs=35.8
Q ss_pred HHHHHHHHHhc--CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 494 AEIVAHQLFEN--DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 494 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
+..+|+.+... .-..+..|...+..+...|++++|.++++.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 66777777666 35566777777777888888888888888777766554
No 266
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.49 E-value=6.4 Score=27.69 Aligned_cols=78 Identities=10% Similarity=-0.055 Sum_probs=54.9
Q ss_pred chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHH
Q 045069 18 SLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLR 97 (554)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 97 (554)
...+|..|-+.+...+. ....-..-+..+..+|++++|..+.+....||...|-++-.. +.|..+++..-+..+-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45667777787776654 222222333467788999999999999999999998777653 66777777777766666
Q ss_pred cC
Q 045069 98 TQ 99 (554)
Q Consensus 98 ~~ 99 (554)
.|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.07 E-value=3.1 Score=35.82 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=31.7
Q ss_pred HHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhC
Q 045069 416 ACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 416 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 469 (554)
...+.|++++|+.....-++ .-|-|...-..+++.+|-.|+|+.|.+-++..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556666666666666555 34555666666666666666666666665554
No 268
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.49 E-value=9.8 Score=26.93 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
|.-+..+-++.+....+.|++......+.+|.+.+++..|.++++-++.+-. ....+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~-~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CchhhHHHHHH
Confidence 3445555666666666777777777777777777777777777777765532 22345555543
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.01 E-value=8 Score=29.10 Aligned_cols=68 Identities=7% Similarity=0.025 Sum_probs=34.1
Q ss_pred CChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCC-CCchhHHHHHHHHHccCChhHHHHHHHHHhhcCC
Q 045069 473 VDPAVSGALLSCCHIYGN---SDLAEIVAHQLFENDP-RKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 540 (554)
+++.+-..+.+++.+..+ ..+++.+++.+.+..| .....++.|+-++.+.|++++|+++.+.+++..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 344444444444444432 3345555555555554 2344445555555566666666666655555443
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=82.08 E-value=12 Score=29.53 Aligned_cols=48 Identities=4% Similarity=0.057 Sum_probs=24.0
Q ss_pred HHHHHHHHHhc--CCCCchhHHHHHHHHHccCChhHHHHHHHHHhhcCCc
Q 045069 494 AEIVAHQLFEN--DPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLR 541 (554)
Q Consensus 494 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 541 (554)
+..+|+.+... .-.-+.+|...+..+...|++++|.++|+.-++.+-+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34444444444 2344445555555555555555555555555554433
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=78.35 E-value=58 Score=32.56 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHccc
Q 045069 173 CNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWE 217 (554)
Q Consensus 173 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 217 (554)
--.+|-.|.++|++++|.++.++.... ..--...|...+..++.
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 445666677777777777777654321 11112345555566653
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.27 E-value=29 Score=29.97 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=10.8
Q ss_pred HHHHHHhcCCchhHHHHhccC
Q 045069 44 LVRLYALNNVLPSARILFDKT 64 (554)
Q Consensus 44 ll~~~~~~~~~~~A~~~~~~~ 64 (554)
.+...++.|+++....+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g 28 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGG 28 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 344445555555555555543
No 273
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=77.75 E-value=21 Score=27.22 Aligned_cols=71 Identities=6% Similarity=0.007 Sum_probs=47.1
Q ss_pred CCChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCC-CchhHHHHHHHHHccCChhHHHHHHHHHhhcCCcc
Q 045069 472 PVDPAVSGALLSCCHIYGN---SDLAEIVAHQLFENDPR-KGAYKVMLSNTYAEDGRWDDVMKLRDDIVDNGLRK 542 (554)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 542 (554)
.+++.+-..+.+++.+..+ ..+++.+++.+.+..|. .....+.|+-++.+.|++++|+++.+.+++..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 4566666666666666543 44677777777776663 44566666677778888888888877777765543
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.69 E-value=22 Score=26.78 Aligned_cols=63 Identities=13% Similarity=0.040 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCCchHHHHHHHHH
Q 045069 286 DYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFELSVMVSSALVD 349 (554)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 349 (554)
|.-+..+-++.+....+.|++......+.+|.+.+++..|..+++-++.+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344555556666666778888888888888888888888888887776553 222445655554
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=76.53 E-value=16 Score=31.57 Aligned_cols=170 Identities=8% Similarity=-0.057 Sum_probs=80.0
Q ss_pred HHHHHHHhcCCCChh---HHHHHHHHHHhcCCchhHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 045069 25 LHALVAKASLLRDPF---YATKLVRLYALNNVLPSARILFDKTPQRS---VFLWNSIIRAYALAHRFNDAKSLFKNLLRT 98 (554)
Q Consensus 25 ~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 98 (554)
+.+.+.+.|..++.. .-.+.+...+..|+.+-+..+++.-..++ ..-++ .+...+..|+.+ +++.+.+.
T Consensus 20 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~ 94 (285)
T 1wdy_A 20 LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT-PFLLAAIAGSVK----LLKLFLSK 94 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHTCHH----HHHHHHHT
T ss_pred HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCCHH----HHHHHHHc
Confidence 344455566554422 22345667777888888877777644332 22222 233334556543 44555556
Q ss_pred CCCCCcccH--HHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhH------------HHHHHHHHHcCCCHhHHHHhhcc
Q 045069 99 QLKPDNFTY--ACITRACSENSDLPGLRFVHGGAIVSGLGRDSIT------------SSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 99 ~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
|..++.... .+.+...+..|+.+- ++.+.+.|..++... -...+...+..|+.+-+..+++.
T Consensus 95 g~~~~~~~~~g~t~L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 95 GADVNECDFYGFTAFMEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp TCCTTCBCTTCCBHHHHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCccCcccCCHHHHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 665554321 123444445566543 444455555443210 01223333445666666655554
Q ss_pred cCC----CCcchHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 045069 165 VSD----PDLVLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPD 204 (554)
Q Consensus 165 ~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 204 (554)
... .+....+.+.. .+..++.....++++.+.+.|..++
T Consensus 171 ~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 171 MGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp SCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred cCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCC
Confidence 221 22222233322 2334444444555555555555443
No 276
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=76.23 E-value=14 Score=32.46 Aligned_cols=143 Identities=12% Similarity=0.037 Sum_probs=63.1
Q ss_pred HHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccH--HHHHHHhhcCCChh
Q 045069 44 LVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTY--ACITRACSENSDLP 121 (554)
Q Consensus 44 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~ 121 (554)
.+...+..|+.+-+..+++.-..++...-.+.+...+..|+.+-+ +.+.+.|..++.... .+.+...+..|+.+
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~ 109 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDSGNMQ 109 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 345556677777776666653322221112234444455655433 333444554443221 12333344555554
Q ss_pred hHHHHHHHHHHhcCCCCHhH---HHHHHHHHHcCCCHhHHHHhhcccCCC-CcchHHHHHHHHHhCCChhhHHHHHH
Q 045069 122 GLRFVHGGAIVSGLGRDSIT---SSALVTAYSKLSLIDEAIKVFDGVSDP-DLVLCNSMISGFAHCGFWDKSLQLFD 194 (554)
Q Consensus 122 ~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 194 (554)
-+..+ .+.|..++... +.+.+...+..|+.+-+..+++.-... +...-.+.+...+..|+.+-+.-+++
T Consensus 110 ~v~~L----l~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 182 (285)
T 3kea_A 110 TVKLF----VKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLD 182 (285)
T ss_dssp HHHHH----HHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHH----HhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHH
Confidence 44333 33344333221 123344445556666555555544332 22122333334445555554444443
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=73.10 E-value=36 Score=27.60 Aligned_cols=162 Identities=9% Similarity=-0.002 Sum_probs=86.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcc
Q 045069 26 HALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNF 105 (554)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 105 (554)
...+.+.--.+++..-...+..+.+.+..+....+.+.+..++...-...+.++.+.++.+. ...+..+... ++..
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~d---~~~~ 91 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALKD---EDGW 91 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTTC---SSHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHcC---CCHH
Confidence 33444444467777777777777777776655566666666666666666667766665433 3333333332 4555
Q ss_pred cHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCC
Q 045069 106 TYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGF 185 (554)
Q Consensus 106 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 185 (554)
.-...+.++.+.++.+....+.. +.. .++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.|.
T Consensus 92 vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 92 VRQSAAVALGQIGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHH-HHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 55555666666665443333333 222 34555555566666665554333333333334555555555555555554
Q ss_pred hhhHHHHHHHH
Q 045069 186 WDKSLQLFDWM 196 (554)
Q Consensus 186 ~~~a~~~~~~m 196 (554)
. ++...+..+
T Consensus 168 ~-~~~~~L~~~ 177 (201)
T 3ltj_A 168 E-RVRAAMEKL 177 (201)
T ss_dssp H-HHHHHHHHH
T ss_pred h-hHHHHHHHH
Confidence 2 344444443
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.65 E-value=11 Score=35.60 Aligned_cols=94 Identities=9% Similarity=-0.048 Sum_probs=64.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHhccCC------CCcchHHHHHHHHHcCCChHHHHHHHHHHHH---cCCCCCHHH--HH
Q 045069 343 VSSALVDMYSKCGYLGLGIQVFETMSE------RNIITYNSVILGLGLHGFTYQAFEFFRDIIE---KGLNPDEST--FS 411 (554)
Q Consensus 343 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~--~~ 411 (554)
+...+.+.|.+.|+++.|.+.|.++.. .-...+-..+..+...+++..+...+++... .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556788888889999999888888763 2234567777888888888888888888754 333333322 11
Q ss_pred HHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 412 ALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 412 ~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
.-...+...+++..|-+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1222345678888888888888775
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.09 E-value=30 Score=32.57 Aligned_cols=57 Identities=11% Similarity=-0.076 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhcC------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045069 242 VSSVLVSMYARCNCMNSAYHVFNSLF------HPDLVTWSALITGYSQQGDYGKALYYFRKLN 298 (554)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 298 (554)
+...+...|.+.|+++.|.+.|.++. ..-...+-..+..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34456666677777777777776661 1233455666777777777777777777654
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.03 E-value=15 Score=30.50 Aligned_cols=31 Identities=10% Similarity=-0.114 Sum_probs=16.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 045069 474 DPAVSGALLSCCHIYGNSDLAEIVAHQLFEN 504 (554)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 504 (554)
-...|......+...|++.+|.++|+..++.
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 179 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRM 179 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444455555555555555555555555554
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.34 E-value=52 Score=26.84 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCC
Q 045069 244 SVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGD 286 (554)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 286 (554)
...+..+.+.+..+....+.+.+..++...-...+.++.+.++
T Consensus 37 ~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 37 RAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3334444444443333333333344444444444444544444
No 282
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=65.79 E-value=36 Score=27.51 Aligned_cols=67 Identities=22% Similarity=0.245 Sum_probs=34.0
Q ss_pred hHHHHHHHHhCCCCCChh-------hHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCCh
Q 045069 459 LEEAYSFIWSLPKPVDPA-------VSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRW 525 (554)
Q Consensus 459 ~~~A~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 525 (554)
++.|+.+|+.+....+.. .-...+..|.+.|.+++|.+++++.....|.+...-..|..+-.+...+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~ 167 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTF 167 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCC
Confidence 355666666655322210 1122344577778888888888877777665555555555444444433
No 283
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=65.64 E-value=54 Score=26.75 Aligned_cols=164 Identities=12% Similarity=0.011 Sum_probs=84.6
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcchhHHHHHHHHHhcCC
Q 045069 259 AYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWPGAVIHGYVIQHGFE 338 (554)
Q Consensus 259 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 338 (554)
...+.+.+..++...-...+..+.+.|..+ +...+.++.. .++...-...+.++...++.+.. ..+..+.. .
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~ 92 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---D 92 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---C
Confidence 334444445566666666666777766643 3333333333 34666666666666666654333 22222222 3
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHHhccCCCCcchHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045069 339 LSVMVSSALVDMYSKCGYLGLGIQVFETMSERNIITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACC 418 (554)
Q Consensus 339 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 418 (554)
++..+-...+.++.+.++.+....+.+.+.+++...-...+.++...|+.+ +...+..+.+ .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 455566666666777666554444444454566655555666666655532 3333333332 345554445555555
Q ss_pred cCCchHHHHHHHHHhHH
Q 045069 419 HGGLVNDGREIFTRMTE 435 (554)
Q Consensus 419 ~~~~~~~a~~~~~~~~~ 435 (554)
+.+. .++...+..+.+
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 5554 344444444444
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.77 E-value=27 Score=28.26 Aligned_cols=151 Identities=7% Similarity=-0.026 Sum_probs=69.8
Q ss_pred HHHHHhcCCchhHHHHhccCC-C---CCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccH--HHHHHHhhcCC
Q 045069 45 VRLYALNNVLPSARILFDKTP-Q---RSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTY--ACITRACSENS 118 (554)
Q Consensus 45 l~~~~~~~~~~~A~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~ 118 (554)
+...+..|+.+....++..-. . .+..-++. +...++.|+.+ +++.+.+.|..|+.... .+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTP-LNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 344466778888888877644 2 22222333 33334556543 44445556655554321 22334444556
Q ss_pred ChhhHHHHHHHHHHhcCCCCH---hHHHHHHHHHHcCCCHhHHHHhhccc-CC---CCcchHHHHHHHHHhCCChhhHHH
Q 045069 119 DLPGLRFVHGGAIVSGLGRDS---ITSSALVTAYSKLSLIDEAIKVFDGV-SD---PDLVLCNSMISGFAHCGFWDKSLQ 191 (554)
Q Consensus 119 ~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~ 191 (554)
+.+-+..+++. .+..++. .-. +.+...+..|+.+-+..+++.- .. .|..-++.+..+.........-.+
T Consensus 84 ~~~~~~~Ll~~---~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 84 RTEILAYMLKH---ATPDLNKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp CHHHHHHHHHH---SCCCTTCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred CHHHHHHHHhc---cCcccccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 66554444422 2222211 111 1233344566666666666544 11 333333444443332222333355
Q ss_pred HHHHHHHCCCCCC
Q 045069 192 LFDWMLRLGKTPD 204 (554)
Q Consensus 192 ~~~~m~~~~~~p~ 204 (554)
+++.+.+.|..++
T Consensus 160 ~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 160 IVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHHCCCCCC
Confidence 5556666665554
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.11 E-value=28 Score=30.36 Aligned_cols=171 Identities=9% Similarity=-0.052 Sum_probs=95.2
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhHHcCC
Q 045069 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRS---VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQL 100 (554)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 100 (554)
.+.+.+.+.|..++...-.+.+...+..|+.+-+..+++.-..++ ..-++. +...+..|+.+-+.-+ .+.|.
T Consensus 45 ~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~~v~~L----l~~ga 119 (285)
T 3kea_A 45 RLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQTVKLF----VKKNW 119 (285)
T ss_dssp HHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHH----HHHCG
T ss_pred HHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcH-HHHHHHcCCHHHHHHH----HhcCC
Confidence 455666666766655444456677788899988888887644332 222333 3344566766544444 44455
Q ss_pred CCCccc---HHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHh-HHHHHHHHHHcCCCHhHHHHhhcccCC---CCcchH
Q 045069 101 KPDNFT---YACITRACSENSDLPGLRFVHGGAIVSGLGRDSI-TSSALVTAYSKLSLIDEAIKVFDGVSD---PDLVLC 173 (554)
Q Consensus 101 ~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 173 (554)
.++... +.+.+...+..|+.+-+. .+.+.|..+... .-.+.+...+..|+.+-+.-+++.-.. .|..-+
T Consensus 120 ~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~ 195 (285)
T 3kea_A 120 RLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF 195 (285)
T ss_dssp GGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBC
T ss_pred CCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCC
Confidence 544432 245566666777765444 444555443221 233445556678888877777654222 232233
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHCCCCCChhh
Q 045069 174 NSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEYT 207 (554)
Q Consensus 174 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 207 (554)
+..+...+..|+. ++.+.+.+.|..|+...
T Consensus 196 t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 196 IPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp CTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred ChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 3323334445554 45566677787777665
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.61 E-value=20 Score=34.44 Aligned_cols=67 Identities=15% Similarity=0.042 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 045069 443 TEHYIYMVKLLGLAGNLEEAYSFIWSLPKPVDP-------AVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKG 509 (554)
Q Consensus 443 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 509 (554)
...++.+++.|...+.++.|..+..+...+... ..+..++..+.-.+++.+|.+.+..+.+.-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 345666777777777777777777665433211 1112234445556666666666666666655443
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=62.09 E-value=63 Score=26.86 Aligned_cols=85 Identities=5% Similarity=-0.067 Sum_probs=38.5
Q ss_pred HHHHhcCChHHHHHHHHHhHHcCCCCCccc--HHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhH--HHHHHHHHHcC
Q 045069 77 RAYALAHRFNDAKSLFKNLLRTQLKPDNFT--YACITRACSENSDLPGLRFVHGGAIVSGLGRDSIT--SSALVTAYSKL 152 (554)
Q Consensus 77 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~ 152 (554)
...++.|+.+-+..+++.+.+.|..++... -.+.+...+..|+.+- ++.+.+.|..++... -...+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 344555666666666665555554444321 1123333444555443 333344554433211 01223333455
Q ss_pred CCHhHHHHhhccc
Q 045069 153 SLIDEAIKVFDGV 165 (554)
Q Consensus 153 g~~~~A~~~~~~~ 165 (554)
|+.+-+..+++..
T Consensus 90 ~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 90 RSPTCLRALLDSA 102 (241)
T ss_dssp TCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcC
Confidence 6666555555543
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=61.88 E-value=18 Score=30.23 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=10.4
Q ss_pred HHHHHHhcCCchhHHHHhccC
Q 045069 44 LVRLYALNNVLPSARILFDKT 64 (554)
Q Consensus 44 ll~~~~~~~~~~~A~~~~~~~ 64 (554)
.+...++.|+.+-+..+++.-
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHcC
Confidence 344445555555555555443
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.42 E-value=57 Score=26.65 Aligned_cols=57 Identities=9% Similarity=0.096 Sum_probs=42.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC
Q 045069 385 HGFTYQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK 442 (554)
Q Consensus 385 ~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 442 (554)
.+....+..+|..|...|+--... -|......+...|++.+|.++|+.-.++ +-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 344668888888888887665544 5777777778888888888888888775 66664
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=57.08 E-value=90 Score=29.13 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=53.0
Q ss_pred HHHHHHhcCCchhHHHHhccCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCccc--HHHHHHHhhcCCC
Q 045069 44 LVRLYALNNVLPSARILFDKTPQRSVF--LWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFT--YACITRACSENSD 119 (554)
Q Consensus 44 ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~ 119 (554)
.+...+..|+.+-+..+++.-..++.. ...+.+...+..|+.+-+.-+ .+.|..++... -.+.+...++.|+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL----LQNKAKVNAKAKDDQTPLHCAARIGH 92 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHH----HHHTCCSSCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 345556677777777777654333221 112233444555665444333 33444433221 1223444445566
Q ss_pred hhhHHHHHHHHHHhcCCCCHhH--HHHHHHHHHcCCCHhHHHHhhccc
Q 045069 120 LPGLRFVHGGAIVSGLGRDSIT--SSALVTAYSKLSLIDEAIKVFDGV 165 (554)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~ 165 (554)
.+-+ +.+.+.|..++... -.+.+...+..|+.+-+..+++.-
T Consensus 93 ~~~v----~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 93 TNMV----KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence 5433 33344454433211 112233345567777666666543
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.28 E-value=38 Score=28.59 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=18.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhHH
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLR 97 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~ 97 (554)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 46778888888888888887654
No 292
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.23 E-value=31 Score=33.12 Aligned_cols=59 Identities=12% Similarity=0.281 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC----h--hH-HHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 408 STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK----T--EH-YIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 408 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~--~~-~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
..++.+++.|...+.++.|..+..+.. ++.+ . .. +..+++.+.-.+++.+|.+.+....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 358999999999999999999999873 2222 1 12 2345677788999999999988753
No 293
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=54.45 E-value=1.3e+02 Score=27.68 Aligned_cols=286 Identities=10% Similarity=0.003 Sum_probs=143.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhhcCC--------CChhhHHHHHHHHHhcC-CHHHHHHHHHHHH----hCCCCC-CHH
Q 045069 242 VSSVLVSMYARCNCMNSAYHVFNSLFH--------PDLVTWSALITGYSQQG-DYGKALYYFRKLN----MQGKKA-DPV 307 (554)
Q Consensus 242 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~----~~~~~~-~~~ 307 (554)
....|...|.+.|+.++..+++....+ .....-..++..+.... ..+.-.++..+.. ...... ...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777788888777777766633 12233445566555532 2333333333332 221000 111
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHhcC-----CchHHHHHHHHHHHHccCChHHHHHHHhccCC------CCcchHH
Q 045069 308 LIASVLAAAAKSANVWPGAVIHGYVIQHGF-----ELSVMVSSALVDMYSKCGYLGLGIQVFETMSE------RNIITYN 376 (554)
Q Consensus 308 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~ 376 (554)
.=..+...|...|++.+|..++..+.+.-- ..-..++-.-+++|...+++.++...+..... +++..-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 122466677778888888777777665311 12244566667777888888887777765431 2222111
Q ss_pred ----HHHHHHH-cCCChHHHHHHHHHHHHcC---CCCC---HHHHHHHHHHHhcCCchHHHHHHHH-HhHHHhCCCCChh
Q 045069 377 ----SVILGLG-LHGFTYQAFEFFRDIIEKG---LNPD---ESTFSALLCACCHGGLVNDGREIFT-RMTEEYGIQAKTE 444 (554)
Q Consensus 377 ----~l~~~~~-~~~~~~~a~~~~~~m~~~g---~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~ 444 (554)
.-...+. ..+++..|...|-+..+.= ..|. ...|..+.. .. .++..+...++. .....+ ..|...
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll-~~~r~el~~~l~~~~~~~~-~~pei~ 257 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IM-LGQSDDVNQLVSGKLAITY-SGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HH-TTCGGGHHHHHHSHHHHTT-CSHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HH-cCCHHHHHHHhcccccccc-CCccHH
Confidence 1122345 6788888888776654310 0111 112322222 22 222222223222 211211 345555
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHcc
Q 045069 445 HYIYMVKLLGLAGNLEEAYSFIWSLPK--PVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAED 522 (554)
Q Consensus 445 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 522 (554)
.+..++.+| ..+++.+..+++..... ..|+..... +..+.+ .--...+.++. .|-.......++..+.-
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h-~~~L~~----~Ir~~~L~~i~--~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAH-LGTLYD----TMLEQNLCRII--EPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHH-HHHHHH----HHHHHHHHHHH--TTCSEEEHHHHHHHHTC-
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHH-HHHHHH----HHHHHHHHHHh--HhhceeeHHHHHHHHCc-
Confidence 555666654 45677777777766532 223332111 111100 00011111121 46666777777766544
Q ss_pred CChhHHHHHHHHHhhcCC
Q 045069 523 GRWDDVMKLRDDIVDNGL 540 (554)
Q Consensus 523 g~~~~A~~~~~~~~~~~~ 540 (554)
..++++..+-+|+..|.
T Consensus 329 -s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -CHHHHHHHHHHHHHTTS
T ss_pred -CHHHHHHHHHHHHHCCC
Confidence 78899999999987654
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=51.42 E-value=60 Score=26.88 Aligned_cols=110 Identities=8% Similarity=0.007 Sum_probs=49.6
Q ss_pred HHHHhcCCchhHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCccc---HHHHHHHhhcCCC
Q 045069 46 RLYALNNVLPSARILFDKTPQR---SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFT---YACITRACSENSD 119 (554)
Q Consensus 46 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~ 119 (554)
...++.|+++....+++.-..+ +..-. +.+...+..|+.+- ++.+.+.|..++... -.+.+...+..|+
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~----v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRIDL----VKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHH----HHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHHH----HHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 3456677777777777654322 22211 23444556666543 344444544333221 1223344444555
Q ss_pred hhhHHHHHHHHHHhcCCCCHhH--HHHHHHHHHcCCCHhHHHHhhcc
Q 045069 120 LPGLRFVHGGAIVSGLGRDSIT--SSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
.+-+ +.+.+.|..++... -...+...+..|+.+-+..+++.
T Consensus 89 ~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 89 LSMV----VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHH----HHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 4433 33444554443211 11223334455666655555544
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.57 E-value=1.1e+02 Score=25.38 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=22.4
Q ss_pred ccchhhHHHHHHHHHHhcCCCChhH--HHHHHHHHHhcCCchhHHHHhcc
Q 045069 16 HQSLSRTKELHALVAKASLLRDPFY--ATKLVRLYALNNVLPSARILFDK 63 (554)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~ 63 (554)
.|+.+.++.+.+.+.+.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 19 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3555555555555555544333221 12234444555555555555544
No 296
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.00 E-value=58 Score=21.70 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=41.1
Q ss_pred HHhHHcCCCCCcccHHHHHHHhhcCC-ChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH
Q 045069 93 KNLLRTQLKPDNFTYACITRACSENS-DLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (554)
+.|.+.|++++..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34566777766544 34556665554 5677888888888777666777766677777666643
No 297
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=46.99 E-value=37 Score=28.88 Aligned_cols=91 Identities=9% Similarity=-0.023 Sum_probs=50.8
Q ss_pred HHHHHhcCChHHHHHHHHHhHHcCCCCCccc-------HHHHHHHhh--cCCChhhHHHHHHHHHHhcC---------C-
Q 045069 76 IRAYALAHRFNDAKSLFKNLLRTQLKPDNFT-------YACITRACS--ENSDLPGLRFVHGGAIVSGL---------G- 136 (554)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~---------~- 136 (554)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+. .
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 3444577888888888887777776666433 233433332 66777777777765443110 0
Q ss_pred CCHhHHHHHHHHHHcCCCHhHHHHhhcccCC
Q 045069 137 RDSITSSALVTAYSKLSLIDEAIKVFDGVSD 167 (554)
Q Consensus 137 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 167 (554)
.+..-.+ .+...+..|+.+-+..+++.-..
T Consensus 89 ~d~~g~t-~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQT-ALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESBC-HHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCC-HHHHHHHcCCHHHHHHHHhCCCC
Confidence 0001122 23344566777777777665433
No 298
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=46.34 E-value=66 Score=30.89 Aligned_cols=52 Identities=12% Similarity=-0.006 Sum_probs=32.1
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCChhHHHHHHHHHh
Q 045069 485 CHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIV 536 (554)
Q Consensus 485 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 536 (554)
..-...++.|...|.++....|.+...|..|+-+....|+.-+|.-+|-+.+
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3334455666666777766677776666666666666666666665555443
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=45.89 E-value=1e+02 Score=23.82 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC
Q 045069 390 QAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK 442 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 442 (554)
.+..+|..|..+|+--... -|......+...|++.+|.++|+.-.++ +-.|-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 3777888888777655543 5667777777788888888888887775 66663
No 300
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=45.30 E-value=22 Score=29.17 Aligned_cols=48 Identities=10% Similarity=0.094 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhHHHhCCCCCh-hHHH-----HHHHHHHhcCChHHHHHHHHhCC
Q 045069 423 VNDGREIFTRMTEEYGIQAKT-EHYI-----YMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 423 ~~~a~~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
.+.|+.+|+.+.+...++.+. .... ..+-.|.+.|.+++|.+++++.-
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~ 141 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHM 141 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 578888888888752221111 1111 23334667777777777777744
No 301
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=44.98 E-value=1.2e+02 Score=24.33 Aligned_cols=80 Identities=15% Similarity=0.036 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 045069 239 YDYVSSVLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318 (554)
Q Consensus 239 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 318 (554)
+..+....+..+...+..+....+.+.+..++...-...+.++...|+.+. ...+.++.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 333334444444454544444444444444555554455555555554322 222222222 2444444455555555
Q ss_pred cCCc
Q 045069 319 SANV 322 (554)
Q Consensus 319 ~g~~ 322 (554)
.++.
T Consensus 103 ~~~~ 106 (201)
T 3ltj_A 103 IGDE 106 (201)
T ss_dssp HCCG
T ss_pred hCcH
Confidence 4443
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.90 E-value=1.6e+02 Score=31.15 Aligned_cols=52 Identities=6% Similarity=-0.126 Sum_probs=29.6
Q ss_pred HHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhCC
Q 045069 413 LLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLAGNLEEAYSFIWSLP 470 (554)
Q Consensus 413 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 470 (554)
++..|...|.++-|.++. . -++.++..--.++++|...|++++|.+.|+++.
T Consensus 816 l~~~L~~~~~~~~a~eL~----~--~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G--WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G--GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHH----h--hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445556666665544332 2 233343333456666777777777777777654
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.48 E-value=82 Score=24.74 Aligned_cols=53 Identities=6% Similarity=0.116 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCCh
Q 045069 390 QAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKT 443 (554)
Q Consensus 390 ~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 443 (554)
.+..+|..|..+|+--... -|......+...|++.+|.++|+.-++. +-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHH
Confidence 3666788888877665543 5666677777788888888888887775 666643
No 304
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=43.86 E-value=1.3e+02 Score=28.05 Aligned_cols=166 Identities=11% Similarity=0.040 Sum_probs=85.4
Q ss_pred HHHHHHHHhcCCCChhH--HHHHHHHHHhcCCchhHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhHHc
Q 045069 24 ELHALVAKASLLRDPFY--ATKLVRLYALNNVLPSARILFDKTPQR---SVFLWNSIIRAYALAHRFNDAKSLFKNLLRT 98 (554)
Q Consensus 24 ~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 98 (554)
.+.+.+.+.|..|+... ..+.+...++.|+.+-+..+++.-... +..-. +.+...+..|+.+ +++.+.+.
T Consensus 28 ~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~ 102 (437)
T 1n11_A 28 PIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTN----MVKLLLEN 102 (437)
T ss_dssp HHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHH----HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHH----HHHHHHhC
Confidence 34555666676665432 234566777889988888888754432 22222 2344445667654 44444555
Q ss_pred CCCCCccc--HHHHHHHhhcCCChhhHHHHHHHHHHhcCCCC---HhHHHHHHHHHHcCCCHhHHHHhhcccCCCC---c
Q 045069 99 QLKPDNFT--YACITRACSENSDLPGLRFVHGGAIVSGLGRD---SITSSALVTAYSKLSLIDEAIKVFDGVSDPD---L 170 (554)
Q Consensus 99 ~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 170 (554)
|..|+... -.+.+...++.|+.+.+..++ +.+..++ ..-. +.+...+..|+.+-+..+++.-..++ .
T Consensus 103 ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 177 (437)
T 1n11_A 103 NANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGK 177 (437)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Confidence 66555432 123444555667776655554 3443322 1111 23444566788877777776544322 2
Q ss_pred chHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCC
Q 045069 171 VLCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPD 204 (554)
Q Consensus 171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 204 (554)
...+. +...+..|+.+ +++.+.+.|..|+
T Consensus 178 ~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~ 206 (437)
T 1n11_A 178 NGLTP-LHVAVHHNNLD----IVKLLLPRGGSPH 206 (437)
T ss_dssp SCCCH-HHHHHHTTCHH----HHHHHGGGTCCSC
T ss_pred CCCCH-HHHHHHcCCHH----HHHHHHhCCCCCC
Confidence 22223 33344556554 4444455554443
No 305
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=43.85 E-value=2.3e+02 Score=27.34 Aligned_cols=68 Identities=7% Similarity=-0.020 Sum_probs=41.3
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHH----HHHHH-hcCCCCchhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 471 KPVDPAVSGALLSCCHIYGNSDLAEIV----AHQLF-ENDPRKGAYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
...|......+-.-+..+|..++-+++ ++..+ +..|++......|-..|.+.|++-+|.+++..+-..
T Consensus 174 ~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 174 KYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 355666666666666666655443221 11111 234666677777777888889999998888888766
No 306
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=43.63 E-value=1.2e+02 Score=25.06 Aligned_cols=194 Identities=10% Similarity=-0.078 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCCChhH--HHHHHHHHHhcCCchhHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHhHHcC
Q 045069 25 LHALVAKASLLRDPFY--ATKLVRLYALNNVLPSARILFDKTPQR---SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQ 99 (554)
Q Consensus 25 ~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 99 (554)
+.+.+.+.|..++... ..+.+...+..|+.+-+..+++.-..+ +....+ .+...+..|+.+ +++.+.+.|
T Consensus 26 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~~ 100 (237)
T 3b7b_A 26 ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGST-CLHLAAKKGHYE----VVQYLLSNG 100 (237)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCC-HHHHHHHTTCHH----HHHHHHTTT
T ss_pred HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHH----HHHHHHhCC
Confidence 4455555665444321 123455556677777777777654322 222222 233334555544 333444444
Q ss_pred -CCCCccc--HHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhH--HHHHHHHHHcCCCHhHHHHhhcccCCCC---cc
Q 045069 100 -LKPDNFT--YACITRACSENSDLPGLRFVHGGAIVSGLGRDSIT--SSALVTAYSKLSLIDEAIKVFDGVSDPD---LV 171 (554)
Q Consensus 100 -~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~ 171 (554)
..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..++ ..
T Consensus 101 ~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~ 176 (237)
T 3b7b_A 101 QMDVNCQDDGGWTPMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176 (237)
T ss_dssp CCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTT
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCC
Confidence 2222211 112333344555544 3344445554443211 1122333345566666655555433322 11
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHHCCCCCChh--hHHHHHHHcccCCccchhhHHHHHHH
Q 045069 172 LCNSMISGFAHCGFWDKSLQLFDWMLRLGKTPDEY--TLVGLISGLWEPSLLSVGQGIHGFCL 232 (554)
Q Consensus 172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~ 232 (554)
-.+ .+...++.|+.+ +++.+.+.|..++.. .-.+.+...+..++...+.++.+.+.
T Consensus 177 g~t-~L~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 177 GDS-PLHIAARENRYD----CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp CCC-HHHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHhCCHh----HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 122 233334455544 333334445444322 11223334445555555555544443
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=41.66 E-value=1e+02 Score=25.63 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCC
Q 045069 389 YQAFEFFRDIIEKGLNPDES-TFSALLCACCHGGLVNDGREIFTRMTEEYGIQAK 442 (554)
Q Consensus 389 ~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 442 (554)
+.+..+|..|...|+--... -|......+...|++.+|..+|+.-+++ +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 46667888888877665543 5667777777788888888888887775 66663
No 308
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=41.44 E-value=74 Score=25.47 Aligned_cols=107 Identities=13% Similarity=0.032 Sum_probs=52.1
Q ss_pred HHHhcCChHHHHHHHHHhHHcCCCCC---cccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhH--HHHHHHHHHcC
Q 045069 78 AYALAHRFNDAKSLFKNLLRTQLKPD---NFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSIT--SSALVTAYSKL 152 (554)
Q Consensus 78 ~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~ 152 (554)
..+..|+.+....++..- +..++ ..-.+ .+...++.|+.+- ++.+.+.|..++... -.+.+...+..
T Consensus 11 ~A~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDT---TYQVDEVDTEGNT-PLNIAVHNNDIEI----AKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp HHHHTTCHHHHHHHHTCT---TCCTTCCCTTSCC-HHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHcC---CCCCCCCCCCCCC-HHHHHHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 345678877776666532 11222 22233 3444445566554 444555666554321 11233444567
Q ss_pred CCHhHHHHhhcccC-C---CCcchHHHHHHHHHhCCChhhHHHHH
Q 045069 153 SLIDEAIKVFDGVS-D---PDLVLCNSMISGFAHCGFWDKSLQLF 193 (554)
Q Consensus 153 g~~~~A~~~~~~~~-~---~~~~~~~~li~~~~~~~~~~~a~~~~ 193 (554)
|+.+-+..+++.-. . .+....+.+ ...+..|+.+-+..++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll 126 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLL 126 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHH
Confidence 88887777774432 1 222222223 3344566655443333
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.10 E-value=1.1e+02 Score=23.54 Aligned_cols=65 Identities=9% Similarity=0.207 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCCCCc---chHHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCCHH
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSERNI---ITYNSVILGLGLHGF--TYQAFEFFRDIIEKGLNPDES 408 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 408 (554)
...++.=|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 45567778788888888888888876532 233344444544322 455677777777766554443
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.65 E-value=88 Score=23.32 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=10.4
Q ss_pred HHHHHHHhcCChhhHHHHHhhc
Q 045069 245 VLVSMYARCNCMNSAYHVFNSL 266 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~ 266 (554)
.++.-|...|+.++|...++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.38 E-value=1e+02 Score=25.98 Aligned_cols=88 Identities=13% Similarity=-0.097 Sum_probs=49.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHc--CCCCCH----HHHHHHHHHHhcCCchHHHHHHHHHhHHHhCCCCChhHHHHHHH
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEK--GLNPDE----STFSALLCACCHGGLVNDGREIFTRMTEEYGIQAKTEHYIYMVK 451 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 451 (554)
-+..+....++++|..++++..+. +.++.. ......+..-.....-.-+..+.+++ . ..++.......+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHHH
Confidence 467788888899998888877652 233211 11122222222222222233333333 2 2445555666777
Q ss_pred HHHhcCChHHHHHHHHhC
Q 045069 452 LLGLAGNLEEAYSFIWSL 469 (554)
Q Consensus 452 ~~~~~g~~~~A~~~~~~~ 469 (554)
.+.+.|+.++|.++|-+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 888888888888887554
No 312
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=38.13 E-value=2.1e+02 Score=25.25 Aligned_cols=200 Identities=9% Similarity=0.011 Sum_probs=96.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHhhcCCCCh--hhHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHH---HHHHHHH
Q 045069 243 SSVLVSMYARCNCMNSAYHVFNSLFHPDL--VTWSALITGYSQQGDY--GKALYYFRKLNMQGKKADPVL---IASVLAA 315 (554)
Q Consensus 243 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~g~~--~~a~~~~~~m~~~~~~~~~~~---~~~l~~~ 315 (554)
...++.-|...|+.++|...++++..|.- ..-..++......++. +.+-.++..+.. ++-+.... +..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 46788889999999999999999866542 2223334433444432 345566677753 43333333 3333333
Q ss_pred HhccC-CcchhHHHHHHHHH----hcCCchHHHHHHHHHHHHccCC--hHHHHHHHhc------cC----CCCc------
Q 045069 316 AAKSA-NVWPGAVIHGYVIQ----HGFELSVMVSSALVDMYSKCGY--LGLGIQVFET------MS----ERNI------ 372 (554)
Q Consensus 316 ~~~~g-~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~------~~----~~~~------ 372 (554)
+.... +...|..++..+.. .++-|........-..-...|. ...|..++.. +. .++.
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~ee 164 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNH 164 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHH
Confidence 33222 44455555444432 2222211111000000000000 1222222210 11 0111
Q ss_pred --chHHHHHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHHHhHHHhCCCCChhH
Q 045069 373 --ITYNSVILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCHGGL--VNDGREIFTRMTEEYGIQAKTEH 445 (554)
Q Consensus 373 --~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 445 (554)
.....++.-|...|+.++|.+.++++....+. .......+..+..+.++ .+....++..+.+. ++-+....
T Consensus 165 lkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~-~~ls~~q~ 239 (307)
T 2zu6_B 165 LVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKS-STITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH-CSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHC-CCCCHHHH
Confidence 12456777788888888888888887421111 12234455556555432 45566777777764 55544433
No 313
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=38.07 E-value=1.2e+02 Score=24.99 Aligned_cols=16 Identities=6% Similarity=-0.010 Sum_probs=8.0
Q ss_pred HHcCCCHhHHHHhhcc
Q 045069 149 YSKLSLIDEAIKVFDG 164 (554)
Q Consensus 149 ~~~~g~~~~A~~~~~~ 164 (554)
.+..|+.+-+..+++.
T Consensus 84 A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHTTCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3445555555555544
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=37.35 E-value=1.3e+02 Score=22.45 Aligned_cols=65 Identities=9% Similarity=0.207 Sum_probs=40.4
Q ss_pred HHHHHHHHHccCChHHHHHHHhccCCCCc---chHHHHHHHHHcCCC--hHHHHHHHHHHHHcCCCCCHH
Q 045069 344 SSALVDMYSKCGYLGLGIQVFETMSERNI---ITYNSVILGLGLHGF--TYQAFEFFRDIIEKGLNPDES 408 (554)
Q Consensus 344 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 408 (554)
...++.=|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 35567777788888888888888875532 223334444544432 356777777777766555444
No 315
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.26 E-value=1.7e+02 Score=23.90 Aligned_cols=19 Identities=11% Similarity=-0.057 Sum_probs=10.6
Q ss_pred HHHHHhcCCchhHHHHhcc
Q 045069 45 VRLYALNNVLPSARILFDK 63 (554)
Q Consensus 45 l~~~~~~~~~~~A~~~~~~ 63 (554)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444556666666665544
No 316
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=36.73 E-value=2e+02 Score=24.56 Aligned_cols=248 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCC----hHHHHHHHHHhHHcCCC
Q 045069 26 HALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHR----FNDAKSLFKNLLRTQLK 101 (554)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~----~~~a~~~~~~m~~~~~~ 101 (554)
...+.+.--.+++..-..-+..+.+.|..+....+.+.+..++...-...+.++.+.|. ....+.++..+... .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d 102 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--D 102 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--C
Q ss_pred CCcccHHHHHHHhhcCC--ChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHH
Q 045069 102 PDNFTYACITRACSENS--DLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISG 179 (554)
Q Consensus 102 p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 179 (554)
++...-...+.++...+ +......+...+...=-.++..+-...+.++...|+.+....+.+.+..++...-...+.+
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~a 182 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFA 182 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHH
Q ss_pred HHhCC-ChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccCCccchhhHHHHHHHHhcCCCchhHHHHHHHHHHhcCChhh
Q 045069 180 FAHCG-FWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEPSLLSVGQGIHGFCLKSSFDSYDYVSSVLVSMYARCNCMNS 258 (554)
Q Consensus 180 ~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 258 (554)
+...+ +...+...+..+.. .++..+-...+.++.+.|+...
T Consensus 183 L~~~~~~~~~~~~~L~~~l~--------------------------------------d~~~~vR~~A~~aL~~~~~~~~ 224 (280)
T 1oyz_A 183 ININKYDNSDIRDCFVEMLQ--------------------------------------DKNEEVRIEAIIGLSYRKDKRV 224 (280)
T ss_dssp HHHHTCCCHHHHHHHHHHTT--------------------------------------CSCHHHHHHHHHHHHHTTCGGG
T ss_pred HHhhccCcHHHHHHHHHHhc--------------------------------------CCCHHHHHHHHHHHHHhCCHhh
Q ss_pred HHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 045069 259 AYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAK 318 (554)
Q Consensus 259 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 318 (554)
...+...+..++ .....+.++.+.|+ ..+...+.++... .++.......+....+
T Consensus 225 ~~~L~~~l~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~--~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 225 LSVLCDELKKNT--VYDDIIEAAGELGD-KTLLPVLDTMLYK--FDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHHHHTSSS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT--SSCCHHHHHHHHHHTC
T ss_pred HHHHHHHhcCcc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc--CCCcHHHHHHHHHhhc
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=36.69 E-value=1.7e+02 Score=23.78 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=32.8
Q ss_pred HHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 045069 274 WSALITGY---SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 274 ~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 321 (554)
+.-+|+++ .+..+++.|+-.+-+|.+.| .|....-..++.+.-.-|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 33445554 45689999999999999999 7766666666666555543
No 318
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.38 E-value=67 Score=23.99 Aligned_cols=49 Identities=10% Similarity=0.079 Sum_probs=39.4
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCc
Q 045069 6 HFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVL 54 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 54 (554)
+..++.+|........+..+++.+.+.+...+..|.-..|+.+...|-+
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4567777777777888999999999888777887777778999988853
No 319
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=36.36 E-value=68 Score=24.29 Aligned_cols=50 Identities=10% Similarity=0.026 Sum_probs=39.5
Q ss_pred HHHHHHHhhhccchhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcCCch
Q 045069 6 HFLVLELSKSHQSLSRTKELHALVAKASLLRDPFYATKLVRLYALNNVLP 55 (554)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 55 (554)
+..++.+|........|..+++.+.+.+...+..|.-..|+.+...|-+.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 45677777777778888999999988887778877777788888888543
No 320
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.98 E-value=72 Score=28.87 Aligned_cols=91 Identities=10% Similarity=-0.052 Sum_probs=46.9
Q ss_pred HHHHHHHhcCCchhHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCC
Q 045069 43 KLVRLYALNNVLPSARILFDKTPQRS---VFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSD 119 (554)
Q Consensus 43 ~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 119 (554)
+.+...+..|+.+-+..+++.-..++ ..-++ .+...+..|+.+- ++.+.+.|..++...-.+.+...+..|+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~g~t~L~~A~~~g~ 96 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDT----AKYLASVGEVHSLWHGQKPIHLAVMANK 96 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHH----HHHHHHHCCCCCCBTTBCHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHH----HHHHHHCCCCccccCCCCHHHHHHHcCC
Confidence 33455566777777777776533222 22222 2333445565543 3334444544444333334455556677
Q ss_pred hhhHHHHHHHHHHhcCCCC
Q 045069 120 LPGLRFVHGGAIVSGLGRD 138 (554)
Q Consensus 120 ~~~a~~~~~~~~~~~~~~~ 138 (554)
.+-+..+++.....|..++
T Consensus 97 ~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 97 TDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHhccccCCCHH
Confidence 7777777766555454433
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.73 E-value=1.5e+02 Score=22.75 Aligned_cols=63 Identities=6% Similarity=-0.047 Sum_probs=42.6
Q ss_pred HHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH
Q 045069 92 FKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 92 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (554)
.+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.++..+..|.-..+..+...|-+
T Consensus 15 ~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3446677877655433 45555556667888999999998888777777766667777777754
No 322
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.09 E-value=1.9e+02 Score=23.48 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=34.6
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 045069 276 ALITGY---SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 276 ~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 321 (554)
-+|+++ .+..+++.|+-.+-+|.+.|-.|....-..++.+.-.-|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 345554 4568999999999999999988887777777766655553
No 323
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.07 E-value=78 Score=24.34 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC----CCCcchHHHHHHHHHhcCChH
Q 045069 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP----QRSVFLWNSIIRAYALAHRFN 86 (554)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~ 86 (554)
.+.+.+.+.|+.+++.-. .++..+...+..-.|.++++.+. ..+..|-...|..+...|-..
T Consensus 13 ~~~~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 13 RLRMSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 344556667766665544 44555556666667777766653 334445455566666666543
No 324
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.50 E-value=2e+02 Score=23.67 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHH--HHH-----HHHHHHhcCCchHHHHHHHHHhHH
Q 045069 388 TYQAFEFFRDIIEKGLNPDES--TFS-----ALLCACCHGGLVNDGREIFTRMTE 435 (554)
Q Consensus 388 ~~~a~~~~~~m~~~g~~p~~~--~~~-----~ll~~~~~~~~~~~a~~~~~~~~~ 435 (554)
.+.|+.+|+.+.+.--.|+.. ... ..+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 788999999998864222222 122 334568999999999999999855
No 325
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.43 E-value=50 Score=20.60 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHH-HccCChhHHHHHHHHHhhcCCccCCC
Q 045069 496 IVAHQLFENDPRKGAYKVMLSNTY-AEDGRWDDVMKLRDDIVDNGLRKEAG 545 (554)
Q Consensus 496 ~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~ 545 (554)
+.++.+.+..|+-.... +-.++ ...|+.+.|+..+-.|...+..++.|
T Consensus 11 e~l~~L~emFP~ld~~~--I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~~ 59 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEV--IRSVLEAQRGNKDAAINSLLQMGEEPSGPSSG 59 (59)
T ss_dssp HHHHHHHHHCSSSCHHH--HHHHHTTTTTCHHHHHHHHHHSSCCCCSCCCC
T ss_pred HHHHHHHHHCCCCCHHH--HHHHHHHcCCCHHHHHHHHHcCcCCCCCCCCC
Confidence 33444445566533322 22233 45788888988888888777777654
No 326
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.65 E-value=77 Score=23.83 Aligned_cols=45 Identities=7% Similarity=0.050 Sum_probs=19.5
Q ss_pred HHHHHhhhcc-chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 045069 8 LVLELSKSHQ-SLSRTKELHALVAKASLLRDPFYATKLVRLYALNN 52 (554)
Q Consensus 8 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 52 (554)
.++.+|.... ....+.++++.+.+.+...+..|.-.-|+.+...|
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3333443333 34444455555544444444444444444444444
No 327
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=32.48 E-value=67 Score=24.52 Aligned_cols=63 Identities=10% Similarity=-0.039 Sum_probs=41.7
Q ss_pred HHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHh
Q 045069 93 KNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLID 156 (554)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 156 (554)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 445667777655433 344445455667778888888887776667766666677777777543
No 328
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.40 E-value=1.1e+02 Score=20.25 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccC-CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCCh
Q 045069 296 KLNMQGKKADPVLIASVLAAAAKSA-NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYL 357 (554)
Q Consensus 296 ~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (554)
.+.+.|++.+..- ..++..+...+ ..-.+.++.+.+.+.+...+..|....++.+...|-+
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4566777777654 34556665554 5677888888888776666666766677777766643
No 329
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.18 E-value=74 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCChhhHHHHHhhcC
Q 045069 244 SVLVSMYARCNCMNSAYHVFNSLF 267 (554)
Q Consensus 244 ~~l~~~~~~~~~~~~a~~~~~~~~ 267 (554)
..++.-|...|+.++|...++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 344444444455555555554443
No 330
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.94 E-value=45 Score=23.38 Aligned_cols=38 Identities=16% Similarity=-0.070 Sum_probs=28.8
Q ss_pred CCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHH
Q 045069 52 NVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAK 89 (554)
Q Consensus 52 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 89 (554)
.+.+.|.++++.++.....+|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887766655443
No 331
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=31.88 E-value=1.3e+02 Score=23.12 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=44.7
Q ss_pred HHhHHcCCCCCcccHHHHHHHhhcCC-ChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHh
Q 045069 93 KNLLRTQLKPDNFTYACITRACSENS-DLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLID 156 (554)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 156 (554)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.-.-+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 446677888766544 3455555555 67889999999998887777777666777787777543
No 332
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.81 E-value=4e+02 Score=26.62 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhc
Q 045069 73 NSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSE 116 (554)
Q Consensus 73 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 116 (554)
-.+|-.|.|.|++++|.++.++.... ..--...|...+..++.
T Consensus 156 Wa~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 156 WALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHh
Confidence 35777888999999999888766432 22122466666777663
No 333
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=31.37 E-value=2.5e+02 Score=24.02 Aligned_cols=161 Identities=10% Similarity=-0.021 Sum_probs=78.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCchHHHHHHHHHhHHHhCCCCChhHHHHHHHHHHhc
Q 045069 378 VILGLGLHGFTYQAFEFFRDIIEKGLNPDESTFSALLCACCH-GGLVNDGREIFTRMTEEYGIQAKTEHYIYMVKLLGLA 456 (554)
Q Consensus 378 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 456 (554)
++...-+.+++++..+..+++.+.+...+..--+.|--+|-. .|....+++++..+.++.....+ .-...+++.|...
T Consensus 37 ~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~-~~~~~~i~~yr~k 115 (261)
T 3ubw_A 37 QAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGG-EDKLKMIREYRQM 115 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhcccc-HHHHHHHHHHHHH
Confidence 344455677788888777777776666666555544444422 34445566666655443111122 1122333333211
Q ss_pred ------CChHHHHHHHHhCC----CCCChhhHHHHHHH-HH------hcC-----ChHHHHHHHHHHHhc-----CCCCc
Q 045069 457 ------GNLEEAYSFIWSLP----KPVDPAVSGALLSC-CH------IYG-----NSDLAEIVAHQLFEN-----DPRKG 509 (554)
Q Consensus 457 ------g~~~~A~~~~~~~~----~~~~~~~~~~l~~~-~~------~~~-----~~~~A~~~~~~~~~~-----~p~~~ 509 (554)
.--.+.+.+++... ..+....|..-+.+ |. ..| -.+.|.+.|+++.+. .|.+|
T Consensus 116 Ie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThP 195 (261)
T 3ubw_A 116 VETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHP 195 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCc
Confidence 01123444444431 11122222221111 11 111 245667777776553 46666
Q ss_pred hhHHHHHH----HHHccCChhHHHHHHHHHhhcC
Q 045069 510 AYKVMLSN----TYAEDGRWDDVMKLRDDIVDNG 539 (554)
Q Consensus 510 ~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~~ 539 (554)
.-+....+ .|.-.++.++|.++.+++.+..
T Consensus 196 irLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~A 229 (261)
T 3ubw_A 196 IRLGLALNFSVFYYEILNSPDRACRLAKAAFDDA 229 (261)
T ss_dssp HHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 54333222 3456899999999888776543
No 334
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=30.60 E-value=1e+02 Score=26.07 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=12.4
Q ss_pred ccchhhHHHHHHHHHHhcCCCC
Q 045069 16 HQSLSRTKELHALVAKASLLRD 37 (554)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~ 37 (554)
.|+.+.++.+.+.+.+.|..++
T Consensus 15 ~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 15 RGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HTCGGGGTTHHHHHHHHTCCTT
T ss_pred hCCHHHHHHHHHHHHhcCCCcc
Confidence 3555555556666655555544
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.60 E-value=93 Score=23.90 Aligned_cols=45 Identities=9% Similarity=0.017 Sum_probs=23.2
Q ss_pred HHHHHhhhcc-chhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhcC
Q 045069 8 LVLELSKSHQ-SLSRTKELHALVAKASLLRDPFYATKLVRLYALNN 52 (554)
Q Consensus 8 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 52 (554)
.++.+|.... ....+..+++.+.+.+...+..|.-.-|+.+...|
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 4444444444 45555555555555554445544444455555555
No 336
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=30.50 E-value=2.3e+02 Score=23.30 Aligned_cols=50 Identities=12% Similarity=0.250 Sum_probs=36.6
Q ss_pred hhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCC
Q 045069 272 VTWSALITGY---SQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSAN 321 (554)
Q Consensus 272 ~~~~~l~~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 321 (554)
..+.-+|+++ .+..+++.|+-++-+|.+.|-.|....-..++.+.-.-|.
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGl 85 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGL 85 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3344455655 4568999999999999999988887777777777655553
No 337
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.22 E-value=82 Score=24.03 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC----CCCcchHHHHHHHHHhcCChH
Q 045069 24 ELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP----QRSVFLWNSIIRAYALAHRFN 86 (554)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~ 86 (554)
.+.+.+.+.|+.+++.-. .++..+...+..-.|.++++.+. ..+..|-...|+.+...|-..
T Consensus 8 ~~~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 8 EALETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 345567777877777655 44566666666677777777664 334455555677777777554
No 338
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.20 E-value=3.6e+02 Score=28.51 Aligned_cols=126 Identities=10% Similarity=-0.082 Sum_probs=69.2
Q ss_pred HHHHHHHhcCChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCcch
Q 045069 245 VLVSMYARCNCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKALYYFRKLNMQGKKADPVLIASVLAAAAKSANVWP 324 (554)
Q Consensus 245 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 324 (554)
.++..+...|..+-|.++..-++. ++..-..+..+|...|++++|...|++.. .|+..+...... ...
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~ 882 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LRE 882 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhh
Confidence 366677778888877765544444 55554567888999999999999998763 233221100000 000
Q ss_pred hHHHHHHHHHhc-CCchHHHHHHHHHHHHccCChHHHHHHHhccC----CCCc----chHHHHHHHHHcC
Q 045069 325 GAVIHGYVIQHG-FELSVMVSSALVDMYSKCGYLGLGIQVFETMS----ERNI----ITYNSVILGLGLH 385 (554)
Q Consensus 325 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~l~~~~~~~ 385 (554)
...++. ... ......-|..++..+.+.+.++.+.++-+... ..|. ..|..+..+.+..
T Consensus 883 ~~~ll~---~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 883 FQEIAE---KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHH---HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccC---cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 000110 000 01223467777888888888777766544332 2222 2455566555443
No 339
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.06 E-value=2e+02 Score=22.44 Aligned_cols=69 Identities=10% Similarity=-0.033 Sum_probs=48.4
Q ss_pred HHHHHHHH-HhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHh--cCCCCHhHHHHHHHHHHcCCCH
Q 045069 86 NDAKSLFK-NLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVS--GLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 86 ~~a~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~ 155 (554)
+.+++-+. .+.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 44554444 355668887554 345667777777888999999999988 7777776666667777777754
No 340
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=29.29 E-value=1e+02 Score=24.15 Aligned_cols=64 Identities=6% Similarity=0.036 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC------CCCcchHHHHHHHHHhcCChHH
Q 045069 23 KELHALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP------QRSVFLWNSIIRAYALAHRFND 87 (554)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~ 87 (554)
.++.+.+.+.|+.+++.-. .++..+...+..-.|.++++.+. ..+..|--.-|+.+...|-..+
T Consensus 18 ~~~~~~L~~~g~r~T~qR~-~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 18 ERFKKILRQGGLKYTKQRE-VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHTCCCCHHHH-HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 5667777888888877654 55677777777788888887653 2344455556777777776543
No 341
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.21 E-value=1.9e+02 Score=23.57 Aligned_cols=85 Identities=7% Similarity=-0.044 Sum_probs=42.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHh---HHHHHHHHHHc
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSI---TSSALVTAYSK 151 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~ 151 (554)
.+...++.|+.+....+++.-...-..++....+.| ...+..|+.+-+ +.+.+.|..++.. -++ .+...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTEIV----EFLLQLGVPVNDKDDAGWS-PLHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHHHH----HHHHHTTCCSCCCCTTSCC-HHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHHHH----HHHHHhCCCCCCcCCCCCC-HHHHHHH
Confidence 355566778888887777654322122233333333 333455665444 3444556544321 122 2233345
Q ss_pred CCCHhHHHHhhccc
Q 045069 152 LSLIDEAIKVFDGV 165 (554)
Q Consensus 152 ~g~~~~A~~~~~~~ 165 (554)
.|+.+-+..+++.-
T Consensus 83 ~~~~~~v~~Ll~~g 96 (231)
T 3aji_A 83 AGXDEIVKALLVKG 96 (231)
T ss_dssp HTCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHcC
Confidence 56666655555543
No 342
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.20 E-value=3e+02 Score=24.29 Aligned_cols=56 Identities=7% Similarity=0.026 Sum_probs=34.9
Q ss_pred HHHHHHHHHcCCCHhHHHHhhcccCCCCcc--hHHHHHHHHHhCCCh--hhHHHHHHHHH
Q 045069 142 SSALVTAYSKLSLIDEAIKVFDGVSDPDLV--LCNSMISGFAHCGFW--DKSLQLFDWML 197 (554)
Q Consensus 142 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~--~~a~~~~~~m~ 197 (554)
...++.-|...|+.++|...++++..|.-. ....++......++. +.+-.++..+.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~ 65 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC 65 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 456788898999999999999998765411 122333333333332 34455666664
No 343
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=28.85 E-value=67 Score=22.16 Aligned_cols=19 Identities=11% Similarity=-0.080 Sum_probs=8.8
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 045069 482 LSCCHIYGNSDLAEIVAHQ 500 (554)
Q Consensus 482 ~~~~~~~~~~~~A~~~~~~ 500 (554)
...+.+.|++++|++..++
T Consensus 22 Ae~ll~~gkydeAIech~k 40 (97)
T 2crb_A 22 ADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 3344444555555444443
No 344
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.83 E-value=3.2e+02 Score=24.24 Aligned_cols=128 Identities=11% Similarity=0.093 Sum_probs=70.6
Q ss_pred ChHHHHHHHHHhHHc-C----CCCCcccHHHH---HHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH
Q 045069 84 RFNDAKSLFKNLLRT-Q----LKPDNFTYACI---TRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 84 ~~~~a~~~~~~m~~~-~----~~p~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (554)
+-++|.-+|..+... + ..|+....... +..+.+.-+ -+++..+.+.|+.|...++.-++..+++.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888877643 1 33443322221 222222222 35677778888888888888888888887788
Q ss_pred hHHHHhhcccCC--CCcchHHH--HH----HHHHhCCChhhHHHHHHHHHHCCCCCChhhHHHHHHHcccC
Q 045069 156 DEAIKVFDGVSD--PDLVLCNS--MI----SGFAHCGFWDKSLQLFDWMLRLGKTPDEYTLVGLISGLWEP 218 (554)
Q Consensus 156 ~~A~~~~~~~~~--~~~~~~~~--li----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 218 (554)
+.+.++|+.+.. +....+-+ ++ ....+..++++...++.... ...+......++......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~---p~~~~~di~~li~~A~~l 307 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTL---PNLGLVQMEKTINQVFEM 307 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTT---TCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhC
Confidence 888888887653 22222111 11 11223346777766666532 123334555555444333
No 345
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.56 E-value=3.2e+02 Score=24.05 Aligned_cols=40 Identities=3% Similarity=-0.049 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCCCHhH--HHHHHHHHHcCCCHhHHHHhhcc
Q 045069 125 FVHGGAIVSGLGRDSIT--SSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 125 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
.+.+.+.+.|..++... -.+-+...+..|..+.+..+++.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~ 261 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 261 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh
Confidence 34444555665443221 11223344556666666655543
No 346
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.84 E-value=94 Score=23.71 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=37.3
Q ss_pred HHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH
Q 045069 93 KNLLRTQLKPDNFTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 93 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (554)
+.+.+.|++++..-. .++..+...+ .-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 8 ~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 345556777655433 2334444444 667888888887777666666655566667766654
No 347
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.55 E-value=85 Score=23.39 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=28.3
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH
Q 045069 110 ITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 110 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (554)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|-+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 3444444555666777777777666555666655566666666654
No 348
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.02 E-value=1e+02 Score=23.49 Aligned_cols=58 Identities=2% Similarity=-0.099 Sum_probs=26.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhcCCchhHHHHhccCC----CCCcchHHHHHHHHHhcCCh
Q 045069 26 HALVAKASLLRDPFYATKLVRLYALNNVLPSARILFDKTP----QRSVFLWNSIIRAYALAHRF 85 (554)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~ 85 (554)
.+.+.+.|+.+++.-. .++..+...+ .-.|.++++.+. ..+..|--.-|..+...|-.
T Consensus 7 ~~~L~~~g~r~T~qR~-~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQRQ-LVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHHTTTCCCCHHHH-HHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHHHH-HHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3445555655555433 2334444444 455555555442 22333333345555555543
No 349
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=24.52 E-value=56 Score=20.40 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHCCCCCChhhHHHHHHHc-ccCC
Q 045069 186 WDKSLQLFDWMLRLGKTPDEYTLVGLISGL-WEPS 219 (554)
Q Consensus 186 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~ 219 (554)
.++|.+.|.+|.+..-.+...||...++.+ ++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 467888888887765566677888887766 4443
No 350
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.45 E-value=1.2e+02 Score=21.21 Aligned_cols=38 Identities=13% Similarity=0.022 Sum_probs=27.8
Q ss_pred CChhhHHHHHhhcCCCChhhHHHHHHHHHhcCCHHHHH
Q 045069 254 NCMNSAYHVFNSLFHPDLVTWSALITGYSQQGDYGKAL 291 (554)
Q Consensus 254 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 291 (554)
...+.|.+++..++...+.+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 35677778888877777788888888887667655543
No 351
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.89 E-value=2.3e+02 Score=21.14 Aligned_cols=61 Identities=10% Similarity=0.186 Sum_probs=41.3
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhccC-CcchhHHHHHHHHHhcCCchHHHHHHHHHHHHccCCh
Q 045069 296 KLNMQGKKADPVLIASVLAAAAKSA-NVWPGAVIHGYVIQHGFELSVMVSSALVDMYSKCGYL 357 (554)
Q Consensus 296 ~m~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 357 (554)
.+.+.|++++..-.. ++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-+
T Consensus 8 ~l~~~g~r~T~qR~~-Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVK-ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 356678887776443 445555555 6788999999998887777776666666667666643
No 352
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.80 E-value=2.6e+02 Score=21.80 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=6.3
Q ss_pred CChHHHHHHHHh
Q 045069 457 GNLEEAYSFIWS 468 (554)
Q Consensus 457 g~~~~A~~~~~~ 468 (554)
|++-+|-++++.
T Consensus 46 g~yfeaHEvLEe 57 (161)
T 2ijq_A 46 GEFHESHDCFED 57 (161)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCchHHHHHHHH
Confidence 555555555544
No 353
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=23.68 E-value=1.6e+02 Score=25.00 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=10.8
Q ss_pred HhcCChHHHHHHHHHhHHcC
Q 045069 80 ALAHRFNDAKSLFKNLLRTQ 99 (554)
Q Consensus 80 ~~~~~~~~a~~~~~~m~~~~ 99 (554)
++.|+.+.+..+++...+.+
T Consensus 21 ~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 21 VAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHTTCSSTTTTHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHHHhhcc
Confidence 44566665555555554443
No 354
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.34 E-value=1.4e+02 Score=22.42 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=33.0
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCH
Q 045069 109 CITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLI 155 (554)
Q Consensus 109 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 155 (554)
.++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 45556666666778888888888877767776666667777777654
No 355
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.28 E-value=2.7e+02 Score=21.74 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=35.6
Q ss_pred cCCChHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HhcCCchHHHHHHHHHhHHH
Q 045069 384 LHGFTYQAFEFFRDIIEKGLNP--DESTFSALLC-A-----CCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 384 ~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~-~-----~~~~~~~~~a~~~~~~~~~~ 436 (554)
..|++-+|.++++......-.| ....|..||. . ..+.|+...|..++.+....
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4478888888888877754444 3445666666 2 23567888888888877664
No 356
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=22.93 E-value=2.5e+02 Score=21.24 Aligned_cols=57 Identities=12% Similarity=-0.066 Sum_probs=29.0
Q ss_pred HHHHHHhcCCchhHHHHhccCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcc
Q 045069 44 LVRLYALNNVLPSARILFDKTP----QRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNF 105 (554)
Q Consensus 44 ll~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 105 (554)
.+...++.|+.+....+++... ..+..-++ .+...+..|+. ++++.+.+.|..++..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~----~~v~~Ll~~g~~~~~~ 71 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST-PLHFAAGYNRV----SVVEYLLQHGADVHAK 71 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCC-HHHHHHHTTCH----HHHHHHHHTTCCTTCC
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCCC-HHHHHHHcChH----HHHHHHHhcCCCCCcc
Confidence 3445566788888877776433 11211122 33344455654 3444455556555443
No 357
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.42 E-value=2.6e+02 Score=22.11 Aligned_cols=91 Identities=12% Similarity=0.011 Sum_probs=43.3
Q ss_pred HHhcCCchhHHHHhccCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCccc---HHHHHHHhhc-CCChhh
Q 045069 48 YALNNVLPSARILFDKTPQR-SVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFT---YACITRACSE-NSDLPG 122 (554)
Q Consensus 48 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~-~~~~~~ 122 (554)
.++.|+++....++..-... +...-.+.+...+..|+.+.-.++.+.+.+.|..++... .+.|..++.. ..+...
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~ 92 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITG 92 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHH
T ss_pred HHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhh
Confidence 35566766666666543211 100011234444556666655666777777776665532 2223222221 122333
Q ss_pred HHHHHHHHHHhcCCCC
Q 045069 123 LRFVHGGAIVSGLGRD 138 (554)
Q Consensus 123 a~~~~~~~~~~~~~~~ 138 (554)
..++.+.+++.|..++
T Consensus 93 ~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 93 TTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHTTCCSS
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3455555556655443
No 358
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.91 E-value=3.1e+02 Score=22.26 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=23.5
Q ss_pred HHHHHhcCCchhHHHHhccC-CC---CCcchHHHHHHHHHhcCChHHHHHHHH
Q 045069 45 VRLYALNNVLPSARILFDKT-PQ---RSVFLWNSIIRAYALAHRFNDAKSLFK 93 (554)
Q Consensus 45 l~~~~~~~~~~~A~~~~~~~-~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~ 93 (554)
+...++.|+.+....+++.- .. .+..-++ .+...+..|+.+-+..+++
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~ 58 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGET-ALHIAALYDNLEAAMVLME 58 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCC-HHHHHHHcCCHHHHHHHHH
Confidence 44556677777777777652 11 2222222 2333345566554444443
No 359
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=21.83 E-value=1.6e+02 Score=26.31 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHhHHH
Q 045069 393 EFFRDIIEKGLNPDESTFSALLCACCHGGLVNDGREIFTRMTEE 436 (554)
Q Consensus 393 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 436 (554)
++++.+.+.|+.|...++..++..+.+.=.++.+.++++-+...
T Consensus 214 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~e 257 (334)
T 2qq8_A 214 KLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRD 257 (334)
T ss_dssp HHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHc
Confidence 35566677788888888887887777777788888888888774
No 360
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.73 E-value=98 Score=22.73 Aligned_cols=54 Identities=13% Similarity=-0.046 Sum_probs=38.9
Q ss_pred ccHHHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHh
Q 045069 105 FTYACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKV 161 (554)
Q Consensus 105 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 161 (554)
..|.-.|...+.+++.+-|+++++..++.| +.+.|.+.+-.|-..=++|-++++
T Consensus 33 kLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 33 SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 345666777777888888888888877765 667777777777766666666665
No 361
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=21.25 E-value=1.8e+02 Score=29.09 Aligned_cols=62 Identities=11% Similarity=0.075 Sum_probs=45.9
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCchhHHHHHHHHHccCC
Q 045069 460 EEAYSFIWSLPKPVDPAVSGALLSCCHIYGNSDLAEIVAHQLFENDPRKGAYKVMLSNTYAEDGR 524 (554)
Q Consensus 460 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 524 (554)
+.|.++++-|. ...............|++..|.++.+.++..+|++......++++|.+.|.
T Consensus 437 ~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 437 DSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34445555443 233334445566788999999999999999999999999999998887663
No 362
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.18 E-value=3.3e+02 Score=22.05 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=9.3
Q ss_pred HHHHHhcCCchhHHHHhcc
Q 045069 45 VRLYALNNVLPSARILFDK 63 (554)
Q Consensus 45 l~~~~~~~~~~~A~~~~~~ 63 (554)
+...+..|+.+-+..+++.
T Consensus 41 L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3444445555555555443
No 363
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.98 E-value=4.2e+02 Score=23.18 Aligned_cols=43 Identities=12% Similarity=-0.170 Sum_probs=19.6
Q ss_pred hcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcc
Q 045069 115 SENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDG 164 (554)
Q Consensus 115 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 164 (554)
++.|+.+- .+.+++.|..++..+ .+...++.|+.+-+.-+++.
T Consensus 281 ~~~g~~~i----v~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~~ 323 (337)
T 4g8k_A 281 VELKLKKI----AELLCKRGASTDCGD---LVMTARRNYDHSLVKVLLSH 323 (337)
T ss_dssp HHTTCHHH----HHHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCCHHH----HHHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHHC
Confidence 34455433 333345565555433 23333455565554444443
No 364
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.89 E-value=2.1e+02 Score=19.58 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHcCCCHhHHHHhhcccCCCCcchHHHHHHHHHhCCCh
Q 045069 123 LRFVHGGAIVSGLGRDSITSSALVTAYSKLSLIDEAIKVFDGVSDPDLVLCNSMISGFAHCGFW 186 (554)
Q Consensus 123 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~ 186 (554)
...+++.+.+.|+- +..-+..+-. .....+.|..+++.++..+..+|..++.++...+..
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 33455555555543 2332222222 245666777777777766667777777776666543
No 365
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.85 E-value=2.4e+02 Score=25.99 Aligned_cols=23 Identities=9% Similarity=-0.042 Sum_probs=12.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 045069 481 LLSCCHIYGNSDLAEIVAHQLFE 503 (554)
Q Consensus 481 l~~~~~~~~~~~~A~~~~~~~~~ 503 (554)
+...+...|+.+.|..+++++..
T Consensus 133 i~~~yl~~~d~~~a~~~l~~~~~ 155 (393)
T 4b4t_O 133 IARTYLLKNDLVKARDLLDDLEK 155 (393)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555666666666665544
No 366
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=20.79 E-value=18 Score=26.56 Aligned_cols=71 Identities=10% Similarity=0.029 Sum_probs=48.4
Q ss_pred HHhcCCchhHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhHHcCCCCCcccHHHHHHHhhcCCChhhHHHH
Q 045069 48 YALNNVLPSARILFDKTPQRSVFLWNSIIRAYALAHRFNDAKSLFKNLLRTQLKPDNFTYACITRACSENSDLPGLRFV 126 (554)
Q Consensus 48 ~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 126 (554)
|.+.+++++++.+.++ -..|.-.|...+..++.+-|.++++...+.| +...|.+.+-.|-..=+++-+.++
T Consensus 16 ykkN~rw~qSI~L~Kk-----DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 16 PRGSHMWKQSVELAKK-----DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp SSSCCCCSSCCCCCSC-----CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred hhccccHHHHHHHHHh-----cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3445556555544333 2246667777788899999999999988876 667787877777766666665543
No 367
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.69 E-value=2.2e+02 Score=23.76 Aligned_cols=57 Identities=7% Similarity=-0.115 Sum_probs=34.7
Q ss_pred HHHHHHhcCChHHHHHHHHHhHHcCCCCCc-------ccHHHHHHHhhcC---CChhhHHHHHHHHHH
Q 045069 75 IIRAYALAHRFNDAKSLFKNLLRTQLKPDN-------FTYACITRACSEN---SDLPGLRFVHGGAIV 132 (554)
Q Consensus 75 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~~~~~~~ 132 (554)
.+...++.|+.+....+++.+.+.|..++. .-.+.| ...+.. |+.+-++.+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L-~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCL-MKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHH-HHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHH-HHHHHccccchHHHHHHHHhcCCc
Confidence 344556778888877788877777766554 223333 333344 777777766655443
No 368
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.35 E-value=1.2e+02 Score=28.67 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHccCChhHHHHHHHHHhhc
Q 045069 510 AYKVMLSNTYAEDGRWDDVMKLRDDIVDN 538 (554)
Q Consensus 510 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 538 (554)
.+.+.+|..+...+++.+|.+.+..+.+.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 45566666777777777777777666554
No 369
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.10 E-value=3.9e+02 Score=23.75 Aligned_cols=81 Identities=10% Similarity=0.048 Sum_probs=37.2
Q ss_pred HHHHHhcCChHHHHHHHHHhHHcCCCCCcccH--HHHHHHhhcCCChhhHHHHHHHHHHhcCCCCHhHHHHHHHHHHcCC
Q 045069 76 IRAYALAHRFNDAKSLFKNLLRTQLKPDNFTY--ACITRACSENSDLPGLRFVHGGAIVSGLGRDSITSSALVTAYSKLS 153 (554)
Q Consensus 76 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 153 (554)
+...+..|+.+-+..+ .+.|..++.... .+.+...+..|+.+-+. .+.+.|..++...-...+...+..|
T Consensus 24 L~~Aa~~g~~~~v~~L----l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 24 IHVAARKGQTDEVRRL----IETGVSPTIQNRFGCTALHLACKFGCVDTAK----YLASVGEVHSLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHTCHHHHHHH----HHTTCCTTCCCTTCCCHHHHHHHHCCHHHHH----HHHHHCCCCCCBTTBCHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHH----HHcCCCccccCCCCCcHHHHHHHcCCHHHHH----HHHHCCCCccccCCCCHHHHHHHcC
Confidence 3344455665544443 344555444321 22344444556654443 3344454433321222333344566
Q ss_pred CHhHHHHhhcc
Q 045069 154 LIDEAIKVFDG 164 (554)
Q Consensus 154 ~~~~A~~~~~~ 164 (554)
+.+-+..+++.
T Consensus 96 ~~~~v~~Ll~~ 106 (364)
T 3ljn_A 96 KTDLVVALVEG 106 (364)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 66666666554
Done!