Citrus Sinensis ID: 045070

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-
MEEEDESLEKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQAIKLMEELKLKPQLLSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPNDKVFISLEPGMYSCCSWPRESQYVDQNGKPSFSLLSALRLWMTPVNQRRSVGHLAYSGHQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKIQDIYTAMELKKVLSDFGGEVCTFLENYD
ccccHHcHHHHHHHHHHcccccccccccccccccccccEEEEEccccccEEEEEccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccEEEEEEccccccccEEEcccccccHHHHHHHcccccccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccEEEEcccccccEEEEEcccccccEEEEcccHcEEcHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHccccccccEEccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccEEEEHHHHHccccccccccccccccccccccccccccccccccHHccccccccccEEEEcEEcccccEEEEEEEcccccccEEEEEEccccHHHHHHHcccccccccccEEEEEEEEccccccccHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MEEEDESLEKLLKWAAEMgitdstiqnhsrsrnclghsltvshfpeaggrgLAAARDLtkgelilrvpktalfttecllksdQKLSLAVnrhlflspsQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILAtfgpfekqaLQVDDAIWAAEKAVSKAESEWKQAIKLMEELKLKPQLLSFKAWLWASATVssrtmhiswdeagclcpvgdlfnyaapgegeesnigiedvegwmpapclpkgdttdvldsekfNAHLhrltdgrfeedVNSYCFyarnnykrGEQVLLSYGTYTNLELLEHYGFllnenpndkvfislepgmysccswpresqyvdqngkpSFSLLSALRLWmtpvnqrrsvghlaysghqlsvdNEISVMKWLSNNclgmlnslptskeEDALLLCAIDKIQDIYTAMELKKVLSDfggevctflenyd
MEEEDESLEKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQAIKLMEELKLKPQLLSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPKGDTTDVLDSEKFNAHlhrltdgrfeedVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPNDKVFISLEPGMYSCCSWPRESQYVDQNGKPSFSLLSALRLWMTPVNQRRSVGHLAYSGHQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKIQDIYTAMELKKVLSDFGGEVCTFLENYD
MeeedeslekllkWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEaggrglaaarDLTKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIwaaekavskaesewkQAIKLMEELKLKPQLLSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPNDKVFISLEPGMYSCCSWPRESQYVDQNGKPSFSLLSALRLWMTPVNQRRSVGHLAYSGHQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKIQDIYTAMELKKVLSDFGGEVCTFLENYD
***********LKWAAEMGIT***********NCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQAIKLMEELKLKPQLLSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPNDKVFISLEPGMYSCCSWPRESQYVDQNGKPSFSLLSALRLWMTPVNQRRSVGHLAYSGHQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKIQDIYTAMELKKVLSDFGGEVCTFLE***
****DES*EKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQAIKLMEELKLKPQLLSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPNDKVFISLEPGMYSCCSWPRESQYVDQNGKPSFSLLSALRLWMTPVNQRRS********HQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLC***********M**KKVLSDFGGEVCTFLE***
********EKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIWAAE*********WKQAIKLMEELKLKPQLLSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPNDKVFISLEPGMYSCCSWPRESQYVDQNGKPSFSLLSALRLWMTPVNQRRSVGHLAYSGHQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKIQDIYTAMELKKVLSDFGGEVCTFLENYD
*****ESLEKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQAIKLMEELKLKPQLLSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPG*************************TTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPNDKVFISLEPGMYSCCSWPRESQYVDQNGKPSFSLLSALRLWMTPVNQRRSVGHLAYSGHQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKIQDIYTAMELKKVLSDFGGEVCTFLEN**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEEDESLEKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAxxxxxxxxxxxxxxxxxxxxxPQLLSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPNDKVFISLEPGMYSCCSWPRESQYVDQNGKPSFSLLSALRLWMTPVNQRRSVGHLAYSGHQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKIQDIYTAMELKKVLSDFGGEVCTFLENYD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query441 2.2.26 [Sep-21-2011]
Q6NQJ8491 Protein SET DOMAIN GROUP yes no 0.956 0.859 0.578 1e-139
Q9NVD3440 SET domain-containing pro yes no 0.557 0.559 0.235 2e-12
B7ZUF3582 Histone-lysine N-methyltr yes no 0.761 0.577 0.246 1e-10
B2KI88 594 Histone-lysine N-methyltr N/A no 0.766 0.569 0.244 1e-10
Q5ZML9 593 Histone-lysine N-methyltr yes no 0.811 0.603 0.231 2e-10
E2RBS6 588 Histone-lysine N-methyltr no no 0.766 0.574 0.239 4e-10
P58467439 SET domain-containing pro yes no 0.537 0.539 0.249 5e-10
B5FW36 595 Histone-lysine N-methyltr N/A no 0.766 0.568 0.239 5e-10
Q91WC0 594 Histone-lysine N-methyltr no no 0.775 0.575 0.232 5e-10
B1MTJ4 595 Histone-lysine N-methyltr N/A no 0.775 0.574 0.239 8e-10
>sp|Q6NQJ8|SDG40_ARATH Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40 PE=2 SV=1 Back     alignment and function desciption
 Score =  494 bits (1271), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/441 (57%), Positives = 317/441 (71%), Gaps = 19/441 (4%)

Query: 1   MEEEDESLEKLLKWAAEMGITDSTIQNHSRSRN-CLGHSLTVSHFPEAGGRGLAAARDLT 59
           M+ E +++E  L+WAAE+GI+DS   + SR R+ CLGHSL+VS FP+AGGRGL AAR+L 
Sbjct: 1   MDLEHQTMETFLRWAAEIGISDSI--DSSRFRDSCLGHSLSVSDFPDAGGRGLGAARELK 58

Query: 60  KGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYT 119
           KGEL+L+VP+ AL TTE ++  D KLS AVN H  LS +QIL VCLLYE+ K K S+WY 
Sbjct: 59  KGELVLKVPRKALMTTESIIAKDLKLSDAVNLHNSLSSTQILSVCLLYEMSKEKKSFWYP 118

Query: 120 YLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQAIKLMEELKLKPQLL 179
           YL  +PR Y++LATFG FEKQALQV+DA+WA EKA +K +SEWK+A  LM+EL+LKP+  
Sbjct: 119 YLFHIPRDYDLLATFGNFEKQALQVEDAVWATEKATAKCQSEWKEAGSLMKELELKPKFR 178

Query: 180 SFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPC 239
           SF+AWLWASAT+SSRT+H+ WD AGCLCPVGDLFNY APG+   +  G E       A  
Sbjct: 179 SFQAWLWASATISSRTLHVPWDSAGCLCPVGDLFNYDAPGDYSNTPQGPESANNVEEAGL 238

Query: 240 LPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLEL 299
           +                H  RLTDG FEEDVN+YC YAR NY+ GEQVLL YGTYTNLEL
Sbjct: 239 V-------------VETHSERLTDGGFEEDVNAYCLYARRNYQLGEQVLLCYGTYTNLEL 285

Query: 300 LEHYGFLLNENPNDKVFISLEPGMYS-CCSWPRESQYVDQNGKPSFSLLSALRLWMTPVN 358
           LEHYGF+L EN NDKVFI LE  ++S   SWP++S Y+ Q+GK SF+L+S LRLW+ P +
Sbjct: 286 LEHYGFMLEENSNDKVFIPLETSLFSLASSWPKDSLYIHQDGKLSFALISTLRLWLIPQS 345

Query: 359 QR-RSVGHLAYSGHQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKIQDIY 417
           QR +SV  L Y+G Q+SV NEI VMKW+S  C  +L  LPTS  ED +LL  IDK+QD  
Sbjct: 346 QRDKSVMRLVYAGSQISVKNEILVMKWMSEKCGSVLRDLPTSVTEDTVLLHNIDKLQDPE 405

Query: 418 TAMELKKVLSDFGGEVCTFLE 438
             +E K+  + FG EV  FL+
Sbjct: 406 LRLEQKETEA-FGSEVRAFLD 425

Arabidopsis thaliana (taxid: 3702)
>sp|Q9NVD3|SETD4_HUMAN SET domain-containing protein 4 OS=Homo sapiens GN=SETD4 PE=2 SV=1 Back     alignment and function description
>sp|B7ZUF3|SETD3_XENTR Histone-lysine N-methyltransferase setd3 OS=Xenopus tropicalis GN=setd3 PE=2 SV=1 Back     alignment and function description
>sp|B2KI88|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|Q5ZML9|SETD3_CHICK Histone-lysine N-methyltransferase setd3 OS=Gallus gallus GN=SETD3 PE=2 SV=1 Back     alignment and function description
>sp|E2RBS6|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|P58467|SETD4_MOUSE SET domain-containing protein 4 OS=Mus musculus GN=Setd4 PE=2 SV=1 Back     alignment and function description
>sp|B5FW36|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1 Back     alignment and function description
>sp|Q91WC0|SETD3_MOUSE Histone-lysine N-methyltransferase setd3 OS=Mus musculus GN=Setd3 PE=1 SV=1 Back     alignment and function description
>sp|B1MTJ4|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
255584095510 Protein SET DOMAIN GROUP, putative [Rici 0.988 0.854 0.633 1e-156
359476494504 PREDICTED: protein SET DOMAIN GROUP 40-l 0.975 0.853 0.629 1e-154
224077384518 SET domain protein [Populus trichocarpa] 0.938 0.799 0.616 1e-147
297738159449 unnamed protein product [Vitis vinifera] 0.859 0.844 0.642 1e-144
357491725532 Protein SET DOMAIN GROUP [Medicago trunc 0.979 0.812 0.563 1e-142
449456212483 PREDICTED: protein SET DOMAIN GROUP 40-l 0.970 0.886 0.599 1e-141
255637489497 unknown [Glycine max] 0.988 0.877 0.601 1e-140
356553227475 PREDICTED: protein SET DOMAIN GROUP 40-l 0.950 0.882 0.601 1e-139
42567909491 protein SET DOMAIN GROUP 40 [Arabidopsis 0.956 0.859 0.578 1e-137
297807745493 SET domain-containing protein [Arabidops 0.954 0.853 0.575 1e-136
>gi|255584095|ref|XP_002532790.1| Protein SET DOMAIN GROUP, putative [Ricinus communis] gi|223527460|gb|EEF29592.1| Protein SET DOMAIN GROUP, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  557 bits (1435), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 284/448 (63%), Positives = 337/448 (75%), Gaps = 12/448 (2%)

Query: 2   EEEDESLEKLLKWAA-EMGITDSTIQNHS--RSRNCLGHSLTVSHFPEAGGRGLAAARDL 58
           + E E LE  LKWAA E+GI+DS+  + S     +CLG SLTVSHFP+AGGRGL AARDL
Sbjct: 4   QAEHERLEGFLKWAAAELGISDSSNSSQSLEEPNSCLGISLTVSHFPDAGGRGLGAARDL 63

Query: 59  TKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWY 118
            KGEL+LRVPK+AL T +  LK    LS A+N H  LSP+Q L VCLLYE+ KG+SS+WY
Sbjct: 64  KKGELVLRVPKSALLTKDSFLKDGLLLS-AINNHSALSPTQTLTVCLLYEMSKGQSSFWY 122

Query: 119 TYLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQAIKLMEELKLKPQL 178
            YLM LPR YEILATF  FEKQALQVDDAIW AEKA+SKAE + K+A  LM+EL+LKPQ 
Sbjct: 123 PYLMHLPRSYEILATFSEFEKQALQVDDAIWTAEKAISKAELDRKEAYSLMQELRLKPQF 182

Query: 179 LSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAP 238
           L+ +AW+WA AT+SSRTMHI WDEAGCLCPVGD FNYAAPGE   S    E+ E W PA 
Sbjct: 183 LTLRAWIWACATISSRTMHIPWDEAGCLCPVGDFFNYAAPGEESSSP---ENDESWKPAS 239

Query: 239 CLPKGD-----TTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGT 293
           CL         +T    SE F+  L  LTDG F+ED  +YCFYAR NYK+G QVLLSYGT
Sbjct: 240 CLEDASLSSERSTSNFCSETFDVQLKSLTDGGFDEDKAAYCFYARQNYKKGAQVLLSYGT 299

Query: 294 YTNLELLEHYGFLLNENPNDKVFISLEPGMYSCCSWPRESQYVDQNGKPSFSLLSALRLW 353
           YTNLELLEHYGFLLNENPNDKVFI LE  M S  +WP+ES Y+ Q+GKPSFSLL ALRLW
Sbjct: 300 YTNLELLEHYGFLLNENPNDKVFIPLELSMQSSNTWPKESMYIHQDGKPSFSLLCALRLW 359

Query: 354 MTPVNQRRSVGHLAYSGHQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKI 413
            TP N+RRS+GHLAYSG QLSV+NE+S++KW+S  C  +L  LPT+ EED+LLL AIDKI
Sbjct: 360 ATPSNRRRSMGHLAYSGSQLSVENEVSILKWISRKCHAVLKKLPTTVEEDSLLLSAIDKI 419

Query: 414 QDIYTAMELKKVLSDFGGEVCTFLENYD 441
           Q+ ++ +EL K+L  F G+   F+E ++
Sbjct: 420 QNCHSPLELGKMLHGFEGQASAFVEAHN 447

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359476494|ref|XP_002269094.2| PREDICTED: protein SET DOMAIN GROUP 40-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224077384|ref|XP_002305239.1| SET domain protein [Populus trichocarpa] gi|222848203|gb|EEE85750.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738159|emb|CBI27360.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357491725|ref|XP_003616150.1| Protein SET DOMAIN GROUP [Medicago truncatula] gi|355517485|gb|AES99108.1| Protein SET DOMAIN GROUP [Medicago truncatula] Back     alignment and taxonomy information
>gi|449456212|ref|XP_004145844.1| PREDICTED: protein SET DOMAIN GROUP 40-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255637489|gb|ACU19071.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356553227|ref|XP_003544959.1| PREDICTED: protein SET DOMAIN GROUP 40-like [Glycine max] Back     alignment and taxonomy information
>gi|42567909|ref|NP_197226.2| protein SET DOMAIN GROUP 40 [Arabidopsis thaliana] gi|75271674|sp|Q6NQJ8.1|SDG40_ARATH RecName: Full=Protein SET DOMAIN GROUP 40 gi|34222078|gb|AAQ62875.1| At5g17240 [Arabidopsis thaliana] gi|51969984|dbj|BAD43684.1| unknown protein [Arabidopsis thaliana] gi|332005020|gb|AED92403.1| protein SET DOMAIN GROUP 40 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807745|ref|XP_002871756.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317593|gb|EFH48015.1| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query441
TAIR|locus:2167235491 SDG40 "AT5G17240" [Arabidopsis 0.929 0.835 0.540 1.5e-113
UNIPROTKB|B2KI88 594 SETD3 "Histone-lysine N-methyl 0.215 0.159 0.295 9.5e-08
UNIPROTKB|F1SAQ4 595 SETD3 "Uncharacterized protein 0.215 0.159 0.306 7.2e-07
UNIPROTKB|E2RBS6 588 SETD3 "Histone-lysine N-methyl 0.215 0.161 0.306 7.2e-07
UNIPROTKB|G3V6U9 596 Setd3 "Protein Setd3" [Rattus 0.215 0.159 0.285 8.1e-07
ZFIN|ZDB-GENE-030131-9137 597 setd3 "SET domain containing 3 0.131 0.097 0.406 1.6e-06
UNIPROTKB|B7ZUF3 582 setd3 "Histone-lysine N-methyl 0.215 0.163 0.306 2.6e-06
TAIR|locus:2145663514 AT5G14260 "AT5G14260" [Arabido 0.276 0.237 0.301 3.6e-06
ZFIN|ZDB-GENE-050808-2440 setd4 "SET domain containing 4 0.285 0.286 0.275 4.9e-06
UNIPROTKB|F6R2J7 594 SETD3 "Uncharacterized protein 0.215 0.159 0.295 5.7e-06
TAIR|locus:2167235 SDG40 "AT5G17240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 231/427 (54%), Positives = 288/427 (67%)

Query:    14 WAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEXXXXXXXXXXDLTKGELILRVPKTALF 73
             WAAE+GI+DS   +  R  +CLGHSL+VS FP+          +L KGEL+L+VP+ AL 
Sbjct:    14 WAAEIGISDSIDSSRFRD-SCLGHSLSVSDFPDAGGRGLGAARELKKGELVLKVPRKALM 72

Query:    74 TTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILAT 133
             TTE ++  D KLS AVN H  LS +QIL VCLLYE+ K K S+WY YL  +PR Y++LAT
Sbjct:    73 TTESIIAKDLKLSDAVNLHNSLSSTQILSVCLLYEMSKEKKSFWYPYLFHIPRDYDLLAT 132

Query:   134 FGPFEKQALQVDDAIXXXXXXXXXXXXXXXQAIKLMEELKLKPQLLSFKAWLWASATVSS 193
             FG FEKQALQV+DA+               +A  LM+EL+LKP+  SF+AWLWASAT+SS
Sbjct:   133 FGNFEKQALQVEDAVWATEKATAKCQSEWKEAGSLMKELELKPKFRSFQAWLWASATISS 192

Query:   194 RTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPKGDTTDVLDSEK 253
             RT+H+ WD AGCLCPVGDLFNY APG+   +  G E       A          V+++  
Sbjct:   193 RTLHVPWDSAGCLCPVGDLFNYDAPGDYSNTPQGPESANNVEEAGL--------VVET-- 242

Query:   254 FNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPND 313
                H  RLTDG FEEDVN+YC YAR NY+ GEQVLL YGTYTNLELLEHYGF+L EN ND
Sbjct:   243 ---HSERLTDGGFEEDVNAYCLYARRNYQLGEQVLLCYGTYTNLELLEHYGFMLEENSND 299

Query:   314 KVFISLEPGMYSCCS-WPRESQYVDQNGKPSFSLLSALRLWMTPVNQR-RSVGHLAYSGH 371
             KVFI LE  ++S  S WP++S Y+ Q+GK SF+L+S LRLW+ P +QR +SV  L Y+G 
Sbjct:   300 KVFIPLETSLFSLASSWPKDSLYIHQDGKLSFALISTLRLWLIPQSQRDKSVMRLVYAGS 359

Query:   372 QLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDKIQDIYTAMELKKVLSDFGG 431
             Q+SV NEI VMKW+S  C  +L  LPTS  ED +LL  IDK+QD    +E K+  + FG 
Sbjct:   360 QISVKNEILVMKWMSEKCGSVLRDLPTSVTEDTVLLHNIDKLQDPELRLEQKETEA-FGS 418

Query:   432 EVCTFLE 438
             EV  FL+
Sbjct:   419 EVRAFLD 425
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
UNIPROTKB|B2KI88 SETD3 "Histone-lysine N-methyltransferase setd3" [Rhinolophus ferrumequinum (taxid:59479)] Back     alignment and assigned GO terms
UNIPROTKB|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBS6 SETD3 "Histone-lysine N-methyltransferase setd3" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3V6U9 Setd3 "Protein Setd3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9137 setd3 "SET domain containing 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZUF3 setd3 "Histone-lysine N-methyltransferase setd3" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
TAIR|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050808-2 setd4 "SET domain containing 4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6NQJ8SDG40_ARATHNo assigned EC number0.57820.95690.8594yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 441
KOG1337472 consensus N-methyltransferase [General function pr 100.0
KOG1338466 consensus Uncharacterized conserved protein [Funct 99.97
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.62
PF09273128 Rubis-subs-bind: Rubisco LSMT substrate-binding; I 99.43
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 98.44
KOG2589453 consensus Histone tail methylase [Chromatin struct 90.74
KOG1085392 consensus Predicted methyltransferase (contains a 85.24
>KOG1337 consensus N-methyltransferase [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=8.8e-32  Score=279.95  Aligned_cols=386  Identities=21%  Similarity=0.232  Sum_probs=260.7

Q ss_pred             HHHHHHHHHHHHHcCCccCcccccccc-------------ccccCCceeEEecCCCCcceEEEcccCCCCCeEEeccCcc
Q 045070            5 DESLEKLLKWAAEMGITDSTIQNHSRS-------------RNCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTA   71 (441)
Q Consensus         5 ~~~~~~l~~W~~~~G~~~~~~~~~~~~-------------~~~~~~~l~i~~~~~~~GrGl~A~~~I~~g~~ll~IP~~~   71 (441)
                      .+++.+|++|...+|+..+++. .+|.             .-+..++++...+.. .+.|+.+...+..|..+...|...
T Consensus         3 ~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~   80 (472)
T KOG1337|consen    3 VDVLSALLRWAQCNGISLSSSL-DLRPDELKGLVRWAASESIASSENIKSLKFWL-TGNGLSSSKSSLPGNDIDEWPLLV   80 (472)
T ss_pred             hhHHHHhhhHHhccCccCCccc-ccCccccCcceeeeecccCCCccccccceecc-ccCCcchhhhccccccccccchhh
Confidence            4678899999999998875321 1111             001111122222222 255555555555555555555554


Q ss_pred             cccccccccc--chHHHHHHhh-cCCCChh-HHHHHHHHHHhhCCCCCCchHHhhhcCCCCCcCcCCChhHHhhcCCchH
Q 045070           72 LFTTECLLKS--DQKLSLAVNR-HLFLSPS-QILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDA  147 (441)
Q Consensus        72 ~ls~~~~~~~--~~~l~~~l~~-~~~l~~~-~~Lal~Ll~e~~~~~~S~w~pYl~~LP~~~~~pl~w~~~el~~L~~~~~  147 (441)
                      .++.......  -+........ .+..+.. ..|+++++.++..+..|.|.+|+..||+.+++|++|...++..|++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~~l~~~~~  160 (472)
T KOG1337|consen   81 SIRLIKGEKLLLVPPLLLLIAKRKPYNDLLPIALALFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVKSLLSTPL  160 (472)
T ss_pred             hhhhhhhhhhccCCchhhhccccccCccccHHHHHHHHHHhhhccccccchhhhhhchhhcCCccccCHHHHHHhhcchh
Confidence            4444222100  0011111111 1223333 7899999999987777999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCcccCHHHHHHHHHHHhhcceeeCCC---------CCcccCCccccc
Q 045070          148 IWAAEKAVSKAESEWKQAIKLMEELK-----LKPQLLSFKAWLWASATVSSRTMHISWD---------EAGCLCPVGDLF  213 (441)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~t~e~f~WA~~~v~SRa~~~~~~---------~~~~LvP~~Dm~  213 (441)
                      ...+..+.+.++..|..+..++....     ...+.+++++|.||+++|+||+|+.+..         +...|+|++||+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~  240 (472)
T KOG1337|consen  161 FEIVASRRQNLVNKSAELLEVLQSHPSLFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLL  240 (472)
T ss_pred             hHHHHHHHHHhhhhHHHHHHHHHhccccccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhh
Confidence            99888888777776666666554421     1123489999999999999999998654         246899999999


Q ss_pred             ccCCCCCCCCCCCCcccccCCCCCCCCCCCCCCccccchhhhccccccCCCCcccCCceEEEEEecccCCCceEEeccCC
Q 045070          214 NYAAPGEGEESNIGIEDVEGWMPAPCLPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGT  293 (441)
Q Consensus       214 NH~~~~~~~~~~~~~~~~~~~~p~~d~~n~~~~~~~~~~~f~~~~~~~~~g~~~~~~~~~~l~a~~~i~~Geev~isYG~  293 (441)
                      ||++...                                          .++|+..++.+.+++.++|++|+||||+||+
T Consensus       241 NH~~~~~------------------------------------------~~~~~~~d~~~~l~~~~~v~~geevfi~YG~  278 (472)
T KOG1337|consen  241 NHSPEVI------------------------------------------KAGYNQEDEAVELVAERDVSAGEEVFINYGP  278 (472)
T ss_pred             ccCchhc------------------------------------------cccccCCCCcEEEEEeeeecCCCeEEEecCC
Confidence            9986421                                          0124445568999999999999999999999


Q ss_pred             CCcHHHHHhcCcccCCCCCCeEEeccCCCCcc-----------CCCCCCccee-ecCCCCCCHHHHHHHHHhcCCchhh-
Q 045070          294 YTNLELLEHYGFLLNENPNDKVFISLEPGMYS-----------CCSWPRESQY-VDQNGKPSFSLLSALRLWMTPVNQR-  360 (441)
Q Consensus       294 ~sN~~LL~~YGFv~~~Np~D~v~l~~~~~l~~-----------~~~~~~~~~~-~~~~g~~~~~LL~~lRv~~~~~~e~-  360 (441)
                      ++|.+||++||||.++||+|.|.+.+.+....           ....+....+ +...+.+....+...+++.+..... 
T Consensus       279 ~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (472)
T KOG1337|consen  279 KSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEPVSEMLLLFLLLDALSERLE  358 (472)
T ss_pred             CchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCchhhhhhhhhhhccccccch
Confidence            99999999999999999999999988875321           1122222222 3333444444444444334333222 


Q ss_pred             ----hhh---c---cccccCCccChhhHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHhhhccc----ccHHHHHHHHHH
Q 045070          361 ----RSV---G---HLAYSGHQLSVDNEISVMKWLSNN-CLGMLNSLPTSKEEDALLLCAIDKI----QDIYTAMELKKV  425 (441)
Q Consensus       361 ----~~~---~---~~~~~~~~ls~~nE~~~~~~L~~~-~~~~L~~~~ttleeD~~~L~~~~~~----~~~~~~~~~k~~  425 (441)
                          ...   .   .....+.+++.++|...+..+... |...+..+.+++++|+.++......    ....++..+|||
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~~~~l~~~~~~~~k~~~~~~~i  438 (472)
T KOG1337|consen  359 SELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLKDNILSKLLELLEKLRTLEKRI  438 (472)
T ss_pred             hhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhcccccchhhhhhhhhhhhHHHH
Confidence                111   1   111345678889999999999999 9999999999999999999966432    336667777788


Q ss_pred             Hhhcchhhh
Q 045070          426 LSDFGGEVC  434 (441)
Q Consensus       426 ~~~~~~~~~  434 (441)
                      |.++-+.++
T Consensus       439 L~~~~~~~~  447 (472)
T KOG1337|consen  439 LEKSLKLLR  447 (472)
T ss_pred             HHHHHHHHH
Confidence            877777665

>KOG1338 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
3smt_A497 Crystal Structure Of Human Set Domain-Containing Pr 8e-07
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 145/384 (37%), Gaps = 77/384 (20%)
Query: 57  DLTKGELILRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSW 116
           D+   EL L VP+  L T E    S      + +R L    +  L   LL E     +S+
Sbjct: 112 DIKAEELFLWVPRKLLXTVESAKNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSF 170
Query: 117 WYTYLMLLPRCYEILATFGPFEKQALQVDDAIXXXXXXXXXXXXXXXQAIKLME------ 170
           W  Y+  LP  Y+    F   E + LQ   AI                  K+++      
Sbjct: 171 WQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHAN 230
Query: 171 ELKLKPQLLSFKAWLWASATVSSRTMHISWDEAG----CLCPVGDLFNYAAPGEGEESNI 226
           +L LK    +++ + WA ++V +R   I  ++       L P+ D  N+           
Sbjct: 231 KLPLKDSF-TYEDYRWAVSSVXTRQNQIPTEDGSRVTLALIPLWDXCNH----------- 278
Query: 227 GIEDVEGWMPAPCLPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQ 286
                              T+ L +  +N     L D R E      C  A  +++ GEQ
Sbjct: 279 -------------------TNGLITTGYN-----LEDDRCE------CV-ALQDFRAGEQ 307
Query: 287 VLLSYGTYTNLELLEHYGFLLNENPNDKVFISL-----------EPGMYSCCSWPRESQY 335
           + + YGT +N E + H GF  + N +D+V I L           +  + +    P  S +
Sbjct: 308 IYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAXKAEVLARAGIPTSSVF 367
Query: 336 VDQNGKPSFS--LLSALRLWMTPVNQRRS----------VGHLAYSGHQLSVDNEISVMK 383
                +P  S  LL+ LR++     + +           +  L  S   +S DNE+ +  
Sbjct: 368 ALHFTEPPISAQLLAFLRVFCXTEEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWT 427
Query: 384 WLSNNCLGMLNSLPTSKEEDALLL 407
           +L +    +L +  T+ EED  +L
Sbjct: 428 FLEDRASLLLKTYKTTIEEDKSVL 451

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query441
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 3e-50
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 3e-46
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 1e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440 Back     alignment and structure
 Score =  175 bits (445), Expect = 3e-50
 Identities = 76/424 (17%), Positives = 133/424 (31%), Gaps = 73/424 (17%)

Query: 5   DESLEKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELI 64
             +++   KW  E G+                    V       G GL A +D+++ ++I
Sbjct: 3   SPAVQTFWKWLQEEGVI--------------TAKTPVKASVVTEGLGLVALKDISRNDVI 48

Query: 65  LRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLL 124
           L+VPK      + +  S+     +      L P   +I+ L+ E  +  S W + Y  +L
Sbjct: 49  LQVPKRLWINPDAVAASEIGRVCSE-----LKPWLSVILFLIRERSREDSVWKH-YFGIL 102

Query: 125 PRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQAIK--LMEELKLKPQLLSFK 182
           P+  +    +   E Q LQ    +          ++E  +  +  ++   +L P  ++  
Sbjct: 103 PQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLD 162

Query: 183 AWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPK 242
            + WA   + SR      +E   + P+ DL N++A                         
Sbjct: 163 DFFWAFGILRSRAFSRLRNENLVVVPMADLINHSA------------------------- 197

Query: 243 GDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGT-YTNLELLE 301
                       +                 +   +  + K GEQV + Y    +N EL  
Sbjct: 198 -------GVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELAL 250

Query: 302 HYGFLLNENPNDKVFISLEPG------------MYSCCSWPRESQYVDQNGKPSFSLLSA 349
            YGF+          ++LE                S          +  N      LL  
Sbjct: 251 DYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPPGLLPY 310

Query: 350 LRLWMTPVNQRRSVGHLAYSGHQ------LSVDNEISVMKWLSNNCLGMLNSLPTSKEED 403
           LRL          +  L            +S DNE  + K +   C   L    T+ E+D
Sbjct: 311 LRLVALGGTDAFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQD 370

Query: 404 ALLL 407
             L 
Sbjct: 371 RELK 374
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497 Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 100.0
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 100.0
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 100.0
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 99.3
3qww_A433 SET and MYND domain-containing protein 2; methyltr 99.28
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 99.21
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 98.43
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 96.21
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 96.02
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 95.5
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 94.48
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 94.32
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 94.17
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 94.15
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 93.77
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 93.54
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 93.54
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 93.34
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 93.28
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 93.17
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 92.07
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 91.92
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 91.77
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 86.35
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 84.77
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 83.34
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 82.26
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 82.11
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=4.2e-64  Score=522.45  Aligned_cols=375  Identities=25%  Similarity=0.339  Sum_probs=304.6

Q ss_pred             HHHHHHHHHHHHHcCCccCccccccccccccCCceeEEecCCCCcceEEEcccCCCCCeEEeccCccccccccccccchH
Q 045070            5 DESLEKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTALFTTECLLKSDQK   84 (441)
Q Consensus         5 ~~~~~~l~~W~~~~G~~~~~~~~~~~~~~~~~~~l~i~~~~~~~GrGl~A~~~I~~g~~ll~IP~~~~ls~~~~~~~~~~   84 (441)
                      .+.+.+|++|++++|+.++              +|+++.+++ .||||+|+++|++|++|++||.+++||.+++..+  .
T Consensus        75 ~~~~~~ll~W~~~~G~~~~--------------~v~i~~~~~-~GrGl~A~~dI~~ge~ll~IP~~lllt~~~a~~s--~  137 (497)
T 3smt_A           75 EDYFPDLMKWASENGASVE--------------GFEMVNFKE-EGFGLRATRDIKAEELFLWVPRKLLMTVESAKNS--V  137 (497)
T ss_dssp             GGGHHHHHHHHHHTTCCCT--------------TEEEEEETT-TEEEEEESSCBCTTCEEEEEEGGGCEEHHHHHTS--T
T ss_pred             HHHHHHHHHHHHHCCCCcc--------------ceEEEEcCC-CccEEEEcccCCCCCEEEEcCHHHhCcHHhhhhh--h
Confidence            4678999999999999884              799999987 4999999999999999999999999999987532  2


Q ss_pred             HHHHHhhcC--CCChhHHHHHHHHHHhhCCCCCCchHHhhhcCCCCCcCcCCChhHHhhcCCchHHHHHHHHHHHHHHHH
Q 045070           85 LSLAVNRHL--FLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEW  162 (441)
Q Consensus        85 l~~~l~~~~--~l~~~~~Lal~Ll~e~~~~~~S~w~pYl~~LP~~~~~pl~w~~~el~~L~~~~~~~~~~~~~~~~~~~~  162 (441)
                      +++++....  ...++..|+++|++|+. ++.|+|+|||++||+.+++|++|+++|++.|+|+++...+.++.+.+.++|
T Consensus       138 l~~~~~~~~~l~~~~~~~Lal~Ll~E~~-~~~S~w~pYl~~LP~~~~~pl~w~~eel~~L~gt~l~~~v~~~~~~~~~~~  216 (497)
T 3smt_A          138 LGPLYSQDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTLPSEYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY  216 (497)
T ss_dssp             THHHHHHCHHHHHCHHHHHHHHHHHHHT-CTTCTTHHHHTTSCSCCCSGGGCCHHHHHTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccHHHHHHHHHHHhc-CCCCchHHHHHhCCCCCCCCCcCCHHHHhhccCCcHHHHHHHHHHHHHHHH
Confidence            344443211  11346689999999996 899999999999999999999999999999999999988888888888899


Q ss_pred             HHHHHHHHhc----CCC-CcccCHHHHHHHHHHHhhcceeeCCCC----CcccCCcccccccCCCCCCCCCCCCcccccC
Q 045070          163 KQAIKLMEEL----KLK-PQLLSFKAWLWASATVSSRTMHISWDE----AGCLCPVGDLFNYAAPGEGEESNIGIEDVEG  233 (441)
Q Consensus       163 ~~~~~~l~~~----~~~-~~~~t~e~f~WA~~~v~SRa~~~~~~~----~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~  233 (441)
                      ..+.+++...    .++ .+.+|+++|+||+++|+||+|.++..+    ..+|||++||+||++...             
T Consensus       217 ~~~~~~~~~~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~-------------  283 (497)
T 3smt_A          217 AYFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLI-------------  283 (497)
T ss_dssp             HHHHHHC----CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSE-------------
T ss_pred             HHHHHHHHhCcccccCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCccc-------------
Confidence            8877776542    122 356899999999999999999997653    368999999999986421             


Q ss_pred             CCCCCCCCCCCCCccccchhhhccccccCCCCcccCCceEEEEEecccCCCceEEeccCCCCcHHHHHhcCcccCCCCCC
Q 045070          234 WMPAPCLPKGDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGTYTNLELLEHYGFLLNENPND  313 (441)
Q Consensus       234 ~~p~~d~~n~~~~~~~~~~~f~~~~~~~~~g~~~~~~~~~~l~a~~~i~~Geev~isYG~~sN~~LL~~YGFv~~~Np~D  313 (441)
                                  ++                 .|+.+.+.+.+++.++|++|||||||||+++|++||++|||++++||+|
T Consensus       284 ------------~~-----------------~~~~~~~~~~~~a~~~i~~Geei~isYG~~~n~~Ll~~YGFv~~~Np~D  334 (497)
T 3smt_A          284 ------------TT-----------------GYNLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHD  334 (497)
T ss_dssp             ------------EE-----------------EEETTTTEEEEEESSCBCTTCEEEECCCSCCHHHHHHHHSCCCTTCTTC
T ss_pred             ------------ce-----------------eeeccCCeEEEEeCCccCCCCEEEEeCCCCChHHHHHHCCCCCCCCCCc
Confidence                        10                 1233456789999999999999999999999999999999999999999


Q ss_pred             eEEeccCCCCcc-----------CCCCCCcceeec-CC-CCCCHHHHHHHHHhcCCchhhhhhcc-------c---cccC
Q 045070          314 KVFISLEPGMYS-----------CCSWPRESQYVD-QN-GKPSFSLLSALRLWMTPVNQRRSVGH-------L---AYSG  370 (441)
Q Consensus       314 ~v~l~~~~~l~~-----------~~~~~~~~~~~~-~~-g~~~~~LL~~lRv~~~~~~e~~~~~~-------~---~~~~  370 (441)
                      .+.|++.++..+           ..+++....|.. .+ ..++++||++||+++++++|++.+..       .   ....
T Consensus       335 ~v~l~l~~~~~d~l~~~K~~~L~~~gl~~~~~f~l~~~~~~~~~~Ll~~LRvl~~~~~el~~~~~~~~~~~~~~~l~~~~  414 (497)
T 3smt_A          335 RVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTEPPISAQLLAFLRVFCMTEEELKEHLLGDSAIDRIFTLGNSE  414 (497)
T ss_dssp             EEEEEEECCTTSTTHHHHHHHHHHTTCCSEEEEEEESSSSCSCHHHHHHHHHHTCCHHHHHHHHHTCSSSCTTTTTTCTT
T ss_pred             eEEEEecCCCcchhHHHHHHHHHHcCCCccceeeeecCCCCCCHHHHHHHHHHhCCHHHHHHHhcccchhhhhhhccccc
Confidence            999998875321           234444444533 23 24689999999999999999865421       1   0123


Q ss_pred             CccChhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhhhcc----cccHHHHHHHHHHHhhcchhhhhhhhc
Q 045070          371 HQLSVDNEISVMKWLSNNCLGMLNSLPTSKEEDALLLCAIDK----IQDIYTAMELKKVLSDFGGEVCTFLEN  439 (441)
Q Consensus       371 ~~ls~~nE~~~~~~L~~~~~~~L~~~~ttleeD~~~L~~~~~----~~~~~~~~~~k~~~~~~~~~~~~~~~~  439 (441)
                      .|+|.+||.+++++|...|..+|++|+||+|||+++|++...    ..++++|+++|+||+.+.+.+.+-.+-
T Consensus       415 ~piS~~nE~~v~~~L~~~~~~~L~~Y~TtieeDe~lL~~~~ls~r~r~Av~vR~gEK~IL~~~l~~~~~~~~~  487 (497)
T 3smt_A          415 FPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNREY  487 (497)
T ss_dssp             SCSCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999986544    346999999999999998888765543
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 441
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 3e-34
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  126 bits (317), Expect = 3e-34
 Identities = 61/312 (19%), Positives = 108/312 (34%), Gaps = 56/312 (17%)

Query: 5   DESLEKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELI 64
             +++   KW  E G+                    V       G GL A +D+++ ++I
Sbjct: 2   SPAVQTFWKWLQEEGVIT--------------AKTPVKASVVTEGLGLVALKDISRNDVI 47

Query: 65  LRVPKTALFTTECLLKSDQKLSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLL 124
           L+VPK      + +  S+     +      L P   +I+ L+ E    + S W  Y  +L
Sbjct: 48  LQVPKRLWINPDAVAASEIGRVCS-----ELKPWLSVILFLIRE-RSREDSVWKHYFGIL 101

Query: 125 PRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQAIK--LMEELKLKPQLLSFK 182
           P+  +    +   E Q LQ    +          ++E  +  +  ++   +L P  ++  
Sbjct: 102 PQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLD 161

Query: 183 AWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPK 242
            + WA   + SR      +E   + P+ DL N++                          
Sbjct: 162 DFFWAFGILRSRAFSRLRNENLVVVPMADLINHS------------------------AG 197

Query: 243 GDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYG-TYTNLELLE 301
             T D     K  A                +   +  + K GEQV + Y    +N EL  
Sbjct: 198 VTTEDHAYEVKGAA--------GLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELAL 249

Query: 302 HYGFLL-NENPN 312
            YGF+  NEN +
Sbjct: 250 DYGFIEPNENRH 261

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query441
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 100.0
d2h2ja1176 RuBisCo LSMT C-terminal, substrate-binding domain 99.41
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 97.16
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 96.17
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 95.24
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 95.23
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 94.15
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 85.67
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 84.24
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 82.73
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=1.9e-43  Score=336.46  Aligned_cols=256  Identities=22%  Similarity=0.293  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHHcCCccCccccccccccccCCceeEEecCCCCcceEEEcccCCCCCeEEeccCccccccccccccchH
Q 045070            5 DESLEKLLKWAAEMGITDSTIQNHSRSRNCLGHSLTVSHFPEAGGRGLAAARDLTKGELILRVPKTALFTTECLLKSDQK   84 (441)
Q Consensus         5 ~~~~~~l~~W~~~~G~~~~~~~~~~~~~~~~~~~l~i~~~~~~~GrGl~A~~~I~~g~~ll~IP~~~~ls~~~~~~~~~~   84 (441)
                      .-+.+.|++|++++|+..+              ++.+.....+.||||+|+++|++|++|++||.+++||..++..+  .
T Consensus         2 ~~~~~~~~~W~~~~g~~~~--------------~~~~~~~~~~~GrGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~--~   65 (261)
T d2h2ja2           2 SPAVQTFWKWLQEEGVITA--------------KTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAAS--E   65 (261)
T ss_dssp             CHHHHHHHHHHHTTTSSCS--------------SCCCEEEEETTEEEEECSSCCCTTCEEEEEEGGGCCSHHHHHTS--G
T ss_pred             ChHHHHHHHHHHHCCCccC--------------CceEeecCCCceeEEEECCcCCCCCEEEEeChHHhccHHHhhhh--H
Confidence            3578899999999999885              44444433345999999999999999999999999999877432  2


Q ss_pred             HHHHHhhcCCCChhHHHHHHHHHHhhCCCCCCchHHhhhcCCCCCcCcCCChhHHhhcCCchHHHHHHHHHHHHHHHHHH
Q 045070           85 LSLAVNRHLFLSPSQILIVCLLYEVGKGKSSWWYTYLMLLPRCYEILATFGPFEKQALQVDDAIWAAEKAVSKAESEWKQ  164 (441)
Q Consensus        85 l~~~l~~~~~l~~~~~Lal~Ll~e~~~~~~S~w~pYl~~LP~~~~~pl~w~~~el~~L~~~~~~~~~~~~~~~~~~~~~~  164 (441)
                      +.+.   .....++..|++++++|+. +..|.|++|+++||+.+++|++|+.++++.|+++.+...+....+.++++|..
T Consensus        66 ~~~~---~~~~~~~~~l~~~l~~e~~-~~~s~~~~y~~~lp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  141 (261)
T d2h2ja2          66 IGRV---CSELKPWLSVILFLIRERS-REDSVWKHYFGILPQETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLK  141 (261)
T ss_dssp             GGTT---TTTSCHHHHHHHHHHHHHH-CTTCTTHHHHTTSCSCCSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHH---HhhcCcHHHHHHHHHHHHh-CCCCchhhhhhccccccCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence            2222   2346678899999999996 89999999999999999999999999999999999999888888888889888


Q ss_pred             HHHHHHh-c-CCCCcccCHHHHHHHHHHHhhcceeeCCCCCcccCCcccccccCCCCCCCCCCCCcccccCCCCCCCCCC
Q 045070          165 AIKLMEE-L-KLKPQLLSFKAWLWASATVSSRTMHISWDEAGCLCPVGDLFNYAAPGEGEESNIGIEDVEGWMPAPCLPK  242 (441)
Q Consensus       165 ~~~~l~~-~-~~~~~~~t~e~f~WA~~~v~SRa~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~~p~~d~~n  242 (441)
                      +...+.. . ......++++.|.||+++|.||+|.++.....+|+|++||+||++.+.                      
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~v~sr~~~~~~~~~~~l~P~~d~~NHsc~pn----------------------  199 (261)
T d2h2ja2         142 LEQEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVT----------------------  199 (261)
T ss_dssp             HHHHTTTTTTTTCCSCCCHHHHHHHHHHHHHHSBCCC---CCBCCTTGGGCEECSSCC----------------------
T ss_pred             HHHHHHhhhhhhccCccCHHHHHHHHHHhhcccccccccccccchhhhHHhhcCCCCC----------------------
Confidence            7654422 1 233456899999999999999999988777889999999999997642                      


Q ss_pred             CCCCccccchhhhccccccCCCCcccCCceEEEEEecccCCCceEEeccCC-CCcHHHHHhcCcccCC-CCC
Q 045070          243 GDTTDVLDSEKFNAHLHRLTDGRFEEDVNSYCFYARNNYKRGEQVLLSYGT-YTNLELLEHYGFLLNE-NPN  312 (441)
Q Consensus       243 ~~~~~~~~~~~f~~~~~~~~~g~~~~~~~~~~l~a~~~i~~Geev~isYG~-~sN~~LL~~YGFv~~~-Np~  312 (441)
                          +..   .|+.   .-..+.+...++.++++|.|+|++|||||||||+ ++|++||.+||||+++ |||
T Consensus       200 ----~~~---~~~~---~~~~~~~~~~~~~~~l~A~r~I~~GEEI~isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         200 ----TED---HAYE---VKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             ----SCC---CCCC--------------CEEEEECSSCCCTTSBCEECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             ----ccc---cccc---ccCcccccCCCcEEEEEECCCCCCCCEEEEecCCCCCHHHHHHhCCCCCCCCCCC
Confidence                110   0000   0000112233568999999999999999999996 7999999999999885 887
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure