BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045072
(556 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 184/552 (33%), Positives = 287/552 (51%), Gaps = 37/552 (6%)
Query: 6 PCTANSSPLTPLGFLERAATVYG--DCPSIIYNNLIY--TWSQTHRRCLQLASSLSSIGI 61
P T L FLERAA ++G + S ++ ++ T+++ ++R +L L ++G+
Sbjct: 10 PSTMMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGV 69
Query: 62 TRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQS 121
G V+ + N EA+FA+P GA+L+ N RL + I+ +L H+E K++L D
Sbjct: 70 GVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNL 129
Query: 122 RNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKW 181
LV EAI ++K ++ D + + E+L + DP
Sbjct: 130 LPLV-EAIR---GELKTVQHFVVMD-----------EKAPEGYLAYEEALGEEADP---- 170
Query: 182 IR-PQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVD-SLIDW-SIPKQPVYLWTLPM 238
+R P+ M YT+GTT PKGVV+ HR + + ++ SL+D ++ ++ V L +PM
Sbjct: 171 VRVPERAACGMA--YTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPM 228
Query: 239 FHANGWSYPWGMAAVGGTNVCLR-KFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRS- 296
FH N W P+ VG V + D A + ++ GVT G P V +++ S
Sbjct: 229 FHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLEST 288
Query: 297 -EPLRNPVHILTAGAPPPAAVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPAT 355
L+ ++ G+ P +++ R E +G V GYGLTET+ +VV K+ L
Sbjct: 289 GHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 348
Query: 356 ERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRK 415
E+ +K++ G+ + + V D E G V DG +LGE+ +G + GY + TR
Sbjct: 349 EKLTLKAKTGL-PIPLVRLRVADEE-GRPVPKDGKALGEVQLKGPWITGGYYGNEEATRS 406
Query: 416 CMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVV 475
+ DG+F TGD+ V +GY+EIKDR KD+I SGGE +SSV++E+ L +P V EAAVV
Sbjct: 407 ALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVV 466
Query: 476 ARPDEFWGETPCAFLSLKAELEKKPTEKEIIEY-CRARLPRYMVPKTVVFKEELPKTSTG 534
A P W E P A + + E KPT +E+ E+ +A ++ +P VF EE+P+TS G
Sbjct: 467 AIPHPKWQERPLAVVVPRGE---KPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAG 523
Query: 535 KIKKFELREMAK 546
K K LRE K
Sbjct: 524 KFLKRALREQYK 535
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 223 bits (569), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 161/509 (31%), Positives = 243/509 (47%), Gaps = 42/509 (8%)
Query: 41 TWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDA 100
T++Q + + A L+++GI +G V+++ PN + GA+ INTRL A
Sbjct: 45 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 104
Query: 101 RTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTV 160
+S +L S SK+V+ S V++AI + P + D D+ + ++
Sbjct: 105 PEVSFILSDSGSKVVIYGAPSAP-VIDAIRA-----QADPPGTVTDWIGADSLAERLRSA 158
Query: 161 DSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDS 220
++ ++ GD N + + YTSGTT PKGVVH H +
Sbjct: 159 AAD----EPAVECGGDDN------------LFIMYTSGTTGHPKGVVHTHESVHSAASSW 202
Query: 221 LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHM 280
+ + L LPMFH + A G T + + +FDA ++ +I + V
Sbjct: 203 ASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIG 262
Query: 281 CGAPVVLNMISNLPRSEPLRNP--VHILTAGAPPPAAVLFRTESLGFLVSHGYGLTETAG 338
P +LN + +P L P + +T GAP P A++ + V GY LTE+ G
Sbjct: 263 GAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCG 322
Query: 339 LVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFR 398
L +E A K+ R FT++ + + G+ H GE+V +
Sbjct: 323 ----------GGTLLLSEDALRKAGSAGRATMFTDV-AVRGDDGVIREH---GEGEVVIK 368
Query: 399 GGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVE 458
++ Y P TR D+GWF TGD+G I +GYL IKDR KD+IISGGEN+ E
Sbjct: 369 SDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAE 427
Query: 459 VESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMV 518
+ESV+ P V+E AV+ PDE WGE A + + + +E++I+EYC RL RY +
Sbjct: 428 IESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVAD---QNEVSEQQIVEYCGTRLARYKL 484
Query: 519 PKTVVFKEELPKTSTGKIKKFELREMAKA 547
PK V+F E +P+ TGKI K LRE A
Sbjct: 485 PKKVIFAEAIPRNPTGKILKTVLREQYSA 513
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 152/526 (28%), Positives = 245/526 (46%), Gaps = 58/526 (11%)
Query: 36 NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNIN 95
N +YT++ ++AS L+ IGI +G V+ + P+ P A GAI+ N
Sbjct: 46 NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAAN 105
Query: 96 TRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFP--SDIKCPPLVLIADHTDHDND 153
++ + S +KL++ ++ E + F SD+K V+ D
Sbjct: 106 PFSTPAELAKHAKASRAKLLI----TQACYYEKVKDFARESDVK----VMCVDSAPDG-- 155
Query: 154 NKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDP---MILNYTSGTTSSPKGVVHCH 210
C + S +T+ D N PQ + P + L Y+SGTT PKGV+ H
Sbjct: 156 ------------CLHFSELTQADENEA---PQVDISPDDVVALPYSSGTTGLPKGVMLTH 200
Query: 211 RGIFVMTVDSLIDWSIPK-----QPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFD 264
+G+ + +V +D P + V L LPMFH S VG + + KF+
Sbjct: 201 KGL-ITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFE 259
Query: 265 AAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLR----NPVHILTAGAPPPAAVLFRT 320
+ +I ++ V+ APVV ++ ++ +S L + + ++ +G P L T
Sbjct: 260 IGSLLGLIEKYKVSI---APVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDT 316
Query: 321 ESLGF---LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVI 377
F + GYG+TE ++ C A E +K V E+ ++
Sbjct: 317 VRAKFPQARLGQGYGMTEAGPVLAMCLAF-------AKEPFDIKPGACGTVVRNAEMKIV 369
Query: 378 DSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYL 437
D E+G S+ + GEI RG +M GYL DP T + + +GW +TGD+G I D L
Sbjct: 370 DPETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDEL 427
Query: 438 EIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELE 497
I DR K++I G ++ E+E++L +P +++AAVV DE GE P AF+ +K+E +
Sbjct: 428 FIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFV-VKSE-K 485
Query: 498 KKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 543
+ TE EI +Y ++ Y K V F E +PK +GKI + L+E
Sbjct: 486 SQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 144/537 (26%), Positives = 233/537 (43%), Gaps = 70/537 (13%)
Query: 22 RAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAH 81
R A ++ D + + + + T R +LAS L G+ G V++++ N M E
Sbjct: 14 RNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73
Query: 82 FAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPL 141
A+ GAIL +N RL+A I+ +L +V+ R++V + PS
Sbjct: 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVA---GVLPSLGGVKKA 130
Query: 142 VLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTS 201
I D + K + D+ F P F D ++ +T+
Sbjct: 131 YAIGDGSGPFAPFKDLAS-DTPFSA----------PEF------GAADGFVIIHTAAVGG 173
Query: 202 SPKGVVHCHRGIFVMTVDSLID-WSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCL 260
P+G + +G ++ SL+D W + + V L LP+FH G + GG +V
Sbjct: 174 RPRGAL-ISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232
Query: 261 RKFDAAVIYKMIRQHGVTHMCG-APVVLNM--------ISNLPRSEPLRNPVHILTAGAP 311
KFD A + I H VT M AP++ N+ +++L L P I A
Sbjct: 233 AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTPETIERFEAT 292
Query: 312 PPAAVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCF 371
P A + T +G +ET+GL +++ + + R + +
Sbjct: 293 CPNATFWAT----------FGQSETSGLSTFAPYRD-------------RPKSAGRPLFW 329
Query: 372 TEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVI 431
+ V+D+E +GEIV RG ++ GY + T+ + +GW +TGD+G
Sbjct: 330 RTVAVVDAE---DRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRF 385
Query: 432 HADGYLEIKDRS--KDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAF 489
ADGYL R+ K++I +GGEN+ EVE L +PA+ +A V+ PD W E
Sbjct: 386 DADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSE----- 440
Query: 490 LSLKAELEKKPTEK----EIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 542
++KA KP E + E+ + + RY PK VVF E LPK + G I + ++
Sbjct: 441 -AIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVK 496
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 147/532 (27%), Positives = 248/532 (46%), Gaps = 45/532 (8%)
Query: 39 IYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRL 98
+YT+S H Q+A++ +G+ + VV ++ PN P + A F GA N
Sbjct: 88 VYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFF 147
Query: 99 DARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQ 158
I+ + S +KL++ + + V+ I +D + + +DN+S
Sbjct: 148 TPAEIAKQAKASNTKLIITEAR----YVDKIKPLQNDDGVVIVCI--------DDNESVP 195
Query: 159 TVDSNFCCTYESLVTKGDPNFKWIRPQNEWDP---MILNYTSGTTSSPKGVVHCHRGIFV 215
+ C + L T+ + E P + L Y+SGTT PKGV+ H+G+ V
Sbjct: 196 IPEG--CLRFTEL-TQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGL-V 251
Query: 216 MTVDSLIDWSIPK-----QPVYLWTLPMFHANGW-SYPWGMAAVGGTNVCLRKFDAAVIY 269
+V +D P V L LPMFH S VG + + KF+ ++
Sbjct: 252 TSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL 311
Query: 270 KMIRQHGVTHMCGAPVVLNMISNLPRSEPLR-NPVHILTAGAPPPAAVLFRTESLGF--- 325
++I++ VT P ++ I+ +E + + ++ +GA P L + F
Sbjct: 312 ELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNA 371
Query: 326 LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSV 385
+ GYG+TE AG V++ + P +KS V E+ ++D ++G S+
Sbjct: 372 KLGQGYGMTE-AGPVLAMSLGFAKEPFP------VKSGACGTVVRNAEMKIVDPDTGDSL 424
Query: 386 SHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKD 445
S + GEI RG +M GYL +P T + + DGW +TGD+G+I D L I DR K+
Sbjct: 425 SRNQP--GEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKE 482
Query: 446 VIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFL--SLKAELEKKPTEK 503
+I G ++ E+E++L +P + + AVVA +E GE P AF+ S +EL +E
Sbjct: 483 LIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSEL----SED 538
Query: 504 EIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR-EMAKAMGKSKVS 554
++ ++ ++ Y V F E +PK +GKI + +LR ++A +G S
Sbjct: 539 DVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGSGMAS 590
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 191/429 (44%), Gaps = 34/429 (7%)
Query: 120 QSRNLVVEAI-SLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTY----ESLVTK 174
Q R++ V+ I P +++ +V + D D ++ +D+ Y E++V K
Sbjct: 90 QMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPK 149
Query: 175 GDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLW 234
P+ N D + +TSGTT K V R + + + +L
Sbjct: 150 ESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLS 209
Query: 235 TLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLP 294
LP++H +G S G T + KF+A I MI+ +TH+ P LN +
Sbjct: 210 VLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQG 269
Query: 295 RSEPLRNPVHILTAGAPPPAAVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPA 354
EP N IL GA A ++ + + +G+TET ++ P
Sbjct: 270 LHEPY-NLQKILLGGAKLSATMIETALQYNLPIYNSFGMTETCSQFLTAT--------PE 320
Query: 355 TERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYL--KDPNG 412
AR + +I + E GE++ +G ++M GYL D G
Sbjct: 321 MLHARPDTVGMPSANVDVKIKNPNKEGH----------GELMIKGANVMNGYLYPTDLTG 370
Query: 413 TRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEA 472
T ++G+F TGD+ I +GY+ I DR KD+IISGGEN+ ++E+V P +++A
Sbjct: 371 TF----ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDA 426
Query: 473 AVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTS 532
V PD+ WG+ P + ++++ K ++I Y L +Y VPK + LP TS
Sbjct: 427 VCVGHPDDTWGQVPKLYFVSESDISK----AQLIAYLSKHLAKYKVPKHFEKVDTLPYTS 482
Query: 533 TGKIKKFEL 541
TGK+++ +L
Sbjct: 483 TGKLQRNKL 491
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 138 bits (347), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 147/589 (24%), Positives = 242/589 (41%), Gaps = 75/589 (12%)
Query: 1 MDELKPCTANSSPLTPLG------FLERAATVYGDCPSII-----YNNLIYTWSQTHRRC 49
M++ K +P PL L +A Y P I + + T+++
Sbjct: 6 MEDAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMS 65
Query: 50 LQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQH 109
++LA ++ G+ H + V + N + F G + N + R + +
Sbjct: 66 VRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNI 125
Query: 110 SESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYE 169
S+ +V V + ++ P K ++I D S+T F Y
Sbjct: 126 SQPTVVFVSKKGLQKILNVQKKLPIIQK----IIIMD----------SKTDYQGFQSMYT 171
Query: 170 SLVTKGDPNFKWIRPQNEWD------------PMILNYTSGTTSSPKGVVHCHRGI---F 214
+ + P F NE+D +I+N +SG+T PKGV HR + F
Sbjct: 172 FVTSHLPPGF------NEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVALPHRALAVRF 224
Query: 215 VMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQ 274
D + I L +P H G G G V + +F+ + + ++
Sbjct: 225 SHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQD 284
Query: 275 HGVTHMCGAPVVLNMI--SNLPRSEPLRNPVHILTAGAPPPA----AVLFRTESLGFLVS 328
+ + P + + + S L L N I + GAP AV R G +
Sbjct: 285 YKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IR 342
Query: 329 HGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHD 388
GYGLTET ++ T + K + V F E V+D ++G ++ +
Sbjct: 343 QGYGLTETTSAIL------------ITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 390
Query: 389 GASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVII 448
GE+ RG +M GY+ +P T + DGW ++GD+ D + I DR K +I
Sbjct: 391 --QRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIK 448
Query: 449 SGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEY 508
G ++ E+ES+L +P + +A V PD+ GE P A + L E K TEKEI++Y
Sbjct: 449 YKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL--EHGKTMTEKEIVDY 506
Query: 509 CRARLPR-YMVPKTVVFKEELPKTSTGKIKKFELREM---AKAMGKSKV 553
+++ + VVF +E+PK TGK+ ++RE+ AK GKSK+
Sbjct: 507 VASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 555
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 147/589 (24%), Positives = 239/589 (40%), Gaps = 75/589 (12%)
Query: 1 MDELKPCTANSSPLTPLG------FLERAATVYGDCPSII-----YNNLIYTWSQTHRRC 49
M++ K +P PL L +A Y P I + + T+++
Sbjct: 6 MEDAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMS 65
Query: 50 LQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQH 109
++LA ++ G+ H + V + N + F G + N + R + +
Sbjct: 66 VRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNI 125
Query: 110 SESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYE 169
S+ +V V + ++ P K ++I D S+T F Y
Sbjct: 126 SQPTVVFVSKKGLQKILNVQKKLPIIQK----IIIMD----------SKTDYQGFQSMYT 171
Query: 170 SLVTKGDPNFKWIRPQNEWD------------PMILNYTSGTTSSPKGVVHCHRGI---F 214
+ + P F NE+D +I+N +SG+T PKGV HR F
Sbjct: 172 FVTSHLPPGF------NEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVALPHRTACVRF 224
Query: 215 VMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQ 274
D + I L +P H G G G V + +F+ + + ++
Sbjct: 225 SHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQD 284
Query: 275 HGVTHMCGAPVVLNMI--SNLPRSEPLRNPVHILTAGAPPPA----AVLFRTESLGFLVS 328
+ + P + + S L L N I + GAP AV R G +
Sbjct: 285 YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IR 342
Query: 329 HGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHD 388
GYGLTET ++ T K + V F E V+D ++G ++ +
Sbjct: 343 QGYGLTETTSAIL------------ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 390
Query: 389 GASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVII 448
GE+ RG +M GY+ +P T + DGW ++GD+ D + I DR K +I
Sbjct: 391 --QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIK 448
Query: 449 SGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEY 508
G ++ E+ES+L +P + +A V PD+ GE P A + L E K TEKEI++Y
Sbjct: 449 YKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL--EHGKTMTEKEIVDY 506
Query: 509 CRARLPRYM-VPKTVVFKEELPKTSTGKIKKFELREM---AKAMGKSKV 553
+++ + VVF +E+PK TGK+ ++RE+ AK GKSK+
Sbjct: 507 VASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 555
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 147/589 (24%), Positives = 239/589 (40%), Gaps = 75/589 (12%)
Query: 1 MDELKPCTANSSPLTPLG------FLERAATVYGDCPSII-----YNNLIYTWSQTHRRC 49
M++ K +P PL L +A Y P I + + T+++
Sbjct: 1 MEDAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMS 60
Query: 50 LQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQH 109
++LA ++ G+ H + V + N + F G + N + R + +
Sbjct: 61 VRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNI 120
Query: 110 SESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYE 169
S+ +V V + ++ P K ++I D S+T F Y
Sbjct: 121 SQPTVVFVSKKGLQKILNVQKKLPIIQK----IIIMD----------SKTDYQGFQSMYT 166
Query: 170 SLVTKGDPNFKWIRPQNEWD------------PMILNYTSGTTSSPKGVVHCHRGI---F 214
+ + P F NE+D +I+N +SG+T PKGV HR F
Sbjct: 167 FVTSHLPPGF------NEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVALPHRTACVRF 219
Query: 215 VMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQ 274
D + I L +P H G G G V + +F+ + + ++
Sbjct: 220 SHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQD 279
Query: 275 HGVTHMCGAPVVLNMI--SNLPRSEPLRNPVHILTAGAPPPA----AVLFRTESLGFLVS 328
+ + P + + S L L N I + GAP AV R G +
Sbjct: 280 YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IR 337
Query: 329 HGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHD 388
GYGLTET ++ T K + V F E V+D ++G ++ +
Sbjct: 338 QGYGLTETTSAIL------------ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385
Query: 389 GASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVII 448
GE+ RG +M GY+ +P T + DGW ++GD+ D + I DR K +I
Sbjct: 386 --QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIK 443
Query: 449 SGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEY 508
G ++ E+ES+L +P + +A V PD+ GE P A + L E K TEKEI++Y
Sbjct: 444 YKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL--EHGKTMTEKEIVDY 501
Query: 509 CRARLPR-YMVPKTVVFKEELPKTSTGKIKKFELREM---AKAMGKSKV 553
+++ + VVF +E+PK TGK+ ++RE+ AK GKSK+
Sbjct: 502 VASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 550
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 147/589 (24%), Positives = 239/589 (40%), Gaps = 75/589 (12%)
Query: 1 MDELKPCTANSSPLTPLG------FLERAATVYGDCPSII-----YNNLIYTWSQTHRRC 49
M++ K +P PL L +A Y P I + + T+++
Sbjct: 1 MEDAKNIKKGPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMS 60
Query: 50 LQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQH 109
++LA ++ G+ H + V + N + F G + N + R + +
Sbjct: 61 VRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNI 120
Query: 110 SESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYE 169
S+ +V V + ++ P K ++I D S+T F Y
Sbjct: 121 SQPTVVFVSKKGLQKILNVQKKLPIIQK----IIIMD----------SKTDYQGFQSMYT 166
Query: 170 SLVTKGDPNFKWIRPQNEWD------------PMILNYTSGTTSSPKGVVHCHRGI---F 214
+ + P F NE+D +I+N +SG+T PKGV HR F
Sbjct: 167 FVTSHLPPGF------NEYDFVPESFDRDKTIALIMN-SSGSTGLPKGVALPHRTACVRF 219
Query: 215 VMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQ 274
D + I L +P H G G G V + +F+ + + ++
Sbjct: 220 SHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQD 279
Query: 275 HGVTHMCGAPVVLNMI--SNLPRSEPLRNPVHILTAGAPPPA----AVLFRTESLGFLVS 328
+ + P + + S L L N I + GAP AV R G +
Sbjct: 280 YKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG--IR 337
Query: 329 HGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHD 388
GYGLTET ++ T K + V F E V+D ++G ++ +
Sbjct: 338 QGYGLTETTSAIL------------ITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385
Query: 389 GASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVII 448
GE+ RG +M GY+ +P T + DGW ++GD+ D + I DR K +I
Sbjct: 386 --QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIK 443
Query: 449 SGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEY 508
G ++ E+ES+L +P + +A V PD+ GE P A + L E K TEKEI++Y
Sbjct: 444 YKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVL--EHGKTMTEKEIVDY 501
Query: 509 CRARLPR-YMVPKTVVFKEELPKTSTGKIKKFELREM---AKAMGKSKV 553
+++ + VVF +E+PK TGK+ ++RE+ AK GKSK+
Sbjct: 502 VASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSKL 550
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 133/542 (24%), Positives = 229/542 (42%), Gaps = 45/542 (8%)
Query: 19 FLERAATVYGDCPSIIYNNLI----YTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNI 74
++ER Y +I + N + Y++++ + L +L + G+ +++ + N
Sbjct: 32 YMER----YAKLGAIAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENC 87
Query: 75 PAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPS 134
+ A F G + N R + L S+ +V + S+ + + I++ +
Sbjct: 88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIV---FSSKKGLDKVITVQKT 144
Query: 135 DIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILN 194
+V++ D+ + N Y++ +FK + + ++
Sbjct: 145 VTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGYQA------SSFKTVEVDRKEQVALIM 198
Query: 195 YTSGTTSSPKGVVHCHRGI---FVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMA 251
+SG+T PKGV H I F D + + L +P H G G
Sbjct: 199 NSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL 258
Query: 252 AVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMI--SNLPRSEPLRNPVHILTAG 309
G V L KFD K ++ + T++ P + ++ S L L N V I + G
Sbjct: 259 ICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318
Query: 310 APPPA----AVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQG 365
AP AV R G V GYGLTET ++ T K
Sbjct: 319 APLSKEVGEAVARRFNLPG--VRQGYGLTETTSAII------------ITPEGDDKPGAS 364
Query: 366 VRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYT 425
+ V + VID ++ S+ + GE+ +G +M GY+ +P T++ + ++GW +T
Sbjct: 365 GKVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHT 422
Query: 426 GDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGET 485
GD+G + + I DR K +I G + E+ESVL +P++ +A V PD GE
Sbjct: 423 GDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGEL 482
Query: 486 PCAFLSLKAELEKKPTEKEIIEYCRARLPRYM-VPKTVVFKEELPKTSTGKIKKFELREM 544
P A + L E K TEKE+++Y +++ + V F +E+PK TGKI +RE+
Sbjct: 483 PGAVVVL--ESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREI 540
Query: 545 AK 546
K
Sbjct: 541 LK 542
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 132/542 (24%), Positives = 228/542 (42%), Gaps = 45/542 (8%)
Query: 19 FLERAATVYGDCPSIIYNNLI----YTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNI 74
++ER Y +I + N + Y++++ + L +L + G+ +++ + N
Sbjct: 32 YMER----YAKLGAIAFTNAVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENC 87
Query: 75 PAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPS 134
+ A F G + N R + L S+ +V + S+ + + I++ +
Sbjct: 88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIV---FSSKKGLDKVITVQKT 144
Query: 135 DIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILN 194
+V++ D+ + N +++ +FK + + ++
Sbjct: 145 VTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQA------SSFKTVEVDRKEQVALIM 198
Query: 195 YTSGTTSSPKGVVHCHRGI---FVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMA 251
+SG+T PKGV H I F D + + L +P H G G
Sbjct: 199 NSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL 258
Query: 252 AVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMI--SNLPRSEPLRNPVHILTAG 309
G V L KFD K ++ + T + P + ++ S L L N V I + G
Sbjct: 259 ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318
Query: 310 APPPA----AVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQG 365
AP AV R G V GYGLTET ++ T K
Sbjct: 319 APLSKEVGEAVARRFNLPG--VRQGYGLTETTSAII------------ITPEGDDKPGAS 364
Query: 366 VRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYT 425
+ V + VID ++ S+ + GE+ +G +M GY+ +P T++ + ++GW +T
Sbjct: 365 GKVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHT 422
Query: 426 GDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGET 485
GD+G + + I DR K +I G + E+ESVL +P++ +A V PD GE
Sbjct: 423 GDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGEL 482
Query: 486 PCAFLSLKAELEKKPTEKEIIEYCRARLPRYM-VPKTVVFKEELPKTSTGKIKKFELREM 544
P A + L E K TEKE+++Y +++ + V F +E+PK TGKI +RE+
Sbjct: 483 PGAVVVL--ESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREI 540
Query: 545 AK 546
K
Sbjct: 541 LK 542
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 132/542 (24%), Positives = 228/542 (42%), Gaps = 45/542 (8%)
Query: 19 FLERAATVYGDCPSIIYNNLI----YTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNI 74
++ER Y +I + N + Y++++ + L +L + G+ +++ + N
Sbjct: 32 YMER----YAKLGAIAFTNAVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENC 87
Query: 75 PAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPS 134
+ A F G + N R + L S+ +V + S+ + + I++ +
Sbjct: 88 EEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIV---FSSKKGLDKVITVQKT 144
Query: 135 DIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILN 194
+V++ D+ + N +++ +FK + + ++
Sbjct: 145 VTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQA------SSFKTVEVDRKEQVALIM 198
Query: 195 YTSGTTSSPKGVVHCHRGI---FVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMA 251
+SG+T PKGV H I F D + + L +P H G G
Sbjct: 199 NSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYL 258
Query: 252 AVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMI--SNLPRSEPLRNPVHILTAG 309
G V L KFD K ++ + T + P + ++ S L L N V I + G
Sbjct: 259 ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGG 318
Query: 310 APPPA----AVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQG 365
AP AV R G V GYGLTET ++ T K
Sbjct: 319 APLSKEVGEAVARRFNLPG--VRQGYGLTETTSAII------------ITPEGDDKPGAS 364
Query: 366 VRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYT 425
+ V + VID ++ S+ + GE+ +G +M GY+ +P T++ + ++GW +T
Sbjct: 365 GKVVPLFKAKVIDLDTKKSLGPN--RRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHT 422
Query: 426 GDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGET 485
GD+G + + I DR K +I G + E+ESVL +P++ +A V PD GE
Sbjct: 423 GDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGEL 482
Query: 486 PCAFLSLKAELEKKPTEKEIIEYCRARLPRYM-VPKTVVFKEELPKTSTGKIKKFELREM 544
P A + L E K TEKE+++Y +++ + V F +E+PK TGKI +RE+
Sbjct: 483 PGAVVVL--ESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREI 540
Query: 545 AK 546
K
Sbjct: 541 LK 542
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 139/559 (24%), Positives = 234/559 (41%), Gaps = 61/559 (10%)
Query: 20 LERAATVYGDCPSII-----YNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNI 74
L +A Y P I + + T+S+ +LA ++ G+ H ++V + N
Sbjct: 60 LHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSEN- 118
Query: 75 PAMYEAHFAIPFTGAILNNI-----NTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAI 129
F +P GA+ + N + R + L S+ +V ++ ++
Sbjct: 119 ----SLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGVQ 174
Query: 130 SLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWD 189
P K +V++ D D Q++ S ES + G + +I + +
Sbjct: 175 KKLPIIQK---IVIL----DSREDYMGKQSMYSFI----ESHLPAGFNEYDYIPDSFDRE 223
Query: 190 ---PMILNYTSGTTSSPKGVVHCHRGI---FVMTVDSLIDWSIPKQPVYLWTLPMFHANG 243
+I+N +SG+T PKGV H+ I F D + I L +P H G
Sbjct: 224 TATALIMN-SSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFG 282
Query: 244 WSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMI--SNLPRSEPLRN 301
G G V + +F+ + + ++ + + P + + S L L N
Sbjct: 283 MFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLSN 342
Query: 302 PVHILTAGAPPPA----AVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATER 357
I + GAP AV R + G + GYGLTET ++ T R
Sbjct: 343 LHEIASGGAPLAKEVGEAVAKRFKLPG--IRQGYGLTETTSAII------------ITPR 388
Query: 358 ARMKSRQGV--RTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRK 415
R + G + V F ++D ++G ++ + GE+ +G +M GY+ +P T
Sbjct: 389 GR-DDKPGACGKVVPFFSAKIVDLDTGKTLGVN--QRGELCVKGPMIMKGYVNNPEATSA 445
Query: 416 CMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVV 475
+ DGW ++GD+ DGY I DR K +I G + E+ES+L +P + +A V
Sbjct: 446 LIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVA 505
Query: 476 ARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARL-PRYMVPKTVVFKEELPKTSTG 534
PD GE P A + L E K TE+E+++Y ++ + V F +E+PK TG
Sbjct: 506 GIPDPDAGELPAAVVVL--EEGKTMTEQEVMDYVAGQVTASKRLRGGVKFVDEVPKGLTG 563
Query: 535 KIKKFELREMAKAMGKSKV 553
KI ++RE+ KSK+
Sbjct: 564 KIDARKIREILMMGKKSKL 582
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 142/514 (27%), Positives = 221/514 (42%), Gaps = 60/514 (11%)
Query: 51 QLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHS 110
+LAS +S G+ +G V V PN +A+ A IN + + +L S
Sbjct: 64 KLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDS 123
Query: 111 ESKLVLVD---YQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCT 167
E+ ++V Y++ V+E + + ++ N S+ DS
Sbjct: 124 EATTLVVHSXLYENFKPVLEKTGV-------ERVFVVGGEV-----NSLSEVXDS----- 166
Query: 168 YESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIP 227
G +F+ ++ E D ++ YT GTT PKGV H + + + +
Sbjct: 167 -------GSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLS 219
Query: 228 KQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVL 287
+ P FH+ + VG V F+ + + I ++ T P L
Sbjct: 220 HXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPAL 279
Query: 288 NMISNLPRSEPLR---NPVHILTAGAPPPAAVLFRTESLGFLVSHG-----------YGL 333
N++ N S + + + GA P A L E L L + +G
Sbjct: 280 NVLVNTLESSNKTYDWSYLKVFATGAWPVAPAL--VEKLLKLAAEKCNNPRLRHNQIWGX 337
Query: 334 TETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLG 393
TE V + N RL + + QGV E+ VI E G + G S G
Sbjct: 338 TEACPXVTT----NPPLRLDKS------TTQGV-PXSDIELKVISLEDGRELGV-GES-G 384
Query: 394 EIVFRGGSMMLGYLKDPNGTRKC----MKDDGWFYTGDVGVIHADGYLEIKDRSKDVIIS 449
EIV RG ++ GY K ++C K +F TGDVG I +G+L +DR K+VI
Sbjct: 385 EIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY 444
Query: 450 GGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYC 509
G ++ E+E++L + AV + AV+ +PDE GE P AF+ LK E K E++IIE+
Sbjct: 445 KGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWV 504
Query: 510 RARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 543
R R+ Y + V F EELP+T++GK+ + LRE
Sbjct: 505 RERISGYKRVREVEFVEELPRTASGKLLRRLLRE 538
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/403 (27%), Positives = 176/403 (43%), Gaps = 39/403 (9%)
Query: 41 TWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDA 100
T++Q + + A L+++GI +G V+++ PN + GA+ INTRL A
Sbjct: 31 TYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAA 90
Query: 101 RTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTV 160
+S +L S SK+V+ S V++AI + P + D D+ + ++
Sbjct: 91 PEVSFILSDSGSKVVIYGAPSAP-VIDAIR-----AQADPPGTVTDWIGADSLAERLRSA 144
Query: 161 DSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDS 220
++ ++ GD N + + YTSGTT PKGVVH H +
Sbjct: 145 AAD----EPAVECGGDDN------------LFIMYTSGTTGHPKGVVHTHESVHSAASSW 188
Query: 221 LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHM 280
+ + L LPMFH + A G T + + +FDA ++ +I + V
Sbjct: 189 ASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIG 248
Query: 281 CGAPVVLNMISNLPRSEPLRNP--VHILTAGAPPPAAVLFRTESLGFLVSHGYGLTETAG 338
P +LN + +P L P + +T GAP P A++ + V GY LTE+ G
Sbjct: 249 GAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIEVVQGYALTESCG 308
Query: 339 LVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFR 398
L +E A K+ R FT++ + + G+ H GE+V +
Sbjct: 309 ----------GGTLLLSEDALRKAGSAGRATMFTDV-AVRGDDGVIREH---GEGEVVIK 354
Query: 399 GGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKD 441
++ Y P TR D+GWF TGD+G I +GYL IKD
Sbjct: 355 SDILLKEYWNRPEATRDAF-DNGWFRTGDIGEIDDEGYLYIKD 396
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/363 (28%), Positives = 168/363 (46%), Gaps = 28/363 (7%)
Query: 195 YTSGTTSSPKGVVHCHRGIFVMTVDSLID-WSIPKQPVYLWTLPMFHANGWSYPWGMAAV 253
YTSGTT KG H + ++ +L+D W V + LP++H +G +
Sbjct: 162 YTSGTTGRSKGAXLSHDNLASNSL-TLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220
Query: 254 G-GTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR-SEPLRNPVHILTAGAP 311
G+ + L KFD I + + T + G P + PR ++ + +G+
Sbjct: 221 ARGSXIFLPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQSPRLTKETTGHXRLFISGSA 278
Query: 312 PPAAVLFR--TESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTV 369
P A R + G V YG TET + + +R+P A + GV
Sbjct: 279 PLLADTHREWSAKTGHAVLERYGXTETN---XNTSNPYDGDRVPG---AVGPALPGVSA- 331
Query: 370 CFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVG 429
V D E+G + +G I +G ++ GY + P T+ +DDG+F TGD+G
Sbjct: 332 -----RVTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLG 384
Query: 430 VIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAF 489
I GY+ I R KD++I+GG N+ E+ES + P V E+AV+ P +GE A
Sbjct: 385 KIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFGEGVTAV 444
Query: 490 LSLKAELEKKPT--EKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKA 547
+ +K T E +++ +L ++ PK V+F ++LP+ + GK++K LRE K
Sbjct: 445 VV----RDKGATIDEAQVLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNVLRETYKD 500
Query: 548 MGK 550
+ K
Sbjct: 501 IYK 503
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/367 (29%), Positives = 171/367 (46%), Gaps = 28/367 (7%)
Query: 186 NEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLID-WSIPKQPVYLWTLPMFHANGW 244
++ DP ++ YTSGTT PKG V R + T+D+L D W + V + LP+FH +G
Sbjct: 153 DDGDPALVVYTSGTTGPPKGAVIPRRAL-ATTLDALADAWQWTGEDVLVQGLPLFHVHGL 211
Query: 245 SYP-WGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEP----- 298
G GG+ L +F + + G T + G P + + I+ ++P
Sbjct: 212 VLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKA 270
Query: 299 LRNPVHILTAGAPPPAAVLFR-TESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATER 357
L +++ A P R + G V YG+TET + + R
Sbjct: 271 LAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETL--------------MNTSVR 316
Query: 358 ARMKSRQGVRTVCF--TEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRK 415
A + R G V E+ +++ + + DG S+GEI RG ++ YL P+ T
Sbjct: 317 ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAA 376
Query: 416 CMKDDGWFYTGDVGVIHADGYLEIKDR-SKDVIISGGENLSSVEVESVLYTNPAVNEAAV 474
+DG+F TGD+ V DGY+ I R + D+I SGG + + E+E+ L +P V EAAV
Sbjct: 377 AFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAV 436
Query: 475 VARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTG 534
PD GE A++ + A+ P + ++ ARL + P+ V + + +P+ G
Sbjct: 437 TGEPDPDLGERIVAWI-VPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMG 495
Query: 535 KIKKFEL 541
KI K L
Sbjct: 496 KIMKRAL 502
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/354 (27%), Positives = 163/354 (46%), Gaps = 24/354 (6%)
Query: 195 YTSGTTSSPKGVVHCHRGIFVMTVDSLID-WSIPKQPVYLWTLPMFHANGWSYPWGMAAV 253
YTSGTT G + H + ++ +L+D W V + LP++H +G +
Sbjct: 162 YTSGTTGRSXGAMLSHDNLASNSL-TLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220
Query: 254 G-GTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR-SEPLRNPVHILTAGAP 311
G+ + L FD I ++ + T + G P + PR + + + +G+
Sbjct: 221 ARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSA 278
Query: 312 PPAAVLFR--TESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTV 369
P A R + G V YG+TET ++ + +R+P A + GV
Sbjct: 279 PLLADTHREWSAXTGHAVLERYGMTETN---MNTSNPYDGDRVPG---AVGPALPGVSA- 331
Query: 370 CFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVG 429
V D E+G + +G I G ++ GY + P T +DDG+F TGD+G
Sbjct: 332 -----RVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384
Query: 430 VIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAF 489
I GY+ I R D++I+GG N+ E+ES + P V E+AV+ P +GE AF
Sbjct: 385 XIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAF 444
Query: 490 LSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 543
+ L E P+E +++ +L + +P V+F ++LP+ + G ++ LRE
Sbjct: 445 VVLXREF--APSEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 145/544 (26%), Positives = 231/544 (42%), Gaps = 73/544 (13%)
Query: 19 FLERAATVYGD-CP-SIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPA 76
L RAAT D C ++ L T ++ R +A+ L + G+ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEAHFAIPFTGAILNNINTRLDARTISVLLQHSE--SKLVLVDYQSRNLVVEAISLFPS 134
+ A A+ GA+ +N RL + ++ L++ E + ++ V Q V +AI S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----VADAIFQSGS 122
Query: 135 DIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKW----IRPQNE-WD 189
+ ++ + D LV G+P + + PQ E
Sbjct: 123 GAR---IIFLGD------------------------LVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMILNYTSGTTSSPKGVVHCHRGI--FVMTVDSLIDWSIPKQPVYLWTLPMFHANGW-SY 246
P + YTSGTT PK + R V+ + + + + V L +P++H G+ +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 247 PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNP 302
A+ GT V + +F ++++Q VT + P L+ ++ S L +
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 303 VHILTAGAPPPAAVLFRT-ESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMK 361
H+ AGA P AVL + L +GYG TE A + + R P T
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTE--------AMNSLYMRQPKTGTEMAP 326
Query: 362 SRQGVRTVCFTEIDVIDSESGLSVSHDGASLGE-IVFRGGSMMLGYLKDPNGTRKCMKDD 420
F+E+ ++ G+ GE IV S +GYL P T + ++D
Sbjct: 327 G-------FFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD- 378
Query: 421 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDE 480
GW+ T DV V +G + I R D+IISGGEN+ E+E VL T P V E V+ D+
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 481 FWGE--TPCAFLSLKAELEKKPTEKEIIEYCR-ARLPRYMVPKTVVFKEELPKTSTGKIK 537
WG+ T C L L + +CR + L + PK ++LPK + K+
Sbjct: 439 RWGQSVTACVVPRLGETLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVL 494
Query: 538 KFEL 541
+ +L
Sbjct: 495 RRQL 498
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 134/538 (24%), Positives = 232/538 (43%), Gaps = 60/538 (11%)
Query: 36 NNLIYTWSQTHRRCLQLASSLS-SIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNI 94
L++ + + Q A+ LS + G+ RG V+VV P +P + G I
Sbjct: 70 KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPG 129
Query: 95 NTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDN 154
++ + I LQ S++K ++ + + V++ + S+ CP L + ++ D
Sbjct: 130 TIQMKSTDILYRLQMSKAKAIV----AGDEVIQEVDTVASE--CPSLRIKLLVSEKSCDG 183
Query: 155 KSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGI- 213
+ N T V G + + +TSGT+ PK H + +
Sbjct: 184 WLNFKKLLNEASTTHHCVETGSQ-----------EASAIYFTSGTSGLPKMAEHSYSSLG 232
Query: 214 FVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSY--------PWGMAAVGGTNVCLRKFDA 265
+D+ W+ + +WT+ GW PW + A ++ L KFD
Sbjct: 233 LKAKMDA--GWTGLQASDIMWTI---SDTGWILNILCSLMEPWALGACTFVHL-LPKFDP 286
Query: 266 AVIYKMIRQHGVTHMCGAPVVLNMISNLPRSE----PLRNPVHILTAGAPPPAAVLFRTE 321
VI K + + + M GAP+V M+ S L+N V + P +R +
Sbjct: 287 LVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTV-GESLLPETLENWRAQ 345
Query: 322 SLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMK-SRQGVRTVCFTEIDVIDSE 380
+ G + YG TET ++C ++ ++K G C+ ++ +ID +
Sbjct: 346 T-GLDIRESYGQTETG---LTCM---------VSKTMKIKPGYMGTAASCY-DVQIIDDK 391
Query: 381 SGLSVSHDGASLGEIV--FRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLE 438
+ +G V R + GY+ +P+ T ++ D W GD G+ DGY +
Sbjct: 392 GNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQ 450
Query: 439 IKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAE-LE 497
R+ D+I S G + EVE+ L +PAV E AV++ PD GE AF+ L ++ L
Sbjct: 451 FMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS 510
Query: 498 KKPTE--KEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA-KAMGKSK 552
P + KE+ ++ ++ Y P+ + F LPKT TGKI++ +LR+ K GK++
Sbjct: 511 HDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGKAR 568
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 134/538 (24%), Positives = 232/538 (43%), Gaps = 60/538 (11%)
Query: 36 NNLIYTWSQTHRRCLQLASSLS-SIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNI 94
L++ + + Q A+ LS + G+ RG V+VV P +P + G I
Sbjct: 70 KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPG 129
Query: 95 NTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDN 154
++ + I LQ S++K ++ + + V++ + S+ CP L + ++ D
Sbjct: 130 TIQMKSTDILYRLQMSKAKAIV----AGDEVIQEVDTVASE--CPSLRIKLLVSEKSCDG 183
Query: 155 KSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGI- 213
+ N T V G + + +TSGT+ PK H + +
Sbjct: 184 WLNFKKLLNEASTTHHCVETGSQ-----------EASAIYFTSGTSGLPKMAEHSYSSLG 232
Query: 214 FVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSY--------PWGMAAVGGTNVCLRKFDA 265
+D+ W+ + +WT+ GW PW + A ++ L KFD
Sbjct: 233 LKAKMDA--GWTGLQASDIMWTI---SDTGWILNILCSLMEPWALGACTFVHL-LPKFDP 286
Query: 266 AVIYKMIRQHGVTHMCGAPVVLNMISNLPRSE----PLRNPVHILTAGAPPPAAVLFRTE 321
VI K + + + M GAP+V M+ S L+N V + P +R +
Sbjct: 287 LVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTV-GESLLPETLENWRAQ 345
Query: 322 SLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMK-SRQGVRTVCFTEIDVIDSE 380
+ G + YG TET ++C ++ ++K G C+ ++ +ID +
Sbjct: 346 T-GLDIRESYGQTETG---LTCM---------VSKTMKIKPGYMGTAASCY-DVQIIDDK 391
Query: 381 SGLSVSHDGASLGEIV--FRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLE 438
+ +G V R + GY+ +P+ T ++ D W GD G+ DGY +
Sbjct: 392 GNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLL-GDRGIKDEDGYFQ 450
Query: 439 IKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAE-LE 497
R+ D+I S G + EVE+ L +PAV E AV++ PD GE AF+ L ++ L
Sbjct: 451 FMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLS 510
Query: 498 KKPTE--KEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA-KAMGKSK 552
P + KE+ ++ ++ Y P+ + F LPKT TGKI++ +LR+ K GK++
Sbjct: 511 HDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKMSGKAR 568
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/357 (28%), Positives = 164/357 (45%), Gaps = 27/357 (7%)
Query: 195 YTSGTTSSPKGVVHCHRGIFVMTVDSLID-WSIPKQPVYLWTLPMFHANGWSYPWGMAAV 253
YTSGTT G + H + ++ +L+D W V + LP++H +G +
Sbjct: 162 YTSGTTGRSXGAMLSHDNLASNSL-TLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220
Query: 254 G-GTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR-SEPLRNPVHILTAGAP 311
G+ + L FD I ++ + T + G P + PR + + + +G+
Sbjct: 221 ARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSA 278
Query: 312 PPAAVLFR--TESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTV 369
P A R + G V YG+TET ++ + +R+P A + GV
Sbjct: 279 PLLADTHREWSAXTGHAVLERYGMTETN---MNTSNPYDGDRVPG---AVGPALPGVSA- 331
Query: 370 CFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVG 429
V D E+G + +G I G ++ GY + P T +DDG+F TGD+G
Sbjct: 332 -----RVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384
Query: 430 VIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAF 489
I GY+ I R D++I+GG N+ E+ES + P V E+AV+ P +GE AF
Sbjct: 385 XIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAF 444
Query: 490 LSLKAELEKKPTE---KEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 543
+ L E P+E +E+ + RL + +P V+F ++LP+ + G ++ LRE
Sbjct: 445 VVLXREF--APSEILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 499
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 142/547 (25%), Positives = 224/547 (40%), Gaps = 71/547 (12%)
Query: 19 FLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMY 78
L A YGD +I N +++ + R +LA+ +GI + V V PNI +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 79 EAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLV-------DYQSRNLVVEAISL 131
E FA+ GA+ + I+ + +E+ ++ DY+S V++
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS--- 146
Query: 132 FPSDIKCPPL--VLIADHTDHDNDNKSSQTVDSNFCCTYESLVTK--GDPNFKWIRPQNE 187
K P L +++A + E L T+ P K
Sbjct: 147 -----KLPTLKNIIVAGEAEE--------------FLPLEDLHTEPVKLPEVK------S 181
Query: 188 WDPMILNYTSGTTSSPKGVVHCHRG-IFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSY 246
D L + G+T K + H I+ + + W + VYL LPM H S
Sbjct: 182 SDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHSTVYLAALPMAHNYPLSS 240
Query: 247 P--WGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAP--VVLNMISNLPRSEPLRNP 302
P G+ GG V + +I + VT P ++ M + R + L +
Sbjct: 241 PGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSL 300
Query: 303 VHILTAGAPPPAAVLFRTES-LGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMK 361
+ GA A R ++ G + +G+ E GLV + RL E +
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAE--GLV-------NYTRLDDPEEIIVN 351
Query: 362 SRQGVRTVCFTEIDVIDSESGLSVSHDG----ASLGEIVFRGGSMMLGYLKDPNGTRKCM 417
+ QG + E V D HD G ++ RG + GY K
Sbjct: 352 T-QGKPMSPYDESRVWDD-------HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 418 KDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVAR 477
+DG++ TGD+ + DGY+ ++ R+KD I GGE +++ EVE+ L +PAV++AA+V+
Sbjct: 404 TEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSM 463
Query: 478 PDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRAR-LPRYMVPKTVVFKEELPKTSTGKI 536
PD+F GE C F+ + E P E+ + R R L Y +P V F E P+T GK+
Sbjct: 464 PDQFLGERSCVFIIPRDE---APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKV 520
Query: 537 KKFELRE 543
K LRE
Sbjct: 521 SKKALRE 527
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 144/544 (26%), Positives = 230/544 (42%), Gaps = 73/544 (13%)
Query: 19 FLERAATVYGD-CP-SIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPA 76
L RAAT D C ++ L T ++ R +A+ L + G+ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEAHFAIPFTGAILNNINTRLDARTISVLLQHSE--SKLVLVDYQSRNLVVEAISLFPS 134
+ A A+ GA+ +N RL + ++ L++ E + ++ V Q V +AI S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----VADAIFQSGS 122
Query: 135 DIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKW----IRPQNE-WD 189
+ ++ + D LV G+P + + PQ E
Sbjct: 123 GAR---IIFLGD------------------------LVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMILNYTSGTTSSPKGVVHCHRGI--FVMTVDSLIDWSIPKQPVYLWTLPMFHANGW-SY 246
P + YTSGTT PK + R V+ + + + + V L +P++H G+ +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 247 PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNP 302
A+ GT V + +F ++++Q VT + P L+ ++ S L +
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 303 VHILTAGAPPPAAVLFRT-ESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMK 361
H+ AGA P AVL + L + YG TE A + + R P T
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTE--------AMNSLYMRQPKTGTEMAP 326
Query: 362 SRQGVRTVCFTEIDVIDSESGLSVSHDGASLGE-IVFRGGSMMLGYLKDPNGTRKCMKDD 420
F+E+ ++ G+ GE IV S +GYL P T + ++D
Sbjct: 327 G-------FFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD- 378
Query: 421 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDE 480
GW+ T DV V +G + I R D+IISGGEN+ E+E VL T P V E V+ D+
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 481 FWGE--TPCAFLSLKAELEKKPTEKEIIEYCR-ARLPRYMVPKTVVFKEELPKTSTGKIK 537
WG+ T C L L + +CR + L + PK ++LPK + K+
Sbjct: 439 RWGQSVTACVVPRLGETLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVL 494
Query: 538 KFEL 541
+ +L
Sbjct: 495 RRQL 498
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 144/544 (26%), Positives = 230/544 (42%), Gaps = 73/544 (13%)
Query: 19 FLERAATVYGD-CP-SIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPA 76
L RAAT D C ++ L T ++ R +A+ L + G+ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEAHFAIPFTGAILNNINTRLDARTISVLLQHSE--SKLVLVDYQSRNLVVEAISLFPS 134
+ A A+ GA+ +N RL + ++ L++ E + ++ V Q V +AI S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----VADAIFQSGS 122
Query: 135 DIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKW----IRPQNE-WD 189
+ ++ + D LV G+P + + PQ E
Sbjct: 123 GAR---IIFLGD------------------------LVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMILNYTSGTTSSPKGVVHCHRGI--FVMTVDSLIDWSIPKQPVYLWTLPMFHANGW-SY 246
P + YTSGTT PK + R V+ + + + + V L +P++H G+ +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 247 PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNP 302
A+ GT V + +F ++++Q VT + P L+ ++ S L +
Sbjct: 215 LVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 303 VHILTAGAPPPAAVLFRT-ESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMK 361
H+ AGA P AVL + L + YG TE A + + R P T
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE--------AMNSLYMRQPKTGTEMAP 326
Query: 362 SRQGVRTVCFTEIDVIDSESGLSVSHDGASLGE-IVFRGGSMMLGYLKDPNGTRKCMKDD 420
F+E+ ++ G+ GE IV S +GYL P T + ++D
Sbjct: 327 G-------FFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEATAEKLQD- 378
Query: 421 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDE 480
GW+ T DV V +G + I R D+IISGGEN+ E+E VL T P V E V+ D+
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 481 FWGE--TPCAFLSLKAELEKKPTEKEIIEYCR-ARLPRYMVPKTVVFKEELPKTSTGKIK 537
WG+ T C L L + +CR + L + PK ++LPK + K+
Sbjct: 439 RWGQSVTACVVPRLGETLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVL 494
Query: 538 KFEL 541
+ +L
Sbjct: 495 RRQL 498
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 144/544 (26%), Positives = 230/544 (42%), Gaps = 73/544 (13%)
Query: 19 FLERAATVYGD-CP-SIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPA 76
L RAAT D C ++ L T ++ R +A+ L + G+ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEAHFAIPFTGAILNNINTRLDARTISVLLQHSE--SKLVLVDYQSRNLVVEAISLFPS 134
+ A A+ GA+ +N RL + ++ L++ E + ++ V Q V +AI S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----VADAIFQSGS 122
Query: 135 DIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKW----IRPQNE-WD 189
+ ++ + D LV G+P + + PQ E
Sbjct: 123 GAR---IIFLGD------------------------LVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMILNYTSGTTSSPKGVVHCHRGI--FVMTVDSLIDWSIPKQPVYLWTLPMFHANGW-SY 246
P + YTSGTT PK + R V+ + + + + V L +P++H G+ +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 247 PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNP 302
A+ GT V + +F ++++Q VT + P L+ ++ S L +
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 303 VHILTAGAPPPAAVLFRT-ESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMK 361
H+ AGA P AVL + L + YG TE A + + R P T
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE--------AMNSLYMRQPKTGTEMAP 326
Query: 362 SRQGVRTVCFTEIDVIDSESGLSVSHDGASLGE-IVFRGGSMMLGYLKDPNGTRKCMKDD 420
F+E+ ++ G+ GE IV S +GYL P T + ++D
Sbjct: 327 G-------FFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD- 378
Query: 421 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDE 480
GW+ T DV V +G + I R D+IISGGEN+ E+E VL T P V E V+ D+
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 481 FWGE--TPCAFLSLKAELEKKPTEKEIIEYCR-ARLPRYMVPKTVVFKEELPKTSTGKIK 537
WG+ T C L L + +CR + L + PK ++LPK + K+
Sbjct: 439 RWGQSVTACVVPRLGETLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVL 494
Query: 538 KFEL 541
+ +L
Sbjct: 495 RRQL 498
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 144/544 (26%), Positives = 230/544 (42%), Gaps = 73/544 (13%)
Query: 19 FLERAATVYGD-CP-SIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPA 76
L RAAT D C ++ L T ++ R +A+ L + G+ V+VVAPN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 77 MYEAHFAIPFTGAILNNINTRLDARTISVLLQHSE--SKLVLVDYQSRNLVVEAISLFPS 134
+ A A+ GA+ +N RL + ++ L++ E + ++ V Q V +AI S
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQ----VADAIFQSGS 122
Query: 135 DIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKW----IRPQNE-WD 189
+ ++ + D LV G+P + + PQ E
Sbjct: 123 GAR---IIFLGD------------------------LVRDGEP-YSYGPPIEDPQREPAQ 154
Query: 190 PMILNYTSGTTSSPKGVVHCHRGI--FVMTVDSLIDWSIPKQPVYLWTLPMFHANGW-SY 246
P + YTSGTT PK + R V+ + + + + V L +P++H G+ +
Sbjct: 155 PAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAV 214
Query: 247 PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNP 302
A+ GT V + +F ++++Q VT + P L+ ++ S L +
Sbjct: 215 LVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSL 274
Query: 303 VHILTAGAPPPAAVLFRT-ESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMK 361
H+ AGA P AVL + L + YG TE A + + R P T
Sbjct: 275 RHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE--------AMNSLYMRQPKTGTEMAP 326
Query: 362 SRQGVRTVCFTEIDVIDSESGLSVSHDGASLGE-IVFRGGSMMLGYLKDPNGTRKCMKDD 420
F+E+ ++ G+ GE IV S +GYL P T + ++D
Sbjct: 327 G-------FFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD- 378
Query: 421 GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDE 480
GW+ T DV V +G + I R D+IISGGEN+ E+E VL T P V E V+ D+
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 481 FWGE--TPCAFLSLKAELEKKPTEKEIIEYCR-ARLPRYMVPKTVVFKEELPKTSTGKIK 537
WG+ T C L L + +CR + L + PK ++LPK + K+
Sbjct: 439 RWGQSVTACVVPRLGETLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVL 494
Query: 538 KFEL 541
+ +L
Sbjct: 495 RRQL 498
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 142/541 (26%), Positives = 225/541 (41%), Gaps = 69/541 (12%)
Query: 20 LERAATVYGD-CP-SIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM 77
L RAAT D C ++ L T ++ R +A+ L + G+ V+VVAPN +
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 78 YEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIK 137
A A+ GA+ +N RL + ++ L++ E ++ + V +AI S +
Sbjct: 68 VIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQ--VADAIFQSGSGAR 125
Query: 138 CPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKW----IRPQNE-WDPMI 192
++ + D LV G+P + + PQ E P
Sbjct: 126 ---IIFLGD------------------------LVRDGEP-YSYGPPIEDPQREPAQPAF 157
Query: 193 LNYTSGTTSSPKGVVHCHRGI--FVMTVDSLIDWSIPKQPVYLWTLPMFHANGW-SYPWG 249
+ YTSGTT PK + R V+ + + + V L P++H G+ +
Sbjct: 158 IFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVA 217
Query: 250 MAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNPVHI 305
A+ GT V + +F ++++Q VT + P L+ ++ S L + H+
Sbjct: 218 ALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHV 277
Query: 306 LTAGAPPPAAVLFRT-ESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQ 364
AGA P AVL + L + YG TE A + + R P T
Sbjct: 278 TFAGATXPDAVLETVHQHLPGEKVNIYGTTE--------AXNSLYXRQPKTGTEXAPG-- 327
Query: 365 GVRTVCFTEIDVIDSESGLSVSHDGASLGE-IVFRGGSMMLGYLKDPNGTRKCMKDDGWF 423
F+E+ ++ G+ GE IV S +GYL P T + ++D GW+
Sbjct: 328 -----FFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQD-GWY 381
Query: 424 YTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWG 483
T DV V +G + I R D IISGGEN+ E+E VL T P V E V+ D+ WG
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWG 441
Query: 484 E--TPCAFLSLKAELEKKPTEKEIIEYCR-ARLPRYMVPKTVVFKEELPKTSTGKIKKFE 540
+ T C L L + +CR + L + PK ++LPK + K+ + +
Sbjct: 442 QSVTACVVPRLGETLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQ 497
Query: 541 L 541
L
Sbjct: 498 L 498
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 140/547 (25%), Positives = 220/547 (40%), Gaps = 71/547 (12%)
Query: 19 FLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMY 78
L A YGD +I N +++ + R +LA+ +GI + V V PNI +
Sbjct: 30 LLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF 89
Query: 79 EAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLV-------DYQSRNLVVEAISL 131
E FA+ GA+ + I+ + +E+ ++ DY+S V++
Sbjct: 90 EVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQS--- 146
Query: 132 FPSDIKCPPL--VLIADHTDHDNDNKSSQTVDSNFCCTYESLVTK--GDPNFKWIRPQNE 187
K P L +++A + E L T+ P K
Sbjct: 147 -----KLPTLKNIIVAGEAEE--------------FLPLEDLHTEPVKLPEVK------S 181
Query: 188 WDPMILNYTSGTTSSPKGVVHCHRG-IFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSY 246
D L + G+T K + H I+ + + W + VYL LP H S
Sbjct: 182 SDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHSTVYLAALPXAHNYPLSS 240
Query: 247 P--WGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLP--RSEPLRNP 302
P G+ GG V + +I + VT P + + + R + L +
Sbjct: 241 PGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSL 300
Query: 303 VHILTAGAPPPAAVLFRTES-LGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMK 361
+ GA A R ++ G + +G E GLV + RL E +
Sbjct: 301 QVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAE--GLV-------NYTRLDDPEEIIVN 351
Query: 362 SRQGVRTVCFTEIDVIDSESGLSVSHDG----ASLGEIVFRGGSMMLGYLKDPNGTRKCM 417
+ QG + E V D HD G ++ RG + GY K
Sbjct: 352 T-QGKPXSPYDESRVWDD-------HDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASF 403
Query: 418 KDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVAR 477
+DG++ TGD+ + DGY+ ++ R+KD I GGE +++ EVE+ L +PAV++AA V+
Sbjct: 404 TEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSX 463
Query: 478 PDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRAR-LPRYMVPKTVVFKEELPKTSTGKI 536
PD+F GE C F+ + E P E+ + R R L Y +P V F E P+T GK+
Sbjct: 464 PDQFLGERSCVFIIPRDE---APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKV 520
Query: 537 KKFELRE 543
K LRE
Sbjct: 521 SKKALRE 527
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/354 (26%), Positives = 159/354 (44%), Gaps = 24/354 (6%)
Query: 195 YTSGTTSSPKGVVHCHRGIFVMTVDSLID-WSIPKQPVYLWTLPMFHANGWSYPWGMAAV 253
YTSGTT G + H + ++ +L+D W V + LP++H +G +
Sbjct: 162 YTSGTTGRSXGAMLSHDNLASNSL-TLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220
Query: 254 G-GTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR-SEPLRNPVHILTAGAP 311
G+ + L FD I ++ + T + G P + PR + + + +G+
Sbjct: 221 ARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSA 278
Query: 312 PPAAVLFR--TESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTV 369
P A R + G V YG+TET ++ + +R+P A + GV
Sbjct: 279 PLLADTHREWSAXTGHAVLERYGMTETN---MNTSNPYDGDRVPG---AVGPALPGVSA- 331
Query: 370 CFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVG 429
V D E+G + +G I G ++ GY + P T +DDG+F TGD+G
Sbjct: 332 -----RVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLG 384
Query: 430 VIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAF 489
I GY+ I R D++I+GG N+ E+ES + P V E+AV+ P +GE A
Sbjct: 385 XIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFGEGVTAV 444
Query: 490 LSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 543
+ + E +++ +L + +P V+F ++LP+ + G ++ LRE
Sbjct: 445 --VVRDXGATIDEAQVLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNVLRE 496
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 132/544 (24%), Positives = 223/544 (40%), Gaps = 54/544 (9%)
Query: 13 PLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAP 72
PLT + L R A D ++I ++ + ++ LA SL GI G V
Sbjct: 28 PLTDI--LTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLG 83
Query: 73 NIPAMYEAHFAIPFTG-----AILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVE 127
N+ +Y FA+ G A+ ++ + L+A + E L++ D Q
Sbjct: 84 NVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQI-----EPALLIADRQH------ 132
Query: 128 AISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNE 187
+LF D V T+H + DS +++ + P +E
Sbjct: 133 --ALFSGDDFLNTFV-----TEHSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADE 185
Query: 188 WDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYP 247
+ GTT +PK + H + S+ +Q YL +P H S P
Sbjct: 186 V--AYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSP 243
Query: 248 --WGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNM-----ISNLPRSEPLR 300
G+ GGT V A + + +I +H V P +++ I R++ L
Sbjct: 244 GSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQ-LA 302
Query: 301 NPVHILTAGAPPPAAVLFRTES-LGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERAR 359
+ + GA A + R + +G + +G+ E GLV + RL + +
Sbjct: 303 SLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE--GLV-------NYTRLDDSAE-K 352
Query: 360 MKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKD 419
+ QG E+ V D+E +G ++ RG GY K P
Sbjct: 353 IIHTQGYPMCPDDEVWVADAEGN---PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDA 409
Query: 420 DGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPD 479
+G++ +GD+ I +GY+ ++ R KD I GGE +++ E+E++L +PAV AA+V+ D
Sbjct: 410 NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMED 469
Query: 480 EFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKF 539
E GE CA+L +K L + + E + + +P V + LP T+ GK+ K
Sbjct: 470 ELMGEKSCAYLVVKEPLRAVQVRRFLREQG---IAEFKLPDRVECVDSLPLTAVGKVDKK 526
Query: 540 ELRE 543
+LR+
Sbjct: 527 QLRQ 530
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 126/532 (23%), Positives = 218/532 (40%), Gaps = 61/532 (11%)
Query: 32 SIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAIL 91
+II ++ + R LA+ L+ G+ +G V PN+ Y FA+ G ++
Sbjct: 48 AIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107
Query: 92 NNINTRLDARTISVLLQHSESKLVLVDYQ----SRNLVVEAISLFPSDIKC-PPLVLIAD 146
N ++ ++ + KL++ Q S N ++++ D+ P ++L+ +
Sbjct: 108 LNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLH----DVNLSPEIILMLN 163
Query: 147 HTDHDN------DNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTT 200
H D + + VD F T P +E + G+T
Sbjct: 164 HQATDFGLLDWIETPAETFVD--FSST----------------PADEV--AFFQLSGGST 203
Query: 201 SSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYP--WGMAAVGGTNV 258
+PK + H S + L LP H S P G+ GG V
Sbjct: 204 GTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263
Query: 259 CLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHIL----TAGAPPPA 314
+ + +I++H V P + M L ++ ++ + L GA P
Sbjct: 264 MAPNPEPLNCFSIIQRHQVNMASLVPSAVIMW--LEKAAQYKDQIQSLKLLQVGGASFPE 321
Query: 315 AVLFRT-ESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTE 373
++ + E L + +G+ E GLV + RL ++ ++ + QG E
Sbjct: 322 SLARQVPEVLNCKLQQVFGMAE--GLV-------NYTRLDDSDE-QIFTTQGRPISSDDE 371
Query: 374 IDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHA 433
I ++D E V +G + RG GY + P + +D ++Y+GD+
Sbjct: 372 IKIVD-EQYREVPE--GEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP 428
Query: 434 DGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFL-SL 492
DG L + R KD I GGE ++S E+E ++ +P V AA+VA DE +GE CAF+ S
Sbjct: 429 DGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSR 488
Query: 493 KAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREM 544
EL+ + ++E A +Y +P + E LP T+ GK+ K +LR +
Sbjct: 489 NPELKAVVLRRHLMELGIA---QYKLPDQIKLIESLPLTAVGKVDKKQLRSI 537
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 102 bits (255), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 130/564 (23%), Positives = 231/564 (40%), Gaps = 64/564 (11%)
Query: 20 LERAATVYGDCPSIIY------NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN 73
L+R GD +II+ + ++ + HR + A++L +GI +G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQS----RNLVVEA- 128
+P A A GA+ + I ++ + S S+LV+ + R++ ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 129 --ISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQN 186
+L ++ V++ T D D + + + + L+ K P + N
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL------WWRDLIEKASPEHQ-PEAMN 254
Query: 187 EWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQP--VYLWTLPMFHANGW 244
DP+ + YTSG+T PKGV+H G V + + P +Y T + G
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGH 313
Query: 245 SYP-WGMAAVGGTNVCLRKF----DAAVIYKMIRQHGVTHMCGAPVVLNMI---SNLPRS 296
SY +G A G T + A + +++ +H V + AP + + +
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Query: 297 EPLRNPVHILTAGAPP--PAAVLFRTESLGFL---VSHGYGLTETAGLVVSCAWKNKWNR 351
R+ + IL + P P A + + +G V + TET G +++
Sbjct: 374 GTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT--------- 424
Query: 352 LPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRG-----GSMMLG- 405
P +K+ R + ++D+E +GA+ G +V + G
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSWPGQARTLFGD 480
Query: 406 ---YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
+ + T K M +++GD DGY I R DV+ G L + E+ES
Sbjct: 481 HERFEQTYFSTFKNM-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 463 LYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPT-EKEIIEYCRARLPRYMVPKT 521
L +P + EAAVV P G+ A+++L E P E+ + R + P
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 595
Query: 522 VVFKEELPKTSTGKIKKFELREMA 545
+ + + LPKT +GKI + LR++A
Sbjct: 596 LHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 137/517 (26%), Positives = 224/517 (43%), Gaps = 52/517 (10%)
Query: 41 TWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDA 100
T+ + R + AS+L ++G+ + +V + A+ A + G + NT L
Sbjct: 50 TYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTP 109
Query: 101 RTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTV 160
+L HS ++ V+ V +A+ D C +V ++ + +
Sbjct: 110 ADYVYMLTHSHARAVIASGALVQNVTQALESAEHD-GCQLIVSQPRESEPRLAPLFEELI 168
Query: 161 DSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIF-VMTVD 219
D+ + D F W+ Y+SG+T PKG VH H ++ +
Sbjct: 169 DAAAPAAKAAATGCDDIAF-WL------------YSSGSTGKPKGTVHTHANLYWTAELY 215
Query: 220 SLIDWSIPKQPVYLWTLPMFHA----NGWSYPWGMAAVGGTNVCL-RKFDAAVIYKMIRQ 274
+ I + V +F A NG ++P +VG T + + + A I+ + +
Sbjct: 216 AKPILGIAENDVVFSAAKLFFAYGLGNGLTFPL---SVGATAILMAERPTADAIFARLVE 272
Query: 275 HGVTHMCGAPVVL-NMI--SNLPRSEPLRNPVHILT-AGAPPPAAVLFR-TESLGFLVSH 329
H T G P + NM+ NLP + + I T AG P + R T G +
Sbjct: 273 HRPTVFYGVPTLYANMLVSPNLPARADV--AIRICTSAGEALPREIGERFTAHFGCEILD 330
Query: 330 GYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDG 389
G G TE + +S NR A E R V EI++ D E+G +V DG
Sbjct: 331 GIGSTEMLHIFLS-------NRAGAVEYGTTG-----RPVPGYEIELRD-EAGHAVP-DG 376
Query: 390 ASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIIS 449
+G++ +G S + Y + +R + W +GD +G RS D++
Sbjct: 377 -EVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKV 434
Query: 450 GGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTE---KEII 506
G+ +S VEVE VL + AV EAAVV +T AF+ LK E P+E +E+
Sbjct: 435 SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTR-AFVVLKREF--APSEILAEELK 491
Query: 507 EYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 543
+ + RL + P+ +VF ++LPKT+TGKI++F+LRE
Sbjct: 492 AFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 130/564 (23%), Positives = 231/564 (40%), Gaps = 64/564 (11%)
Query: 20 LERAATVYGDCPSIIY------NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN 73
L+R GD +II+ + ++ + HR + A++L +GI +G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQS----RNLVVEA- 128
+P A A GA+ + I ++ + S S+LV+ + R++ ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 129 --ISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQN 186
+L ++ V++ T D D + + + + L+ K P + N
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL------WWRDLIEKASPEHQ-PEAMN 254
Query: 187 EWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQP--VYLWTLPMFHANGW 244
DP+ + YTSG+T PKGV+H G V + + P +Y T + G
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGH 313
Query: 245 SYP-WGMAAVGGTNVCLRKF----DAAVIYKMIRQHGVTHMCGAPVVLNMI---SNLPRS 296
SY +G A G T + A + +++ +H V + AP + + +
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Query: 297 EPLRNPVHILTAGAPP--PAAVLFRTESLGFL---VSHGYGLTETAGLVVSCAWKNKWNR 351
R+ + IL + P P A + + +G V + TET G +++
Sbjct: 374 GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT--------- 424
Query: 352 LPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRG-----GSMMLG- 405
P +K+ R + ++D+E +GA+ G +V + G
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSWPGQARTLFGD 480
Query: 406 ---YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
+ + T K M +++GD DGY I R DV+ G L + E+ES
Sbjct: 481 HERFEQTYFSTFKNM-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 463 LYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPT-EKEIIEYCRARLPRYMVPKT 521
L +P + EAAVV P G+ A+++L E P E+ + R + P
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 595
Query: 522 VVFKEELPKTSTGKIKKFELREMA 545
+ + + LPKT +GKI + LR++A
Sbjct: 596 LHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 133/568 (23%), Positives = 230/568 (40%), Gaps = 72/568 (12%)
Query: 20 LERAATVYGDCPSIIY------NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN 73
L+R GD +II+ + ++ + HR + A++L +GI +G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFP 133
+P A A GA+ + I ++ + S S+LV+ + V A + P
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEG----VRAGASIP 197
Query: 134 ------SDIKCPPL-----VLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWI 182
+K P + V++ T D D + + + + L+ K P +
Sbjct: 198 LKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL------WWRDLIEKASPEHQ-P 250
Query: 183 RPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQP--VYLWTLPMFH 240
N DP+ + YTSG+T PKGV+H G V + + P +Y T +
Sbjct: 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF-KYVFDYHPGDIYWCTADVGW 309
Query: 241 ANGWSYP-WGMAAVGGTNVCLRKF----DAAVIYKMIRQHGVTHMCGAPVVLNMI---SN 292
G SY +G A G T + A + +++ +H V + AP + + +
Sbjct: 310 VTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGD 369
Query: 293 LPRSEPLRNPVHILTAGAPP--PAAVLFRTESLGFL---VSHGYGLTETAGLVVSCAWKN 347
R+ + IL + P P A + + +G V + TET G +++
Sbjct: 370 KAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT----- 424
Query: 348 KWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRG-----GSM 402
P +K+ R + ++D+E +GA+ G +V
Sbjct: 425 -----PLPGAIELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSWPGQART 476
Query: 403 MLG----YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVE 458
+ G + + T K M +++GD DGY I R DV+ G L + E
Sbjct: 477 LFGDHERFEQTYFSTFKNM-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAE 531
Query: 459 VESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPT-EKEIIEYCRARLPRYM 517
+ES L +P + EAAVV P G+ A+++L E P E+ + R +
Sbjct: 532 IESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLA 591
Query: 518 VPKTVVFKEELPKTSTGKIKKFELREMA 545
P + + + LPKT +GKI + LR++A
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 130/564 (23%), Positives = 231/564 (40%), Gaps = 64/564 (11%)
Query: 20 LERAATVYGDCPSIIY------NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN 73
L+R GD +II+ + ++ + HR + A++L +GI +G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQS----RNLVVEA- 128
+P A A GA+ + I ++ + S S+LV+ + R++ ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 129 --ISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQN 186
+L ++ V++ T D D + + + + L+ K P + N
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL------WWRDLIEKASPEHQ-PEAMN 254
Query: 187 EWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQP--VYLWTLPMFHANGW 244
DP+ + YTSG+T PKGV+H G V + + P +Y T + G
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGH 313
Query: 245 SYP-WGMAAVGGTNVCLRKF----DAAVIYKMIRQHGVTHMCGAPVVLNMI---SNLPRS 296
SY +G A G T + A + +++ +H V + AP + + +
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Query: 297 EPLRNPVHILTAGAPP--PAAVLFRTESLGFL---VSHGYGLTETAGLVVSCAWKNKWNR 351
R+ + IL + P P A + + +G V + TET G +++
Sbjct: 374 GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT--------- 424
Query: 352 LPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRG-----GSMMLG- 405
P +K+ R + ++D+E +GA+ G +V + G
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSWPGQARTLFGD 480
Query: 406 ---YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
+ + T K M +++GD DGY I R DV+ G L + E+ES
Sbjct: 481 HERFEQTYFSTFKNM-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 463 LYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPT-EKEIIEYCRARLPRYMVPKT 521
L +P + EAAVV P G+ A+++L E P E+ + R + P
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 595
Query: 522 VVFKEELPKTSTGKIKKFELREMA 545
+ + + LPKT +GKI + LR++A
Sbjct: 596 LHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 128/567 (22%), Positives = 227/567 (40%), Gaps = 73/567 (12%)
Query: 21 ERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLS-SIGITRGHVVSVVAPNIPAMYE 79
++A GD P Y+ T+ + Q+A L+ S+G+ +G V+V P +P
Sbjct: 98 KKAIIFEGDEPGQGYS---ITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAII 154
Query: 80 AHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSR--NLVVEAISLFPSDIK 137
AI GAI + + + ++ + +SK+V+ +S V+E + ++
Sbjct: 155 TLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR 214
Query: 138 CPPLVL------------IADHTDHDND-NKSSQTVDSNFCCTYESLVTKGDPNFKWIRP 184
P V +A H D D + + + CT P
Sbjct: 215 ETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCT----------------P 258
Query: 185 QNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSL-IDWSIPKQPVYLWTLPMFHANG 243
+ DP+ L YTSG+T +PKGV H G + + ++ + ++ V+ + G
Sbjct: 259 VDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITG 318
Query: 244 WSYP-WGMAAVGGTNVCLRKFDAAVIYK----MIRQHGVTHMCGAPVVLNMISNLPRS-- 296
+Y +G G + A Y +I +H VT AP L ++ S
Sbjct: 319 HTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYI 378
Query: 297 --EPLRNPVHILTAGAPPPAAVL-FRTESLG---FLVSHGYGLTETAGLVVSCAWKNKWN 350
L++ + + G P A V + +E +G + Y TE+ +V+
Sbjct: 379 ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTP 438
Query: 351 RLPATERARMKSRQGVRTVCFT-----EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLG 405
P + G+ V E++ +E L+V S +++ L
Sbjct: 439 MKPGSASFPF---FGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLD 495
Query: 406 YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYT 465
+P G+++TGD DGY+ I R DV+ G LS+ E+E+ +
Sbjct: 496 TYLNPY--------PGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIE 547
Query: 466 NPAVNEAAVVARPDEFWGETPCAFLSLK--------AELEKKPTEKEIIEYCRARLPRYM 517
+P V E AVV D+ G+ AF+ LK + E + +K ++ R + +
Sbjct: 548 DPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFA 607
Query: 518 VPKTVVFKEELPKTSTGKIKKFELREM 544
PK ++ ++LPKT +GKI + LR++
Sbjct: 608 APKLIILVDDLPKTRSGKIMRRILRKI 634
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 129/564 (22%), Positives = 230/564 (40%), Gaps = 64/564 (11%)
Query: 20 LERAATVYGDCPSIIY------NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN 73
L+R GD +II+ + ++ + HR + A++L +GI +G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQS----RNLVVEA- 128
+P A A GA+ + I ++ + S S+LV+ + R++ ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 129 --ISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQN 186
+L ++ V++ T D D + + + + L+ K P + N
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL------WWRDLIEKASPEHQ-PEAMN 254
Query: 187 EWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQP--VYLWTLPMFHANGW 244
DP+ + YTSG+T PKGV+H G V + + P +Y T + G
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGH 313
Query: 245 SYP-WGMAAVGGTNVCLRKF----DAAVIYKMIRQHGVTHMCGAPVVLNMI---SNLPRS 296
SY +G A G T + A + +++ +H V + AP + + +
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Query: 297 EPLRNPVHILTAGAPP--PAAVLFRTESLGFL---VSHGYGLTETAGLVVSCAWKNKWNR 351
R+ + IL + P P A + + +G V + TET G +++
Sbjct: 374 GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT--------- 424
Query: 352 LPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRG-----GSMMLG- 405
P +K+ R + ++D+E +GA+ G +V + G
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSWPGQARTLFGD 480
Query: 406 ---YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
+ + T K M +++GD DGY I R DV+ G L + E+ES
Sbjct: 481 HERFEQTYFSTFKNM-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 463 LYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPT-EKEIIEYCRARLPRYMVPKT 521
L +P + EAAVV P G+ A+++L E P E+ + R + P
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 595
Query: 522 VVFKEELPKTSTGKIKKFELREMA 545
+ + + LPKT +G I + LR++A
Sbjct: 596 LHWTDSLPKTRSGAIMRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 129/564 (22%), Positives = 230/564 (40%), Gaps = 64/564 (11%)
Query: 20 LERAATVYGDCPSIIY------NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN 73
L+R GD +II+ + ++ + HR + A++L +GI +G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQS----RNLVVEA- 128
+P A A GA+ + I ++ + S S+LV+ + R++ ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 129 --ISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQN 186
+L ++ V++ T D D + + + + L+ K P + N
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL------WWRDLIEKASPEHQ-PEAMN 254
Query: 187 EWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQP--VYLWTLPMFHANGW 244
DP+ + YTSG+T PKGV+H G V + + P +Y T + G
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGH 313
Query: 245 SYP-WGMAAVGGTNVCLRKF----DAAVIYKMIRQHGVTHMCGAPVVLNMI---SNLPRS 296
SY +G A G T + A + +++ +H V + AP + + +
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Query: 297 EPLRNPVHILTAGAPP--PAAVLFRTESLGFL---VSHGYGLTETAGLVVSCAWKNKWNR 351
R+ + IL + P P A + + +G V + TET G +++
Sbjct: 374 GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT--------- 424
Query: 352 LPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRG-----GSMMLG- 405
P +K+ R + ++D+E +GA+ G +V + G
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSWPGQARTLFGD 480
Query: 406 ---YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
+ + T K M +++GD DGY I R DV+ G L + E+ES
Sbjct: 481 HERFEQTYFSTFKNM-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 463 LYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPT-EKEIIEYCRARLPRYMVPKT 521
L +P + EAAVV P G+ A+++L E P E+ + + P
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVEKEIGPLATPDV 595
Query: 522 VVFKEELPKTSTGKIKKFELREMA 545
+ + + LPKT +GKI + LR++A
Sbjct: 596 LHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 129/564 (22%), Positives = 230/564 (40%), Gaps = 64/564 (11%)
Query: 20 LERAATVYGDCPSIIY------NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN 73
L+R GD +II+ + ++ + HR + A++L +GI +G VV++ P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 74 IPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQS----RNLVVEA- 128
+P A A GA+ + I ++ + S S+LV+ + R++ ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKN 201
Query: 129 --ISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQN 186
+L ++ V++ T D D + + + + L+ K P + N
Sbjct: 202 VDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDL------WWRDLIEKASPEHQ-PEAMN 254
Query: 187 EWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQP--VYLWTLPMFHANGW 244
DP+ + YTSG+T PKGV+H G V + + P +Y T + G
Sbjct: 255 AEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF-KYVFDYHPGDIYWCTADVGWVTGH 313
Query: 245 SYP-WGMAAVGGTNVCLRKF----DAAVIYKMIRQHGVTHMCGAPVVLNMI---SNLPRS 296
SY +G A G T + A + +++ +H V + AP + + +
Sbjct: 314 SYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIE 373
Query: 297 EPLRNPVHILTAGAPP--PAAVLFRTESLGFL---VSHGYGLTETAGLVVSCAWKNKWNR 351
R+ + IL + P P A + + +G V + TET G +++
Sbjct: 374 GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT--------- 424
Query: 352 LPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRG-----GSMMLG- 405
P +K+ R + ++D+E +GA+ G +V + G
Sbjct: 425 -PLPGAIELKAGSATRPFFGVQPALVDNEGH---PQEGATEGNLVITDSWPGQARTLFGD 480
Query: 406 ---YLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
+ + T K M +++GD DGY I R DV+ G L + E+ES
Sbjct: 481 HERFEQTYFSTFKNM-----YFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESA 535
Query: 463 LYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPT-EKEIIEYCRARLPRYMVPKT 521
L +P + EAAVV P G+ A+++L E P E+ + + P
Sbjct: 536 LVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVAKEIGPLATPDV 595
Query: 522 VVFKEELPKTSTGKIKKFELREMA 545
+ + + LPKT +GKI + LR++A
Sbjct: 596 LHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 28/296 (9%)
Query: 262 KFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSE-PLRNPVHILTAGAPPPAAVLFR- 319
+F+A + + ++GVT C P + + S + + AG P V R
Sbjct: 302 RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRF 361
Query: 320 TESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGV--RTVCFTEIDVI 377
E G + G+G TET + + W M+ + G + +I+++
Sbjct: 362 LEFTGIKLMEGFGQTETVVTIATFPW--------------MEPKPGSIGKPTPGYKIELM 407
Query: 378 DSESGLSVSHDGASLGEIVF-----RGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIH 432
D + L + GEIV + + + Y KDP T + D G+++TGD+ +
Sbjct: 408 DRDGRLC---EVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHD-GYYHTGDMAWMD 463
Query: 433 ADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSL 492
DGYL R+ D+I + G + EVES L +PAV E A+ PD G+ A + L
Sbjct: 464 EDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVL 523
Query: 493 KAELEKKPTEK-EIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKA 547
+ + K E+ ++ + Y P+ + F ELPKT +GKI++ E+R+ ++
Sbjct: 524 TKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 118/549 (21%), Positives = 218/549 (39%), Gaps = 74/549 (13%)
Query: 9 ANSSPLTPLGF-LERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVV 67
A + PL + + A D P++ Y+ ++ + ++A L G +G VV
Sbjct: 458 AQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVV 517
Query: 68 SVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVE 127
++ + + GA ++ +L IS +L S + +L + + E
Sbjct: 518 ALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE 577
Query: 128 ----AISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIR 183
+LF I D T + Q D T DPN
Sbjct: 578 LPYTGTTLF-----------IDDQTRFE-----EQASDP---------ATAIDPN----- 607
Query: 184 PQNEWDPMILNYTSGTTSSPKGVVHCHRGI--FVMTVDSLIDWSIPKQPVYLWTLPMFHA 241
DP + YTSGTT PKG + H I V VD + + Q +L ++ +
Sbjct: 608 -----DPAYIMYTSGTTGKPKGNITTHANIQGLVKHVDYM---AFSDQDTFL-SVSNYAF 658
Query: 242 NGWSYPWGMAAVGGTNVCLRK----FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRS- 296
+ +++ + + + + + D + +I Q V M + N++++
Sbjct: 659 DAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDW 718
Query: 297 -EPLRNPVHILTAGAPPPAAVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPAT 355
+ LR + + P R G L++ YG TE G V + A + + LP +
Sbjct: 719 MKGLRCILFGGERASVPHVRKALRIMGPGKLIN-CYGPTE--GTVFATA--HVVHDLPDS 773
Query: 356 ERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRK 415
+ S + + + +++ +S L ++GE+ G + GY+ + T++
Sbjct: 774 ----ISSLPIGKPISNASVYILNEQSQL---QPFGAVGELCISGMGVSKGYVNRADLTKE 826
Query: 416 CMKDDGW------FYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAV 469
++ + + TGD+ DG +E R D + G + E+E L P V
Sbjct: 827 KFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGV 886
Query: 470 NEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELP 529
+A VVA E + A+L + +L + +++ + + +LP YMVP+T F +ELP
Sbjct: 887 KDAVVVADRHESGDASINAYLVNRTQL----SAEDVKAHLKKQLPAYMVPQTFTFLDELP 942
Query: 530 KTSTGKIKK 538
T+ GK+ K
Sbjct: 943 LTTNGKVNK 951
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 120/541 (22%), Positives = 204/541 (37%), Gaps = 73/541 (13%)
Query: 19 FLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMY 78
E A D ++++ T+ + R +LA L +G+ G +V V M
Sbjct: 80 LFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV 139
Query: 79 EAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKC 138
A A+ G ++ + +++ L+ + + L++ + +L+ D
Sbjct: 140 VALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTTLYVEDEAA 199
Query: 139 PPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSG 198
+D N ++ + C +TSG
Sbjct: 200 ---------SDAPAGNLATGVGPEDVACVM--------------------------FTSG 224
Query: 199 TTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVG---- 254
+T PKGV+ HR + + P + V+L P+ W +G+ G
Sbjct: 225 STGRPKGVMSPHRALTGTYLGQDYAGFGPDE-VFLQCSPV----SWDA-FGLELFGALLF 278
Query: 255 GTNVCLRKF---DAAVIYKMIRQHGVTHMCGAPVVLN-MISNLPRSEPLRNPVHILTAGA 310
G L+ D I +++ +HGVT + + + N ++ +P E + +T G
Sbjct: 279 GARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP--EAFEGVRYAITGGE 336
Query: 311 PP--PAAVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRT 368
P P R + + +GYG E+ G A L T G R
Sbjct: 337 PASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVA--GDLSGTALPIGVPLAGKRA 394
Query: 369 VCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW------ 422
V+D + L + +GA LGE+ G + GY+ P T + D +
Sbjct: 395 Y------VLDDD--LKPAANGA-LGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGE 445
Query: 423 --FYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDE 480
+ TGD+ ADG LE R+ D + G + EVE+ L +PAV +AAV+A+ D
Sbjct: 446 RMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQ-DS 504
Query: 481 FWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFE 540
G+ + + P E+ + LP YMVP V +ELP+T GK+ +
Sbjct: 505 RLGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRA 564
Query: 541 L 541
L
Sbjct: 565 L 565
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 36/372 (9%)
Query: 184 PQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSI---PKQPVYLWTLPMFH 240
P D + YTSGTT +PKG + H+GI + V + S+ K + + F
Sbjct: 178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKV--FFENSLNVTEKDRIGQFASISFD 235
Query: 241 ANGWSYPWGMAAVGGTNVCLRKF--DAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEP 298
A+ W + + L+ D + I Q +T + P + + E
Sbjct: 236 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLD----PER 291
Query: 299 LRNPVHILTAG-APPPAAVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATER 357
+ + ++TAG A P+ V E + ++ + YG TET + + W AT+
Sbjct: 292 ILSIQTLITAGSATSPSLVNKWKEKVTYI--NAYGPTETT--ICATTW-------VATKE 340
Query: 358 ARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCM 417
S + T+I ++D L + G + GE+ G + GY K P T +
Sbjct: 341 TIGHSVPIGAPIQNTQIYIVDE--NLQLKSVGEA-GELCIGGEGLARGYWKRPELTSQKF 397
Query: 418 KDDGW------FYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNE 471
D+ + + TGD +DG +E R + + G + EVES+L + ++E
Sbjct: 398 VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISE 457
Query: 472 AAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKT 531
AV D CA+ + + P E ++ ++ LP YM+P + +++P T
Sbjct: 458 TAVSVHKDHQEQPYLCAYFVSEKHI---PLE-QLRQFSSEELPTYMIPSYFIQLDKMPLT 513
Query: 532 STGKIKKFELRE 543
S GKI + +L E
Sbjct: 514 SNGKIDRKQLPE 525
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 98/395 (24%), Positives = 151/395 (38%), Gaps = 64/395 (16%)
Query: 180 KWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPV-----YLW 234
+W++ E + + YTSG+T +PKGV I + S DW PV +L
Sbjct: 138 QWVK---EHETFYIIYTSGSTGNPKGV-----QISAANLQSFTDWICADFPVSGGKIFLN 189
Query: 235 TLPMFHANGWSYPWGMAAVGGTNVCLRKFDAA----VIYKMIRQHGVTHMCGAPVVLNMI 290
P + GGT C+ K DA V+++ +++ G+ P + M
Sbjct: 190 QAPFSFDLSVMDLYPCLQSGGTLHCVTK-DAVNKPKVLFEELKKSGLNVWTSTPSFVQMC 248
Query: 291 --------SNLPRSEPLRNPVHILTAGAPP------PAAVLFRTESLGFLVSHGYGLTET 336
LP ++ +L P A +F T YG TE
Sbjct: 249 LMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNT----------YGPTEA 298
Query: 337 AGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDV---IDSESGLSVSHDGASLG 393
V S N + SR V F + D+ I E G + G
Sbjct: 299 TVAVTSVEITND-----------VISRSESLPVGFAKPDMNIFIMDEEGQPLPE--GEKG 345
Query: 394 EIVFRGGSMMLGYLKDPNGTRKCM--KDDGWFY-TGDVGVIHADGYLEIKDRSKDVIISG 450
EIV G S+ GYL +P T K + W Y TGD G I DG + + R I
Sbjct: 346 EIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLH 404
Query: 451 GENLSSVEVESVLYTNPAVNEAAVVA-RPDEFWGETPCAFLSLKAELEKK-PTEKEIIEY 508
G + E+E + + V A V+ +P+ A + + E EK+ I +
Sbjct: 405 GYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKE 464
Query: 509 CRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 543
A LP YM+P+ ++++ + T+ GKI + + E
Sbjct: 465 LAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGE 499
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 124/546 (22%), Positives = 210/546 (38%), Gaps = 83/546 (15%)
Query: 20 LERAATVYGDCPSIIYNNL--IYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM 77
+E+ A D P +Y+ L T+ Q R +A+ + S+ + V V M
Sbjct: 10 IEQFAQTQADFP--VYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM 67
Query: 78 YEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIK 137
A+ +G ++ I +++ ++ L++ AI FP I+
Sbjct: 68 LATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII-----------AIEEFPLTIE 116
Query: 138 CPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTS 197
LV +++ +S++ + + T+ KGD N+ I +TS
Sbjct: 117 GISLVSLSEI-------ESAKLAEMPYERTHS---VKGDDNYYII------------FTS 154
Query: 198 GTTSSPKGVVHCHRGIFVMTVDSLID--WSIPKQPVYLWTLPMFHANGWSYPWGMAAVGG 255
GTT PKGV H + T + D + +PKQP L P Y A+GG
Sbjct: 155 GTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGG 214
Query: 256 TNVCLRK---FDAAVIYKMIRQHGVTHMCGAPVV--LNMISNLPRSEPLRNPVHILTAGA 310
T L K D ++ I Q V P + M+S+ + H G
Sbjct: 215 TLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGE 274
Query: 311 P---PPAAVLFRTESLGFLVSHGYGLTET----AGLVVSCAWKNKWNRLPATERARMKSR 363
A LF ++ + YG TE + + ++ + + RLP
Sbjct: 275 ELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRLP---------- 323
Query: 364 QGVRTVCFTEID----VIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCM-- 417
+ + + D +ID E G +S GEI+ G ++ GYL +P T +
Sbjct: 324 -----IGYPKPDSPTYIID-EDGKELS--SGEQGEIIVTGPAVSKGYLNNPEKTAEAFFT 375
Query: 418 -KDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVA 476
K ++TGD+G + D L R I G + +V L +P V A V
Sbjct: 376 FKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVP 435
Query: 477 RPD-EFWGETPCAFLSLKAEL-EKKPTEKEIIEYCRA----RLPRYMVPKTVVFKEELPK 530
R + E + A++ +K + E+ E E+ + +A + YM+P ++++ LP
Sbjct: 436 RYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPL 495
Query: 531 TSTGKI 536
T GKI
Sbjct: 496 TPNGKI 501
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 130/362 (35%), Gaps = 36/362 (9%)
Query: 193 LNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAA 252
+N++SGTT PK + H GI + + + Q +L P+ WG
Sbjct: 169 INFSSGTTGRPKAIACTHAGITRLCLGQSF-LAFAPQMRFLVNSPLSFDAATLEIWGALL 227
Query: 253 VGGTNVC--LRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAG- 309
GG V L D V+ ++I + G + N + +L + L +LT G
Sbjct: 228 NGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD-PDCLGGLRQLLTGGD 286
Query: 310 ---APPPAAVLFRTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGV 366
P L R L + +GYG TE +C + L + K+ G
Sbjct: 287 ILSVPHVRRALLRHPRLHLV--NGYGPTENT--TFTCCHVVTDDDLEEDDIPIGKAIAG- 341
Query: 367 RTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGW---- 422
T + ++D D A GEIV G + GY D TR + +
Sbjct: 342 -----TAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRNDAARTRASFVELPYRGRL 394
Query: 423 ---FYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPD 479
+ TGD G L R + G L +E P + + A++ R
Sbjct: 395 LRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRER 454
Query: 480 EFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKF 539
+ CA+ KA+ + ++ LP + P V E LP T+ GK+ +
Sbjct: 455 NGVKQLLCAWTG-KADASPQALLRQ--------LPTWQRPHACVRVEALPLTAHGKLDRA 505
Query: 540 EL 541
L
Sbjct: 506 AL 507
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 11/170 (6%)
Query: 377 IDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGY 436
I +E+G V+ +G I G S+ GY D ++ + GW TGD+G + DGY
Sbjct: 397 IRNEAGXPVAER--VVGHICISGPSLXSGYFGD-QVSQDEIAATGWLDTGDLGYL-LDGY 452
Query: 437 LEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAEL 496
L + R KD+II G N+ ++E + P ++ +A F L ++ +
Sbjct: 453 LYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIA----FVTAQEKIILQIQCRI 508
Query: 497 EKKPTEKEIIEYCRARLP-RYMVPKTVVF--KEELPKTSTGKIKKFELRE 543
+ ++I AR+ + V + +P+TS+GK + E ++
Sbjct: 509 SDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKK 558
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 152/402 (37%), Gaps = 65/402 (16%)
Query: 174 KGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYL 233
KGD NF I YTSG+T +PKGV + + T ++ D+++ V+L
Sbjct: 142 KGDENFYII------------YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 234 WTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAV---IYKMIRQHGV---------THMC 281
P + GGT + K A ++ + Q + MC
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 282 ------GAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTESLGFLVSHGYGLTE 335
++ NM + L E L N V P A ++ + YG TE
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIM-----------NTYGPTE 298
Query: 336 TA----GLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGAS 391
G+ V+ +++ LP C ++ ++ + +++ DG
Sbjct: 299 ATVAVTGIHVTEEVLDQYKSLPVG-------------YCKSDCRLLIMKEDGTIAPDGEK 345
Query: 392 LGEIVFRGGSMMLGYLKDPNGTRKC---MKDDGWFYTGDVGVIHADGYLEIKDRSKDVII 448
GEIV G S+ +GYL P T K + + + TGD G + +G L R I
Sbjct: 346 -GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIK 403
Query: 449 SGGENLSSVEVESVLYTNPAVNEAAVV-ARPDEFWGETPCAFLSLKAELEKK-PTEKEII 506
G + E+E L V A +V + E + + + EK+ I
Sbjct: 404 LHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIK 463
Query: 507 EYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAM 548
+ RLP YM+P+ +++ +P T GK+ + +L A+
Sbjct: 464 KELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 91/402 (22%), Positives = 152/402 (37%), Gaps = 65/402 (16%)
Query: 174 KGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYL 233
KGD NF I YTSG+T +PKGV + + T ++ D+++ V+L
Sbjct: 142 KGDENFYII------------YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFL 189
Query: 234 WTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAV---IYKMIRQHGV---------THMC 281
P + GGT + K A ++ + Q + MC
Sbjct: 190 NQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMC 249
Query: 282 ------GAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTESLGFLVSHGYGLTE 335
++ NM + L E L N V P A ++ + YG TE
Sbjct: 250 LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIM-----------NTYGPTE 298
Query: 336 TA----GLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGAS 391
G+ V+ +++ LP C ++ ++ + +++ DG
Sbjct: 299 ATVAVTGIHVTEEVLDQYKSLPVG-------------YCKSDCRLLIMKEDGTIAPDGEK 345
Query: 392 LGEIVFRGGSMMLGYLKDPNGTRKC---MKDDGWFYTGDVGVIHADGYLEIKDRSKDVII 448
GEIV G S+ +GYL P T K + + + TGD G + +G L R I
Sbjct: 346 -GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVE-NGLLFYNGRLDFQIK 403
Query: 449 SGGENLSSVEVESVLYTNPAVNEAAVV-ARPDEFWGETPCAFLSLKAELEKK-PTEKEII 506
G + E+E L V A +V + E + + + EK+ I
Sbjct: 404 LHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIK 463
Query: 507 EYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAM 548
+ RLP YM+P+ +++ +P T GK+ + +L A+
Sbjct: 464 KELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTAL 505
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 40/186 (21%)
Query: 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN--------IPAMYEAHFAIPFTGA 89
+ TWSQ +RR L +A LS G T G V + AP + A+ A+P +
Sbjct: 57 ITLTWSQLYRRTLNVAQELSRCGST-GDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVP 115
Query: 90 ILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTD 149
+ R D+ +L S +L + + VV+ ++ P + PP ++ D D
Sbjct: 116 QGGVTDERSDS-----VLSDSSPVAILTTSSAVDDVVQHVARRPGE--SPPSIIEVDLLD 168
Query: 150 HDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHC 209
D N + D Y L YTSG+T +P GVV
Sbjct: 169 LDAPNGYTFKEDEYPSTAY------------------------LQYTSGSTRTPAGVVMS 204
Query: 210 HRGIFV 215
H+ + V
Sbjct: 205 HQNVRV 210
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 40/186 (21%)
Query: 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN--------IPAMYEAHFAIPFTGA 89
+ TWSQ +RR L +A LS G T G V + AP + A+ A+P +
Sbjct: 57 ITLTWSQLYRRTLNVAQELSRCGST-GDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVP 115
Query: 90 ILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTD 149
+ R D+ +L S +L + + VV+ ++ P + PP ++ D D
Sbjct: 116 QGGVTDERSDS-----VLSDSSPVAILTTSSAVDDVVQHVARRPGE--SPPSIIEVDLLD 168
Query: 150 HDNDNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHC 209
D N + D Y L YTSG+T +P GVV
Sbjct: 169 LDAPNGYTFKEDEYPSTAY------------------------LQYTSGSTRTPAGVVXS 204
Query: 210 HRGIFV 215
H+ + V
Sbjct: 205 HQNVRV 210
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 373 EIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKC----MKDDG----WFY 424
E+ +ID ++ + D +GEI + S+ GY P TR +KDD +
Sbjct: 382 EVKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLR 439
Query: 425 TGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNP 467
TGD+G +H + L + R KD+II G+N ++E L +P
Sbjct: 440 TGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 86/371 (23%), Positives = 140/371 (37%), Gaps = 49/371 (13%)
Query: 195 YTSGTTSSPKGVVHCHRGIFVMTVD--SLIDWSIPKQPVYLWTLPMFHANGWSYP----W 248
YTSGTT +PKGV H + + S+ D+S + W L FH+ + + W
Sbjct: 182 YTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDR----WLL--FHSLSFDFSVWEIW 235
Query: 249 GMAAVGGTNVCLRKFDAAV---IYKMIRQHGVTHMCGAPVV-LNMISNLPRSEPLRNPVH 304
G + G V L + A +I GVT + P L + R + +
Sbjct: 236 GAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLR 295
Query: 305 ILTAGAPPPAAVLFRTESLGFLVS-----HGYGLTETAGLVVSCAWKNKWNRLPATERAR 359
+ G A + R + F + +GYG+TET + A+ R
Sbjct: 296 YVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQDASIIGR 355
Query: 360 MKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGT------ 413
G R V DV E+ GE+ G + GYL+ P T
Sbjct: 356 ALPSFGTRVVGDDGRDVAPGET-----------GELWLSGAQLAEGYLRRPELTAEKFPE 404
Query: 414 ---RKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVN 470
K + ++ TGD+ DG + R+ I G + ++E+ + + V
Sbjct: 405 VTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVV 464
Query: 471 EAAVVAR---PDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEE 527
+A V R P + CA+++ + T +E+ + + LP YM P +
Sbjct: 465 DAVVTVREFKPGDL--RLVCAYVAREG---SATTARELRNHIKTLLPAYMHPARYLPLPG 519
Query: 528 LPKTSTGKIKK 538
LP+T GK+ +
Sbjct: 520 LPRTVNGKVDR 530
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 87/411 (21%), Positives = 148/411 (36%), Gaps = 82/411 (19%)
Query: 157 SQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGI--F 214
++ +D+ E+L T+ + P+N D +L YTSG+T +PKGV + F
Sbjct: 146 TKVLDTKNQSFIENLSTQDTSDILNNYPEN-LDAYLL-YTSGSTGTPKGVRVSRHNLSSF 203
Query: 215 VMTVDSLIDWSIPKQPVYLWTLPMF----------HANGWSYPW--GMAAVGGTNVCLRK 262
LI PK + L + F H W G+ AV G L
Sbjct: 204 SDAWGKLIGNVAPKS-LELGGVGKFLCLASRAFDVHIGEXFLAWRFGLCAVTGER--LSX 260
Query: 263 FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTES 322
D + + R+ GVTH P +L+ +P P + + P ++ +
Sbjct: 261 LDD--LPRTFRELGVTHAGIVPSLLDQTGLVPEDAPHLVYLGVGGEKXTPRTQQIWSSSD 318
Query: 323 LGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESG 382
LV+ YG TE + + C+ R + ++ I G
Sbjct: 319 RVALVNV-YGPTE---VTIGCS--------------------AGRILPDSDTRCIGHPLG 354
Query: 383 LSVSH----------DGASLGEIVFRGGSMMLGYLKDPNGTRKC-MKDDGWFYTGDVGVI 431
SV+H GE+V G + GYL P+ C + + TGD+
Sbjct: 355 DSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRX 414
Query: 432 HADGYLEIKDRSKDVIISGGENL--------------SSVEVESVLYTNPAVNEAAVVAR 477
AD + R + + G+ L + ++V ++L +P ++ +V+
Sbjct: 415 DADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVS- 473
Query: 478 PDEFWGETPCAFLSLKAELE-----KKPTEKEIIEYCRARLPRYMVPKTVV 523
F + A ++ EL K + + C LP Y VP ++
Sbjct: 474 ---FVASSGAA---VRGELRWINENYKEINNSLRQACEQTLPAYXVPDFII 518
>pdb|1E5H|A Chain A, Delta-R307a Deacetoxycephalosporin C Synthase Complexed
With Succinate And Carbon Dioxide
Length = 308
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 414 RKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
R+C++D G FY D G+ E+K +KD++I E+ S E +V
Sbjct: 23 RRCLRDKGLFYLTDCGLTDT----ELKS-AKDIVIDFFEHGSEAEKRAV 66
>pdb|1HJF|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
pdb|1HJG|A Chain A, Alteration Of The Co-Substrate Selectivity Of
Deacetoxycephalosporin C Synthase: The Role Of
Arginine-258
Length = 311
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 414 RKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
R+C++D G FY D G+ E+K +KD++I E+ S E +V
Sbjct: 23 RRCLRDKGLFYLTDCGLTDT----ELKS-AKDIVIDFFEHGSEAEKRAV 66
>pdb|1E5I|A Chain A, Delta-R306 Deacetoxycephalosporin C Synthase Complexed
With Iron And 2-Oxoglutarate
Length = 306
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 414 RKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
R+C++D G FY D G+ E+K +KD++I E+ S E +V
Sbjct: 23 RRCLRDKGLFYLTDCGLTDT----ELKS-AKDIVIDFFEHGSEAEKRAV 66
>pdb|1UNB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Ampicillin
pdb|1UO9|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Succinate
pdb|1UOB|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
2-Oxoglutarate And Penicillin G
pdb|1UOF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Penicillin G
pdb|1UOG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
Deacetoxycephalosporin C
pdb|1DCS|A Chain A, Deacetoxycephalosporin C Synthase From S. Clavuligerus
pdb|1RXF|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
pdb|1RXG|A Chain A, Deacetoxycephalosporin C Synthase Complexed With Fe(Ii)
And 2- Oxoglutarate
pdb|2JB8|A Chain A, Deacetoxycephalosporin C Synthase Complexed With
5-hydroxy- 4-keto Valeric Acid
Length = 311
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 414 RKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
R+C++D G FY D G+ E+K +KD++I E+ S E +V
Sbjct: 23 RRCLRDKGLFYLTDCGLTDT----ELKS-AKDLVIDFFEHGSEAEKRAV 66
>pdb|1W28|A Chain A, Conformational Flexibility Of The C-Terminus With
Implications For Substrate Binding And Catalysis In A
New Crystal Form Of Deacetoxycephalosporin C Synthase
pdb|1W2A|X Chain X, Deacetoxycephalosporin C Synthase (With His-Tag) Complexed
With Fe(Ii) And Ethylene Glycol
pdb|1W2N|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Ampicillin
pdb|1W2O|A Chain A, Deacetoxycephalosporin C Synthase (With A N-Terminal His-
Tag) In Complex With Fe(Ii) And Deacetoxycephalosporin C
Length = 331
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 414 RKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESV 462
R+C++D G FY D G+ E+K +KD++I E+ S E +V
Sbjct: 43 RRCLRDKGLFYLTDCGLTDT----ELKS-AKDLVIDFFEHGSEAEKRAV 86
>pdb|3C4A|A Chain A, Crystal Structure Of Viod Hydroxylase In Complex With Fad
From Chromobacterium Violaceum. Northeast Structural
Genomics Consortium Target Cvr158
Length = 381
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 316 VLFRTESLGFLVSHGYGLTETAG-LVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEI 374
++FRT ++H Y ++T +V C+ + + R E + S + V V E+
Sbjct: 177 LVFRTHGKDIFIAHAYKYSDTXSTFIVECS-EETYARARLGEXSEEASAEYVAKVFQAEL 235
Query: 375 --DVIDSESGL------SVSHDGASLGEIVFRGGSMMLGYLKDPNGT 413
+ S+ GL ++SHD G++V G ++ G+ +GT
Sbjct: 236 GGHGLVSQPGLGWRNFXTLSHDRCHDGKLVLLGDALQSGHFSIGHGT 282
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,102,110
Number of Sequences: 62578
Number of extensions: 730618
Number of successful extensions: 1754
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1551
Number of HSP's gapped (non-prelim): 108
length of query: 556
length of database: 14,973,337
effective HSP length: 104
effective length of query: 452
effective length of database: 8,465,225
effective search space: 3826281700
effective search space used: 3826281700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)