Query 045071
Match_columns 453
No_of_seqs 209 out of 2127
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 09:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 1.8E-22 3.9E-27 208.1 24.9 239 139-404 274-542 (557)
2 KOG4441 Proteins containing BT 99.9 7E-22 1.5E-26 202.9 25.0 239 138-404 302-555 (571)
3 TIGR01640 F_box_assoc_1 F-box 99.9 5.8E-21 1.3E-25 176.1 25.3 214 164-397 1-230 (230)
4 KOG4441 Proteins containing BT 99.8 2.3E-18 4.9E-23 177.1 22.0 219 166-410 282-514 (571)
5 PHA03098 kelch-like protein; P 99.8 6.7E-18 1.5E-22 175.1 24.1 241 141-407 268-523 (534)
6 PHA02790 Kelch-like protein; P 99.8 1.4E-17 3E-22 169.5 24.2 200 164-402 267-477 (480)
7 PHA02713 hypothetical protein; 99.8 8.1E-18 1.8E-22 173.6 22.7 206 182-410 273-504 (557)
8 PLN02153 epithiospecifier prot 99.8 8.1E-17 1.8E-21 157.4 26.4 239 145-404 5-293 (341)
9 TIGR03547 muta_rot_YjhT mutatr 99.8 2.7E-16 5.9E-21 154.1 26.5 232 162-409 11-312 (346)
10 TIGR03548 mutarot_permut cycli 99.8 3.5E-16 7.5E-21 151.8 25.3 249 164-436 9-320 (323)
11 PHA02790 Kelch-like protein; P 99.8 7.8E-17 1.7E-21 164.0 20.9 189 138-349 288-476 (480)
12 PLN02193 nitrile-specifier pro 99.7 9.2E-16 2E-20 155.7 27.9 244 140-405 140-420 (470)
13 PLN03215 ascorbic acid mannose 99.7 4.5E-16 9.9E-21 148.6 21.6 309 50-402 3-353 (373)
14 PLN02153 epithiospecifier prot 99.7 4.9E-15 1.1E-19 144.8 24.6 206 138-351 51-292 (341)
15 PRK14131 N-acetylneuraminic ac 99.7 4.6E-15 1E-19 146.7 24.2 233 163-410 33-335 (376)
16 PHA03098 kelch-like protein; P 99.7 1.9E-15 4.1E-20 156.8 21.4 201 138-355 312-523 (534)
17 PRK14131 N-acetylneuraminic ac 99.6 8.5E-14 1.8E-18 137.7 25.3 242 139-400 52-373 (376)
18 TIGR03547 muta_rot_YjhT mutatr 99.6 7.1E-14 1.5E-18 137.0 24.0 225 139-385 31-330 (346)
19 PLN02193 nitrile-specifier pro 99.6 8E-14 1.7E-18 141.6 24.0 206 138-354 194-421 (470)
20 TIGR03548 mutarot_permut cycli 99.6 9.7E-14 2.1E-18 134.7 22.7 216 148-384 52-311 (323)
21 KOG4693 Uncharacterized conser 99.1 1.1E-08 2.4E-13 91.2 17.3 227 139-385 46-311 (392)
22 KOG4693 Uncharacterized conser 99.0 1.5E-08 3.2E-13 90.3 14.9 205 180-403 43-284 (392)
23 PF08268 FBA_3: F-box associat 99.0 1.1E-08 2.3E-13 85.2 11.8 85 268-355 1-93 (129)
24 KOG1230 Protein containing rep 98.8 1.5E-07 3.3E-12 88.9 16.1 208 181-402 98-347 (521)
25 PF12937 F-box-like: F-box-lik 98.8 1.9E-09 4.1E-14 72.4 2.1 43 51-93 1-43 (47)
26 KOG0379 Kelch repeat-containin 98.8 7.9E-07 1.7E-11 90.6 20.5 205 182-406 89-312 (482)
27 KOG0379 Kelch repeat-containin 98.6 2.8E-06 6.2E-11 86.5 19.8 172 217-403 71-257 (482)
28 PF00646 F-box: F-box domain; 98.6 6.7E-09 1.5E-13 70.1 0.2 45 50-94 2-46 (48)
29 smart00256 FBOX A Receptor for 98.5 4.9E-08 1.1E-12 63.3 1.7 39 54-92 1-39 (41)
30 KOG1230 Protein containing rep 98.4 1.7E-05 3.7E-10 75.4 17.7 147 200-352 64-224 (521)
31 KOG4152 Host cell transcriptio 98.4 5.5E-06 1.2E-10 80.5 13.9 232 144-402 14-309 (830)
32 PF07734 FBA_1: F-box associat 98.3 1.2E-05 2.6E-10 69.7 12.4 82 268-354 1-94 (164)
33 KOG0281 Beta-TrCP (transducin 98.1 5.1E-05 1.1E-09 70.4 12.5 43 51-93 75-121 (499)
34 COG3055 Uncharacterized protei 97.9 0.00065 1.4E-08 63.9 15.4 164 181-356 58-268 (381)
35 PF13964 Kelch_6: Kelch motif 97.8 5.2E-05 1.1E-09 51.4 5.3 45 159-203 2-50 (50)
36 KOG4152 Host cell transcriptio 97.6 0.0053 1.1E-07 60.4 17.2 231 139-384 59-340 (830)
37 COG3055 Uncharacterized protei 97.5 0.0029 6.4E-08 59.6 14.4 161 238-410 61-270 (381)
38 KOG2120 SCF ubiquitin ligase, 97.5 4E-05 8.6E-10 70.4 2.0 42 49-90 96-137 (419)
39 PF01344 Kelch_1: Kelch motif; 97.3 0.00082 1.8E-08 44.6 6.0 44 308-354 4-47 (47)
40 PF13964 Kelch_6: Kelch motif 97.3 0.00082 1.8E-08 45.4 5.7 39 370-408 5-49 (50)
41 PF07646 Kelch_2: Kelch motif; 97.0 0.0012 2.7E-08 44.3 4.2 45 308-354 4-49 (49)
42 PF01344 Kelch_1: Kelch motif; 96.5 0.0044 9.6E-08 41.0 4.0 38 369-406 4-47 (47)
43 PF13418 Kelch_4: Galactose ox 96.2 0.0092 2E-07 39.9 4.3 44 309-355 5-49 (49)
44 PF13360 PQQ_2: PQQ-like domai 95.8 1.4 3E-05 40.1 21.3 187 167-401 35-236 (238)
45 PF10282 Lactonase: Lactonase, 95.5 1.1 2.4E-05 43.8 17.6 258 140-432 18-302 (345)
46 KOG2437 Muskelin [Signal trans 95.4 0.017 3.7E-07 56.8 4.3 138 264-403 262-420 (723)
47 smart00612 Kelch Kelch domain. 95.4 0.031 6.8E-07 36.5 4.3 35 218-259 1-35 (47)
48 PF07250 Glyoxal_oxid_N: Glyox 95.3 0.36 7.7E-06 44.4 12.3 151 236-406 47-209 (243)
49 COG4257 Vgb Streptogramin lyas 95.3 2.4 5.1E-05 39.3 19.1 220 141-404 87-314 (353)
50 KOG0274 Cdc4 and related F-box 95.2 1.9 4E-05 44.8 18.6 45 48-92 105-149 (537)
51 KOG2997 F-box protein FBX9 [Ge 95.2 0.0061 1.3E-07 56.6 0.4 44 51-94 107-155 (366)
52 smart00612 Kelch Kelch domain. 95.2 0.069 1.5E-06 34.8 5.5 28 180-207 14-41 (47)
53 PF08450 SGL: SMP-30/Gluconola 94.8 1.8 4E-05 39.8 15.9 194 168-406 11-223 (246)
54 PF07893 DUF1668: Protein of u 94.8 0.8 1.7E-05 44.7 13.9 132 271-408 75-222 (342)
55 PF13415 Kelch_3: Galactose ox 94.6 0.089 1.9E-06 35.1 4.9 28 181-208 19-46 (49)
56 PF13418 Kelch_4: Galactose ox 94.6 0.081 1.8E-06 35.2 4.6 31 376-406 12-48 (49)
57 PF07250 Glyoxal_oxid_N: Glyox 94.2 0.76 1.6E-05 42.2 11.5 142 139-295 48-201 (243)
58 TIGR01640 F_box_assoc_1 F-box 94.2 1.1 2.4E-05 40.9 12.8 119 270-403 3-135 (230)
59 PF07646 Kelch_2: Kelch motif; 94.0 0.16 3.4E-06 33.9 5.1 38 217-258 12-49 (49)
60 PF13415 Kelch_3: Galactose ox 94.0 0.13 2.8E-06 34.3 4.5 24 386-409 18-41 (49)
61 PRK11138 outer membrane biogen 93.9 7.5 0.00016 38.7 20.3 103 267-399 251-357 (394)
62 PRK11138 outer membrane biogen 93.6 8.3 0.00018 38.3 21.1 186 165-398 117-315 (394)
63 PF07893 DUF1668: Protein of u 93.2 1.6 3.5E-05 42.6 12.5 129 163-298 71-214 (342)
64 KOG2437 Muskelin [Signal trans 92.9 0.29 6.3E-06 48.5 6.7 153 186-349 234-418 (723)
65 smart00284 OLF Olfactomedin-li 92.6 5.5 0.00012 36.8 14.2 142 263-432 74-234 (255)
66 PF10282 Lactonase: Lactonase, 92.1 12 0.00027 36.4 19.1 171 208-403 147-332 (345)
67 PF02191 OLF: Olfactomedin-lik 90.7 14 0.0003 34.2 15.2 142 263-432 69-229 (250)
68 COG4257 Vgb Streptogramin lyas 88.3 15 0.00031 34.3 12.7 124 161-303 192-317 (353)
69 PLN02772 guanylate kinase 87.5 3.5 7.6E-05 40.6 9.0 71 266-342 28-107 (398)
70 PF05096 Glu_cyclase_2: Glutam 86.7 27 0.00058 32.5 15.0 174 235-434 68-243 (264)
71 TIGR03300 assembly_YfgL outer 86.6 34 0.00074 33.6 19.8 104 166-297 63-171 (377)
72 PRK11028 6-phosphogluconolacto 86.0 14 0.00031 35.5 12.7 106 274-396 3-111 (330)
73 TIGR03300 assembly_YfgL outer 84.2 44 0.00096 32.8 22.4 210 139-401 77-305 (377)
74 KOG2055 WD40 repeat protein [G 84.1 27 0.00059 34.7 12.9 106 272-397 268-376 (514)
75 PF13854 Kelch_5: Kelch motif 82.8 2.2 4.8E-05 27.2 3.6 35 306-343 5-40 (42)
76 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.7 32 0.0007 35.8 14.0 115 267-401 64-195 (527)
77 PF06433 Me-amine-dh_H: Methyl 82.6 49 0.0011 32.0 15.7 117 272-399 195-324 (342)
78 PLN02919 haloacid dehalogenase 81.5 1E+02 0.0023 35.1 22.6 121 272-403 694-841 (1057)
79 PLN02772 guanylate kinase 81.3 9.4 0.0002 37.7 8.9 76 309-397 28-110 (398)
80 PF13360 PQQ_2: PQQ-like domai 81.1 41 0.0009 30.2 16.1 135 237-399 5-144 (238)
81 TIGR03074 PQQ_membr_DH membran 80.1 21 0.00046 38.8 11.8 31 266-297 188-220 (764)
82 TIGR02658 TTQ_MADH_Hv methylam 79.7 64 0.0014 31.6 22.3 228 139-399 79-334 (352)
83 TIGR03866 PQQ_ABC_repeats PQQ- 78.7 36 0.00079 31.5 12.1 103 274-398 2-106 (300)
84 PF08450 SGL: SMP-30/Gluconola 78.5 23 0.0005 32.4 10.4 165 140-322 63-244 (246)
85 KOG1445 Tumor-specific antigen 78.3 22 0.00048 36.8 10.4 130 283-437 742-875 (1012)
86 PF12768 Rax2: Cortical protei 76.5 19 0.00042 33.9 9.2 106 235-352 16-130 (281)
87 KOG4341 F-box protein containi 76.1 1.4 3E-05 43.2 1.4 39 50-88 71-109 (483)
88 PLN02919 haloacid dehalogenase 74.6 1.6E+02 0.0036 33.6 22.7 114 273-399 752-892 (1057)
89 PF05096 Glu_cyclase_2: Glutam 73.6 67 0.0014 30.0 11.6 103 271-396 54-158 (264)
90 PF12768 Rax2: Cortical protei 73.3 40 0.00086 31.9 10.4 105 283-404 16-130 (281)
91 PRK04043 tolB translocation pr 72.9 76 0.0017 31.9 13.1 101 283-402 213-316 (419)
92 KOG2502 Tub family proteins [G 70.8 5.2 0.00011 38.2 3.8 39 49-87 43-89 (355)
93 PF13570 PQQ_3: PQQ-like domai 70.7 8.8 0.00019 24.0 3.8 25 267-292 16-40 (40)
94 smart00284 OLF Olfactomedin-li 68.6 1E+02 0.0022 28.7 13.5 145 166-322 81-242 (255)
95 COG2706 3-carboxymuconate cycl 68.4 1.2E+02 0.0025 29.4 20.7 113 279-403 163-284 (346)
96 PF13859 BNR_3: BNR repeat-lik 67.8 15 0.00033 35.2 6.4 67 283-355 149-218 (310)
97 PRK11028 6-phosphogluconolacto 66.3 1.2E+02 0.0027 28.9 25.9 119 274-406 188-317 (330)
98 COG1520 FOG: WD40-like repeat 65.9 87 0.0019 30.7 11.7 108 268-399 64-175 (370)
99 KOG3545 Olfactomedin and relat 65.8 1.1E+02 0.0024 28.1 11.7 167 249-445 56-242 (249)
100 PF02897 Peptidase_S9_N: Proly 64.8 84 0.0018 31.3 11.5 118 269-402 284-411 (414)
101 KOG0316 Conserved WD40 repeat- 64.6 1.1E+02 0.0025 27.9 18.8 226 168-436 28-285 (307)
102 COG4946 Uncharacterized protei 64.4 1.7E+02 0.0036 29.7 12.8 135 139-298 289-438 (668)
103 PF02191 OLF: Olfactomedin-lik 63.4 1.3E+02 0.0027 28.0 14.2 144 167-322 77-237 (250)
104 cd00216 PQQ_DH Dehydrogenases 63.2 1.1E+02 0.0025 31.4 12.3 30 267-297 56-87 (488)
105 TIGR02800 propeller_TolB tol-p 62.8 1.6E+02 0.0036 29.1 21.2 114 272-403 244-362 (417)
106 KOG4499 Ca2+-binding protein R 62.2 1.2E+02 0.0027 27.7 10.4 93 273-384 170-274 (310)
107 PRK05137 tolB translocation pr 61.4 1.8E+02 0.004 29.2 23.4 197 170-403 215-420 (435)
108 PF13013 F-box-like_2: F-box-l 58.9 7.3 0.00016 30.9 2.1 30 50-79 21-50 (109)
109 PTZ00334 trans-sialidase; Prov 58.2 34 0.00075 37.0 7.4 82 268-355 265-355 (780)
110 smart00564 PQQ beta-propeller 58.1 28 0.0006 20.2 4.2 25 269-294 3-27 (33)
111 TIGR02658 TTQ_MADH_Hv methylam 54.4 2.2E+02 0.0047 27.9 11.8 108 283-401 27-142 (352)
112 TIGR03075 PQQ_enz_alc_DH PQQ-d 53.7 2.3E+02 0.0051 29.5 12.7 115 167-298 68-198 (527)
113 PF03088 Str_synth: Strictosid 53.1 43 0.00093 25.5 5.3 39 283-325 37-77 (89)
114 TIGR03032 conserved hypothetic 51.6 54 0.0012 31.3 6.8 54 267-324 207-260 (335)
115 PRK04792 tolB translocation pr 50.5 2.9E+02 0.0062 28.0 21.0 103 283-403 286-390 (448)
116 COG4946 Uncharacterized protei 50.4 2.9E+02 0.0063 28.1 15.3 92 294-408 217-309 (668)
117 PRK05137 tolB translocation pr 49.0 2.9E+02 0.0064 27.7 22.4 188 180-402 181-373 (435)
118 PRK00178 tolB translocation pr 48.5 2.9E+02 0.0063 27.6 21.2 103 283-404 267-372 (430)
119 PF09372 PRANC: PRANC domain; 46.7 16 0.00034 28.3 2.2 25 49-73 70-94 (97)
120 PRK04922 tolB translocation pr 46.4 3.2E+02 0.0069 27.4 19.6 114 272-403 258-376 (433)
121 KOG0281 Beta-TrCP (transducin 46.1 87 0.0019 30.2 7.2 105 269-398 326-431 (499)
122 PLN03215 ascorbic acid mannose 44.7 1.2E+02 0.0026 29.9 8.4 29 292-323 189-217 (373)
123 PRK00178 tolB translocation pr 44.4 3.4E+02 0.0073 27.1 21.9 197 170-403 212-414 (430)
124 KOG2055 WD40 repeat protein [G 44.0 3.6E+02 0.0077 27.3 15.5 152 163-342 264-418 (514)
125 PF03178 CPSF_A: CPSF A subuni 43.5 3E+02 0.0065 26.2 11.2 99 283-403 62-167 (321)
126 TIGR03866 PQQ_ABC_repeats PQQ- 43.3 2.6E+02 0.0057 25.5 19.1 104 274-399 86-191 (300)
127 PTZ00420 coronin; Provisional 43.1 4.2E+02 0.0092 27.9 15.0 133 272-434 178-319 (568)
128 cd00216 PQQ_DH Dehydrogenases 42.1 4E+02 0.0087 27.3 16.0 58 238-298 74-137 (488)
129 KOG0286 G-protein beta subunit 42.1 3.1E+02 0.0067 26.0 11.7 50 283-342 166-218 (343)
130 PF14870 PSII_BNR: Photosynthe 42.0 3.2E+02 0.0069 26.1 16.7 141 238-403 38-182 (302)
131 TIGR02276 beta_rpt_yvtn 40-res 39.0 86 0.0019 19.1 4.5 25 375-399 2-26 (42)
132 KOG0646 WD40 repeat protein [G 38.8 4.3E+02 0.0092 26.7 15.5 31 368-398 278-310 (476)
133 PRK04922 tolB translocation pr 37.3 4.4E+02 0.0096 26.4 20.7 197 170-403 217-419 (433)
134 PTZ00421 coronin; Provisional 36.7 4.9E+02 0.011 26.8 22.2 116 272-401 179-296 (493)
135 PF03022 MRJP: Major royal jel 34.5 3E+02 0.0064 26.0 9.2 88 314-404 10-106 (287)
136 PF12217 End_beta_propel: Cata 33.3 2.1E+02 0.0046 26.6 7.3 56 269-324 197-258 (367)
137 PF01011 PQQ: PQQ enzyme repea 32.5 1.2E+02 0.0026 18.5 4.4 24 377-401 1-24 (38)
138 PRK04792 tolB translocation pr 32.4 5.4E+02 0.012 26.0 24.4 196 170-402 231-432 (448)
139 TIGR03032 conserved hypothetic 32.4 4.7E+02 0.01 25.2 10.3 130 266-407 106-243 (335)
140 PRK04043 tolB translocation pr 31.6 5.5E+02 0.012 25.8 23.6 201 170-403 202-408 (419)
141 KOG2321 WD40 repeat protein [G 31.0 2.9E+02 0.0064 28.7 8.6 21 274-295 147-167 (703)
142 COG2706 3-carboxymuconate cycl 28.3 5.6E+02 0.012 24.9 23.7 152 236-404 168-332 (346)
143 PLN00033 photosystem II stabil 28.3 6.1E+02 0.013 25.3 14.4 136 191-350 75-214 (398)
144 COG3386 Gluconolactonase [Carb 28.0 5.4E+02 0.012 24.6 13.2 53 271-324 222-276 (307)
145 PF13919 ASXH: Asx homology do 27.9 22 0.00048 29.6 0.3 46 46-91 39-104 (138)
146 PRK10115 protease 2; Provision 27.7 8.1E+02 0.018 26.5 23.0 117 270-404 277-403 (686)
147 PF02239 Cytochrom_D1: Cytochr 26.0 4.1E+02 0.0088 26.2 8.8 108 273-403 6-117 (369)
148 cd01207 Ena-Vasp Enabled-VASP- 25.7 1.6E+02 0.0036 23.4 4.8 40 182-223 10-51 (111)
149 COG3823 Glutamine cyclotransfe 24.5 1.9E+02 0.0042 26.0 5.4 72 310-397 50-121 (262)
150 smart00135 LY Low-density lipo 24.4 1.5E+02 0.0033 17.9 3.8 22 271-292 19-40 (43)
151 KOG0289 mRNA splicing factor [ 24.1 3.5E+02 0.0076 27.1 7.5 74 272-355 400-474 (506)
152 KOG0639 Transducin-like enhanc 23.0 5.2E+02 0.011 26.5 8.5 24 314-344 475-498 (705)
153 PF14583 Pectate_lyase22: Olig 22.7 7.6E+02 0.017 24.5 11.0 34 167-200 46-79 (386)
154 KOG2445 Nuclear pore complex c 22.3 1.1E+02 0.0025 29.0 3.8 40 314-355 182-221 (361)
155 KOG0647 mRNA export protein (c 22.2 7E+02 0.015 23.9 9.3 67 282-357 93-159 (347)
156 PF03022 MRJP: Major royal jel 22.2 3.1E+02 0.0066 26.0 6.9 30 375-404 195-228 (287)
157 TIGR03118 PEPCTERM_chp_1 conse 21.7 4.2E+02 0.0091 25.4 7.3 25 376-400 260-284 (336)
158 KOG1036 Mitotic spindle checkp 21.4 7.2E+02 0.016 23.7 10.7 104 269-398 61-166 (323)
159 cd01206 Homer Homer type EVH1 20.6 2.9E+02 0.0064 21.9 5.1 38 182-224 12-52 (111)
160 KOG3926 F-box proteins [Amino 20.5 87 0.0019 29.1 2.6 41 47-87 198-239 (332)
161 PRK02889 tolB translocation pr 20.0 8.8E+02 0.019 24.2 22.4 103 283-403 264-368 (427)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.91 E-value=1.8e-22 Score=208.07 Aligned_cols=239 Identities=14% Similarity=0.178 Sum_probs=178.6
Q ss_pred ceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCC----CCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcC
Q 045071 139 GYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHA----GAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTP 214 (453)
Q Consensus 139 ~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~----~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~ 214 (453)
...|||.+++|..++....++....++..+|.|++.|+.. ....+++|||.+++|..+|+|+.+|..+.++.. +
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~-~- 351 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI-D- 351 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-C-
Confidence 3579999999999873333444455677788888887742 134688999999999999999988876544333 2
Q ss_pred CceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC------------
Q 045071 215 TAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP------------ 282 (453)
Q Consensus 215 ~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~------------ 282 (453)
.|||++||..... ...++|+||+.+ ++|..+++||... ....++.++|+||++++..
T Consensus 352 --g~IYviGG~~~~~---~~~sve~Ydp~~----~~W~~~~~mp~~r--~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 352 --DTIYAIGGQNGTN---VERTIECYTMGD----DKWKMLPDMPIAL--SSYGMCVLDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred --CEEEEECCcCCCC---CCceEEEEECCC----CeEEECCCCCccc--ccccEEEECCEEEEEeCCCcccccccccccc
Confidence 3999999853221 235689999999 9999999998632 3345788999999997631
Q ss_pred -----------CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCC-CCeEEE
Q 045071 283 -----------FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACG-TLWAEI 350 (453)
Q Consensus 283 -----------~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~-~~W~~v 350 (453)
..+.+||+.+++|+.+ .|++..+..+.+++.+|+||++||..... ...-.+..||+++ ++|+.+
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~~~r~~~~~~~~~~~IYv~GG~~~~~---~~~~~ve~Ydp~~~~~W~~~ 496 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNIWETL-PNFWTGTIRPGVVSHKDDIYVVCDIKDEK---NVKTCIFRYNTNTYNGWELI 496 (557)
T ss_pred cccccccccccceEEEECCCCCeEeec-CCCCcccccCcEEEECCEEEEEeCCCCCC---ccceeEEEecCCCCCCeeEc
Confidence 3589999999999887 56665556667889999999999864321 0011467889988 799999
Q ss_pred eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC--CeEEEEECCCCceEEcCC
Q 045071 351 ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS--DKALLFDLCMKSWQWIPR 404 (453)
Q Consensus 351 ~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~--~~v~~Yd~~~~~W~~l~~ 404 (453)
..||... ....++..+|.||+.++.. ..+.+||+.+++|..+..
T Consensus 497 ~~m~~~r----------~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 497 TTTESRL----------SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred cccCccc----------ccceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 9998733 2345566799999986532 368999999999997754
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.90 E-value=7e-22 Score=202.92 Aligned_cols=239 Identities=16% Similarity=0.178 Sum_probs=189.4
Q ss_pred cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCC-C---CeeEEEEcCcccceecCCCCCCCCCcceEEEEEc
Q 045071 138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHA-G---AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVT 213 (453)
Q Consensus 138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~-~---~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~ 213 (453)
....|||..+.|..+....-++....+++.+|.||+.|+.. + .+.+.+|||.+++|..+|+|..+|....++...
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~- 380 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD- 380 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEEC-
Confidence 45689999999999884445665667889999999998765 2 357899999999999999999988876555543
Q ss_pred CCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC------CCEEEE
Q 045071 214 PTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS------PFSVLA 287 (453)
Q Consensus 214 ~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~ 287 (453)
.+||++||..... ...++|.||+.+ +.|..+++|+. .......++++|+||.+++. ...+.+
T Consensus 381 ---g~iYavGG~dg~~---~l~svE~YDp~~----~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 381 ---GKLYAVGGFDGEK---SLNSVECYDPVT----NKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred ---CEEEEEecccccc---ccccEEEecCCC----CcccccCCCCc--ceeeeEEEEECCEEEEEcCcCCCccccceEEE
Confidence 4999999864322 356899999999 99999999876 23335578899999999762 257999
Q ss_pred EECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCC
Q 045071 288 YDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAG 367 (453)
Q Consensus 288 yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~ 367 (453)
||+.+++|+.+ .||+..+....++..+|+||+|||..... ... .|..+|+.+++|+.+..|... +
T Consensus 449 YDP~t~~W~~~-~~M~~~R~~~g~a~~~~~iYvvGG~~~~~--~~~--~VE~ydp~~~~W~~v~~m~~~----------r 513 (571)
T KOG4441|consen 449 YDPETNTWTLI-APMNTRRSGFGVAVLNGKIYVVGGFDGTS--ALS--SVERYDPETNQWTMVAPMTSP----------R 513 (571)
T ss_pred EcCCCCceeec-CCcccccccceEEEECCEEEEECCccCCC--ccc--eEEEEcCCCCceeEcccCccc----------c
Confidence 99999999887 67776666677889999999999976521 122 477789999999999888752 2
Q ss_pred CcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEEcCC
Q 045071 368 NGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQWIPR 404 (453)
Q Consensus 368 ~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~l~~ 404 (453)
....++..++.||+.++. ...+..||+.+++|+..+.
T Consensus 514 s~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 514 SAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred ccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 345567789999998653 5689999999999999987
No 3
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.89 E-value=5.8e-21 Score=176.07 Aligned_cols=214 Identities=20% Similarity=0.343 Sum_probs=146.3
Q ss_pred eeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCC---cceEEEEEcC--CceEEEEEccCCCCccccccccee
Q 045071 164 ASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRL---FPSIGLKVTP--TAVDVTVAGDDLISPYAVKNLSSE 238 (453)
Q Consensus 164 ~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~---~~~~~~~~~~--~~ykvv~~g~~~~~~~~~~~~~~e 238 (453)
+++|+||||+... ..++||||.|++|+.||+++.++. ....++++++ +.|||+.+....... ....++
T Consensus 1 ~~sCnGLlc~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---~~~~~~ 73 (230)
T TIGR01640 1 VVPCDGLICFSYG----KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---NQSEHQ 73 (230)
T ss_pred CcccceEEEEecC----CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---CCccEE
Confidence 3689999988653 479999999999999997654311 1135777775 579999986532111 235679
Q ss_pred EEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC----C-EEEEEECCCCcEEE-eecCCccc--cCCCc
Q 045071 239 SFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP----F-SVLAYDISANAWFN-IQAPMRRF--LRSPS 310 (453)
Q Consensus 239 vyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~----~-~i~~yD~~~~~W~~-i~~p~~~~--~~~~~ 310 (453)
+|++.+ ++|+.+...+...... ..+++++|.+||+.... . .|++||+.+++|++ ++.|.... .....
T Consensus 74 Vys~~~----~~Wr~~~~~~~~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 74 VYTLGS----NSWRTIECSPPHHPLK-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred EEEeCC----CCccccccCCCCcccc-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 999999 9999987433221112 23899999999997532 2 79999999999995 76654321 12346
Q ss_pred eeeeCCeEEEEEEEeccCCCCCCcEEEEEeecC-CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--CC
Q 045071 311 LLDSNGKLILVAAVEKSKLNVPKSLRLWSLQAC-GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--SD 387 (453)
Q Consensus 311 lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~-~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~~ 387 (453)
|++++|+|+++..... ...++||.|++. ..+|++.-+++.....++... ....++.+++.|++.... ..
T Consensus 149 L~~~~G~L~~v~~~~~-----~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~---~~~~~~~~~g~I~~~~~~~~~~ 220 (230)
T TIGR01640 149 LINYKGKLAVLKQKKD-----TNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDD---NFLSGFTDKGEIVLCCEDENPF 220 (230)
T ss_pred EEEECCEEEEEEecCC-----CCcEEEEEECCCCCCceeEEEEEcCcchhhhhhh---eeEeEEeeCCEEEEEeCCCCce
Confidence 8899999999886432 135899999854 567999877763222222211 123456677888887654 23
Q ss_pred eEEEEECCCC
Q 045071 388 KALLFDLCMK 397 (453)
Q Consensus 388 ~v~~Yd~~~~ 397 (453)
.++.||++++
T Consensus 221 ~~~~y~~~~~ 230 (230)
T TIGR01640 221 YIFYYNVGEN 230 (230)
T ss_pred EEEEEeccCC
Confidence 3999999875
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.81 E-value=2.3e-18 Score=177.11 Aligned_cols=219 Identities=18% Similarity=0.204 Sum_probs=166.5
Q ss_pred ecCceEEEEecCCC----CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEE
Q 045071 166 SSGGLVCWVSDHAG----AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFH 241 (453)
Q Consensus 166 s~~Gll~~~~~~~~----~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyd 241 (453)
+..+.|++.|+... ...+..+||.+++|..+.+|+.+|....+++.-+ +||++||... ......++++||
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~----~lYv~GG~~~--~~~~l~~ve~YD 355 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG----KLYVVGGYDS--GSDRLSSVERYD 355 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECC----EEEEEccccC--CCcccceEEEec
Confidence 55666776665442 3467789999999999999998888655544433 9999998652 111457889999
Q ss_pred cccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC-----CEEEEEECCCCcEEEeecCCccccCCCceeeeCC
Q 045071 242 IDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP-----FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNG 316 (453)
Q Consensus 242 s~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~-----~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g 316 (453)
+.+ ++|..+++|... ......+.++|.||.+++.. ..+..||+.+++|+.+ .|++..+..+..++.+|
T Consensus 356 ~~~----~~W~~~a~M~~~--R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~m~~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 356 PRT----NQWTPVAPMNTK--RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-APMLTRRSGHGVAVLGG 428 (571)
T ss_pred CCC----CceeccCCccCc--cccceeEEECCEEEEEeccccccccccEEEecCCCCccccc-CCCCcceeeeEEEEECC
Confidence 999 999999999763 33355788999999998642 4799999999999887 66666556677889999
Q ss_pred eEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEE
Q 045071 317 KLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALL 391 (453)
Q Consensus 317 ~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~ 391 (453)
+||++||...... ... .+-.||+.++.|+.+..|+.. +..+.++..++.||+.++. ...+.+
T Consensus 429 ~iYi~GG~~~~~~-~l~--sve~YDP~t~~W~~~~~M~~~----------R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 429 KLYIIGGGDGSSN-CLN--SVECYDPETNTWTLIAPMNTR----------RSGFGVAVLNGKIYVVGGFDGTSALSSVER 495 (571)
T ss_pred EEEEEcCcCCCcc-ccc--eEEEEcCCCCceeecCCcccc----------cccceEEEECCEEEEECCccCCCccceEEE
Confidence 9999999654320 112 456678999999999999873 2345567789999998653 346899
Q ss_pred EECCCCceEEcCCCCCcCC
Q 045071 392 FDLCMKSWQWIPRCPYVQA 410 (453)
Q Consensus 392 Yd~~~~~W~~l~~~p~~~~ 410 (453)
||+.+++|..++.++..+.
T Consensus 496 ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred EcCCCCceeEcccCccccc
Confidence 9999999999987775544
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.80 E-value=6.7e-18 Score=175.10 Aligned_cols=241 Identities=14% Similarity=0.128 Sum_probs=168.2
Q ss_pred eeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCC----CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCc
Q 045071 141 LFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAG----AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTA 216 (453)
Q Consensus 141 ~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~----~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ 216 (453)
.|++..++|..++.... .....++..++.+++.|+... ...++++||.+++|..+|+|+.+|..+.++.. +
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~-~--- 342 (534)
T PHA03098 268 TNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF-N--- 342 (534)
T ss_pred ecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE-C---
Confidence 46666777777642211 122245556677777665422 23689999999999999999988876544332 2
Q ss_pred eEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC------CCEEEEEEC
Q 045071 217 VDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS------PFSVLAYDI 290 (453)
Q Consensus 217 ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~------~~~i~~yD~ 290 (453)
.+||++||..... ....+++||+.+ ++|+..+++|.. .....++.++|++|++++. ...+..||+
T Consensus 343 ~~lyv~GG~~~~~---~~~~v~~yd~~~----~~W~~~~~lp~~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 343 NRIYVIGGIYNSI---SLNTVESWKPGE----SKWREEPPLIFP--RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred CEEEEEeCCCCCE---ecceEEEEcCCC----CceeeCCCcCcC--CccceEEEECCEEEEECCcCCCCcccceEEEEeC
Confidence 3899999864211 245679999999 999999888753 2335568899999999763 146899999
Q ss_pred CCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcE
Q 045071 291 SANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGF 370 (453)
Q Consensus 291 ~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~ 370 (453)
.+++|+.+ .|+|..+.....+..+|+||++||...... ....-.+|.+|+.+++|+++..||... ...
T Consensus 414 ~t~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~r----------~~~ 481 (534)
T PHA03098 414 NTNKWSKG-SPLPISHYGGCAIYHDGKIYVIGGISYIDN-IKVYNIVESYNPVTNKWTELSSLNFPR----------INA 481 (534)
T ss_pred CCCeeeec-CCCCccccCceEEEECCEEEEECCccCCCC-CcccceEEEecCCCCceeeCCCCCccc----------ccc
Confidence 99999987 355554455567788999999998643210 000114889999999999998876421 112
Q ss_pred EEEeeCCEEEEEEcC-----CCeEEEEECCCCceEEcCCCCC
Q 045071 371 DTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQWIPRCPY 407 (453)
Q Consensus 371 ~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~l~~~p~ 407 (453)
..+..++.||+.++. ...+.+||+++++|..++..|-
T Consensus 482 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 482 SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred eEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 233458899987653 3579999999999999987663
No 6
>PHA02790 Kelch-like protein; Provisional
Probab=99.79 E-value=1.4e-17 Score=169.47 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=148.5
Q ss_pred eeecCceEEEEecCCC---CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEE
Q 045071 164 ASSSGGLVCWVSDHAG---AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF 240 (453)
Q Consensus 164 ~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evy 240 (453)
++..++.|++.|+... ...++.|||.+++|..+|+|+.+|....++ ..+ .+||++||... ..+++.|
T Consensus 267 ~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~---~~iYviGG~~~------~~sve~y 336 (480)
T PHA02790 267 STHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PAN---NKLYVVGGLPN------PTSVERW 336 (480)
T ss_pred eEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EEC---CEEEEECCcCC------CCceEEE
Confidence 3446778887776422 246788999999999999999888664432 333 38999998531 2457999
Q ss_pred EcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC---CEEEEEECCCCcEEEeecCCccccCCCceeeeCCe
Q 045071 241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP---FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGK 317 (453)
Q Consensus 241 ds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~---~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~ 317 (453)
++.+ ++|..+++||..+ ....++.++|+||++++.. ..+.+||+.+++|+.+ .|++..+..+.+++.+|+
T Consensus 337 dp~~----n~W~~~~~l~~~r--~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 337 FHGD----AAWVNMPSLLKPR--CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PSTYYPHYKSCALVFGRR 409 (480)
T ss_pred ECCC----CeEEECCCCCCCC--cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC-CCCCCccccceEEEECCE
Confidence 9998 9999999998632 2345788999999997642 4688999999999887 445544445567789999
Q ss_pred EEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEE
Q 045071 318 LILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLF 392 (453)
Q Consensus 318 L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Y 392 (453)
||++|+. .++ +|+.+++|+.+..|+... ....++..+|.||+.++. ...+.+|
T Consensus 410 IYv~GG~----------~e~--ydp~~~~W~~~~~m~~~r----------~~~~~~v~~~~IYviGG~~~~~~~~~ve~Y 467 (480)
T PHA02790 410 LFLVGRN----------AEF--YCESSNTWTLIDDPIYPR----------DNPELIIVDNKLLLIGGFYRGSYIDTIEVY 467 (480)
T ss_pred EEEECCc----------eEE--ecCCCCcEeEcCCCCCCc----------cccEEEEECCEEEEECCcCCCcccceEEEE
Confidence 9999952 133 567789999999987521 233456679999998752 2578999
Q ss_pred ECCCCceEEc
Q 045071 393 DLCMKSWQWI 402 (453)
Q Consensus 393 d~~~~~W~~l 402 (453)
|+++++|+..
T Consensus 468 d~~~~~W~~~ 477 (480)
T PHA02790 468 NNRTYSWNIW 477 (480)
T ss_pred ECCCCeEEec
Confidence 9999999754
No 7
>PHA02713 hypothetical protein; Provisional
Probab=99.79 E-value=8.1e-18 Score=173.64 Aligned_cols=206 Identities=10% Similarity=0.125 Sum_probs=151.6
Q ss_pred eEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcc
Q 045071 182 TLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLC 261 (453)
Q Consensus 182 ~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~ 261 (453)
.+..|||.+++|..+++|+.++....+++ .+ .+||++||..... .....++.||+.+ +.|..+++|+..+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~---~~IYviGG~~~~~--~~~~~v~~Yd~~~----n~W~~~~~m~~~R 342 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VD---NEIIIAGGYNFNN--PSLNKVYKINIEN----KIHVELPPMIKNR 342 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-EC---CEEEEEcCCCCCC--CccceEEEEECCC----CeEeeCCCCcchh
Confidence 57889999999999999998776544333 23 3899999852111 1235679999999 9999999998633
Q ss_pred cCCCCCeEEECCEEEEEecCC-----CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccC-C---C--
Q 045071 262 SLESGRMVQVNGKFYCMNYSP-----FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSK-L---N-- 330 (453)
Q Consensus 262 ~~~~~~~v~~~G~lY~~~~~~-----~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~-~---~-- 330 (453)
....++.++|+||++++.. ..+.+||+.+++|+.+ .|+|.......+++++|+||++||..... . .
T Consensus 343 --~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~-~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 343 --CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML-PDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM 419 (557)
T ss_pred --hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC-CCCCcccccccEEEECCEEEEEeCCCccccccccccc
Confidence 2345788999999998642 4689999999999987 46666666667888999999999864210 0 0
Q ss_pred --------CCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC------CeEEEEECCC
Q 045071 331 --------VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS------DKALLFDLCM 396 (453)
Q Consensus 331 --------~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~------~~v~~Yd~~~ 396 (453)
....-.++.||+.+++|+++..|+... ....++..+|.||+.++.. ..+.+||+++
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r----------~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT----------IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecCCCCccc----------ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 000125788899999999999997632 1223456789999987531 3468999999
Q ss_pred -CceEEcCCCCCcCC
Q 045071 397 -KSWQWIPRCPYVQA 410 (453)
Q Consensus 397 -~~W~~l~~~p~~~~ 410 (453)
++|+.++.+|..+.
T Consensus 490 ~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 490 YNGWELITTTESRLS 504 (557)
T ss_pred CCCeeEccccCcccc
Confidence 89999999987655
No 8
>PLN02153 epithiospecifier protein
Probab=99.78 E-value=8.1e-17 Score=157.36 Aligned_cols=239 Identities=17% Similarity=0.212 Sum_probs=158.1
Q ss_pred CCCCeEeccC----CCCCCCCeeeeecCceEEEEecCCC-----CeeEEEEcCcccceecCCCCC-CCCCc-ceEEEEEc
Q 045071 145 HELSWYRISF----ALVPSEFSPASSSGGLVCWVSDHAG-----AKTLILCNPVTGSLSQLPPTL-RPRLF-PSIGLKVT 213 (453)
Q Consensus 145 ~~~~w~~l~l----~~lp~~~~~~~s~~Gll~~~~~~~~-----~~~~~v~NP~T~~w~~LP~~~-~~r~~-~~~~~~~~ 213 (453)
....|.++.. ...|+..+.+++.++.|++.++... .+.++++|+.+++|..++++. .++.. ...+++..
T Consensus 5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~ 84 (341)
T PLN02153 5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV 84 (341)
T ss_pred cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence 4566887764 2245555556667888888776421 246899999999999998774 34421 11222221
Q ss_pred CCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCC-----CCcccCCCCCeEEECCEEEEEecCC------
Q 045071 214 PTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSL-----PRLCSLESGRMVQVNGKFYCMNYSP------ 282 (453)
Q Consensus 214 ~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~-----p~~~~~~~~~~v~~~G~lY~~~~~~------ 282 (453)
.-+||++|+..... ....+++||+.+ ++|+.++.| |. ....+.+++++++||++++..
T Consensus 85 --~~~iyv~GG~~~~~---~~~~v~~yd~~t----~~W~~~~~~~~~~~p~--~R~~~~~~~~~~~iyv~GG~~~~~~~~ 153 (341)
T PLN02153 85 --GTKLYIFGGRDEKR---EFSDFYSYDTVK----NEWTFLTKLDEEGGPE--ARTFHSMASDENHVYVFGGVSKGGLMK 153 (341)
T ss_pred --CCEEEEECCCCCCC---ccCcEEEEECCC----CEEEEeccCCCCCCCC--CceeeEEEEECCEEEEECCccCCCccC
Confidence 13899999853221 234679999999 999988766 32 222345678899999996531
Q ss_pred -----CEEEEEECCCCcEEEeecCC--ccccCCCceeeeCCeEEEEEEEeccCC----CCCCcEEEEEeecCCCCeEEEe
Q 045071 283 -----FSVLAYDISANAWFNIQAPM--RRFLRSPSLLDSNGKLILVAAVEKSKL----NVPKSLRLWSLQACGTLWAEIE 351 (453)
Q Consensus 283 -----~~i~~yD~~~~~W~~i~~p~--~~~~~~~~lv~~~g~L~vv~~~~~~~~----~~~~~i~vw~ld~~~~~W~~v~ 351 (453)
..+.+||+++++|+.++.+. +..+..+.++..+|+||++++...... .....-.++.||..+++|+++.
T Consensus 154 ~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 154 TPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred CCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecc
Confidence 35899999999999875321 123344467789999999988542100 0001125788888899999986
Q ss_pred ec---CHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--------------CCeEEEEECCCCceEEcCC
Q 045071 352 RM---PQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--------------SDKALLFDLCMKSWQWIPR 404 (453)
Q Consensus 352 ~m---p~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--------------~~~v~~Yd~~~~~W~~l~~ 404 (453)
.+ |. .+....++..++.||+.+.. .+.+.+||+++++|+.+..
T Consensus 234 ~~g~~P~----------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~ 293 (341)
T PLN02153 234 TTGAKPS----------ARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGE 293 (341)
T ss_pred ccCCCCC----------CcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccC
Confidence 53 33 11234456678999998653 1378999999999999863
No 9
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.76 E-value=2.7e-16 Score=154.11 Aligned_cols=232 Identities=14% Similarity=0.119 Sum_probs=153.0
Q ss_pred eeeeecCceEEEEecCCCCeeEEEEcC--cccceecCCCCC-CCCCcceEEEEEcCCceEEEEEccCCCCc---cccccc
Q 045071 162 SPASSSGGLVCWVSDHAGAKTLILCNP--VTGSLSQLPPTL-RPRLFPSIGLKVTPTAVDVTVAGDDLISP---YAVKNL 235 (453)
Q Consensus 162 ~~~~s~~Gll~~~~~~~~~~~~~v~NP--~T~~w~~LP~~~-~~r~~~~~~~~~~~~~ykvv~~g~~~~~~---~~~~~~ 235 (453)
...++.++.|++.++.. ...++++|+ .+++|..+|+|+ .+|..+.++. .+ .+||++|+..... ......
T Consensus 11 ~~~~~~~~~vyv~GG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~-~~---~~iYv~GG~~~~~~~~~~~~~~ 85 (346)
T TIGR03547 11 GTGAIIGDKVYVGLGSA-GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA-ID---GKLYVFGGIGKANSEGSPQVFD 85 (346)
T ss_pred ceEEEECCEEEEEcccc-CCeeEEEECCCCCCCceECCCCCCCCcccceEEE-EC---CEEEEEeCCCCCCCCCcceecc
Confidence 34556788888877653 346788885 688999999998 4676544332 33 3899999853211 001235
Q ss_pred ceeEEEcccCCCCCcccccC-CCCCcccCCCCCeE-EECCEEEEEecCC-------------------------------
Q 045071 236 SSESFHIDAGGFFSLWGTTS-SLPRLCSLESGRMV-QVNGKFYCMNYSP------------------------------- 282 (453)
Q Consensus 236 ~~evyds~~~~~~~~W~~~~-~~p~~~~~~~~~~v-~~~G~lY~~~~~~------------------------------- 282 (453)
.+++||+.+ ++|+.++ .+|+ ......++ .++|+||++++..
T Consensus 86 ~v~~Yd~~~----~~W~~~~~~~p~--~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T TIGR03547 86 DVYRYDPKK----NSWQKLDTRSPV--GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQ 159 (346)
T ss_pred cEEEEECCC----CEEecCCCCCCC--cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCC
Confidence 689999999 9999986 3443 22212233 6899999997531
Q ss_pred --------CEEEEEECCCCcEEEeecCCcc-ccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeec
Q 045071 283 --------FSVLAYDISANAWFNIQAPMRR-FLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERM 353 (453)
Q Consensus 283 --------~~i~~yD~~~~~W~~i~~p~~~-~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~m 353 (453)
..+.+||+.+++|+.+ .|+|. ......++..+|+||++|+...... ....+.++.++++.++|+++..|
T Consensus 160 ~~~~~~~~~~v~~YDp~t~~W~~~-~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~~~y~~~~~~~~W~~~~~m 237 (346)
T TIGR03547 160 PPEDYFWNKNVLSYDPSTNQWRNL-GENPFLGTAGSAIVHKGNKLLLINGEIKPGL-RTAEVKQYLFTGGKLEWNKLPPL 237 (346)
T ss_pred ChhHcCccceEEEEECCCCceeEC-ccCCCCcCCCceEEEECCEEEEEeeeeCCCc-cchheEEEEecCCCceeeecCCC
Confidence 4689999999999987 34543 2344567789999999999753221 11233445555667899999999
Q ss_pred CHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC----------------------CeEEEEECCCCceEEcCCCCCcC
Q 045071 354 PQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS----------------------DKALLFDLCMKSWQWIPRCPYVQ 409 (453)
Q Consensus 354 p~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~----------------------~~v~~Yd~~~~~W~~l~~~p~~~ 409 (453)
|..... . ..+.....++..++.||+.+... ..+.+||+++++|+.++.+|..+
T Consensus 238 ~~~r~~-~--~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~ 312 (346)
T TIGR03547 238 PPPKSS-S--QEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL 312 (346)
T ss_pred CCCCCC-c--cccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc
Confidence 752100 0 00001222345689999986421 25789999999999999888654
No 10
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.76 E-value=3.5e-16 Score=151.78 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=157.6
Q ss_pred eeecCceEEEEecCCCC-------------eeEEEE-cCccc-ceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCC
Q 045071 164 ASSSGGLVCWVSDHAGA-------------KTLILC-NPVTG-SLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLIS 228 (453)
Q Consensus 164 ~~s~~Gll~~~~~~~~~-------------~~~~v~-NP~T~-~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~ 228 (453)
.+..++.|++.++.+.. ..++++ ++..+ +|..+++|+.+|.+... ..++ -+||++|+....
T Consensus 9 ~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~-~~~~---~~lyviGG~~~~ 84 (323)
T TIGR03548 9 AGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGAS-VSVE---NGIYYIGGSNSS 84 (323)
T ss_pred eeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEE-EEEC---CEEEEEcCCCCC
Confidence 44556666666653221 246666 45433 79999999988865433 3333 389999885322
Q ss_pred cccccccceeEEEcccCCCCCcc----cccCCCCCcccCCCCCeEEECCEEEEEecC-----CCEEEEEECCCCcEEEee
Q 045071 229 PYAVKNLSSESFHIDAGGFFSLW----GTTSSLPRLCSLESGRMVQVNGKFYCMNYS-----PFSVLAYDISANAWFNIQ 299 (453)
Q Consensus 229 ~~~~~~~~~evyds~~~~~~~~W----~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~yD~~~~~W~~i~ 299 (453)
. ....++.||..+ +.| +.+++||.. .....+++++|+||++++. ...+.+||+.+++|+.++
T Consensus 85 ~---~~~~v~~~d~~~----~~w~~~~~~~~~lp~~--~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 155 (323)
T TIGR03548 85 E---RFSSVYRITLDE----SKEELICETIGNLPFT--FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP 155 (323)
T ss_pred C---CceeEEEEEEcC----CceeeeeeEcCCCCcC--ccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC
Confidence 1 234678899988 777 667778753 2235578899999999763 257999999999999874
Q ss_pred cCCcc-ccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCE
Q 045071 300 APMRR-FLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEF 378 (453)
Q Consensus 300 ~p~~~-~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~ 378 (453)
++|. .+..+.++..+++||++|+..... ..+++++|+.+++|+++..|+..- ... .......++..++.
T Consensus 156 -~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-----~~~~~~yd~~~~~W~~~~~~~~~~---~p~-~~~~~~~~~~~~~~ 225 (323)
T TIGR03548 156 -DFPGEPRVQPVCVKLQNELYVFGGGSNIA-----YTDGYKYSPKKNQWQKVADPTTDS---EPI-SLLGAASIKINESL 225 (323)
T ss_pred -CCCCCCCCcceEEEECCEEEEEcCCCCcc-----ccceEEEecCCCeeEECCCCCCCC---Cce-eccceeEEEECCCE
Confidence 3332 234445678999999999854321 235788999899999988764210 000 00011122334678
Q ss_pred EEEEEcCC-------------------------------------CeEEEEECCCCceEEcCCCCCcCCCCCCCC-CCCC
Q 045071 379 IVIVIRGS-------------------------------------DKALLFDLCMKSWQWIPRCPYVQANNCGGN-YGDG 420 (453)
Q Consensus 379 I~l~~~~~-------------------------------------~~v~~Yd~~~~~W~~l~~~p~~~~~~~~~~-~~~~ 420 (453)
||+.+... +.+.+||+.+++|+.++.+|...+. ++++ ...+
T Consensus 226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~-~~~~~~~~~ 304 (323)
T TIGR03548 226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARC-GAALLLTGN 304 (323)
T ss_pred EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccC-chheEEECC
Confidence 88875421 4699999999999999877743221 2221 1112
Q ss_pred CceeEEEEeccccCCc
Q 045071 421 EGELHGFAYEPRLATP 436 (453)
Q Consensus 421 ~~~~~~~~f~P~l~~~ 436 (453)
..++.|..-.|...+|
T Consensus 305 ~iyv~GG~~~pg~rt~ 320 (323)
T TIGR03548 305 NIFSINGELKPGVRTP 320 (323)
T ss_pred EEEEEeccccCCcCCc
Confidence 3555666667766654
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=99.75 E-value=7.8e-17 Score=163.97 Aligned_cols=189 Identities=13% Similarity=0.164 Sum_probs=143.7
Q ss_pred cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCce
Q 045071 138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAV 217 (453)
Q Consensus 138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~y 217 (453)
....|||..++|..++....|+....+++.+|.|++.|+......+..|||.+++|..+|+|+.+|..+.++. .+ .
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~-~~---g 363 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS-IN---N 363 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE-EC---C
Confidence 3467999999999988544566555667789999998875444567899999999999999998887654433 33 3
Q ss_pred EEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCcEEE
Q 045071 218 DVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFN 297 (453)
Q Consensus 218 kvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~ 297 (453)
+||++||.... ..++|.||+++ +.|+.+++|+..+. ...++.++|+||++++ ...+||+++++|+.
T Consensus 364 ~IYviGG~~~~-----~~~ve~ydp~~----~~W~~~~~m~~~r~--~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~ 429 (480)
T PHA02790 364 VIYVIGGHSET-----DTTTEYLLPNH----DQWQFGPSTYYPHY--KSCALVFGRRLFLVGR---NAEFYCESSNTWTL 429 (480)
T ss_pred EEEEecCcCCC-----CccEEEEeCCC----CEEEeCCCCCCccc--cceEEEECCEEEEECC---ceEEecCCCCcEeE
Confidence 99999985321 24679999999 99999998875322 2456789999999975 37899999999998
Q ss_pred eecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEE
Q 045071 298 IQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAE 349 (453)
Q Consensus 298 i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~ 349 (453)
+ .|++..+....++..+|+||++||..... ... .|..||+.+++|+-
T Consensus 430 ~-~~m~~~r~~~~~~v~~~~IYviGG~~~~~--~~~--~ve~Yd~~~~~W~~ 476 (480)
T PHA02790 430 I-DDPIYPRDNPELIIVDNKLLLIGGFYRGS--YID--TIEVYNNRTYSWNI 476 (480)
T ss_pred c-CCCCCCccccEEEEECCEEEEECCcCCCc--ccc--eEEEEECCCCeEEe
Confidence 7 45665556677889999999999965321 112 46777888999964
No 12
>PLN02193 nitrile-specifier protein
Probab=99.75 E-value=9.2e-16 Score=155.72 Aligned_cols=244 Identities=16% Similarity=0.200 Sum_probs=161.4
Q ss_pred eeeeCCC----CCeEeccCC---CCCCCCeeeeecCceEEEEecCCC-----CeeEEEEcCcccceecCCCCC-CCCC-c
Q 045071 140 YLFDPHE----LSWYRISFA---LVPSEFSPASSSGGLVCWVSDHAG-----AKTLILCNPVTGSLSQLPPTL-RPRL-F 205 (453)
Q Consensus 140 ~~fdp~~----~~w~~l~l~---~lp~~~~~~~s~~Gll~~~~~~~~-----~~~~~v~NP~T~~w~~LP~~~-~~r~-~ 205 (453)
+.++|.. ++|..+... ..|+..+.++..++.|++.++... ...++++|+.+++|..++++. .|+. .
T Consensus 140 y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~ 219 (470)
T PLN02193 140 YISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSC 219 (470)
T ss_pred EEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcc
Confidence 4456644 789988732 345655556666777777766321 135899999999999987652 2221 1
Q ss_pred ceEEE-EEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCc-ccCCCCCeEEECCEEEEEecC--
Q 045071 206 PSIGL-KVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRL-CSLESGRMVQVNGKFYCMNYS-- 281 (453)
Q Consensus 206 ~~~~~-~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~-~~~~~~~~v~~~G~lY~~~~~-- 281 (453)
...++ .++ -+||++|+..... ....+++||+.+ ++|+.+.+++.. .....+.++.++++||++++.
T Consensus 220 ~~~~~v~~~---~~lYvfGG~~~~~---~~ndv~~yD~~t----~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~ 289 (470)
T PLN02193 220 LGVRMVSIG---STLYVFGGRDASR---QYNGFYSFDTTT----NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSA 289 (470)
T ss_pred cceEEEEEC---CEEEEECCCCCCC---CCccEEEEECCC----CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCC
Confidence 11222 233 3899998853221 234678999999 999998776210 122234567789999999753
Q ss_pred ---CCEEEEEECCCCcEEEeecC--CccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHH
Q 045071 282 ---PFSVLAYDISANAWFNIQAP--MRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQ 356 (453)
Q Consensus 282 ---~~~i~~yD~~~~~W~~i~~p--~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~ 356 (453)
...+.+||+.+++|+.+..| ++..+..+.++..+|+||++++..... .-.+|.||..+++|+++..++..
T Consensus 290 ~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-----~~dv~~yD~~t~~W~~~~~~g~~ 364 (470)
T PLN02193 290 TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-----VDDVHYYDPVQDKWTQVETFGVR 364 (470)
T ss_pred CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-----cCceEEEECCCCEEEEeccCCCC
Confidence 24689999999999987543 223334556777899999999864321 12688999989999998765210
Q ss_pred HHHHhhcccCCCcEEEEeeCCEEEEEEcC--------------CCeEEEEECCCCceEEcCCC
Q 045071 357 LYAQFAEIEAGNGFDTIGHGEFIVIVIRG--------------SDKALLFDLCMKSWQWIPRC 405 (453)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--------------~~~v~~Yd~~~~~W~~l~~~ 405 (453)
- ..+....++..++.||+.+.. .+.+.+||+.+++|+.++.+
T Consensus 365 P-------~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~ 420 (470)
T PLN02193 365 P-------SERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKF 420 (470)
T ss_pred C-------CCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccC
Confidence 0 011233455678899987652 13589999999999998754
No 13
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.73 E-value=4.5e-16 Score=148.61 Aligned_cols=309 Identities=12% Similarity=0.157 Sum_probs=164.8
Q ss_pred ccCCChHHHHHHHHhcCC-hhhhhhhhhccccccccccCccchhhhhccCCCCceEEEEeccCCcccccceeeecCCccc
Q 045071 50 IWSKLPQRLLDRVLAFLP-PPAFFRARAVCKRWYGLLFSNSFLELYIHVSPRHHWFLFFNQKTPLIKTTSYIYTTNNNSI 128 (453)
Q Consensus 50 ~w~~LP~dll~~IL~rLp-~~~l~r~r~VCK~W~~~i~s~~F~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 128 (453)
.|++||+|||+.|..||| ..+++|||+|||.||+.+.... . ....++.||++........ .+.. ...+
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~-~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~- 71 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---K-KNPFRTRPLILFNPINPSE-----TLTD-DRSY- 71 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---c-cCCcccccccccCcccCCC-----Cccc-cccc-
Confidence 599999999999999997 5699999999999999876411 0 0001223555532100000 0000 0000
Q ss_pred ccccccccccceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCC--CCC--
Q 045071 129 RSAAAATCCEGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLR--PRL-- 204 (453)
Q Consensus 129 ~~~~~~~~~~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~--~r~-- 204 (453)
. +.....+.+. ...+++++ .++..|+|.-.........+.+.||+++.-..+|+... -..
T Consensus 72 ----~--~~~~~~ls~~--~~~r~~~~--------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v 135 (373)
T PLN03215 72 ----I--SRPGAFLSRA--AFFRVTLS--------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTV 135 (373)
T ss_pred ----c--ccccceeeee--EEEEeecC--------CCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEE
Confidence 0 0000011111 12233211 13567888876554345678899999998766664210 000
Q ss_pred ---cceEEEEE-cCC-----ce--EEEEEccCCCCc--cccc--ccceeEEEcccCCCCCcccccCCCCCcccCCCCCeE
Q 045071 205 ---FPSIGLKV-TPT-----AV--DVTVAGDDLISP--YAVK--NLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMV 269 (453)
Q Consensus 205 ---~~~~~~~~-~~~-----~y--kvv~~g~~~~~~--~~~~--~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v 269 (453)
.....+.. ... .| ++++. -...+. +++. .....+..... +.|+.+..+.. .-.+.+
T Consensus 136 ~ei~~~y~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vl~i~~~g~l~~w~~----~~Wt~l~~~~~----~~~DIi 206 (373)
T PLN03215 136 SEIREAYQVLDWAKRRETRPGYQRSALVK-VKEGDNHRDGVLGIGRDGKINYWDG----NVLKALKQMGY----HFSDII 206 (373)
T ss_pred EEccceEEEEecccccccccceeEEEEEE-eecCCCcceEEEEEeecCcEeeecC----CeeeEccCCCc----eeeEEE
Confidence 00001100 000 12 22221 110111 1110 00011111223 78998865332 125789
Q ss_pred EECCEEEEEecCCCEEEEEECCCCcEEEeecCCc-----cc-cCCCceeeeCCeEEEEEEEeccC----------CCCCC
Q 045071 270 QVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMR-----RF-LRSPSLLDSNGKLILVAAVEKSK----------LNVPK 333 (453)
Q Consensus 270 ~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~-----~~-~~~~~lv~~~g~L~vv~~~~~~~----------~~~~~ 333 (453)
+++|++|.++.. ..+.++|..-+ -.++..+.. .. ....++|++.|+|++|....... ...+.
T Consensus 207 ~~kGkfYAvD~~-G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~ 284 (373)
T PLN03215 207 VHKGQTYALDSI-GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTV 284 (373)
T ss_pred EECCEEEEEcCC-CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCccccccccccccccee
Confidence 999999999654 57888874321 112211110 11 12357999999999999853211 11235
Q ss_pred cEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEE------eeCCEEEEEEcCCCeEEEEECCCCceEEc
Q 045071 334 SLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTI------GHGEFIVIVIRGSDKALLFDLCMKSWQWI 402 (453)
Q Consensus 334 ~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~------~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l 402 (453)
.++||++|.+..+|++|.+|+.... |.... ..+.+. ..+|+||+... ....+||++.++-..+
T Consensus 285 ~f~VfklD~~~~~WveV~sLgd~aL--FlG~~--~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 285 GFKVYKFDDELAKWMEVKTLGDNAF--VMATD--TCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNGSSI 353 (373)
T ss_pred EEEEEEEcCCCCcEEEecccCCeEE--EEECC--ccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCccce
Confidence 7899999988899999999987321 11111 122221 24799999854 5567999999985444
No 14
>PLN02153 epithiospecifier protein
Probab=99.70 E-value=4.9e-15 Score=144.78 Aligned_cols=206 Identities=14% Similarity=0.121 Sum_probs=137.6
Q ss_pred cceeeeCCCCCeEecc-CCCCCCC---CeeeeecCceEEEEecCCC---CeeEEEEcCcccceecCCCC-----CCCCCc
Q 045071 138 EGYLFDPHELSWYRIS-FALVPSE---FSPASSSGGLVCWVSDHAG---AKTLILCNPVTGSLSQLPPT-----LRPRLF 205 (453)
Q Consensus 138 ~~~~fdp~~~~w~~l~-l~~lp~~---~~~~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w~~LP~~-----~~~r~~ 205 (453)
..+.||+..++|..++ ++..|+. ...+++.++.|++.++... ...+++|||.+++|..+++| +.+|..
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~ 130 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTF 130 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCcee
Confidence 4578999999999876 3334442 2345667888888776422 24689999999999999887 455655
Q ss_pred ceEEEEEcCCceEEEEEccCCCCcc---cccccceeEEEcccCCCCCcccccCCCCCc-ccCCCCCeEEECCEEEEEecC
Q 045071 206 PSIGLKVTPTAVDVTVAGDDLISPY---AVKNLSSESFHIDAGGFFSLWGTTSSLPRL-CSLESGRMVQVNGKFYCMNYS 281 (453)
Q Consensus 206 ~~~~~~~~~~~ykvv~~g~~~~~~~---~~~~~~~evyds~~~~~~~~W~~~~~~p~~-~~~~~~~~v~~~G~lY~~~~~ 281 (453)
+.++. .+ -|||++|+...... ......+++||+++ ++|+.++.+... ........+.++|++|++.+.
T Consensus 131 ~~~~~-~~---~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~----~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 131 HSMAS-DE---NHVYVFGGVSKGGLMKTPERFRTIEAYNIAD----GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred eEEEE-EC---CEEEEECCccCCCccCCCcccceEEEEECCC----CeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence 44322 22 38999988532110 00123578999999 999988765321 122224467799999998532
Q ss_pred -------------CCEEEEEECCCCcEEEeec--CCccccCCCceeeeCCeEEEEEEEeccC---C-C-CCCcEEEEEee
Q 045071 282 -------------PFSVLAYDISANAWFNIQA--PMRRFLRSPSLLDSNGKLILVAAVEKSK---L-N-VPKSLRLWSLQ 341 (453)
Q Consensus 282 -------------~~~i~~yD~~~~~W~~i~~--p~~~~~~~~~lv~~~g~L~vv~~~~~~~---~-~-~~~~i~vw~ld 341 (453)
...+.+||+.+++|+++.. .+|..+.....+..+++||++|+..... . . ....-++|.||
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d 282 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALD 282 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEE
Confidence 2468999999999998753 1333334455678899999999963210 0 0 01112789999
Q ss_pred cCCCCeEEEe
Q 045071 342 ACGTLWAEIE 351 (453)
Q Consensus 342 ~~~~~W~~v~ 351 (453)
..+++|+++.
T Consensus 283 ~~~~~W~~~~ 292 (341)
T PLN02153 283 TETLVWEKLG 292 (341)
T ss_pred cCccEEEecc
Confidence 9999999875
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.70 E-value=4.6e-15 Score=146.72 Aligned_cols=233 Identities=15% Similarity=0.116 Sum_probs=149.8
Q ss_pred eeeecCceEEEEecCCCCeeEEEEcCc--ccceecCCCCCC-CCCcceEEEEEcCCceEEEEEccCCCCc---ccccccc
Q 045071 163 PASSSGGLVCWVSDHAGAKTLILCNPV--TGSLSQLPPTLR-PRLFPSIGLKVTPTAVDVTVAGDDLISP---YAVKNLS 236 (453)
Q Consensus 163 ~~~s~~Gll~~~~~~~~~~~~~v~NP~--T~~w~~LP~~~~-~r~~~~~~~~~~~~~ykvv~~g~~~~~~---~~~~~~~ 236 (453)
..+..++.|++.++.. ...++++|+. +++|..+++++. +|..+.+ ...+ .+||++|+..... .......
T Consensus 33 ~~~~~~~~iyv~gG~~-~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~-v~~~---~~IYV~GG~~~~~~~~~~~~~~~ 107 (376)
T PRK14131 33 TGAIDNNTVYVGLGSA-GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVA-AFID---GKLYVFGGIGKTNSEGSPQVFDD 107 (376)
T ss_pred eEEEECCEEEEEeCCC-CCeEEEEECCCCCCCeEECCcCCCCCcccceE-EEEC---CEEEEEcCCCCCCCCCceeEccc
Confidence 4566788888876643 2457888875 578999999874 5654432 2233 3899999853210 0112356
Q ss_pred eeEEEcccCCCCCcccccCC-CCCcccCCCCCeEE-ECCEEEEEecCC--------------------------------
Q 045071 237 SESFHIDAGGFFSLWGTTSS-LPRLCSLESGRMVQ-VNGKFYCMNYSP-------------------------------- 282 (453)
Q Consensus 237 ~evyds~~~~~~~~W~~~~~-~p~~~~~~~~~~v~-~~G~lY~~~~~~-------------------------------- 282 (453)
+++||..+ ++|+.++. .|+. .....++. ++|+||++++..
T Consensus 108 v~~YD~~~----n~W~~~~~~~p~~--~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 108 VYKYDPKT----NSWQKLDTRSPVG--LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred EEEEeCCC----CEEEeCCCCCCCc--ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 78999999 99999875 3432 12223344 799999997631
Q ss_pred -------CEEEEEECCCCcEEEeecCCcc-ccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecC
Q 045071 283 -------FSVLAYDISANAWFNIQAPMRR-FLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMP 354 (453)
Q Consensus 283 -------~~i~~yD~~~~~W~~i~~p~~~-~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp 354 (453)
..+++||+.+++|+.+. ++|. ......++..+++||++|+...... ....+..+++++++++|+++..||
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~-~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~-~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAG-ESPFLGTAGSAVVIKGNKLWLINGEIKPGL-RTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECC-cCCCCCCCcceEEEECCEEEEEeeeECCCc-CChhheEEEecCCCcceeecCCCC
Confidence 46899999999999874 4443 3344567788999999999643221 122334455666788999999997
Q ss_pred HHHHHHhhcccCCCcEEEEeeCCEEEEEEcCC----------------------CeEEEEECCCCceEEcCCCCCcCC
Q 045071 355 QQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGS----------------------DKALLFDLCMKSWQWIPRCPYVQA 410 (453)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~----------------------~~v~~Yd~~~~~W~~l~~~p~~~~ 410 (453)
...... .. .......++..++.||+.+... ..+.+||+++++|+.++.+|..+.
T Consensus 260 ~~~~~~-~~-~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~ 335 (376)
T PRK14131 260 PAPGGS-SQ-EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA 335 (376)
T ss_pred CCCcCC-cC-CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc
Confidence 622100 00 0001122334678899876421 135689999999999988887654
No 16
>PHA03098 kelch-like protein; Provisional
Probab=99.69 E-value=1.9e-15 Score=156.80 Aligned_cols=201 Identities=17% Similarity=0.223 Sum_probs=148.5
Q ss_pred cceeeeCCCCCeEeccCCCCCCCCeeeeecCceEEEEecCCC---CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcC
Q 045071 138 EGYLFDPHELSWYRISFALVPSEFSPASSSGGLVCWVSDHAG---AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTP 214 (453)
Q Consensus 138 ~~~~fdp~~~~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~ 214 (453)
....||+.+++|..++....|+....+++.+|.|++.|+... ...+.+|||.+++|..+++++.+|..+.++. .+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~- 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VN- 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-EC-
Confidence 456899999999988744446655666777888888877532 3468899999999999999998887655433 22
Q ss_pred CceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC--------CEEE
Q 045071 215 TAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP--------FSVL 286 (453)
Q Consensus 215 ~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~--------~~i~ 286 (453)
.+||++||..... .....+++||+.+ ++|+.++++|... ....++.++|++|++++.. ..+.
T Consensus 390 --~~iYv~GG~~~~~--~~~~~v~~yd~~t----~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 459 (534)
T PHA03098 390 --NLIYVIGGISKND--ELLKTVECFSLNT----NKWSKGSPLPISH--YGGCAIYHDGKIYVIGGISYIDNIKVYNIVE 459 (534)
T ss_pred --CEEEEECCcCCCC--cccceEEEEeCCC----CeeeecCCCCccc--cCceEEEECCEEEEECCccCCCCCcccceEE
Confidence 3899998842211 1235679999999 9999998887532 2355788999999997631 3489
Q ss_pred EEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCH
Q 045071 287 AYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQ 355 (453)
Q Consensus 287 ~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~ 355 (453)
+||+.+++|+.+. +++..+....++..+|+||++||...... .-.|+.||..+++|+.+..+|+
T Consensus 460 ~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~----~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 460 SYNPVTNKWTELS-SLNFPRINASLCIFNNKIYVVGGDKYEYY----INEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EecCCCCceeeCC-CCCcccccceEEEECCEEEEEcCCcCCcc----cceeEEEeCCCCEEEecCCCcc
Confidence 9999999999874 34433445567778999999998653320 1267888998999999988876
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.64 E-value=8.5e-14 Score=137.71 Aligned_cols=242 Identities=15% Similarity=0.124 Sum_probs=154.3
Q ss_pred ceeeeCC--CCCeEecc-CCCCCCCCeeeeecCceEEEEecCCC---------CeeEEEEcCcccceecCCCC-CCCCCc
Q 045071 139 GYLFDPH--ELSWYRIS-FALVPSEFSPASSSGGLVCWVSDHAG---------AKTLILCNPVTGSLSQLPPT-LRPRLF 205 (453)
Q Consensus 139 ~~~fdp~--~~~w~~l~-l~~lp~~~~~~~s~~Gll~~~~~~~~---------~~~~~v~NP~T~~w~~LP~~-~~~r~~ 205 (453)
.+.||.. .++|..++ +|..++....+++.++.|++.++... ...+++|||.+++|..++++ +.++..
T Consensus 52 ~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~ 131 (376)
T PRK14131 52 WYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAG 131 (376)
T ss_pred EEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccc
Confidence 4567775 47899887 44445655566778898888876432 24688999999999999863 333332
Q ss_pred ceEEEE-EcCCceEEEEEccCCCCccc-------------------------------ccccceeEEEcccCCCCCcccc
Q 045071 206 PSIGLK-VTPTAVDVTVAGDDLISPYA-------------------------------VKNLSSESFHIDAGGFFSLWGT 253 (453)
Q Consensus 206 ~~~~~~-~~~~~ykvv~~g~~~~~~~~-------------------------------~~~~~~evyds~~~~~~~~W~~ 253 (453)
+. ++. .+ -+||++|+.....+. .....+++||+.+ +.|..
T Consensus 132 ~~-~~~~~~---~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t----~~W~~ 203 (376)
T PRK14131 132 HV-AVSLHN---GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPST----NQWKN 203 (376)
T ss_pred eE-EEEeeC---CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCC----CeeeE
Confidence 22 222 33 399999885321000 0124579999999 99999
Q ss_pred cCCCCCcccCCCCCeEEECCEEEEEecC------CC--EEEEEECCCCcEEEeecCCccccC--------CCceeeeCCe
Q 045071 254 TSSLPRLCSLESGRMVQVNGKFYCMNYS------PF--SVLAYDISANAWFNIQAPMRRFLR--------SPSLLDSNGK 317 (453)
Q Consensus 254 ~~~~p~~~~~~~~~~v~~~G~lY~~~~~------~~--~i~~yD~~~~~W~~i~~p~~~~~~--------~~~lv~~~g~ 317 (453)
++++|... ......+.++++||++++. .. ....||+++++|..+. ++|..+. ....+..+|+
T Consensus 204 ~~~~p~~~-~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~~~~~~~~~~~a~~~~~~ 281 (376)
T PRK14131 204 AGESPFLG-TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP-DLPPAPGGSSQEGVAGAFAGYSNGV 281 (376)
T ss_pred CCcCCCCC-CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC-CCCCCCcCCcCCccceEeceeECCE
Confidence 98887421 2224567789999999753 11 2345688899999873 4432211 1113568999
Q ss_pred EEEEEEEeccC---------CC----CCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc
Q 045071 318 LILVAAVEKSK---------LN----VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR 384 (453)
Q Consensus 318 L~vv~~~~~~~---------~~----~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~ 384 (453)
||++|+..... .. ......+..+|.++++|+++..||... ....++..+|.||+.+.
T Consensus 282 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r----------~~~~av~~~~~iyv~GG 351 (376)
T PRK14131 282 LLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL----------AYGVSVSWNNGVLLIGG 351 (376)
T ss_pred EEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc----------cceEEEEeCCEEEEEcC
Confidence 99999854210 00 000112334566688999999998732 12245667899999875
Q ss_pred C------CCeEEEEECCCCceE
Q 045071 385 G------SDKALLFDLCMKSWQ 400 (453)
Q Consensus 385 ~------~~~v~~Yd~~~~~W~ 400 (453)
. ...+.+|+..++.+.
T Consensus 352 ~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 352 ETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred CCCCCcEeeeEEEEEEcCCEEE
Confidence 3 247888988887775
No 18
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.63 E-value=7.1e-14 Score=137.01 Aligned_cols=225 Identities=16% Similarity=0.168 Sum_probs=143.1
Q ss_pred ceeeeC--CCCCeEecc-CCCCCCCCeeeeecCceEEEEecCCC---------CeeEEEEcCcccceecCCC-CCCCCCc
Q 045071 139 GYLFDP--HELSWYRIS-FALVPSEFSPASSSGGLVCWVSDHAG---------AKTLILCNPVTGSLSQLPP-TLRPRLF 205 (453)
Q Consensus 139 ~~~fdp--~~~~w~~l~-l~~lp~~~~~~~s~~Gll~~~~~~~~---------~~~~~v~NP~T~~w~~LP~-~~~~r~~ 205 (453)
.+.||+ ..++|..++ +|..++....+++.+|.|++.++... ...+++|||.+++|..++. ++..+..
T Consensus 31 ~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~ 110 (346)
T TIGR03547 31 WYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLG 110 (346)
T ss_pred eEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccc
Confidence 456775 568899987 44346655667788899998887421 2468899999999999974 3433332
Q ss_pred ceEEE-EEcCCceEEEEEccCCCCccc-------------------------------ccccceeEEEcccCCCCCcccc
Q 045071 206 PSIGL-KVTPTAVDVTVAGDDLISPYA-------------------------------VKNLSSESFHIDAGGFFSLWGT 253 (453)
Q Consensus 206 ~~~~~-~~~~~~ykvv~~g~~~~~~~~-------------------------------~~~~~~evyds~~~~~~~~W~~ 253 (453)
+. ++ ..+ -|||++|+.....+. .....+++||+.+ ++|+.
T Consensus 111 ~~-~~~~~~---g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t----~~W~~ 182 (346)
T TIGR03547 111 AS-GFSLHN---GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPST----NQWRN 182 (346)
T ss_pred ee-EEEEeC---CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCC----CceeE
Confidence 22 22 233 399999885321000 0124689999999 99999
Q ss_pred cCCCCCcccCCCCCeEEECCEEEEEecCC------CEEEEEE--CCCCcEEEeecCCcccc-------CCCceeeeCCeE
Q 045071 254 TSSLPRLCSLESGRMVQVNGKFYCMNYSP------FSVLAYD--ISANAWFNIQAPMRRFL-------RSPSLLDSNGKL 318 (453)
Q Consensus 254 ~~~~p~~~~~~~~~~v~~~G~lY~~~~~~------~~i~~yD--~~~~~W~~i~~p~~~~~-------~~~~lv~~~g~L 318 (453)
+++||... ......+.++|+||++++.. ..+..|| +++++|+.+ .+++..+ ..+..+..+|+|
T Consensus 183 ~~~~p~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~-~~m~~~r~~~~~~~~~~~a~~~~~~I 260 (346)
T TIGR03547 183 LGENPFLG-TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKL-PPLPPPKSSSQEGLAGAFAGISNGVL 260 (346)
T ss_pred CccCCCCc-CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeec-CCCCCCCCCccccccEEeeeEECCEE
Confidence 99887421 12244678899999997531 2345555 567799887 3443321 112356789999
Q ss_pred EEEEEEeccC---------------CCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEE
Q 045071 319 ILVAAVEKSK---------------LNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVI 383 (453)
Q Consensus 319 ~vv~~~~~~~---------------~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~ 383 (453)
|++|+..... ......+++| +.++++|+.+..||... ....++..+|.||+.+
T Consensus 261 yv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y--d~~~~~W~~~~~lp~~~----------~~~~~~~~~~~iyv~G 328 (346)
T TIGR03547 261 LVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY--ALDNGKWSKVGKLPQGL----------AYGVSVSWNNGVLLIG 328 (346)
T ss_pred EEeecCCCCCchhhhhcCCccccCCCCceeEeeEE--EecCCcccccCCCCCCc----------eeeEEEEcCCEEEEEe
Confidence 9999864210 0001234555 44578999999998632 1223455799999987
Q ss_pred cC
Q 045071 384 RG 385 (453)
Q Consensus 384 ~~ 385 (453)
..
T Consensus 329 G~ 330 (346)
T TIGR03547 329 GE 330 (346)
T ss_pred cc
Confidence 53
No 19
>PLN02193 nitrile-specifier protein
Probab=99.62 E-value=8e-14 Score=141.60 Aligned_cols=206 Identities=16% Similarity=0.180 Sum_probs=139.8
Q ss_pred cceeeeCCCCCeEeccCC-CCCC---CCeeeeecCceEEEEecCCC---CeeEEEEcCcccceecCCCC---CCCCCcce
Q 045071 138 EGYLFDPHELSWYRISFA-LVPS---EFSPASSSGGLVCWVSDHAG---AKTLILCNPVTGSLSQLPPT---LRPRLFPS 207 (453)
Q Consensus 138 ~~~~fdp~~~~w~~l~l~-~lp~---~~~~~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w~~LP~~---~~~r~~~~ 207 (453)
..+.||+.+++|..++.. ..|+ ....+++.++.|++.++... .+.++++||.+++|..++++ +.+|..+.
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~ 273 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS 273 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence 356899999999987632 2332 23345667888888876432 35789999999999999887 56676554
Q ss_pred EEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCC-cccCCCCCeEEECCEEEEEecC----C
Q 045071 208 IGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR-LCSLESGRMVQVNGKFYCMNYS----P 282 (453)
Q Consensus 208 ~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~-~~~~~~~~~v~~~G~lY~~~~~----~ 282 (453)
+.. .+ .+||++|+..... .....++||..+ ++|+.++.... ........+++++|++|++.+. .
T Consensus 274 ~~~-~~---~~iYv~GG~~~~~---~~~~~~~yd~~t----~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~ 342 (470)
T PLN02193 274 MAA-DE---ENVYVFGGVSATA---RLKTLDSYNIVD----KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEV 342 (470)
T ss_pred EEE-EC---CEEEEECCCCCCC---CcceEEEEECCC----CEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCcc
Confidence 322 22 3899998853221 234578999999 99998754211 0112224567789999998653 2
Q ss_pred CEEEEEECCCCcEEEeec--CCccccCCCceeeeCCeEEEEEEEeccC---CCCCCcE--EEEEeecCCCCeEEEeecC
Q 045071 283 FSVLAYDISANAWFNIQA--PMRRFLRSPSLLDSNGKLILVAAVEKSK---LNVPKSL--RLWSLQACGTLWAEIERMP 354 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~i~~--p~~~~~~~~~lv~~~g~L~vv~~~~~~~---~~~~~~i--~vw~ld~~~~~W~~v~~mp 354 (453)
..+.+||+.+++|+.+.. +.|..+..+..+..+++||++|+..... ......+ .+|.||..+++|+++..++
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 579999999999998843 1233344456778899999999964311 0000111 5899999999999887664
No 20
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.62 E-value=9.7e-14 Score=134.67 Aligned_cols=216 Identities=13% Similarity=0.117 Sum_probs=140.4
Q ss_pred CeEeccCCCCCCCCeeeeecCceEEEEecCCC---CeeEEEEcCcccce----ecCCCCCCCCCcceEEEEEcCCceEEE
Q 045071 148 SWYRISFALVPSEFSPASSSGGLVCWVSDHAG---AKTLILCNPVTGSL----SQLPPTLRPRLFPSIGLKVTPTAVDVT 220 (453)
Q Consensus 148 ~w~~l~l~~lp~~~~~~~s~~Gll~~~~~~~~---~~~~~v~NP~T~~w----~~LP~~~~~r~~~~~~~~~~~~~ykvv 220 (453)
+|..++....|+.....++.++.|++.++... ...++.+|+.+++| ..+|+++.+|..+.+++. + .+||
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~---~~iY 127 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-D---GTLY 127 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-C---CEEE
Confidence 68887632344543444555677777665322 35788999999987 789999888765544333 3 3899
Q ss_pred EEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC----CEEEEEECCCCcEE
Q 045071 221 VAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP----FSVLAYDISANAWF 296 (453)
Q Consensus 221 ~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~----~~i~~yD~~~~~W~ 296 (453)
++|+..... ....+++||+.+ ++|+.++++|... .....++.++++||++++.. ..+++||+.+++|+
T Consensus 128 v~GG~~~~~---~~~~v~~yd~~~----~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 128 VGGGNRNGK---PSNKSYLFNLET----QEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred EEeCcCCCc---cCceEEEEcCCC----CCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 998852111 235679999999 9999998776421 22234567999999997642 34789999999999
Q ss_pred EeecC----CccccC-CCceeeeCCeEEEEEEEeccCC-------CC---------------------CCcEEEEEeecC
Q 045071 297 NIQAP----MRRFLR-SPSLLDSNGKLILVAAVEKSKL-------NV---------------------PKSLRLWSLQAC 343 (453)
Q Consensus 297 ~i~~p----~~~~~~-~~~lv~~~g~L~vv~~~~~~~~-------~~---------------------~~~i~vw~ld~~ 343 (453)
.+... .|.... ...++..+++||++|+...... .. .-.=.|+.||..
T Consensus 200 ~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 279 (323)
T TIGR03548 200 KVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVR 279 (323)
T ss_pred ECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECC
Confidence 87431 222221 2234456899999998643100 00 000157888988
Q ss_pred CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc
Q 045071 344 GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR 384 (453)
Q Consensus 344 ~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~ 384 (453)
+++|+.+..||.. .+.....+..++.||+.+.
T Consensus 280 ~~~W~~~~~~p~~---------~r~~~~~~~~~~~iyv~GG 311 (323)
T TIGR03548 280 TGKWKSIGNSPFF---------ARCGAALLLTGNNIFSING 311 (323)
T ss_pred CCeeeEccccccc---------ccCchheEEECCEEEEEec
Confidence 9999999888631 1123334667899999865
No 21
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.07 E-value=1.1e-08 Score=91.16 Aligned_cols=227 Identities=14% Similarity=0.135 Sum_probs=136.7
Q ss_pred ceeeeCCCCCeEeccC-----------CCCC--CCCeeeeecCceEEEEecCC----CCeeEEEEcCcccceecCCC---
Q 045071 139 GYLFDPHELSWYRISF-----------ALVP--SEFSPASSSGGLVCWVSDHA----GAKTLILCNPVTGSLSQLPP--- 198 (453)
Q Consensus 139 ~~~fdp~~~~w~~l~l-----------~~lp--~~~~~~~s~~Gll~~~~~~~----~~~~~~v~NP~T~~w~~LP~--- 198 (453)
..+++..+-+|..+|. |..| +--+.+..-.+.+++.++.+ ..+.++-+||.|+.|.+.--
T Consensus 46 VH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~ 125 (392)
T KOG4693|consen 46 VHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGF 125 (392)
T ss_pred eEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeee
Confidence 3456666667877763 1122 11233444556666665432 24568899999999986422
Q ss_pred CCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccC---CCCCcccCCCCCeEEECCEE
Q 045071 199 TLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTS---SLPRLCSLESGRMVQVNGKF 275 (453)
Q Consensus 199 ~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~---~~p~~~~~~~~~~v~~~G~l 275 (453)
.|..|--+. +.+.. ...++.|+...+... ....+.++|..+ .+|+.+. ..|+.+.+ +.++++++.+
T Consensus 126 vPgaRDGHs-AcV~g---n~MyiFGGye~~a~~-FS~d~h~ld~~T----mtWr~~~Tkg~PprwRDF--H~a~~~~~~M 194 (392)
T KOG4693|consen 126 VPGARDGHS-ACVWG---NQMYIFGGYEEDAQR-FSQDTHVLDFAT----MTWREMHTKGDPPRWRDF--HTASVIDGMM 194 (392)
T ss_pred cCCccCCce-eeEEC---cEEEEecChHHHHHh-hhccceeEeccc----eeeeehhccCCCchhhhh--hhhhhccceE
Confidence 122232222 22322 256667764222111 123345667777 8999874 34443333 5578889999
Q ss_pred EEEecCC--------------CEEEEEECCCCcEEEeec-C-CccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEE
Q 045071 276 YCMNYSP--------------FSVLAYDISANAWFNIQA-P-MRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWS 339 (453)
Q Consensus 276 Y~~~~~~--------------~~i~~yD~~~~~W~~i~~-p-~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ 339 (453)
|+.++.. +.|+++|++++.|...+. + .|..++.+.....+|++|++|+.... ++ ..--++|.
T Consensus 195 YiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~-ln-~HfndLy~ 272 (392)
T KOG4693|consen 195 YIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGT-LN-VHFNDLYC 272 (392)
T ss_pred EEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchh-hh-hhhcceee
Confidence 9986531 479999999999987522 1 24566777888999999999987542 10 11227999
Q ss_pred eecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC
Q 045071 340 LQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG 385 (453)
Q Consensus 340 ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~ 385 (453)
+|+.+..|+.+..-... .+.++.-.|+..|++||+.+..
T Consensus 273 FdP~t~~W~~I~~~Gk~-------P~aRRRqC~~v~g~kv~LFGGT 311 (392)
T KOG4693|consen 273 FDPKTSMWSVISVRGKY-------PSARRRQCSVVSGGKVYLFGGT 311 (392)
T ss_pred cccccchheeeeccCCC-------CCcccceeEEEECCEEEEecCC
Confidence 99999999987543210 0112222345568999998654
No 22
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.00 E-value=1.5e-08 Score=90.35 Aligned_cols=205 Identities=10% Similarity=0.133 Sum_probs=133.7
Q ss_pred CeeEEEEcCcccceecCCCCCC-------------CCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCC
Q 045071 180 AKTLILCNPVTGSLSQLPPTLR-------------PRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGG 246 (453)
Q Consensus 180 ~~~~~v~NP~T~~w~~LP~~~~-------------~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~ 246 (453)
.-.+.++|..+-+|.++|+-.. .|.-+.+ +.+. -|+++-|++...+. .-.....||+++
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtv-V~y~---d~~yvWGGRND~eg--aCN~Ly~fDp~t-- 114 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTV-VEYQ---DKAYVWGGRNDDEG--ACNLLYEFDPET-- 114 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccchhhcCceE-EEEc---ceEEEEcCccCccc--ccceeeeecccc--
Confidence 3478999999999999998211 1211221 2222 38888888643332 123457899999
Q ss_pred CCCcccccC---CCCCcccCCCCCeEEECCEEEEEecC-------CCEEEEEECCCCcEEEeec--CCccccCCCceeee
Q 045071 247 FFSLWGTTS---SLPRLCSLESGRMVQVNGKFYCMNYS-------PFSVLAYDISANAWFNIQA--PMRRFLRSPSLLDS 314 (453)
Q Consensus 247 ~~~~W~~~~---~~p~~~~~~~~~~v~~~G~lY~~~~~-------~~~i~~yD~~~~~W~~i~~--p~~~~~~~~~lv~~ 314 (453)
+.|.+.. .+|. ..+.+.+++.++.+|+.++. ...+.++|+++.+|+.+.. .+|..+..+..++.
T Consensus 115 --~~W~~p~v~G~vPg--aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~ 190 (392)
T KOG4693|consen 115 --NVWKKPEVEGFVPG--ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI 190 (392)
T ss_pred --ccccccceeeecCC--ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhc
Confidence 9998753 3554 23446678899999998753 2478999999999999843 23444444555678
Q ss_pred CCeEEEEEEEeccC--C---CCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc-C---
Q 045071 315 NGKLILVAAVEKSK--L---NVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR-G--- 385 (453)
Q Consensus 315 ~g~L~vv~~~~~~~--~---~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~-~--- 385 (453)
++..|++|+..+.. . +....-+|-.||..++.|.....-+ + ...++++-..++.++.+|+.+. .
T Consensus 191 ~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~--~-----~P~GRRSHS~fvYng~~Y~FGGYng~l 263 (392)
T KOG4693|consen 191 DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENT--M-----KPGGRRSHSTFVYNGKMYMFGGYNGTL 263 (392)
T ss_pred cceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCC--c-----CCCcccccceEEEcceEEEecccchhh
Confidence 89999999865531 1 1112235666777789998642211 0 0113344456677888888753 1
Q ss_pred ---CCeEEEEECCCCceEEcC
Q 045071 386 ---SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 386 ---~~~v~~Yd~~~~~W~~l~ 403 (453)
.+.+..||+.+..|..+.
T Consensus 264 n~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 264 NVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred hhhhcceeecccccchheeee
Confidence 578999999999999873
No 23
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.95 E-value=1.1e-08 Score=85.17 Aligned_cols=85 Identities=24% Similarity=0.493 Sum_probs=65.3
Q ss_pred eEEECCEEEEEecC----CCEEEEEECCCCcEEEeecC--CccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEee
Q 045071 268 MVQVNGKFYCMNYS----PFSVLAYDISANAWFNIQAP--MRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQ 341 (453)
Q Consensus 268 ~v~~~G~lY~~~~~----~~~i~~yD~~~~~W~~i~~p--~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld 341 (453)
++++||.+||+... ...|++||+++++|+.++.| .........|++++|+|.++....... ...++||.|+
T Consensus 1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~---~~~~~iWvLe 77 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE---PDSIDIWVLE 77 (129)
T ss_pred CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC---cceEEEEEee
Confidence 37899999999764 46899999999999999887 222334568999999999988654321 3468999998
Q ss_pred cC-CCCeEEEee-cCH
Q 045071 342 AC-GTLWAEIER-MPQ 355 (453)
Q Consensus 342 ~~-~~~W~~v~~-mp~ 355 (453)
+. +++|++... +|.
T Consensus 78 D~~k~~Wsk~~~~lp~ 93 (129)
T PF08268_consen 78 DYEKQEWSKKHIVLPP 93 (129)
T ss_pred ccccceEEEEEEECCh
Confidence 65 678998755 554
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.83 E-value=1.5e-07 Score=88.90 Aligned_cols=208 Identities=13% Similarity=0.177 Sum_probs=126.6
Q ss_pred eeEEEEcCcccceecCCC--CCCCCCcceEEEEEcCCceEEEEEccCCCCcccc---cccceeEEEcccCCCCCcccccC
Q 045071 181 KTLILCNPVTGSLSQLPP--TLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAV---KNLSSESFHIDAGGFFSLWGTTS 255 (453)
Q Consensus 181 ~~~~v~NP~T~~w~~LP~--~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~---~~~~~evyds~~~~~~~~W~~~~ 255 (453)
+.+++||-.+++|+.+-. .|.||.-+.+ ++-+.. .+++.|+...+|.+. .......|+..+ ++|+.+.
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~--va~~s~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~t----rkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQA--VAVPSN-ILWLFGGEFASPNQEQFHHYKDLWLFDLKT----RKWEQLE 170 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCcccee--EEeccC-eEEEeccccCCcchhhhhhhhheeeeeecc----chheeec
Confidence 368899999999998743 4455654432 222222 566677765555221 122356788899 9999875
Q ss_pred CCCCcccCCCCCeEEECCEEEEEecC---------CCEEEEEECCCCcEEEeecCC--ccccCCCceeee-CCeEEEEEE
Q 045071 256 SLPRLCSLESGRMVQVNGKFYCMNYS---------PFSVLAYDISANAWFNIQAPM--RRFLRSPSLLDS-NGKLILVAA 323 (453)
Q Consensus 256 ~~p~~~~~~~~~~v~~~G~lY~~~~~---------~~~i~~yD~~~~~W~~i~~p~--~~~~~~~~lv~~-~g~L~vv~~ 323 (453)
.-........+.+|..+..|...++- -+.|.+||+++-+|.++..+- |..+..+++.+. +|.++|.|+
T Consensus 171 ~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 171 FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 33222233446677776666655421 157999999999999985533 444555667666 999999999
Q ss_pred EeccCC-----CCCCcEEEEEeecCC-----CCeEEEeecCHHHHHHhhcccCCCcEEEE-eeCCEEEEEEc-----C--
Q 045071 324 VEKSKL-----NVPKSLRLWSLQACG-----TLWAEIERMPQQLYAQFAEIEAGNGFDTI-GHGEFIVIVIR-----G-- 385 (453)
Q Consensus 324 ~~~~~~-----~~~~~i~vw~ld~~~-----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~-~~g~~I~l~~~-----~-- 385 (453)
..+... .....-+.|.|++.. ..|.++..... ....+.+|.|. +-++.-++.+. .
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~-------kPspRsgfsv~va~n~kal~FGGV~D~eeee 323 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGV-------KPSPRSGFSVAVAKNHKALFFGGVCDLEEEE 323 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCC-------CCCCCCceeEEEecCCceEEecceecccccc
Confidence 765321 011223689998864 45667654321 01123456543 33333333221 0
Q ss_pred -------CCeEEEEECCCCceEEc
Q 045071 386 -------SDKALLFDLCMKSWQWI 402 (453)
Q Consensus 386 -------~~~v~~Yd~~~~~W~~l 402 (453)
.+.++.||+..++|...
T Consensus 324 Esl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 324 ESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred hhhhhhhhhhhhheecccchhhHh
Confidence 46799999999999875
No 25
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.81 E-value=1.9e-09 Score=72.36 Aligned_cols=43 Identities=30% Similarity=0.635 Sum_probs=37.1
Q ss_pred cCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchhh
Q 045071 51 WSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLEL 93 (453)
Q Consensus 51 w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~ 93 (453)
|..||+|++.+||+.|+..++.+++.|||+|+.++.++.+.+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 6899999999999999999999999999999999988765443
No 26
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.77 E-value=7.9e-07 Score=90.55 Aligned_cols=205 Identities=12% Similarity=0.106 Sum_probs=133.9
Q ss_pred eEEEEcCcccceecCCCCC---CCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCC
Q 045071 182 TLILCNPVTGSLSQLPPTL---RPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLP 258 (453)
Q Consensus 182 ~~~v~NP~T~~w~~LP~~~---~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p 258 (453)
+++++|--++.|.....-. .+|..+.+... + -+++++|+..... . .......||..+ +.|+......
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~-~---~~l~lfGG~~~~~-~-~~~~l~~~d~~t----~~W~~l~~~~ 158 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV-G---DKLYLFGGTDKKY-R-NLNELHSLDLST----RTWSLLSPTG 158 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEE-C---CeEEEEccccCCC-C-ChhheEeccCCC----CcEEEecCcC
Confidence 5999999999998775432 23333322222 2 3888888864211 1 234567888888 9999865322
Q ss_pred C-cccCCCCCeEEECCEEEEEecC------CCEEEEEECCCCcEEEeec--CCccccCCCceeeeCCeEEEEEEEeccCC
Q 045071 259 R-LCSLESGRMVQVNGKFYCMNYS------PFSVLAYDISANAWFNIQA--PMRRFLRSPSLLDSNGKLILVAAVEKSKL 329 (453)
Q Consensus 259 ~-~~~~~~~~~v~~~G~lY~~~~~------~~~i~~yD~~~~~W~~i~~--p~~~~~~~~~lv~~~g~L~vv~~~~~~~~ 329 (453)
. ......+.++.++.++|+.++. .+.+++||+++.+|.++.. +.|..+..+.++..+++++|+++.....
T Consensus 159 ~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~- 237 (482)
T KOG0379|consen 159 DPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGD- 237 (482)
T ss_pred CCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCC-
Confidence 1 1133446678888999998642 2579999999999999854 3444456778899999999999865211
Q ss_pred CCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-------CCeEEEEECCCCceEEc
Q 045071 330 NVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-------SDKALLFDLCMKSWQWI 402 (453)
Q Consensus 330 ~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-------~~~v~~Yd~~~~~W~~l 402 (453)
..-=++|.||..+.+|+++..... .. ..+.....+..++.+++.+.. ...++.||+++..|.++
T Consensus 238 --~~l~D~~~ldl~~~~W~~~~~~g~-----~p--~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~ 308 (482)
T KOG0379|consen 238 --VYLNDVHILDLSTWEWKLLPTGGD-----LP--SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKV 308 (482)
T ss_pred --ceecceEeeecccceeeeccccCC-----CC--CCcceeeeEEECCEEEEEcCCcccccccccccccccccccceeee
Confidence 111278999988888986543321 00 011233334567778776543 34678999999999998
Q ss_pred CCCC
Q 045071 403 PRCP 406 (453)
Q Consensus 403 ~~~p 406 (453)
....
T Consensus 309 ~~~~ 312 (482)
T KOG0379|consen 309 ESVG 312 (482)
T ss_pred eccc
Confidence 6554
No 27
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=98.64 E-value=2.8e-06 Score=86.52 Aligned_cols=172 Identities=14% Similarity=0.210 Sum_probs=114.4
Q ss_pred eEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCC-cccCCCCCeEEECCEEEEEecCC------CEEEEEE
Q 045071 217 VDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR-LCSLESGRMVQVNGKFYCMNYSP------FSVLAYD 289 (453)
Q Consensus 217 ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~-~~~~~~~~~v~~~G~lY~~~~~~------~~i~~yD 289 (453)
-++++.|+....... ......++|..+ ..|.....-.. .....++..+.++.+||+.++.. ..|..||
T Consensus 71 ~~~~vfGG~~~~~~~-~~~dl~~~d~~~----~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d 145 (482)
T KOG0379|consen 71 NKLYVFGGYGSGDRL-TDLDLYVLDLES----QLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLD 145 (482)
T ss_pred CEEEEECCCCCCCcc-ccceeEEeecCC----cccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEecc
Confidence 488888876433211 112367778877 88987542111 11233456788899999997653 3899999
Q ss_pred CCCCcEEEeec--CCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCC
Q 045071 290 ISANAWFNIQA--PMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAG 367 (453)
Q Consensus 290 ~~~~~W~~i~~--p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~ 367 (453)
+.+.+|..+.. ..|..+..+.++..+.+|+++|+..... ...-++|.||..+.+|+++....+.- ..+
T Consensus 146 ~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~---~~~ndl~i~d~~~~~W~~~~~~g~~P-------~pR 215 (482)
T KOG0379|consen 146 LSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTG---DSLNDLHIYDLETSTWSELDTQGEAP-------SPR 215 (482)
T ss_pred CCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcc---cceeeeeeeccccccceecccCCCCC-------CCC
Confidence 99999988743 1234456667888889999999976542 12348899999889999986654311 112
Q ss_pred CcEEEEeeCCEEEEEEcC------CCeEEEEECCCCceEEcC
Q 045071 368 NGFDTIGHGEFIVIVIRG------SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 368 ~~~~~~~~g~~I~l~~~~------~~~v~~Yd~~~~~W~~l~ 403 (453)
..=.++..++.+++.... ...+..+|+.+.+|..++
T Consensus 216 ~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~ 257 (482)
T KOG0379|consen 216 YGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP 257 (482)
T ss_pred CCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc
Confidence 233455567777765432 468999999998888665
No 28
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.62 E-value=6.7e-09 Score=70.10 Aligned_cols=45 Identities=31% Similarity=0.564 Sum_probs=37.7
Q ss_pred ccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchhhh
Q 045071 50 IWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLELY 94 (453)
Q Consensus 50 ~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~~ 94 (453)
.|.+||+|++.+|+.+|+..++++++.|||+|++++.+..+...+
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 478899999999999999999999999999999999988766543
No 29
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.50 E-value=4.9e-08 Score=63.34 Aligned_cols=39 Identities=38% Similarity=0.770 Sum_probs=36.4
Q ss_pred ChHHHHHHHHhcCChhhhhhhhhccccccccccCccchh
Q 045071 54 LPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLE 92 (453)
Q Consensus 54 LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~ 92 (453)
||+|++.+|+.+|+..++.+++.|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999998877654
No 30
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=98.44 E-value=1.7e-05 Score=75.36 Aligned_cols=147 Identities=15% Similarity=0.202 Sum_probs=92.8
Q ss_pred CCCCCcceEEEEEcCCceEEEEEccCCCCcccc-cccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEEC-CEEEE
Q 045071 200 LRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAV-KNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVN-GKFYC 277 (453)
Q Consensus 200 ~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~-~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~-G~lY~ 277 (453)
|.+|.++. +.+.+..-.+++.|+........ .......|+.++ +.|+.+.+.....+..++.+|++. |.+|+
T Consensus 64 PspRsn~s--l~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~----~eWkk~~spn~P~pRsshq~va~~s~~l~~ 137 (521)
T KOG1230|consen 64 PSPRSNPS--LFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKK----NEWKKVVSPNAPPPRSSHQAVAVPSNILWL 137 (521)
T ss_pred CCCCCCcc--eeeccCcceeEEecceeecceeEEEeeeeeEEeccc----cceeEeccCCCcCCCccceeEEeccCeEEE
Confidence 44565543 44455434677777753221100 112346677888 999987532111133445666665 77777
Q ss_pred EecC---C--------CEEEEEECCCCcEEEeecCC-ccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCC
Q 045071 278 MNYS---P--------FSVLAYDISANAWFNIQAPM-RRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGT 345 (453)
Q Consensus 278 ~~~~---~--------~~i~~yD~~~~~W~~i~~p~-~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~ 345 (453)
.++. + ..++.||+.+++|+.+..+- |..+..++++++..+|+++|++-+..-....-=+||.++.++-
T Consensus 138 fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdty 217 (521)
T KOG1230|consen 138 FGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTY 217 (521)
T ss_pred eccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccce
Confidence 6542 1 36899999999999996642 4456678999999999999998654100001126899998899
Q ss_pred CeEEEee
Q 045071 346 LWAEIER 352 (453)
Q Consensus 346 ~W~~v~~ 352 (453)
.|.++..
T Consensus 218 kW~Klep 224 (521)
T KOG1230|consen 218 KWSKLEP 224 (521)
T ss_pred eeeeccC
Confidence 9999765
No 31
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.41 E-value=5.5e-06 Score=80.46 Aligned_cols=232 Identities=16% Similarity=0.259 Sum_probs=131.2
Q ss_pred CCCCCeEeccC--CCCC--C-CCeeeeecCceEEEEe-cCCC-CeeEEEEcCcccceecCCCCC--CCCCcceEEEEEcC
Q 045071 144 PHELSWYRISF--ALVP--S-EFSPASSSGGLVCWVS-DHAG-AKTLILCNPVTGSLSQLPPTL--RPRLFPSIGLKVTP 214 (453)
Q Consensus 144 p~~~~w~~l~l--~~lp--~-~~~~~~s~~Gll~~~~-~~~~-~~~~~v~NP~T~~w~~LP~~~--~~r~~~~~~~~~~~ 214 (453)
+..-+|+++.- ...| + +...++-. .|+++.+ +..+ ..+++|||-.|++|.. |... .|-...+.|++.+
T Consensus 14 ~~~~rWrrV~~~tGPvPrpRHGHRAVaik-ELiviFGGGNEGiiDELHvYNTatnqWf~-PavrGDiPpgcAA~Gfvcd- 90 (830)
T KOG4152|consen 14 KNVVRWRRVQQSTGPVPRPRHGHRAVAIK-ELIVIFGGGNEGIIDELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCD- 90 (830)
T ss_pred hcccceEEEecccCCCCCccccchheeee-eeEEEecCCcccchhhhhhhccccceeec-chhcCCCCCchhhcceEec-
Confidence 34457887652 1222 3 33444444 5555444 3332 3589999999999963 3321 1222334566666
Q ss_pred CceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCC-----cccCCCCCeEEECCEEEEEecC--------
Q 045071 215 TAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR-----LCSLESGRMVQVNGKFYCMNYS-------- 281 (453)
Q Consensus 215 ~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~-----~~~~~~~~~v~~~G~lY~~~~~-------- 281 (453)
+-||+++|+.. +|+ .++.+.|...... -.|+.+.+-+. .+..-.+.....+++.|+.++-
T Consensus 91 -GtrilvFGGMv--EYG--kYsNdLYELQasR--WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpk 163 (830)
T KOG4152|consen 91 -GTRILVFGGMV--EYG--KYSNDLYELQASR--WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPK 163 (830)
T ss_pred -CceEEEEccEe--eec--cccchHHHhhhhh--hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcc
Confidence 35999998842 222 3456778776622 45666543211 1222224567788999987531
Q ss_pred ------CCEEEEEECCCC----cEEEeec--CCccccCCCceeee------CCeEEEEEEEeccCCCCCCcEEEEEeecC
Q 045071 282 ------PFSVLAYDISAN----AWFNIQA--PMRRFLRSPSLLDS------NGKLILVAAVEKSKLNVPKSLRLWSLQAC 343 (453)
Q Consensus 282 ------~~~i~~yD~~~~----~W~~i~~--p~~~~~~~~~lv~~------~g~L~vv~~~~~~~~~~~~~i~vw~ld~~ 343 (453)
.+.+...++.-+ .|..... +.|..+..+..|.+ ..++++.|+....+++ ++|.||.+
T Consensus 164 nNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLg-----DLW~Ldl~ 238 (830)
T KOG4152|consen 164 NNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLG-----DLWTLDLD 238 (830)
T ss_pred cccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccccccc-----ceeEEecc
Confidence 124555555532 4754311 22222333333321 3578888887766554 89999999
Q ss_pred CCCeEEE-----eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-------------------CCeEEEEECCCCce
Q 045071 344 GTLWAEI-----ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-------------------SDKALLFDLCMKSW 399 (453)
Q Consensus 344 ~~~W~~v-----~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-------------------~~~v~~Yd~~~~~W 399 (453)
+..|.+. ..||..+. .....||.+|+.+.. ...+.++|+.+.+|
T Consensus 239 Tl~W~kp~~~G~~PlPRSLH------------sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W 306 (830)
T KOG4152|consen 239 TLTWNKPSLSGVAPLPRSLH------------SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAW 306 (830)
T ss_pred eeecccccccCCCCCCcccc------------cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchhe
Confidence 9999873 34554221 123356777765421 24678899999999
Q ss_pred EEc
Q 045071 400 QWI 402 (453)
Q Consensus 400 ~~l 402 (453)
+-|
T Consensus 307 ~tl 309 (830)
T KOG4152|consen 307 ETL 309 (830)
T ss_pred eee
Confidence 875
No 32
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.30 E-value=1.2e-05 Score=69.73 Aligned_cols=82 Identities=18% Similarity=0.352 Sum_probs=57.1
Q ss_pred eEEECCEEEEEecCCC-----EEEEEECCCCcE-EEeecCCccc--cCCCce-eeeCCeEEEEEEEeccCCCCCCcEEEE
Q 045071 268 MVQVNGKFYCMNYSPF-----SVLAYDISANAW-FNIQAPMRRF--LRSPSL-LDSNGKLILVAAVEKSKLNVPKSLRLW 338 (453)
Q Consensus 268 ~v~~~G~lY~~~~~~~-----~i~~yD~~~~~W-~~i~~p~~~~--~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw 338 (453)
+|++||.+||+..... .|++||+.++++ +.++.|.... .....| +..+++|+++..... ...++||
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~-----~~~~~IW 75 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDE-----TSKIEIW 75 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccC-----CccEEEE
Confidence 4899999999976431 699999999999 7776654332 112344 334789998864221 2358999
Q ss_pred EeecC---CCCeEEEeecC
Q 045071 339 SLQAC---GTLWAEIERMP 354 (453)
Q Consensus 339 ~ld~~---~~~W~~v~~mp 354 (453)
.|++. ..+|+++-+++
T Consensus 76 vm~~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 76 VMKKYGYGKESWTKLFTID 94 (164)
T ss_pred EEeeeccCcceEEEEEEEe
Confidence 99952 57899976654
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.10 E-value=5.1e-05 Score=70.43 Aligned_cols=43 Identities=21% Similarity=0.509 Sum_probs=38.9
Q ss_pred cCCCh----HHHHHHHHhcCChhhhhhhhhccccccccccCccchhh
Q 045071 51 WSKLP----QRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLEL 93 (453)
Q Consensus 51 w~~LP----~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~~ 93 (453)
...|| +++.++||+.|...+|+.+..|||+|++++.++...+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 56799 99999999999999999999999999999998876543
No 34
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.87 E-value=0.00065 Score=63.93 Aligned_cols=164 Identities=16% Similarity=0.200 Sum_probs=98.5
Q ss_pred eeEEEEcCc--ccceecCCCCCCC-CCcceEEEEEcCCceEEEEEccCCCCc--ccccccceeEEEcccCCCCCcccccC
Q 045071 181 KTLILCNPV--TGSLSQLPPTLRP-RLFPSIGLKVTPTAVDVTVAGDDLISP--YAVKNLSSESFHIDAGGFFSLWGTTS 255 (453)
Q Consensus 181 ~~~~v~NP~--T~~w~~LP~~~~~-r~~~~~~~~~~~~~ykvv~~g~~~~~~--~~~~~~~~evyds~~~~~~~~W~~~~ 255 (453)
...++.|.- .+.|.++...+.. |-.+..++. + .|+++.++.+... .......++.|++.+ ++|..+.
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~-~---~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~----nsW~kl~ 129 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVI-G---GKLYVFGGYGKSVSSSPQVFNDAYRYDPST----NSWHKLD 129 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheee-C---CeEEEeeccccCCCCCceEeeeeEEecCCC----Chhheec
Confidence 356666654 5689999887653 443332333 2 3888887653221 111245678899999 9999875
Q ss_pred C-CCCcccCCCCCeEEECC-EEEEEecC---------------------------------------CCEEEEEECCCCc
Q 045071 256 S-LPRLCSLESGRMVQVNG-KFYCMNYS---------------------------------------PFSVLAYDISANA 294 (453)
Q Consensus 256 ~-~p~~~~~~~~~~v~~~G-~lY~~~~~---------------------------------------~~~i~~yD~~~~~ 294 (453)
. .|.. +.....+..++ .+|+.++. ...+++||+.+++
T Consensus 130 t~sP~g--l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~ 207 (381)
T COG3055 130 TRSPTG--LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQ 207 (381)
T ss_pred cccccc--cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccch
Confidence 4 3331 22233455555 78876421 0268999999999
Q ss_pred EEEee-cCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHH
Q 045071 295 WFNIQ-APMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQ 356 (453)
Q Consensus 295 W~~i~-~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~ 356 (453)
|+..- .|.-. .....++--+++|.+|.+.-+..+. +..+....+..+..+|.++..+|..
T Consensus 208 W~~~G~~pf~~-~aGsa~~~~~n~~~lInGEiKpGLR-t~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 208 WRNLGENPFYG-NAGSAVVIKGNKLTLINGEIKPGLR-TAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred hhhcCcCcccC-ccCcceeecCCeEEEEcceecCCcc-ccceeEEEeccCceeeeeccCCCCC
Confidence 98774 34321 1222344557779999986655431 2233444444557789998887753
No 35
>PF13964 Kelch_6: Kelch motif
Probab=97.80 E-value=5.2e-05 Score=51.37 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=35.2
Q ss_pred CCCeeeeecCceEEEEecCCC----CeeEEEEcCcccceecCCCCCCCC
Q 045071 159 SEFSPASSSGGLVCWVSDHAG----AKTLILCNPVTGSLSQLPPTLRPR 203 (453)
Q Consensus 159 ~~~~~~~s~~Gll~~~~~~~~----~~~~~v~NP~T~~w~~LP~~~~~r 203 (453)
+....+++.+|-|++.++... .+.+++|||.|++|..+|+|+.+|
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 334456677888888776543 468999999999999999999876
No 36
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.59 E-value=0.0053 Score=60.37 Aligned_cols=231 Identities=16% Similarity=0.184 Sum_probs=113.2
Q ss_pred ceeeeCCCCCeEecc-CCCCCCCCe--eeeecCceEEEEecC----CCCeeEEEEcCcccceecCCCC-------CCCCC
Q 045071 139 GYLFDPHELSWYRIS-FALVPSEFS--PASSSGGLVCWVSDH----AGAKTLILCNPVTGSLSQLPPT-------LRPRL 204 (453)
Q Consensus 139 ~~~fdp~~~~w~~l~-l~~lp~~~~--~~~s~~Gll~~~~~~----~~~~~~~v~NP~T~~w~~LP~~-------~~~r~ 204 (453)
..+|+...++|.--. -..+|.... -..+.+--+++.++. ...++++-.-..--+|++|.+- |.||.
T Consensus 59 LHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRl 138 (830)
T KOG4152|consen 59 LHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRL 138 (830)
T ss_pred hhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCcc
Confidence 457999999997433 233443221 111222223333321 0112222222222357777542 23454
Q ss_pred cceEEEEEcCCceEEEEEccC---CCCc-ccccccceeEE--EcccCCCCCcccccC---CCCCcccCCCCCeEEE----
Q 045071 205 FPSIGLKVTPTAVDVTVAGDD---LISP-YAVKNLSSESF--HIDAGGFFSLWGTTS---SLPRLCSLESGRMVQV---- 271 (453)
Q Consensus 205 ~~~~~~~~~~~~ykvv~~g~~---~~~~-~~~~~~~~evy--ds~~~~~~~~W~~~~---~~p~~~~~~~~~~v~~---- 271 (453)
-+.+.+. +.|+|++|+. ..++ ..+..+--..| ....|.-.-.|.... .+|. ...++.+|..
T Consensus 139 GHSFsl~----gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~--pRESHTAViY~eKD 212 (830)
T KOG4152|consen 139 GHSFSLV----GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPP--PRESHTAVIYTEKD 212 (830)
T ss_pred CceeEEe----ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCC--CcccceeEEEEecc
Confidence 4443333 2599999873 1122 11112222333 333322114587632 2332 2333444443
Q ss_pred --CCEEEEEecC----CCEEEEEECCCCcEEEeec----CCccccCCCceeeeCCeEEEEEEEec----c-C-------C
Q 045071 272 --NGKFYCMNYS----PFSVLAYDISANAWFNIQA----PMRRFLRSPSLLDSNGKLILVAAVEK----S-K-------L 329 (453)
Q Consensus 272 --~G~lY~~~~~----~~~i~~yD~~~~~W~~i~~----p~~~~~~~~~lv~~~g~L~vv~~~~~----~-~-------~ 329 (453)
..++|+.++. ...++-+|+++..|.+... |+|+.+. .....++|.|++|+--. + . .
T Consensus 213 s~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLH--sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEW 290 (830)
T KOG4152|consen 213 SKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLH--SATTIGNKMYVFGGWVPLVMDDVKVATHEKEW 290 (830)
T ss_pred CCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccc--cceeecceeEEecceeeeecccccccccccee
Confidence 2357766542 3578999999999998743 6665443 34567899999887321 1 0 0
Q ss_pred CCCCcEEEEEeecCCCCeEEEee--cCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc
Q 045071 330 NVPKSLRLWSLQACGTLWAEIER--MPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR 384 (453)
Q Consensus 330 ~~~~~i~vw~ld~~~~~W~~v~~--mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~ 384 (453)
.-+.++.-|.+| +..|+.+.. +.+. -. ..++.+-..++.|+++||...
T Consensus 291 kCTssl~clNld--t~~W~tl~~d~~ed~----ti-PR~RAGHCAvAigtRlYiWSG 340 (830)
T KOG4152|consen 291 KCTSSLACLNLD--TMAWETLLMDTLEDN----TI-PRARAGHCAVAIGTRLYIWSG 340 (830)
T ss_pred eeccceeeeeec--chheeeeeecccccc----cc-ccccccceeEEeccEEEEEec
Confidence 112244555555 688986421 2111 00 112334455778999999865
No 37
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.54 E-value=0.0029 Score=59.64 Aligned_cols=161 Identities=16% Similarity=0.253 Sum_probs=97.8
Q ss_pred eEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC----------CEEEEEECCCCcEEEeecCCccccC
Q 045071 238 ESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP----------FSVLAYDISANAWFNIQAPMRRFLR 307 (453)
Q Consensus 238 evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~----------~~i~~yD~~~~~W~~i~~p~~~~~~ 307 (453)
..-|.+..+ ..|+.++..|.. .+.....++++|+||+.+... +.+..||+.+++|.++..-.|....
T Consensus 61 y~ldL~~~~--k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~ 137 (381)
T COG3055 61 YVLDLKKPG--KGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLV 137 (381)
T ss_pred eehhhhcCC--CCceEcccCCCc-ccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccc
Confidence 344444433 789999887642 222345688999999986421 4689999999999998665555444
Q ss_pred CCceeeeCC-eEEEEEEEeccCC-------------------------CC-C----CcEEEEEeecCCCCeEEEeecCHH
Q 045071 308 SPSLLDSNG-KLILVAAVEKSKL-------------------------NV-P----KSLRLWSLQACGTLWAEIERMPQQ 356 (453)
Q Consensus 308 ~~~lv~~~g-~L~vv~~~~~~~~-------------------------~~-~----~~i~vw~ld~~~~~W~~v~~mp~~ 356 (453)
....+..++ ++++.+++.+.-. +. + ..-+|+.+++..+.|.-+...|-
T Consensus 138 G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf- 216 (381)
T COG3055 138 GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF- 216 (381)
T ss_pred cceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcc-
Confidence 444455666 9999998754210 00 0 01256777777888877666653
Q ss_pred HHHHhhcccCCCcEEEEeeCCEEEEEEcC------CCeEEEEECCC--CceEEcCCCCCcCC
Q 045071 357 LYAQFAEIEAGNGFDTIGHGEFIVIVIRG------SDKALLFDLCM--KSWQWIPRCPYVQA 410 (453)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~g~~I~l~~~~------~~~v~~Yd~~~--~~W~~l~~~p~~~~ 410 (453)
... .+..++..+|.+.+.... ...+..+|+.. -+|..++..|....
T Consensus 217 -----~~~---aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~ 270 (381)
T COG3055 217 -----YGN---AGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIG 270 (381)
T ss_pred -----cCc---cCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCC
Confidence 111 122334456755554332 34566666664 57888877765544
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=4e-05 Score=70.42 Aligned_cols=42 Identities=29% Similarity=0.609 Sum_probs=38.3
Q ss_pred cccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccc
Q 045071 49 RIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSF 90 (453)
Q Consensus 49 ~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F 90 (453)
.-|..||||+++.|++.|+.++|.++..|||||+++.++...
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~l 137 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESL 137 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccc
Confidence 349999999999999999999999999999999999876554
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=97.32 E-value=0.00082 Score=44.63 Aligned_cols=44 Identities=11% Similarity=0.250 Sum_probs=35.3
Q ss_pred CCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecC
Q 045071 308 SPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMP 354 (453)
Q Consensus 308 ~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp 354 (453)
...++..+++||++||..... ...-.++.||..+++|+++..||
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~---~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNN---QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTS---SBEEEEEEEETTTTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccC---ceeeeEEEEeCCCCEEEEcCCCC
Confidence 456788999999999987621 23447889999999999999987
No 40
>PF13964 Kelch_6: Kelch motif
Probab=97.28 E-value=0.00082 Score=45.38 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=32.1
Q ss_pred EEEEeeCCEEEEEEcC------CCeEEEEECCCCceEEcCCCCCc
Q 045071 370 FDTIGHGEFIVIVIRG------SDKALLFDLCMKSWQWIPRCPYV 408 (453)
Q Consensus 370 ~~~~~~g~~I~l~~~~------~~~v~~Yd~~~~~W~~l~~~p~~ 408 (453)
..++..++.||+.+.. .+.+.+||+++++|+.++++|..
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p 49 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP 49 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence 4566788999998653 46899999999999999998854
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=96.99 E-value=0.0012 Score=44.30 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=34.3
Q ss_pred CCceeeeCCeEEEEEEE-eccCCCCCCcEEEEEeecCCCCeEEEeecC
Q 045071 308 SPSLLDSNGKLILVAAV-EKSKLNVPKSLRLWSLQACGTLWAEIERMP 354 (453)
Q Consensus 308 ~~~lv~~~g~L~vv~~~-~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp 354 (453)
.+..+..+++|||+|+. ... .....-++|.||.++.+|+++..||
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~--~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDN--GGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred ceEEEEECCEEEEECCcccCC--CCcccceeEEEECCCCEEeecCCCC
Confidence 34667899999999998 211 1234558999999999999988775
No 42
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=96.48 E-value=0.0044 Score=41.01 Aligned_cols=38 Identities=18% Similarity=0.399 Sum_probs=31.1
Q ss_pred cEEEEeeCCEEEEEEcC------CCeEEEEECCCCceEEcCCCC
Q 045071 369 GFDTIGHGEFIVIVIRG------SDKALLFDLCMKSWQWIPRCP 406 (453)
Q Consensus 369 ~~~~~~~g~~I~l~~~~------~~~v~~Yd~~~~~W~~l~~~p 406 (453)
...++..++.||+.++. ...+.+||+.+++|+.++++|
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 45667789999998652 468999999999999998775
No 43
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=96.19 E-value=0.0092 Score=39.91 Aligned_cols=44 Identities=16% Similarity=0.360 Sum_probs=25.5
Q ss_pred Cceeee-CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCH
Q 045071 309 PSLLDS-NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQ 355 (453)
Q Consensus 309 ~~lv~~-~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~ 355 (453)
+.++.. +++|||+|+..... ...=++|.+|..+++|+++..||.
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~---~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSG---SPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-T---EE---EEEEETTTTEEEE--SS--
T ss_pred EEEEEEeCCeEEEECCCCCCC---cccCCEEEEECCCCEEEECCCCCC
Confidence 345555 69999999976541 012278999999999999988873
No 44
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.84 E-value=1.4 Score=40.10 Aligned_cols=187 Identities=18% Similarity=0.155 Sum_probs=99.7
Q ss_pred cCceEEEEecCCCCeeEEEEcCcccc--eecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEccc
Q 045071 167 SGGLVCWVSDHAGAKTLILCNPVTGS--LSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDA 244 (453)
Q Consensus 167 ~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~ 244 (453)
.+|.+++... ...++.+|+.|++ |+.-. +.+-... . ...+ .+|++...+ .....+|..+
T Consensus 35 ~~~~v~~~~~---~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~-~~~~---~~v~v~~~~---------~~l~~~d~~t 95 (238)
T PF13360_consen 35 DGGRVYVASG---DGNLYALDAKTGKVLWRFDL--PGPISGA-P-VVDG---GRVYVGTSD---------GSLYALDAKT 95 (238)
T ss_dssp ETTEEEEEET---TSEEEEEETTTSEEEEEEEC--SSCGGSG-E-EEET---TEEEEEETT---------SEEEEEETTT
T ss_pred eCCEEEEEcC---CCEEEEEECCCCCEEEEeec--cccccce-e-eecc---cccccccce---------eeeEecccCC
Confidence 7788887643 3489999999887 43322 2111111 1 2222 256655432 1346677777
Q ss_pred CCCCCcccc-cCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCc--EEEeecCCccccC--------CCceee
Q 045071 245 GGFFSLWGT-TSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANA--WFNIQAPMRRFLR--------SPSLLD 313 (453)
Q Consensus 245 ~~~~~~W~~-~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~--W~~i~~p~~~~~~--------~~~lv~ 313 (453)
|. -.|+. ....+...........+.++.+|+.... ..|.++|+++++ |+.- ...+.... ...++.
T Consensus 96 G~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~ 171 (238)
T PF13360_consen 96 GK--VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-GKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSPVI 171 (238)
T ss_dssp SC--EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-SEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEEEC
T ss_pred cc--eeeeeccccccccccccccCceEecCEEEEEecc-CcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccceEE
Confidence 66 67883 3322211111112344457788877654 689999999764 6543 23322111 112333
Q ss_pred eCCeEEEEEEEeccCCCCCCcEEEEEeecCCC--CeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEE
Q 045071 314 SNGKLILVAAVEKSKLNVPKSLRLWSLQACGT--LWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALL 391 (453)
Q Consensus 314 ~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~--~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~ 391 (453)
.+|.+|+... +. .+..+|..++ .|+. . +.. ..-.....++.+|+.. ..+.+.+
T Consensus 172 ~~~~v~~~~~--~g--------~~~~~d~~tg~~~w~~-~-~~~------------~~~~~~~~~~~l~~~~-~~~~l~~ 226 (238)
T PF13360_consen 172 SDGRVYVSSG--DG--------RVVAVDLATGEKLWSK-P-ISG------------IYSLPSVDGGTLYVTS-SDGRLYA 226 (238)
T ss_dssp CTTEEEEECC--TS--------SEEEEETTTTEEEEEE-C-SS-------------ECECEECCCTEEEEEE-TTTEEEE
T ss_pred ECCEEEEEcC--CC--------eEEEEECCCCCEEEEe-c-CCC------------ccCCceeeCCEEEEEe-CCCEEEE
Confidence 4677776442 11 1344454444 3732 2 322 0111355789999887 5799999
Q ss_pred EECCCCceEE
Q 045071 392 FDLCMKSWQW 401 (453)
Q Consensus 392 Yd~~~~~W~~ 401 (453)
+|+++++-.|
T Consensus 227 ~d~~tG~~~W 236 (238)
T PF13360_consen 227 LDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEe
Confidence 9999987444
No 45
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.54 E-value=1.1 Score=43.76 Aligned_cols=258 Identities=20% Similarity=0.238 Sum_probs=124.9
Q ss_pred eeeeCCCCCeEeccC-CCCC-CCCeeeeecCceEEEEecCC-CCee--EEEEcCcccceecCCCCCCCCCcceEEEEEcC
Q 045071 140 YLFDPHELSWYRISF-ALVP-SEFSPASSSGGLVCWVSDHA-GAKT--LILCNPVTGSLSQLPPTLRPRLFPSIGLKVTP 214 (453)
Q Consensus 140 ~~fdp~~~~w~~l~l-~~lp-~~~~~~~s~~Gll~~~~~~~-~~~~--~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~ 214 (453)
+.||..+.++..+.. .... ..+..+...+..||...... .... .+-+++.+++...+...+.....+ ..+.+++
T Consensus 18 ~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p-~~i~~~~ 96 (345)
T PF10282_consen 18 FRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP-CHIAVDP 96 (345)
T ss_dssp EEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE-EEEEECT
T ss_pred EEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc-EEEEEec
Confidence 456777777665442 1111 12334455677777766532 2223 345566666666654443211222 2355555
Q ss_pred CceEEEEEccCCCCcccccccceeEEEcccCCC----CCccccc--CCCC-CcccCCCCCeEEE-CC-EEEEEecCCCEE
Q 045071 215 TAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF----FSLWGTT--SSLP-RLCSLESGRMVQV-NG-KFYCMNYSPFSV 285 (453)
Q Consensus 215 ~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~----~~~W~~~--~~~p-~~~~~~~~~~v~~-~G-~lY~~~~~~~~i 285 (453)
+...++++.... -++.+|+...... ...+... .+.+ +-.....+..++- +| .+|+.....+.|
T Consensus 97 ~g~~l~vany~~--------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 97 DGRFLYVANYGG--------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp TSSEEEEEETTT--------TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred CCCEEEEEEccC--------CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 555566653211 1335555543100 0111110 0011 0000011222332 34 577666556789
Q ss_pred EEEECCCCc--EEE---eecCCccccCCC-ceee--eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEee---cC
Q 045071 286 LAYDISANA--WFN---IQAPMRRFLRSP-SLLD--SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIER---MP 354 (453)
Q Consensus 286 ~~yD~~~~~--W~~---i~~p~~~~~~~~-~lv~--~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~---mp 354 (453)
..|+..... ... +..|.. ..+ .++- .+..+|+++. . ...+.++.++.....++.+.. +|
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G---~GPRh~~f~pdg~~~Yv~~e--~-----s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPG---SGPRHLAFSPDGKYAYVVNE--L-----SNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTT---SSEEEEEE-TTSSEEEEEET--T-----TTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EEEEEeCCCceEEEeeccccccC---CCCcEEEEcCCcCEEEEecC--C-----CCcEEEEeecccCCceeEEEEeeecc
Confidence 999988765 543 222321 122 2322 2346676552 1 246788998866667776544 33
Q ss_pred HHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECC--CCceEEcCCCCCcCCCCCCCCCCCCCceeEEEEeccc
Q 045071 355 QQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLC--MKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPR 432 (453)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~--~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~f~P~ 432 (453)
.. +........+.....|.++|+..+..+.|.+|+++ +++.+.+...+.. +...+.+++.|.
T Consensus 239 ~~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~------------G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 239 EG----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG------------GKFPRHFAFSPD 302 (345)
T ss_dssp TT----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES------------SSSEEEEEE-TT
T ss_pred cc----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC------------CCCccEEEEeCC
Confidence 31 11100111233344688999998888999999984 4577766544421 224667777663
No 46
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=95.43 E-value=0.017 Score=56.82 Aligned_cols=138 Identities=13% Similarity=0.119 Sum_probs=86.1
Q ss_pred CCCCeEEECC--EEEEEecCC-----CEEEEEECCCCcEEEeecC--CccccCCCceee--eCCeEEEEEEEeccC--CC
Q 045071 264 ESGRMVQVNG--KFYCMNYSP-----FSVLAYDISANAWFNIQAP--MRRFLRSPSLLD--SNGKLILVAAVEKSK--LN 330 (453)
Q Consensus 264 ~~~~~v~~~G--~lY~~~~~~-----~~i~~yD~~~~~W~~i~~p--~~~~~~~~~lv~--~~g~L~vv~~~~~~~--~~ 330 (453)
..+++|...+ ++|..++-. ...+.|+...+.|.++..- .|..+.++.+|. ...|||+.|..-... -.
T Consensus 262 gGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~ 341 (723)
T KOG2437|consen 262 GGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNS 341 (723)
T ss_pred CcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccc
Confidence 3466788776 899876531 2468999999999998542 456667777775 456999988643321 01
Q ss_pred CCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--------CCeEEEEECCCCceEEc
Q 045071 331 VPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--------SDKALLFDLCMKSWQWI 402 (453)
Q Consensus 331 ~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--------~~~v~~Yd~~~~~W~~l 402 (453)
...+-++|++|.+++.|.-+ ++...- .+-..........+.+..+.||+.++. ...+.+||.....|+.+
T Consensus 342 ~s~RsDfW~FDi~~~~W~~l-s~dt~~-dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 342 KSLRSDFWRFDIDTNTWMLL-SEDTAA-DGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred cccccceEEEecCCceeEEe-cccccc-cCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 12345899999999999753 332210 000000001223333444558876542 45799999999999876
Q ss_pred C
Q 045071 403 P 403 (453)
Q Consensus 403 ~ 403 (453)
.
T Consensus 420 ~ 420 (723)
T KOG2437|consen 420 R 420 (723)
T ss_pred H
Confidence 4
No 47
>smart00612 Kelch Kelch domain.
Probab=95.37 E-value=0.031 Score=36.52 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=25.9
Q ss_pred EEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCC
Q 045071 218 DVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR 259 (453)
Q Consensus 218 kvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~ 259 (453)
+||++|+.... .....+++||+.+ +.|+..++|+.
T Consensus 1 ~iyv~GG~~~~---~~~~~v~~yd~~~----~~W~~~~~~~~ 35 (47)
T smart00612 1 KIYVVGGFDGG---QRLKSVEVYDPET----NKWTPLPSMPT 35 (47)
T ss_pred CEEEEeCCCCC---ceeeeEEEECCCC----CeEccCCCCCC
Confidence 47888875321 1245679999999 99999998876
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=95.33 E-value=0.36 Score=44.36 Aligned_cols=151 Identities=10% Similarity=0.140 Sum_probs=81.7
Q ss_pred ceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecC---CCEEEEEECCC----CcEEEeecCCccccCC
Q 045071 236 SSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYS---PFSVLAYDISA----NAWFNIQAPMRRFLRS 308 (453)
Q Consensus 236 ~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~---~~~i~~yD~~~----~~W~~i~~p~~~~~~~ 308 (453)
...+||..+ ++++.+.-.. ..+++...+.-||.+...++. ...+-.|++.+ ..|.+....+...+--
T Consensus 47 ~s~~yD~~t----n~~rpl~v~t--d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY 120 (243)
T PF07250_consen 47 HSVEYDPNT----NTFRPLTVQT--DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWY 120 (243)
T ss_pred EEEEEecCC----CcEEeccCCC--CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCcc
Confidence 357899998 8888764321 134444455567877766543 24577888876 6787764434332222
Q ss_pred Cceee-eCCeEEEEEEEeccCCCCCCcEEEEEeecCC---CCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc
Q 045071 309 PSLLD-SNGKLILVAAVEKSKLNVPKSLRLWSLQACG---TLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR 384 (453)
Q Consensus 309 ~~lv~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~---~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~ 384 (453)
+.... -+|++++||+... -.|++-+.. .....+.-+ ......... .-.++..+.-++.||+...
T Consensus 121 pT~~~L~DG~vlIvGG~~~---------~t~E~~P~~~~~~~~~~~~~l-~~~~~~~~~--nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNN---------PTYEFWPPKGPGPGPVTLPFL-SQTSDTLPN--NLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred ccceECCCCCEEEEeCcCC---------CcccccCCccCCCCceeeecc-hhhhccCcc--ccCceEEEcCCCCEEEEEc
Confidence 33332 4899999998653 223333321 111111111 111110111 1123444444555666544
Q ss_pred CCCeEEEEECCCCce-EEcCCCC
Q 045071 385 GSDKALLFDLCMKSW-QWIPRCP 406 (453)
Q Consensus 385 ~~~~v~~Yd~~~~~W-~~l~~~p 406 (453)
.....||..++++ +.+|.+|
T Consensus 189 --~~s~i~d~~~n~v~~~lP~lP 209 (243)
T PF07250_consen 189 --RGSIIYDYKTNTVVRTLPDLP 209 (243)
T ss_pred --CCcEEEeCCCCeEEeeCCCCC
Confidence 5678899999987 7788877
No 49
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.32 E-value=2.4 Score=39.25 Aligned_cols=220 Identities=14% Similarity=0.103 Sum_probs=121.8
Q ss_pred eeeCCCCCeEeccCCCCCCCCe-eeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcc-eEEEEEcCCceE
Q 045071 141 LFDPHELSWYRISFALVPSEFS-PASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFP-SIGLKVTPTAVD 218 (453)
Q Consensus 141 ~fdp~~~~w~~l~l~~lp~~~~-~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~-~~~~~~~~~~yk 218 (453)
..||.+.+-...+++.-.+-+. +++-.++..++ .. ..-+..++|.|.+..+.|-+.. +... .-..++|+.+..
T Consensus 87 hLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wit-d~---~~aI~R~dpkt~evt~f~lp~~-~a~~nlet~vfD~~G~l 161 (353)
T COG4257 87 HLDPATGEVETYPLGSGASPHGIVVGPDGSAWIT-DT---GLAIGRLDPKTLEVTRFPLPLE-HADANLETAVFDPWGNL 161 (353)
T ss_pred ecCCCCCceEEEecCCCCCCceEEECCCCCeeEe-cC---cceeEEecCcccceEEeecccc-cCCCcccceeeCCCccE
Confidence 3688888888777665433333 34444444433 22 1257788999998877765422 1110 001233433222
Q ss_pred EEEEccCC----CCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCc
Q 045071 219 VTVAGDDL----ISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANA 294 (453)
Q Consensus 219 vv~~g~~~----~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~ 294 (453)
-+ .+..+ -++ ....+++|..-.|. -| ..-.+.-||.+|+.....+.|...|+.+..
T Consensus 162 WF-t~q~G~yGrLdP---a~~~i~vfpaPqG~----------gp------yGi~atpdGsvwyaslagnaiaridp~~~~ 221 (353)
T COG4257 162 WF-TGQIGAYGRLDP---ARNVISVFPAPQGG----------GP------YGICATPDGSVWYASLAGNAIARIDPFAGH 221 (353)
T ss_pred EE-eeccccceecCc---ccCceeeeccCCCC----------CC------cceEECCCCcEEEEeccccceEEcccccCC
Confidence 22 22111 011 11223344322210 01 122345689999887666789999999987
Q ss_pred EEEeecCCccccCCCce-eeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEE-E
Q 045071 295 WFNIQAPMRRFLRSPSL-LDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFD-T 372 (453)
Q Consensus 295 W~~i~~p~~~~~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~-~ 372 (453)
-++++.|.+.......+ +...|++.+-.- .. -.+..+|+...+|.+- .||.. ..+... .
T Consensus 222 aev~p~P~~~~~gsRriwsdpig~~wittw--g~-------g~l~rfdPs~~sW~ey-pLPgs---------~arpys~r 282 (353)
T COG4257 222 AEVVPQPNALKAGSRRIWSDPIGRAWITTW--GT-------GSLHRFDPSVTSWIEY-PLPGS---------KARPYSMR 282 (353)
T ss_pred cceecCCCcccccccccccCccCcEEEecc--CC-------ceeeEeCcccccceee-eCCCC---------CCCcceee
Confidence 77775554422222223 345677775321 11 1678889988889874 45541 011222 2
Q ss_pred EeeCCEEEEEEcCCCeEEEEECCCCceEEcCC
Q 045071 373 IGHGEFIVIVIRGSDKALLFDLCMKSWQWIPR 404 (453)
Q Consensus 373 ~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~~ 404 (453)
+-.-++|++..-..+.+..||+++.+.+.+|.
T Consensus 283 VD~~grVW~sea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 283 VDRHGRVWLSEADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred eccCCcEEeeccccCceeecCcccceEEEecC
Confidence 34567888876667899999999999998863
No 50
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=95.24 E-value=1.9 Score=44.77 Aligned_cols=45 Identities=29% Similarity=0.485 Sum_probs=39.8
Q ss_pred ccccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCccchh
Q 045071 48 SRIWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSNSFLE 92 (453)
Q Consensus 48 ~~~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~~F~~ 92 (453)
....+.||.++...||..|+.++++.+++||+.|+.++.+.....
T Consensus 105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence 355778999999999999999999999999999999998766544
No 51
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.19 E-value=0.0061 Score=56.61 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=38.9
Q ss_pred cCCChHHHHHHHHhcC-----ChhhhhhhhhccccccccccCccchhhh
Q 045071 51 WSKLPQRLLDRVLAFL-----PPPAFFRARAVCKRWYGLLFSNSFLELY 94 (453)
Q Consensus 51 w~~LP~dll~~IL~rL-----p~~~l~r~r~VCK~W~~~i~s~~F~~~~ 94 (453)
+..||||+|.+||.++ .+.+|.++.+|||.|+-...+|.|.++.
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 4689999999999776 3689999999999999999999987764
No 52
>smart00612 Kelch Kelch domain.
Probab=95.17 E-value=0.069 Score=34.80 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.7
Q ss_pred CeeEEEEcCcccceecCCCCCCCCCcce
Q 045071 180 AKTLILCNPVTGSLSQLPPTLRPRLFPS 207 (453)
Q Consensus 180 ~~~~~v~NP~T~~w~~LP~~~~~r~~~~ 207 (453)
...+.+|||.+++|..+|+|+.+|..+.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 41 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHG 41 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccce
Confidence 3468899999999999999998887654
No 53
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.79 E-value=1.8 Score=39.82 Aligned_cols=194 Identities=16% Similarity=0.207 Sum_probs=101.5
Q ss_pred CceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC
Q 045071 168 GGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF 247 (453)
Q Consensus 168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~ 247 (453)
+|-|++..-. ...++.++|.+++...+.... ..|+..+....+++++... ...++|..+
T Consensus 11 ~g~l~~~D~~--~~~i~~~~~~~~~~~~~~~~~------~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~--- 69 (246)
T PF08450_consen 11 DGRLYWVDIP--GGRIYRVDPDTGEVEVIDLPG------PNGMAFDRPDGRLYVADSG----------GIAVVDPDT--- 69 (246)
T ss_dssp TTEEEEEETT--TTEEEEEETTTTEEEEEESSS------EEEEEEECTTSEEEEEETT----------CEEEEETTT---
T ss_pred CCEEEEEEcC--CCEEEEEECCCCeEEEEecCC------CceEEEEccCCEEEEEEcC----------ceEEEecCC---
Confidence 4666665432 347888999988765433222 3466665333566766442 225667777
Q ss_pred CCcccccCCCCCc--ccCCCCCeEE-ECCEEEEEecCC--------CEEEEEECCCCcEEEeecCCccccCCC-cee-ee
Q 045071 248 FSLWGTTSSLPRL--CSLESGRMVQ-VNGKFYCMNYSP--------FSVLAYDISANAWFNIQAPMRRFLRSP-SLL-DS 314 (453)
Q Consensus 248 ~~~W~~~~~~p~~--~~~~~~~~v~-~~G~lY~~~~~~--------~~i~~yD~~~~~W~~i~~p~~~~~~~~-~lv-~~ 314 (453)
+.++.+...+.. ......+.++ -+|.+|+..... ..++.+|+. ++...+...+ ..+ .|+ .-
T Consensus 70 -g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~----~~pNGi~~s~ 143 (246)
T PF08450_consen 70 -GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL----GFPNGIAFSP 143 (246)
T ss_dssp -TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE----SSEEEEEEET
T ss_pred -CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc----ccccceEECC
Confidence 777765443210 0111122232 368899875421 469999999 6655542221 111 232 34
Q ss_pred CCe-EEEEEEEeccCCCCCCcEEEEEeecC--CCCeEEE---eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCe
Q 045071 315 NGK-LILVAAVEKSKLNVPKSLRLWSLQAC--GTLWAEI---ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDK 388 (453)
Q Consensus 315 ~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~~v---~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~ 388 (453)
+|+ ||++.. .. . +||+++.. ...+... ..++... .. .-++ ++...+.||+.....++
T Consensus 144 dg~~lyv~ds-~~------~--~i~~~~~~~~~~~~~~~~~~~~~~~~~----g~---pDG~-~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 144 DGKTLYVADS-FN------G--RIWRFDLDADGGELSNRRVFIDFPGGP----GY---PDGL-AVDSDGNLWVADWGGGR 206 (246)
T ss_dssp TSSEEEEEET-TT------T--EEEEEEEETTTCCEEEEEEEEE-SSSS----CE---EEEE-EEBTTS-EEEEEETTTE
T ss_pred cchheeeccc-cc------c--eeEEEeccccccceeeeeeEEEcCCCC----cC---CCcc-eEcCCCCEEEEEcCCCE
Confidence 555 555332 11 1 57776654 3445432 2333210 00 0122 23346679998777899
Q ss_pred EEEEECCCCceEEcCCCC
Q 045071 389 ALLFDLCMKSWQWIPRCP 406 (453)
Q Consensus 389 v~~Yd~~~~~W~~l~~~p 406 (453)
|.+||++.+....++ +|
T Consensus 207 I~~~~p~G~~~~~i~-~p 223 (246)
T PF08450_consen 207 IVVFDPDGKLLREIE-LP 223 (246)
T ss_dssp EEEEETTSCEEEEEE--S
T ss_pred EEEECCCccEEEEEc-CC
Confidence 999999966666664 44
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=94.79 E-value=0.8 Score=44.71 Aligned_cols=132 Identities=14% Similarity=0.185 Sum_probs=75.8
Q ss_pred ECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCC---CCcEEEEEeec-----
Q 045071 271 VNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNV---PKSLRLWSLQA----- 342 (453)
Q Consensus 271 ~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~---~~~i~vw~ld~----- 342 (453)
.+.+|.++... ...+.||.++..-...+. +......+..+..+|+||+........... ...+++..++.
T Consensus 75 ~gskIv~~d~~-~~t~vyDt~t~av~~~P~-l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~ 152 (342)
T PF07893_consen 75 HGSKIVAVDQS-GRTLVYDTDTRAVATGPR-LHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDP 152 (342)
T ss_pred cCCeEEEEcCC-CCeEEEECCCCeEeccCC-CCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccc
Confidence 46777777665 569999999988764422 222233444566799999988754321100 01566665542
Q ss_pred -CCC--CeEEEeecCHHHHHHhhcccC--CCcEEEEeeCCEEEEEEcC-CCeEEEEECCCCceEEcCC--CCCc
Q 045071 343 -CGT--LWAEIERMPQQLYAQFAEIEA--GNGFDTIGHGEFIVIVIRG-SDKALLFDLCMKSWQWIPR--CPYV 408 (453)
Q Consensus 343 -~~~--~W~~v~~mp~~~~~~~~~~~~--~~~~~~~~~g~~I~l~~~~-~~~v~~Yd~~~~~W~~l~~--~p~~ 408 (453)
... .|..+.. |+ |........ ...+.++ .|..|+++..+ ....+.||.++.+|+++.. +|+.
T Consensus 153 ~~~~~w~W~~LP~-PP--f~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LPF~ 222 (342)
T PF07893_consen 153 SPEESWSWRSLPP-PP--FVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLPFH 222 (342)
T ss_pred cCCCcceEEcCCC-CC--ccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeeccceecCcC
Confidence 233 4554333 22 211111000 1123333 48899997553 2368999999999999865 5654
No 55
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=94.62 E-value=0.089 Score=35.09 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=23.9
Q ss_pred eeEEEEcCcccceecCCCCCCCCCcceE
Q 045071 181 KTLILCNPVTGSLSQLPPTLRPRLFPSI 208 (453)
Q Consensus 181 ~~~~v~NP~T~~w~~LP~~~~~r~~~~~ 208 (453)
+.++++|+.+++|++++.+|.+|..+.+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~ 46 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPRSGHTA 46 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCccceEE
Confidence 4789999999999999999888876543
No 56
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=94.58 E-value=0.081 Score=35.22 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=19.5
Q ss_pred CCEEEEEEcC------CCeEEEEECCCCceEEcCCCC
Q 045071 376 GEFIVIVIRG------SDKALLFDLCMKSWQWIPRCP 406 (453)
Q Consensus 376 g~~I~l~~~~------~~~v~~Yd~~~~~W~~l~~~p 406 (453)
++.||+.+.. .+.+.+||+++++|++++.+|
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 4778776532 468999999999999998776
No 57
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=94.24 E-value=0.76 Score=42.24 Aligned_cols=142 Identities=14% Similarity=0.143 Sum_probs=80.7
Q ss_pred ceeeeCCCCCeEeccCCCCCCCCeee---eecCceEEEEecC-CCCeeEEEEcCcc----cceecCCC-CCCCCCcceEE
Q 045071 139 GYLFDPHELSWYRISFALVPSEFSPA---SSSGGLVCWVSDH-AGAKTLILCNPVT----GSLSQLPP-TLRPRLFPSIG 209 (453)
Q Consensus 139 ~~~fdp~~~~w~~l~l~~lp~~~~~~---~s~~Gll~~~~~~-~~~~~~~v~NP~T----~~w~~LP~-~~~~r~~~~~~ 209 (453)
...||+.++++..+... .+..|. --.+|-++..++. .+.+.+.+++|.+ ..|.+.+. |..+|.++.+.
T Consensus 48 s~~yD~~tn~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCC---CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 45799999999887643 121111 1125655555543 3345677888876 67998874 88899998765
Q ss_pred EEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC-CCcccccCCCC--CcccCCCCCeEEECCEEEEEecCCCEEE
Q 045071 210 LKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF-FSLWGTTSSLP--RLCSLESGRMVQVNGKFYCMNYSPFSVL 286 (453)
Q Consensus 210 ~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~-~~~W~~~~~~p--~~~~~~~~~~v~~~G~lY~~~~~~~~i~ 286 (453)
...| -+|+++||... .+.|.|....... ...|..+.... ...++....-+.-+|+|++.... .-.
T Consensus 125 ~L~D---G~vlIvGG~~~-------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~ 192 (243)
T PF07250_consen 125 TLPD---GRVLIVGGSNN-------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSI 192 (243)
T ss_pred ECCC---CCEEEEeCcCC-------CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcE
Confidence 5444 37888888642 2235444322110 01222222111 01122222234458999888774 456
Q ss_pred EEECCCCcE
Q 045071 287 AYDISANAW 295 (453)
Q Consensus 287 ~yD~~~~~W 295 (453)
.||..++++
T Consensus 193 i~d~~~n~v 201 (243)
T PF07250_consen 193 IYDYKTNTV 201 (243)
T ss_pred EEeCCCCeE
Confidence 779999877
No 58
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=94.19 E-value=1.1 Score=40.85 Aligned_cols=119 Identities=15% Similarity=0.241 Sum_probs=63.9
Q ss_pred EECCEEEEEecCCCEEEEEECCCCcEEEeecCCcc-c-cCC-CceeeeC-----CeEEEEEEEeccCCCCCCcEEEEEee
Q 045071 270 QVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRR-F-LRS-PSLLDSN-----GKLILVAAVEKSKLNVPKSLRLWSLQ 341 (453)
Q Consensus 270 ~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~-~-~~~-~~lv~~~-----g~L~vv~~~~~~~~~~~~~i~vw~ld 341 (453)
.|||.+ |+... ..+.++||.|++|..++.|... . ... ......+ =|+..+.....+. ....++||.+.
T Consensus 3 sCnGLl-c~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~--~~~~~~Vys~~ 78 (230)
T TIGR01640 3 PCDGLI-CFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR--NQSEHQVYTLG 78 (230)
T ss_pred ccceEE-EEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC--CCccEEEEEeC
Confidence 488988 55544 5799999999999988544321 0 011 0111111 1333332211111 12355677665
Q ss_pred cCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC----C-CeEEEEECCCCceEE-cC
Q 045071 342 ACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG----S-DKALLFDLCMKSWQW-IP 403 (453)
Q Consensus 342 ~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~----~-~~v~~Yd~~~~~W~~-l~ 403 (453)
+++|+++...+.... .. .. .+. .++.+|..... . ..++.||+++++|+. +|
T Consensus 79 --~~~Wr~~~~~~~~~~------~~-~~-~v~-~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~ 135 (230)
T TIGR01640 79 --SNSWRTIECSPPHHP------LK-SR-GVC-INGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP 135 (230)
T ss_pred --CCCccccccCCCCcc------cc-CC-eEE-ECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee
Confidence 679998874433110 01 11 222 35656655432 1 269999999999994 64
No 59
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=94.05 E-value=0.16 Score=33.88 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=26.9
Q ss_pred eEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCC
Q 045071 217 VDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLP 258 (453)
Q Consensus 217 ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p 258 (453)
.|||++|+.............++||.++ ++|+.+..+|
T Consensus 12 ~kiyv~GG~~~~~~~~~~~~v~~~d~~t----~~W~~~~~~g 49 (49)
T PF07646_consen 12 GKIYVFGGYGTDNGGSSSNDVWVFDTET----NQWTELSPMG 49 (49)
T ss_pred CEEEEECCcccCCCCcccceeEEEECCC----CEEeecCCCC
Confidence 4999999861111122346779999999 9999987664
No 60
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=93.96 E-value=0.13 Score=34.32 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=20.4
Q ss_pred CCeEEEEECCCCceEEcCCCCCcC
Q 045071 386 SDKALLFDLCMKSWQWIPRCPYVQ 409 (453)
Q Consensus 386 ~~~v~~Yd~~~~~W~~l~~~p~~~ 409 (453)
.+.+++||+.+++|+.++.+|..+
T Consensus 18 ~nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 18 LNDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred ecCEEEEECCCCEEEECCCCCCCc
Confidence 468999999999999998877654
No 61
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.88 E-value=7.5 Score=38.66 Aligned_cols=103 Identities=17% Similarity=0.339 Sum_probs=62.0
Q ss_pred CeEEECCEEEEEecCCCEEEEEECCCCc--EEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCC
Q 045071 267 RMVQVNGKFYCMNYSPFSVLAYDISANA--WFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACG 344 (453)
Q Consensus 267 ~~v~~~G~lY~~~~~~~~i~~yD~~~~~--W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~ 344 (453)
.+++.+|.+|+.... ..+.++|+.+++ |+.- ... ...++..+|+||++.... +++.+|..+
T Consensus 251 sP~v~~~~vy~~~~~-g~l~ald~~tG~~~W~~~---~~~---~~~~~~~~~~vy~~~~~g----------~l~ald~~t 313 (394)
T PRK11138 251 TPVVVGGVVYALAYN-GNLVALDLRSGQIVWKRE---YGS---VNDFAVDGGRIYLVDQND----------RVYALDTRG 313 (394)
T ss_pred CcEEECCEEEEEEcC-CeEEEEECCCCCEEEeec---CCC---ccCcEEECCEEEEEcCCC----------eEEEEECCC
Confidence 457789999988765 689999999864 7642 111 113456788998865311 566666543
Q ss_pred --CCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071 345 --TLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW 399 (453)
Q Consensus 345 --~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W 399 (453)
..|+.- .+.... . . .-+..++.||+... .+.+.++|..+.+-
T Consensus 314 G~~~W~~~-~~~~~~---~-------~-sp~v~~g~l~v~~~-~G~l~~ld~~tG~~ 357 (394)
T PRK11138 314 GVELWSQS-DLLHRL---L-------T-APVLYNGYLVVGDS-EGYLHWINREDGRF 357 (394)
T ss_pred CcEEEccc-ccCCCc---c-------c-CCEEECCEEEEEeC-CCEEEEEECCCCCE
Confidence 347531 111100 0 0 11224788888643 57788899988763
No 62
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=93.63 E-value=8.3 Score=38.34 Aligned_cols=186 Identities=16% Similarity=0.098 Sum_probs=100.4
Q ss_pred eecCceEEEEecCCCCeeEEEEcCcccc--eecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEc
Q 045071 165 SSSGGLVCWVSDHAGAKTLILCNPVTGS--LSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHI 242 (453)
Q Consensus 165 ~s~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds 242 (453)
+..+|.|++... ...++.+|+.|++ |+.--+ ......+. ..+ -+|++...+ -....+|.
T Consensus 117 ~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~~~-~~~~ssP~---v~~---~~v~v~~~~---------g~l~ald~ 177 (394)
T PRK11138 117 TVAGGKVYIGSE---KGQVYALNAEDGEVAWQTKVA-GEALSRPV---VSD---GLVLVHTSN---------GMLQALNE 177 (394)
T ss_pred EEECCEEEEEcC---CCEEEEEECCCCCCcccccCC-CceecCCE---EEC---CEEEEECCC---------CEEEEEEc
Confidence 445677776543 2368889999886 643211 11111111 112 255554332 13466787
Q ss_pred ccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCC--cEEEe-ecCCccc----c--CCCceee
Q 045071 243 DAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNI-QAPMRRF----L--RSPSLLD 313 (453)
Q Consensus 243 ~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i-~~p~~~~----~--~~~~lv~ 313 (453)
++|. -.|+.-...+.........+++.+|.+|+.... ..+.++|..++ .|+.- ..|.... . ....-+.
T Consensus 178 ~tG~--~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~-g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v 254 (394)
T PRK11138 178 SDGA--VKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN-GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV 254 (394)
T ss_pred cCCC--EeeeecCCCCcccccCCCCCEEECCEEEEEcCC-CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE
Confidence 7765 678875433211111113456778888886654 68999999986 47542 1121100 0 0112234
Q ss_pred eCCeEEEEEEEeccCCCCCCcEEEEEeecC--CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEE
Q 045071 314 SNGKLILVAAVEKSKLNVPKSLRLWSLQAC--GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALL 391 (453)
Q Consensus 314 ~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~ 391 (453)
.+|.||+++.. . .++.+|.. ...|+.- ... ....+..++.||+... .+.+++
T Consensus 255 ~~~~vy~~~~~-g---------~l~ald~~tG~~~W~~~--~~~-------------~~~~~~~~~~vy~~~~-~g~l~a 308 (394)
T PRK11138 255 VGGVVYALAYN-G---------NLVALDLRSGQIVWKRE--YGS-------------VNDFAVDGGRIYLVDQ-NDRVYA 308 (394)
T ss_pred ECCEEEEEEcC-C---------eEEEEECCCCCEEEeec--CCC-------------ccCcEEECCEEEEEcC-CCeEEE
Confidence 57888875531 1 56677764 3457641 111 0012345888998653 578999
Q ss_pred EECCCCc
Q 045071 392 FDLCMKS 398 (453)
Q Consensus 392 Yd~~~~~ 398 (453)
+|.++.+
T Consensus 309 ld~~tG~ 315 (394)
T PRK11138 309 LDTRGGV 315 (394)
T ss_pred EECCCCc
Confidence 9998875
No 63
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=93.16 E-value=1.6 Score=42.61 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=71.1
Q ss_pred eeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccc--cccceeEE
Q 045071 163 PASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAV--KNLSSESF 240 (453)
Q Consensus 163 ~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~--~~~~~evy 240 (453)
+.+..+..|+..... ....|||+.|+.-..+|.+..+...+ +.+.++ -+||+........... .....|++
T Consensus 71 F~al~gskIv~~d~~---~~t~vyDt~t~av~~~P~l~~pk~~p-isv~VG---~~LY~m~~~~~~~~~~~~~~~~FE~l 143 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS---GRTLVYDTDTRAVATGPRLHSPKRCP-ISVSVG---DKLYAMDRSPFPEPAGRPDFPCFEAL 143 (342)
T ss_pred EEEecCCeEEEEcCC---CCeEEEECCCCeEeccCCCCCCCcce-EEEEeC---CeEEEeeccCccccccCccceeEEEe
Confidence 344445555554332 35899999999999999988776665 444443 2677765432111000 00044554
Q ss_pred Ecc------cCCCCCcccccCCCCCcccCC-----CCCeEEECCEEEEEecCCC--EEEEEECCCCcEEEe
Q 045071 241 HID------AGGFFSLWGTTSSLPRLCSLE-----SGRMVQVNGKFYCMNYSPF--SVLAYDISANAWFNI 298 (453)
Q Consensus 241 ds~------~~~~~~~W~~~~~~p~~~~~~-----~~~~v~~~G~lY~~~~~~~--~i~~yD~~~~~W~~i 298 (453)
... .......|+.+++.|...... -..-++++|.-.|++.... +-.+||.++.+|++.
T Consensus 144 ~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 144 VYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred ccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence 221 011115788877655322111 0112334665445533323 789999999999987
No 64
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=92.91 E-value=0.29 Score=48.53 Aligned_cols=153 Identities=15% Similarity=0.197 Sum_probs=89.1
Q ss_pred EcCcccceecCCCCCC--------CCCcceEEEEEcCCceEEEEEcc-CCCCcccccccceeEEEcccCCCCCcccccCC
Q 045071 186 CNPVTGSLSQLPPTLR--------PRLFPSIGLKVTPTAVDVTVAGD-DLISPYAVKNLSSESFHIDAGGFFSLWGTTSS 256 (453)
Q Consensus 186 ~NP~T~~w~~LP~~~~--------~r~~~~~~~~~~~~~ykvv~~g~-~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~ 256 (453)
--|.+-.|.++|+... +..+...-|+.++.+.-||+-|| ++..+ ......|..+. +.|..+..
T Consensus 234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~----l~DFW~Y~v~e----~~W~~iN~ 305 (723)
T KOG2437|consen 234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQD----LADFWAYSVKE----NQWTCINR 305 (723)
T ss_pred cccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchh----HHHHHhhcCCc----ceeEEeec
Confidence 3567888988887541 11122334666665556777665 32221 23457788887 89998643
Q ss_pred ---CCCcccCCCCCeEEECC--EEEEEecC-----------CCEEEEEECCCCcEEEeecCC-----ccccCCCceeeeC
Q 045071 257 ---LPRLCSLESGRMVQVNG--KFYCMNYS-----------PFSVLAYDISANAWFNIQAPM-----RRFLRSPSLLDSN 315 (453)
Q Consensus 257 ---~p~~~~~~~~~~v~~~G--~lY~~~~~-----------~~~i~~yD~~~~~W~~i~~p~-----~~~~~~~~lv~~~ 315 (453)
.|.. ...+.+|..-. ++|.++.. +..++.||..++.|..+.... |.-...+++++.+
T Consensus 306 ~t~~PG~--RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~ 383 (723)
T KOG2437|consen 306 DTEGPGA--RSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDS 383 (723)
T ss_pred CCCCCcc--hhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEec
Confidence 3321 12244555444 78877521 247999999999998874422 2222345666655
Q ss_pred Ce--EEEEEEEeccCCCCCCcEEEEEeecCCCCeEE
Q 045071 316 GK--LILVAAVEKSKLNVPKSLRLWSLQACGTLWAE 349 (453)
Q Consensus 316 g~--L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~ 349 (453)
.+ |||.||..-.. +...-=.+|.++.....|+.
T Consensus 384 ~k~~iyVfGGr~~~~-~e~~f~GLYaf~~~~~~w~~ 418 (723)
T KOG2437|consen 384 EKHMIYVFGGRILTC-NEPQFSGLYAFNCQCQTWKL 418 (723)
T ss_pred CcceEEEecCeeccC-CCccccceEEEecCCccHHH
Confidence 55 99999864221 00111256777776777863
No 65
>smart00284 OLF Olfactomedin-like domains.
Probab=92.57 E-value=5.5 Score=36.85 Aligned_cols=142 Identities=13% Similarity=0.204 Sum_probs=86.4
Q ss_pred CCCCCeEEECCEEEEEecCCCEEEEEECCCCcEEEee-cCCcc----------ccCCCceeeeCCeEEEEEEEeccCCCC
Q 045071 263 LESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQ-APMRR----------FLRSPSLLDSNGKLILVAAVEKSKLNV 331 (453)
Q Consensus 263 ~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~-~p~~~----------~~~~~~lv~~~g~L~vv~~~~~~~~~~ 331 (453)
+.....|+.+|.+|+.......|+.||+.++.-.... .|... ......+++.++-|.+|-..+++
T Consensus 74 ~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~---- 149 (255)
T smart00284 74 GQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN---- 149 (255)
T ss_pred cccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC----
Confidence 4445568999999998766678999999998764322 33221 11224567778888887765443
Q ss_pred CCcEEEEEeecCC----CCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc-C---CCeEEEEECCCCceEEcC
Q 045071 332 PKSLRLWSLQACG----TLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR-G---SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 332 ~~~i~vw~ld~~~----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~-~---~~~v~~Yd~~~~~W~~l~ 403 (453)
...|.|=+||+.+ ..|.. ..+..- ....|.. -+.+|+... . ..-..+||..+.+-. .+
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T--~~~k~s--------a~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~-~~ 215 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWIT--TYNKRS--------ASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEG-HL 215 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEc--CCCccc--------ccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccc-ee
Confidence 1356777888753 34543 333311 1123332 245776642 1 334688999988743 34
Q ss_pred CCCCcCCCCCCCCCCCCCceeEEEEeccc
Q 045071 404 RCPYVQANNCGGNYGDGEGELHGFAYEPR 432 (453)
Q Consensus 404 ~~p~~~~~~~~~~~~~~~~~~~~~~f~P~ 432 (453)
.+|+... -.....+.|.|+
T Consensus 216 ~i~f~n~----------y~~~s~l~YNP~ 234 (255)
T smart00284 216 DIPFENM----------YEYISMLDYNPN 234 (255)
T ss_pred eeeeccc----------cccceeceeCCC
Confidence 5776544 236778999997
No 66
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.12 E-value=12 Score=36.38 Aligned_cols=171 Identities=13% Similarity=0.174 Sum_probs=90.6
Q ss_pred EEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccC--CCCCcccCCCCCeEEE-C-CEEEEEecCCC
Q 045071 208 IGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTS--SLPRLCSLESGRMVQV-N-GKFYCMNYSPF 283 (453)
Q Consensus 208 ~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~--~~p~~~~~~~~~~v~~-~-G~lY~~~~~~~ 283 (453)
..+..+++.-.+++..- + ...+.+|+.+... ....... .++. .......++. + ..+|++.....
T Consensus 147 H~v~~~pdg~~v~v~dl-G-------~D~v~~~~~~~~~--~~l~~~~~~~~~~--G~GPRh~~f~pdg~~~Yv~~e~s~ 214 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDL-G-------ADRVYVYDIDDDT--GKLTPVDSIKVPP--GSGPRHLAFSPDGKYAYVVNELSN 214 (345)
T ss_dssp EEEEE-TTSSEEEEEET-T-------TTEEEEEEE-TTS---TEEEEEEEECST--TSSEEEEEE-TTSSEEEEEETTTT
T ss_pred eeEEECCCCCEEEEEec-C-------CCEEEEEEEeCCC--ceEEEeecccccc--CCCCcEEEEcCCcCEEEEecCCCC
Confidence 34556665445555432 1 1245777776621 2243321 1221 1111234554 3 36999988778
Q ss_pred EEEEEECC--CCcEEEeec--CCcccc----CCCceeee-CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecC
Q 045071 284 SVLAYDIS--ANAWFNIQA--PMRRFL----RSPSLLDS-NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMP 354 (453)
Q Consensus 284 ~i~~yD~~--~~~W~~i~~--p~~~~~----~~~~lv~~-~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp 354 (453)
.|.+|+.. ++.++.+.. ..|... ....++.. +|+.+.|.... ...|.+++++..++..+.+..++
T Consensus 215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLTLVQTVP 288 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEEEEEEEE
T ss_pred cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceEEEEEEe
Confidence 88888777 666665532 122111 11123332 45543334222 35789999987777777776654
Q ss_pred HHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEEC--CCCceEEcC
Q 045071 355 QQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDL--CMKSWQWIP 403 (453)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~--~~~~W~~l~ 403 (453)
.. . ...+.+.....|+.+|+.+...+.|.+|++ +++++..+.
T Consensus 289 ~~------G-~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 289 TG------G-KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ES------S-SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred CC------C-CCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 31 0 001234444578999998877888998865 577787664
No 67
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=90.65 E-value=14 Score=34.23 Aligned_cols=142 Identities=17% Similarity=0.277 Sum_probs=87.7
Q ss_pred CCCCCeEEECCEEEEEecCCCEEEEEECCCCcEE-EeecCCcccc----------CCCceeeeCCeEEEEEEEeccCCCC
Q 045071 263 LESGRMVQVNGKFYCMNYSPFSVLAYDISANAWF-NIQAPMRRFL----------RSPSLLDSNGKLILVAAVEKSKLNV 331 (453)
Q Consensus 263 ~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~-~i~~p~~~~~----------~~~~lv~~~g~L~vv~~~~~~~~~~ 331 (453)
+.+...|+.+|.+|.-......|+.||+.++.-. ....|..... ....+++.+.-|.+|-...++.
T Consensus 69 ~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~--- 145 (250)
T PF02191_consen 69 WQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNN--- 145 (250)
T ss_pred eccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCC---
Confidence 3445568899999998877789999999998766 4444433211 1234666778888887755432
Q ss_pred CCcEEEEEeecCC----CCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC----CCeEEEEECCCCceEEcC
Q 045071 332 PKSLRLWSLQACG----TLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG----SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 332 ~~~i~vw~ld~~~----~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~----~~~v~~Yd~~~~~W~~l~ 403 (453)
..+.|=++|+.+ ..|.. ..+..-. ...|.+ -+.+|..... ..-..+||..+++-.. +
T Consensus 146 -g~ivvskld~~tL~v~~tw~T--~~~k~~~--------~naFmv---CGvLY~~~s~~~~~~~I~yafDt~t~~~~~-~ 210 (250)
T PF02191_consen 146 -GNIVVSKLDPETLSVEQTWNT--SYPKRSA--------GNAFMV---CGVLYATDSYDTRDTEIFYAFDTYTGKEED-V 210 (250)
T ss_pred -CcEEEEeeCcccCceEEEEEe--ccCchhh--------cceeeE---eeEEEEEEECCCCCcEEEEEEECCCCceec-e
Confidence 246777788753 34642 3433211 122332 2446665432 2345889999887653 4
Q ss_pred CCCCcCCCCCCCCCCCCCceeEEEEeccc
Q 045071 404 RCPYVQANNCGGNYGDGEGELHGFAYEPR 432 (453)
Q Consensus 404 ~~p~~~~~~~~~~~~~~~~~~~~~~f~P~ 432 (453)
.+++... ......+.|.|+
T Consensus 211 ~i~f~~~----------~~~~~~l~YNP~ 229 (250)
T PF02191_consen 211 SIPFPNP----------YGNISMLSYNPR 229 (250)
T ss_pred eeeeccc----------cCceEeeeECCC
Confidence 5666543 235778999997
No 68
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.30 E-value=15 Score=34.28 Aligned_cols=124 Identities=13% Similarity=0.163 Sum_probs=69.9
Q ss_pred CeeeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEE
Q 045071 161 FSPASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF 240 (453)
Q Consensus 161 ~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evy 240 (453)
.-+++.-+|-|.+..-. .+-+...||++..-.++|.+.....-. =.+-.++- -++-.- .- ..-+...|
T Consensus 192 yGi~atpdGsvwyasla--gnaiaridp~~~~aev~p~P~~~~~gs-Rriwsdpi-g~~wit-tw-------g~g~l~rf 259 (353)
T COG4257 192 YGICATPDGSVWYASLA--GNAIARIDPFAGHAEVVPQPNALKAGS-RRIWSDPI-GRAWIT-TW-------GTGSLHRF 259 (353)
T ss_pred cceEECCCCcEEEEecc--ccceEEcccccCCcceecCCCcccccc-cccccCcc-CcEEEe-cc-------CCceeeEe
Confidence 34667777888775321 235778999999777777654311100 01222221 111111 10 12345788
Q ss_pred EcccCCCCCcccccCCCCCcccCCCCCeEEEC--CEEEEEecCCCEEEEEECCCCcEEEeecCCc
Q 045071 241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVN--GKFYCMNYSPFSVLAYDISANAWFNIQAPMR 303 (453)
Q Consensus 241 ds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~--G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~ 303 (453)
++.. .+|.+.. +|..-. . ....++| |.+..-....+.|..||+++.++++++.|.+
T Consensus 260 dPs~----~sW~eyp-LPgs~a-r-pys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 260 DPSV----TSWIEYP-LPGSKA-R-PYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred Cccc----ccceeee-CCCCCC-C-cceeeeccCCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 8888 7898753 332111 1 2234554 5666555556789999999999999866654
No 69
>PLN02772 guanylate kinase
Probab=87.50 E-value=3.5 Score=40.63 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=46.4
Q ss_pred CCeEEECCEEEEEecCC------CEEEEEECCCCcEEEeec--CCccccCCCce-eeeCCeEEEEEEEeccCCCCCCcEE
Q 045071 266 GRMVQVNGKFYCMNYSP------FSVLAYDISANAWFNIQA--PMRRFLRSPSL-LDSNGKLILVAAVEKSKLNVPKSLR 336 (453)
Q Consensus 266 ~~~v~~~G~lY~~~~~~------~~i~~yD~~~~~W~~i~~--p~~~~~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~ 336 (453)
..++.+++++|++++.. ..+.+||..+.+|..... +.|..+..+.. +.-+++|+++...... .-.
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~------~~~ 101 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP------DDS 101 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC------ccc
Confidence 45788999999997531 368999999999987532 23332333333 4458999998853321 126
Q ss_pred EEEeec
Q 045071 337 LWSLQA 342 (453)
Q Consensus 337 vw~ld~ 342 (453)
+|-|+-
T Consensus 102 ~w~l~~ 107 (398)
T PLN02772 102 IWFLEV 107 (398)
T ss_pred eEEEEc
Confidence 777664
No 70
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.73 E-value=27 Score=32.50 Aligned_cols=174 Identities=14% Similarity=0.134 Sum_probs=88.9
Q ss_pred cceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCcE-EEeecCCccccCCCceee
Q 045071 235 LSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAW-FNIQAPMRRFLRSPSLLD 313 (453)
Q Consensus 235 ~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W-~~i~~p~~~~~~~~~lv~ 313 (453)
.....|+.++ ++=.....+|. .......+.+++++|.++......+.||.++=+- ... +.+. ..-.|..
T Consensus 68 S~l~~~d~~t----g~~~~~~~l~~--~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~--~y~~--EGWGLt~ 137 (264)
T PF05096_consen 68 SSLRKVDLET----GKVLQSVPLPP--RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF--PYPG--EGWGLTS 137 (264)
T ss_dssp EEEEEEETTT----SSEEEEEE-TT--T--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE--E-SS--S--EEEE
T ss_pred EEEEEEECCC----CcEEEEEECCc--cccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE--ecCC--cceEEEc
Confidence 5567888888 44333344553 2222345778999999999888999999986322 222 2221 3335666
Q ss_pred eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEE
Q 045071 314 SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFD 393 (453)
Q Consensus 314 ~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd 393 (453)
.+.+|++-.+.. +++.+|+. ..+++.++.... .-.....-..++++ ++.||.-....+.|+.-|
T Consensus 138 dg~~Li~SDGS~----------~L~~~dP~--~f~~~~~i~V~~--~g~pv~~LNELE~i--~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 138 DGKRLIMSDGSS----------RLYFLDPE--TFKEVRTIQVTD--NGRPVSNLNELEYI--NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp CSSCEEEE-SSS----------EEEEE-TT--T-SEEEEEE-EE--TTEE---EEEEEEE--TTEEEEEETTSSEEEEEE
T ss_pred CCCEEEEECCcc----------ceEEECCc--ccceEEEEEEEE--CCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEe
Confidence 666666643311 78888874 344444432210 00000001134553 788888776788999999
Q ss_pred CCCCceEEcCCCC-CcCCCCCCCCCCCCCceeEEEEeccccC
Q 045071 394 LCMKSWQWIPRCP-YVQANNCGGNYGDGEGELHGFAYEPRLA 434 (453)
Q Consensus 394 ~~~~~W~~l~~~p-~~~~~~~~~~~~~~~~~~~~~~f~P~l~ 434 (453)
+++++-...=++. ..+..............+.|.||.|.-+
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 9998754321111 1000000000000124688999988644
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.62 E-value=34 Score=33.60 Aligned_cols=104 Identities=19% Similarity=0.211 Sum_probs=57.4
Q ss_pred ecCceEEEEecCCCCeeEEEEcCcccc--eec-CCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEc
Q 045071 166 SSGGLVCWVSDHAGAKTLILCNPVTGS--LSQ-LPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHI 242 (453)
Q Consensus 166 s~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~-LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds 242 (453)
..+|.|++.... ..++.+|+.|++ |+. ++.. ... +..++ .-+|++...+ -....+|.
T Consensus 63 v~~~~v~v~~~~---g~v~a~d~~tG~~~W~~~~~~~----~~~--~p~v~--~~~v~v~~~~---------g~l~ald~ 122 (377)
T TIGR03300 63 VAGGKVYAADAD---GTVVALDAETGKRLWRVDLDER----LSG--GVGAD--GGLVFVGTEK---------GEVIALDA 122 (377)
T ss_pred EECCEEEEECCC---CeEEEEEccCCcEeeeecCCCC----ccc--ceEEc--CCEEEEEcCC---------CEEEEEEC
Confidence 346777765432 368888998876 542 2221 111 12222 1255554332 12356676
Q ss_pred ccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCC--cEEE
Q 045071 243 DAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFN 297 (453)
Q Consensus 243 ~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~ 297 (453)
++|. -.|+....-. .. ..+++.++.+|+.... ..+.++|.+++ .|+.
T Consensus 123 ~tG~--~~W~~~~~~~----~~-~~p~v~~~~v~v~~~~-g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 123 EDGK--ELWRAKLSSE----VL-SPPLVANGLVVVRTND-GRLTALDAATGERLWTY 171 (377)
T ss_pred CCCc--EeeeeccCce----ee-cCCEEECCEEEEECCC-CeEEEEEcCCCceeeEE
Confidence 6655 5787532111 11 2346678888886554 67999999875 4754
No 72
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=86.03 E-value=14 Score=35.48 Aligned_cols=106 Identities=8% Similarity=0.055 Sum_probs=59.6
Q ss_pred EEEEEecCCCEEEEEECCC-CcEEEeecCCccccCCC-cee-eeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEE
Q 045071 274 KFYCMNYSPFSVLAYDISA-NAWFNIQAPMRRFLRSP-SLL-DSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEI 350 (453)
Q Consensus 274 ~lY~~~~~~~~i~~yD~~~-~~W~~i~~p~~~~~~~~-~lv-~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v 350 (453)
.+|+.......|..||+.+ ++++.+..- +. ...+ .++ .-+|+.+.++... ...+.+|.++ +++.++.+
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~-~~-~~~~~~l~~spd~~~lyv~~~~------~~~i~~~~~~-~~g~l~~~ 73 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVV-DV-PGQVQPMVISPDKRHLYVGVRP------EFRVLSYRIA-DDGALTFA 73 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEE-ec-CCCCccEEECCCCCEEEEEECC------CCcEEEEEEC-CCCceEEe
Confidence 4677766667899999964 566655321 11 1222 232 2355544444322 1356788887 35667665
Q ss_pred eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCC
Q 045071 351 ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCM 396 (453)
Q Consensus 351 ~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~ 396 (453)
...+.. . ....+.....|..+|...+..+.+.+||+++
T Consensus 74 ~~~~~~------~--~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 74 AESPLP------G--SPTHISTDHQGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred eeecCC------C--CceEEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence 554320 0 0012222345778888877778899999874
No 73
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.24 E-value=44 Score=32.79 Aligned_cols=210 Identities=18% Similarity=0.191 Sum_probs=104.6
Q ss_pred ceeeeCCCCC--eEe-ccCCCCCCCCeeeeecCceEEEEecCCCCeeEEEEcCcccc--eecCCCCCCC-CCcceEEEEE
Q 045071 139 GYLFDPHELS--WYR-ISFALVPSEFSPASSSGGLVCWVSDHAGAKTLILCNPVTGS--LSQLPPTLRP-RLFPSIGLKV 212 (453)
Q Consensus 139 ~~~fdp~~~~--w~~-l~l~~lp~~~~~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~LP~~~~~-r~~~~~~~~~ 212 (453)
..+||+.+.+ |.. +.-.. ....+..++.+++... ...++.+|+.|++ |+.- +... ...+ ...
T Consensus 77 v~a~d~~tG~~~W~~~~~~~~----~~~p~v~~~~v~v~~~---~g~l~ald~~tG~~~W~~~--~~~~~~~~p---~v~ 144 (377)
T TIGR03300 77 VVALDAETGKRLWRVDLDERL----SGGVGADGGLVFVGTE---KGEVIALDAEDGKELWRAK--LSSEVLSPP---LVA 144 (377)
T ss_pred EEEEEccCCcEeeeecCCCCc----ccceEEcCCEEEEEcC---CCEEEEEECCCCcEeeeec--cCceeecCC---EEE
Confidence 3577876554 642 22111 1123445777776543 2378889998876 5432 1111 0011 111
Q ss_pred cCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCC
Q 045071 213 TPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISA 292 (453)
Q Consensus 213 ~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~ 292 (453)
+ .+|++...+ -....+|.++|. -.|+.-...+.........+++.+|.+|+.... ..+.++|+++
T Consensus 145 ~---~~v~v~~~~---------g~l~a~d~~tG~--~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~-g~v~ald~~t 209 (377)
T TIGR03300 145 N---GLVVVRTND---------GRLTALDAATGE--RLWTYSRVTPALTLRGSASPVIADGGVLVGFAG-GKLVALDLQT 209 (377)
T ss_pred C---CEEEEECCC---------CeEEEEEcCCCc--eeeEEccCCCceeecCCCCCEEECCEEEEECCC-CEEEEEEccC
Confidence 1 255554332 123566776654 578754322211011113457778888765443 5899999987
Q ss_pred C--cEEEe-ecCCccc----c--CCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecC--CCCeEEEeecCHHHHHHh
Q 045071 293 N--AWFNI-QAPMRRF----L--RSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQAC--GTLWAEIERMPQQLYAQF 361 (453)
Q Consensus 293 ~--~W~~i-~~p~~~~----~--~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~~v~~mp~~~~~~~ 361 (453)
+ .|+.- ..|.... . .....+..++.+|+.+.. . .++.+|.. ...|..- .+.
T Consensus 210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-g---------~l~a~d~~tG~~~W~~~--~~~------ 271 (377)
T TIGR03300 210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-G---------RVAALDLRSGRVLWKRD--ASS------ 271 (377)
T ss_pred CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-C---------EEEEEECCCCcEEEeec--cCC------
Confidence 6 47532 1121100 0 011223357788775431 1 45555543 3457542 110
Q ss_pred hcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCc--eEE
Q 045071 362 AEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKS--WQW 401 (453)
Q Consensus 362 ~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~--W~~ 401 (453)
... .+..++.||+.. ..+.+.++|..+.+ |+.
T Consensus 272 -----~~~--p~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 272 -----YQG--PAVDDNRLYVTD-ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred -----ccC--ceEeCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence 001 123578888864 35789999998764 543
No 74
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=84.09 E-value=27 Score=34.70 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=59.9
Q ss_pred CCE-EEEEecCCCEEEEEECCCCcEEEeecCCccccCCC--ceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeE
Q 045071 272 NGK-FYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSP--SLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWA 348 (453)
Q Consensus 272 ~G~-lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~--~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~ 348 (453)
+|. .-+..+....+++||+.+.+..++..|........ .-|.-++...++.|... .|..|.-.+++|.
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G---------~I~lLhakT~eli 338 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG---------HIHLLHAKTKELI 338 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCc---------eEEeehhhhhhhh
Confidence 555 55555555789999999999988855432111111 22344455555444322 4555555567775
Q ss_pred EEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCC
Q 045071 349 EIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMK 397 (453)
Q Consensus 349 ~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~ 397 (453)
--..|+..+ ..+....++..|++. ...+.|++||+..+
T Consensus 339 ~s~KieG~v----------~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 339 TSFKIEGVV----------SDFTFSSDSKELLAS-GGTGEVYVWNLRQN 376 (514)
T ss_pred heeeeccEE----------eeEEEecCCcEEEEE-cCCceEEEEecCCc
Confidence 444444311 123233455556655 44679999999886
No 75
>PF13854 Kelch_5: Kelch motif
Probab=82.85 E-value=2.2 Score=27.22 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=23.4
Q ss_pred cCCCceeeeCCeEEEEEEEec-cCCCCCCcEEEEEeecC
Q 045071 306 LRSPSLLDSNGKLILVAAVEK-SKLNVPKSLRLWSLQAC 343 (453)
Q Consensus 306 ~~~~~lv~~~g~L~vv~~~~~-~~~~~~~~i~vw~ld~~ 343 (453)
+..+..+..+++||++|+... .. ...=++|.|+..
T Consensus 5 R~~hs~~~~~~~iyi~GG~~~~~~---~~~~d~~~l~l~ 40 (42)
T PF13854_consen 5 RYGHSAVVVGNNIYIFGGYSGNNN---SYSNDLYVLDLP 40 (42)
T ss_pred ccceEEEEECCEEEEEcCccCCCC---CEECcEEEEECC
Confidence 455667788999999999763 11 111268888753
No 76
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.71 E-value=32 Score=35.77 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=62.6
Q ss_pred CeEEECCEEEEEecCCCEEEEEECCCC--cEEEee-cCCccc------cCCCceeeeCCeEEEEEEEeccCCCCCCcEEE
Q 045071 267 RMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNIQ-APMRRF------LRSPSLLDSNGKLILVAAVEKSKLNVPKSLRL 337 (453)
Q Consensus 267 ~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i~-~p~~~~------~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~v 337 (453)
..++.+|.+|+.+.. ..|.++|..++ .|+.-. .+.... .....++..+++||+... +. .+
T Consensus 64 tPvv~~g~vyv~s~~-g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~--dg--------~l 132 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL--DA--------RL 132 (527)
T ss_pred CCEEECCEEEEECCC-CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC--CC--------EE
Confidence 468889999997655 47999999975 586532 121100 001123445778776332 11 67
Q ss_pred EEeecC--CCCeEEE-eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC-----CCeEEEEECCCCceEE
Q 045071 338 WSLQAC--GTLWAEI-ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG-----SDKALLFDLCMKSWQW 401 (453)
Q Consensus 338 w~ld~~--~~~W~~v-~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-----~~~v~~Yd~~~~~W~~ 401 (453)
+.||.. +..|+.- ..+... + .. .. .-+..++.||+.... .+.+..||.++.+-.|
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~----~-~~---ts-sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAG----Y-TI---TA-APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEEECCCCCEEeeccccccccc----c-cc---cC-CcEEECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 777764 3457532 111100 0 00 00 112246778775421 4689999999986433
No 77
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=82.56 E-value=49 Score=32.03 Aligned_cols=117 Identities=12% Similarity=0.180 Sum_probs=60.6
Q ss_pred CCEEEEEecCCCEEEEEECCCCcEEEee-cCCc------ccc--CCCceeee---CCeEEEEEEEeccCCCCCCcEEEEE
Q 045071 272 NGKFYCMNYSPFSVLAYDISANAWFNIQ-APMR------RFL--RSPSLLDS---NGKLILVAAVEKSKLNVPKSLRLWS 339 (453)
Q Consensus 272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~-~p~~------~~~--~~~~lv~~---~g~L~vv~~~~~~~~~~~~~i~vw~ 339 (453)
+|.+||+++. ..|...|+..+.-.... .... ... ...+++++ .|+||+........-+....-+||+
T Consensus 195 ~~~~~F~Sy~-G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv 273 (342)
T PF06433_consen 195 GGRLYFVSYE-GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWV 273 (342)
T ss_dssp TTEEEEEBTT-SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEE
T ss_pred CCeEEEEecC-CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEE
Confidence 3678888776 57888888876422111 0110 011 12345544 5899986653332212233569999
Q ss_pred eecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCC-EEEEEEcCCCeEEEEECCCCce
Q 045071 340 LQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGE-FIVIVIRGSDKALLFDLCMKSW 399 (453)
Q Consensus 340 ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~-~I~l~~~~~~~v~~Yd~~~~~W 399 (453)
+|..++ +.|.+++-+- ...++.+...+. ++|........+.+||..+.+-
T Consensus 274 ~D~~t~--krv~Ri~l~~--------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 274 YDLKTH--KRVARIPLEH--------PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EETTTT--EEEEEEEEEE--------EESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EECCCC--eEEEEEeCCC--------ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 997655 3455554210 001233322233 5665555567899999999764
No 78
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=81.52 E-value=1e+02 Score=35.13 Aligned_cols=121 Identities=15% Similarity=0.141 Sum_probs=62.1
Q ss_pred CCEEEEEecCCCEEEEEECCCCcEEEeecCC---------c--cccCCC-cee-eeCC-eEEEEEEEeccCCCCCCcEEE
Q 045071 272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPM---------R--RFLRSP-SLL-DSNG-KLILVAAVEKSKLNVPKSLRL 337 (453)
Q Consensus 272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~---------~--~~~~~~-~lv-~~~g-~L~vv~~~~~~~~~~~~~i~v 337 (453)
+|.+|+.....+.|..||..++....+.... . .....+ .++ .-+| .||++.... ..|++
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n-------~~Irv 766 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES-------SSIRA 766 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC-------CeEEE
Confidence 5889998776688999999887665432110 0 001122 232 2344 488755321 24455
Q ss_pred EEeecCCCCeEEEee----cCHHHHHHhhccc---------CCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEEcC
Q 045071 338 WSLQACGTLWAEIER----MPQQLYAQFAEIE---------AGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 338 w~ld~~~~~W~~v~~----mp~~~~~~~~~~~---------~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~ 403 (453)
|.++ ++.-..+.. .+..++ .+.... ...++. +..++.||+.....++|.+||.+++....+.
T Consensus 767 ~D~~--tg~~~~~~gg~~~~~~~l~-~fG~~dG~g~~~~l~~P~Gva-vd~dG~LYVADs~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 767 LDLK--TGGSRLLAGGDPTFSDNLF-KFGDHDGVGSEVLLQHPLGVL-CAKDGQIYVADSYNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred EECC--CCcEEEEEecccccCcccc-cccCCCCchhhhhccCCceee-EeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence 5444 333221111 111110 111000 011222 2234468998877889999999998876654
No 79
>PLN02772 guanylate kinase
Probab=81.26 E-value=9.4 Score=37.70 Aligned_cols=76 Identities=12% Similarity=0.216 Sum_probs=50.3
Q ss_pred CceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEe---ecCHHHHHHhhcccCCCc-EEEEeeCCEEEEEEc
Q 045071 309 PSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIE---RMPQQLYAQFAEIEAGNG-FDTIGHGEFIVIVIR 384 (453)
Q Consensus 309 ~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~---~mp~~~~~~~~~~~~~~~-~~~~~~g~~I~l~~~ 384 (453)
...++.++++||+|+..+.. ..+..||.+|..+..|+... ..|. .+.+ -.|+-.+++|++...
T Consensus 28 ~tav~igdk~yv~GG~~d~~---~~~~~v~i~D~~t~~W~~P~V~G~~P~----------~r~GhSa~v~~~~rilv~~~ 94 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGN---TLSIGVQILDKITNNWVSPIVLGTGPK----------PCKGYSAVVLNKDRILVIKK 94 (398)
T ss_pred ceeEEECCEEEEEcccCCCc---cccceEEEEECCCCcEecccccCCCCC----------CCCcceEEEECCceEEEEeC
Confidence 35678999999999854421 23578999999999998633 2332 1122 234455788888765
Q ss_pred C---CCeEEEEECCCC
Q 045071 385 G---SDKALLFDLCMK 397 (453)
Q Consensus 385 ~---~~~v~~Yd~~~~ 397 (453)
. ...++...+.|.
T Consensus 95 ~~~~~~~~w~l~~~t~ 110 (398)
T PLN02772 95 GSAPDDSIWFLEVDTP 110 (398)
T ss_pred CCCCccceEEEEcCCH
Confidence 3 456777777763
No 80
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.05 E-value=41 Score=30.19 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=74.8
Q ss_pred eeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCC--cEEEeecCCccccCCCceeee
Q 045071 237 SESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFNIQAPMRRFLRSPSLLDS 314 (453)
Q Consensus 237 ~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~i~~p~~~~~~~~~lv~~ 314 (453)
...+|..+|. ..|+.--.-.. .......+.-+|.+|+.... ..|.+||..++ .|+.- .+-+ .... .+..
T Consensus 5 l~~~d~~tG~--~~W~~~~~~~~--~~~~~~~~~~~~~v~~~~~~-~~l~~~d~~tG~~~W~~~-~~~~--~~~~-~~~~ 75 (238)
T PF13360_consen 5 LSALDPRTGK--ELWSYDLGPGI--GGPVATAVPDGGRVYVASGD-GNLYALDAKTGKVLWRFD-LPGP--ISGA-PVVD 75 (238)
T ss_dssp EEEEETTTTE--EEEEEECSSSC--SSEEETEEEETTEEEEEETT-SEEEEEETTTSEEEEEEE-CSSC--GGSG-EEEE
T ss_pred EEEEECCCCC--EEEEEECCCCC--CCccceEEEeCCEEEEEcCC-CEEEEEECCCCCEEEEee-cccc--ccce-eeec
Confidence 3566776655 67876221000 00001134478999988654 79999999776 46543 2221 1222 3567
Q ss_pred CCeEEEEEEEeccCCCCCCcEEEEEeecC--CCCeE-EEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEE
Q 045071 315 NGKLILVAAVEKSKLNVPKSLRLWSLQAC--GTLWA-EIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALL 391 (453)
Q Consensus 315 ~g~L~vv~~~~~~~~~~~~~i~vw~ld~~--~~~W~-~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~ 391 (453)
++++|+.. .++ .++.+|.. ...|+ ....-+..- + .........++.+++... .+.+++
T Consensus 76 ~~~v~v~~--~~~--------~l~~~d~~tG~~~W~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~-~g~l~~ 136 (238)
T PF13360_consen 76 GGRVYVGT--SDG--------SLYALDAKTGKVLWSIYLTSSPPAG---V-----RSSSSPAVDGDRLYVGTS-SGKLVA 136 (238)
T ss_dssp TTEEEEEE--TTS--------EEEEEETTTSCEEEEEEE-SSCTCS---T-----B--SEEEEETTEEEEEET-CSEEEE
T ss_pred cccccccc--cee--------eeEecccCCcceeeeeccccccccc---c-----ccccCceEecCEEEEEec-cCcEEE
Confidence 88888755 111 67777743 45687 333322210 0 011222334888888654 689999
Q ss_pred EECCCCce
Q 045071 392 FDLCMKSW 399 (453)
Q Consensus 392 Yd~~~~~W 399 (453)
+|+++++-
T Consensus 137 ~d~~tG~~ 144 (238)
T PF13360_consen 137 LDPKTGKL 144 (238)
T ss_dssp EETTTTEE
T ss_pred EecCCCcE
Confidence 99998764
No 81
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.09 E-value=21 Score=38.84 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=24.7
Q ss_pred CCeEEECCEEEEEecCCCEEEEEECCCC--cEEE
Q 045071 266 GRMVQVNGKFYCMNYSPFSVLAYDISAN--AWFN 297 (453)
Q Consensus 266 ~~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~ 297 (453)
...++++|++|+.+.. ..|+++|.+++ .|+.
T Consensus 188 ~TPlvvgg~lYv~t~~-~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH-NKVIALDAATGKEKWKF 220 (764)
T ss_pred cCCEEECCEEEEECCC-CeEEEEECCCCcEEEEE
Confidence 3468899999998765 68999999975 5865
No 82
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=79.70 E-value=64 Score=31.57 Aligned_cols=228 Identities=11% Similarity=0.091 Sum_probs=111.1
Q ss_pred ceeeeCCCCCe-EeccCCCCCC------CCeeeeecCc-eEEEEecCCCCeeEEEEcCcccceec-CCCCCCCCCcceEE
Q 045071 139 GYLFDPHELSW-YRISFALVPS------EFSPASSSGG-LVCWVSDHAGAKTLILCNPVTGSLSQ-LPPTLRPRLFPSIG 209 (453)
Q Consensus 139 ~~~fdp~~~~w-~~l~l~~lp~------~~~~~~s~~G-ll~~~~~~~~~~~~~v~NP~T~~w~~-LP~~~~~r~~~~~~ 209 (453)
...||+.+.+- .++++|.-|+ .....-+.+| ++++.. ......+.|.|..+++... +|- +. +. ..
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~~p~~~V~VvD~~~~kvv~ei~v-p~--~~--~v 152 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-FSPSPAVGVVDLEGKAFVRMMDV-PD--CY--HI 152 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEec-CCCCCEEEEEECCCCcEEEEEeC-CC--Cc--EE
Confidence 35789887764 4677665544 1123345555 455443 3324578899999998644 443 21 11 12
Q ss_pred EEEcCCceEEEEEccCCC-----CcccccccceeEEEcccCCCCCcccccCCCCCcccCCCCC-eEEECCEEEEEecCCC
Q 045071 210 LKVTPTAVDVTVAGDDLI-----SPYAVKNLSSESFHIDAGGFFSLWGTTSSLPRLCSLESGR-MVQVNGKFYCMNYSPF 283 (453)
Q Consensus 210 ~~~~~~~ykvv~~g~~~~-----~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~-~v~~~G~lY~~~~~~~ 283 (453)
+......+-+.+..+... ........+..+|+.+. . | ..... ..-.+|+.+|++.. .
T Consensus 153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~----~--------~----v~~rP~~~~~dg~~~~vs~e-G 215 (352)
T TIGR02658 153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPED----E--------Y----LINHPAYSNKSGRLVWPTYT-G 215 (352)
T ss_pred EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCc----c--------c----cccCCceEcCCCcEEEEecC-C
Confidence 222233444444433200 00000011112222211 0 0 00011 12236888888776 7
Q ss_pred EEEEEECCCC------cEEEeecCCc-cccC--CCceee---eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEe
Q 045071 284 SVLAYDISAN------AWFNIQAPMR-RFLR--SPSLLD---SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIE 351 (453)
Q Consensus 284 ~i~~yD~~~~------~W~~i~~p~~-~~~~--~~~lv~---~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~ 351 (453)
.|...|+.+. .|..+....+ ...+ ..+.++ -+++||+........-+....=+||.+|. .+++.+.
T Consensus 216 ~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~--~t~kvi~ 293 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA--KTGKRLR 293 (352)
T ss_pred eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC--CCCeEEE
Confidence 8888886443 3544422111 1111 112233 35778874421110000011128999994 6777777
Q ss_pred ecCHHHHHHhhcccCCCcEEEEeeCC-EEEEEEcCCCeEEEEECCCCce
Q 045071 352 RMPQQLYAQFAEIEAGNGFDTIGHGE-FIVIVIRGSDKALLFDLCMKSW 399 (453)
Q Consensus 352 ~mp~~~~~~~~~~~~~~~~~~~~~g~-~I~l~~~~~~~v~~Yd~~~~~W 399 (453)
+++... ....+.....+. .+|..+...+.+.++|..+.+-
T Consensus 294 ~i~vG~--------~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 294 KIELGH--------EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred EEeCCC--------ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 776411 012344445677 8888776678899999988753
No 83
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=78.67 E-value=36 Score=31.48 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=49.6
Q ss_pred EEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCce-eeeCCe-EEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEe
Q 045071 274 KFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSL-LDSNGK-LILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIE 351 (453)
Q Consensus 274 ~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~l-v~~~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~ 351 (453)
.+|+.......+..||+.+++-... ..... ....+ +.-+|+ ||+.+. .+ ..+.+|.++ +.+...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~-~~~~~--~~~~l~~~~dg~~l~~~~~-~~------~~v~~~d~~--~~~~~~-- 67 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRT-FPVGQ--RPRGITLSKDGKLLYVCAS-DS------DTIQVIDLA--TGEVIG-- 67 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEE-EECCC--CCCceEECCCCCEEEEEEC-CC------CeEEEEECC--CCcEEE--
Confidence 3455555456888899887654322 11111 11122 223555 445442 11 245666544 333322
Q ss_pred ecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCc
Q 045071 352 RMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKS 398 (453)
Q Consensus 352 ~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~ 398 (453)
.++.. .....+.+...++.+|+.....+.+.+||+.+.+
T Consensus 68 ~~~~~--------~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~ 106 (300)
T TIGR03866 68 TLPSG--------PDPELFALHPNGKILYIANEDDNLVTVIDIETRK 106 (300)
T ss_pred eccCC--------CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence 22210 0011222334566777765545788889988754
No 84
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=78.49 E-value=23 Score=32.42 Aligned_cols=165 Identities=16% Similarity=0.179 Sum_probs=82.0
Q ss_pred eeeeCCCCCeEecc-CCCC--CCC--CeeeeecCceEEEEecCCC----C--eeEEEEcCcccceecCCCCCCCCCcceE
Q 045071 140 YLFDPHELSWYRIS-FALV--PSE--FSPASSSGGLVCWVSDHAG----A--KTLILCNPVTGSLSQLPPTLRPRLFPSI 208 (453)
Q Consensus 140 ~~fdp~~~~w~~l~-l~~l--p~~--~~~~~s~~Gll~~~~~~~~----~--~~~~v~NP~T~~w~~LP~~~~~r~~~~~ 208 (453)
..+|+.++++..+. .+.- +.. -.+....+|-+++...... . ..++.++|- ++...+..- ....-
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~----~~~pN 137 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG----LGFPN 137 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE----ESSEE
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC----ccccc
Confidence 45688887776554 2111 111 1244555677777643211 1 468888988 544333211 11123
Q ss_pred EEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccc---cCCCCCcccCCCCCeEEE--CCEEEEEecCCC
Q 045071 209 GLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGT---TSSLPRLCSLESGRMVQV--NGKFYCMNYSPF 283 (453)
Q Consensus 209 ~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~---~~~~p~~~~~~~~~~v~~--~G~lY~~~~~~~ 283 (453)
|+.+++..-.+|++... ......|+.+... ..+.. ...++... ...+++.+ +|.||+......
T Consensus 138 Gi~~s~dg~~lyv~ds~--------~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~--g~pDG~~vD~~G~l~va~~~~~ 205 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSF--------NGRIWRFDLDADG--GELSNRRVFIDFPGGP--GYPDGLAVDSDGNLWVADWGGG 205 (246)
T ss_dssp EEEEETTSSEEEEEETT--------TTEEEEEEEETTT--CCEEEEEEEEE-SSSS--CEEEEEEEBTTS-EEEEEETTT
T ss_pred ceEECCcchheeecccc--------cceeEEEeccccc--cceeeeeeEEEcCCCC--cCCCcceEcCCCCEEEEEcCCC
Confidence 66666655566665432 1234666665411 22321 11222111 00233444 589998877668
Q ss_pred EEEEEECCCCcEEEeecCCccccCCCcee-eeCCeEEEEE
Q 045071 284 SVLAYDISANAWFNIQAPMRRFLRSPSLL-DSNGKLILVA 322 (453)
Q Consensus 284 ~i~~yD~~~~~W~~i~~p~~~~~~~~~lv-~~~g~L~vv~ 322 (453)
.|.+||++......+..|.+. ..++.+. .-.++|||..
T Consensus 206 ~I~~~~p~G~~~~~i~~p~~~-~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 206 RIVVFDPDGKLLREIELPVPR-PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEETTSCEEEEEE-SSSS-EEEEEEESTTSSEEEEEE
T ss_pred EEEEECCCccEEEEEcCCCCC-EEEEEEECCCCCEEEEEe
Confidence 999999997777778777332 1121221 2346788754
No 85
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=78.28 E-value=22 Score=36.80 Aligned_cols=130 Identities=14% Similarity=0.265 Sum_probs=67.7
Q ss_pred CEEEEEECCCCcEEEeecCCccccCCCce-eeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCC--CeEEE-eecCHHHH
Q 045071 283 FSVLAYDISANAWFNIQAPMRRFLRSPSL-LDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGT--LWAEI-ERMPQQLY 358 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~i~~p~~~~~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~--~W~~v-~~mp~~~~ 358 (453)
..|.+|++.+.+=.....+-|...+...+ .+|+|++.+|.++.+.. .+.+.+|.-+.-.. --+.+ ..-|..+.
T Consensus 742 g~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S---eRQv~~Y~Aq~l~~~pl~t~~lDvaps~Lv 818 (1012)
T KOG1445|consen 742 GTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS---ERQVQMYDAQTLDLRPLYTQVLDVAPSPLV 818 (1012)
T ss_pred ceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc---hhhhhhhhhhhccCCcceeeeecccCcccc
Confidence 57889999886543333444444444444 58999999999876542 12344443221110 11111 11111110
Q ss_pred HHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEEcCCCCCcCCCCCCCCCCCCCceeEEEEeccccCCch
Q 045071 359 AQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATPV 437 (453)
Q Consensus 359 ~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~f~P~l~~~~ 437 (453)
.+ +--..+.+++.+.+...|.+|++--.+=-.+|-.++... ....|++|-+.+.--+
T Consensus 819 ----------P~-YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp-----------~~hqGl~fl~K~~CdV 875 (1012)
T KOG1445|consen 819 ----------PH-YDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSP-----------VGHQGLAFLQKLKCDV 875 (1012)
T ss_pred ----------cc-ccCCCceEEEecCCCceEEEEEecCCCceeeecccccCC-----------Ccccceeeecccccce
Confidence 00 111345677777777888888887655433443333221 1345777777666543
No 86
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.54 E-value=19 Score=33.94 Aligned_cols=106 Identities=14% Similarity=0.266 Sum_probs=56.7
Q ss_pred cceeEEEcccCCCCCcccccCCC-CCc---ccCCCCCeEEECCEEEEEecCCCEEEEEECCCCcEEEeecC----Ccccc
Q 045071 235 LSSESFHIDAGGFFSLWGTTSSL-PRL---CSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAP----MRRFL 306 (453)
Q Consensus 235 ~~~evyds~~~~~~~~W~~~~~~-p~~---~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p----~~~~~ 306 (453)
.....||... .+|.....- ... ..+.+..-+++.|.+..-+.....+..||.++.+|+.+..- +|...
T Consensus 16 ~~lC~yd~~~----~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDN----SQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCC----CEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcE
Confidence 4568999998 999987532 110 00111223333444333332346799999999999877441 12111
Q ss_pred CCCceee-eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEee
Q 045071 307 RSPSLLD-SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIER 352 (453)
Q Consensus 307 ~~~~lv~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~ 352 (453)
....+.. ...++++.|.. .. ..-.|.++| ..+|..+..
T Consensus 92 ~a~~~~~~d~~~~~~aG~~-~~-----g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRS-AN-----GSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEEeeccCCceEEEecee-cC-----CCceEEEEc--CCceEeccc
Confidence 1111112 23466666654 21 122455556 578988765
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.14 E-value=1.4 Score=43.22 Aligned_cols=39 Identities=31% Similarity=0.564 Sum_probs=34.4
Q ss_pred ccCCChHHHHHHHHhcCChhhhhhhhhccccccccccCc
Q 045071 50 IWSKLPQRLLDRVLAFLPPPAFFRARAVCKRWYGLLFSN 88 (453)
Q Consensus 50 ~w~~LP~dll~~IL~rLp~~~l~r~r~VCK~W~~~i~s~ 88 (453)
+--.||.+++.+|++.|..++++|++.+|+.|+-+..+.
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 334599999999999999999999999999999877653
No 88
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=74.57 E-value=1.6e+02 Score=33.60 Aligned_cols=114 Identities=13% Similarity=0.223 Sum_probs=60.5
Q ss_pred CEEEEEecCCCEEEEEECCCCcEEEeec--CC-c---------------cccCCCc-e-eeeCCeEEEEEEEeccCCCCC
Q 045071 273 GKFYCMNYSPFSVLAYDISANAWFNIQA--PM-R---------------RFLRSPS-L-LDSNGKLILVAAVEKSKLNVP 332 (453)
Q Consensus 273 G~lY~~~~~~~~i~~yD~~~~~W~~i~~--p~-~---------------~~~~~~~-l-v~~~g~L~vv~~~~~~~~~~~ 332 (453)
+.+|+.....+.|..||+.++....+.. +. + .....+. + +.-+|+||++....
T Consensus 752 ~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N------- 824 (1057)
T PLN02919 752 KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN------- 824 (1057)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-------
Confidence 3599888776899999998765432211 10 0 0011222 2 33568888766422
Q ss_pred CcEEEEEeecCCCCeEEEeecCHHHH-------HHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071 333 KSLRLWSLQACGTLWAEIERMPQQLY-------AQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW 399 (453)
Q Consensus 333 ~~i~vw~ld~~~~~W~~v~~mp~~~~-------~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W 399 (453)
..|++| +..++....+......-+ .++.. ..++ ++..++.||+.....+.|.++|+.+++-
T Consensus 825 ~rIrvi--D~~tg~v~tiaG~G~~G~~dG~~~~a~l~~---P~GI-avd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKL--DPATKRVTTLAGTGKAGFKDGKALKAQLSE---PAGL-ALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEE--ECCCCeEEEEeccCCcCCCCCcccccccCC---ceEE-EEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 234555 544454444432221000 00100 1122 2333456999887788999999998764
No 89
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=73.57 E-value=67 Score=29.96 Aligned_cols=103 Identities=15% Similarity=0.172 Sum_probs=60.1
Q ss_pred ECCEEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeE
Q 045071 271 VNGKFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWA 348 (453)
Q Consensus 271 ~~G~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~ 348 (453)
.+|.+|--++. ...|..||+.+++-... .++|...-.=.+...+++||+..-.++ ..+.+|. ...+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~-~~l~~~~FgEGit~~~d~l~qLTWk~~---------~~f~yd~--~tl~ 121 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQS-VPLPPRYFGEGITILGDKLYQLTWKEG---------TGFVYDP--NTLK 121 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEE-EE-TTT--EEEEEEETTEEEEEESSSS---------EEEEEET--TTTE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEE-EECCccccceeEEEECCEEEEEEecCC---------eEEEEcc--ccce
Confidence 57888876542 35799999999876432 233322111246678999998764322 5566675 4577
Q ss_pred EEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCC
Q 045071 349 EIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCM 396 (453)
Q Consensus 349 ~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~ 396 (453)
++.+.+-. ..++.....|+.++++.. +.++...|+++
T Consensus 122 ~~~~~~y~----------~EGWGLt~dg~~Li~SDG-S~~L~~~dP~~ 158 (264)
T PF05096_consen 122 KIGTFPYP----------GEGWGLTSDGKRLIMSDG-SSRLYFLDPET 158 (264)
T ss_dssp EEEEEE-S----------SS--EEEECSSCEEEE-S-SSEEEEE-TTT
T ss_pred EEEEEecC----------CcceEEEcCCCEEEEECC-ccceEEECCcc
Confidence 77766421 135555556666666543 67778888765
No 90
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=73.35 E-value=40 Score=31.85 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=59.0
Q ss_pred CEEEEEECCCCcEEEeecCCccccCCCcee-eeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEee-----cCHH
Q 045071 283 FSVLAYDISANAWFNIQAPMRRFLRSPSLL-DSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIER-----MPQQ 356 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv-~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~-----mp~~ 356 (453)
..|..||..+.+|..+......... .|. ..+++|++.|...-+. .....+-.+|..+.+|+.+.. +|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~--~l~~~~~~~Llv~G~ft~~~---~~~~~la~yd~~~~~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVT--DLQWASNNQLLVGGNFTLNG---TNSSNLATYDFKNQTWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEE--EEEEecCCEEEEEEeeEECC---CCceeEEEEecCCCeeeecCCcccccCCCc
Confidence 4789999999999876433222111 222 2478888888655332 123344444555789987654 2321
Q ss_pred HHHHhhcccCCCcEEEE-eeCCEEEEEEcC---CCeEEEEECCCCceEEcCC
Q 045071 357 LYAQFAEIEAGNGFDTI-GHGEFIVIVIRG---SDKALLFDLCMKSWQWIPR 404 (453)
Q Consensus 357 ~~~~~~~~~~~~~~~~~-~~g~~I~l~~~~---~~~v~~Yd~~~~~W~~l~~ 404 (453)
+ ..+... ..++.+++.+.. ...+..|| ..+|+.+..
T Consensus 91 v----------~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 91 V----------TALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred E----------EEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 1 122222 234567765542 44566674 468998865
No 91
>PRK04043 tolB translocation protein TolB; Provisional
Probab=72.94 E-value=76 Score=31.92 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=59.2
Q ss_pred CEEEEEECCCCcEEEeecCCccccCCCceeeeCC-eEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHh
Q 045071 283 FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNG-KLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQF 361 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g-~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~ 361 (453)
..|..+|+.+++=+.+.. .+.....+. ..-+| +|++.. .... .-+||.++...+.++.+...+...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~-~~g~~~~~~-~SPDG~~la~~~-~~~g------~~~Iy~~dl~~g~~~~LT~~~~~d---- 279 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS-SQGMLVVSD-VSKDGSKLLLTM-APKG------QPDIYLYDTNTKTLTQITNYPGID---- 279 (419)
T ss_pred CEEEEEECCCCcEEEEec-CCCcEEeeE-ECCCCCEEEEEE-ccCC------CcEEEEEECCCCcEEEcccCCCcc----
Confidence 579999999887766632 221111112 23355 454433 2211 238999987777787776544200
Q ss_pred hcccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEc
Q 045071 362 AEIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWI 402 (453)
Q Consensus 362 ~~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l 402 (453)
..-.....|..|+|.... ...++++|+++++.+.+
T Consensus 280 ------~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 280 ------VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred ------CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 011233467788887643 45899999998887665
No 92
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=70.81 E-value=5.2 Score=38.20 Aligned_cols=39 Identities=26% Similarity=0.534 Sum_probs=33.7
Q ss_pred cccCCChHHHHHHHHhcCC--------hhhhhhhhhccccccccccC
Q 045071 49 RIWSKLPQRLLDRVLAFLP--------PPAFFRARAVCKRWYGLLFS 87 (453)
Q Consensus 49 ~~w~~LP~dll~~IL~rLp--------~~~l~r~r~VCK~W~~~i~s 87 (453)
..|.+||.++|.+|+.|.. .++.+.++.||+.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 7899999999999999886 23678999999999997654
No 93
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=70.72 E-value=8.8 Score=23.97 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=18.3
Q ss_pred CeEEECCEEEEEecCCCEEEEEECCC
Q 045071 267 RMVQVNGKFYCMNYSPFSVLAYDISA 292 (453)
Q Consensus 267 ~~v~~~G~lY~~~~~~~~i~~yD~~~ 292 (453)
.+++.+|.+|+.+.. ..+.++|.++
T Consensus 16 ~~~v~~g~vyv~~~d-g~l~ald~~t 40 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGD-GNLYALDAAT 40 (40)
T ss_dssp --EECTSEEEEE-TT-SEEEEEETT-
T ss_pred CCEEECCEEEEEcCC-CEEEEEeCCC
Confidence 357789999998876 6899999874
No 94
>smart00284 OLF Olfactomedin-like domains.
Probab=68.58 E-value=1e+02 Score=28.66 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=73.5
Q ss_pred ecCceEEEEecCCCCeeEEEEcCcccce---ecCCCCCCC-C------CcceEEEEEcCCceEEEEEccCCCCccccccc
Q 045071 166 SSGGLVCWVSDHAGAKTLILCNPVTGSL---SQLPPTLRP-R------LFPSIGLKVTPTAVDVTVAGDDLISPYAVKNL 235 (453)
Q Consensus 166 s~~Gll~~~~~~~~~~~~~v~NP~T~~w---~~LP~~~~~-r------~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~ 235 (453)
.-+|-+++.... ...++-+|..|++- +.||.-... + ....+-+++|..+--|+-+.........+..+
T Consensus 81 VYngslYY~~~~--s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkL 158 (255)
T smart00284 81 VYNGSLYFNKFN--SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKL 158 (255)
T ss_pred EECceEEEEecC--CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEee
Confidence 345666665432 34788899998865 455532111 1 12345566665544444333221111110001
Q ss_pred ceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEec---CCCE-EEEEECCCCcEEEeecCCccccCCCce
Q 045071 236 SSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNY---SPFS-VLAYDISANAWFNIQAPMRRFLRSPSL 311 (453)
Q Consensus 236 ~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~---~~~~-i~~yD~~~~~W~~i~~p~~~~~~~~~l 311 (453)
..+..+. . ..|..- .++. .. ..+-++-|+||++.. .... -.+||..+++=..+..|++........
T Consensus 159 np~tL~v-e----~tW~T~--~~k~-sa--~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~ 228 (255)
T smart00284 159 NPATLTI-E----NTWITT--YNKR-SA--SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISM 228 (255)
T ss_pred CcccceE-E----EEEEcC--CCcc-cc--cccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeecccccccee
Confidence 1111222 2 588873 2221 11 234445699999964 1233 489999987765566676654444444
Q ss_pred ee---eCCeEEEEE
Q 045071 312 LD---SNGKLILVA 322 (453)
Q Consensus 312 v~---~~g~L~vv~ 322 (453)
+. .+.+||+..
T Consensus 229 l~YNP~d~~LY~wd 242 (255)
T smart00284 229 LDYNPNDRKLYAWN 242 (255)
T ss_pred ceeCCCCCeEEEEe
Confidence 44 357777644
No 95
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=68.44 E-value=1.2e+02 Score=29.37 Aligned_cols=113 Identities=15% Similarity=0.304 Sum_probs=63.8
Q ss_pred ecCCCEEEEEECCCCcEEEeec-CCccccCCC-cee-eeCCeE-EEEEEEeccCCCCCCcEEEEEeecCCCCeEEEe---
Q 045071 279 NYSPFSVLAYDISANAWFNIQA-PMRRFLRSP-SLL-DSNGKL-ILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIE--- 351 (453)
Q Consensus 279 ~~~~~~i~~yD~~~~~W~~i~~-p~~~~~~~~-~lv-~~~g~L-~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~--- 351 (453)
.-..+.|..||++.+....... -.+.. ..+ .|+ -=+|++ |+|+.. ..+|.||+++...++.+++.
T Consensus 163 DLG~Dri~~y~~~dg~L~~~~~~~v~~G-~GPRHi~FHpn~k~aY~v~EL-------~stV~v~~y~~~~g~~~~lQ~i~ 234 (346)
T COG2706 163 DLGTDRIFLYDLDDGKLTPADPAEVKPG-AGPRHIVFHPNGKYAYLVNEL-------NSTVDVLEYNPAVGKFEELQTID 234 (346)
T ss_pred ecCCceEEEEEcccCccccccccccCCC-CCcceEEEcCCCcEEEEEecc-------CCEEEEEEEcCCCceEEEeeeec
Confidence 3345789999999766543211 01111 112 232 234555 555532 24789999998767777654
Q ss_pred ecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCC--CceEEcC
Q 045071 352 RMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCM--KSWQWIP 403 (453)
Q Consensus 352 ~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~--~~W~~l~ 403 (453)
.||.. |........+.....|.++|++.+..+.+.+|-+.. ++.+.+.
T Consensus 235 tlP~d----F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~ 284 (346)
T COG2706 235 TLPED----FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG 284 (346)
T ss_pred cCccc----cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE
Confidence 45653 322211123334456889999988777888886554 4444443
No 96
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=67.83 E-value=15 Score=35.21 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=41.3
Q ss_pred CEEEEEECC-CCcEEEeecCCccccCCCceeee-CCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEE-EeecCH
Q 045071 283 FSVLAYDIS-ANAWFNIQAPMRRFLRSPSLLDS-NGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAE-IERMPQ 355 (453)
Q Consensus 283 ~~i~~yD~~-~~~W~~i~~p~~~~~~~~~lv~~-~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~-v~~mp~ 355 (453)
..++.|-.. ...|..-..-.+.....+.++++ +|+|+|+..+.+. .-+||+=.+-...|++ +..++.
T Consensus 149 ~SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g------~rrVYeS~DmG~tWtea~gtlsr 218 (310)
T PF13859_consen 149 VSLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDG------RRRVYESGDMGTTWTEALGTLSR 218 (310)
T ss_dssp EEEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS---------EEEESSTTSS-EE-TTTTTT
T ss_pred EEEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecccc------eEEEEEEcccceehhhccCccce
Confidence 457888777 57897543322344456789999 8999999987654 1278887766788998 556664
No 97
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=66.31 E-value=1.2e+02 Score=28.88 Aligned_cols=119 Identities=14% Similarity=0.222 Sum_probs=67.8
Q ss_pred EEEEEecCCCEEEEEECC--CCcEEEeec--CCcccc---CCC-cee-eeCCeEEEEEEEeccCCCCCCcEEEEEeecCC
Q 045071 274 KFYCMNYSPFSVLAYDIS--ANAWFNIQA--PMRRFL---RSP-SLL-DSNGKLILVAAVEKSKLNVPKSLRLWSLQACG 344 (453)
Q Consensus 274 ~lY~~~~~~~~i~~yD~~--~~~W~~i~~--p~~~~~---~~~-~lv-~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~ 344 (453)
.+|+.....+.|.+||.. +++.+.+.. ..|... ..+ .+. .-+|+.+.++... ...+.+|.++...
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~------~~~I~v~~i~~~~ 261 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRT------ASLISVFSVSEDG 261 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCC------CCeEEEEEEeCCC
Confidence 578877656789999887 345544311 111111 111 122 2345533333211 2478899998766
Q ss_pred CCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEEC--CCCceEEcCCCC
Q 045071 345 TLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDL--CMKSWQWIPRCP 406 (453)
Q Consensus 345 ~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~--~~~~W~~l~~~p 406 (453)
..++.+...+... ....+.....|.++|+.....+.+.+|++ +++.+..+....
T Consensus 262 ~~~~~~~~~~~~~--------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~ 317 (330)
T PRK11028 262 SVLSFEGHQPTET--------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELGRYA 317 (330)
T ss_pred CeEEEeEEEeccc--------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEccccc
Confidence 6677666655310 11244555678899998766788999876 456777765443
No 98
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=65.85 E-value=87 Score=30.74 Aligned_cols=108 Identities=12% Similarity=0.131 Sum_probs=62.8
Q ss_pred eEEECCEEEEEecCCCEEEEEECCCCc--EEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecC--
Q 045071 268 MVQVNGKFYCMNYSPFSVLAYDISANA--WFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQAC-- 343 (453)
Q Consensus 268 ~v~~~G~lY~~~~~~~~i~~yD~~~~~--W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~-- 343 (453)
.+..+|++|+.... ..|.++|+++.. |+.-.......... .++..+|+||+-.. .. .+|.||..
T Consensus 64 ~~~~dg~v~~~~~~-G~i~A~d~~~g~~~W~~~~~~~~~~~~~-~~~~~~G~i~~g~~-~g---------~~y~ld~~~G 131 (370)
T COG1520 64 PADGDGTVYVGTRD-GNIFALNPDTGLVKWSYPLLGAVAQLSG-PILGSDGKIYVGSW-DG---------KLYALDASTG 131 (370)
T ss_pred cEeeCCeEEEecCC-CcEEEEeCCCCcEEecccCcCcceeccC-ceEEeCCeEEEecc-cc---------eEEEEECCCC
Confidence 48889999997544 479999999876 86532210111222 33344899876221 11 68888873
Q ss_pred CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071 344 GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW 399 (453)
Q Consensus 344 ~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W 399 (453)
...|..-... . +.- .-.++..++.||+.. ..+.+...|.++.+-
T Consensus 132 ~~~W~~~~~~--~----~~~-----~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~ 175 (370)
T COG1520 132 TLVWSRNVGG--S----PYY-----ASPPVVGDGTVYVGT-DDGHLYALNADTGTL 175 (370)
T ss_pred cEEEEEecCC--C----eEE-----ecCcEEcCcEEEEec-CCCeEEEEEccCCcE
Confidence 5568753222 0 100 001344466677653 357888888887643
No 99
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=65.78 E-value=1.1e+02 Score=28.11 Aligned_cols=167 Identities=18% Similarity=0.204 Sum_probs=90.4
Q ss_pred CcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCC---cEEEeecC-----Ccc---ccCCCceeeeCCe
Q 045071 249 SLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISAN---AWFNIQAP-----MRR---FLRSPSLLDSNGK 317 (453)
Q Consensus 249 ~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~---~W~~i~~p-----~~~---~~~~~~lv~~~g~ 317 (453)
+.|...-.+|. .+....-|+.+|.+|........|+.||++++ .+..++.- .|- ......++..+.-
T Consensus 56 ~~~~~~~~lp~--~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~G 133 (249)
T KOG3545|consen 56 GRKAEKYRLPY--SWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENG 133 (249)
T ss_pred cCcceEEeCCC--CccccceEEEcceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccc
Confidence 45555545554 34445568999999998776678999999984 34443221 010 0112345666677
Q ss_pred EEEEEEEeccCCCCCCcEEEEEeecC----CCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC---CCeE-
Q 045071 318 LILVAAVEKSKLNVPKSLRLWSLQAC----GTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG---SDKA- 389 (453)
Q Consensus 318 L~vv~~~~~~~~~~~~~i~vw~ld~~----~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~---~~~v- 389 (453)
|.+|-...++. ..+.|=+||+. ...|.. .++.. .....|..+ +.+|+...- ...+
T Consensus 134 LWviYat~~~~----g~iv~skLdp~tl~~e~tW~T--~~~k~--------~~~~aF~iC---GvLY~v~S~~~~~~~i~ 196 (249)
T KOG3545|consen 134 LWVIYATPENA----GTIVLSKLDPETLEVERTWNT--TLPKR--------SAGNAFMIC---GVLYVVHSYNCTHTQIS 196 (249)
T ss_pred eeEEecccccC----CcEEeeccCHHHhheeeeecc--ccCCC--------CcCceEEEe---eeeEEEeccccCCceEE
Confidence 77766544431 23344666653 345532 22220 111233322 346654321 2233
Q ss_pred EEEECCCCceEEcCCCCCcCCCCCCCCCCCCCceeEEEEeccccCCc-hhhhccccc
Q 045071 390 LLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATP-VTALLDQLT 445 (453)
Q Consensus 390 ~~Yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~f~P~l~~~-~~~~~~~~~ 445 (453)
.+||..+++-+.+ .+|+.... .....+.|.|+=... .+++--||+
T Consensus 197 yaydt~~~~~~~~-~ipf~N~y----------~~~~~idYNP~D~~LY~wdng~~l~ 242 (249)
T KOG3545|consen 197 YAYDTTTGTQERI-DLPFPNPY----------SYATMIDYNPRDRRLYAWDNGHQLT 242 (249)
T ss_pred EEEEcCCCceecc-cccccchh----------hhhhccCCCcccceeeEecCCcEEE
Confidence 6999998877544 57765442 367788899964333 344444443
No 100
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=64.80 E-value=84 Score=31.31 Aligned_cols=118 Identities=11% Similarity=0.141 Sum_probs=60.7
Q ss_pred EEECCEEEEEecC---CCEEEEEECCCCc---EEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeec
Q 045071 269 VQVNGKFYCMNYS---PFSVLAYDISANA---WFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQA 342 (453)
Q Consensus 269 v~~~G~lY~~~~~---~~~i~~yD~~~~~---W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~ 342 (453)
...++.+|+++.. ...|+.+|+.+.. |..+-.|......--.+...+++|++...... .. +|..++.
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~-----~~--~l~v~~~ 356 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG-----SS--RLRVYDL 356 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT-----EE--EEEEEET
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC-----cc--EEEEEEC
Confidence 3468889988753 3689999999764 76432332211111123346788876554322 22 4444454
Q ss_pred CCCCeEEE-eecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC---CCeEEEEECCCCceEEc
Q 045071 343 CGTLWAEI-ERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG---SDKALLFDLCMKSWQWI 402 (453)
Q Consensus 343 ~~~~W~~v-~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~---~~~v~~Yd~~~~~W~~l 402 (453)
. ..|... ..+|.. ... .....--.++.++|...+ ...++.||+.+++.+.+
T Consensus 357 ~-~~~~~~~~~~p~~-----g~v---~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 357 D-DGKESREIPLPEA-----GSV---SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp T--TEEEEEEESSSS-----SEE---EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred C-CCcEEeeecCCcc-----eEE---eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 2 245443 334431 000 011111135677776543 46899999999987654
No 101
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=64.61 E-value=1.1e+02 Score=27.86 Aligned_cols=226 Identities=14% Similarity=0.170 Sum_probs=108.1
Q ss_pred CceEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCC
Q 045071 168 GGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGF 247 (453)
Q Consensus 168 ~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~ 247 (453)
+|-.|+..+. .+.+-+|||+.+...+--.-. .+---.++...|+. |+-..|++ ..+.+||..+|..
T Consensus 28 dGnY~ltcGs--drtvrLWNp~rg~liktYsgh-G~EVlD~~~s~Dns--kf~s~GgD---------k~v~vwDV~TGkv 93 (307)
T KOG0316|consen 28 DGNYCLTCGS--DRTVRLWNPLRGALIKTYSGH-GHEVLDAALSSDNS--KFASCGGD---------KAVQVWDVNTGKV 93 (307)
T ss_pred CCCEEEEcCC--CceEEeecccccceeeeecCC-Cceeeecccccccc--ccccCCCC---------ceEEEEEcccCee
Confidence 5666655443 246788999988654321111 00001223333332 43333433 3457888888643
Q ss_pred CCcccccCCCCCcccCCCCCeEEECCE--EEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEe
Q 045071 248 FSLWGTTSSLPRLCSLESGRMVQVNGK--FYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVE 325 (453)
Q Consensus 248 ~~~W~~~~~~p~~~~~~~~~~v~~~G~--lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~ 325 (453)
...|+....- -..|-+|.. +-+-+.-...+-++|..+...+.++.- ........-+...++..+.|...
T Consensus 94 ~Rr~rgH~aq--------VNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil-dea~D~V~Si~v~~heIvaGS~D 164 (307)
T KOG0316|consen 94 DRRFRGHLAQ--------VNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL-DEAKDGVSSIDVAEHEIVAGSVD 164 (307)
T ss_pred eeecccccce--------eeEEEecCcceEEEeccccceeEEEEcccCCCCccchh-hhhcCceeEEEecccEEEeeccC
Confidence 3455543210 011222221 111122235788999998887655331 11122222344556666555433
Q ss_pred ccCCCCCCcEEEEEeecC------------------CCCeEEEeecCH----------HHHHHhhcc-cCCCcE-EEEee
Q 045071 326 KSKLNVPKSLRLWSLQAC------------------GTLWAEIERMPQ----------QLYAQFAEI-EAGNGF-DTIGH 375 (453)
Q Consensus 326 ~~~~~~~~~i~vw~ld~~------------------~~~W~~v~~mp~----------~~~~~~~~~-~~~~~~-~~~~~ 375 (453)
. .++.|.+..+ ......+..|.. ++...+... .....+ .|+..
T Consensus 165 G-------tvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q 237 (307)
T KOG0316|consen 165 G-------TVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ 237 (307)
T ss_pred C-------cEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc
Confidence 2 2234433321 223444444432 222222110 001122 24556
Q ss_pred CCEEEEEEcCCCeEEEEECCCCceEEcCCCCCcCCCCCCCCCCCCCceeEEEEeccccCCc
Q 045071 376 GEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEGELHGFAYEPRLATP 436 (453)
Q Consensus 376 g~~I~l~~~~~~~v~~Yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~~~~~~~f~P~l~~~ 436 (453)
.+...+.+...+.+++||+....- +.+.+.. ....+.-+.|.|+..--
T Consensus 238 sdthV~sgSEDG~Vy~wdLvd~~~--~sk~~~~-----------~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 238 SDTHVFSGSEDGKVYFWDLVDETQ--ISKLSVV-----------STVIVTDLSCHPTMDDF 285 (307)
T ss_pred cceeEEeccCCceEEEEEecccee--eeeeccC-----------CceeEEeeecccCccce
Confidence 677777776689999999988653 2222221 12357788888887663
No 102
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=64.41 E-value=1.7e+02 Score=29.66 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=69.4
Q ss_pred ceeeeCCCCCeEeccC--CCC-----C-----CCC-eeeeecCc-eEEEEecCCCCeeEEEEcCcccceecCCCCCCCCC
Q 045071 139 GYLFDPHELSWYRISF--ALV-----P-----SEF-SPASSSGG-LVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRL 204 (453)
Q Consensus 139 ~~~fdp~~~~w~~l~l--~~l-----p-----~~~-~~~~s~~G-ll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~ 204 (453)
.+.|||.+++-.++.+ |.. + ..+ .-.+..+| ++.+.. ..+.++.+|-.+.-.+++....-|.
T Consensus 289 IylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS----RGkaFi~~~~~~~~iqv~~~~~VrY 364 (668)
T COG4946 289 IYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS----RGKAFIMRPWDGYSIQVGKKGGVRY 364 (668)
T ss_pred EEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe----cCcEEEECCCCCeeEEcCCCCceEE
Confidence 4789999988876653 321 1 111 11233334 333322 2368899988887777776543232
Q ss_pred cceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCccccc-CCCCCcccCCCCCeEEECCEEEEEecCCC
Q 045071 205 FPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTT-SSLPRLCSLESGRMVQVNGKFYCMNYSPF 283 (453)
Q Consensus 205 ~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~-~~~p~~~~~~~~~~v~~~G~lY~~~~~~~ 283 (453)
. -+..++. + +++|.... -...+|+.++ ..=+.+ .++.... .-.+.-+|+.-++.....
T Consensus 365 ~---r~~~~~e--~-~vigt~dg-------D~l~iyd~~~----~e~kr~e~~lg~I~----av~vs~dGK~~vvaNdr~ 423 (668)
T COG4946 365 R---RIQVDPE--G-DVIGTNDG-------DKLGIYDKDG----GEVKRIEKDLGNIE----AVKVSPDGKKVVVANDRF 423 (668)
T ss_pred E---EEccCCc--c-eEEeccCC-------ceEEEEecCC----ceEEEeeCCccceE----EEEEcCCCcEEEEEcCce
Confidence 1 1223332 2 23333211 2458888877 332322 2232211 112334566555555556
Q ss_pred EEEEEECCCCcEEEe
Q 045071 284 SVLAYDISANAWFNI 298 (453)
Q Consensus 284 ~i~~yD~~~~~W~~i 298 (453)
.|+++|.+++.-+++
T Consensus 424 el~vididngnv~~i 438 (668)
T COG4946 424 ELWVIDIDNGNVRLI 438 (668)
T ss_pred EEEEEEecCCCeeEe
Confidence 778888887765554
No 103
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=63.45 E-value=1.3e+02 Score=27.95 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=74.5
Q ss_pred cCceEEEEecCCCCeeEEEEcCcccc---eecCCCCCCC-------CCcceEEEEEcCCceEEEEEccCCCCcccccccc
Q 045071 167 SGGLVCWVSDHAGAKTLILCNPVTGS---LSQLPPTLRP-------RLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLS 236 (453)
Q Consensus 167 ~~Gll~~~~~~~~~~~~~v~NP~T~~---w~~LP~~~~~-------r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~ 236 (453)
-+|-++.... ....++.+|..++. +..||..... .....+-+++|..+--|+-+....... +.
T Consensus 77 YngslYY~~~--~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~-----iv 149 (250)
T PF02191_consen 77 YNGSLYYNKY--NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN-----IV 149 (250)
T ss_pred ECCcEEEEec--CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc-----EE
Confidence 4566666543 24588999998886 4466654321 112344566665443333332211100 11
Q ss_pred eeEEEcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCC---CEE-EEEECCCCcEEEeecCCccccCCCcee
Q 045071 237 SESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSP---FSV-LAYDISANAWFNIQAPMRRFLRSPSLL 312 (453)
Q Consensus 237 ~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~---~~i-~~yD~~~~~W~~i~~p~~~~~~~~~lv 312 (453)
+-.-|+++-.-..+|... .++. .. ..+-++-|+||++.... ..| .+||..+++-..+..|++........+
T Consensus 150 vskld~~tL~v~~tw~T~--~~k~-~~--~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l 224 (250)
T PF02191_consen 150 VSKLDPETLSVEQTWNTS--YPKR-SA--GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISML 224 (250)
T ss_pred EEeeCcccCceEEEEEec--cCch-hh--cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEee
Confidence 111111110001577753 2210 11 23444569999996542 334 899999988877777766544444445
Q ss_pred e---eCCeEEEEE
Q 045071 313 D---SNGKLILVA 322 (453)
Q Consensus 313 ~---~~g~L~vv~ 322 (453)
. .+.+||+..
T Consensus 225 ~YNP~dk~LY~wd 237 (250)
T PF02191_consen 225 SYNPRDKKLYAWD 237 (250)
T ss_pred eECCCCCeEEEEE
Confidence 4 357888755
No 104
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=63.18 E-value=1.1e+02 Score=31.36 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=24.1
Q ss_pred CeEEECCEEEEEecCCCEEEEEECCCC--cEEE
Q 045071 267 RMVQVNGKFYCMNYSPFSVLAYDISAN--AWFN 297 (453)
Q Consensus 267 ~~v~~~G~lY~~~~~~~~i~~yD~~~~--~W~~ 297 (453)
.+++.+|++|+.... ..+.++|.+++ .|+.
T Consensus 56 sPvv~~g~vy~~~~~-g~l~AlD~~tG~~~W~~ 87 (488)
T cd00216 56 TPLVVDGDMYFTTSH-SALFALDAATGKVLWRY 87 (488)
T ss_pred CCEEECCEEEEeCCC-CcEEEEECCCChhhcee
Confidence 468889999998765 68999999875 5865
No 105
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=62.77 E-value=1.6e+02 Score=29.05 Aligned_cols=114 Identities=15% Similarity=0.115 Sum_probs=60.1
Q ss_pred CC-EEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeE
Q 045071 272 NG-KFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWA 348 (453)
Q Consensus 272 ~G-~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~ 348 (453)
+| .|++.... ...|..+|+.++....+... ......+.. .-+|+.+++..... ....||.++..+..+.
T Consensus 244 Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~-s~dg~~l~~~s~~~------g~~~iy~~d~~~~~~~ 315 (417)
T TIGR02800 244 DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-PGIDTEPSW-SPDGKSIAFTSDRG------GSPQIYMMDADGGEVR 315 (417)
T ss_pred CCCEEEEEECCCCCccEEEEECCCCCEEECCCC-CCCCCCEEE-CCCCCEEEEEECCC------CCceEEEEECCCCCEE
Confidence 44 35554322 24689999998877665321 111111111 22555443332111 1237888887666666
Q ss_pred EEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEcC
Q 045071 349 EIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 349 ~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l~ 403 (453)
.+..-.. ..........|+.|++.... ...+.+||+.++.++.+.
T Consensus 316 ~l~~~~~----------~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 316 RLTFRGG----------YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred EeecCCC----------CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 5432111 00122233457777776543 347999999998777665
No 106
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=62.20 E-value=1.2e+02 Score=27.73 Aligned_cols=93 Identities=14% Similarity=0.213 Sum_probs=51.2
Q ss_pred CEEEEEecCCCEEEEEE--CCCCcEE------Eeec--CCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeec
Q 045071 273 GKFYCMNYSPFSVLAYD--ISANAWF------NIQA--PMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQA 342 (453)
Q Consensus 273 G~lY~~~~~~~~i~~yD--~~~~~W~------~i~~--p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~ 342 (453)
-++|++....+.|.+|| ..++.-. .++. |........-.+..+|.||+...... .|.++|+
T Consensus 170 K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~---------~V~~~dp 240 (310)
T KOG4499|consen 170 KKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG---------TVQKVDP 240 (310)
T ss_pred cEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc---------EEEEECC
Confidence 46888877667887776 5554321 1111 11110111122356899998665332 7889999
Q ss_pred CCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeC--CEEEEEEc
Q 045071 343 CGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHG--EFIVIVIR 384 (453)
Q Consensus 343 ~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g--~~I~l~~~ 384 (453)
.+++-.+--.+|.. ...-.|++.. |.+|+...
T Consensus 241 ~tGK~L~eiklPt~----------qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 241 TTGKILLEIKLPTP----------QITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCCcEEEEEEcCCC----------ceEEEEecCCCccEEEEEeh
Confidence 87765554466641 1233455544 56676543
No 107
>PRK05137 tolB translocation protein TolB; Provisional
Probab=61.39 E-value=1.8e+02 Score=29.17 Aligned_cols=197 Identities=12% Similarity=0.072 Sum_probs=92.8
Q ss_pred eEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCC
Q 045071 170 LVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFS 249 (453)
Q Consensus 170 ll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~ 249 (453)
.|.+.....+...++++|+.+++.+.+...+..- .+....+++-++++...... .....+++.++ +
T Consensus 215 ~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~----~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~----~ 280 (435)
T PRK05137 215 EITYMSYANGRPRVYLLDLETGQRELVGNFPGMT----FAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRS----G 280 (435)
T ss_pred EEEEEEecCCCCEEEEEECCCCcEEEeecCCCcc----cCcEECCCCCEEEEEEecCC------CceEEEEECCC----C
Confidence 4444433333458999999998877765433211 12233344445544432211 12234445555 3
Q ss_pred cccccCCCCCcccCCCCCeEE-ECC-EEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEe
Q 045071 250 LWGTTSSLPRLCSLESGRMVQ-VNG-KFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVE 325 (453)
Q Consensus 250 ~W~~~~~~p~~~~~~~~~~v~-~~G-~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~ 325 (453)
.-+.+...+. .. ....+ -+| .+++.... ...|..+|..+++.+.+... ......+. ..-+|+.+++....
T Consensus 281 ~~~~Lt~~~~---~~-~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~~-~SpdG~~ia~~~~~ 354 (435)
T PRK05137 281 TTTRLTDSPA---ID-TSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTPV-WSPRGDLIAFTKQG 354 (435)
T ss_pred ceEEccCCCC---cc-CceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCeE-ECCCCCEEEEEEcC
Confidence 3333322111 00 11122 234 35544322 24688899888877666321 11111222 22345544443322
Q ss_pred ccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--C---CeEEEEECCCCceE
Q 045071 326 KSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--S---DKALLFDLCMKSWQ 400 (453)
Q Consensus 326 ~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~---~~v~~Yd~~~~~W~ 400 (453)
. ...+||.++...+....+.. .. . .........|..|++.... . ..++.+|+..+.-+
T Consensus 355 ~------~~~~i~~~d~~~~~~~~lt~-~~-------~---~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~ 417 (435)
T PRK05137 355 G------GQFSIGVMKPDGSGERILTS-GF-------L---VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER 417 (435)
T ss_pred C------CceEEEEEECCCCceEeccC-CC-------C---CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE
Confidence 1 13467777764443333221 10 0 0122334467777776542 1 47899999887776
Q ss_pred EcC
Q 045071 401 WIP 403 (453)
Q Consensus 401 ~l~ 403 (453)
.++
T Consensus 418 ~l~ 420 (435)
T PRK05137 418 EVP 420 (435)
T ss_pred Ecc
Confidence 665
No 108
>PF13013 F-box-like_2: F-box-like domain
Probab=58.89 E-value=7.3 Score=30.90 Aligned_cols=30 Identities=20% Similarity=0.471 Sum_probs=25.4
Q ss_pred ccCCChHHHHHHHHhcCChhhhhhhhhccc
Q 045071 50 IWSKLPQRLLDRVLAFLPPPAFFRARAVCK 79 (453)
Q Consensus 50 ~w~~LP~dll~~IL~rLp~~~l~r~r~VCK 79 (453)
...+||+||++.|+....-+++...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478899999999999999888876666666
No 109
>PTZ00334 trans-sialidase; Provisional
Probab=58.17 E-value=34 Score=36.96 Aligned_cols=82 Identities=18% Similarity=0.314 Sum_probs=52.2
Q ss_pred eEEE-CCEEEEEec------CCCEEEEEECCCCcEEEeecCCccccCCCceeeeC-CeEEEEEEEeccCCCCCCcEEEEE
Q 045071 268 MVQV-NGKFYCMNY------SPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSN-GKLILVAAVEKSKLNVPKSLRLWS 339 (453)
Q Consensus 268 ~v~~-~G~lY~~~~------~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~-g~L~vv~~~~~~~~~~~~~i~vw~ 339 (453)
+|.. ||.|-+-.. ....++.|-.+++.|..-..-.+.....+.+++++ |+|+|+..+.+.+ -+||+
T Consensus 265 GI~medGTLVFPv~a~~~~g~~vslIiYS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~dG~------RrVYE 338 (780)
T PTZ00334 265 GVQMKDGTLVFPVEGTKKDGKAVSLIIYSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTACDDGR------RRVYE 338 (780)
T ss_pred eEEecCCeEEEEEEEEcCCCCEEEEEEEecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEEeCCCC------EEEEE
Confidence 4444 677555321 11357788777778954332233445678899996 9999988876532 27888
Q ss_pred eecCCCCeEE-EeecCH
Q 045071 340 LQACGTLWAE-IERMPQ 355 (453)
Q Consensus 340 ld~~~~~W~~-v~~mp~ 355 (453)
-.+-...|+| +..|+.
T Consensus 339 S~DmG~tWtEAlGTLsr 355 (780)
T PTZ00334 339 SGDKGDSWTEALGTLSR 355 (780)
T ss_pred ECCCCCChhhCCCccce
Confidence 7666788987 455543
No 110
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=58.11 E-value=28 Score=20.25 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=18.7
Q ss_pred EEECCEEEEEecCCCEEEEEECCCCc
Q 045071 269 VQVNGKFYCMNYSPFSVLAYDISANA 294 (453)
Q Consensus 269 v~~~G~lY~~~~~~~~i~~yD~~~~~ 294 (453)
+..+|.+|+.... ..+.++|.++++
T Consensus 3 ~~~~~~v~~~~~~-g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTD-GTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCC-CEEEEEEcccCc
Confidence 4567788887655 689999998764
No 111
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=54.44 E-value=2.2e+02 Score=27.93 Aligned_cols=108 Identities=11% Similarity=0.012 Sum_probs=56.5
Q ss_pred CEEEEEECCCCcEEE-eecCCccccCCCceee-eCCeEEEEEEEecc--CCCCCCcEEEEEeecCCCCeEEEeecC--HH
Q 045071 283 FSVLAYDISANAWFN-IQAPMRRFLRSPSLLD-SNGKLILVAAVEKS--KLNVPKSLRLWSLQACGTLWAEIERMP--QQ 356 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~-i~~p~~~~~~~~~lv~-~~g~L~vv~~~~~~--~~~~~~~i~vw~ld~~~~~W~~v~~mp--~~ 356 (453)
+.+.++|.++.+-.. ++.- .... .++. .+..||+....-.. +-...+.+.||... ..+.+.+++ ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G---~~P~-~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~----t~~~~~~i~~p~~ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG---FLPN-PVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ----THLPIADIELPEG 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc---CCCc-eeECCCCCEEEEEeccccccccCCCCCEEEEEECc----cCcEEeEEccCCC
Confidence 578899998866532 3221 1111 2343 44566665542110 11123456666433 344454443 21
Q ss_pred -HHHHhhcccCCCcEEEEeeCCEEEEEEcC-CCeEEEEECCCCceEE
Q 045071 357 -LYAQFAEIEAGNGFDTIGHGEFIVIVIRG-SDKALLFDLCMKSWQW 401 (453)
Q Consensus 357 -~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-~~~v~~Yd~~~~~W~~ 401 (453)
.++ .......+.....|..+|+...+ ...+.+.|+.+++-..
T Consensus 99 p~~~---~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 99 PRFL---VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred chhh---ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 111 11111244555567889988755 7899999999987533
No 112
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=53.74 E-value=2.3e+02 Score=29.46 Aligned_cols=115 Identities=15% Similarity=0.151 Sum_probs=60.4
Q ss_pred cCceEEEEecCCCCeeEEEEcCcccc--eecCCCCCCCC-C---c--ceEEEEEcCCceEEEEEccCCCCccccccccee
Q 045071 167 SGGLVCWVSDHAGAKTLILCNPVTGS--LSQLPPTLRPR-L---F--PSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSE 238 (453)
Q Consensus 167 ~~Gll~~~~~~~~~~~~~v~NP~T~~--w~~LP~~~~~r-~---~--~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~e 238 (453)
.+|.|++.... ..++.+|..|++ |+.-+..+... . . ..-++.+. .-+||+...+ -...
T Consensus 68 ~~g~vyv~s~~---g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~d---------g~l~ 133 (527)
T TIGR03075 68 VDGVMYVTTSY---SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLD---------ARLV 133 (527)
T ss_pred ECCEEEEECCC---CcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCC---------CEEE
Confidence 47888875432 257778888875 65433222100 0 0 00011221 1266654332 1235
Q ss_pred EEEcccCCCCCcccccC-CCCCcccCCCCCeEEECCEEEEEecC-----CCEEEEEECCCC--cEEEe
Q 045071 239 SFHIDAGGFFSLWGTTS-SLPRLCSLESGRMVQVNGKFYCMNYS-----PFSVLAYDISAN--AWFNI 298 (453)
Q Consensus 239 vyds~~~~~~~~W~~~~-~~p~~~~~~~~~~v~~~G~lY~~~~~-----~~~i~~yD~~~~--~W~~i 298 (453)
.+|.++|. -.|+.-. ........ ....++.+|++|+-... ...|.+||.+++ .|+.-
T Consensus 134 ALDa~TGk--~~W~~~~~~~~~~~~~-tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 134 ALDAKTGK--VVWSKKNGDYKAGYTI-TAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred EEECCCCC--EEeecccccccccccc-cCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 56776665 6787632 22111111 13467889999886432 357999999986 47643
No 113
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=53.07 E-value=43 Score=25.50 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=23.3
Q ss_pred CEEEEEECCCCcEEEeecCCccccCCC-ce-eeeCCeEEEEEEEe
Q 045071 283 FSVLAYDISANAWFNIQAPMRRFLRSP-SL-LDSNGKLILVAAVE 325 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~i~~p~~~~~~~~-~l-v~~~g~L~vv~~~~ 325 (453)
..++.||+.+++.+.+..- +..+ .+ +.-++.-++|+...
T Consensus 37 GRll~ydp~t~~~~vl~~~----L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDG----LYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp EEEEEEETTTTEEEEEEEE----ESSEEEEEE-TTSSEEEEEEGG
T ss_pred cCEEEEECCCCeEEEehhC----CCccCeEEEcCCCCEEEEEecc
Confidence 4799999999999876322 1222 22 23456655666533
No 114
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=51.63 E-value=54 Score=31.33 Aligned_cols=54 Identities=20% Similarity=0.192 Sum_probs=39.3
Q ss_pred CeEEECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEE
Q 045071 267 RMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAV 324 (453)
Q Consensus 267 ~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~ 324 (453)
.+-.++|++|++......+..+|+++++.+.+ +-.|...+. ....|.+.+|+..
T Consensus 207 SPRWhdgrLwvldsgtGev~~vD~~~G~~e~V-a~vpG~~rG---L~f~G~llvVgmS 260 (335)
T TIGR03032 207 SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPV-AFLPGFTRG---LAFAGDFAFVGLS 260 (335)
T ss_pred CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEE-EECCCCCcc---cceeCCEEEEEec
Confidence 45678999999998878999999999999877 333332222 2223899888864
No 115
>PRK04792 tolB translocation protein TolB; Provisional
Probab=50.50 E-value=2.9e+02 Score=28.04 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=57.5
Q ss_pred CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhh
Q 045071 283 FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFA 362 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~ 362 (453)
..|..+|+++++.+.+.... .....+. ..-+|+-+++..... ...+||.++..+++++++..-..
T Consensus 286 ~~Iy~~dl~tg~~~~lt~~~-~~~~~p~-wSpDG~~I~f~s~~~------g~~~Iy~~dl~~g~~~~Lt~~g~------- 350 (448)
T PRK04792 286 PEIYVVDIATKALTRITRHR-AIDTEPS-WHPDGKSLIFTSERG------GKPQIYRVNLASGKVSRLTFEGE------- 350 (448)
T ss_pred eEEEEEECCCCCeEECccCC-CCccceE-ECCCCCEEEEEECCC------CCceEEEEECCCCCEEEEecCCC-------
Confidence 46899999998887653211 1111111 223455443332211 13489999887777776642111
Q ss_pred cccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEcC
Q 045071 363 EIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 363 ~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l~ 403 (453)
..........|+.|++.... ...+..+|+.+++.+.+.
T Consensus 351 ---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 351 ---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT 390 (448)
T ss_pred ---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc
Confidence 00112234567788876543 347888999988877664
No 116
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=50.38 E-value=2.9e+02 Score=28.06 Aligned_cols=92 Identities=14% Similarity=0.193 Sum_probs=54.3
Q ss_pred cEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEE
Q 045071 294 AWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTI 373 (453)
Q Consensus 294 ~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~ 373 (453)
.++++ ..++....++-+| ++++|.+...+.-. .+|..|...+.-.+-+...+ +.. -..-
T Consensus 217 tFeK~-vdl~~~vS~PmIV--~~RvYFlsD~eG~G-------nlYSvdldGkDlrrHTnFtd-----YY~------R~~n 275 (668)
T COG4946 217 TFEKF-VDLDGNVSSPMIV--GERVYFLSDHEGVG-------NLYSVDLDGKDLRRHTNFTD-----YYP------RNAN 275 (668)
T ss_pred ceeee-eecCCCcCCceEE--cceEEEEecccCcc-------ceEEeccCCchhhhcCCchh-----ccc------cccC
Confidence 55554 3344444454433 78898877654422 67877765554444333322 111 1123
Q ss_pred eeCCEEEEEEcCCCeEEEEECCCCceEEcCC-CCCc
Q 045071 374 GHGEFIVIVIRGSDKALLFDLCMKSWQWIPR-CPYV 408 (453)
Q Consensus 374 ~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~~-~p~~ 408 (453)
..|.+|.|+. .+.+..||+++++.+++.- +|..
T Consensus 276 sDGkrIvFq~--~GdIylydP~td~lekldI~lpl~ 309 (668)
T COG4946 276 SDGKRIVFQN--AGDIYLYDPETDSLEKLDIGLPLD 309 (668)
T ss_pred CCCcEEEEec--CCcEEEeCCCcCcceeeecCCccc
Confidence 3577888864 4789999999999988753 4554
No 117
>PRK05137 tolB translocation protein TolB; Provisional
Probab=48.97 E-value=2.9e+02 Score=27.72 Aligned_cols=188 Identities=11% Similarity=0.075 Sum_probs=89.3
Q ss_pred CeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCCCCC
Q 045071 180 AKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSSLPR 259 (453)
Q Consensus 180 ~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~~p~ 259 (453)
..+++++|.-...-+.+..-.. ........+++-+|+.+..... .....+++..+ +..+.+...+.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~----~v~~p~wSpDG~~lay~s~~~g------~~~i~~~dl~~----g~~~~l~~~~g 246 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSS----LVLTPRFSPNRQEITYMSYANG------RPRVYLLDLET----GQRELVGNFPG 246 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCC----CeEeeEECCCCCEEEEEEecCC------CCEEEEEECCC----CcEEEeecCCC
Confidence 4578899886554444432111 1222333344445554432211 12346667766 55554443322
Q ss_pred cccCCCCCeEEECCE-EEEEec--CCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEE
Q 045071 260 LCSLESGRMVQVNGK-FYCMNY--SPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLR 336 (453)
Q Consensus 260 ~~~~~~~~~v~~~G~-lY~~~~--~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~ 336 (453)
.. . .....-+|+ +++... ....|..+|.++++...+.. .+.....+. ..-+|+-+++..... ...+
T Consensus 247 ~~-~--~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-~~~~~~~~~-~spDG~~i~f~s~~~------g~~~ 315 (435)
T PRK05137 247 MT-F--APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-SPAIDTSPS-YSPDGSQIVFESDRS------GSPQ 315 (435)
T ss_pred cc-c--CcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC-CCCccCcee-EcCCCCEEEEEECCC------CCCe
Confidence 10 0 111223453 444322 12468899999887766522 111111111 223455444333211 1237
Q ss_pred EEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEc
Q 045071 337 LWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWI 402 (453)
Q Consensus 337 vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l 402 (453)
||.++......+.+..-... .........|+.|++.... ...+.++|+.++..+.+
T Consensus 316 Iy~~d~~g~~~~~lt~~~~~----------~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 316 LYVMNADGSNPRRISFGGGR----------YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERIL 373 (435)
T ss_pred EEEEECCCCCeEEeecCCCc----------ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEec
Confidence 88888655555554321110 0122234567788776543 35789999877766655
No 118
>PRK00178 tolB translocation protein TolB; Provisional
Probab=48.54 E-value=2.9e+02 Score=27.57 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=56.8
Q ss_pred CEEEEEECCCCcEEEeecCCccccCCCceeeeCCe-EEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHh
Q 045071 283 FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGK-LILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQF 361 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~ 361 (453)
..|..+|+.+++.+.+... ......+. ..-+|+ |+.... .. ....||.++..+++++++.....
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~-~~~~~~~~-~spDg~~i~f~s~-~~------g~~~iy~~d~~~g~~~~lt~~~~------ 331 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNH-PAIDTEPF-WGKDGRTLYFTSD-RG------GKPQIYKVNVNGGRAERVTFVGN------ 331 (430)
T ss_pred ceEEEEECCCCCeEEcccC-CCCcCCeE-ECCCCCEEEEEEC-CC------CCceEEEEECCCCCEEEeecCCC------
Confidence 4799999999888765321 11111111 223454 544321 11 12378888876677766532110
Q ss_pred hcccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEcCC
Q 045071 362 AEIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWIPR 404 (453)
Q Consensus 362 ~~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l~~ 404 (453)
..........|+.|++.... ...+.++|+.+++.+.+..
T Consensus 332 ----~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 332 ----YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ----CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC
Confidence 00111223467788776543 3468999999988877643
No 119
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=46.68 E-value=16 Score=28.26 Aligned_cols=25 Identities=20% Similarity=0.527 Sum_probs=22.8
Q ss_pred cccCCChHHHHHHHHhcCChhhhhh
Q 045071 49 RIWSKLPQRLLDRVLAFLPPPAFFR 73 (453)
Q Consensus 49 ~~w~~LP~dll~~IL~rLp~~~l~r 73 (453)
..|..||.|+-..||..|+-.+|..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999888764
No 120
>PRK04922 tolB translocation protein TolB; Provisional
Probab=46.41 E-value=3.2e+02 Score=27.43 Aligned_cols=114 Identities=12% Similarity=0.130 Sum_probs=60.6
Q ss_pred CC-EEEEEec--CCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeE
Q 045071 272 NG-KFYCMNY--SPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWA 348 (453)
Q Consensus 272 ~G-~lY~~~~--~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~ 348 (453)
+| .+++... ....|..+|+.+++.+.+.. .......+. ..-+|+-+++..... ...+||.++..+++.+
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~-~spDG~~l~f~sd~~------g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDTEPT-WAPDGKSIYFTSDRG------GRPQIYRVAASGGSAE 329 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeEECcc-CCCCccceE-ECCCCCEEEEEECCC------CCceEEEEECCCCCeE
Confidence 45 4554432 12479999999887655421 111111112 223555444443211 1247888887666666
Q ss_pred EEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEcC
Q 045071 349 EIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 349 ~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l~ 403 (453)
.+..-.. ..........|+.|++.... ...+.+||+.+++.+.+.
T Consensus 330 ~lt~~g~----------~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt 376 (433)
T PRK04922 330 RLTFQGN----------YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLT 376 (433)
T ss_pred EeecCCC----------CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECC
Confidence 5532111 00122334567888776543 346899999988887664
No 121
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=46.13 E-value=87 Score=30.20 Aligned_cols=105 Identities=14% Similarity=0.239 Sum_probs=59.3
Q ss_pred EEECCEEEEEe-cCCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCe
Q 045071 269 VQVNGKFYCMN-YSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLW 347 (453)
Q Consensus 269 v~~~G~lY~~~-~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W 347 (453)
|-++++ |.++ .....|-++|..+.++-.+ +..+.+....+.++|+|.|-|. .+ .+|++|+... +.-
T Consensus 326 Vdfd~k-yIVsASgDRTikvW~~st~efvRt---l~gHkRGIAClQYr~rlvVSGS-SD------ntIRlwdi~~--G~c 392 (499)
T KOG0281|consen 326 VDFDDK-YIVSASGDRTIKVWSTSTCEFVRT---LNGHKRGIACLQYRDRLVVSGS-SD------NTIRLWDIEC--GAC 392 (499)
T ss_pred eccccc-eEEEecCCceEEEEeccceeeehh---hhcccccceehhccCeEEEecC-CC------ceEEEEeccc--cHH
Confidence 446777 5444 3346889999999888554 2233444556778999986543 33 2689997663 222
Q ss_pred EEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCc
Q 045071 348 AEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKS 398 (453)
Q Consensus 348 ~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~ 398 (453)
. +|-+. .++ -+.|+..++.=.+.+.-.+++-+||+.+..
T Consensus 393 L---RvLeG-HEe--------LvRciRFd~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 393 L---RVLEG-HEE--------LVRCIRFDNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred H---HHHhc-hHH--------hhhheeecCceeeeccccceEEEEeccccc
Confidence 1 12110 011 123555555444443335777888877653
No 122
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=44.73 E-value=1.2e+02 Score=29.86 Aligned_cols=29 Identities=7% Similarity=0.072 Sum_probs=19.9
Q ss_pred CCcEEEeecCCccccCCCceeeeCCeEEEEEE
Q 045071 292 ANAWFNIQAPMRRFLRSPSLLDSNGKLILVAA 323 (453)
Q Consensus 292 ~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~ 323 (453)
.+.|+.++.+ ....-.++..+|++|++..
T Consensus 189 ~~~Wt~l~~~---~~~~~DIi~~kGkfYAvD~ 217 (373)
T PLN03215 189 GNVLKALKQM---GYHFSDIIVHKGQTYALDS 217 (373)
T ss_pred CCeeeEccCC---CceeeEEEEECCEEEEEcC
Confidence 3899988531 1123368889999999853
No 123
>PRK00178 tolB translocation protein TolB; Provisional
Probab=44.45 E-value=3.4e+02 Score=27.12 Aligned_cols=197 Identities=9% Similarity=0.053 Sum_probs=95.4
Q ss_pred eEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCC
Q 045071 170 LVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFS 249 (453)
Q Consensus 170 ll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~ 249 (453)
.|.+.........++++|..+++.+.+...... . ......+++-++++...... .....+|+.++ +
T Consensus 212 ~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~--~--~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~----~ 277 (430)
T PRK00178 212 RIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL--N--GAPAWSPDGSKLAFVLSKDG------NPEIYVMDLAS----R 277 (430)
T ss_pred EEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC--c--CCeEECCCCCEEEEEEccCC------CceEEEEECCC----C
Confidence 444443333334789999998887776543321 1 12233344445554332211 12335567766 5
Q ss_pred cccccCCCCCcccCCCCCeEE-ECC-EEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEe
Q 045071 250 LWGTTSSLPRLCSLESGRMVQ-VNG-KFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVE 325 (453)
Q Consensus 250 ~W~~~~~~p~~~~~~~~~~v~-~~G-~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~ 325 (453)
..+.+...+. .. ....+ -+| .+|+.... ...|..+|+.+++++.+.... .........-+|+.+++....
T Consensus 278 ~~~~lt~~~~---~~-~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 278 QLSRVTNHPA---ID-TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred CeEEcccCCC---Cc-CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEcc
Confidence 5554432211 01 11222 244 46665432 247889999988887763221 111111122244444433322
Q ss_pred ccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEcC
Q 045071 326 KSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 326 ~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l~ 403 (453)
. ....||.+|..++..+.+..-.. . ........|..|++.... ...+...|...+.=+.++
T Consensus 352 ~------~~~~l~~~dl~tg~~~~lt~~~~--------~---~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 352 D------GNFHVAAQDLQRGSVRILTDTSL--------D---ESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred C------CceEEEEEECCCCCEEEccCCCC--------C---CCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 1 13467888876666655433211 0 011223466777776543 345777787655444443
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=43.99 E-value=3.6e+02 Score=27.26 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=72.8
Q ss_pred eeeecCceEEEEecCCCCeeEEEEcCcccceecCCCCCCC--CCcceEEEEEcCCceEEEEEccCCCCcccccccceeEE
Q 045071 163 PASSSGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRP--RLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESF 240 (453)
Q Consensus 163 ~~~s~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~--r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evy 240 (453)
.++.+|--+++.++. .+-+++||-.|.+..++.++-.. +....+.+.-+ +--|..+|..+ ...+.
T Consensus 264 ~f~p~G~~~i~~s~r--rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd--~~fia~~G~~G---------~I~lL 330 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGR--RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHD--SNFIAIAGNNG---------HIHLL 330 (514)
T ss_pred eecCCCceEEEeccc--ceEEEEeeccccccccccCCCCcccchhheeEecCC--CCeEEEcccCc---------eEEee
Confidence 344444425544432 34689999999999888776431 22222222222 22333444331 12333
Q ss_pred EcccCCCCCcccccCCCCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCcee-eeCCeEE
Q 045071 241 HIDAGGFFSLWGTTSSLPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLL-DSNGKLI 319 (453)
Q Consensus 241 ds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv-~~~g~L~ 319 (453)
...+ +.|-..-.++. ... .-...-+|+..++......|+++|+..+.-...-.. ........++ ..+|.++
T Consensus 331 hakT----~eli~s~KieG--~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~yl 402 (514)
T KOG2055|consen 331 HAKT----KELITSFKIEG--VVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYL 402 (514)
T ss_pred hhhh----hhhhheeeecc--EEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceE
Confidence 4445 55544322221 000 001123555444443336899999998732211111 1222233343 4678877
Q ss_pred EEEEEeccCCCCCCcEEEEEeec
Q 045071 320 LVAAVEKSKLNVPKSLRLWSLQA 342 (453)
Q Consensus 320 vv~~~~~~~~~~~~~i~vw~ld~ 342 (453)
.+|... .-+.||.++.
T Consensus 403 A~GS~~-------GiVNIYd~~s 418 (514)
T KOG2055|consen 403 ATGSDS-------GIVNIYDGNS 418 (514)
T ss_pred EeccCc-------ceEEEeccch
Confidence 666432 2457887653
No 125
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=43.48 E-value=3e+02 Score=26.24 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=52.2
Q ss_pred CEEEEEECCCC-----cEEEeec-CCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHH
Q 045071 283 FSVLAYDISAN-----AWFNIQA-PMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQ 356 (453)
Q Consensus 283 ~~i~~yD~~~~-----~W~~i~~-p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~ 356 (453)
+.|+.|+..+. +++.+.. +.+. .-..+...+|+|++ +. + ..+.+|+++... ++.+++.+...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g--~V~ai~~~~~~lv~-~~-g-------~~l~v~~l~~~~-~l~~~~~~~~~ 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKG--PVTAICSFNGRLVV-AV-G-------NKLYVYDLDNSK-TLLKKAFYDSP 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS---EEEEEEETTEEEE-EE-T-------TEEEEEEEETTS-SEEEEEEE-BS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecC--cceEhhhhCCEEEE-ee-c-------CEEEEEEccCcc-cchhhheecce
Confidence 45677777764 4443311 1111 11246677888543 32 2 357889888643 58887777542
Q ss_pred HHHHhhcccCCCcEEEEeeCCEEEEEEcC-CCeEEEEECCCCceEEcC
Q 045071 357 LYAQFAEIEAGNGFDTIGHGEFIVIVIRG-SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~g~~I~l~~~~-~~~v~~Yd~~~~~W~~l~ 403 (453)
. ........+|+|++.... .-.++.||.+.++...+.
T Consensus 130 ~----------~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 130 F----------YITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVA 167 (321)
T ss_dssp S----------SEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEE
T ss_pred E----------EEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEE
Confidence 1 233444568888876432 224455676555454443
No 126
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=43.29 E-value=2.6e+02 Score=25.53 Aligned_cols=104 Identities=10% Similarity=0.112 Sum_probs=49.8
Q ss_pred EEEEEecCCCEEEEEECCCCcE-EEeecCCccccCCCce-eeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEe
Q 045071 274 KFYCMNYSPFSVLAYDISANAW-FNIQAPMRRFLRSPSL-LDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIE 351 (453)
Q Consensus 274 ~lY~~~~~~~~i~~yD~~~~~W-~~i~~p~~~~~~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~ 351 (453)
.+|+.......+..||+.+.+- ..+.... ....+ +.-+|++++++.... ..+.+| +..+. +.+.
T Consensus 86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~----~~~~~~~~~dg~~l~~~~~~~------~~~~~~--d~~~~--~~~~ 151 (300)
T TIGR03866 86 ILYIANEDDNLVTVIDIETRKVLAEIPVGV----EPEGMAVSPDGKIVVNTSETT------NMAHFI--DTKTY--EIVD 151 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCeEEeEeeCCC----CcceEEECCCCCEEEEEecCC------CeEEEE--eCCCC--eEEE
Confidence 4666554446899999987542 2222111 11122 234677777664321 112333 43222 2222
Q ss_pred ecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce
Q 045071 352 RMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW 399 (453)
Q Consensus 352 ~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W 399 (453)
.++.. .....+.....+..+++.....+.+.+||+++.+.
T Consensus 152 ~~~~~--------~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 152 NVLVD--------QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred EEEcC--------CCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence 22110 00012233335666766544467899999987643
No 127
>PTZ00420 coronin; Provisional
Probab=43.06 E-value=4.2e+02 Score=27.89 Aligned_cols=133 Identities=10% Similarity=0.127 Sum_probs=67.1
Q ss_pred CCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCC--Ccee---e--eCCeEEEEEEEeccCCCCCCcEEEEEeecCC
Q 045071 272 NGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRS--PSLL---D--SNGKLILVAAVEKSKLNVPKSLRLWSLQACG 344 (453)
Q Consensus 272 ~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~--~~lv---~--~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~ 344 (453)
+|.+...+.....|..||+.+++-... .. .+... ...+ . .+++.++.++..+. ..+.+.||.+....
T Consensus 178 dG~lLat~s~D~~IrIwD~Rsg~~i~t-l~--gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~---~~R~VkLWDlr~~~ 251 (568)
T PTZ00420 178 KGNLLSGTCVGKHMHIIDPRKQEIASS-FH--IHDGGKNTKNIWIDGLGGDDNYILSTGFSKN---NMREMKLWDLKNTT 251 (568)
T ss_pred CCCEEEEEecCCEEEEEECCCCcEEEE-Ee--cccCCceeEEEEeeeEcCCCCEEEEEEcCCC---CccEEEEEECCCCC
Confidence 566555554446799999998653211 11 11111 0111 1 34555555554432 12468999877421
Q ss_pred CCeEEEeecCHHHHHHhhcccCCCcEEEE--eeCCEEEEEEcCCCeEEEEECCCCceEEcCCCCCcCCCCCCCCCCCCCc
Q 045071 345 TLWAEIERMPQQLYAQFAEIEAGNGFDTI--GHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPYVQANNCGGNYGDGEG 422 (453)
Q Consensus 345 ~~W~~v~~mp~~~~~~~~~~~~~~~~~~~--~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~~~p~~~~~~~~~~~~~~~~ 422 (453)
+-.....+... ...+... ...+.+|+.+.+...+.+||...+....+.... . ..
T Consensus 252 -~pl~~~~ld~~----------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~---s----------~~ 307 (568)
T PTZ00420 252 -SALVTMSIDNA----------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK---S----------CS 307 (568)
T ss_pred -CceEEEEecCC----------ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc---c----------CC
Confidence 11111122110 0111111 224667777767888999999887655553221 1 12
Q ss_pred eeEEEEeccccC
Q 045071 423 ELHGFAYEPRLA 434 (453)
Q Consensus 423 ~~~~~~f~P~l~ 434 (453)
...+++|-|...
T Consensus 308 p~~g~~f~Pkr~ 319 (568)
T PTZ00420 308 PFRSFGFLPKQI 319 (568)
T ss_pred CccceEEccccc
Confidence 456788888644
No 128
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=42.10 E-value=4e+02 Score=27.33 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=33.0
Q ss_pred eEEEcccCCCCCcccccCCCC---CcccCCCCCeEEEC-CEEEEEecCCCEEEEEECCCC--cEEEe
Q 045071 238 ESFHIDAGGFFSLWGTTSSLP---RLCSLESGRMVQVN-GKFYCMNYSPFSVLAYDISAN--AWFNI 298 (453)
Q Consensus 238 evyds~~~~~~~~W~~~~~~p---~~~~~~~~~~v~~~-G~lY~~~~~~~~i~~yD~~~~--~W~~i 298 (453)
..+|..+|. ..|+.-...+ ..........++.+ +++|+.+.. ..|.++|.+++ .|+.-
T Consensus 74 ~AlD~~tG~--~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~-g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 74 FALDAATGK--VLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFD-GRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEEECCCCh--hhceeCCCCCccccccccccCCcEEccCCeEEEecCC-CeEEEEECCCCCEeeeec
Confidence 555666655 6787632221 00011112234456 899987654 68999999875 57653
No 129
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=42.07 E-value=3.1e+02 Score=26.01 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=27.0
Q ss_pred CEEEEEECCCCcEEEeecCCccccC---CCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeec
Q 045071 283 FSVLAYDISANAWFNIQAPMRRFLR---SPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQA 342 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~i~~p~~~~~~---~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~ 342 (453)
....-+|+++++=...-. .+.. ...+...+++.|+-|+..+ ..++|.+..
T Consensus 166 ~TCalWDie~g~~~~~f~---GH~gDV~slsl~p~~~ntFvSg~cD~-------~aklWD~R~ 218 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQVFH---GHTGDVMSLSLSPSDGNTFVSGGCDK-------SAKLWDVRS 218 (343)
T ss_pred ceEEEEEcccceEEEEec---CCcccEEEEecCCCCCCeEEeccccc-------ceeeeeccC
Confidence 466778888876543311 1111 1122334788888776554 236776553
No 130
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=42.01 E-value=3.2e+02 Score=26.14 Aligned_cols=141 Identities=11% Similarity=0.119 Sum_probs=58.6
Q ss_pred eEEEcccCCCCCcccccCC-CCCcccCCCCCeEEECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceee-eC
Q 045071 238 ESFHIDAGGFFSLWGTTSS-LPRLCSLESGRMVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLD-SN 315 (453)
Q Consensus 238 evyds~~~~~~~~W~~~~~-~p~~~~~~~~~~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~-~~ 315 (453)
.+|....|. .+|..... .+....+.-....+.++..|+++.. ..|+.-.=....|+.++.+.+.......+.. -+
T Consensus 38 ~il~T~DGG--~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~ 114 (302)
T PF14870_consen 38 TILKTTDGG--KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGD 114 (302)
T ss_dssp EEEEESSTT--SS-EE-----S-----EEEEEEEETTEEEEEEET-TEEEEESSTTSS-EE----TT-SS-EEEEEEEET
T ss_pred EEEEECCCC--ccccccccCCCccceeeEEEEEecCCceEEEcCC-ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCC
Confidence 556655555 78997642 1110011101123345666665543 4555555567899998654221111122333 34
Q ss_pred CeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEE-Ee-eCCEEEEEEcCCCeEEEEE
Q 045071 316 GKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDT-IG-HGEFIVIVIRGSDKALLFD 393 (453)
Q Consensus 316 g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~-~~-~g~~I~l~~~~~~~v~~Yd 393 (453)
+...+++. . =.||+-......|+.+..=.. ..+.- .. .++.++++.....-....|
T Consensus 115 ~~~~l~~~---~-------G~iy~T~DgG~tW~~~~~~~~------------gs~~~~~r~~dG~~vavs~~G~~~~s~~ 172 (302)
T PF14870_consen 115 GSAELAGD---R-------GAIYRTTDGGKTWQAVVSETS------------GSINDITRSSDGRYVAVSSRGNFYSSWD 172 (302)
T ss_dssp TEEEEEET---T---------EEEESSTTSSEEEEE-S----------------EEEEEE-TTS-EEEEETTSSEEEEE-
T ss_pred CcEEEEcC---C-------CcEEEeCCCCCCeeEcccCCc------------ceeEeEEECCCCcEEEEECcccEEEEec
Confidence 55555442 1 178888888889997654221 01111 11 2333333332233445667
Q ss_pred CCCCceEEcC
Q 045071 394 LCMKSWQWIP 403 (453)
Q Consensus 394 ~~~~~W~~l~ 403 (453)
.....|+...
T Consensus 173 ~G~~~w~~~~ 182 (302)
T PF14870_consen 173 PGQTTWQPHN 182 (302)
T ss_dssp TT-SS-EEEE
T ss_pred CCCccceEEc
Confidence 7777787654
No 131
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=38.99 E-value=86 Score=19.14 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=19.8
Q ss_pred eCCEEEEEEcCCCeEEEEECCCCce
Q 045071 375 HGEFIVIVIRGSDKALLFDLCMKSW 399 (453)
Q Consensus 375 ~g~~I~l~~~~~~~v~~Yd~~~~~W 399 (453)
.++++|+.+...+.+.++|..+.+.
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeE
Confidence 3678999887788999999976654
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=38.78 E-value=4.3e+02 Score=26.67 Aligned_cols=31 Identities=10% Similarity=0.213 Sum_probs=23.2
Q ss_pred CcEEEEe--eCCEEEEEEcCCCeEEEEECCCCc
Q 045071 368 NGFDTIG--HGEFIVIVIRGSDKALLFDLCMKS 398 (453)
Q Consensus 368 ~~~~~~~--~g~~I~l~~~~~~~v~~Yd~~~~~ 398 (453)
..+.|.+ .++.+.+.+...+++.+||+.+++
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 3566765 356677777778999999999875
No 133
>PRK04922 tolB translocation protein TolB; Provisional
Probab=37.33 E-value=4.4e+02 Score=26.42 Aligned_cols=197 Identities=9% Similarity=0.021 Sum_probs=90.5
Q ss_pred eEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCC
Q 045071 170 LVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFS 249 (453)
Q Consensus 170 ll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~ 249 (453)
.|++.........++++|..+++...+...+.. . .+....+++-+|++...... .....+++..+ +
T Consensus 217 ~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~--~--~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~----g 282 (433)
T PRK04922 217 KLAYVSFERGRSAIYVQDLATGQRELVASFRGI--N--GAPSFSPDGRRLALTLSRDG------NPEIYVMDLGS----R 282 (433)
T ss_pred EEEEEecCCCCcEEEEEECCCCCEEEeccCCCC--c--cCceECCCCCEEEEEEeCCC------CceEEEEECCC----C
Confidence 344443333345789999988877666443221 1 12233344445554432211 12335556655 3
Q ss_pred cccccCCCCCcccCCCCCeEE-ECC-EEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEe
Q 045071 250 LWGTTSSLPRLCSLESGRMVQ-VNG-KFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVE 325 (453)
Q Consensus 250 ~W~~~~~~p~~~~~~~~~~v~-~~G-~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~ 325 (453)
.-+.+..... .. ....+ -+| .+++.... ...|..+|..+++.+.+... ......+. ..-+|+.+++....
T Consensus 283 ~~~~lt~~~~---~~-~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~-~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 283 QLTRLTNHFG---ID-TEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARAS-VSPDGKKIAMVHGS 356 (433)
T ss_pred CeEECccCCC---Cc-cceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEE-ECCCCCEEEEEECC
Confidence 3333321110 00 11223 244 35555432 23588889988888766321 11111112 22245544433222
Q ss_pred ccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEcC
Q 045071 326 KSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 326 ~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l~ 403 (453)
. ....||.++..++..+.+..-+. .........|..|++.... ...+..+|...+.-+.++
T Consensus 357 ~------~~~~I~v~d~~~g~~~~Lt~~~~-----------~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 357 G------GQYRIAVMDLSTGSVRTLTPGSL-----------DESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred C------CceeEEEEECCCCCeEECCCCCC-----------CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcc
Confidence 1 12356666655555554332110 0112234467777776543 456888888765544453
No 134
>PTZ00421 coronin; Provisional
Probab=36.69 E-value=4.9e+02 Score=26.82 Aligned_cols=116 Identities=14% Similarity=0.222 Sum_probs=53.5
Q ss_pred CCEEEEEecCCCEEEEEECCCCcEE-EeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEE
Q 045071 272 NGKFYCMNYSPFSVLAYDISANAWF-NIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEI 350 (453)
Q Consensus 272 ~G~lY~~~~~~~~i~~yD~~~~~W~-~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v 350 (453)
+|.+.+.+.....|..||+.+++-. .+.... .......+...++.+++..+.... ....+.+|.+..........
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~~~~~ivt~G~s~s---~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA-SAKSQRCLWAKRKDLIITLGCSKS---QQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCC-CCcceEEEEcCCCCeEEEEecCCC---CCCeEEEEeCCCCCCceeEe
Confidence 4554444444468899999986532 121110 000000111223344444433221 12468999876422222111
Q ss_pred eecCHHHHHHhhcccCCCcEE-EEeeCCEEEEEEcCCCeEEEEECCCCceEE
Q 045071 351 ERMPQQLYAQFAEIEAGNGFD-TIGHGEFIVIVIRGSDKALLFDLCMKSWQW 401 (453)
Q Consensus 351 ~~mp~~~~~~~~~~~~~~~~~-~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~ 401 (453)
.+.. ....... +...++.+|+.+...+.|.+||+.+++...
T Consensus 255 -~~d~---------~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 255 -DLDQ---------SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred -ccCC---------CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 1111 0000111 123456677665456788999998876543
No 135
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=34.45 E-value=3e+02 Score=26.04 Aligned_cols=88 Identities=15% Similarity=0.157 Sum_probs=45.1
Q ss_pred eCCeEEEEEEEeccCCCC---CCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEe-e----CCEEEEEEcC
Q 045071 314 SNGKLILVAAVEKSKLNV---PKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIG-H----GEFIVIVIRG 385 (453)
Q Consensus 314 ~~g~L~vv~~~~~~~~~~---~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~-~----g~~I~l~~~~ 385 (453)
-.|+|.|+..-.-+.... ...-+|+.+|..+++=.+.-.+|..+.. .......+.+-. . +..+||....
T Consensus 10 ~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~---~~s~lndl~VD~~~~~~~~~~aYItD~~ 86 (287)
T PF03022_consen 10 ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP---PDSFLNDLVVDVRDGNCDDGFAYITDSG 86 (287)
T ss_dssp TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS----TCGGEEEEEEECTTTTS-SEEEEEEETT
T ss_pred CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc---cccccceEEEEccCCCCcceEEEEeCCC
Confidence 457888776311111000 1234677777777765555566653322 000000111111 1 1489998877
Q ss_pred CCeEEEEECCCC-ceEEcCC
Q 045071 386 SDKALLFDLCMK-SWQWIPR 404 (453)
Q Consensus 386 ~~~v~~Yd~~~~-~W~~l~~ 404 (453)
...+++||+.++ .|+.+..
T Consensus 87 ~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 87 GPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp TCEEEEEETTTTEEEEEETC
T ss_pred cCcEEEEEccCCcEEEEecC
Confidence 789999999996 5776655
No 136
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=33.32 E-value=2.1e+02 Score=26.59 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=36.1
Q ss_pred EEECCEEEEEecC------CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEE
Q 045071 269 VQVNGKFYCMNYS------PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAV 324 (453)
Q Consensus 269 v~~~G~lY~~~~~------~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~ 324 (453)
-+.+|++|..+.. ...+..-+.....|+.++.|.-.+..+..++..++.||+++..
T Consensus 197 kyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 197 KYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE-
T ss_pred hhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEecc
Confidence 4579999998642 1356777888889999988855555566677889999999864
No 137
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=32.53 E-value=1.2e+02 Score=18.48 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=17.3
Q ss_pred CEEEEEEcCCCeEEEEECCCCceEE
Q 045071 377 EFIVIVIRGSDKALLFDLCMKSWQW 401 (453)
Q Consensus 377 ~~I~l~~~~~~~v~~Yd~~~~~W~~ 401 (453)
|.||+. ...+.+.++|.++++-.|
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEEE
Confidence 456665 447899999999986433
No 138
>PRK04792 tolB translocation protein TolB; Provisional
Probab=32.37 E-value=5.4e+02 Score=26.00 Aligned_cols=196 Identities=4% Similarity=-0.030 Sum_probs=94.9
Q ss_pred eEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCC
Q 045071 170 LVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFS 249 (453)
Q Consensus 170 ll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~ 249 (453)
.|++.........++++|..+++.+.+...+.. .. .....+++-+++++..... .....+++.++ +
T Consensus 231 ~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~--~~--~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~t----g 296 (448)
T PRK04792 231 KLAYVSFENRKAEIFVQDIYTQVREKVTSFPGI--NG--APRFSPDGKKLALVLSKDG------QPEIYVVDIAT----K 296 (448)
T ss_pred EEEEEEecCCCcEEEEEECCCCCeEEecCCCCC--cC--CeeECCCCCEEEEEEeCCC------CeEEEEEECCC----C
Confidence 444443333345799999998877666543321 11 2333444445555433211 12234556666 5
Q ss_pred cccccCCCCCcccCCCCCeEE-ECC-EEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEe
Q 045071 250 LWGTTSSLPRLCSLESGRMVQ-VNG-KFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVE 325 (453)
Q Consensus 250 ~W~~~~~~p~~~~~~~~~~v~-~~G-~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~ 325 (453)
..+.+..... .. ....+ -+| .+++.... ...|..+|+.+++++.+..... ....+ ...-+|+.+++....
T Consensus 297 ~~~~lt~~~~---~~-~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~-~~~~~-~~SpDG~~l~~~~~~ 370 (448)
T PRK04792 297 ALTRITRHRA---ID-TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE-QNLGG-SITPDGRSMIMVNRT 370 (448)
T ss_pred CeEECccCCC---Cc-cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC-CCcCe-eECCCCCEEEEEEec
Confidence 5554432111 00 11222 244 45555432 2478999999998877632111 11111 223355544443322
Q ss_pred ccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEc
Q 045071 326 KSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWI 402 (453)
Q Consensus 326 ~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l 402 (453)
. ...+||.++..++....+..-.. . ........|..|++.... ...+.++|...+.-+.+
T Consensus 371 ~------g~~~I~~~dl~~g~~~~lt~~~~-------d----~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 371 N------GKFNIARQDLETGAMQVLTSTRL-------D----ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred C------CceEEEEEECCCCCeEEccCCCC-------C----CCceECCCCCEEEEEEecCCceEEEEEECCCCceEEC
Confidence 1 24588999877666554432110 0 011234467777775543 33577778754433334
No 139
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=32.37 E-value=4.7e+02 Score=25.24 Aligned_cols=130 Identities=11% Similarity=0.028 Sum_probs=67.3
Q ss_pred CCeEEECCEEEEEecCCCEEEEEECCC---CcEEE--eecCCccccCC-CceeeeCCeEEEEEEEeccCCCCCCcEEEEE
Q 045071 266 GRMVQVNGKFYCMNYSPFSVLAYDISA---NAWFN--IQAPMRRFLRS-PSLLDSNGKLILVAAVEKSKLNVPKSLRLWS 339 (453)
Q Consensus 266 ~~~v~~~G~lY~~~~~~~~i~~yD~~~---~~W~~--i~~p~~~~~~~-~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ 339 (453)
++.++.++.+++++..-.++..+|+.- -.|+- |..-.|..+.. -.|+..+|+..-|..+... +...-|+
T Consensus 106 Hdia~~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~s-----D~~~gWR 180 (335)
T TIGR03032 106 HDLALGAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQS-----DVADGWR 180 (335)
T ss_pred hheeecCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeecc-----CCccccc
Confidence 455666667777766556777777764 34531 11001111111 1456678888776665542 1122233
Q ss_pred eecCCCCeEEEeecCH-H-HHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCceEEcCCCCC
Q 045071 340 LQACGTLWAEIERMPQ-Q-LYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSWQWIPRCPY 407 (453)
Q Consensus 340 ld~~~~~W~~v~~mp~-~-~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W~~l~~~p~ 407 (453)
-+...+.- +-.++. + +..++.-.+ .--.+++++|+..-..+++..+|+++++.+.+..+|-
T Consensus 181 ~~~~~gG~--vidv~s~evl~~GLsmPh-----SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~vpG 243 (335)
T TIGR03032 181 EGRRDGGC--VIDIPSGEVVASGLSMPH-----SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG 243 (335)
T ss_pred ccccCCeE--EEEeCCCCEEEcCccCCc-----CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEECCC
Confidence 22111110 111111 0 000000000 0124689999987778999999999999988877773
No 140
>PRK04043 tolB translocation protein TolB; Provisional
Probab=31.59 E-value=5.5e+02 Score=25.79 Aligned_cols=201 Identities=7% Similarity=0.021 Sum_probs=104.1
Q ss_pred eEEEEecCCCCeeEEEEcCcccceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCC
Q 045071 170 LVCWVSDHAGAKTLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFS 249 (453)
Q Consensus 170 ll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~ 249 (453)
++++.........++++|..|++-+.|...+. .. ......+++-++++...... .....+++..+ +
T Consensus 202 ~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g--~~--~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~----g 267 (419)
T PRK04043 202 AFYYTSYGERKPTLYKYNLYTGKKEKIASSQG--ML--VVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNT----K 267 (419)
T ss_pred EEEEEEccCCCCEEEEEECCCCcEEEEecCCC--cE--EeeEECCCCCEEEEEEccCC------CcEEEEEECCC----C
Confidence 35543333224589999999988777654221 11 11223344445554433211 12345566666 6
Q ss_pred cccccCCCCCcccCCCCCeEE-ECC-EEEEEecC--CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEe
Q 045071 250 LWGTTSSLPRLCSLESGRMVQ-VNG-KFYCMNYS--PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVE 325 (453)
Q Consensus 250 ~W~~~~~~p~~~~~~~~~~v~-~~G-~lY~~~~~--~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~ 325 (453)
.++.+...+. .. ..+.+ -+| .||+.... ...|..+|+++++.+.+... . .... ...-+|+..++....
T Consensus 268 ~~~~LT~~~~---~d-~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g-~~~~-~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 268 TLTQITNYPG---ID-VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--G-KNNS-SVSTYKNYIVYSSRE 339 (419)
T ss_pred cEEEcccCCC---cc-CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--C-CcCc-eECCCCCEEEEEEcC
Confidence 6776644332 01 11222 345 57877543 23799999999888665321 1 1122 233355554444322
Q ss_pred ccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEcC
Q 045071 326 KSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 326 ~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l~ 403 (453)
...-......+||.++.+++.+..+..-.. . ........|..|++.... ...+...+++.+.=..++
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~----------~-~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYIRRLTANGV----------N-QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCeEECCCCCC----------c-CCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEee
Confidence 210000123688988887777766544211 0 112234567778776543 346888899876555555
No 141
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=31.02 E-value=2.9e+02 Score=28.70 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=17.1
Q ss_pred EEEEEecCCCEEEEEECCCCcE
Q 045071 274 KFYCMNYSPFSVLAYDISANAW 295 (453)
Q Consensus 274 ~lY~~~~~~~~i~~yD~~~~~W 295 (453)
-+|+.+.. ..|..||++.+.|
T Consensus 147 Dly~~gsg-~evYRlNLEqGrf 167 (703)
T KOG2321|consen 147 DLYLVGSG-SEVYRLNLEQGRF 167 (703)
T ss_pred cEEEeecC-cceEEEEcccccc
Confidence 47776655 5899999999999
No 142
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=28.31 E-value=5.6e+02 Score=24.89 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=80.6
Q ss_pred ceeEEEcccCCCCCcccccCCCCCcccCCCCCeEEE-CC-EEEEEecCCCEEE--EEECCCCcEEEeecC--Ccccc---
Q 045071 236 SSESFHIDAGGFFSLWGTTSSLPRLCSLESGRMVQV-NG-KFYCMNYSPFSVL--AYDISANAWFNIQAP--MRRFL--- 306 (453)
Q Consensus 236 ~~evyds~~~~~~~~W~~~~~~p~~~~~~~~~~v~~-~G-~lY~~~~~~~~i~--~yD~~~~~W~~i~~p--~~~~~--- 306 (453)
.+.+|+.+. +.-+.....-..........+|+ +| ..|++..-...|. .||...+++++++.- +|...
T Consensus 168 ri~~y~~~d----g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 168 RIFLYDLDD----GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred eEEEEEccc----CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 457788776 33333221100001122345665 34 4888877555564 555555888877431 23222
Q ss_pred -CCCce-eeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEc
Q 045071 307 -RSPSL-LDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIR 384 (453)
Q Consensus 307 -~~~~l-v~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~ 384 (453)
....+ +.-+|+-+.+.-.. .++|.++..++.++.-+.+..-+.+- ...+.|.....|++++....
T Consensus 244 ~~~aaIhis~dGrFLYasNRg------~dsI~~f~V~~~~g~L~~~~~~~teg-------~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRG------HDSIAVFSVDPDGGKLELVGITPTEG-------QFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred CceeEEEECCCCCEEEEecCC------CCeEEEEEEcCCCCEEEEEEEeccCC-------cCCccceeCCCCCEEEEEcc
Confidence 11222 22345544444222 24788899998777665555444310 01234555556777777766
Q ss_pred CCCeEEEE--ECCCCceEEcCC
Q 045071 385 GSDKALLF--DLCMKSWQWIPR 404 (453)
Q Consensus 385 ~~~~v~~Y--d~~~~~W~~l~~ 404 (453)
....+.+| |.++++...+..
T Consensus 311 ~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 311 KSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCCcEEEEEEcCCCceEEeccc
Confidence 56667777 455566776654
No 143
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=28.28 E-value=6.1e+02 Score=25.32 Aligned_cols=136 Identities=11% Similarity=0.082 Sum_probs=0.0
Q ss_pred cceecCCCCCCCCCcceEEEEEcCCceEEEEEccCCCCcccccccceeEEEcccCCCCCcccccCC---CCCcccCCCCC
Q 045071 191 GSLSQLPPTLRPRLFPSIGLKVTPTAVDVTVAGDDLISPYAVKNLSSESFHIDAGGFFSLWGTTSS---LPRLCSLESGR 267 (453)
Q Consensus 191 ~~w~~LP~~~~~r~~~~~~~~~~~~~ykvv~~g~~~~~~~~~~~~~~evyds~~~~~~~~W~~~~~---~p~~~~~~~~~ 267 (453)
++|++++.+..+...-.---....+.-+-+++|... .++....+. .+|+.... ......+.-..
T Consensus 75 ~~W~q~~~p~~~~~~L~~V~F~~~d~~~GwAVG~~G-----------~IL~T~DGG--~tW~~~~~~~~~~~~~~~~l~~ 141 (398)
T PLN00033 75 SEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQ-----------TLLETKDGG--KTWVPRSIPSAEDEDFNYRFNS 141 (398)
T ss_pred CccEEeecCCCCCCceEEEEeccCCCCEEEEEcCCC-----------EEEEEcCCC--CCceECccCcccccccccceee
Q ss_pred eEEECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceeeeCCe-EEEEEEEeccCCCCCCcEEEEEeecCCCC
Q 045071 268 MVQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGK-LILVAAVEKSKLNVPKSLRLWSLQACGTL 346 (453)
Q Consensus 268 ~v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~~~~ 346 (453)
..+.++..|.++.. ..|+.=+-....|+.+..+.........+..+++. .++++... .||+-+.....
T Consensus 142 v~f~~~~g~~vG~~-G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G----------~v~~S~D~G~t 210 (398)
T PLN00033 142 ISFKGKEGWIIGKP-AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDEG----------AIYVTSNAGRN 210 (398)
T ss_pred eEEECCEEEEEcCc-eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEeccc----------eEEEECCCCCC
Q ss_pred eEEE
Q 045071 347 WAEI 350 (453)
Q Consensus 347 W~~v 350 (453)
|+.+
T Consensus 211 W~~~ 214 (398)
T PLN00033 211 WKAA 214 (398)
T ss_pred ceEc
No 144
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=28.04 E-value=5.4e+02 Score=24.62 Aligned_cols=53 Identities=15% Similarity=0.236 Sum_probs=32.2
Q ss_pred ECCEEEEEecC-CCEEEEEECCCCcEEEeecCCccccCCCcee-eeCCeEEEEEEE
Q 045071 271 VNGKFYCMNYS-PFSVLAYDISANAWFNIQAPMRRFLRSPSLL-DSNGKLILVAAV 324 (453)
Q Consensus 271 ~~G~lY~~~~~-~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv-~~~g~L~vv~~~ 324 (453)
-+|.+|+.... ...|.+|+++...-..+..|.+.. .++.+. ...+.||+....
T Consensus 222 adG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~-t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRP-TNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCCCEEEecccCCceEEEECCCCcEEEEEECCCCCC-ccceEeCCCcCEEEEEecC
Confidence 46787754332 248999999977777777774321 222222 234678876653
No 145
>PF13919 ASXH: Asx homology domain
Probab=27.90 E-value=22 Score=29.58 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=33.2
Q ss_pred ccccccCCChHHHHHHHHhcCChhhhh--------------------hhhhccccccccccCccch
Q 045071 46 MDSRIWSKLPQRLLDRVLAFLPPPAFF--------------------RARAVCKRWYGLLFSNSFL 91 (453)
Q Consensus 46 ~~~~~w~~LP~dll~~IL~rLp~~~l~--------------------r~r~VCK~W~~~i~s~~F~ 91 (453)
.++..|..||.+--.+||..||..+.. -|+..|..|+..+.+..|-
T Consensus 39 ~N~~tw~~L~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G~~~ 104 (138)
T PF13919_consen 39 LNPETWSCLPEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEGEFD 104 (138)
T ss_pred hCHHHHhcCCHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcCCCC
Confidence 446789999999999999999976542 2455566666666555543
No 146
>PRK10115 protease 2; Provisional
Probab=27.66 E-value=8.1e+02 Score=26.52 Aligned_cols=117 Identities=9% Similarity=0.073 Sum_probs=62.6
Q ss_pred EECCEEEEEecC---CCEEEEEECC-CCcEEEeecCCcc-ccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCC
Q 045071 270 QVNGKFYCMNYS---PFSVLAYDIS-ANAWFNIQAPMRR-FLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACG 344 (453)
Q Consensus 270 ~~~G~lY~~~~~---~~~i~~yD~~-~~~W~~i~~p~~~-~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~ 344 (453)
..++.+|+.+.. ...|+..++. .++|+.+-.+... ... .+...++.|++...... .-+++.++...
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~--~~~~~~~~l~~~~~~~g-------~~~l~~~~~~~ 347 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLE--GFTLFTDWLVVEERQRG-------LTSLRQINRKT 347 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEE--EEEEECCEEEEEEEeCC-------EEEEEEEcCCC
Confidence 346788988643 3578888888 5789887433221 111 22334677776554322 23667776533
Q ss_pred CCeEEEeecCHHHHHHhhcccCCCcEEEE--eeCCEEEEEEcC---CCeEEEEECCCCceEEcCC
Q 045071 345 TLWAEIERMPQQLYAQFAEIEAGNGFDTI--GHGEFIVIVIRG---SDKALLFDLCMKSWQWIPR 404 (453)
Q Consensus 345 ~~W~~v~~mp~~~~~~~~~~~~~~~~~~~--~~g~~I~l~~~~---~~~v~~Yd~~~~~W~~l~~ 404 (453)
.....+. ++... ....+... ..++.+++...+ ...++.||+.+++|+.+..
T Consensus 348 ~~~~~l~-~~~~~--------~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 348 REVIGIA-FDDPA--------YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CceEEec-CCCCc--------eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 3333332 11100 00000111 123556665443 5789999999988887643
No 147
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=26.04 E-value=4.1e+02 Score=26.19 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=55.6
Q ss_pred CEEEEEecCCCEEEEEECCCCc-EEEeecCCccccCCCcee-eeCCe-EEEEEEEeccCCCCCCcEEEEEeecCCCCeEE
Q 045071 273 GKFYCMNYSPFSVLAYDISANA-WFNIQAPMRRFLRSPSLL-DSNGK-LILVAAVEKSKLNVPKSLRLWSLQACGTLWAE 349 (453)
Q Consensus 273 G~lY~~~~~~~~i~~yD~~~~~-W~~i~~p~~~~~~~~~lv-~~~g~-L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~ 349 (453)
+.+|+.....+.+.+.|.++.+ -..++..-. . ...++ .-+|+ +|+.+. + ..+. .+|..+.+ .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~--~-h~~~~~s~Dgr~~yv~~r--d------g~vs--viD~~~~~--~ 70 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGA--P-HAGLKFSPDGRYLYVANR--D------GTVS--VIDLATGK--V 70 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STT--E-EEEEE-TT-SSEEEEEET--T------SEEE--EEETTSSS--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCC--c-eeEEEecCCCCEEEEEcC--C------CeEE--EEECCccc--E
Confidence 4566666656789999999865 344433211 1 11122 23455 555431 1 1334 44543333 5
Q ss_pred EeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeEEEEECCCCce-EEcC
Q 045071 350 IERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKALLFDLCMKSW-QWIP 403 (453)
Q Consensus 350 v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v~~Yd~~~~~W-~~l~ 403 (453)
+.+++... ...++.....|.++++.++..+.+.++|.++.+- +.++
T Consensus 71 v~~i~~G~--------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 71 VATIKVGG--------NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-SS--------EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred EEEEecCC--------CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 55554310 0123444456888998887789999999988653 3344
No 148
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=25.67 E-value=1.6e+02 Score=23.40 Aligned_cols=40 Identities=8% Similarity=0.101 Sum_probs=24.0
Q ss_pred eEEEEcCcccceecCCCCCCCCCcceEEEEEcC--CceEEEEEc
Q 045071 182 TLILCNPVTGSLSQLPPTLRPRLFPSIGLKVTP--TAVDVTVAG 223 (453)
Q Consensus 182 ~~~v~NP~T~~w~~LP~~~~~r~~~~~~~~~~~--~~ykvv~~g 223 (453)
.+.++||.|+.|...-.- +.....+.+..++ +.|+|+-..
T Consensus 10 ~Vm~~d~~tk~W~P~~~~--~~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKWVPAGGG--SQGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcEEcCCCC--CCCcceEEEEEcCCCCEEEEEEee
Confidence 678899999999654331 2233344555443 457776543
No 149
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.50 E-value=1.9e+02 Score=26.01 Aligned_cols=72 Identities=15% Similarity=0.249 Sum_probs=43.7
Q ss_pred ceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhhcccCCCcEEEEeeCCEEEEEEcCCCeE
Q 045071 310 SLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFAEIEAGNGFDTIGHGEFIVIVIRGSDKA 389 (453)
Q Consensus 310 ~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~~~~~~~~~~~~~~g~~I~l~~~~~~~v 389 (453)
.|.-.+|+|+.-.+.-+ ...|++|.+..+...|++--. |+..|- . + ..-.||.+|......+..
T Consensus 50 GL~~~~g~i~esTG~yg-----~S~ir~~~L~~gq~~~s~~l~-~~~~Fg---E-----G--it~~gd~~y~LTw~egva 113 (262)
T COG3823 50 GLEYLDGHILESTGLYG-----FSKIRVSDLTTGQEIFSEKLA-PDTVFG---E-----G--ITKLGDYFYQLTWKEGVA 113 (262)
T ss_pred ceeeeCCEEEEeccccc-----cceeEEEeccCceEEEEeecC-Cccccc---c-----c--eeeccceEEEEEecccee
Confidence 46667888887554322 236788888765666765222 343331 1 1 223478888876666777
Q ss_pred EEEECCCC
Q 045071 390 LLFDLCMK 397 (453)
Q Consensus 390 ~~Yd~~~~ 397 (453)
+.||..+-
T Consensus 114 f~~d~~t~ 121 (262)
T COG3823 114 FKYDADTL 121 (262)
T ss_pred EEEChHHh
Confidence 88888653
No 150
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=24.37 E-value=1.5e+02 Score=17.89 Aligned_cols=22 Identities=9% Similarity=0.374 Sum_probs=17.3
Q ss_pred ECCEEEEEecCCCEEEEEECCC
Q 045071 271 VNGKFYCMNYSPFSVLAYDISA 292 (453)
Q Consensus 271 ~~G~lY~~~~~~~~i~~yD~~~ 292 (453)
.++.+||.......|.+++...
T Consensus 19 ~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 19 IEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred cCCEEEEEeCCCCEEEEEeCCC
Confidence 4688999987777888887764
No 151
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.10 E-value=3.5e+02 Score=27.10 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCEEEEEecCCCEEEEEECCC-CcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEE
Q 045071 272 NGKFYCMNYSPFSVLAYDISA-NAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEI 350 (453)
Q Consensus 272 ~G~lY~~~~~~~~i~~yD~~~-~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v 350 (453)
||..-....+..+|..+|+++ ..+..+..+.-. .........-|+.+.+++ ..+.||.++..+.+|.++
T Consensus 400 NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g---------~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 400 NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAG---------SDLQVYICKKKTKSWTEI 469 (506)
T ss_pred CceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeec---------ceeEEEEEecccccceee
Q ss_pred eecCH
Q 045071 351 ERMPQ 355 (453)
Q Consensus 351 ~~mp~ 355 (453)
..++.
T Consensus 470 ~~~~~ 474 (506)
T KOG0289|consen 470 KELAD 474 (506)
T ss_pred ehhhh
No 152
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=23.02 E-value=5.2e+02 Score=26.55 Aligned_cols=24 Identities=25% Similarity=0.606 Sum_probs=17.0
Q ss_pred eCCeEEEEEEEeccCCCCCCcEEEEEeecCC
Q 045071 314 SNGKLILVAAVEKSKLNVPKSLRLWSLQACG 344 (453)
Q Consensus 314 ~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~ 344 (453)
-+|+-++||+.. .++.||.|.-.+
T Consensus 475 pdgrtLivGGea-------stlsiWDLAapT 498 (705)
T KOG0639|consen 475 PDGRTLIVGGEA-------STLSIWDLAAPT 498 (705)
T ss_pred CCCceEEecccc-------ceeeeeeccCCC
Confidence 478888888752 367999887543
No 153
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=22.73 E-value=7.6e+02 Score=24.52 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=21.2
Q ss_pred cCceEEEEecCCCCeeEEEEcCcccceecCCCCC
Q 045071 167 SGGLVCWVSDHAGAKTLILCNPVTGSLSQLPPTL 200 (453)
Q Consensus 167 ~~Gll~~~~~~~~~~~~~v~NP~T~~w~~LP~~~ 200 (453)
.+-.|++.+...+..+++..|..|++-++|-.-+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~ 79 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP 79 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCC
Confidence 3446777776666779999999999999987754
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.34 E-value=1.1e+02 Score=28.99 Aligned_cols=40 Identities=18% Similarity=0.434 Sum_probs=30.1
Q ss_pred eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCH
Q 045071 314 SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQ 355 (453)
Q Consensus 314 ~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~ 355 (453)
....+++||..++. .......||++++..++|.++..+|.
T Consensus 182 ~~~p~iAvgs~e~a--~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 182 MHEPLIAVGSDEDA--PHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred ccCceEEEEcccCC--ccccceEEEEecCCcceeeeehhcCC
Confidence 45677777765532 23557899999998889999999874
No 155
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=22.20 E-value=7e+02 Score=23.86 Aligned_cols=67 Identities=12% Similarity=0.232 Sum_probs=34.2
Q ss_pred CCEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHH
Q 045071 282 PFSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQL 357 (453)
Q Consensus 282 ~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~ 357 (453)
...+-.+|+.+++-..+..-... ......+...+--+++.+.-+ ++++.|.+..... .-.-.||++.
T Consensus 93 Dk~~k~wDL~S~Q~~~v~~Hd~p-vkt~~wv~~~~~~cl~TGSWD------KTlKfWD~R~~~p--v~t~~LPeRv 159 (347)
T KOG0647|consen 93 DKQAKLWDLASGQVSQVAAHDAP-VKTCHWVPGMNYQCLVTGSWD------KTLKFWDTRSSNP--VATLQLPERV 159 (347)
T ss_pred CCceEEEEccCCCeeeeeecccc-eeEEEEecCCCcceeEecccc------cceeecccCCCCe--eeeeecccee
Confidence 36788999999988776332111 112223332222245555443 3678897653211 1223567644
No 156
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.16 E-value=3.1e+02 Score=25.95 Aligned_cols=30 Identities=3% Similarity=-0.038 Sum_probs=22.6
Q ss_pred eCCEEEEEEcCCCeEEEEECCC----CceEEcCC
Q 045071 375 HGEFIVIVIRGSDKALLFDLCM----KSWQWIPR 404 (453)
Q Consensus 375 ~g~~I~l~~~~~~~v~~Yd~~~----~~W~~l~~ 404 (453)
..+.||+..-..+.|.++|..+ +..+.+..
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~ 228 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ 228 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEE
Confidence 4778998877788999999987 45555543
No 157
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=21.73 E-value=4.2e+02 Score=25.44 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=18.4
Q ss_pred CCEEEEEEcCCCeEEEEECCCCceE
Q 045071 376 GEFIVIVIRGSDKALLFDLCMKSWQ 400 (453)
Q Consensus 376 g~~I~l~~~~~~~v~~Yd~~~~~W~ 400 (453)
.+.|.+-.-..++|-+||+.+.++.
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCcee
Confidence 4556665555789999999988763
No 158
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=21.41 E-value=7.2e+02 Score=23.73 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=50.3
Q ss_pred EEECCEEEEEecCCCEEEEEECCCCcEEEeecCCccccCCCceee-eCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCe
Q 045071 269 VQVNGKFYCMNYSPFSVLAYDISANAWFNIQAPMRRFLRSPSLLD-SNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLW 347 (453)
Q Consensus 269 v~~~G~lY~~~~~~~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~-~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W 347 (453)
.|.+..--+.+.....|..||+.+++=..+..- ......++ .-++=++|.+.-+ .+|++|.....
T Consensus 61 ~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth----~~~i~ci~~~~~~~~vIsgsWD------~~ik~wD~R~~---- 126 (323)
T KOG1036|consen 61 AFADESTIVTGGLDGQVRRYDLNTGNEDQIGTH----DEGIRCIEYSYEVGCVISGSWD------KTIKFWDPRNK---- 126 (323)
T ss_pred eccCCceEEEeccCceEEEEEecCCcceeeccC----CCceEEEEeeccCCeEEEcccC------ccEEEEecccc----
Confidence 444433223333347899999999876555221 11112222 2122223333322 36788854420
Q ss_pred EEEeecCHHHHHHhhcccCCCcEEEEe-eCCEEEEEEcCCCeEEEEECCCCc
Q 045071 348 AEIERMPQQLYAQFAEIEAGNGFDTIG-HGEFIVIVIRGSDKALLFDLCMKS 398 (453)
Q Consensus 348 ~~v~~mp~~~~~~~~~~~~~~~~~~~~-~g~~I~l~~~~~~~v~~Yd~~~~~ 398 (453)
..+..... ...+.|.. .||+|.+ +...+++++||+.+..
T Consensus 127 ~~~~~~d~-----------~kkVy~~~v~g~~LvV-g~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 127 VVVGTFDQ-----------GKKVYCMDVSGNRLVV-GTSDRKVLIYDLRNLD 166 (323)
T ss_pred cccccccc-----------CceEEEEeccCCEEEE-eecCceEEEEEccccc
Confidence 01111111 12344544 4565555 3446899999998653
No 159
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=20.63 E-value=2.9e+02 Score=21.89 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=24.5
Q ss_pred eEEEEcCccc-ceecCCCCCCCCCcceEEEEEcC--CceEEEEEcc
Q 045071 182 TLILCNPVTG-SLSQLPPTLRPRLFPSIGLKVTP--TAVDVTVAGD 224 (453)
Q Consensus 182 ~~~v~NP~T~-~w~~LP~~~~~r~~~~~~~~~~~--~~ykvv~~g~ 224 (453)
.++++||.|+ .|....+ . ...+.+..++ +.|+|+-+++
T Consensus 12 ~V~~yd~~tKk~WvPs~~--~---~~~V~~y~~~~~ntfRIi~~~~ 52 (111)
T cd01206 12 HVFQIDPKTKKNWIPASK--H---AVTVSYFYDSTRNVYRIISVGG 52 (111)
T ss_pred EEEEECCCCcceeEeCCC--C---ceeEEEEecCCCcEEEEEEecC
Confidence 6899999986 8975543 1 1234455554 5688887654
No 160
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=20.53 E-value=87 Score=29.13 Aligned_cols=41 Identities=12% Similarity=-0.006 Sum_probs=30.3
Q ss_pred cccccCCChHHHHHHHHhcCC-hhhhhhhhhccccccccccC
Q 045071 47 DSRIWSKLPQRLLDRVLAFLP-PPAFFRARAVCKRWYGLLFS 87 (453)
Q Consensus 47 ~~~~w~~LP~dll~~IL~rLp-~~~l~r~r~VCK~W~~~i~s 87 (453)
......+||.+++.+||.||| =.+|..++.|-..-..++.+
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 345678999999999999999 44888777765544444443
No 161
>PRK02889 tolB translocation protein TolB; Provisional
Probab=20.03 E-value=8.8e+02 Score=24.21 Aligned_cols=103 Identities=10% Similarity=0.120 Sum_probs=54.5
Q ss_pred CEEEEEECCCCcEEEeecCCccccCCCceeeeCCeEEEEEEEeccCCCCCCcEEEEEeecCCCCeEEEeecCHHHHHHhh
Q 045071 283 FSVLAYDISANAWFNIQAPMRRFLRSPSLLDSNGKLILVAAVEKSKLNVPKSLRLWSLQACGTLWAEIERMPQQLYAQFA 362 (453)
Q Consensus 283 ~~i~~yD~~~~~W~~i~~p~~~~~~~~~lv~~~g~L~vv~~~~~~~~~~~~~i~vw~ld~~~~~W~~v~~mp~~~~~~~~ 362 (453)
..|..+|..++..+.+... ......+. ..-+|+.+++..... ...+||.++..++..+.+..-..
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~-~~~~~~~~-wSpDG~~l~f~s~~~------g~~~Iy~~~~~~g~~~~lt~~g~------- 328 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQS-SGIDTEPF-FSPDGRSIYFTSDRG------GAPQIYRMPASGGAAQRVTFTGS------- 328 (427)
T ss_pred ceEEEEECCCCCcEECCCC-CCCCcCeE-EcCCCCEEEEEecCC------CCcEEEEEECCCCceEEEecCCC-------
Confidence 4688889887776554221 11111122 233566444432211 13489999876665555431110
Q ss_pred cccCCCcEEEEeeCCEEEEEEcC--CCeEEEEECCCCceEEcC
Q 045071 363 EIEAGNGFDTIGHGEFIVIVIRG--SDKALLFDLCMKSWQWIP 403 (453)
Q Consensus 363 ~~~~~~~~~~~~~g~~I~l~~~~--~~~v~~Yd~~~~~W~~l~ 403 (453)
..........|+.|++.... ...+.+||+.+++.+.+.
T Consensus 329 ---~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 329 ---YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred ---CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 00112233467777765443 246899999988777663
Done!