Query 045072
Match_columns 556
No_of_seqs 174 out of 1618
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 16:46:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 8.1E-82 2.8E-86 658.0 48.8 515 3-551 8-546 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 4.4E-81 1.5E-85 650.5 48.0 504 13-547 21-535 (536)
3 3r44_A Fatty acyl COA syntheta 100.0 1.2E-80 4.2E-85 643.9 47.9 507 3-549 5-515 (517)
4 1v25_A Long-chain-fatty-acid-C 100.0 3.6E-81 1.2E-85 651.5 43.6 517 9-550 13-539 (541)
5 1mdb_A 2,3-dihydroxybenzoate-A 100.0 2.2E-80 7.4E-85 645.4 49.4 506 11-554 22-538 (539)
6 4fuq_A Malonyl COA synthetase; 100.0 3.9E-80 1.3E-84 637.9 45.5 491 18-548 4-501 (503)
7 3rix_A Luciferase, luciferin 4 100.0 4.5E-81 1.5E-85 652.5 35.7 519 7-556 13-550 (550)
8 3ivr_A Putative long-chain-fat 100.0 3E-80 1E-84 640.9 37.9 501 10-552 2-506 (509)
9 2d1s_A Luciferase, luciferin 4 100.0 6.4E-79 2.2E-83 635.1 47.9 504 14-550 25-546 (548)
10 3o83_A Peptide arylation enzym 100.0 3.5E-80 1.2E-84 644.5 36.1 504 11-549 27-542 (544)
11 3etc_A AMP-binding protein; ad 100.0 1.7E-78 5.7E-83 634.8 47.1 503 14-547 55-579 (580)
12 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.1E-78 2.1E-82 622.5 49.0 481 14-546 2-503 (504)
13 3fce_A D-alanine--poly(phospho 100.0 1.1E-77 3.8E-82 622.2 44.7 496 14-552 1-509 (512)
14 1pg4_A Acetyl-COA synthetase; 100.0 2.7E-77 9.1E-82 634.3 48.0 513 14-548 76-622 (652)
15 3e7w_A D-alanine--poly(phospho 100.0 6.5E-77 2.2E-81 615.9 48.1 494 14-551 1-507 (511)
16 3c5e_A Acyl-coenzyme A synthet 100.0 1.2E-76 4E-81 620.1 50.0 505 9-548 33-563 (570)
17 1amu_A GRSA, gramicidin synthe 100.0 1.4E-77 4.9E-82 626.0 42.8 482 12-545 37-527 (563)
18 3ipl_A 2-succinylbenzoate--COA 100.0 2.3E-77 7.9E-82 618.4 41.8 499 14-549 1-499 (501)
19 3rg2_A Enterobactin synthase c 100.0 1.6E-76 5.4E-81 625.9 48.8 501 10-549 23-536 (617)
20 4gr5_A Non-ribosomal peptide s 100.0 3.3E-78 1.1E-82 633.2 33.7 484 12-544 73-568 (570)
21 1ry2_A Acetyl-coenzyme A synth 100.0 1E-76 3.4E-81 629.9 45.2 514 14-548 82-638 (663)
22 3l8c_A D-alanine--poly(phospho 100.0 1.3E-76 4.4E-81 615.9 43.0 497 12-551 2-516 (521)
23 2v7b_A Benzoate-coenzyme A lig 100.0 5.5E-76 1.9E-80 612.0 44.4 497 14-543 24-528 (529)
24 4dg8_A PA1221; ANL superfamily 100.0 6.1E-76 2.1E-80 618.5 43.6 479 11-548 24-514 (620)
25 3tsy_A Fusion protein 4-coumar 100.0 1.9E-76 6.6E-81 657.1 37.6 517 13-554 60-589 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 6.4E-76 2.2E-80 606.3 28.5 480 7-543 15-504 (505)
27 3ite_A SIDN siderophore synthe 100.0 9.5E-74 3.3E-78 599.6 32.7 499 9-552 15-548 (562)
28 3kxw_A Saframycin MX1 syntheta 100.0 3E-73 1E-77 600.3 33.6 509 11-552 8-572 (590)
29 2vsq_A Surfactin synthetase su 100.0 4.1E-72 1.4E-76 637.3 42.6 493 6-546 456-959 (1304)
30 3gqw_A Fatty acid AMP ligase; 100.0 6.4E-72 2.2E-76 588.9 39.9 506 10-554 17-570 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.1E-59 7.3E-64 482.3 28.5 405 5-442 15-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.2E-53 4.1E-58 419.0 21.6 316 187-549 36-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 2.7E-47 9.1E-52 386.4 25.6 325 185-540 82-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.2E-47 7.6E-52 387.7 20.6 328 185-542 89-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.6E-46 5.3E-51 380.8 24.9 326 185-540 87-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 7.1E-29 2.4E-33 245.3 17.9 234 185-452 88-368 (369)
37 3gxs_A Phenylacetate-coenzyme 99.5 2.6E-14 8.9E-19 113.0 6.5 97 441-539 1-102 (109)
38 3lax_A Phenylacetate-coenzyme 99.5 2.1E-14 7.3E-19 113.8 5.2 97 441-538 1-101 (109)
39 4eql_A 4-substituted benzoates 98.7 1.6E-07 5.4E-12 95.2 13.8 59 391-466 385-447 (581)
40 4b2g_A GH3-1 auxin conjugating 98.7 1.1E-07 3.9E-12 96.3 11.6 63 384-465 392-458 (609)
41 4epl_A Jasmonic acid-amido syn 98.6 1.7E-06 5.7E-11 87.5 16.8 90 384-493 387-488 (581)
42 3qov_A Phenylacetate-coenzyme 92.8 0.95 3.2E-05 44.6 12.4 92 38-130 104-197 (436)
43 2y27_A Phenylacetate-coenzyme 92.8 1.1 3.7E-05 44.2 12.7 90 39-129 109-200 (437)
44 2y4o_A Phenylacetate-coenzyme 92.5 1.2 4.1E-05 44.0 12.6 90 39-129 111-202 (443)
45 1mdb_A 2,3-dihydroxybenzoate-A 81.5 18 0.0006 36.6 13.4 99 27-129 180-290 (539)
46 3hgu_A EHPF; phenazine, antibi 76.5 4.7 0.00016 38.4 6.9 85 38-124 109-218 (369)
47 3ipl_A 2-succinylbenzoate--COA 75.7 16 0.00053 36.5 10.8 97 27-127 161-267 (501)
48 3o83_A Peptide arylation enzym 75.6 13 0.00043 37.7 10.1 97 28-128 190-298 (544)
49 3r44_A Fatty acyl COA syntheta 73.8 16 0.00055 36.6 10.3 85 38-127 188-274 (517)
50 2d1s_A Luciferase, luciferin 4 72.4 12 0.0004 38.0 9.0 97 29-127 192-299 (548)
51 3rix_A Luciferase, luciferin 4 70.2 15 0.00051 37.2 9.2 89 38-127 208-297 (550)
52 3rg2_A Enterobactin synthase c 69.8 55 0.0019 33.6 13.5 98 28-129 183-292 (617)
53 3fce_A D-alanine--poly(phospho 65.7 15 0.0005 36.9 7.9 84 38-124 162-248 (512)
54 3tbh_A O-acetyl serine sulfhyd 65.2 31 0.001 32.3 9.5 65 56-120 62-127 (334)
55 4gs5_A Acyl-COA synthetase (AM 64.8 13 0.00045 35.2 7.0 94 26-125 34-137 (358)
56 3g7s_A Long-chain-fatty-acid-- 63.5 44 0.0015 33.6 11.1 89 38-130 198-287 (549)
57 3kxw_A Saframycin MX1 syntheta 59.4 47 0.0016 33.7 10.6 98 27-127 165-276 (590)
58 1v25_A Long-chain-fatty-acid-C 58.9 35 0.0012 34.4 9.3 90 38-128 194-284 (541)
59 3e7w_A D-alanine--poly(phospho 58.3 24 0.00081 35.3 7.9 86 38-126 161-249 (511)
60 3ni2_A 4-coumarate:COA ligase; 55.9 46 0.0016 33.4 9.6 96 186-289 35-134 (536)
61 3ivr_A Putative long-chain-fat 54.3 62 0.0021 32.1 10.3 85 38-127 178-264 (509)
62 1t5h_X 4-chlorobenzoyl COA lig 51.6 1E+02 0.0035 30.5 11.3 84 206-290 28-117 (504)
63 3vc3_A Beta-cyanoalnine syntha 51.5 51 0.0017 30.9 8.5 69 52-120 74-142 (344)
64 1ry2_A Acetyl-coenzyme A synth 51.0 89 0.003 32.3 11.1 96 186-285 95-195 (663)
65 1amu_A GRSA, gramicidin synthe 49.7 96 0.0033 31.3 10.9 84 206-290 63-150 (563)
66 3etc_A AMP-binding protein; ad 49.4 85 0.0029 31.8 10.5 94 186-284 69-166 (580)
67 3nyq_A Malonyl-COA ligase; A/B 48.4 59 0.002 32.3 8.9 96 27-127 153-259 (505)
68 4fuq_A Malonyl COA synthetase; 47.9 82 0.0028 31.2 9.9 79 207-286 28-110 (503)
69 3t5a_A Long-chain-fatty-acid-- 47.5 1.5E+02 0.0052 28.8 11.9 106 186-293 37-149 (480)
70 3ezx_A MMCP 1, monomethylamine 46.2 1E+02 0.0034 26.5 8.9 90 227-320 91-195 (215)
71 3tsy_A Fusion protein 4-coumar 45.5 57 0.0019 35.7 8.9 101 27-128 223-335 (979)
72 2v7b_A Benzoate-coenzyme A lig 45.5 71 0.0024 31.8 9.1 82 207-289 48-133 (529)
73 1pg4_A Acetyl-COA synthetase; 45.2 1.2E+02 0.0042 31.1 11.0 94 187-284 90-187 (652)
74 4eez_A Alcohol dehydrogenase 1 44.4 62 0.0021 30.1 8.0 78 39-119 136-216 (348)
75 3c5e_A Acyl-coenzyme A synthet 43.4 80 0.0027 31.9 9.1 100 186-290 56-160 (570)
76 4gr5_A Non-ribosomal peptide s 41.1 1.4E+02 0.0048 30.1 10.6 79 207-286 100-182 (570)
77 1z7w_A Cysteine synthase; tran 40.0 1E+02 0.0034 28.4 8.5 64 57-120 58-122 (322)
78 4aec_A Cysteine synthase, mito 39.8 96 0.0033 30.0 8.4 63 57-119 166-229 (430)
79 1ve1_A O-acetylserine sulfhydr 39.8 1.7E+02 0.006 26.5 10.1 64 56-120 51-117 (304)
80 3l8c_A D-alanine--poly(phospho 39.2 1.2E+02 0.0041 30.1 9.6 87 38-125 163-252 (521)
81 2cvi_A 75AA long hypothetical 39.0 57 0.0019 22.8 5.2 47 456-514 15-61 (83)
82 2q3b_A Cysteine synthase A; py 39.0 1.2E+02 0.0041 27.7 8.9 64 56-120 58-122 (313)
83 2egu_A Cysteine synthase; O-ac 38.9 1.3E+02 0.0043 27.5 9.0 64 56-120 56-120 (308)
84 2pqm_A Cysteine synthase; OASS 34.1 1.4E+02 0.0049 27.7 8.6 63 57-120 70-133 (343)
85 4dg8_A PA1221; ANL superfamily 33.3 78 0.0027 32.5 7.1 96 28-127 163-269 (620)
86 3l6b_A Serine racemase; pyrido 33.1 70 0.0024 29.9 6.2 53 71-123 82-134 (346)
87 3tla_A MCCF; serine protease, 32.2 92 0.0032 29.5 6.8 61 59-119 38-117 (371)
88 1h2b_A Alcohol dehydrogenase; 32.1 1.4E+02 0.0048 27.9 8.2 62 55-119 176-239 (359)
89 3ju7_A Putative PLP-dependent 31.4 82 0.0028 29.8 6.5 60 55-117 69-135 (377)
90 3dwg_A Cysteine synthase B; su 31.2 2.1E+02 0.0073 26.2 9.2 64 56-120 64-128 (325)
91 1y7l_A O-acetylserine sulfhydr 31.0 2.3E+02 0.0079 25.8 9.4 64 56-120 53-117 (316)
92 2yxb_A Coenzyme B12-dependent 30.8 1.5E+02 0.0052 23.9 7.1 112 212-325 2-122 (161)
93 3gqw_A Fatty acid AMP ligase; 30.3 1.8E+02 0.0061 29.2 9.3 84 206-290 48-142 (576)
94 2v03_A Cysteine synthase B; py 30.3 2.1E+02 0.0073 25.9 8.9 62 57-119 53-115 (303)
95 3s2e_A Zinc-containing alcohol 30.0 1.3E+02 0.0044 27.8 7.6 78 38-119 138-218 (340)
96 2zbc_A 83AA long hypothetical 29.8 83 0.0028 21.7 4.8 47 456-514 15-61 (83)
97 1eg5_A Aminotransferase; PLP-d 29.7 1.6E+02 0.0055 27.3 8.4 33 62-94 87-119 (384)
98 3ri6_A O-acetylhomoserine sulf 29.6 1.7E+02 0.006 28.1 8.6 59 68-126 100-161 (430)
99 1wy5_A TILS, hypothetical UPF0 29.4 2.7E+02 0.0094 25.3 9.6 72 48-119 7-92 (317)
100 3sr3_A Microcin immunity prote 29.1 1.4E+02 0.0047 27.8 7.4 59 60-119 9-87 (336)
101 3pc3_A CG1753, isoform A; CBS, 29.0 1.7E+02 0.0057 29.3 8.5 61 58-119 106-167 (527)
102 1o58_A O-acetylserine sulfhydr 28.7 2.6E+02 0.009 25.2 9.3 51 70-120 70-120 (303)
103 4h27_A L-serine dehydratase/L- 28.6 1E+02 0.0035 29.0 6.6 58 67-124 95-152 (364)
104 4e5s_A MCCFLIKE protein (BA_56 28.5 1.2E+02 0.0041 28.1 6.9 60 60-119 8-86 (331)
105 3dzz_A Putative pyridoxal 5'-p 27.6 1.7E+02 0.0057 27.4 8.1 55 61-118 106-167 (391)
106 3tqh_A Quinone oxidoreductase; 27.1 1.3E+02 0.0044 27.6 6.9 76 38-118 124-203 (321)
107 3jv7_A ADH-A; dehydrogenase, n 26.5 1.7E+02 0.006 27.0 7.8 78 40-120 143-225 (345)
108 1o69_A Aminotransferase; struc 26.5 1.8E+02 0.0062 27.4 8.1 59 58-119 66-130 (394)
109 3two_A Mannitol dehydrogenase; 26.1 1.7E+02 0.0059 27.0 7.7 75 38-116 148-225 (348)
110 4h1h_A LMO1638 protein; MCCF-l 25.6 1.4E+02 0.0049 27.5 6.8 60 60-119 8-86 (327)
111 3a2k_A TRNA(Ile)-lysidine synt 25.5 2.3E+02 0.008 27.6 8.7 70 51-120 4-87 (464)
112 2cf5_A Atccad5, CAD, cinnamyl 25.2 1.6E+02 0.0053 27.5 7.2 62 55-119 171-233 (357)
113 3ijw_A Aminoglycoside N3-acety 25.1 51 0.0017 29.5 3.4 23 50-72 18-40 (268)
114 3fpc_A NADP-dependent alcohol 24.9 1.4E+02 0.0048 27.7 6.9 76 39-118 139-218 (352)
115 4ej6_A Putative zinc-binding d 24.6 1.8E+02 0.0061 27.3 7.5 59 55-117 174-233 (370)
116 1y80_A Predicted cobalamin bin 24.6 3E+02 0.01 23.2 8.3 83 38-120 55-148 (210)
117 1mdo_A ARNB aminotransferase; 24.5 1.6E+02 0.0055 27.6 7.3 55 59-117 74-133 (393)
118 2jgn_A DBX, DDX3, ATP-dependen 24.4 2.3E+02 0.0077 23.3 7.4 70 48-119 32-104 (185)
119 1zsy_A Mitochondrial 2-enoyl t 24.4 1.9E+02 0.0066 26.8 7.7 79 39-118 139-223 (357)
120 2rkb_A Serine dehydratase-like 23.7 1.4E+02 0.0047 27.4 6.4 60 64-124 54-113 (318)
121 2jtq_A Phage shock protein E; 23.7 1.6E+02 0.0055 20.2 5.5 45 39-90 23-67 (85)
122 2djw_A Probable transcriptiona 23.5 85 0.0029 22.3 3.9 48 456-515 15-62 (92)
123 2nyg_A YOKD protein; PFAM02522 23.4 57 0.0019 29.3 3.4 23 50-72 16-38 (273)
124 4d9i_A Diaminopropionate ammon 23.2 4E+02 0.014 25.2 9.7 57 70-126 117-173 (398)
125 3sma_A FRBF; N-acetyl transfer 23.1 58 0.002 29.4 3.4 23 50-72 25-47 (286)
126 2e7j_A SEP-tRNA:Cys-tRNA synth 23.0 3E+02 0.01 25.3 8.9 55 61-118 90-154 (371)
127 1pl8_A Human sorbitol dehydrog 23.0 2.1E+02 0.0071 26.6 7.6 76 38-118 144-223 (356)
128 3b8x_A WBDK, pyridoxamine 5-ph 22.8 2.6E+02 0.009 26.1 8.5 55 60-118 76-135 (390)
129 3isl_A Purine catabolism prote 22.8 2.6E+02 0.009 26.2 8.6 14 204-217 206-219 (416)
130 3ujp_A Mn transporter subunit; 22.5 1.9E+02 0.0064 26.5 6.9 86 41-128 164-256 (307)
131 3a2b_A Serine palmitoyltransfe 22.1 3.9E+02 0.013 24.9 9.6 55 61-119 124-181 (398)
132 3ss7_X D-serine dehydratase; t 22.0 1.7E+02 0.0057 28.4 6.8 62 67-128 162-223 (442)
133 1uuf_A YAHK, zinc-type alcohol 21.8 1.7E+02 0.006 27.4 6.8 75 40-118 168-245 (369)
134 3aey_A Threonine synthase; PLP 21.3 1.6E+02 0.0056 27.4 6.4 58 67-124 79-137 (351)
135 2z9v_A Aspartate aminotransfer 21.2 2.9E+02 0.0098 25.7 8.4 57 61-118 80-141 (392)
136 1p5j_A L-serine dehydratase; l 21.2 1.6E+02 0.0054 27.8 6.3 56 68-123 96-151 (372)
137 2e18_A NH(3)-dependent NAD(+) 21.0 2E+02 0.0068 25.3 6.7 70 47-119 8-83 (257)
138 1elu_A L-cysteine/L-cystine C- 20.7 2.2E+02 0.0075 26.5 7.4 10 204-213 228-237 (390)
139 4eb5_A Probable cysteine desul 20.7 1.6E+02 0.0055 27.3 6.4 50 69-118 64-119 (382)
140 3ndn_A O-succinylhomoserine su 20.7 3.6E+02 0.012 25.6 9.0 14 202-215 235-248 (414)
141 1yqd_A Sinapyl alcohol dehydro 20.4 2.6E+02 0.009 26.0 7.8 61 55-118 178-239 (366)
142 1toa_A Tromp-1, protein (perip 20.4 2.5E+02 0.0085 25.7 7.3 89 42-130 172-265 (313)
143 3mfq_A TROA, high-affinity zin 20.4 1.7E+02 0.0059 26.3 6.1 86 41-128 137-229 (282)
144 1ofu_X SULA, hypothetical prot 20.3 2.9E+02 0.0098 21.0 7.1 51 53-103 47-99 (119)
145 4a2c_A Galactitol-1-phosphate 20.3 3.2E+02 0.011 25.0 8.3 62 55-120 152-214 (346)
146 2rb4_A ATP-dependent RNA helic 20.1 3.4E+02 0.012 21.8 9.0 69 48-119 21-92 (175)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=8.1e-82 Score=658.03 Aligned_cols=515 Identities=26% Similarity=0.365 Sum_probs=408.1
Q ss_pred CCccCCCCCCCCCHHHHHHHHHHhcCCCCEEEECC--------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCh
Q 045072 3 ELKPCTANSSPLTPLGFLERAATVYGDCPSIIYNN--------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNI 74 (556)
Q Consensus 3 ~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~--------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~ 74 (556)
+.+.+..+.+..|+.++|.++++++|+++|+++.+ +++||+||.++++++|.+|++.|+++||+|+|+++|+
T Consensus 8 ~~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~ 87 (549)
T 3g7s_A 8 KIGFPSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNS 87 (549)
T ss_dssp CCCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSS
T ss_pred ccCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC
Confidence 34455667788999999999999999999999987 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCC
Q 045072 75 PAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDN 154 (556)
Q Consensus 75 ~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (556)
+++++++|||+++|++++|++|.++.+++.+++++++++++|++....+.+........ ...++......
T Consensus 88 ~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------ 157 (549)
T 3g7s_A 88 IDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTG----VERVFVVGGEV------ 157 (549)
T ss_dssp HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSC----CCEEEEETCSS------
T ss_pred HHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCC----CcEEEEeCCCC------
Confidence 99999999999999999999999999999999999999999999988877776655443 33344443211
Q ss_pred CCccccCCCcccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEE
Q 045072 155 KSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLW 234 (556)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (556)
..+.+++..............++++++|+|||||||.||||.++|+++...+......+++.+.|++++
T Consensus 158 -----------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~ 226 (549)
T 3g7s_A 158 -----------NSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVG 226 (549)
T ss_dssp -----------SCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEEC
T ss_pred -----------cCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 234444444333222222233489999999999999999999999999998888888889999999999
Q ss_pred ecChhhhhhchhhhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC----CCCCCCCeEEEEeCC
Q 045072 235 TLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNPVHILTAGA 310 (556)
Q Consensus 235 ~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~l~~v~~~g~ 310 (556)
.+|++|..++...+.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+... ...++++|.+++||+
T Consensus 227 ~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~ 306 (549)
T 3g7s_A 227 CMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAW 306 (549)
T ss_dssp CSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESS
T ss_pred eCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCc
Confidence 9999999998888888999999999999999999999999999999999999999976543 256789999999999
Q ss_pred CCcHHHHHHhHh-----cC---CeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCC
Q 045072 311 PPPAAVLFRTES-----LG---FLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESG 382 (556)
Q Consensus 311 ~~~~~~~~~~~~-----~~---~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~ 382 (556)
++++++.+++.+ ++ +.+++.||+||++.+++..... ......++|.|++++ +++|+|++++
T Consensus 307 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~----------~~~~~~~~G~p~~~~-~~~i~d~~~g 375 (549)
T 3g7s_A 307 PVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL----------RLDKSTTQGVPMSDI-ELKVISLEDG 375 (549)
T ss_dssp CCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGG----------GGGGTTSCCEECTTC-EEEEECSSSC
T ss_pred cCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCcc----------ccCcCCCccccCCCC-EEEEEeCCCC
Confidence 999999988874 45 8999999999998877654321 112346889999999 9999997799
Q ss_pred ceecCCCCeeeEEEEecCCccccccCCCCccccCcC--CCC--ceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHH
Q 045072 383 LSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMK--DDG--WFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVE 458 (556)
Q Consensus 383 ~~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ 458 (556)
.+++.| +.|||+|+|++++.|||++|+.+...|. .+| ||+|||+|++|+||++++.||.||+||++|++|+|.+
T Consensus 376 ~~~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e 453 (549)
T 3g7s_A 376 RELGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE 453 (549)
T ss_dssp CEECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHH
T ss_pred cCCCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHH
Confidence 999998 7899999999999999999999999883 467 9999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccEEEeecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccH
Q 045072 459 VESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKK 538 (556)
Q Consensus 459 ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r 538 (556)
||+.|.++|+|.+++|++.+++..|+.++++|++.++.....+.+++.++++++|+.|++|..++++++||+|++||++|
T Consensus 454 IE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R 533 (549)
T 3g7s_A 454 LEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLR 533 (549)
T ss_dssp HHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC---------
T ss_pred HHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeH
Confidence 99999999999999999999998899999999998774444788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 045072 539 FELREMAKAMGKS 551 (556)
Q Consensus 539 ~~l~~~~~~~~~~ 551 (556)
++|++.+.+....
T Consensus 534 ~~L~~~~~~~~~~ 546 (549)
T 3g7s_A 534 RLLREKEAEGHHH 546 (549)
T ss_dssp -------------
T ss_pred HHHHHHhhccccc
Confidence 9999998876543
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4.4e-81 Score=650.52 Aligned_cols=504 Identities=26% Similarity=0.387 Sum_probs=434.9
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEC--CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 045072 13 PLTPLGFLERAATVYGDCPSIIYN--NLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAI 90 (556)
Q Consensus 13 ~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (556)
..|+.++|.++++++|+++|+++. ++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 489999999999999999999986 588999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCccccccc
Q 045072 91 LNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYES 170 (556)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (556)
++|++|.++.+++.+++++++++++|++....+.+........ ..++.++... .....+++
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--------------~~~~~~~~ 161 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD-----VKVMCVDSAP--------------DGCLHFSE 161 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT-----CEEEESSCCC--------------TTCEETHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC-----ceEEEecCCC--------------CCccCHHH
Confidence 9999999999999999999999999999988777666543321 1233332211 11223333
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhh----hcCCCCCCEEEEecChhhhhhchh
Q 045072 171 LVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLI----DWSIPKQPVYLWTLPMFHANGWSY 246 (556)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~pl~~~~g~~~ 246 (556)
+........ .....+++++++++|||||||.||||.++|+++...+..... .+.+.++|++++.+|++|.+++..
T Consensus 162 ~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~ 240 (536)
T 3ni2_A 162 LTQADENEA-PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNS 240 (536)
T ss_dssp HHTSCGGGC-CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHH
T ss_pred Hhhcccccc-ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHH
Confidence 333222111 122356789999999999999999999999999877655433 356789999999999999999854
Q ss_pred -hhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHHHhH-h
Q 045072 247 -PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLFRTE-S 322 (556)
Q Consensus 247 -~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~~~~-~ 322 (556)
++.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+... ...++++|.+++||+++++++.+++. .
T Consensus 241 ~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 320 (536)
T 3ni2_A 241 IMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAK 320 (536)
T ss_dssp THHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHH
Confidence 6778889999999999999999999999999999999999999998765 56788999999999999999999998 5
Q ss_pred c-CCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCC
Q 045072 323 L-GFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGS 401 (556)
Q Consensus 323 ~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~ 401 (556)
+ ++.+++.||+||++++++.+..... .......+++|.|+++. +++|+|++++.+++.| +.|||+|+|++
T Consensus 321 ~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~v~g~~ 391 (536)
T 3ni2_A 321 FPQARLGQGYGMTEAGPVLAMCLAFAK------EPFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QPGEICIRGDQ 391 (536)
T ss_dssp CTTSEEEEEEECGGGSSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CCEEEEEESTT
T ss_pred CCCCCccccccccccchhhhcccccCC------ccccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--CccEEEEeCcc
Confidence 5 8999999999999877665432111 11123346899999999 9999998889999998 78999999999
Q ss_pred ccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCC
Q 045072 402 MMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEF 481 (556)
Q Consensus 402 ~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~ 481 (556)
++.|||++|+.+...|..+|||+|||+|++++||++++.||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++.
T Consensus 392 v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~ 471 (536)
T 3ni2_A 392 IMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDED 471 (536)
T ss_dssp SCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT
T ss_pred cchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCC
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHH
Q 045072 482 WGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKA 547 (556)
Q Consensus 482 ~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 547 (556)
.|+.++++|+..++.. .+.+++.++++++++.|++|..++++++||+|++||++|++|++++.+
T Consensus 472 ~g~~~~a~vv~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 472 AGEVPVAFVVKSEKSQ--ATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TEEEEEEEEEECTTCC--CCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCceeEEEEEecCCCC--CCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 8999999999877654 678999999999999999999999999999999999999999988764
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.2e-80 Score=643.88 Aligned_cols=507 Identities=30% Similarity=0.429 Sum_probs=433.2
Q ss_pred CCccCCCCCCCCCHHHHHHHHHHhcCCCCEEEECCc--cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHH
Q 045072 3 ELKPCTANSSPLTPLGFLERAATVYGDCPSIIYNNL--IYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEA 80 (556)
Q Consensus 3 ~~~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~--~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~ 80 (556)
|+..........|+.++|+++++.+|+++|+++.++ ++||+||.++++++|.+|++.|+++||+|+++++|+++++++
T Consensus 5 ~~~~~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~ 84 (517)
T 3r44_A 5 HHHHVDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84 (517)
T ss_dssp -------CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred ccccCCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHH
Confidence 455566677889999999999999999999999876 999999999999999999999999999999999999999999
Q ss_pred HHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCcccc
Q 045072 81 HFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTV 160 (556)
Q Consensus 81 ~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (556)
+|||+++|++++|++|.++.+++.+++++++++++|++......+.......... ..++.+..
T Consensus 85 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------------- 147 (517)
T 3r44_A 85 FYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPP---GTVTDWIG-------------- 147 (517)
T ss_dssp HHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCC---TTCCEEEE--------------
T ss_pred HHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCc---cEEEEccC--------------
Confidence 9999999999999999999999999999999999999998877776665443321 11111110
Q ss_pred CCCcccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhh
Q 045072 161 DSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFH 240 (556)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 240 (556)
...+.+.+....... ......++++++++|||||||.||||.++|+++...+......+++.++|++++.+|++|
T Consensus 148 ----~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~ 222 (517)
T 3r44_A 148 ----ADSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFH 222 (517)
T ss_dssp ----HHHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTS
T ss_pred ----cccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHH
Confidence 012223332222211 122356789999999999999999999999999998888888889999999999999999
Q ss_pred hhhchhhhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHH
Q 045072 241 ANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLF 318 (556)
Q Consensus 241 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~ 318 (556)
..++...+.+++.|+++++.+.+++..+++.++++++|+++++|+++..+.+... ...++++|.+++||+++++++.+
T Consensus 223 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~ 302 (517)
T 3r44_A 223 VAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIK 302 (517)
T ss_dssp HHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHH
Confidence 9999886666669999999999999999999999999999999999999987654 45678999999999999999999
Q ss_pred HhHhcCCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEe
Q 045072 319 RTESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFR 398 (556)
Q Consensus 319 ~~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~ 398 (556)
++...++.+++.||+||+++.++.... .......+++|.|.++. +++|+|+ ++.+++.+ .|||+|+
T Consensus 303 ~~~~~~~~~~~~YG~TE~~~~~~~~~~---------~~~~~~~~~~G~~~~~~-~~~i~d~-~~~~~~~g---~GEl~v~ 368 (517)
T 3r44_A 303 IYAAKNIEVVQGYALTESCGGGTLLLS---------EDALRKAGSAGRATMFT-DVAVRGD-DGVIREHG---EGEVVIK 368 (517)
T ss_dssp HHHHTTCEEEEEEECGGGTTCEEEECG---------GGTTTTTTCCBEECTTE-EEEEECT-TSCEESSE---EEEEEEE
T ss_pred HHHhcCCcEEEeecccccccceeecCC---------ccccccCCCCCcCCCCe-EEEEECC-CCCCCCCC---CeEEEEe
Confidence 998779999999999999887665421 11123456889999999 9999997 78887775 5999999
Q ss_pred cCCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeec
Q 045072 399 GGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARP 478 (556)
Q Consensus 399 ~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~ 478 (556)
|++++.|||++|+.+...|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||+.|.++|+|.+++|++.+
T Consensus 369 g~~v~~GY~~~p~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~ 447 (517)
T 3r44_A 369 SDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLP 447 (517)
T ss_dssp ETTSCSEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CcchhhhhCCChhhhHhhhc-CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEecc
Confidence 99999999999999999997 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhc
Q 045072 479 DEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMG 549 (556)
Q Consensus 479 ~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~ 549 (556)
++..|+.++++| ..++.. .+.+++.++++++|+.|++|..++++++||+|++||++|++|+++|.+..
T Consensus 448 ~~~~g~~~~a~v-~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 448 DEKWGEIAAAIV-VADQNE--VSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp ETTTEEEEEEEE-EECTTT--CCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred ccccCceEEEEE-ECCCCC--CCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 998888888887 444433 67899999999999999999999999999999999999999999997754
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.6e-81 Score=651.49 Aligned_cols=517 Identities=32% Similarity=0.498 Sum_probs=400.1
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCEEEE----CCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHh
Q 045072 9 ANSSPLTPLGFLERAATVYGDCPSIIY----NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAI 84 (556)
Q Consensus 9 ~~~~~~t~~~~l~~~~~~~p~~~a~~~----~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~ 84 (556)
....+.|+.++|+++++.+|+++|+++ .++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||
T Consensus 13 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 13 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp BCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 344568999999999999999999995 4578999999999999999999999999999999999999999999999
Q ss_pred hhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCc
Q 045072 85 PFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNF 164 (556)
Q Consensus 85 ~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (556)
+++|++++|++|.++.+++.+++++++++++|++.+....+.......+. ...++.+++... ..
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------~~ 156 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKT---VQHFVVMDEKAP-------------EG 156 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSS---CCEEEESSSCCC-------------TT
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCC---ccEEEEecCCCC-------------cc
Confidence 99999999999999999999999999999999998887766665444331 223333322110 01
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhh--hhhhcCCCCCCEEEEecChhhhh
Q 045072 165 CCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVD--SLIDWSIPKQPVYLWTLPMFHAN 242 (556)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~pl~~~~ 242 (556)
...+++++...... ...+++++++++|||||||.||||+++|+++...... ....+++.++|++++.+|++|.+
T Consensus 157 ~~~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 157 YLAYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp CEEHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHH
T ss_pred cccHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhh
Confidence 12344444333221 2345689999999999999999999999999776554 23456788999999999999999
Q ss_pred hchhhhHhHhcCcEeEEecC-CCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHHH
Q 045072 243 GWSYPWGMAAVGGTNVCLRK-FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLFR 319 (556)
Q Consensus 243 g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~~ 319 (556)
++...+.++..|+++++.+. +++..+++.++++++|+++++|+++..+.+... ...++++|.+++||+++++++.++
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~ 312 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIAR 312 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHH
Confidence 98777888999999998864 799999999999999999999999999976543 456789999999999999999999
Q ss_pred hHhcCCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEec
Q 045072 320 TESLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRG 399 (556)
Q Consensus 320 ~~~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~ 399 (556)
++.+++.+++.||+||++.+++.......+.............++|.|++++ +++|+|+ ++.+++.++++.|||+|+|
T Consensus 313 ~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~~~~~~GEl~v~g 390 (541)
T 1v25_A 313 FERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADE-EGRPVPKDGKALGEVQLKG 390 (541)
T ss_dssp HHHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECT-TSCBCCSSSCCCEEEEEES
T ss_pred HHHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECC-CCCCCCCCCCcceEEEEeC
Confidence 8777999999999999988776654332222222222223457899999999 9999997 6888885433579999999
Q ss_pred CCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecC
Q 045072 400 GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPD 479 (556)
Q Consensus 400 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~ 479 (556)
|+++.|||++|+.+...|..+|||+|||+|++|+||++++.||.+|+||.+|++|+|.+||+.|.+||+|.+++|++.++
T Consensus 391 ~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 470 (541)
T 1v25_A 391 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPH 470 (541)
T ss_dssp TTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEEC
T ss_pred cchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEEEEecccccCCCCHHHHHHHHHh-cCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhcc
Q 045072 480 EFWGETPCAFLSLKAELEKKPTEKEIIEYCRA-RLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGK 550 (556)
Q Consensus 480 ~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 550 (556)
+.+|+.++++|+.. +.. .+.+++.+++++ +|+.|++|..++++++||+|++||++|++|++++.+.+.
T Consensus 471 ~~~~~~~~a~vv~~-~~~--~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 539 (541)
T 1v25_A 471 PKWQERPLAVVVPR-GEK--PTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNYYG 539 (541)
T ss_dssp SSSSEEEEECC----------------------CCCTTTSCSBC--------------CCTTHHHHSTTSSC
T ss_pred CCcCceEEEEEEEC-CCC--CCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHhhC
Confidence 98899999998876 222 466789999998 899999999999999999999999999999998866543
No 5
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=2.2e-80 Score=645.36 Aligned_cols=506 Identities=24% Similarity=0.335 Sum_probs=431.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 045072 11 SSPLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAI 90 (556)
Q Consensus 11 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (556)
++..|+.++|+++++++|+++|+++.++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHhccCCeEEEEeccch-----hhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcc
Q 045072 91 LNNINTRLDARTISVLLQHSESKLVLVDYQSR-----NLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFC 165 (556)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (556)
++|++|.++.+++.+++++++++++|++++.. ..........+. ...++..++..
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----------------- 161 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPT---LKNIIVAGEAE----------------- 161 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTT---CCCEEEESCCT-----------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCC---ccEEEEcCCcc-----------------
Confidence 99999999999999999999999999987642 222233233221 23333332211
Q ss_pred cccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhch
Q 045072 166 CTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWS 245 (556)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~ 245 (556)
.+.++....... .......++++++++|||||||.||||.++|+++...+......+++.++|++++.+|++|.+++.
T Consensus 162 -~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (539)
T 1mdb_A 162 -EFLPLEDLHTEP-VKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLS 239 (539)
T ss_dssp -TSEEGGGCCCCC-CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHH
T ss_pred -chhhhhhccccc-cccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhh
Confidence 112222111111 111234678999999999999999999999999988888777778899999999999999999986
Q ss_pred h--hhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHHHhH
Q 045072 246 Y--PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLFRTE 321 (556)
Q Consensus 246 ~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~~~~ 321 (556)
. ++.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+... ...++++|.+++||+++++++.+++.
T Consensus 240 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~ 319 (539)
T 1mdb_A 240 SPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319 (539)
T ss_dssp SSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHH
T ss_pred HHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHH
Confidence 4 7888999999999988999999999999999999999999999976543 45788999999999999999999887
Q ss_pred -hcCCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecC
Q 045072 322 -SLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGG 400 (556)
Q Consensus 322 -~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~ 400 (556)
.+++.+++.||+||++..+ .... ........++|.|+++..+++|+|+ ++.+++.| +.|||+|+||
T Consensus 320 ~~~~~~~~~~YG~TE~~~~~-~~~~---------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~~~g--~~GEl~v~g~ 386 (539)
T 1mdb_A 320 AVFGCTLQQVFGMAEGLVNY-TRLD---------DPEEIIVNTQGKPMSPYDESRVWDD-HDRDVKPG--ETGHLLTRGP 386 (539)
T ss_dssp HHTCSEEEEEEECTTSCEEE-CCTT---------SCHHHHHHCCCEESSTTCEEEEECT-TSCBCCTT--CCEEEEEECT
T ss_pred HHhCCcEEEEEcCCCCcccc-cCCC---------CcHHhcCCCCCcccCCCceEEEECC-CCCCCcCC--CcceEEeeCc
Confidence 5799999999999965322 2110 0111234688999976658999997 78999988 7899999999
Q ss_pred CccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCC
Q 045072 401 SMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDE 480 (556)
Q Consensus 401 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~ 480 (556)
++++|||++|+.+...|..+|||+|||+|++|+||++++.||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++
T Consensus 387 ~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 466 (539)
T 1mdb_A 387 YTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQ 466 (539)
T ss_dssp TSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEET
T ss_pred ccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEecccc
Confidence 99999999999999999879999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCeeeEEEEEecccccCCCCHHHHHHHHHhc-CCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhcccccc
Q 045072 481 FWGETPCAFLSLKAELEKKPTEKEIIEYCRAR-LPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKSKVS 554 (556)
Q Consensus 481 ~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~-l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~~~~~~ 554 (556)
..|+.++++|+..+. ..+.+++.++++++ ++.|++|..++++++||+|++||++|++|++++.+.+..-|.
T Consensus 467 ~~g~~~~a~vv~~~~---~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~~y~ 538 (539)
T 1mdb_A 467 FLGERSCVFIIPRDE---APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAGFK 538 (539)
T ss_dssp TTEEEEEEEEEESSS---CCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHTC--
T ss_pred ccCceEEEEEEECCC---CCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhcccc
Confidence 889999999987742 25789999999998 999999999999999999999999999999999998877664
No 6
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=3.9e-80 Score=637.89 Aligned_cols=491 Identities=23% Similarity=0.345 Sum_probs=423.8
Q ss_pred HHHHHHHHhcCCCCEEEE---CCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEecc
Q 045072 18 GFLERAATVYGDCPSIIY---NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNI 94 (556)
Q Consensus 18 ~~l~~~~~~~p~~~a~~~---~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 94 (556)
++|.+.++++|+++++.. .++++||+||.++++++|.+|+++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 578899999999999984 56899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCccccccccccc
Q 045072 95 NTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVTK 174 (556)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (556)
+|.++.+++.+++++++++++|++.+..+.+........ ..+..+..... ..+.+....
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----------------~~~~~~~~~ 142 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-----ATVETLGPDGR----------------GSLTDAAAG 142 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT-----CEEEECCTTSC----------------SHHHHHHHT
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC-----ceEEEecCCcc----------------cccchhhhc
Confidence 999999999999999999999999877665554433321 12222221110 111111111
Q ss_pred CCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhchh-hhHhHhc
Q 045072 175 GDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSY-PWGMAAV 253 (556)
Q Consensus 175 ~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~-~~~~~~~ 253 (556)
.... .......++++++++|||||||.||||.++|+++..+.......+++.++|++++.+|++|.+|+.. .+.++..
T Consensus 143 ~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~ 221 (503)
T 4fuq_A 143 ASEA-FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFA 221 (503)
T ss_dssp SCSC-CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHT
T ss_pred CCCC-cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHh
Confidence 1111 1112356789999999999999999999999999998888888889999999999999999999765 6778889
Q ss_pred CcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHHHhH-hcCCeEEec
Q 045072 254 GGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLFRTE-SLGFLVSHG 330 (556)
Q Consensus 254 g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~~~~-~~~~~l~~~ 330 (556)
|+++++.+.+++..+++.++ ++|+++++|+++..+.+... ...++++|.+++||+++++++.+++. .+++.+++.
T Consensus 222 g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 299 (503)
T 4fuq_A 222 RGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGHAVLER 299 (503)
T ss_dssp TCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEEC
T ss_pred CCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccce
Confidence 99999999999999999998 89999999999999998765 45678999999999999999999988 569999999
Q ss_pred ccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccCCC
Q 045072 331 YGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDP 410 (556)
Q Consensus 331 yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~~~ 410 (556)
||+||++..+.... ......+++|.|++++ +++|+|++++.+++.| +.|||+|+|+++++|||++|
T Consensus 300 YG~TE~~~~~~~~~-----------~~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~~ 365 (503)
T 4fuq_A 300 YGMTETNMNTSNPY-----------DGDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWRMP 365 (503)
T ss_dssp CEETTTEECBCCCS-----------SSCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTTCH
T ss_pred EcccccCcccccCC-----------CCCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcCCh
Confidence 99999986643211 1122346789999999 9999997799999998 78999999999999999999
Q ss_pred CccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCeeeEEEE
Q 045072 411 NGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFL 490 (556)
Q Consensus 411 ~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v 490 (556)
+.+...|..+|||+|||+|++++||++++.||.||+||++|++|+|.+||+.|.++|+|.+++|++.+++..|+.++++|
T Consensus 366 ~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v 445 (503)
T 4fuq_A 366 EKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVV 445 (503)
T ss_dssp HHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEE
Confidence 99999999899999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHh
Q 045072 491 SLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAM 548 (556)
Q Consensus 491 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~ 548 (556)
+..++.. .+.+++.++++++|+.|++|..++++++||+|++||++|++|+++|.+.
T Consensus 446 ~~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 446 VRDKGAT--IDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EECTTCC--CCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EeCCCCC--CCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 9887655 6789999999999999999999999999999999999999999998654
No 7
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.5e-81 Score=652.54 Aligned_cols=519 Identities=23% Similarity=0.327 Sum_probs=336.3
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCEEE---E--CCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHH
Q 045072 7 CTANSSPLTPLGFLERAATVYGDCPSII---Y--NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAH 81 (556)
Q Consensus 7 ~~~~~~~~t~~~~l~~~~~~~p~~~a~~---~--~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~ 81 (556)
...+.++.|+.++|.++++++|+++|++ + .++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 92 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPV 92 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHH
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHH
Confidence 3456678899999999999999999976 3 3578999999999999999999999999999999999999999999
Q ss_pred HHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccC
Q 045072 82 FAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVD 161 (556)
Q Consensus 82 lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (556)
|||+++|++++|++|.++.+++.+++++++++++|++.+....+.......+. ...++..+.....
T Consensus 93 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----------- 158 (550)
T 3rix_A 93 LGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPI---IQKIIIMDSKTDY----------- 158 (550)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTT---CCEEEETTCSSCB-----------
T ss_pred HHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCC---cceEEEEcCCccc-----------
Confidence 99999999999999999999999999999999999999988877776665542 2333333322110
Q ss_pred CCcccccccccccCCC------CCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhh---cCCCCCCEE
Q 045072 162 SNFCCTYESLVTKGDP------NFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLID---WSIPKQPVY 232 (556)
Q Consensus 162 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~---~~~~~~~~~ 232 (556)
.....+.+++..... ...+.....++++++++|||||||.||||.++|+++.......... +++.+++++
T Consensus 159 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (550)
T 3rix_A 159 -QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAI 237 (550)
T ss_dssp -TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEE
T ss_pred -cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEE
Confidence 111233333322111 1111112345789999999999999999999999998776655543 467889999
Q ss_pred EEecChhhhhhchhhhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCC
Q 045072 233 LWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGA 310 (556)
Q Consensus 233 ~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~ 310 (556)
++.+|++|.+++...+.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+... ...++++|.+++||+
T Consensus 238 l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 238 LSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp EECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred EEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 999999999999888889999999999999999999999999999999999999999988765 456889999999999
Q ss_pred CCcHHHHHHhH-hcCCe-EEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCC
Q 045072 311 PPPAAVLFRTE-SLGFL-VSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHD 388 (556)
Q Consensus 311 ~~~~~~~~~~~-~~~~~-l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~ 388 (556)
++++++.+++. .++.. +++.||+||+++.++..... ....+++|.|.+++ +++|+|++++.+++.|
T Consensus 318 ~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~~~i~d~~~~~~~~~g 385 (550)
T 3rix_A 318 PLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVVDLDTGKTLGVN 385 (550)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTEEEEECTTC-EEEEECTTTCCBCCTT
T ss_pred CCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC-----------CCCCCCcccccCCc-EEEEEeCCCCcCCCCC
Confidence 99999999998 56764 89999999998877654321 12346889999999 9999998889999998
Q ss_pred CCeeeEEEEecCCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCC
Q 045072 389 GASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPA 468 (556)
Q Consensus 389 ~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~ 468 (556)
+.|||+|+|++++.|||++|+.+...|..+|||+|||+|++++||++++.||.+|+||.+|++|+|.+||+.|.++|+
T Consensus 386 --~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~ 463 (550)
T 3rix_A 386 --QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPN 463 (550)
T ss_dssp --CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----------------------------
T ss_pred --CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCC
Confidence 789999999999999999999999989779999999999999999999999999999999999999999999999999
Q ss_pred ccccEEEeecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccc-eeEEecCCCCCCCCCccHHHHHHHHHH
Q 045072 469 VNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPK-TVVFKEELPKTSTGKIKKFELREMAKA 547 (556)
Q Consensus 469 i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~-~~~~v~~lP~t~~GKv~r~~l~~~~~~ 547 (556)
|.+++|++.+++..|+.++++|+..++.. .+.+++.+++++++++++.|. .++++++||+|++||++|++|++++.+
T Consensus 464 V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 464 IFDAGVAGLPDDDAGELPAAVVVLEHGKT--MTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceEEEEEeecCCCCceEEEEEEecCCCC--CCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHh
Confidence 99999999999988999999998877654 567889999999999886554 699999999999999999999999988
Q ss_pred hccccccCC
Q 045072 548 MGKSKVSRM 556 (556)
Q Consensus 548 ~~~~~~~~~ 556 (556)
......++|
T Consensus 542 ~~~~~~~~l 550 (550)
T 3rix_A 542 AKKGGKSKL 550 (550)
T ss_dssp ---------
T ss_pred hccccccCC
Confidence 777666554
No 8
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3e-80 Score=640.93 Aligned_cols=501 Identities=25% Similarity=0.393 Sum_probs=335.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccc
Q 045072 10 NSSPLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGA 89 (556)
Q Consensus 10 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (556)
.+.+.|+.++|+++++++||++|+++.++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcccccc
Q 045072 90 ILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYE 169 (556)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (556)
+++|++|.++.+++.+++++++++++|++.+....+......... ...++..++.. ..+.
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----------------~~~~ 141 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGG---VKKAYAIGDGS-----------------GPFA 141 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSS---CCEEEESSCCC-----------------SSCE
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCC---ceEEEEcCCCC-----------------cChh
Confidence 999999999999999999999999999999887765555444332 23333333211 1222
Q ss_pred cccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhchhhhH
Q 045072 170 SLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWG 249 (556)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~ 249 (556)
++...............++++++++|||||||.||||.++|+++..........+++.++|++++.+|++|.+++...+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 221 (509)
T 3ivr_A 142 PFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT 221 (509)
T ss_dssp EGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHH
Confidence 22221111111223456789999999999999999999999999998888888889999999999999999999988888
Q ss_pred hHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCCCCCCCCCeEEEEeCCCCcHHHHHHhH-hc-CCeE
Q 045072 250 MAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTE-SL-GFLV 327 (556)
Q Consensus 250 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~l~~v~~~g~~~~~~~~~~~~-~~-~~~l 327 (556)
++..+++.++...+++..+++.++++++|+++++|+++..+.+......++++|.++.+|++ +..+.+. .+ ++.+
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~ 298 (509)
T 3ivr_A 222 LQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTP---ETIERFEATCPNATF 298 (509)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEE
T ss_pred HHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCCh---HHHHHHHHhcCCCeE
Confidence 78888888877789999999999999999999999999999887766778899999999987 6666666 45 8999
Q ss_pred EecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCcccccc
Q 045072 328 SHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYL 407 (556)
Q Consensus 328 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~ 407 (556)
++.||+||++++++...... ....+|.|++++ +++|+|+ ++.+++.| +.|||+|+|++++.||+
T Consensus 299 ~~~YG~TE~~~~~~~~~~~~------------~~~~~G~p~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g~~~~~gY~ 362 (509)
T 3ivr_A 299 WATFGQSETSGLSTFAPYRD------------RPKSAGRPLFWR-TVAVVDA-EDRPLPPG--EVGEIVLRGPTVFKGYW 362 (509)
T ss_dssp EEEEEEGGGTEEEEEEEGGG------------STTSCCEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCEET
T ss_pred EcccCccccccccccCcccc------------CCCcccccCCCc-EEEEECC-CCCCCCCC--CceEEEEecCCcccccc
Confidence 99999999988766543211 123489999999 9999998 68999998 78999999999999999
Q ss_pred CCCCccccCcCCCCceecCceEEEecCCcEEEEccC--CCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCee
Q 045072 408 KDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRS--KDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGET 485 (556)
Q Consensus 408 ~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~--~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~ 485 (556)
++|+.+...|. +|||+|||+|++++||++++.||. +|+||++|++|+|.+||+.|.++|+|.+++|++.+++.+|+.
T Consensus 363 ~~~~~t~~~f~-~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~ 441 (509)
T 3ivr_A 363 NNAAATQHAFR-NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEA 441 (509)
T ss_dssp TCHHHHHHHTG-GGSEEEEEEEEECTTSCEEEEEEC--------------------------------------------
T ss_pred CCHHHhHHHhh-cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcE
Confidence 99999999998 899999999999999999999999 999999999999999999999999999999999999988999
Q ss_pred eEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhcccc
Q 045072 486 PCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKSK 552 (556)
Q Consensus 486 ~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~~~~ 552 (556)
++++|+..++.. .+.+++.++++++|+.|++|..++++++||+|++||++|++|++++.+....+
T Consensus 442 ~~a~v~~~~~~~--~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 442 IKAVCVCKPGES--IAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEEEeCCCCC--CCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 999998877654 56789999999999999999999999999999999999999999998876654
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=6.4e-79 Score=635.09 Aligned_cols=504 Identities=23% Similarity=0.309 Sum_probs=429.4
Q ss_pred CCHHH-HHHHHHHhcCCCCEEEE--CCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 045072 14 LTPLG-FLERAATVYGDCPSIIY--NNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAI 90 (556)
Q Consensus 14 ~t~~~-~l~~~~~~~p~~~a~~~--~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (556)
.|+.+ +|.++++++ +++|+++ .++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47888 898999999 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCccccccc
Q 045072 91 LNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYES 170 (556)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (556)
++|++|.++.+++.+++++++++++|++.+....+.......+. ...++.+++... ......+++
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------------~~~~~~~~~ 168 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTT---IKTIVILDSKVD------------YRGYQCLDT 168 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTT---CCEEEETTCSSC------------BTTBCBHHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCC---CCEEEEeCCccc------------ccccccHHH
Confidence 99999999999999999999999999999887766655443321 123333322110 001123444
Q ss_pred ccccCCCC-CCCCCCC-----CCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhh---cCCCCCCEEEEecChhhh
Q 045072 171 LVTKGDPN-FKWIRPQ-----NEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLID---WSIPKQPVYLWTLPMFHA 241 (556)
Q Consensus 171 ~~~~~~~~-~~~~~~~-----~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~~pl~~~ 241 (556)
++...... ....... .++++++++|||||||.||||.++|+++.......... +++.++|++++.+|++|.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~ 248 (548)
T 2d1s_A 169 FIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248 (548)
T ss_dssp HHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSH
T ss_pred HHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHH
Confidence 43332111 1110101 23899999999999999999999999998877666555 678899999999999999
Q ss_pred hhchhh-hHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHH
Q 045072 242 NGWSYP-WGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLF 318 (556)
Q Consensus 242 ~g~~~~-~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~ 318 (556)
+++... +.++ .|+++++.+.+++..+++.++++++|+++++|+++..+.+... ...++++|.+++||+++++++.+
T Consensus 249 ~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~ 327 (548)
T 2d1s_A 249 FGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGE 327 (548)
T ss_dssp HHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHH
Confidence 998764 4555 9999999988999999999999999999999999999987654 45688999999999999999999
Q ss_pred HhH-hc-CCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEE
Q 045072 319 RTE-SL-GFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIV 396 (556)
Q Consensus 319 ~~~-~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~ 396 (556)
++. .+ ++.+++.||+||++.+++.... .....+++|.|.++. +++|+|++++.+++.| +.|||+
T Consensus 328 ~~~~~~~~~~i~~~YG~TE~~~~~~~~~~-----------~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl~ 393 (548)
T 2d1s_A 328 AVARRFNLPGVRQGYGLTETTSAIIITPE-----------GDDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEVC 393 (548)
T ss_dssp HHHHHTTCSCCEEEEECGGGSSEEEECCT-----------TCCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEEE
T ss_pred HHHHHcCCCceeeccccccccceeeecCc-----------ccCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEEE
Confidence 988 45 6889999999999877655321 012346899999999 9999997789999988 689999
Q ss_pred EecCCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEe
Q 045072 397 FRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVA 476 (556)
Q Consensus 397 i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~ 476 (556)
++|++++.|||++|+.+...|..+|||+|||+|++|+||++++.||.+|+||.+|++|+|.+||+.|.+||+|.+++|++
T Consensus 394 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~ 473 (548)
T 2d1s_A 394 VKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAG 473 (548)
T ss_dssp EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEE
T ss_pred ECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEE
Confidence 99999999999999999888977999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccc-eeEEecCCCCCCCCCccHHHHHHHHHHhcc
Q 045072 477 RPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPK-TVVFKEELPKTSTGKIKKFELREMAKAMGK 550 (556)
Q Consensus 477 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~-~~~~v~~lP~t~~GKv~r~~l~~~~~~~~~ 550 (556)
.+++..|+.++++|++.++.. .+.+++.++++++++.|+.|. .++++++||+|++||++|++|++++.+.++
T Consensus 474 ~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~ 546 (548)
T 2d1s_A 474 VPDPVAGELPGAVVVLESGKN--MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVA 546 (548)
T ss_dssp EEETTTEEEEEEEEEECTTCC--CCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC-
T ss_pred EEcCCCCeeeEEEEEEcCCCC--CCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhh
Confidence 999888999999999876644 678999999999999999999 999999999999999999999999876554
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.5e-80 Score=644.53 Aligned_cols=504 Identities=20% Similarity=0.279 Sum_probs=335.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 045072 11 SSPLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAI 90 (556)
Q Consensus 11 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (556)
+.+.|+.++|.++++++|+++|+++.++++||+||.++++++|.+|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHhccCCeEEEEeccch-----hhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcc
Q 045072 91 LNNINTRLDARTISVLLQHSESKLVLVDYQSR-----NLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFC 165 (556)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (556)
++|+++.++.+++.+++++++++++|++.... ............ ...++....... .
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------------~ 168 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLS---PEIILMLNHQAT---------------D 168 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCC---CSEEEEETCCTT---------------S
T ss_pred EecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccC---cceEEEecCCcc---------------c
Confidence 99999999999999999999999999988654 223333222221 222333322210 0
Q ss_pred cccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhch
Q 045072 166 CTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWS 245 (556)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~ 245 (556)
..+.++............+..++++++++|||||||.||||+++|+++...+......+++.++|++++.+|++|.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 248 (544)
T 3o83_A 169 FGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLS 248 (544)
T ss_dssp EEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH
T ss_pred cchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecc
Confidence 11222222222222222335678999999999999999999999999999888888888999999999999999998876
Q ss_pred h--hhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHHHhH
Q 045072 246 Y--PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLFRTE 321 (556)
Q Consensus 246 ~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~~~~ 321 (556)
. ++.++..|+++++.+.+++..+++.++++++|+++++|+++..+++... ...++++|.+++||+++++++.+++.
T Consensus 249 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~ 328 (544)
T 3o83_A 249 SPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVP 328 (544)
T ss_dssp SSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHH
T ss_pred hHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHH
Confidence 4 7788899999999999999999999999999999999999999987654 34577999999999999999999988
Q ss_pred -hcCCeEEecccccccccceeeccccccccCCChhhhccccccCcccc-ceeeeeEEecCCCCceecCCCCeeeEEEEec
Q 045072 322 -SLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRT-VCFTEIDVIDSESGLSVSHDGASLGEIVFRG 399 (556)
Q Consensus 322 -~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~ 399 (556)
.+++.+++.||+||++..+.... ........++|.|+ ++. +++|+|+ ++.+++.| +.|||+|+|
T Consensus 329 ~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~-~~~~~~~g--~~GEl~v~g 394 (544)
T 3o83_A 329 EVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDE-QYREVPEG--EIGMLATRG 394 (544)
T ss_dssp HHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECT-TSCBCCTT--CCEEEEEEC
T ss_pred HHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECC-CCCCCCCC--CeeEEEEec
Confidence 55999999999999875443221 11122345789996 666 9999996 89999998 789999999
Q ss_pred CCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecC
Q 045072 400 GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPD 479 (556)
Q Consensus 400 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~ 479 (556)
|+++.||+++|+.+...|..+|||+|||+|++++||++++.||.||+||++|++|+|.+||+.|.++|+|.+++|++.++
T Consensus 395 ~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 474 (544)
T 3o83_A 395 PYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVD 474 (544)
T ss_dssp TTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----------------------------------
T ss_pred CCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEEEEecccccCCCCHHHHHHHHHh-cCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhc
Q 045072 480 EFWGETPCAFLSLKAELEKKPTEKEIIEYCRA-RLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMG 549 (556)
Q Consensus 480 ~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~ 549 (556)
+..|+.++++|+..+.. .+.+++.+++++ +++.|++|..++++++||+|++||++|++|++++.+..
T Consensus 475 ~~~g~~~~a~vv~~~~~---~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 475 EQFGEKSCAFIVSRNPE---LKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCCCceEEEEEEeCCCC---CCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 98899999999876632 466788899988 79999999999999999999999999999999987643
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.7e-78 Score=634.78 Aligned_cols=503 Identities=21% Similarity=0.277 Sum_probs=408.6
Q ss_pred CCHH-HHHHHHHHhcCCCCEEEEC-----CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhc
Q 045072 14 LTPL-GFLERAATVYGDCPSIIYN-----NLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFT 87 (556)
Q Consensus 14 ~t~~-~~l~~~~~~~p~~~a~~~~-----~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~ 87 (556)
.++. ++|+++++.+|+++|+++. ++++||+||.++++++|.+|+++|+++||+|+|+++|++++++++|||+++
T Consensus 55 ~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 55 FNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp CCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 3444 9999999999999999973 368999999999999999999999999999999999999999999999999
Q ss_pred cceEeccCCCCCHHHHHHHHhccCCeEEEEeccch--hhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcc
Q 045072 88 GAILNNINTRLDARTISVLLQHSESKLVLVDYQSR--NLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFC 165 (556)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (556)
|++++|++|.++.+++.+++++++++++|++.+.. ..+.......+.. ...++.++.... ...
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------------~~~ 199 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDI--PLKKAKVGGDVL-------------EGW 199 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSC--CCEEEEESSSCC-------------TTC
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCc--ceEEEEeCCccc-------------ccc
Confidence 99999999999999999999999999999988765 5555554433321 123344432210 112
Q ss_pred cccccccccCCCCCCCC---CCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhh
Q 045072 166 CTYESLVTKGDPNFKWI---RPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHAN 242 (556)
Q Consensus 166 ~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 242 (556)
..+.+.+.........+ ....++++++++|||||||.||+|.++|.+++..........++.+++++++..|++|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (580)
T 3etc_A 200 IDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGK 279 (580)
T ss_dssp EEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTH
T ss_pred ccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHH
Confidence 34444444433322222 235678999999999999999999999999887776666667889999999999998887
Q ss_pred hchh-hhHhHhcCcEeEEe--cCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC-CCCCCCCeEEEEeCCCCcHHHHH
Q 045072 243 GWSY-PWGMAAVGGTNVCL--RKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR-SEPLRNPVHILTAGAPPPAAVLF 318 (556)
Q Consensus 243 g~~~-~~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-~~~l~~l~~v~~~g~~~~~~~~~ 318 (556)
++.. ++.++..|+++++. ..+++..+++.++++++|+++++|++++.+.+... ...++++|.+++||+++++++.+
T Consensus 280 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 359 (580)
T 3etc_A 280 CVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFN 359 (580)
T ss_dssp HHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHH
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHH
Confidence 7654 67778888888877 46899999999999999999999999999987643 55678999999999999999999
Q ss_pred HhH-hcCCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEE
Q 045072 319 RTE-SLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVF 397 (556)
Q Consensus 319 ~~~-~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i 397 (556)
++. .+++.+++.||+||++..++..... ....+++|.|.+++ +++|+|+ +|.+++.| +.|||+|
T Consensus 360 ~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~-~g~~~~~g--~~GEl~v 424 (580)
T 3etc_A 360 RFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDR-DGRLCEVG--EEGEIVI 424 (580)
T ss_dssp HHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEE
T ss_pred HHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECC-CCCCCCCC--CceEEEE
Confidence 988 5699999999999998766543211 12346899999999 9999998 69999988 6899999
Q ss_pred ec-----CCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCcccc
Q 045072 398 RG-----GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEA 472 (556)
Q Consensus 398 ~~-----~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~ 472 (556)
+| ++++.||+++|+.+...|. +|||+|||+|++|+||++++.||.||+||.+|++|+|.+||++|.++|+|.++
T Consensus 425 ~~~~g~~~~~~~gY~~~p~~t~~~f~-~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a 503 (580)
T 3etc_A 425 NTMEGKPVGLFVHYGKDPERTEETWH-DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLEC 503 (580)
T ss_dssp ECTTCCCTTCCCEETTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEE
T ss_pred ecCCCCCCeeeccccCCHhHHHhhcC-CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeE
Confidence 97 7899999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCeeeEEEEEecccccC-CCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHH
Q 045072 473 AVVARPDEFWGETPCAFLSLKAELEK-KPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKA 547 (556)
Q Consensus 473 ~v~~~~~~~~g~~~~~~v~~~~~~~~-~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~ 547 (556)
+|++.+++..|+.++++|++.++... +...++|.+++++++++|++|..++++++||+|++||++|++|++++.+
T Consensus 504 ~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 504 AITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp EEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred EEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 99999999999999999998876541 1235789999999999999999999999999999999999999998765
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=6.1e-78 Score=622.51 Aligned_cols=481 Identities=26% Similarity=0.370 Sum_probs=410.7
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEC--CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceE
Q 045072 14 LTPLGFLERAATVYGDCPSIIYN--NLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAIL 91 (556)
Q Consensus 14 ~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (556)
+|+.++|+++++++|+++|+.+. ++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 57999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHhccCCeEEEE--eccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcccccc
Q 045072 92 NNINTRLDARTISVLLQHSESKLVLV--DYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYE 169 (556)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (556)
+|++|.++.+++.+++++++++++++ +.+..+.+.. .... ..++. ++
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~---~~~~----~~~~~------------------------~~ 130 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQ---SGSG----ARIIF------------------------LG 130 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHH---HCCC----CEEEE------------------------GG
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhh---cccc----ceeEE------------------------ec
Confidence 99999999999999999999999999 6654443311 1110 11111 11
Q ss_pred cccccC-----CCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCC--CCCCEEEEecChhhhh
Q 045072 170 SLVTKG-----DPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSI--PKQPVYLWTLPMFHAN 242 (556)
Q Consensus 170 ~~~~~~-----~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~pl~~~~ 242 (556)
+++... .... ......++++++++|||||||.||||.++|+++..........+++ .+.+++++.+|++|..
T Consensus 131 ~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (504)
T 1t5h_X 131 DLVRDGEPYSYGPPI-EDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209 (504)
T ss_dssp GTEETTEECCCSCCC-CCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHH
T ss_pred chhhcCcccccCCcc-CCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcc
Confidence 111110 0000 1123457899999999999999999999999998887776666777 8899999999999999
Q ss_pred hch-hhhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCC----CCCCCCCCeEEEEeCCCCcHHHH
Q 045072 243 GWS-YPWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLP----RSEPLRNPVHILTAGAPPPAAVL 317 (556)
Q Consensus 243 g~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~l~~l~~v~~~g~~~~~~~~ 317 (556)
++. .++.++..|+++++.+.+++..+++.++++++|+++++|+++..+.+.. ....++++|.+++||+++++++.
T Consensus 210 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~ 289 (504)
T 1t5h_X 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVL 289 (504)
T ss_dssp HHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHH
T ss_pred hHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHH
Confidence 984 5788889999999999999999999999999999999999999997643 24467899999999999999999
Q ss_pred HHhH-hcCCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCC--ceecCCCCeeeE
Q 045072 318 FRTE-SLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESG--LSVSHDGASLGE 394 (556)
Q Consensus 318 ~~~~-~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~--~~~~~~~~~~Ge 394 (556)
+++. .+++.+++.||+||++ .++... ....++.|.|.++. +++|+|++.+ .+++.| +.||
T Consensus 290 ~~~~~~~~~~~~~~YG~TE~~-~~~~~~-------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~~GE 352 (504)
T 1t5h_X 290 ETVHQHLPGEKVNIYGTTEAM-NSLYMR-------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--EEGE 352 (504)
T ss_dssp HHHHHHCCSEEEEEEEETTTE-EEEEEE-------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--CCEE
T ss_pred HHHHHhcCcceeeeecccccc-cccccc-------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--Ccce
Confidence 9998 5689999999999993 222211 11235789999998 9999997432 788887 6899
Q ss_pred EEEe-cCCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccE
Q 045072 395 IVFR-GGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAA 473 (556)
Q Consensus 395 l~i~-~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~ 473 (556)
|+++ |+.++.||+++|+.+...|. +|||+|||+|++++||++++.||.+|+||.+|++|+|.+||+.|.+||+|.+++
T Consensus 353 l~v~gg~~~~~GY~~~~~~t~~~f~-~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 431 (504)
T 1t5h_X 353 LIVAASDSAFVGYLNQPQATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVV 431 (504)
T ss_dssp EEEECCTTSCCCBTTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEE
T ss_pred EEEeCCceeeceecCCchhhhhhhc-CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 9999 99999999999999998886 899999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHh-cCCCCcccceeEEecCCCCCCCCCccHHHHHHHHH
Q 045072 474 VVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRA-RLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 546 (556)
Q Consensus 474 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~ 546 (556)
|++.+++.+|+.++++|+..++.. .+.+++.+++++ +|+.|++|..++++++||+|++||++|++|++++.
T Consensus 432 Vv~~~~~~~g~~~~a~vv~~~~~~--~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 432 VIGLADQRWGQSVTACVVPRLGET--LSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEECSSSSEEEEEEEEECTTCC--CCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEeecCCCCcEEEEEEEecCCcC--cCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 999999989999999999877644 678899999998 89999999999999999999999999999999864
No 13
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.1e-77 Score=622.19 Aligned_cols=496 Identities=19% Similarity=0.200 Sum_probs=417.9
Q ss_pred CCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEec
Q 045072 14 LTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNN 93 (556)
Q Consensus 14 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 93 (556)
+|+.+.|+++++++|+++|+++.++++||+||.++++++|.+|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcccccccccc
Q 045072 94 INTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVT 173 (556)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (556)
++|.++.+++.+++++++++++|++...... . ....+... ..+.+...
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~------~------~~~~~~~~--------------------~~~~~~~~ 128 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT------D------LPVRIVSE--------------------DNLKDIFF 128 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS------C------CSSEEEET--------------------HHHHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc------c------cccceech--------------------hhhhhhcc
Confidence 9999999999999999999999987543110 0 01111100 01111111
Q ss_pred cC-CCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhchhhhHhHh
Q 045072 174 KG-DPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAA 252 (556)
Q Consensus 174 ~~-~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~ 252 (556)
.. ...........++++++++|||||||.||||.++|+++...+......+++.++|++++.+|++|..++..++.++.
T Consensus 129 ~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~ 208 (512)
T 3fce_A 129 THKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLV 208 (512)
T ss_dssp HTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHH
T ss_pred cccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHh
Confidence 11 11111122356789999999999999999999999999998888888889999999999999999999888899999
Q ss_pred cCcEeEEecC---CCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHHHhH-hc-CC
Q 045072 253 VGGTNVCLRK---FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLFRTE-SL-GF 325 (556)
Q Consensus 253 ~g~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~~~~-~~-~~ 325 (556)
.|+++++.+. +++..+++.++++++|+++++|+++..++.... ...++++|.+++||+++++++.+++. .+ ++
T Consensus 209 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~ 288 (512)
T 3fce_A 209 TGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKA 288 (512)
T ss_dssp TTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTC
T ss_pred CCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCC
Confidence 9999999876 789999999999999999999999999987664 55688999999999999999999988 45 89
Q ss_pred eEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCcccc
Q 045072 326 LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLG 405 (556)
Q Consensus 326 ~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~g 405 (556)
.+++.||+||+++.++...... .........++|.+.+++ +++|+|+ +|.+++.| +.|||+|+||+++.|
T Consensus 289 ~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~G 358 (512)
T 3fce_A 289 TIMNTYGPTEATVAVTGIHVTE------EVLDQYKSLPVGYCKSDC-RLLIMKE-DGTIAPDG--EKGEIVIVGPSVSVG 358 (512)
T ss_dssp EEEEEECCGGGSSCSEEEECCH------HHHHHCSSCCCEEECTTC-EEEEECS-SSCBCCTT--SCEEEEEESTTSCSC
T ss_pred EEEeCcccChhhhheeeEEecc------ccccccCCCccccccCCc-EEEEECC-CCCCCCCC--CeEEEEEeccccChh
Confidence 9999999999988766533211 111223446789999999 9999997 79999988 689999999999999
Q ss_pred ccCCCCccccCc---CCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCC
Q 045072 406 YLKDPNGTRKCM---KDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFW 482 (556)
Q Consensus 406 y~~~~~~~~~~~---~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~ 482 (556)
||++|+.+...| .+++||+|||+|++ +||++++.||.+|+||.+|++|+|.+||+.|.++|+|.+++|++.+++..
T Consensus 359 Y~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 437 (512)
T 3fce_A 359 YLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEK 437 (512)
T ss_dssp BTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTE
T ss_pred hcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCC
Confidence 999999888877 34679999999999 79999999999999999999999999999999999999999999998888
Q ss_pred CeeeEEEEEecccccCC--CCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhcccc
Q 045072 483 GETPCAFLSLKAELEKK--PTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKSK 552 (556)
Q Consensus 483 g~~~~~~v~~~~~~~~~--~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~~~~ 552 (556)
++.++++|+..++.... ...+++.++++++|+.|++|..++++++||+|++||++|++|++.+.+....+
T Consensus 438 ~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~ 509 (512)
T 3fce_A 438 YDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHH 509 (512)
T ss_dssp EEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC-----
T ss_pred ceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccccc
Confidence 88999999887654311 12467999999999999999999999999999999999999999998876654
No 14
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.7e-77 Score=634.28 Aligned_cols=513 Identities=22% Similarity=0.293 Sum_probs=425.5
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEC------CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhc
Q 045072 14 LTPLGFLERAATVYGDCPSIIYN------NLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFT 87 (556)
Q Consensus 14 ~t~~~~l~~~~~~~p~~~a~~~~------~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~ 87 (556)
.++.++|+++++.+|+++|+++. ++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~ 155 (652)
T 1pg4_A 76 NLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARI 155 (652)
T ss_dssp CHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHc
Confidence 35678898999999999999983 368999999999999999999999999999999999999999999999999
Q ss_pred cceEeccCCCCCHHHHHHHHhccCCeEEEEeccch---------hhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCcc
Q 045072 88 GAILNNINTRLDARTISVLLQHSESKLVLVDYQSR---------NLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQ 158 (556)
Q Consensus 88 G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (556)
|++++|+++.++.+++.+++++++++++|+++... ..+.++....+. .....++.+....... .
T Consensus 156 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~------~ 228 (652)
T 1pg4_A 156 GAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNV-TSVEHVIVLKRTGSDI------D 228 (652)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTC-CSCCEEEEECSSCCCC------C
T ss_pred CcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCc-CCCCEEEEEeCCCCcc------c
Confidence 99999999999999999999999999999987642 233343332210 0133455554321100 0
Q ss_pred ccCCCcccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhh-hhhhcCCCCCCEEEEecC
Q 045072 159 TVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVD-SLIDWSIPKQPVYLWTLP 237 (556)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~p 237 (556)
........+++++....... ...+.+++++++|+|||||||.||||+++|++++.+... ....+++.++|++++..|
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 306 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD 306 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred -ccCCCceeHHHHHhhcCCCC-CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccC
Confidence 00011234555554332211 122345789999999999999999999999998766543 344578899999999999
Q ss_pred hhhhhhch-hhhHhHhcCcEeEEecC----CCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC----CCCCCCCeEEEEe
Q 045072 238 MFHANGWS-YPWGMAAVGGTNVCLRK----FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNPVHILTA 308 (556)
Q Consensus 238 l~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~l~~v~~~ 308 (556)
++|..|+. .++.++..|+++++.+. +++..+++.++++++|+++++|++++.+.+... ...++++|.+++|
T Consensus 307 ~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~g 386 (652)
T 1pg4_A 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSV 386 (652)
T ss_dssp TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEE
T ss_pred CeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEe
Confidence 99999984 57789999999999874 589999999999999999999999999987643 4568899999999
Q ss_pred CCCCcHHHHHHhH-hcC---CeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCce
Q 045072 309 GAPPPAAVLFRTE-SLG---FLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLS 384 (556)
Q Consensus 309 g~~~~~~~~~~~~-~~~---~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 384 (556)
||++++++.+++. .++ +.+++.||+||+++.++..... ......+++|.|++++ +++|+|+ +|.+
T Consensus 387 Ge~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~---------~~~~~~~s~G~p~~g~-~v~i~d~-~g~~ 455 (652)
T 1pg4_A 387 GEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPG---------AIELKAGSATRPFFGV-QPALVDN-EGHP 455 (652)
T ss_dssp SSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTT---------TCCBCTTCCBSBCTTC-CEEEECT-TCCB
T ss_pred cCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCC---------CcCccCCccccCcCCC-eEEEECC-CCCC
Confidence 9999999999887 566 8999999999998766543211 1122347899999999 9999998 7899
Q ss_pred ecCCCCeeeEEEEec--CCccccccCCCCccccCcC--CCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHH
Q 045072 385 VSHDGASLGEIVFRG--GSMMLGYLKDPNGTRKCMK--DDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVE 460 (556)
Q Consensus 385 ~~~~~~~~Gel~i~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie 460 (556)
++.| +.|||+|+| |++++|||++++.+...+. .+|||+|||+|++|+||++++.||+||+||++|++|++.+||
T Consensus 456 v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE 533 (652)
T 1pg4_A 456 QEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533 (652)
T ss_dssp CCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHH
T ss_pred cCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHH
Confidence 9887 789999999 7899999999987766542 378999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccEEEeecCCCCCeeeEEEEEecccccC-CCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHH
Q 045072 461 SVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEK-KPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKF 539 (556)
Q Consensus 461 ~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~-~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~ 539 (556)
++|.+||+|.+++|++.+++..|+.++++|++.++... +...++|.+++++++++|++|..++++++||+|++||++|+
T Consensus 534 ~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~ 613 (652)
T 1pg4_A 534 SALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRR 613 (652)
T ss_dssp HHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHH
T ss_pred HHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHH
Confidence 99999999999999999998889999999998876431 01267899999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 045072 540 ELREMAKAM 548 (556)
Q Consensus 540 ~l~~~~~~~ 548 (556)
+|++++.+.
T Consensus 614 ~L~~~~~~~ 622 (652)
T 1pg4_A 614 ILRKIAAGD 622 (652)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhCC
Confidence 999999875
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=6.5e-77 Score=615.90 Aligned_cols=494 Identities=19% Similarity=0.225 Sum_probs=422.8
Q ss_pred CCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCChHHHHHHHHHhhhccceEe
Q 045072 14 LTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSI-GITRGHVVSVVAPNIPAMYEAHFAIPFTGAILN 92 (556)
Q Consensus 14 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~-g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v 92 (556)
+|+.+.|+++++++|+++|+++.++++||+||.++++++|.+|++. |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 5899999999999999999999999999999999999999999985 888999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCccccccccc
Q 045072 93 NINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLV 172 (556)
Q Consensus 93 ~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (556)
|++|.++.+++.+++++++++++|++...... .... ... ...+.+++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~------~~~~---~~~------------------------~~~~~~~~ 127 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID------AVGQ---QIQ------------------------TVSAEELL 127 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT------CCCC---SSC------------------------EEEHHHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch------hccc---ccc------------------------eecHhhhh
Confidence 99999999999999999999999986543210 0000 000 11222222
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhchhhhHhHh
Q 045072 173 TKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAA 252 (556)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~ 252 (556)
..............++++++++|||||||.||+|.++|+++..........+++.+++++++.+|++|..++..++.++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~ 207 (511)
T 3e7w_A 128 ENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQ 207 (511)
T ss_dssp TSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHH
T ss_pred ccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHh
Confidence 22222222222356789999999999999999999999999998888888889999999999999999999888899999
Q ss_pred cCcEeEEecC---CCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHHHhH-hc-CC
Q 045072 253 VGGTNVCLRK---FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLFRTE-SL-GF 325 (556)
Q Consensus 253 ~g~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~~~~-~~-~~ 325 (556)
.|+++++.+. +++..+++.++++++|+++++|+++..+..... ...++++|.++++|+++++++.+++. .+ ++
T Consensus 208 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~ 287 (511)
T 3e7w_A 208 SGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKA 287 (511)
T ss_dssp TTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTC
T ss_pred cCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCc
Confidence 9999998875 689999999999999999999999999988765 55678999999999999999999998 45 89
Q ss_pred eEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCcccc
Q 045072 326 LVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLG 405 (556)
Q Consensus 326 ~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~g 405 (556)
.+++.||+||+++.++....... ........++|.|.+++ +++|+|+ +|.+++.| +.|||+|+|++++.|
T Consensus 288 ~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v~~G 357 (511)
T 3e7w_A 288 KIFNTYGPTEATVAVTSVEITND------VISRSESLPVGFAKPDM-NIFIMDE-EGQPLPEG--EKGEIVIAGPSVSRG 357 (511)
T ss_dssp EEEECCCCGGGSSCSEEEEECHH------HHTTCSSCCCBEECTTC-EEEEECT-TSCBCCTT--CCEEEEEESTTSCCC
T ss_pred EEEeCcccchheeeeeEEecccc------ccccCCcCCCcceeCCC-EEEEECC-CCCCCCCC--CceEEEEecCccChh
Confidence 99999999999887665432211 11122345789999999 9999998 69999998 789999999999999
Q ss_pred ccCCCCccccCcC-CCC--ceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCC
Q 045072 406 YLKDPNGTRKCMK-DDG--WFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFW 482 (556)
Q Consensus 406 y~~~~~~~~~~~~-~~~--~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~ 482 (556)
||++|+.+...|. .+| ||+|||+|++ +||++++.||.+|+||.+|++|+|.+||+.|.++|+|.+++|++.+++..
T Consensus 358 Y~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~ 436 (511)
T 3e7w_A 358 YLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGT 436 (511)
T ss_dssp BTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSS
T ss_pred hCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCC
Confidence 9999999988873 123 7999999999 59999999999999999999999999999999999999999999998888
Q ss_pred CeeeEEEEEecccccCC--CCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhccc
Q 045072 483 GETPCAFLSLKAELEKK--PTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKS 551 (556)
Q Consensus 483 g~~~~~~v~~~~~~~~~--~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~~~ 551 (556)
++.++++|+..++.... ...+++.++++++|+.|++|..++++++||+|++||++|++|++.+.+....
T Consensus 437 ~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 507 (511)
T 3e7w_A 437 VEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHH 507 (511)
T ss_dssp CCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTC
T ss_pred ceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhccc
Confidence 88999999987764311 1246789999999999999999999999999999999999999998876544
No 16
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=1.2e-76 Score=620.09 Aligned_cols=505 Identities=23% Similarity=0.318 Sum_probs=425.6
Q ss_pred CCCCCCCHHHHHHHHHHh-----cCCCCEEEEC-----CccccHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCChHHH
Q 045072 9 ANSSPLTPLGFLERAATV-----YGDCPSIIYN-----NLIYTWSQTHRRCLQLASSLSSI-GITRGHVVSVVAPNIPAM 77 (556)
Q Consensus 9 ~~~~~~t~~~~l~~~~~~-----~p~~~a~~~~-----~~~~Ty~~l~~~~~~la~~L~~~-g~~~gd~V~i~~~~~~~~ 77 (556)
.+..-.++.++|+++++. +|+++|+++. ++++||+||.++++++|.+|++. |+++||+|+|+++|++++
T Consensus 33 ~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~ 112 (570)
T 3c5e_A 33 VPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW 112 (570)
T ss_dssp CCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH
T ss_pred CCccccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH
Confidence 333334567899999998 9999999983 27899999999999999999998 999999999999999999
Q ss_pred HHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCc
Q 045072 78 YEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSS 157 (556)
Q Consensus 78 ~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (556)
++++|||+++|++++|++|.++.+++.+++++++++++|++.+....+.......+. ...++.+++...
T Consensus 113 ~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 113 WLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPS---LRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTT---CCEEEEESSSCC--------
T ss_pred HHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCc---eeEEEEecccCc--------
Confidence 999999999999999999999999999999999999999999887776665444332 223444432110
Q ss_pred cccCCCcccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHH--HHhhhhhhcCCCCCCEEEEe
Q 045072 158 QTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFV--MTVDSLIDWSIPKQPVYLWT 235 (556)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~--~~~~~~~~~~~~~~~~~~~~ 235 (556)
.....+++++........ .....++++++|+|||||||.||||.++|+ ++. ..... ..+++.++|++++.
T Consensus 182 -----~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~ 253 (570)
T 3c5e_A 182 -----DGWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTI 253 (570)
T ss_dssp -----TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEEC
T ss_pred -----cccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEc
Confidence 011234444433322211 123467899999999999999999999999 444 33333 56788999999999
Q ss_pred cChhhhhhch-hhhHhHhcCcEeEEec--CCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC-CCCCCCCeEEEEeCCC
Q 045072 236 LPMFHANGWS-YPWGMAAVGGTNVCLR--KFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR-SEPLRNPVHILTAGAP 311 (556)
Q Consensus 236 ~pl~~~~g~~-~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-~~~l~~l~~v~~~g~~ 311 (556)
+|++|..++. .++.++..|+++++.. .+++..+++.++++++|+++++|++++.+.+... ...++++|.+++||++
T Consensus 254 ~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 254 SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp CCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred CchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 9999999986 5778889999999886 6899999999999999999999999999987643 4467899999999999
Q ss_pred CcHHHHHHhH-hcCCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCC
Q 045072 312 PPAAVLFRTE-SLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGA 390 (556)
Q Consensus 312 ~~~~~~~~~~-~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~ 390 (556)
+++++.+++. .+++.+++.||+||++.+++.... .....+++|.|.+++ +++|+|+ ++.+++.|
T Consensus 334 l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~-----------~~~~~~~vG~p~~~~-~v~i~d~-~g~~~~~G-- 398 (570)
T 3c5e_A 334 LLPETLENWRAQTGLDIRESYGQTETGLTCMVSKT-----------MKIKPGYMGTAASCY-DVQIIDD-KGNVLPPG-- 398 (570)
T ss_dssp CCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTT-----------SCCCTTCCCEECTTC-CEEEECT-TSCBCCTT--
T ss_pred CCHHHHHHHHHHhCCchhhccchhhcccceecCcc-----------cccCCCcccccCCCc-eEEEECC-CCCCCCCC--
Confidence 9999999988 469999999999999865543221 012346899999999 9999997 68999988
Q ss_pred eeeEEEEe-----cCCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhc
Q 045072 391 SLGEIVFR-----GGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYT 465 (556)
Q Consensus 391 ~~Gel~i~-----~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~ 465 (556)
+.|||+|+ |++++.||+++|+.+...|. ++||+|||+|++|+||++++.||.||+||++|++|+|.+||+.|.+
T Consensus 399 ~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~-~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 399 TEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIR-GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp CCEEEEEECSSBCCTTCCCEETTCHHHHHHTEE-TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHT
T ss_pred CCCeeEEeccCCCCchhhccccCChhHhhhhhc-CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 68999999 99999999999999998887 8999999999999999999999999999999999999999999999
Q ss_pred CCCccccEEEeecCCCCCeeeEEEEEecccccC---CCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHH
Q 045072 466 NPAVNEAAVVARPDEFWGETPCAFLSLKAELEK---KPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELR 542 (556)
Q Consensus 466 ~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~---~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~ 542 (556)
+|+|.+++|++.+++..|+.++++|+..++... +...++|.++++++++.|++|..++++++||+|++||++|++|+
T Consensus 478 ~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~ 557 (570)
T 3c5e_A 478 HPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLR 557 (570)
T ss_dssp STTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHH
T ss_pred CCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHH
Confidence 999999999999998889999999998765421 12367899999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 045072 543 EMAKAM 548 (556)
Q Consensus 543 ~~~~~~ 548 (556)
+.+.+.
T Consensus 558 ~~~~~~ 563 (570)
T 3c5e_A 558 DKEWKM 563 (570)
T ss_dssp HHHTC-
T ss_pred HHHHhh
Confidence 987543
No 17
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.4e-77 Score=626.01 Aligned_cols=482 Identities=20% Similarity=0.242 Sum_probs=409.2
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceE
Q 045072 12 SPLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAIL 91 (556)
Q Consensus 12 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (556)
...|+.++|.++++++|+++|+++.++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|+++
T Consensus 37 ~~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 116 (563)
T 1amu_A 37 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAY 116 (563)
T ss_dssp TTCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcccccccc
Q 045072 92 NNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESL 171 (556)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (556)
+|++|.++.+++.+++++++++++|++.+...... .... ...+..+.... +.
T Consensus 117 vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~----~~~~---~~~~~~~~~~~-------------------~~-- 168 (563)
T 1amu_A 117 VPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIH----NIQF---NGQVEIFEEDT-------------------IK-- 168 (563)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHT----TSCC---CSEEEECCCST-------------------TT--
T ss_pred EEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhh----hccc---cCceeeecchh-------------------hc--
Confidence 99999999999999999999999999886543321 1110 01122111100 00
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhchhhhHhH
Q 045072 172 VTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMA 251 (556)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~ 251 (556)
... ......+..++++++++|||||||.||||+++|+++..........+++.++|++++.+|++|..++..++.++
T Consensus 169 -~~~--~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 245 (563)
T 1amu_A 169 -IRE--GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL 245 (563)
T ss_dssp -TSC--CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred -ccc--CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHH
Confidence 000 00111234567999999999999999999999999988877777778899999999999999999888888899
Q ss_pred hcCcEeEEecC---CCHHHHHHHHHHhCCcEEechhHHHHHHHcCCCCCCCCCCeEEEEeCCCCcHHHHHHhHhcCCeEE
Q 045072 252 AVGGTNVCLRK---FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTESLGFLVS 328 (556)
Q Consensus 252 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~l~~v~~~g~~~~~~~~~~~~~~~~~l~ 328 (556)
+.|+++++.+. +++..+++.++++++|+++++|+++..+.. ..++++|.+++||+++++++.+++.+ .+.++
T Consensus 246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~----~~~~~lr~~~~gG~~l~~~~~~~~~~-~~~~~ 320 (563)
T 1amu_A 246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDP----ERILSIQTLITAGSATSPSLVNKWKE-KVTYI 320 (563)
T ss_dssp TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCT----TTCCSCSEEEEESSCCCHHHHHHHTT-TSEEE
T ss_pred HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHh----cccccccEEEEEEecCCHHHHHHHHh-CCeEE
Confidence 99999998875 689999999999999999999999887753 34678999999999999999998876 38999
Q ss_pred ecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccC
Q 045072 329 HGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLK 408 (556)
Q Consensus 329 ~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~ 408 (556)
+.||+||++.+++....... ......++|.|++++ +++|+|+ ++.+++.| +.|||+|+|++++.|||+
T Consensus 321 ~~YG~TE~~~~~~~~~~~~~--------~~~~~~~vG~p~~~~-~v~i~d~-~~~~~~~g--~~GEl~v~g~~v~~GY~~ 388 (563)
T 1amu_A 321 NAYGPTETTICATTWVATKE--------TIGHSVPIGAPIQNT-QIYIVDE-NLQLKSVG--EAGELCIGGEGLARGYWK 388 (563)
T ss_dssp EEECCGGGSSCSEEEECCSS--------CCCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEETT
T ss_pred EEECcCHHhHhheeeecccc--------cCCCCCcccceeCCC-EEEEECC-CcCCCCCC--CcEEEEEechhhChhhCC
Confidence 99999999876655322111 011235799999999 9999997 78899988 789999999999999999
Q ss_pred CCCccccCcCC------CCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCC
Q 045072 409 DPNGTRKCMKD------DGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFW 482 (556)
Q Consensus 409 ~~~~~~~~~~~------~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~ 482 (556)
+|+.+...|.. ++||+|||+|++|+||++++.||.+|+||.+|++|+|.+||+.|.++|+|.+++|++.+++..
T Consensus 389 ~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~ 468 (563)
T 1amu_A 389 RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQE 468 (563)
T ss_dssp CHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTS
T ss_pred CchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCC
Confidence 99988877742 469999999999999999999999999999999999999999999999999999999999888
Q ss_pred CeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHH
Q 045072 483 GETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMA 545 (556)
Q Consensus 483 g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~ 545 (556)
++.++++|+.... .+.+++.++++++|+.|++|..++++++||+|++||++|++|++..
T Consensus 469 ~~~~~a~vv~~~~----~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 469 QPYLCAYFVSEKH----IPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp CEEEEEEEEESSC----CCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred CeEEEEEEEeCCC----CCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 8999999987543 5788999999999999999999999999999999999999998653
No 18
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.3e-77 Score=618.44 Aligned_cols=499 Identities=24% Similarity=0.342 Sum_probs=393.0
Q ss_pred CCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEec
Q 045072 14 LTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNN 93 (556)
Q Consensus 14 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 93 (556)
+|+.++|.++++++|+++|+++.++++||+||.++++++|.+|++. +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 4788999999999999999999999999999999999999999996 8999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcccccccccc
Q 045072 94 INTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLVT 173 (556)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (556)
+++.++.+++.+++++++++++|++.+.......... ... ............. ....... ......+....
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~ 148 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LDD---IEFAGRDITTNGL-LDNTMGI----QYDTSNETVVP 148 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TTC---------------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-ccc---ceeeeeecccccc-ccccccc----ccccchhhccc
Confidence 9999999999999999999999998765432211000 000 0000000000000 0000000 00000111111
Q ss_pred cCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhchhhhHhHhc
Q 045072 174 KGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAV 253 (556)
Q Consensus 174 ~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~ 253 (556)
............+++++++++|||||||.||+|.++|+++..........+++.+++++++.+|++|.+|+..++.++..
T Consensus 149 ~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~ 228 (501)
T 3ipl_A 149 KESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIE 228 (501)
T ss_dssp -CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred cCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHc
Confidence 11111111123567899999999999999999999999999988888888899999999999999999999888899999
Q ss_pred CcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCCCCCCCCCeEEEEeCCCCcHHHHHHhHhcCCeEEecccc
Q 045072 254 GGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTESLGFLVSHGYGL 333 (556)
Q Consensus 254 g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~l~~v~~~g~~~~~~~~~~~~~~~~~l~~~yG~ 333 (556)
|+++++.+.+++..+++.++++++|+++++|+++..+.+....... ++|.+++||+++++++.+++.++++++++.||+
T Consensus 229 G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~YG~ 307 (501)
T 3ipl_A 229 GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY-NLQKILLGGAKLSATMIETALQYNLPIYNSFGM 307 (501)
T ss_dssp TCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT-TCCEEEECSSCCCHHHHHHHHHTTCCEEEEEEE
T ss_pred CceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC-cccEEEEeCCCCCHHHHHHHHHhCCCEeccccc
Confidence 9999999999999999999999999999999999999877643333 899999999999999999998889999999999
Q ss_pred cccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccCCCCcc
Q 045072 334 TETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGT 413 (556)
Q Consensus 334 tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~ 413 (556)
||+++.++... .........++|.|.+++ +++|+|++ .+ +.|||+|+|+.+++||+++++.+
T Consensus 308 TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~~~gY~~~~~~t 369 (501)
T 3ipl_A 308 TETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANVMNGYLYPTDLT 369 (501)
T ss_dssp GGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTSCSCCSBSTTCC
T ss_pred cccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccchhhhhCcChhhc
Confidence 99987655432 122223456899999999 99999974 22 46999999999999999999988
Q ss_pred ccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCeeeEEEEEec
Q 045072 414 RKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLK 493 (556)
Q Consensus 414 ~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~ 493 (556)
.. |. +|||+|||+|++++||++++.||.+|+||++|++|+|.+||+.|.++|+|.+++|++.+++..|+.++++++..
T Consensus 370 ~~-~~-~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~ 447 (501)
T 3ipl_A 370 GT-FE-NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE 447 (501)
T ss_dssp CS-EE-TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES
T ss_pred ch-hc-CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC
Confidence 77 65 89999999999999999999999999999999999999999999999999999999999998899999988864
Q ss_pred ccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhc
Q 045072 494 AELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMG 549 (556)
Q Consensus 494 ~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~ 549 (556)
.. .+.+++.++++++|+.|++|..++++++||+|++||++|++|++......
T Consensus 448 ~~----~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~~ 499 (501)
T 3ipl_A 448 SD----ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHHH 499 (501)
T ss_dssp SC----CCHHHHHHHHHHHSCGGGSCSEEEECSSCC--------------------
T ss_pred CC----CCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccccc
Confidence 33 67899999999999999999999999999999999999999999876543
No 19
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.6e-76 Score=625.95 Aligned_cols=501 Identities=23% Similarity=0.338 Sum_probs=427.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccc
Q 045072 10 NSSPLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGA 89 (556)
Q Consensus 10 ~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 89 (556)
-++..|+.++|.++++ ||++|+++.++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 23 ~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 23 YWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp SCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 3567899999999987 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccCCCCCHHHHHHHHhccCCeEEEEeccch-----hhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCc
Q 045072 90 ILNNINTRLDARTISVLLQHSESKLVLVDYQSR-----NLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNF 164 (556)
Q Consensus 90 ~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (556)
+++|++|.++.+++.++++++++++++++.... ............ ...+....+...
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------- 162 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSS---IRVVQLLNDSGE--------------- 162 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTT---CCEEEEETCCST---------------
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCc---cceeeecccccc---------------
Confidence 999999999999999999999999999988654 222222222221 222222222110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhc
Q 045072 165 CCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGW 244 (556)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~ 244 (556)
..+.+......... ...+..++++++++|||||||.||||+++|+++...+......+++.+++++++.+|++|.+++
T Consensus 163 -~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~ 240 (617)
T 3rg2_A 163 -HNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAM 240 (617)
T ss_dssp -TBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred -cchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhh
Confidence 12222222221111 1223567899999999999999999999999999988888888899999999999999999887
Q ss_pred hh--hhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC----CCCCCCCeEEEEeCCCCcHHHHH
Q 045072 245 SY--PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNPVHILTAGAPPPAAVLF 318 (556)
Q Consensus 245 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~l~~v~~~g~~~~~~~~~ 318 (556)
.. ++.++..|+++++.+..++..+++.++++++|+++++|+++..+.+... ...++++|.+++||+++++++.+
T Consensus 241 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~ 320 (617)
T 3rg2_A 241 SSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAA 320 (617)
T ss_dssp HSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHH
T ss_pred hHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHH
Confidence 64 7889999999999988999999999999999999999999988875422 34688999999999999999999
Q ss_pred HhH-hcCCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEE
Q 045072 319 RTE-SLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVF 397 (556)
Q Consensus 319 ~~~-~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i 397 (556)
++. .+++.+++.||+||++..+.... ........++|.|+.+..++.|+|+ ++.+++.| +.|||+|
T Consensus 321 ~~~~~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~~~~i~d~-~~~~~p~G--~~GEl~i 387 (617)
T 3rg2_A 321 RIPAEIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDDEVWVADA-EGNPLPQG--EVGRLMT 387 (617)
T ss_dssp HHHHHTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTCEEEEECT-TSCBCCTT--CCEEEEE
T ss_pred HHHHHhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCceEEEECC-CCCCCCCC--CceEEEe
Confidence 987 56999999999999875443321 1111223578888743339999997 78999998 7899999
Q ss_pred ecCCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEee
Q 045072 398 RGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVAR 477 (556)
Q Consensus 398 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~ 477 (556)
+|+++++||+++|+.+...|..++||+|||+|++++||.+++.||.||+||++|++|+|.+||+.|.++|+|.+++|++.
T Consensus 388 ~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~ 467 (617)
T 3rg2_A 388 RGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSM 467 (617)
T ss_dssp ECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEE
T ss_pred cCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEec
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeeEEEEEecccccCCCCHHHHHHHHHh-cCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhc
Q 045072 478 PDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRA-RLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMG 549 (556)
Q Consensus 478 ~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~-~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~ 549 (556)
+++..|+.++++++..+. .+..++.+++++ .++.|++|..++++++||+|++||++|++|++.+.+..
T Consensus 468 ~~~~~~~~~~a~vv~~~~----~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 536 (617)
T 3rg2_A 468 EDELMGEKSCAYLVVKEP----LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536 (617)
T ss_dssp EETTTEEEEEEEEEESSC----CCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHH
T ss_pred cCcccCeeEEEEEEeCCC----CCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccc
Confidence 998888999999988764 678899999998 69999999999999999999999999999999887643
No 20
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.3e-78 Score=633.20 Aligned_cols=484 Identities=22% Similarity=0.277 Sum_probs=320.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceE
Q 045072 12 SPLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAIL 91 (556)
Q Consensus 12 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (556)
...++.++|+++++++|+++|+++.++++||+||.++++++|.+|+++|+++||+|+|+++|++++++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcccccccc
Q 045072 92 NNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESL 171 (556)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (556)
+|++|.++.+++.+++++++++++|++.+....+ . ....+.+.+..
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------~----~~~~~~~~~~~----------------------- 198 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------T----GTTTLYVEDEA----------------------- 198 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------C----SSEEEECCC-------------------------
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc-------c----CCcceeeeccc-----------------------
Confidence 9999999999999999999999999987643221 0 00111111100
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhchhhhHhH
Q 045072 172 VTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMA 251 (556)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~ 251 (556)
..............++++++|+|||||||.||||+++|+++...... ...+++.++++++..+|++|..+...++.++
T Consensus 199 -~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 276 (570)
T 4gr5_A 199 -ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGAL 276 (570)
T ss_dssp ------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHH
T ss_pred -cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence 00000111112356789999999999999999999999998766554 4456788999999999999887777788899
Q ss_pred hcCcEeEEec--CCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCCCCCCCCCeEEEEeCCCCcHHHHHHhH-hc-CCeE
Q 045072 252 AVGGTNVCLR--KFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTE-SL-GFLV 327 (556)
Q Consensus 252 ~~g~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~l~~v~~~g~~~~~~~~~~~~-~~-~~~l 327 (556)
..|+++++.+ .+++..+++.++++++|+++++|+++..+.+.. ...++++|.+++||++++.+..+++. .+ ++.+
T Consensus 277 ~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l 355 (570)
T 4gr5_A 277 LFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV-PEAFEGVRYAITGGEPASVPHVAKARRDHPALRL 355 (570)
T ss_dssp TTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC-GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEE
T ss_pred hcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc-hhhCCCceEEEEecccCCHHHHHHHHHhCCCcEE
Confidence 9999999886 478999999999999999999999999998755 34578999999999999998888887 44 7899
Q ss_pred EecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCcccccc
Q 045072 328 SHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYL 407 (556)
Q Consensus 328 ~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~ 407 (556)
++.||+||++++++...... ........++|.|++++ +++|+|+ ++.+++.| +.|||+|+|++++.|||
T Consensus 356 ~~~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~v~i~d~-~~~~~~~G--~~GEl~v~g~~v~~GY~ 424 (570)
T 4gr5_A 356 GNGYGPAESMGFTTHHAVVA-------GDLSGTALPIGVPLAGK-RAYVLDD-DLKPAANG--ALGELYVAGAGLAHGYV 424 (570)
T ss_dssp EEEECCGGGCSCSEEEECCG-------GGTTSSSCCCBEECTTE-EEEEECT-TSCBCCTT--CEEEEEEEETTCCCEET
T ss_pred EEeechhhheeeeeeeeecc-------cccCCCccccceeeCCC-EEEEECC-CCCCCCCC--CcEEEEEeecccchhcC
Confidence 99999999988766543211 11112235689999999 9999997 79999998 78999999999999999
Q ss_pred CCCCccccCcCC--------CCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecC
Q 045072 408 KDPNGTRKCMKD--------DGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPD 479 (556)
Q Consensus 408 ~~~~~~~~~~~~--------~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~ 479 (556)
++|+.+...|.. ++||+|||+|++|+||++++.||.+|+||.+|++|+|.+||+.|.++|+|.+++|++.++
T Consensus 425 ~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~ 504 (570)
T 4gr5_A 425 SRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDS 504 (570)
T ss_dssp TCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-------------------------------------
T ss_pred CCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeC
Confidence 999988887743 379999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHH
Q 045072 480 EFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREM 544 (556)
Q Consensus 480 ~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~ 544 (556)
+.+++.++++|+..+... ..+.++|.++++++++.|++|..++++++||+|++||++|++|++.
T Consensus 505 ~~~~~~~~a~vv~~~~~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 505 RLGDKQLVAYVVAERADA-PPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCeEEEEEEEecCCCC-CcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 888888999988765422 1567899999999999999999999999999999999999999875
No 21
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1e-76 Score=629.89 Aligned_cols=514 Identities=22% Similarity=0.322 Sum_probs=422.0
Q ss_pred CCHHHHHHHHHHhcCCCCEEEEC------CccccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCChHHHHHHHHHhhh
Q 045072 14 LTPLGFLERAATVYGDCPSIIYN------NLIYTWSQTHRRCLQLASSLS-SIGITRGHVVSVVAPNIPAMYEAHFAIPF 86 (556)
Q Consensus 14 ~t~~~~l~~~~~~~p~~~a~~~~------~~~~Ty~~l~~~~~~la~~L~-~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 86 (556)
.++.++|+++++.+|+++|+++. ++++||+||.++++++|++|+ +.|+++||+|+|+++|++++++++|||++
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~ 161 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISR 161 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 46778999999999999999983 378999999999999999999 99999999999999999999999999999
Q ss_pred ccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchh---------hHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCc
Q 045072 87 TGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRN---------LVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSS 157 (556)
Q Consensus 87 ~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (556)
+|++++|+++.++.+++.+++++++++++|+++.... .+.++....+ ....++++....... .
T Consensus 162 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vi~~~~~~~~~-----~ 233 (663)
T 1ry2_A 162 IGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETP---GVRHVLVYRKTNNPS-----V 233 (663)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCT---TCCEEEEECSSCCSS-----C
T ss_pred cCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCC---CCceEEEEecCCCCc-----c
Confidence 9999999999999999999999999999999876532 2333333222 134455554321100 0
Q ss_pred cccCCCcccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhh-hhhhcCCCCCCEEEEec
Q 045072 158 QTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVD-SLIDWSIPKQPVYLWTL 236 (556)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 236 (556)
. ........+.+++....... ...+.+++++++|+|||||||.||||+++|++++.+... ....+++.++|++++..
T Consensus 234 ~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 311 (663)
T 1ry2_A 234 A-FHAPRDLDWATEKKKYKTYY-PCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAG 311 (663)
T ss_dssp C-CCSSSEEEHHHHHTTSCSCC-CCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECS
T ss_pred c-cCCCccccHHHHHhhcCCCC-CccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 0 00011234555544332211 122356789999999999999999999999998766543 33457889999999999
Q ss_pred Chhhhhhch-hhhHhHhcCcEeEEecC----CCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC----CCCCCCCeEEEE
Q 045072 237 PMFHANGWS-YPWGMAAVGGTNVCLRK----FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNPVHILT 307 (556)
Q Consensus 237 pl~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~l~~v~~ 307 (556)
|++|..++. .++.+++.|+++++.+. +++..+++.|+++++|+++++|++++.+.+... ...++++|.+++
T Consensus 312 ~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~ 391 (663)
T 1ry2_A 312 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGS 391 (663)
T ss_dssp CTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEE
T ss_pred CcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEE
Confidence 999999984 46788999999998864 588999999999999999999999999987653 346889999999
Q ss_pred eCCCCcHHHHHHhH-hcC---CeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCc
Q 045072 308 AGAPPPAAVLFRTE-SLG---FLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGL 383 (556)
Q Consensus 308 ~g~~~~~~~~~~~~-~~~---~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~ 383 (556)
+||++++++.+++. .++ +++++.||+||+++.++..... .......+++|.|++++ +++|+|+++|.
T Consensus 392 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~--------~~~~~~~gs~G~p~~g~-~v~i~d~~~g~ 462 (663)
T 1ry2_A 392 VGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAG--------GVTPMKPGSASFPFFGI-DAVVLDPNTGE 462 (663)
T ss_dssp CSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTT--------TCCCCCTTCCCEECTTC-CEEEECSSSTT
T ss_pred EcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCC--------CCcccCCCccccCcCCC-eEEEEcCCCCC
Confidence 99999999999988 456 8999999999998766553210 01122347899999999 99999987899
Q ss_pred eecC-CCCeeeEEEEec--CCccccccCCCCccccCcC--CCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHH
Q 045072 384 SVSH-DGASLGEIVFRG--GSMMLGYLKDPNGTRKCMK--DDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVE 458 (556)
Q Consensus 384 ~~~~-~~~~~Gel~i~~--~~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ 458 (556)
+++. + +.|||+|+| |+++.|||++++.+...+. .+|||+|||+|++|+||++++.||.||+||++|.+|++.+
T Consensus 463 ~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~e 540 (663)
T 1ry2_A 463 ELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAE 540 (663)
T ss_dssp CEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHH
T ss_pred cCCCCC--cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHH
Confidence 9887 6 689999999 5899999999987766653 3789999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccEEEeecCCCCCeeeEEEEEeccccc-----CC---CCHHHHHHHHHhcCCCCcccceeEEecCCCC
Q 045072 459 VESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELE-----KK---PTEKEIIEYCRARLPRYMVPKTVVFKEELPK 530 (556)
Q Consensus 459 ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~-----~~---~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~ 530 (556)
||++|.++|.|.+++|++.+++..|+.++++|+++++.. .+ ...++|.+++++++++|++|..++++++||+
T Consensus 541 IE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~ 620 (663)
T 1ry2_A 541 IEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPK 620 (663)
T ss_dssp HHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCB
T ss_pred HHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCC
Confidence 999999999999999999999888999999999887542 11 2368899999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHHh
Q 045072 531 TSTGKIKKFELREMAKAM 548 (556)
Q Consensus 531 t~~GKv~r~~l~~~~~~~ 548 (556)
|++||++|++|++++.+.
T Consensus 621 T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 621 TRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CTTSCBCHHHHHHSCC--
T ss_pred CCccCchHHHHHHHHcCC
Confidence 999999999999987665
No 22
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.3e-76 Score=615.90 Aligned_cols=497 Identities=21% Similarity=0.243 Sum_probs=407.3
Q ss_pred CCCCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceE
Q 045072 12 SPLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAIL 91 (556)
Q Consensus 12 ~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 91 (556)
+..|+.+.|+++++++|+++|+.+.++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~ 81 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAY 81 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcccccccc
Q 045072 92 NNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYESL 171 (556)
Q Consensus 92 v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (556)
+|++|.++.+++.+++++++++++|++++....+. ...++.. ..+...
T Consensus 82 vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~-----------~~~~~~~---------------------~~~~~~ 129 (521)
T 3l8c_A 82 IPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIE-----------GISLVSL---------------------SEIESA 129 (521)
T ss_dssp EEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCT-----------TSEEEEH---------------------HHHHHH
T ss_pred EecCccccHHHHHHHHHhCCCCEEEecCccccccc-----------cCcccch---------------------hhhhhc
Confidence 99999999999999999999999999876421100 0000000 000000
Q ss_pred cccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhh--cCCCCCCEEEEecChhhhhhchhhhH
Q 045072 172 VTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLID--WSIPKQPVYLWTLPMFHANGWSYPWG 249 (556)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~pl~~~~g~~~~~~ 249 (556)
.....+ ........++++++++|||||||.||||+++|+++.......... +++...++++...|++|..++...+.
T Consensus 130 ~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 208 (521)
T 3l8c_A 130 KLAEMP-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP 208 (521)
T ss_dssp HHHTCC-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHH
T ss_pred ccccCC-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHH
Confidence 001111 111223567899999999999999999999999998776655544 67789999999999999988888888
Q ss_pred hHhcCcEeEEecC---CCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHHHhH-hc
Q 045072 250 MAAVGGTNVCLRK---FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLFRTE-SL 323 (556)
Q Consensus 250 ~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~~~~-~~ 323 (556)
++..|+++++.+. .++..+++.+.++++|++.++|+++..+..... ...++++|.+++||+++++++.+++. .+
T Consensus 209 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 288 (521)
T 3l8c_A 209 TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERF 288 (521)
T ss_dssp HHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred HHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHC
Confidence 8999999998875 489999999999999999999999999887654 55688999999999999999999887 45
Q ss_pred -CCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCc
Q 045072 324 -GFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSM 402 (556)
Q Consensus 324 -~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~ 402 (556)
++.+++.||+||++++++....... ........++|.|.+++ +++|+|+ +|.+++.| +.|||+|+||++
T Consensus 289 ~~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~v 358 (521)
T 3l8c_A 289 PSAKIINAYGPTEATVALSAIEITRE------MVDNYTRLPIGYPKPDS-PTYIIDE-DGKELSSG--EQGEIIVTGPAV 358 (521)
T ss_dssp TTCEEEEEECCGGGSSCSEEEEECHH------HHHHCSSCEEEEECTTS-CEEEECT-TSCBCCTT--CCEEEEEESTTS
T ss_pred CCceEEeCcCccHHhhhhceeecccc------cccCCCccccccccCCC-EEEEECC-CcCCCCCC--CceEEEeccccc
Confidence 8999999999999887665432211 11122345799999999 9999997 79999988 689999999999
Q ss_pred cccccCCCCccccCc---CCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecC
Q 045072 403 MLGYLKDPNGTRKCM---KDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPD 479 (556)
Q Consensus 403 ~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~ 479 (556)
+.|||++|+.+...| .+++||+|||+|++|+||++++.||.+|+||.+|++|+|.+||+.|.++|+|.+++|++..+
T Consensus 359 ~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 438 (521)
T 3l8c_A 359 SKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYN 438 (521)
T ss_dssp CSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCS
T ss_pred ChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeec
Confidence 999999999988877 45789999999999999999999999999999999999999999999999999999999875
Q ss_pred C-CCCeeeEEEEEecccccCCC-----CHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhccc
Q 045072 480 E-FWGETPCAFLSLKAELEKKP-----TEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKS 551 (556)
Q Consensus 480 ~-~~g~~~~~~v~~~~~~~~~~-----~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~~~ 551 (556)
+ ..++.++++|+..++..... ..+++.++++++++.|++|..++++++||+|++||++|++|++++.++...
T Consensus 439 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~ 516 (521)
T 3l8c_A 439 KEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGH 516 (521)
T ss_dssp SSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-----
T ss_pred CCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcc
Confidence 4 34578999999887643211 257889999999999999999999999999999999999999998775543
No 23
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=5.5e-76 Score=611.96 Aligned_cols=497 Identities=24% Similarity=0.298 Sum_probs=407.5
Q ss_pred CCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEec
Q 045072 14 LTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNN 93 (556)
Q Consensus 14 ~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~ 93 (556)
.++.++|+++++ +|+++|+++.++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 24 ~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp 102 (529)
T 2v7b_A 24 NFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVV 102 (529)
T ss_dssp CHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEE
T ss_pred eHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEe
Confidence 347889999999 9999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCC-CCeEEEcCCCCCCCCCCCccccCCCccccccccc
Q 045072 94 INTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKC-PPLVLIADHTDHDNDNKSSQTVDSNFCCTYESLV 172 (556)
Q Consensus 94 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (556)
+++.++.+++.+++++++++++|++.+....+......... . ..++..+..... ......+++++
T Consensus 103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 168 (529)
T 2v7b_A 103 ANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEH---DGCQLIVSQPRESE-----------PRLAPLFEELI 168 (529)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC------CCEEEEECC-----------------CCCBHHHHH
T ss_pred cCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccc---cCceEEEecccccc-----------cccccchhhhh
Confidence 99999999999999999999999998877666555433221 1 223332221100 00012344443
Q ss_pred ccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHH-HHHHhhhhhhcCCCCCCEEEEecChhhhhhchh-hhHh
Q 045072 173 TKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGI-FVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSY-PWGM 250 (556)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~-~~~~ 250 (556)
....... ...+..++++++++|||||||.||||.++|+++ ..........+++.++|++++.+|++|.+++.. ++.+
T Consensus 169 ~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 247 (529)
T 2v7b_A 169 DAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFP 247 (529)
T ss_dssp HTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHH
T ss_pred ccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHH
Confidence 3222211 112356789999999999999999999999998 555555555678899999999999999999865 5678
Q ss_pred HhcCcEeEEe-cCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCCCCC--CCCCeEEEEeCCCCcHHHHHHhH-hcCCe
Q 045072 251 AAVGGTNVCL-RKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEP--LRNPVHILTAGAPPPAAVLFRTE-SLGFL 326 (556)
Q Consensus 251 ~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--l~~l~~v~~~g~~~~~~~~~~~~-~~~~~ 326 (556)
+..|+++++. ..+++..+++.++++++|+++++|+++..+.+...... ..++|.+++||+++++++.+++. .+++.
T Consensus 248 l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~ 327 (529)
T 2v7b_A 248 LSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCE 327 (529)
T ss_dssp HHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSCC
T ss_pred HhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCCc
Confidence 8889998887 56899999999999999999999999999987654221 34899999999999999999998 46999
Q ss_pred EEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccc
Q 045072 327 VSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGY 406 (556)
Q Consensus 327 l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy 406 (556)
+++.||+||++.+++..... ....+++|.|.+++ +++|+|+ ++.+++.| +.|||+|+|++++.||
T Consensus 328 i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY 392 (529)
T 2v7b_A 328 ILDGIGSTEMLHIFLSNRAG-----------AVEYGTTGRPVPGY-EIELRDE-AGHAVPDG--EVGDLYIKGPSAAVMY 392 (529)
T ss_dssp EEEEEECTTTSSEEEECCTT-----------CCCTTSCCEECTTC-EEEEECT-TSCBCCTT--SCEEEEEECTTCCCCB
T ss_pred eeeeEchhhcCceeeccccC-----------CCccCCcccCCCCC-EEEEECC-CCCCCCCC--CccEEEEecCCccccc
Confidence 99999999997665543211 12346889999999 9999997 79999988 7899999999999999
Q ss_pred cCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCeee
Q 045072 407 LKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETP 486 (556)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~ 486 (556)
|++++.+...|. ++||+|||+|++++||++++.||.+|+||.+|++|+|.+||+.|.++|+|.+++|++. ++..++.+
T Consensus 393 ~~~~~~t~~~f~-~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~ 470 (529)
T 2v7b_A 393 WNNREKSRATFL-GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKT 470 (529)
T ss_dssp TTCHHHHHHHEE-TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEE
T ss_pred CCChHHHHHhhh-cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEE
Confidence 999999988888 8999999999999999999999999999999999999999999999999999999999 66667888
Q ss_pred EEEEEecccccCC-CCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHH
Q 045072 487 CAFLSLKAELEKK-PTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 543 (556)
Q Consensus 487 ~~~v~~~~~~~~~-~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~ 543 (556)
+++|+..++.... ...+++.++++++++.|++|..++++++||+|++||++|++|++
T Consensus 471 ~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 471 RAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 9999887653211 13568999999999999999999999999999999999999985
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=6.1e-76 Score=618.50 Aligned_cols=479 Identities=20% Similarity=0.194 Sum_probs=396.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 045072 11 SSPLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAI 90 (556)
Q Consensus 11 ~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (556)
..+.|+.++|+++++++||++|+++.++++||+||.++++++|++|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCccccccc
Q 045072 91 LNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYES 170 (556)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (556)
++|++|.++.+++.++++++++++++++....... . ....... ..
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~----~~~~~~~------------------------~~ 148 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------N----GLPCVPV------------------------RH 148 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------T----TSCEEEG------------------------GG
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------c----CCceeee------------------------cc
Confidence 99999999999999999999999999765432110 0 0000100 00
Q ss_pred ccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhchhhhHh
Q 045072 171 LVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGM 250 (556)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~ 250 (556)
... ...........++++++++|||||||.||||+++|+++.+.+.. ...+++.++++++..+|++|..++..++.+
T Consensus 149 ~~~--~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 225 (620)
T 4dg8_A 149 LPA--APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGA 225 (620)
T ss_dssp CCC--CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHH
T ss_pred CCc--CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHH
Confidence 000 00011111245789999999999999999999999999776655 456788999999999999999999889999
Q ss_pred HhcCcEeEEec--CCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCCCCCCCCCeEEEEeCCCCcHHHHHHhH-hc-CCe
Q 045072 251 AAVGGTNVCLR--KFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTE-SL-GFL 326 (556)
Q Consensus 251 ~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~l~~v~~~g~~~~~~~~~~~~-~~-~~~ 326 (556)
+..|+++++.+ .+++..+++.++++++|+++++|+++..+.+.. ...++++|.+++|||+++.+..+++. .+ ++.
T Consensus 226 l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~ 304 (620)
T 4dg8_A 226 LLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD-PDCLGGLRQLLTGGDILSVPHVRRALLRHPRLH 304 (620)
T ss_dssp HTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-GGGGTTCSEEEEESSCCCHHHHHHHHHHCTTCE
T ss_pred HhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-hhhCCCccEEEEEeCcCCHHHHHHHHHhCCCeE
Confidence 99999998864 579999999999999999999999999997643 35678999999999999988887766 43 889
Q ss_pred EEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCce-ecCCCCeeeEEEEecCCcccc
Q 045072 327 VSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLS-VSHDGASLGEIVFRGGSMMLG 405 (556)
Q Consensus 327 l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~-~~~~~~~~Gel~i~~~~~~~g 405 (556)
+++.||+||++.+++..... .........++|.|++++ +++|+|+ ++.+ ++.| +.|||+|+|+++++|
T Consensus 305 l~n~YG~TE~~~~~~~~~~~-------~~~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~~~~g--~~GEl~i~G~~v~~G 373 (620)
T 4dg8_A 305 LVNGYGPTENTTFTCCHVVT-------DDDLEEDDIPIGKAIAGT-AVLLLDE-HGQEIAEPD--RAGEIVAFGAGLAQG 373 (620)
T ss_dssp EEEEECCGGGCSCSEEEECC-------TGGGGSSSCCCBEECTTE-EEEEECT-TSCBCCSSS--CCEEEEEEETTCCSE
T ss_pred EEeeEchhhhhhheEEEecc-------ccccCCCCCCceecccCc-EEEEECc-cCCCCCCCC--CceEEEEeccccccc
Confidence 99999999998776554321 112223346899999999 9999998 4555 6777 689999999999999
Q ss_pred ccCCCCccccCcCCC-------CceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeec
Q 045072 406 YLKDPNGTRKCMKDD-------GWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARP 478 (556)
Q Consensus 406 y~~~~~~~~~~~~~~-------~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~ 478 (556)
|+++|+.+...|..+ +||+|||+|++++||++++.||.||+||++|++|+|.+||+.|.++|+|.+++|++.+
T Consensus 374 Y~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~ 453 (620)
T 4dg8_A 374 YRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRE 453 (620)
T ss_dssp ETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEE
T ss_pred cCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEe
Confidence 999999998888643 7999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHh
Q 045072 479 DEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAM 548 (556)
Q Consensus 479 ~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~ 548 (556)
++..+..+ ++++.... ++.++++++|+.|++|..++++++||+|++||++|++|++.+.+.
T Consensus 454 ~~~~~~lv-~~~~~~~~--------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 454 RNGVKQLL-CAWTGKAD--------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp ETTEEEEE-EEEEECTT--------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred CCCceEEE-EEEecChH--------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 77544433 33332211 233556778999999999999999999999999999999877543
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.9e-76 Score=657.13 Aligned_cols=517 Identities=25% Similarity=0.365 Sum_probs=343.7
Q ss_pred CCCHHHHHHHHHHhcCCCCEEEEC--CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 045072 13 PLTPLGFLERAATVYGDCPSIIYN--NLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAI 90 (556)
Q Consensus 13 ~~t~~~~l~~~~~~~p~~~a~~~~--~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (556)
+.|+.++|.++++++|+++|+++. ++++||+||.++++++|.+|++.|+++||+|+|+++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 579999999999999999999986 688999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCccccccc
Q 045072 91 LNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFCCTYES 170 (556)
Q Consensus 91 ~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (556)
++|++|.++.+++.+++++++++++|++.+..+.+....... ...++.+++.... + .......+.+
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------~--~~~~~~~~~~ 205 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-----GVVIVCIDDNESV-------P--IPEGCLRFTE 205 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-----CCEEEECCCCTTS-------C--CCTTEEEGGG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-----CceEEEeCCcccc-------c--CCcccccHHH
Confidence 999999999999999999999999999998877666554332 1223333222110 0 0112233444
Q ss_pred ccccCCCC--CCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhh----hcCCCCCCEEEEecChhhhhhc
Q 045072 171 LVTKGDPN--FKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLI----DWSIPKQPVYLWTLPMFHANGW 244 (556)
Q Consensus 171 ~~~~~~~~--~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~----~~~~~~~~~~~~~~pl~~~~g~ 244 (556)
+....... .....+.+++++++|+|||||||.||||+++|+++...+..... .+.+.+++++++.+|++|.+++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 285 (979)
T 3tsy_A 206 LTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYAL 285 (979)
T ss_dssp TSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHH
T ss_pred HhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHH
Confidence 44332221 11122356789999999999999999999999999877665433 3567899999999999999998
Q ss_pred hh-hhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHHHHHHhH
Q 045072 245 SY-PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAAVLFRTE 321 (556)
Q Consensus 245 ~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~~~~~~~ 321 (556)
.. ++.++..|+++++.+++++..+++.++++++|+++++|+++..+.+... ...++++|.+++||+++++++.+++.
T Consensus 286 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~ 365 (979)
T 3tsy_A 286 NSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVN 365 (979)
T ss_dssp HHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHH
T ss_pred HHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHH
Confidence 54 6778889999999999999999999999999999999999999988765 55688999999999999999999998
Q ss_pred -hc-CCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEec
Q 045072 322 -SL-GFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRG 399 (556)
Q Consensus 322 -~~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~ 399 (556)
.+ ++.+++.||+||++.+++.+..... .......+++|.|++++ +++|+|++++.+++.| +.|||+|+|
T Consensus 366 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~g 436 (979)
T 3tsy_A 366 AKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICIRG 436 (979)
T ss_dssp HHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEEES
T ss_pred HHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEEEC
Confidence 45 8999999999999877655421111 11123346889999999 9999998889999998 689999999
Q ss_pred CCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecC
Q 045072 400 GSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPD 479 (556)
Q Consensus 400 ~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~ 479 (556)
+++++|||++|+.+...|..+|||+|||+|++++||++++.||.||+||++|++|+|.+||+.|.++|+|.+++|++.++
T Consensus 437 ~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~ 516 (979)
T 3tsy_A 437 HQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKE 516 (979)
T ss_dssp TTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC----------------------------------
T ss_pred CCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecc
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhcccccc
Q 045072 480 EFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMGKSKVS 554 (556)
Q Consensus 480 ~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~~~~~~ 554 (556)
+..|+.++++|+..++.. .+.+++.++++++++.|++|..++++++||+|++||++|++|++++.+.....+.
T Consensus 517 ~~~g~~~~a~vv~~~~~~--~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~ 589 (979)
T 3tsy_A 517 EAAGEVPVAFVVKSKDSE--LSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGSGMA 589 (979)
T ss_dssp --------------------------------------------------------------------------C
T ss_pred cCCCcEEEEEEEECCCCC--CCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCCccc
Confidence 888999999998776644 5678899999999999999999999999999999999999999999887665554
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=6.4e-76 Score=606.33 Aligned_cols=480 Identities=25% Similarity=0.335 Sum_probs=386.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCC-CCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhh
Q 045072 7 CTANSSPLTPLGFLERAATVYGD-CPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIP 85 (556)
Q Consensus 7 ~~~~~~~~t~~~~l~~~~~~~p~-~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 85 (556)
.+...+-.|+.+.|.++++++|+ ++|+++.++++||+||.++++++|.+|. .|++|+++++|++++++++|||+
T Consensus 15 ~~~~~~~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~ 89 (505)
T 3nyq_A 15 VPRGSHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAAL 89 (505)
T ss_dssp ---------CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHH
T ss_pred ccCCcccchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHH
Confidence 34444567889999999999987 9999999999999999999999998875 38899999999999999999999
Q ss_pred hccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcc
Q 045072 86 FTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFC 165 (556)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (556)
++|++++|++|.++.+++.+++++++++++|++.+.... .... ....+.+...
T Consensus 90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~~~~----~~~~~~~~~~------------------ 142 (505)
T 3nyq_A 90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELP-----PALG----ALERVDVDVR------------------ 142 (505)
T ss_dssp HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC-----GGGT----TSEEEECCTT------------------
T ss_pred HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccc-----hhhc----cccccccccc------------------
Confidence 999999999999999999999999999999998652100 0000 0001111000
Q ss_pred cccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhch
Q 045072 166 CTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWS 245 (556)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~ 245 (556)
..........+++++++++|||||||.||||+++|+++..........+++.++|++++.+|++|..|+.
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 212 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHT
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHH
Confidence 0001111234678999999999999999999999999999888888888999999999999999999986
Q ss_pred h-hhHhHhcCcEeEEecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC-----CCCCCCCeEEEEeCCCCcHHHHHH
Q 045072 246 Y-PWGMAAVGGTNVCLRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR-----SEPLRNPVHILTAGAPPPAAVLFR 319 (556)
Q Consensus 246 ~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----~~~l~~l~~v~~~g~~~~~~~~~~ 319 (556)
. ++.++..|+++++.+.+++..+++.+ ++++|+++++|+++..+.+... ...++++|.+++||+++++++.++
T Consensus 213 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~ 291 (505)
T 3nyq_A 213 LGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHER 291 (505)
T ss_dssp TTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHH
Confidence 4 78899999999999999999999999 8899999999999999986332 234668899999999999999999
Q ss_pred hH-hcCCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecC-CCCeeeEEEE
Q 045072 320 TE-SLGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSH-DGASLGEIVF 397 (556)
Q Consensus 320 ~~-~~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~-~~~~~Gel~i 397 (556)
+. .+++.+++.||+||++..++.... .....+++|.|++++ +++|+|+ ++.+++. ++++.|||+|
T Consensus 292 ~~~~~~~~~~~~YG~TE~~~~~~~~~~-----------~~~~~~~vG~p~~~~-~~~i~d~-~g~~~~~~~~g~~GEl~v 358 (505)
T 3nyq_A 292 IAAATGRRVIERYGMTETLMNTSVRAD-----------GEPRAGTVGVPLPGV-ELRLVEE-DGTPIAALDGESVGEIQV 358 (505)
T ss_dssp HHHHHSCCCEEEEEETTTEEEEECCTT-----------SCCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEE
T ss_pred HHHhcCCeeecccchhhcccccccCCC-----------CCCCCCCcccCCCCC-EEEEECC-CCCCcccCCCCceEEEEE
Confidence 88 569999999999999866544221 112346899999999 9999998 6887775 2226899999
Q ss_pred ecCCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccC-CCeEeeCcEeeChHHHHHHHhcCCCccccEEEe
Q 045072 398 RGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRS-KDVIISGGENLSSVEVESVLYTNPAVNEAAVVA 476 (556)
Q Consensus 398 ~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~-~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~ 476 (556)
+|++++.|||++|+.+...|..+|||+|||+|++++||++++.||. ||+||++|++|+|.+||+.|.++|+|.+++|++
T Consensus 359 ~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~ 438 (505)
T 3nyq_A 359 RGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTG 438 (505)
T ss_dssp ESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEE
T ss_pred ecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEe
Confidence 9999999999999999999988999999999999999999999998 589999999999999999999999999999999
Q ss_pred ecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHH
Q 045072 477 RPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELRE 543 (556)
Q Consensus 477 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~ 543 (556)
.+++..|+.++++|+..++.. ..+.+++.++++++|+.|++|..++++++||+|++||++|++|++
T Consensus 439 ~~~~~~g~~l~a~vv~~~~~~-~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 439 EPDPDLGERIVAWIVPADPAA-PPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEETTTEEEEEEEEEESSTTS-CCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred eECCCCCcEEEEEEEECCCCC-CCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 999988999999999876322 267899999999999999999999999999999999999999986
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=9.5e-74 Score=599.60 Aligned_cols=499 Identities=18% Similarity=0.170 Sum_probs=313.7
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCEEEECC----------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHH
Q 045072 9 ANSSPLTPLGFLERAATVYGDCPSIIYNN----------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMY 78 (556)
Q Consensus 9 ~~~~~~t~~~~l~~~~~~~p~~~a~~~~~----------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~ 78 (556)
..++++|+.++|+++++++|+++|+++.+ +++||+||.++++++|++|.+.|+ +||+|+++++|+++++
T Consensus 15 ~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~ 93 (562)
T 3ite_A 15 QYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAF 93 (562)
T ss_dssp ---CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHH
T ss_pred eecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHH
Confidence 34677899999999999999999998753 789999999999999999999999 7999999999999999
Q ss_pred HHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCcc
Q 045072 79 EAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQ 158 (556)
Q Consensus 79 ~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (556)
+++|||+++|++++|++|.++.+++.+++++++++++|++++..... .. ...........
T Consensus 94 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-----~~-----~~~~~~~~~~~---------- 153 (562)
T 3ite_A 94 AIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGV-----EL-----PPETKVLDTKN---------- 153 (562)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTC-----CC-----CTTCEEEETTC----------
T ss_pred HHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccc-----cc-----Cccceeecccc----------
Confidence 99999999999999999999999999999999999999987643211 00 00111111100
Q ss_pred ccCCCcccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhh--------hcCCCCCC
Q 045072 159 TVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLI--------DWSIPKQP 230 (556)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~--------~~~~~~~~ 230 (556)
..+.+.+...... .......++++++++|||||||.||||+++|+++......... .+.+...+
T Consensus 154 -------~~~~~~~~~~~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (562)
T 3ite_A 154 -------QSFIENLSTQDTS-DILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVG 225 (562)
T ss_dssp -------HHHHHHHHHSCCS-CCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTC
T ss_pred -------hhhhhhccccccc-ccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCc
Confidence 1111222211111 1112345678899999999999999999999999776654332 24577889
Q ss_pred EEEEecChhhhhhchhhhHhHhcCcEeEEecCCC-HHHHHHHHHHhCCcEEechhHHHHHHHcCCCCCCCCCCeEEEEeC
Q 045072 231 VYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFD-AAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAG 309 (556)
Q Consensus 231 ~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~l~~v~~~g 309 (556)
++++..|++|..++..++.++..|+++++...+. +..+++.++++++|+++++|++++.+... ...++++|.+++||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~--~~~~~~lr~~~~gG 303 (562)
T 3ite_A 226 KFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV--PEDAPHLVYLGVGG 303 (562)
T ss_dssp EEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--GGGSTTCCEEEEES
T ss_pred eEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--ccccCceEEEEEec
Confidence 9999999999888888888999999988876543 57788999999999999999999888544 35678999999999
Q ss_pred CCCcHHHHHHhHh-cCCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCC
Q 045072 310 APPPAAVLFRTES-LGFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHD 388 (556)
Q Consensus 310 ~~~~~~~~~~~~~-~~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~ 388 (556)
+++++++.+++.+ +++.+++.||+||++..++...... .....++|.|+++. +++|+|++++.+++.|
T Consensus 304 ~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~----------~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g 372 (562)
T 3ite_A 304 EKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILP----------DSDTRCIGHPLGDS-VAHVLAPGSNEHVKKG 372 (562)
T ss_dssp SCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCT----------TSCTTEEEEECTTC-EEEEECTTSSCBCCTT
T ss_pred CCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecC----------CCCCccccccCCCC-eEEEEeCCCCCCCCCC
Confidence 9999999999884 5899999999999987665543211 12235789999999 9999998889999998
Q ss_pred CCeeeEEEEecCCccccccCCCCccccCcCCCC--ceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcC
Q 045072 389 GASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDG--WFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTN 466 (556)
Q Consensus 389 ~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~--~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~ 466 (556)
+.|||+|+|++++.|||++|+.+...+. +| ||+|||+|++|+||++++.||.||+||.+|++|+|.+||+.|.++
T Consensus 373 --~~GEl~v~g~~v~~GY~~~p~~t~~~~~-~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 373 --MAGELVIEGSLVANGYLNRPDAKGFCDI-NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp --SCEEEEEESTTSCCEESSCTTCCSEEEE-TTEEEEEEEEEEEECTTSCEEEEEEC-----------------------
T ss_pred --CceEEEEeccccchhhCCCccccccccC-CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhc
Confidence 6899999999999999999998876655 55 999999999999999999999999999999999999999999998
Q ss_pred -CCccccEEEeecCCCCCeeeEEEEEecccccC-----------CCCHHHHHHHHHhcCCCCcccceeEEecCCCCC-CC
Q 045072 467 -PAVNEAAVVARPDEFWGETPCAFLSLKAELEK-----------KPTEKEIIEYCRARLPRYMVPKTVVFKEELPKT-ST 533 (556)
Q Consensus 467 -~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~-----------~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t-~~ 533 (556)
+.+.+++|++.+++..++..++.++...+... ....++|.++++++|+.|++|..++++++||+| ++
T Consensus 450 ~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~ 529 (562)
T 3ite_A 450 SPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTS 529 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCC
Confidence 88889999998888777766555554433220 122458999999999999999999999999998 89
Q ss_pred CCccHHHHHHHHHHhcccc
Q 045072 534 GKIKKFELREMAKAMGKSK 552 (556)
Q Consensus 534 GKv~r~~l~~~~~~~~~~~ 552 (556)
||++|++|++++.+....+
T Consensus 530 GKi~r~~L~~~~~~~~~~~ 548 (562)
T 3ite_A 530 AKTDAKALEHMFHTLSLGE 548 (562)
T ss_dssp -------------------
T ss_pred CcchHHHHHHHHhccCHHH
Confidence 9999999999998765544
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=3e-73 Score=600.31 Aligned_cols=509 Identities=18% Similarity=0.182 Sum_probs=411.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCEEEEC----CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhh
Q 045072 11 SSPLTPLGFLERAATVYGDCPSIIYN----NLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPF 86 (556)
Q Consensus 11 ~~~~t~~~~l~~~~~~~p~~~a~~~~----~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 86 (556)
.+.+|+.++|.++++.+|+++|+++. ++++||+||.++++++|.+|++.|+++||+|+++++|++++++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 46789999999999999999999874 47999999999999999999999999999999999999999999999999
Q ss_pred ccceEeccCCCC---CHHHHHHHHhccCCeEEEEeccchhhHHHHH-hcCCCCCCCCCeEEEcCCCCCCCCCCCccccCC
Q 045072 87 TGAILNNINTRL---DARTISVLLQHSESKLVLVDYQSRNLVVEAI-SLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDS 162 (556)
Q Consensus 87 ~G~~~v~l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (556)
+|++++|++|.. +.+++.++++.+++++++++.+....+.... ...+. ...+.....
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---------------- 148 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPK---FLKIPAIAL---------------- 148 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCE---ETTEEEEEG----------------
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccc---ccccceeec----------------
Confidence 999999999988 4578999999999999999887654432211 11100 011111110
Q ss_pred CcccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhh
Q 045072 163 NFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHAN 242 (556)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 242 (556)
+.+..... .........++++++|+|||||||.||||+++|+++...+......+++.++|++++.+|++|..
T Consensus 149 ------~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~ 221 (590)
T 3kxw_A 149 ------ESIELNRS-SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDM 221 (590)
T ss_dssp ------GGCCGGGG-GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHH
T ss_pred ------hhcccccc-ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcch
Confidence 00000000 00111235678999999999999999999999999999988888888999999999999999999
Q ss_pred hchh-hhHhHhcCcEeEEecCC----CHHHHHHHHHHhCCcEEechhHHHHHHHcCCC-----CCCCCCCeEEEEeCCCC
Q 045072 243 GWSY-PWGMAAVGGTNVCLRKF----DAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR-----SEPLRNPVHILTAGAPP 312 (556)
Q Consensus 243 g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----~~~l~~l~~v~~~g~~~ 312 (556)
|+.. ++.++..|+++++.+++ ++..+++.++++++|++.++|+++..+.+... ...++++|.+++||+++
T Consensus 222 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l 301 (590)
T 3kxw_A 222 GLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPV 301 (590)
T ss_dssp HHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCC
T ss_pred hhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCC
Confidence 9876 77888889999888764 88999999999999999999999998876432 45788999999999999
Q ss_pred cHHHHHHhH-hc------CCeEEecccccccccceeeccccccccC---------------C-ChhhhccccccCccccc
Q 045072 313 PAAVLFRTE-SL------GFLVSHGYGLTETAGLVVSCAWKNKWNR---------------L-PATERARMKSRQGVRTV 369 (556)
Q Consensus 313 ~~~~~~~~~-~~------~~~l~~~yG~tE~~~~~~~~~~~~~~~~---------------~-~~~~~~~~~~~~G~~~~ 369 (556)
++++.+++. .+ +..+++.||+||++++++.......+.. . ..........++|.|.+
T Consensus 302 ~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~ 381 (590)
T 3kxw_A 302 REETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQ 381 (590)
T ss_dssp CHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESS
T ss_pred CHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCC
Confidence 999999887 33 3479999999999987765432211100 0 00112234467899888
Q ss_pred eeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccCCCCccccCcCC------CC--ceecCceEEEecCCcEEEEc
Q 045072 370 CFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKD------DG--WFYTGDVGVIHADGYLEIKD 441 (556)
Q Consensus 370 ~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~dg~l~~~G 441 (556)
+ ++|+|++++.+++.| +.|||+|+||+++.|||++|+.+...|.. +| ||+|||+|+++ ||.+++.|
T Consensus 382 ~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~G 455 (590)
T 3kxw_A 382 E---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTG 455 (590)
T ss_dssp E---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEE
T ss_pred C---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEc
Confidence 6 788998779999998 78999999999999999999998888753 24 99999999999 99999999
Q ss_pred cCCCeEeeCcEeeChHHHHHHH-hcCCCcc--ccEEEeecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCC-Cc
Q 045072 442 RSKDVIISGGENLSSVEVESVL-YTNPAVN--EAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPR-YM 517 (556)
Q Consensus 442 R~~d~i~~~G~~v~~~~ie~~l-~~~~~i~--~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~-~~ 517 (556)
|.||+||++|++|+|.+||+.| ..+|.|. +|+|++.+++. ++.++++++..++.....+.+++.+++++++.. ++
T Consensus 456 R~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 534 (590)
T 3kxw_A 456 RIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQ 534 (590)
T ss_dssp ESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999 7889998 89999998775 677888888876542224567888888888774 66
Q ss_pred ccc-eeEEe--cCCCCCCCCCccHHHHHHHHHHhcccc
Q 045072 518 VPK-TVVFK--EELPKTSTGKIKKFELREMAKAMGKSK 552 (556)
Q Consensus 518 ~p~-~~~~v--~~lP~t~~GKv~r~~l~~~~~~~~~~~ 552 (556)
+|. .++++ ++||+|++||++|++|++++.+.....
T Consensus 535 ~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~~ 572 (590)
T 3kxw_A 535 LEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLPI 572 (590)
T ss_dssp CCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSCC
T ss_pred CceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCce
Confidence 765 45555 799999999999999999998865543
No 29
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4.1e-72 Score=637.26 Aligned_cols=493 Identities=19% Similarity=0.263 Sum_probs=416.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCEEEECCccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhh
Q 045072 6 PCTANSSPLTPLGFLERAATVYGDCPSIIYNNLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIP 85 (556)
Q Consensus 6 ~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~ 85 (556)
+...+.+..++.++|.++++++|+++|+++.++++||+||.++++++|++|++.|+++|++|+|+++|++++++++|||+
T Consensus 456 ~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lail 535 (1304)
T 2vsq_A 456 PPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVL 535 (1304)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHH
Confidence 33444556899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccccCCCcc
Q 045072 86 FTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQTVDSNFC 165 (556)
Q Consensus 86 ~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (556)
++|++++|++|.++.+++.++++++++++++++.+...... .++ .....++.+..
T Consensus 536 kaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~----~~~----~~~~~~~~~~~----------------- 590 (1304)
T 2vsq_A 536 KAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAA----ELP----YTGTTLFIDDQ----------------- 590 (1304)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTST----TCC----CCSEEEESSCG-----------------
T ss_pred HHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhh----ccC----CCCcEEEeccc-----------------
Confidence 99999999999999999999999999999999876533211 011 01111111110
Q ss_pred cccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhch
Q 045072 166 CTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWS 245 (556)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~ 245 (556)
..+ ... .........+++++|++|||||||.||||+++|+++.+. ......+++.++++++...|++|..+..
T Consensus 591 ~~~----~~~--~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~~~ 663 (1304)
T 2vsq_A 591 TRF----EEQ--ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAFTF 663 (1304)
T ss_dssp GGG----GSC--SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHHHH
T ss_pred ccc----ccc--cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHHHH
Confidence 000 000 011112356789999999999999999999999998765 4455567889999999999999998888
Q ss_pred hhhHhHhcCcEeEEecC---CCHHHHHHHHHHhCCcEEechhHHHHHHHcCCCCCCCCCCeEEEEeCCCCcHHHHHHhHh
Q 045072 246 YPWGMAAVGGTNVCLRK---FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTES 322 (556)
Q Consensus 246 ~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~l~~v~~~g~~~~~~~~~~~~~ 322 (556)
.++.++..|+++++.+. .++..+.+.++++++|+++++|++++.+.+.. ...++++|.+++|||+++.++.+++.+
T Consensus 664 ~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~-~~~~~~lr~~~~gGe~l~~~~~~~~~~ 742 (1304)
T 2vsq_A 664 DFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG-EDWMKGLRCILFGGERASVPHVRKALR 742 (1304)
T ss_dssp HHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC-SHHHHTCSEEEEESSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc-hhcCCCccEEEEecCCCCHHHHHHHHH
Confidence 88999999999999874 68999999999999999999999999997643 233568999999999999999988874
Q ss_pred -c-CCeEEecccccccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecC
Q 045072 323 -L-GFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGG 400 (556)
Q Consensus 323 -~-~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~ 400 (556)
+ ++.++|.||+||++..++....... .......++|.|++++ +++|+|+ ++.+++.| +.|||+|+|+
T Consensus 743 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~-~~~~~p~G--~~GEl~i~G~ 811 (1304)
T 2vsq_A 743 IMGPGKLINCYGPTEGTVFATAHVVHDL-------PDSISSLPIGKPISNA-SVYILNE-QSQLQPFG--AVGELCISGM 811 (1304)
T ss_dssp HHCTTCEEEEECCGGGSSCSEEEECCCC-------CSSCSSCCCBEECTTE-EEEEECT-TSCBCCTT--CCEEEEEEET
T ss_pred hCCCCEEEEeEChhHHhHHheeeeccCc-------cccCCCCCCceeeCCC-EEEEECC-CcCCCCCC--CceEEEEecc
Confidence 4 5789999999999877665432110 0112235799999999 9999998 78999988 7899999999
Q ss_pred CccccccCCCCccccCcC------CCCceecCceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEE
Q 045072 401 SMMLGYLKDPNGTRKCMK------DDGWFYTGDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAV 474 (556)
Q Consensus 401 ~~~~gy~~~~~~~~~~~~------~~~~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v 474 (556)
++++||+++|+.+..+|. +++||+|||+|++++||.++++||.||+||++|++|+|.|||+.|.++|+|.+++|
T Consensus 812 ~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V 891 (1304)
T 2vsq_A 812 GVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVV 891 (1304)
T ss_dssp TCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEE
T ss_pred ccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEE
Confidence 999999999999988874 34699999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHH
Q 045072 475 VARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAK 546 (556)
Q Consensus 475 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~ 546 (556)
++.+++..+..++++|+.... .+.+++.++++++|+.|++|..++++++||+|++||++|++|++...
T Consensus 892 ~~~~~~~~~~~l~a~vv~~~~----~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 892 VADRHESGDASINAYLVNRTQ----LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp EEECCSSSCCEEEEEEECSSS----SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCG
T ss_pred EEEecCCCCEEEEEEEeCCCC----CCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcch
Confidence 999888878889999987653 57889999999999999999999999999999999999999876543
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=6.4e-72 Score=588.94 Aligned_cols=506 Identities=20% Similarity=0.225 Sum_probs=410.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCEEEEC---CccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhh
Q 045072 10 NSSPLTPLGFLERAATVYGDCPSIIYN---NLIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPF 86 (556)
Q Consensus 10 ~~~~~t~~~~l~~~~~~~p~~~a~~~~---~~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~ 86 (556)
.....|+.++|+++++.+|+.+++... ++++||+||.++++++|.+|+++|+++||+|+++++|++++++++|||++
T Consensus 17 ~~~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (576)
T 3gqw_A 17 YADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQY 96 (576)
T ss_dssp CSCCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 344669999999999999998888653 37899999999999999999999999999999999999999999999999
Q ss_pred ccceEeccCCCCC-------HHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCCCCCCccc
Q 045072 87 TGAILNNINTRLD-------ARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDNDNKSSQT 159 (556)
Q Consensus 87 ~G~~~v~l~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (556)
+|++++|+++.++ .+++.+++++++++++|++.+....+.......+. +.....
T Consensus 97 ~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~------~~~~~~------------- 157 (576)
T 3gqw_A 97 AGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPE------LHVLSH------------- 157 (576)
T ss_dssp TTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTT------CEEEEH-------------
T ss_pred hCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCc------ceecch-------------
Confidence 9999999999998 79999999999999999999887776665443321 111110
Q ss_pred cCCCcccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhh-cCCCCCCEEEEecCh
Q 045072 160 VDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLID-WSIPKQPVYLWTLPM 238 (556)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~pl 238 (556)
.+.+..... ........++++++++|||||||.||||+++|+++..++...... +++.++|++++.+|+
T Consensus 158 -------~~~~~~~~~---~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 227 (576)
T 3gqw_A 158 -------AWFKALPEA---DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPF 227 (576)
T ss_dssp -------HHHHTSCCC---CCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCT
T ss_pred -------hhhhccccc---ccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCc
Confidence 000000111 111123457899999999999999999999999998877766544 788999999999999
Q ss_pred hhhhhchh-hhHhHhcCcEeEEecC----CCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC-----CCCCCCCeEEEEe
Q 045072 239 FHANGWSY-PWGMAAVGGTNVCLRK----FDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR-----SEPLRNPVHILTA 308 (556)
Q Consensus 239 ~~~~g~~~-~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-----~~~l~~l~~v~~~ 308 (556)
+|..|+.. ++..+..|+++++... +++..+++.++++++|+++++|+++..+.+... ...++++|.+++|
T Consensus 228 ~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~g 307 (576)
T 3gqw_A 228 YHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIG 307 (576)
T ss_dssp TSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEEC
T ss_pred cccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhcc
Confidence 99999876 5566677777777653 588999999999999999999999988876654 4568899999999
Q ss_pred CCCCcHHHHHHhH-hc------CCeEEecccccccccceeeccccccccCC---------------C--hhhhccccccC
Q 045072 309 GAPPPAAVLFRTE-SL------GFLVSHGYGLTETAGLVVSCAWKNKWNRL---------------P--ATERARMKSRQ 364 (556)
Q Consensus 309 g~~~~~~~~~~~~-~~------~~~l~~~yG~tE~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~~~ 364 (556)
|+++++++.+++. .+ ++.+++.||+||++.+++........... + .........++
T Consensus 308 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (576)
T 3gqw_A 308 AEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNC 387 (576)
T ss_dssp SSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBC
T ss_pred CccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeec
Confidence 9999999999887 33 67899999999999887665432211000 0 00001112378
Q ss_pred ccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccCCCCccccCcCCCCceecCceEEEecCCcEEEEccCC
Q 045072 365 GVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHADGYLEIKDRSK 444 (556)
Q Consensus 365 G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~l~~~GR~~ 444 (556)
|.|+++. +++|+|+ +|.+++.| +.|||+|+|+++++|||++++.+...+. +|||+|||+|++ +||++++.||.|
T Consensus 388 G~p~~~~-~~~i~d~-~g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~~~~~~~-~g~~~TGDl~~~-~dG~l~~~GR~d 461 (576)
T 3gqw_A 388 GKALPEH-GIEIRNE-AGMPVAER--VVGHICISGPSLMSGYFGDQVSQDEIAA-TGWLDTGDLGYL-LDGYLYVTGRIK 461 (576)
T ss_dssp CEECTTC-EEEEECT-TSCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHH-HSCEEEEEEEEE-ETTEEEEEEETT
T ss_pred CCcCCCC-eEEEECC-CCCCCCCC--CeEEEEEeCccccccccCCccccccccC-CCeeeccceEEE-ECCEEEEEecCc
Confidence 9999999 9999996 89999998 7899999999999999999987766555 899999999999 799999999999
Q ss_pred CeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcC-CCCcccceeE
Q 045072 445 DVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARL-PRYMVPKTVV 523 (556)
Q Consensus 445 d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l-~~~~~p~~~~ 523 (556)
|+||++|++|+|.+||++|.+||+|.+++|++...+.. ..++.+....... ...+++.+.+++++ +.+++|..+.
T Consensus 462 d~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~--~~~~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~p~~i~ 537 (576)
T 3gqw_A 462 DLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQE--KIILQIQCRISDE--ERRGQLIHALAARIQSEFGVTAAID 537 (576)
T ss_dssp TCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTTS--CEEEEEECCCCCH--HHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred ceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCCc--cEEEEEEEecCch--hHHHHHHHHHHHHHHHHhCCceeEE
Confidence 99999999999999999999999999999998877643 3444444433322 34667888888887 6788999888
Q ss_pred Eec--CCCCCCCCCccHHHHHHHHHHhcccccc
Q 045072 524 FKE--ELPKTSTGKIKKFELREMAKAMGKSKVS 554 (556)
Q Consensus 524 ~v~--~lP~t~~GKv~r~~l~~~~~~~~~~~~~ 554 (556)
+++ +||+|++||++|++|++++.+.....+.
T Consensus 538 ~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~~~~ 570 (576)
T 3gqw_A 538 LLPPHSIPRTSSGKPARAEAKKRYQKAYAASLN 570 (576)
T ss_dssp EECSSCSCBCTTSSBCHHHHHHHHHHHHTCC--
T ss_pred EECCCCcCcCCCccchHHHHHHHHHHHhhhccc
Confidence 887 8999999999999999999988777654
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.1e-59 Score=482.30 Aligned_cols=405 Identities=20% Similarity=0.256 Sum_probs=313.3
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhcCCCCEEEECC---------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChH
Q 045072 5 KPCTANSSPLTPLGFLERAATVYGDCPSIIYNN---------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIP 75 (556)
Q Consensus 5 ~~~~~~~~~~t~~~~l~~~~~~~p~~~a~~~~~---------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~ 75 (556)
.+.-.+++.+|+.++|.++++++|+++|+++.+ +++||+||.++++++|.+|++.|+ +||+|+|+++|++
T Consensus 15 ~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~ 93 (480)
T 3t5a_A 15 VPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGL 93 (480)
T ss_dssp ---------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSH
T ss_pred CcccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcH
Confidence 445566788999999999999999999999865 789999999999999999999996 9999999999999
Q ss_pred HHHHHHHHhhhccceEeccCC---CCCHHHHHHHHhccCCeEEEEeccchhhHHHHHhcCCCCCCCCCeEEEcCCCCCCC
Q 045072 76 AMYEAHFAIPFTGAILNNINT---RLDARTISVLLQHSESKLVLVDYQSRNLVVEAISLFPSDIKCPPLVLIADHTDHDN 152 (556)
Q Consensus 76 ~~~~~~lA~~~~G~~~v~l~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (556)
++++++|||+++|++++|+++ .++.+++.+++++++++++|++.+....+........... ...++..+ ..
T Consensus 94 e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~---- 167 (480)
T 3t5a_A 94 EYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGES-PPSIIEVD-LL---- 167 (480)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-------CCEEEEGG-GS----
T ss_pred HHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhcccccc-ccceeEec-cc----
Confidence 999999999999999999999 7789999999999999999999987766554332221100 01111111 10
Q ss_pred CCCCccccCCCcccccccccccCCCCCCCCCCCCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCC----
Q 045072 153 DNKSSQTVDSNFCCTYESLVTKGDPNFKWIRPQNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPK---- 228 (556)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~---- 228 (556)
..............++++++|+|||||||.||||+++|+++..++......+.+..
T Consensus 168 --------------------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~ 227 (480)
T 3t5a_A 168 --------------------DLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIP 227 (480)
T ss_dssp --------------------CTTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCC
T ss_pred --------------------ccccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCC
Confidence 00001111112356779999999999999999999999999888877777777766
Q ss_pred --CCEEEEecChhhhhhchh-hhHhHhcCcEeEEecCC----CHHHHHHHHHHhCCcEEechhHHHHHHHcC------CC
Q 045072 229 --QPVYLWTLPMFHANGWSY-PWGMAAVGGTNVCLRKF----DAAVIYKMIRQHGVTHMCGAPVVLNMISNL------PR 295 (556)
Q Consensus 229 --~~~~~~~~pl~~~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~------~~ 295 (556)
++++++.+|++|.+|+.. ++.++..|+++++.++. ++..+++.++++++| +..+|+++..++.. ..
T Consensus 228 ~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~ 306 (480)
T 3t5a_A 228 PPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMA 306 (480)
T ss_dssp CTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGT
T ss_pred CCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccc
Confidence 899999999999999764 77888999999988753 899999999999999 78888888777642 12
Q ss_pred CCCCCCCeEEEEeCCCCcHHHHHHhH-hc------CCeEEecccccccccceeeccccccccC--CChh-----------
Q 045072 296 SEPLRNPVHILTAGAPPPAAVLFRTE-SL------GFLVSHGYGLTETAGLVVSCAWKNKWNR--LPAT----------- 355 (556)
Q Consensus 296 ~~~l~~l~~v~~~g~~~~~~~~~~~~-~~------~~~l~~~yG~tE~~~~~~~~~~~~~~~~--~~~~----------- 355 (556)
...++++|.+++||+++++++.+++. .+ ++.+++.||+||++.+++.......... +...
T Consensus 307 ~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 386 (480)
T 3t5a_A 307 GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCA 386 (480)
T ss_dssp TCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCC
T ss_pred ccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecC
Confidence 56788999999999999999999987 44 2479999999999987766543211000 0000
Q ss_pred -hhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccCCCCccccCcC-----------CCCce
Q 045072 356 -ERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMK-----------DDGWF 423 (556)
Q Consensus 356 -~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~-----------~~~~~ 423 (556)
.......++|.|++ . +++|+|++++.+++.| +.|||+|+|++++.|||++|+.+...|. ++|||
T Consensus 387 ~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~ 462 (480)
T 3t5a_A 387 GGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462 (480)
T ss_dssp SSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBE
T ss_pred CCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCee
Confidence 00233458899999 7 9999999789999998 7899999999999999999999888874 47899
Q ss_pred ecCceEEEecCCcEEEEcc
Q 045072 424 YTGDVGVIHADGYLEIKDR 442 (556)
Q Consensus 424 ~TGD~~~~~~dg~l~~~GR 442 (556)
+|||+|+++ ||+|++.||
T Consensus 463 ~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 463 RTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEEEEEEE-TTEEEECC-
T ss_pred eccceeeEE-CCEEEEeCC
Confidence 999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.2e-53 Score=419.03 Aligned_cols=316 Identities=19% Similarity=0.158 Sum_probs=267.8
Q ss_pred CCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhhhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecCCCHH
Q 045072 187 EWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRKFDAA 266 (556)
Q Consensus 187 ~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~~~~~ 266 (556)
.+++++|+|||||||.||||+++|+++.+++......+++.++|++++++|++|.+|+..++.++..|+++++..+. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 36899999999999999999999999999888888889999999999999999999999889999999999887642 1
Q ss_pred HHHHHHHHhCCcEEechhHHHHHHHcCCC-CCCCCCCeEEEEeCCCCcHHHHHHhHhcCCeEEecccccccccceeeccc
Q 045072 267 VIYKMIRQHGVTHMCGAPVVLNMISNLPR-SEPLRNPVHILTAGAPPPAAVLFRTESLGFLVSHGYGLTETAGLVVSCAW 345 (556)
Q Consensus 267 ~~~~~i~~~~~t~~~~~p~~~~~l~~~~~-~~~l~~l~~v~~~g~~~~~~~~~~~~~~~~~l~~~yG~tE~~~~~~~~~~ 345 (556)
..++.++++++|+++++|+++..+++... ...++++|.+++||+++++++.+++.++++++++.||+||+++.++....
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~~~ 193 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALKAL 193 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEEEC
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccccCceEEeccccccccceeecccc
Confidence 23667889999999999999999987765 45688999999999999999999999889999999999999887665432
Q ss_pred cccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccCCCCccccCcCCCCceec
Q 045072 346 KNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYT 425 (556)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~T 425 (556)
+. ...+.+|.+.+++ .+.+.+ .|||+++|+.. .+|||+|
T Consensus 194 ~~-----------~~~g~~~~~~pgv-~~~~~~-------------~Gel~~~g~~~----------------~~g~~~T 232 (358)
T 4gs5_A 194 NG-----------PEASELYVFLPGI-QYGVDE-------------RGCLHISGAVT----------------NGQTVQT 232 (358)
T ss_dssp SS-----------TTCCSCEEECTTC-EEEECT-------------TSEEEEESGGG----------------TTCCEEE
T ss_pred cc-----------cccceeeccCCCe-EEEecC-------------cCceEEecccc----------------cCcceec
Confidence 11 1234567777766 555433 39999987532 2789999
Q ss_pred CceEEEecCCcEEEEccCCCeEeeCcEeeChHHHHHHHh---cCCCccccEEE-eecCCCCCeeeEEEEEecccccCCCC
Q 045072 426 GDVGVIHADGYLEIKDRSKDVIISGGENLSSVEVESVLY---TNPAVNEAAVV-ARPDEFWGETPCAFLSLKAELEKKPT 501 (556)
Q Consensus 426 GD~~~~~~dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~---~~~~i~~~~v~-~~~~~~~g~~~~~~v~~~~~~~~~~~ 501 (556)
||+|++|+|| ++++||.||+||.+|++|+|.+||+.|. +||.|.+++|+ +.+++..|+.++++|+..... ..
T Consensus 233 GDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~---~~ 308 (358)
T 4gs5_A 233 NDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE---AL 308 (358)
T ss_dssp EEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH---HH
T ss_pred CCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCC---cC
Confidence 9999999988 6677999999999999999999998774 57999999887 567788888898888765543 35
Q ss_pred HHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCccHHHHHHHHHHhc
Q 045072 502 EKEIIEYCRARLPRYMVPKTVVFKEELPKTSTGKIKKFELREMAKAMG 549 (556)
Q Consensus 502 ~~~i~~~l~~~l~~~~~p~~~~~v~~lP~t~~GKv~r~~l~~~~~~~~ 549 (556)
.+++.++++++|+.|++|+.++++++||+|++||++|++|++++.+..
T Consensus 309 ~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 309 TERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp HHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC---
T ss_pred HHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhc
Confidence 678999999999999999999999999999999999999999887653
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.7e-47 Score=386.36 Aligned_cols=325 Identities=20% Similarity=0.229 Sum_probs=262.5
Q ss_pred CCC-CCcEEEEeccCCCCCCceEEEchHHHHHHHhhh---hhhcCCCCCCEEEEecChhhhhhc-hhhhHhHhcCcEeEE
Q 045072 185 QNE-WDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPMFHANGW-SYPWGMAAVGGTNVC 259 (556)
Q Consensus 185 ~~~-~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~-~~~~~~~~~g~~~~~ 259 (556)
.++ +++++++|||||||.||+|.++|+++....... ...+++.++|+++..+|+.|..+. ...+.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 344 789999999999999999999999986655444 334578999999999998655554 456778889999998
Q ss_pred ecCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC----CCCCCCCeEEEEeCCCCcHHHHHHhH-hcCCeEEeccccc
Q 045072 260 LRKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR----SEPLRNPVHILTAGAPPPAAVLFRTE-SLGFLVSHGYGLT 334 (556)
Q Consensus 260 ~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~----~~~l~~l~~v~~~g~~~~~~~~~~~~-~~~~~l~~~yG~t 334 (556)
.+..++..+++.++++++|+++++|+++..|.+... ...++++|.+++||+++++++.++++ .+++.+++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 888899999999999999999999999999986543 22378999999999999999999998 4599999999999
Q ss_pred ccccceeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccCCCCccc
Q 045072 335 ETAGLVVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTR 414 (556)
Q Consensus 335 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~~ 414 (556)
|+++.+...... .....|.+.++. .++|+|++++.+++.| +.|||+|+|.. .
T Consensus 242 E~~~~~~~~~~~-------------~~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~~------------~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQ-------------EQNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTLD------------R 293 (436)
T ss_dssp GGTEEEEEEECT-------------TCSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEESS------------C
T ss_pred hhcCCeeEEecC-------------CCCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEeccC------------c
Confidence 996553322110 011245556677 9999997799999998 68999999842 2
Q ss_pred cCcCCCCceecCceEEEecCC------c---EEEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCee
Q 045072 415 KCMKDDGWFYTGDVGVIHADG------Y---LEIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGET 485 (556)
Q Consensus 415 ~~~~~~~~~~TGD~~~~~~dg------~---l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~ 485 (556)
..+. ++||+|||+|+++++| + +++.||.+|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.
T Consensus 294 ~~~~-~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~ 372 (436)
T 3qov_A 294 EMMP-LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDE 372 (436)
T ss_dssp CSSC-CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEE
T ss_pred CCce-EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcE
Confidence 2333 8899999999999998 5 6999999999999999999999999999999999999999998877889
Q ss_pred eEEEEEecccccCC--CCHHHHHHHHHhcCCCC-cccceeEEec--CCCCCCCCCccHHH
Q 045072 486 PCAFLSLKAELEKK--PTEKEIIEYCRARLPRY-MVPKTVVFKE--ELPKTSTGKIKKFE 540 (556)
Q Consensus 486 ~~~~v~~~~~~~~~--~~~~~i~~~l~~~l~~~-~~p~~~~~v~--~lP~t~~GKv~r~~ 540 (556)
++++|+.. +...+ .+.+++.++++++++.+ ++|..+.+++ +||+|+ ||++|..
T Consensus 373 l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 373 MIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 99999988 43310 12678888999888888 8999999999 999999 9999853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.2e-47 Score=387.75 Aligned_cols=328 Identities=18% Similarity=0.164 Sum_probs=268.0
Q ss_pred CCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhh---hhcCCCCCCEEEEecCh-hhhhhchhhhHhHhcCcEeEEe
Q 045072 185 QNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSL---IDWSIPKQPVYLWTLPM-FHANGWSYPWGMAAVGGTNVCL 260 (556)
Q Consensus 185 ~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 260 (556)
.+++++++++|||||||.||+|.++|+++........ ..+++.++|+++..+|+ +|..++...+.++..|++++..
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4567999999999999999999999999876543332 35678999999999998 5676776778888899999888
Q ss_pred cCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CC--CCCCCeEEEEeCCCCcHHHHHHhH-hcCCeEEecccccc
Q 045072 261 RKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SE--PLRNPVHILTAGAPPPAAVLFRTE-SLGFLVSHGYGLTE 335 (556)
Q Consensus 261 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~--~l~~l~~v~~~g~~~~~~~~~~~~-~~~~~l~~~yG~tE 335 (556)
+.+++..+++.++++++|+++++|+++..|.+... .. .++++|.+++||+++++++.++++ .+++.+++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 88899999999999999999999999999876532 12 247899999999999999999998 56999999999999
Q ss_pred cccc--eeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccCCCCcc
Q 045072 336 TAGL--VVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGT 413 (556)
Q Consensus 336 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~ 413 (556)
+++. ++.+... ....+.+.++. .++|+|++++.+++.| +.|||+|+|. +
T Consensus 249 ~~g~~~~~~~~~~--------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t 299 (443)
T 2y4o_A 249 VMGPGVACECVET--------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------T 299 (443)
T ss_dssp TTEEEEEEECTTT--------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hcCCeEEeccCCC--------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------C
Confidence 8543 2222100 00133345666 9999998789999988 6899999983 2
Q ss_pred ccCcCCCCceecCceEEEecC-CcE-----EEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCeeeE
Q 045072 414 RKCMKDDGWFYTGDVGVIHAD-GYL-----EIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPC 487 (556)
Q Consensus 414 ~~~~~~~~~~~TGD~~~~~~d-g~l-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~ 487 (556)
...|. ++||+|||+|+++++ |++ ++.||.+|+|+.+|++|+|.+||++|.++|+|.+++|++.+++..++.++
T Consensus 300 ~~~~p-~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~ 378 (443)
T 2y4o_A 300 KEAMP-VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLD 378 (443)
T ss_dssp CSSSC-CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEE
T ss_pred cccCh-hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEE
Confidence 22333 789999999999999 987 89999999999999999999999999999999999999988776678889
Q ss_pred EEEEecc--ccc-CCCCHHHHHHHHHhcCCCC-cccceeEEe--cCCCCCCCCCccHHHHH
Q 045072 488 AFLSLKA--ELE-KKPTEKEIIEYCRARLPRY-MVPKTVVFK--EELPKTSTGKIKKFELR 542 (556)
Q Consensus 488 ~~v~~~~--~~~-~~~~~~~i~~~l~~~l~~~-~~p~~~~~v--~~lP~t~~GKv~r~~l~ 542 (556)
++|+..+ +.. ...+.+++.++++++++.+ .+|..+.++ ++||+|++||++|...+
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 9998876 321 1134578899999988876 488888887 59999999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.6e-46 Score=380.85 Aligned_cols=326 Identities=17% Similarity=0.124 Sum_probs=267.6
Q ss_pred CCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhh---hhhcCCCCCCEEEEecCh-hhhhhchhhhHhHhcCcEeEEe
Q 045072 185 QNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPM-FHANGWSYPWGMAAVGGTNVCL 260 (556)
Q Consensus 185 ~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 260 (556)
.+++++++++|||||||.||+|+++|+++....... ...+++.++|++++.+|+ +|..++...+.++..|++++..
T Consensus 87 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 166 (437)
T 2y27_A 87 VPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPF 166 (437)
T ss_dssp SCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECC
T ss_pred CChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeC
Confidence 456799999999999999999999999987654332 235678999999999998 6777777778888999999888
Q ss_pred cCCCHHHHHHHHHHhCCcEEechhHHHHHHHcCCC--CC--CCCCCeEEEEeCCCCcHHHHHHhH-hcCCeEEecccccc
Q 045072 261 RKFDAAVIYKMIRQHGVTHMCGAPVVLNMISNLPR--SE--PLRNPVHILTAGAPPPAAVLFRTE-SLGFLVSHGYGLTE 335 (556)
Q Consensus 261 ~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~--~l~~l~~v~~~g~~~~~~~~~~~~-~~~~~l~~~yG~tE 335 (556)
+.+++..+++.++++++|+++++|+++..|.+... .. .++++|.+++||+++++++.++++ .+++.+++.||+||
T Consensus 167 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 246 (437)
T 2y27_A 167 GGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSE 246 (437)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchh
Confidence 88899999999999999999999999999876532 12 247899999999999999999997 56999999999999
Q ss_pred cccc-eeeccccccccCCChhhhccccccCccccceeeeeEEecCCCCceecCCCCeeeEEEEecCCccccccCCCCccc
Q 045072 336 TAGL-VVSCAWKNKWNRLPATERARMKSRQGVRTVCFTEIDVIDSESGLSVSHDGASLGEIVFRGGSMMLGYLKDPNGTR 414 (556)
Q Consensus 336 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~~ 414 (556)
+++. ++... .. . ....+.+.++. .++|+|++++.+++.| +.|||+++|. +.
T Consensus 247 ~~g~~~~~~~-~~-------~-----~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t~ 298 (437)
T 2y27_A 247 VMGPGVASEC-VE-------T-----KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------TK 298 (437)
T ss_dssp TTEEEEEECC-TT-------T-----CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SC
T ss_pred hcCCeeEEec-CC-------C-----CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------Cc
Confidence 8543 22211 00 0 01234455666 9999998789999988 6899999983 22
Q ss_pred cCcCCCCceecCceEEEec-CCcE-----EEEccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCeeeEE
Q 045072 415 KCMKDDGWFYTGDVGVIHA-DGYL-----EIKDRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCA 488 (556)
Q Consensus 415 ~~~~~~~~~~TGD~~~~~~-dg~l-----~~~GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~ 488 (556)
..+. ++||+|||+|++++ +|++ ++.||.+|+|+.+|++|+|.+||++|.++|+|.+++|++.+++..++.+++
T Consensus 299 ~~~~-~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 299 EALP-IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp SSSC-CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred CCch-hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 2333 78999999999998 6985 899999999999999999999999999999999999999887767788999
Q ss_pred EEEecccccCC-CCHHHHHHHHHhcCCCC-cccceeEEe--cCCCCCCCCCccHHH
Q 045072 489 FLSLKAELEKK-PTEKEIIEYCRARLPRY-MVPKTVVFK--EELPKTSTGKIKKFE 540 (556)
Q Consensus 489 ~v~~~~~~~~~-~~~~~i~~~l~~~l~~~-~~p~~~~~v--~~lP~t~~GKv~r~~ 540 (556)
+|++.++.... .+.+++.++++++++.+ .+|..+.++ ++||+|+ ||++|..
T Consensus 378 ~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 99887653211 23578899999999887 488888888 5999999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=7.1e-29 Score=245.35 Aligned_cols=234 Identities=17% Similarity=0.110 Sum_probs=177.9
Q ss_pred CCCCCcEEEEeccCCCCCCceEEEchHHHHHHHhh---hhhhcCCCCCCEEEEecCh-hhhhhchhhhHhHhcCcEeEEe
Q 045072 185 QNEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVD---SLIDWSIPKQPVYLWTLPM-FHANGWSYPWGMAAVGGTNVCL 260 (556)
Q Consensus 185 ~~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~---~~~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~ 260 (556)
.+++++++++|||||||.||+|.++|+++...... .....++.++|++++.+|+ +|..|+...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 35678999999999999999999999999877763 3455678899999999999 99999888777788888 6666
Q ss_pred cCCCHH-----------------------HHHHHHHHhCCcEEechhHHHHHHHcCCC--CCCCCCCeEEEEeCCCCcHH
Q 045072 261 RKFDAA-----------------------VIYKMIRQHGVTHMCGAPVVLNMISNLPR--SEPLRNPVHILTAGAPPPAA 315 (556)
Q Consensus 261 ~~~~~~-----------------------~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~~~l~~l~~v~~~g~~~~~~ 315 (556)
..+++. .+++.++++++|+++++|+++..|.+... ...++++|.+++||++++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~ 246 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLD 246 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCHH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCHH
Confidence 677777 88889999999999999999999987643 23467899999999999999
Q ss_pred HHHHhH-hc--CCeEEecccccccccceeeccccccccCCChhhhccccccCccc------cceeeeeEEecCCCCceec
Q 045072 316 VLFRTE-SL--GFLVSHGYGLTETAGLVVSCAWKNKWNRLPATERARMKSRQGVR------TVCFTEIDVIDSESGLSVS 386 (556)
Q Consensus 316 ~~~~~~-~~--~~~l~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~~i~d~~~~~~~~ 386 (556)
+.+++. +. ++.+++.||+||+++++..+.. .++|.+ .+++ +++|+|++++.+++
T Consensus 247 ~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~vp 309 (369)
T 3hgu_A 247 EIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTVE 309 (369)
T ss_dssp HHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBCC
T ss_pred HHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCCC
Confidence 999988 55 8999999999999877654321 147888 8887 99999998899999
Q ss_pred CCCCeeeEEEEecCCccccccCCCCccccCcCCCCceecCceEEEecC--C-------cEEEEccCCCeEeeCcE
Q 045072 387 HDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHAD--G-------YLEIKDRSKDVIISGGE 452 (556)
Q Consensus 387 ~~~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d--g-------~l~~~GR~~d~i~~~G~ 452 (556)
.| +.|||+|++..... + -.+|+|||++...+. | .+..++|.++..++.|.
T Consensus 310 ~G--~~GEl~vt~l~~~~------------~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 310 YG--ERGNVIVTHLSPWA------------F--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp TT--CEEEEEEEEEETTE------------E--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CC--CceEEEEEEcCccc------------c--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 98 78999999732110 0 114899999987643 2 24566777777776663
No 37
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.49 E-value=2.6e-14 Score=112.95 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=71.9
Q ss_pred ccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCeeeEEEEEecccccC--CCCHHHHHHHHHhcCC-CCc
Q 045072 441 DRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEK--KPTEKEIIEYCRARLP-RYM 517 (556)
Q Consensus 441 GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~~~~~~i~~~l~~~l~-~~~ 517 (556)
||.+|+|+++|.+|+|.+||++|.++|+|.++++++.+++.+++.++++|++ ++... ..+.+++.+.+++++. .+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999999998888877778889999988 54311 0123445555554443 234
Q ss_pred ccceeEEec--CCCCCCCCCccHH
Q 045072 518 VPKTVVFKE--ELPKTSTGKIKKF 539 (556)
Q Consensus 518 ~p~~~~~v~--~lP~t~~GKv~r~ 539 (556)
++..+.+++ +||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 445788887 89999 9999874
No 38
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.48 E-value=2.1e-14 Score=113.78 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=72.8
Q ss_pred ccCCCeEeeCcEeeChHHHHHHHhcCCCccccEEEeecCCCCCeeeEEEEEecccccCC-CCHHHHHHHHHhcCCCC-cc
Q 045072 441 DRSKDVIISGGENLSSVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKK-PTEKEIIEYCRARLPRY-MV 518 (556)
Q Consensus 441 GR~~d~i~~~G~~v~~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~-~~~~~i~~~l~~~l~~~-~~ 518 (556)
.|-||+|+++|.+|+|.+||++|.++|+|.++++++.+++.+++.+.++|+..++.... ...+++.+.+++++..+ .+
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv 80 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILV 80 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCC
Confidence 48899999999999999999999999999999999999998899999999887765421 22344555555544322 34
Q ss_pred cceeEEec--CCCCCCCCCccH
Q 045072 519 PKTVVFKE--ELPKTSTGKIKK 538 (556)
Q Consensus 519 p~~~~~v~--~lP~t~~GKv~r 538 (556)
+..+.+++ +|||| +||++|
T Consensus 81 ~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 81 TPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp CCEEEEECTTCSCCC----CCC
T ss_pred ccceEEEcCCeecCC-CCCcch
Confidence 55566664 89998 799987
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.69 E-value=1.6e-07 Score=95.19 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=49.7
Q ss_pred eeeEEEEecCCccccccCCCCccccCcCCCCceecCceEEEec----CCcEEEEccCCCeEeeCcEeeChHHHHHHHhcC
Q 045072 391 SLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHA----DGYLEIKDRSKDVIISGGENLSSVEVESVLYTN 466 (556)
Q Consensus 391 ~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~l~~~GR~~d~i~~~G~~v~~~~ie~~l~~~ 466 (556)
+.+||+|+..+ |.| .|++||+++++. ..++.|.||.++++.+.|++++..+||+++.+.
T Consensus 385 ~~YelViTt~~---GL~--------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 385 CTYEPVVTNFA---GLY--------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp CEEEEEEECSS---SCC--------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred ceEEEEEeecc---cee--------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 67999999642 222 299999999875 467999999999999999999999999998853
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.65 E-value=1.1e-07 Score=96.33 Aligned_cols=63 Identities=13% Similarity=0.198 Sum_probs=51.4
Q ss_pred eecCCCCeeeEEEEecCCccccccCCCCccccCcCCCCceecCceEEEec----CCcEEEEccCCCeEeeCcEeeChHHH
Q 045072 384 SVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHA----DGYLEIKDRSKDVIISGGENLSSVEV 459 (556)
Q Consensus 384 ~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~l~~~GR~~d~i~~~G~~v~~~~i 459 (556)
++..| +.+||+|+... |.|. |++||+++++. ..++.|.||.++++.+.|+++++.+|
T Consensus 392 eVe~G--~~YelViTt~~---GL~R--------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v 452 (609)
T 4b2g_A 392 HVEVG--KEYELVITTYA---GLYR--------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAEL 452 (609)
T ss_dssp GCCTT--CEEEEEEECTT---SCCS--------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHH
T ss_pred HcCCC--CeEEEehhhhh---hhhh--------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHH
Confidence 34445 67999998642 3332 99999999873 46899999999999999999999999
Q ss_pred HHHHhc
Q 045072 460 ESVLYT 465 (556)
Q Consensus 460 e~~l~~ 465 (556)
|+++.+
T Consensus 453 ~~av~~ 458 (609)
T 4b2g_A 453 QKAVDN 458 (609)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998884
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.55 E-value=1.7e-06 Score=87.48 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=62.2
Q ss_pred eecCCCCeeeEEEEecCCccccccCCCCccccCcCCCCceecCceEEEecC----CcEEEEccCCCeEeeCcEeeChHHH
Q 045072 384 SVSHDGASLGEIVFRGGSMMLGYLKDPNGTRKCMKDDGWFYTGDVGVIHAD----GYLEIKDRSKDVIISGGENLSSVEV 459 (556)
Q Consensus 384 ~~~~~~~~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d----g~l~~~GR~~d~i~~~G~~v~~~~i 459 (556)
++..| +.+||+|+... |.| .|++||+++++.- .++.|.||.++++.+.|++++..+|
T Consensus 387 eve~G--~~YelviTt~~---GL~--------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v 447 (581)
T 4epl_A 387 QVKIG--EEYEVVITNYA---GLY--------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDL 447 (581)
T ss_dssp GCCTT--CEEEEEEESTT---SCS--------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHH
T ss_pred HcCCC--CeEEEEEeecc---cee--------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHH
Confidence 34445 67999999642 222 2999999998742 5799999999999999999999999
Q ss_pred HHHHhcC------C--CccccEEEeecCCCCCeeeEEEEEec
Q 045072 460 ESVLYTN------P--AVNEAAVVARPDEFWGETPCAFLSLK 493 (556)
Q Consensus 460 e~~l~~~------~--~i~~~~v~~~~~~~~g~~~~~~v~~~ 493 (556)
|.++.+. . .|.+..+........+. -+.+.++.
T Consensus 448 ~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~h-yv~~wE~~ 488 (581)
T 4epl_A 448 QLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGH-YAIFWEIS 488 (581)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCE-EEEEEEES
T ss_pred HHHHHHHHHhhcccCCeEEEEEEecCCCCCCCc-EEEEEeec
Confidence 9988752 2 35566665533322233 33334553
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.85 E-value=0.95 Score=44.63 Aligned_cols=92 Identities=8% Similarity=0.035 Sum_probs=75.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--hHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEE
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN--IPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLV 115 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (556)
-.+|.+.+...+..++..+...++.++|++...+|- ....+..+++++..|+..++.++ .+.+.+...+++.+++++
T Consensus 104 v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~ 182 (436)
T 3qov_A 104 IVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA-GNSKRQIKFISDFKTTAL 182 (436)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHTCCEE
T ss_pred EEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHHCCCEE
Confidence 348999999988888888888999999999998874 34455667888999999888755 477889999999999999
Q ss_pred EEeccchhhHHHHHh
Q 045072 116 LVDYQSRNLVVEAIS 130 (556)
Q Consensus 116 i~~~~~~~~~~~~~~ 130 (556)
+..+.....+.....
T Consensus 183 ~~~P~~~~~l~~~~~ 197 (436)
T 3qov_A 183 HAIPSYAIRLAEVFQ 197 (436)
T ss_dssp ECCHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHH
Confidence 998887776665543
No 43
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.78 E-value=1.1 Score=44.23 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=73.6
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--hHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEE
Q 045072 39 IYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPN--IPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVL 116 (556)
Q Consensus 39 ~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~--~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (556)
.+|.+.+...+..++..+...|+.++|++...+|. ....+...++++..|+..+++++ .+.+.+...+++.++++++
T Consensus 109 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~ 187 (437)
T 2y27_A 109 GYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGG-GQTEKQVQLIQDFRPDIIM 187 (437)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCS-CCHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCC-CCHHHHHHHHHHhCCCEEE
Confidence 48999999888888888888899999999998885 34445567888999999988765 4788999999999999999
Q ss_pred EeccchhhHHHHH
Q 045072 117 VDYQSRNLVVEAI 129 (556)
Q Consensus 117 ~~~~~~~~~~~~~ 129 (556)
..+.....+.+..
T Consensus 188 ~~Ps~~~~l~~~~ 200 (437)
T 2y27_A 188 VTPSYMLSIADEI 200 (437)
T ss_dssp ECHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHH
Confidence 9888777665543
No 44
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=92.46 E-value=1.2 Score=43.96 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=73.6
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCh--HHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEE
Q 045072 39 IYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNI--PAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVL 116 (556)
Q Consensus 39 ~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (556)
.+|.+.+...+..++..+...|+.++|++...+|-+ ...+...++++..|+..+++++ .+.+.+...+++.++++++
T Consensus 111 ~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~ 189 (443)
T 2y4o_A 111 GYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKIIL 189 (443)
T ss_dssp EECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEEE
T ss_pred ecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEEE
Confidence 489999998888888888888999999999988853 4445567888999999888765 4788999999999999999
Q ss_pred EeccchhhHHHHH
Q 045072 117 VDYQSRNLVVEAI 129 (556)
Q Consensus 117 ~~~~~~~~~~~~~ 129 (556)
..+.....+.+..
T Consensus 190 ~~Ps~~~~l~~~~ 202 (443)
T 2y4o_A 190 VTPSYMLNLIDEM 202 (443)
T ss_dssp ECHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHH
Confidence 9888776665543
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=81.45 E-value=18 Score=36.55 Aligned_cols=99 Identities=6% Similarity=-0.033 Sum_probs=72.6
Q ss_pred cCCCCEEEEC--C-------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH--HH-HHHHhhhccceEecc
Q 045072 27 YGDCPSIIYN--N-------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM--YE-AHFAIPFTGAILNNI 94 (556)
Q Consensus 27 ~p~~~a~~~~--~-------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~--~~-~~lA~~~~G~~~v~l 94 (556)
.|+.+|++.. | -.+|.+.+...+..... ..++.++|++...+|-+..+ .. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 3566666652 1 45899888777655543 34788999999888865443 32 478889999998876
Q ss_pred CCCCCHHHHHHHHhccCCeEEEEeccchhhHHHHH
Q 045072 95 NTRLDARTISVLLQHSESKLVLVDYQSRNLVVEAI 129 (556)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 129 (556)
+ ..+.+.+...+++.++++++..+.....+....
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 290 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAA 290 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCc
Confidence 4 567899999999999999999887776665543
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=76.46 E-value=4.7 Score=38.44 Aligned_cols=85 Identities=8% Similarity=-0.075 Sum_probs=62.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCh--HHHHHHHHHhhhccceEeccCCCCCHH--------------
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNI--PAMYEAHFAIPFTGAILNNINTRLDAR-------------- 101 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~v~l~~~~~~~-------------- 101 (556)
..+|.+.+...+..++..+...|+.++|++..++|-+ .--+...++++..|+.+++. ..++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 3489999888888777777788999999999998862 22344445558899855554 33444
Q ss_pred ---------HHHHHHhccCCeEEEEeccchhh
Q 045072 102 ---------TISVLLQHSESKLVLVDYQSRNL 124 (556)
Q Consensus 102 ---------~l~~~l~~~~~~~vi~~~~~~~~ 124 (556)
.+...+++.++.+++........
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~ 218 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRE 218 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHH
Confidence 66779999999999987765544
No 47
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=75.68 E-value=16 Score=36.48 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=72.3
Q ss_pred cCCCCEEEECC---------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH-HHHHHHhhhccceEeccCC
Q 045072 27 YGDCPSIIYNN---------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM-YEAHFAIPFTGAILNNINT 96 (556)
Q Consensus 27 ~p~~~a~~~~~---------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~ 96 (556)
.++.+|++... -.+|.+.+...+..+.. ..++.++|++...+|-.... +..+++++..|+..+..+
T Consensus 161 ~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~- 236 (501)
T 3ipl_A 161 NLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD- 236 (501)
T ss_dssp CTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS-
T ss_pred CCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC-
Confidence 35667766531 35899888877665543 35889999999888765433 344678888999988775
Q ss_pred CCCHHHHHHHHhccCCeEEEEeccchhhHHH
Q 045072 97 RLDARTISVLLQHSESKLVLVDYQSRNLVVE 127 (556)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (556)
..+.+.+...+++.++++++........+..
T Consensus 237 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 267 (501)
T 3ipl_A 237 KFNAEQILTMIKNERITHISLVPQTLNWLMQ 267 (501)
T ss_dssp SCCHHHHHHHHHHSCCCEEEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEchHHHHHHHHh
Confidence 5788999999999999999998877666554
No 48
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=75.58 E-value=13 Score=37.73 Aligned_cols=97 Identities=8% Similarity=0.034 Sum_probs=71.5
Q ss_pred CCCCEEEEC--C-------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHH---HHHHhhhccceEeccC
Q 045072 28 GDCPSIIYN--N-------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYE---AHFAIPFTGAILNNIN 95 (556)
Q Consensus 28 p~~~a~~~~--~-------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~---~~lA~~~~G~~~v~l~ 95 (556)
++.+|++.. | -.+|.+.+...+...+.. .++.++|++...+|....+-. .+++++..|+..+..+
T Consensus 190 ~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 190 ADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp TTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred ccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 456666652 1 458999888777665543 588999999998876544432 4788888999888764
Q ss_pred CCCCHHHHHHHHhccCCeEEEEeccchhhHHHH
Q 045072 96 TRLDARTISVLLQHSESKLVLVDYQSRNLVVEA 128 (556)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 128 (556)
..+...+...+++.+++++...+.....+...
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 298 (544)
T 3o83_A 267 -NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEK 298 (544)
T ss_dssp -SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHCCCEEEechHHHHHHHhc
Confidence 56788889999999999999988766655443
No 49
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=73.76 E-value=16 Score=36.61 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=64.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHH--HHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEE
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYE--AHFAIPFTGAILNNINTRLDARTISVLLQHSESKLV 115 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~--~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (556)
-.+|.+.+...+..++.. .++.++|++...+|-....-. .+++++ .|+..+.. +..+.+.+...+++.+++++
T Consensus 188 V~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~-~~~~~~~~~~~i~~~~~t~~ 262 (517)
T 3r44_A 188 VVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM-PQFDATKVWSLIVEERVCIG 262 (517)
T ss_dssp EEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-SSCCHHHHHHHHHHTTCCEE
T ss_pred eeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-CCCCHHHHHHHHHHhCCeEE
Confidence 458999887776665544 488999999998887654432 345555 88888876 56789999999999999999
Q ss_pred EEeccchhhHHH
Q 045072 116 LVDYQSRNLVVE 127 (556)
Q Consensus 116 i~~~~~~~~~~~ 127 (556)
...+.....+..
T Consensus 263 ~~~P~~~~~l~~ 274 (517)
T 3r44_A 263 GAVPAILNFMRQ 274 (517)
T ss_dssp EECHHHHHHHHH
T ss_pred EeHHHHHHHHHh
Confidence 998877665544
No 50
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=72.43 E-value=12 Score=37.97 Aligned_cols=97 Identities=14% Similarity=0.138 Sum_probs=70.6
Q ss_pred CCCEEEECC---------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH--HHHHHHhhhccceEeccCCC
Q 045072 29 DCPSIIYNN---------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM--YEAHFAIPFTGAILNNINTR 97 (556)
Q Consensus 29 ~~~a~~~~~---------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~ 97 (556)
+.+|++... -.+|.+.+...+......+...++.++|++...+|-...+ ...+++.+ .|+..+.++ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 667776531 4589998877766555443335788999998888765443 33456777 999888775 5
Q ss_pred CCHHHHHHHHhccCCeEEEEeccchhhHHH
Q 045072 98 LDARTISVLLQHSESKLVLVDYQSRNLVVE 127 (556)
Q Consensus 98 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (556)
.+.+.+...+++.++++++..+.....+..
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 299 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILNK 299 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHHh
Confidence 788999999999999999988876665543
No 51
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=70.21 E-value=15 Score=37.23 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=66.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH-HHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEE
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM-YEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVL 116 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (556)
-.+|.+.+...+......+...++.++|++...+|-...+ +...++++..|+..+.+ +..+.+.+...+++.++++++
T Consensus 208 V~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~~~~~~~~~~~i~~~~~t~~~ 286 (550)
T 3rix_A 208 VALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-YRFEEELFLRSLQDYKIQSAL 286 (550)
T ss_dssp EEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-SSCCHHHHHHHHHHTTCSEEE
T ss_pred hhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEe-CCCCHHHHHHHHHHcCCeEEE
Confidence 4588888876655544444335788999998888766433 44567788899988877 457889999999999999999
Q ss_pred EeccchhhHHH
Q 045072 117 VDYQSRNLVVE 127 (556)
Q Consensus 117 ~~~~~~~~~~~ 127 (556)
..+.....+..
T Consensus 287 ~~P~~~~~l~~ 297 (550)
T 3rix_A 287 LVPTLFSFFAK 297 (550)
T ss_dssp ECHHHHHHHHH
T ss_pred eCcHHHHHHHh
Confidence 88876665543
No 52
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=69.81 E-value=55 Score=33.57 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=71.5
Q ss_pred CCCCEEEEC--C-------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHH--HHH-HHHHhhhccceEeccC
Q 045072 28 GDCPSIIYN--N-------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPA--MYE-AHFAIPFTGAILNNIN 95 (556)
Q Consensus 28 p~~~a~~~~--~-------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~--~~~-~~lA~~~~G~~~v~l~ 95 (556)
++.+|++.. | -.+|.+.+...+...... .++.++|++...+|-... +.. .+++++..|+..+..+
T Consensus 183 ~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~ 259 (617)
T 3rg2_A 183 ADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAA 259 (617)
T ss_dssp TTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECS
T ss_pred CCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeC
Confidence 456666542 1 458998887776655443 478999999999885443 332 4788888998888765
Q ss_pred CCCCHHHHHHHHhccCCeEEEEeccchhhHHHHH
Q 045072 96 TRLDARTISVLLQHSESKLVLVDYQSRNLVVEAI 129 (556)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 129 (556)
..+...+...+++.+++++.........+....
T Consensus 260 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 292 (617)
T 3rg2_A 260 -DPSATLCFPLIEKHQVNVTALVPPAVSLWLQAL 292 (617)
T ss_dssp -SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhh
Confidence 457888889999999999999888776665543
No 53
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=65.75 E-value=15 Score=36.86 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=63.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH-HHHHHHhhhccceEeccCCC--CCHHHHHHHHhccCCeE
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM-YEAHFAIPFTGAILNNINTR--LDARTISVLLQHSESKL 114 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (556)
-.+|.+.+...+..... ..++.++|++...+|-+... +..+++++..|+..+.+++. .+.+.+...+++.++++
T Consensus 162 v~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 238 (512)
T 3fce_A 162 VQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQV 238 (512)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCE
T ss_pred EEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcE
Confidence 45899888776655443 35889999999988865433 45578889999998887653 46788899999999999
Q ss_pred EEEeccchhh
Q 045072 115 VLVDYQSRNL 124 (556)
Q Consensus 115 vi~~~~~~~~ 124 (556)
++..+.....
T Consensus 239 ~~~~P~~~~~ 248 (512)
T 3fce_A 239 WTSTPSFAEM 248 (512)
T ss_dssp EEECHHHHHH
T ss_pred EEecHHHHHH
Confidence 9988765544
No 54
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=65.19 E-value=31 Score=32.26 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=47.8
Q ss_pred HHHcC-CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 56 LSSIG-ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 56 L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
+.+.| +++|+.|.+....+-.-..+.++|..+|..++.+-|...+..-...++..++.+++++..
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34455 488888655556677778888888888988776656555555567889999999999764
No 55
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=64.82 E-value=13 Score=35.15 Aligned_cols=94 Identities=10% Similarity=-0.035 Sum_probs=64.6
Q ss_pred hcCCCCEEEEC--C-------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH-HHHHHHhhhccceEeccC
Q 045072 26 VYGDCPSIIYN--N-------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM-YEAHFAIPFTGAILNNIN 95 (556)
Q Consensus 26 ~~p~~~a~~~~--~-------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~ 95 (556)
-+.|.+|++.. | -.+|.+.+...+..++. ..++.++|++...+|-+..+ +..++..+..|+..+..+
T Consensus 34 w~~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 34 WLGGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HHHTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred cCCCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 34577887753 1 45999988877665544 35889999999888765432 444566677888877776
Q ss_pred CCCCHHHHHHHHhccCCeEEEEeccchhhH
Q 045072 96 TRLDARTISVLLQHSESKLVLVDYQSRNLV 125 (556)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 125 (556)
+... ....+++.+++++...+.....+
T Consensus 111 ~~~~---~~~~i~~~~~t~~~~~P~~l~~l 137 (358)
T 4gs5_A 111 PTAN---PLAGLDHADFDFVAMVPMQLQSI 137 (358)
T ss_dssp CCSC---TTTTCSSCCCSEEEECHHHHHHH
T ss_pred cccc---HHHHHHHhCCeEEEcChHHHHHh
Confidence 5433 24567889999988877655444
No 56
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=63.46 E-value=44 Score=33.64 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=68.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH-HHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEE
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM-YEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVL 116 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (556)
-.+|.+.+...+..++.. .++.++|++...+|-.... +..++.++..|+..+.++ ..+.+.+...+++.++++++
T Consensus 198 V~~sh~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~ 273 (549)
T 3g7s_A 198 VMLTHFNLAANALQLAVA---TGLSHMDTIVGCMPMFHSAEFGLVNLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSW 273 (549)
T ss_dssp EEEEHHHHHHHHHHHHHH---HCCCTTCEEECCSCTTSHHHHHHHTTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEE
T ss_pred EEEcHHHHHHHHHHHHHH---cCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEE
Confidence 458999988877766554 4789999998888765443 333677788898888774 67889999999999999999
Q ss_pred EeccchhhHHHHHh
Q 045072 117 VDYQSRNLVVEAIS 130 (556)
Q Consensus 117 ~~~~~~~~~~~~~~ 130 (556)
........+.....
T Consensus 274 ~~P~~~~~l~~~~~ 287 (549)
T 3g7s_A 274 AVPPALNVLVNTLE 287 (549)
T ss_dssp ECHHHHHHHHHHHH
T ss_pred eCCHHHHHHHhhhh
Confidence 98887776665543
No 57
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=59.38 E-value=47 Score=33.73 Aligned_cols=98 Identities=5% Similarity=-0.020 Sum_probs=70.5
Q ss_pred cCCCCEEEECC---------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHH--HHHHHhhhccceEeccC
Q 045072 27 YGDCPSIIYNN---------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMY--EAHFAIPFTGAILNNIN 95 (556)
Q Consensus 27 ~p~~~a~~~~~---------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~--~~~lA~~~~G~~~v~l~ 95 (556)
.++.+|++... -.+|.+.+...+...+. ..++.++|++...+|-...+- ..+++.+..|+..+..+
T Consensus 165 ~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~~ 241 (590)
T 3kxw_A 165 KSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMS 241 (590)
T ss_dssp CTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEECC
T ss_pred CCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEeC
Confidence 35666766531 45899988877766544 458899999999988775543 33788889999888876
Q ss_pred CCC---CHHHHHHHHhccCCeEEEEeccchhhHHH
Q 045072 96 TRL---DARTISVLLQHSESKLVLVDYQSRNLVVE 127 (556)
Q Consensus 96 ~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (556)
+.. ++..+...+++.+++++.........+..
T Consensus 242 ~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~ 276 (590)
T 3kxw_A 242 PFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVK 276 (590)
T ss_dssp HHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHH
Confidence 532 56778889999999988876655554443
No 58
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=58.87 E-value=35 Score=34.38 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=64.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH-HHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEE
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM-YEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVL 116 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (556)
-.+|.+.+...+.... .....++.++|++...+|-.... +...++++..|+..+..++..+++.+...+++.++++++
T Consensus 194 V~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~ 272 (541)
T 1v25_A 194 VVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTA 272 (541)
T ss_dssp EEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEE
T ss_pred eeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEe
Confidence 3488888764433211 11235788999999888765433 234577888999988877667899999999999999999
Q ss_pred EeccchhhHHHH
Q 045072 117 VDYQSRNLVVEA 128 (556)
Q Consensus 117 ~~~~~~~~~~~~ 128 (556)
..+.....+...
T Consensus 273 ~~P~~~~~l~~~ 284 (541)
T 1v25_A 273 GVPTVWLALADY 284 (541)
T ss_dssp ECHHHHHHHHHH
T ss_pred cchHHHHHHHhh
Confidence 988776665544
No 59
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=58.32 E-value=24 Score=35.25 Aligned_cols=86 Identities=8% Similarity=0.041 Sum_probs=64.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH-HHHHHHhhhccceEeccCCC--CCHHHHHHHHhccCCeE
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM-YEAHFAIPFTGAILNNINTR--LDARTISVLLQHSESKL 114 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (556)
-.+|.+.+...+..++. ..++.++|++...+|-+... +..+++++..|+..+.++.. .+...+...+++.++++
T Consensus 161 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 237 (511)
T 3e7w_A 161 VQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNV 237 (511)
T ss_dssp EEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSE
T ss_pred EEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcE
Confidence 34898888776655443 35788999999988866443 44578889999998877543 46788889999999999
Q ss_pred EEEeccchhhHH
Q 045072 115 VLVDYQSRNLVV 126 (556)
Q Consensus 115 vi~~~~~~~~~~ 126 (556)
++..+.....+.
T Consensus 238 ~~~~P~~~~~l~ 249 (511)
T 3e7w_A 238 WTSTPSFVQMCL 249 (511)
T ss_dssp EEECHHHHHHHH
T ss_pred EEecHHHHHHHH
Confidence 998877655443
No 60
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=55.87 E-value=46 Score=33.40 Aligned_cols=96 Identities=13% Similarity=0.026 Sum_probs=67.9
Q ss_pred CCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhh---hhhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecC
Q 045072 186 NEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRK 262 (556)
Q Consensus 186 ~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~ 262 (556)
.++.++++.... | -.+|.+.+...+... ....+++++|++...++-... .....++++..|+..+.+.+
T Consensus 35 ~p~~~a~~~~~~---~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLINGAN---G----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPE-FVLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEETTT---C----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEECCC---C----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCEEeccCC
Confidence 355666654222 2 357888886544443 334688999999988887533 34556788888998888874
Q ss_pred -CCHHHHHHHHHHhCCcEEechhHHHHH
Q 045072 263 -FDAAVIYKMIRQHGVTHMCGAPVVLNM 289 (556)
Q Consensus 263 -~~~~~~~~~i~~~~~t~~~~~p~~~~~ 289 (556)
..++++...++..++..+++.+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 678999999999999999987755433
No 61
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=54.31 E-value=62 Score=32.09 Aligned_cols=85 Identities=8% Similarity=-0.041 Sum_probs=60.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH--HHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEE
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM--YEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLV 115 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (556)
-.+|.+.+...+..... ..++.++|++...+|-...+ ...+.+++..|...++. ..+.+.+...+++.+++++
T Consensus 178 V~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~~--~~~~~~~~~~i~~~~~t~~ 252 (509)
T 3ivr_A 178 ALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIAA--KFDPAQAARDIEAHKVTVM 252 (509)
T ss_dssp EEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS--SCCHHHHHHHHHHHTCCEE
T ss_pred EEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEec--ccCHHHHHHHHHHHCCcEE
Confidence 45899888777665544 35889999999988865443 22333344445544443 6788999999999999999
Q ss_pred EEeccchhhHHH
Q 045072 116 LVDYQSRNLVVE 127 (556)
Q Consensus 116 i~~~~~~~~~~~ 127 (556)
+........+..
T Consensus 253 ~~~p~~~~~l~~ 264 (509)
T 3ivr_A 253 AEFAPMLGNILD 264 (509)
T ss_dssp EEETTHHHHHHH
T ss_pred EecHHHHHHHHh
Confidence 988877665544
No 62
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=51.60 E-value=1e+02 Score=30.46 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=61.2
Q ss_pred EEEchHHHHHHHhhh---hhhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecC-CCHHHHHHHHHHhCCcEEe
Q 045072 206 VVHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRK-FDAAVIYKMIRQHGVTHMC 281 (556)
Q Consensus 206 v~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~ 281 (556)
..+|++.+...+... ....+++++|++...++-... .....++++..|+..+.+++ ..++++...+++.+++.++
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 106 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD-VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV 106 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEE
T ss_pred ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEE
Confidence 568998886544433 334588999999988887543 24556788888999888875 6789999999999999998
Q ss_pred c--hhHHHHHH
Q 045072 282 G--APVVLNMI 290 (556)
Q Consensus 282 ~--~p~~~~~l 290 (556)
. .+.....+
T Consensus 107 ~~~~~~~~~~~ 117 (504)
T 1t5h_X 107 IAVGRQVADAI 117 (504)
T ss_dssp ECC--CHHHHH
T ss_pred Eecchhhhhhh
Confidence 8 65554444
No 63
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=51.52 E-value=51 Score=30.87 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 52 LASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 52 la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
+.....+.-+++|.+..+....+-.-+...++|.++|..+..+=|...+......++..++.+++++..
T Consensus 74 i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 74 ITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 333333434678876667777788888888999999988887777666667778899999999998654
No 64
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=50.99 E-value=89 Score=32.34 Aligned_cols=96 Identities=9% Similarity=0.079 Sum_probs=67.8
Q ss_pred CCCCcEEEEeccCCCCCCceEEEchHHHHHHHh---hhhh-hcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEec
Q 045072 186 NEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTV---DSLI-DWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLR 261 (556)
Q Consensus 186 ~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~---~~~~-~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~ 261 (556)
.++.+|++... ..+| ....+|.+.+..... .... ..+++++|++...+|.... .....++++..|+..+.+.
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e-~v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE-AIITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHH-HHHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCCEEEeeC
Confidence 34567766442 2122 235688888855443 3344 5688999999999987544 3455678888898888776
Q ss_pred -CCCHHHHHHHHHHhCCcEEechhH
Q 045072 262 -KFDAAVIYKMIRQHGVTHMCGAPV 285 (556)
Q Consensus 262 -~~~~~~~~~~i~~~~~t~~~~~p~ 285 (556)
.+.++++...+++.++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 478999999999999999988654
No 65
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=49.67 E-value=96 Score=31.27 Aligned_cols=84 Identities=11% Similarity=0.045 Sum_probs=62.8
Q ss_pred EEEchHHHHHHHhhh---hhhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecC-CCHHHHHHHHHHhCCcEEe
Q 045072 206 VVHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRK-FDAAVIYKMIRQHGVTHMC 281 (556)
Q Consensus 206 v~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~ 281 (556)
-.+|.+.+...+... ....+++++|++...++-... .....++++..|+..+.+.+ ...+++...+++.++..++
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSID-LFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 368888886544433 334588999999988887543 24456788888988888874 6789999999999999999
Q ss_pred chhHHHHHH
Q 045072 282 GAPVVLNMI 290 (556)
Q Consensus 282 ~~p~~~~~l 290 (556)
..+.....+
T Consensus 142 ~~~~~~~~~ 150 (563)
T 1amu_A 142 TQKHLVHLI 150 (563)
T ss_dssp ECGGGHHHH
T ss_pred EcCchhhhh
Confidence 888665544
No 66
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=49.37 E-value=85 Score=31.81 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=67.8
Q ss_pred CCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhh---hhhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecC
Q 045072 186 NEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRK 262 (556)
Q Consensus 186 ~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~ 262 (556)
.++.+|++.... .| ....+|.+.+...+... ....+++++|++...++-... .+...++++..|+..+.+.+
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e-~~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD-FWYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH-HHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH-HHHHHHHHHhCCEEEEeCCc
Confidence 456777765432 12 24678888886544443 344689999999998887543 24556788888988888764
Q ss_pred -CCHHHHHHHHHHhCCcEEechh
Q 045072 263 -FDAAVIYKMIRQHGVTHMCGAP 284 (556)
Q Consensus 263 -~~~~~~~~~i~~~~~t~~~~~p 284 (556)
..+.++...+++.++..+++.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 7889999999999999988754
No 67
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=48.41 E-value=59 Score=32.31 Aligned_cols=96 Identities=10% Similarity=0.060 Sum_probs=68.5
Q ss_pred cCCCCEEEEC--C-------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHH--HHHHHHHhhhccceEeccC
Q 045072 27 YGDCPSIIYN--N-------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPA--MYEAHFAIPFTGAILNNIN 95 (556)
Q Consensus 27 ~p~~~a~~~~--~-------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l~ 95 (556)
.++.+|++.. | -.+|.+.+...+..++..+ ++.++|++...+|.... ++..+++.+..|+..+..
T Consensus 153 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~- 228 (505)
T 3nyq_A 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL- 228 (505)
T ss_dssp CTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC-
T ss_pred CCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC-
Confidence 3556666542 2 4589999888877666544 78899998887775433 344578889999998876
Q ss_pred CCCCHHHHHHHHhccCCeEEEEeccchhhHHH
Q 045072 96 TRLDARTISVLLQHSESKLVLVDYQSRNLVVE 127 (556)
Q Consensus 96 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (556)
+..+.+.+...+ +.++..++..+.....+..
T Consensus 229 ~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 229 GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 456777777777 6789999888776655544
No 68
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=47.85 E-value=82 Score=31.18 Aligned_cols=79 Identities=8% Similarity=-0.030 Sum_probs=60.0
Q ss_pred EEchHHHHHHHhhh---hhhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecC-CCHHHHHHHHHHhCCcEEec
Q 045072 207 VHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRK-FDAAVIYKMIRQHGVTHMCG 282 (556)
Q Consensus 207 ~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~ 282 (556)
.+|.+.+...+... ....+++++|++...++-... .....++++..|+..+.+.+ ...+++...+++.++..+++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVE-ALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 58888886554443 334588999999988887533 34556788888998888874 67899999999999999988
Q ss_pred hhHH
Q 045072 283 APVV 286 (556)
Q Consensus 283 ~p~~ 286 (556)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7643
No 69
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=47.49 E-value=1.5e+02 Score=28.77 Aligned_cols=106 Identities=8% Similarity=-0.022 Sum_probs=72.0
Q ss_pred CCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhhh---hcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecC
Q 045072 186 NEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSLI---DWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRK 262 (556)
Q Consensus 186 ~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~~---~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~ 262 (556)
.++.+|++.........-....+|.+.+...+..... ..+. ++|++...++-... .....++++..|+..+.+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e-~~~~~lA~~~~G~v~vpl~~ 114 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLE-YVVAFLGALQAGRIAVPLSV 114 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHH-HHHHHHHHHHhCcEEEeeCC
Confidence 3557776654422111123467899988665544433 3454 88999888776543 24456788888988888864
Q ss_pred ----CCHHHHHHHHHHhCCcEEechhHHHHHHHcC
Q 045072 263 ----FDAAVIYKMIRQHGVTHMCGAPVVLNMISNL 293 (556)
Q Consensus 263 ----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 293 (556)
...+++...+++.++..++..+.....+...
T Consensus 115 ~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 115 PQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 3567899999999999999998877776554
No 70
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=46.18 E-value=1e+02 Score=26.50 Aligned_cols=90 Identities=13% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCCCEEEEecCh-hhhhhchhhhHhHhcCcEeEEec--CCCHHHHHHHHHHhCCcEEec------------hhHHHHHHH
Q 045072 227 PKQPVYLWTLPM-FHANGWSYPWGMAAVGGTNVCLR--KFDAAVIYKMIRQHGVTHMCG------------APVVLNMIS 291 (556)
Q Consensus 227 ~~~~~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~~~~------------~p~~~~~l~ 291 (556)
....+++.+.+- .|..|....-..+...|.-++.- ...++++.+.+++++++++.. .+.+++.+.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~ 170 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLN 170 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHH
Q ss_pred cCCCCCCCCCCeEEEEeCCCCcHHHHHHh
Q 045072 292 NLPRSEPLRNPVHILTAGAPPPAAVLFRT 320 (556)
Q Consensus 292 ~~~~~~~l~~l~~v~~~g~~~~~~~~~~~ 320 (556)
...+..--.+++||.+++++..+.+
T Consensus 171 ----~~~~~~~v~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 171 ----EEKLRDSVKCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp ----HTTCGGGSEEEEESSSCCHHHHHHH
T ss_pred ----HcCCCCCCEEEEECCCCCHHHHHHh
No 71
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=45.55 E-value=57 Score=35.75 Aligned_cols=101 Identities=10% Similarity=0.045 Sum_probs=71.9
Q ss_pred cCCCCEEEECC---------ccccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCChHH--HHHHHHHhhhccceEecc
Q 045072 27 YGDCPSIIYNN---------LIYTWSQTHRRCLQLASSLS-SIGITRGHVVSVVAPNIPA--MYEAHFAIPFTGAILNNI 94 (556)
Q Consensus 27 ~p~~~a~~~~~---------~~~Ty~~l~~~~~~la~~L~-~~g~~~gd~V~i~~~~~~~--~~~~~lA~~~~G~~~v~l 94 (556)
.|+.+|++... -.+|.+.+...+........ ..++.++|++...+|-... +...+++.+..|+..+..
T Consensus 223 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~ 302 (979)
T 3tsy_A 223 SPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIM 302 (979)
T ss_dssp CTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEEC
T ss_pred CccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEe
Confidence 46777776531 45899888776554433222 2478899999888876533 334567888899988876
Q ss_pred CCCCCHHHHHHHHhccCCeEEEEeccchhhHHHH
Q 045072 95 NTRLDARTISVLLQHSESKLVLVDYQSRNLVVEA 128 (556)
Q Consensus 95 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 128 (556)
+....+.+...+++.+++++...+.....+...
T Consensus 303 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 335 (979)
T 3tsy_A 303 -PKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335 (979)
T ss_dssp -SSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC
T ss_pred -CCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC
Confidence 456788999999999999999887766555443
No 72
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=45.47 E-value=71 Score=31.84 Aligned_cols=82 Identities=10% Similarity=-0.071 Sum_probs=61.1
Q ss_pred EEchHHHHHHHhhh---hhhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecC-CCHHHHHHHHHHhCCcEEec
Q 045072 207 VHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRK-FDAAVIYKMIRQHGVTHMCG 282 (556)
Q Consensus 207 ~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~ 282 (556)
.+|.+.+...+... ....+++++|++...++-... .....++++..|+..+.+.+ ..+.++...+++.++..++.
T Consensus 48 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 126 (529)
T 2v7b_A 48 STTYGELEERARRFASALRTLGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIA 126 (529)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEE
T ss_pred CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEe
Confidence 57888886544443 334588999999988887543 24456788888988888764 67899999999999999988
Q ss_pred hhHHHHH
Q 045072 283 APVVLNM 289 (556)
Q Consensus 283 ~p~~~~~ 289 (556)
.+.....
T Consensus 127 ~~~~~~~ 133 (529)
T 2v7b_A 127 SGALVQN 133 (529)
T ss_dssp EGGGHHH
T ss_pred chhhhhH
Confidence 7765433
No 73
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=45.17 E-value=1.2e+02 Score=31.15 Aligned_cols=94 Identities=17% Similarity=0.089 Sum_probs=66.7
Q ss_pred CCCcEEEEeccCCCCCCceEEEchHHHHHHHhhh---hhhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEec-C
Q 045072 187 EWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLR-K 262 (556)
Q Consensus 187 ~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~-~ 262 (556)
++.+|++... ..+| ..-.+|.+.+...+... ....+++++|++...+|....+ ....++++..|+..+.+. .
T Consensus 90 pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCCC
Confidence 4566666432 2122 24568998886554443 3345899999999998875442 455678888898888876 4
Q ss_pred CCHHHHHHHHHHhCCcEEechh
Q 045072 263 FDAAVIYKMIRQHGVTHMCGAP 284 (556)
Q Consensus 263 ~~~~~~~~~i~~~~~t~~~~~p 284 (556)
+.++++...+++.++.++++..
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCHHHHHHHHHhcCCCEEEEcC
Confidence 7889999999999999988754
No 74
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=44.38 E-value=62 Score=30.15 Aligned_cols=78 Identities=8% Similarity=0.008 Sum_probs=52.0
Q ss_pred cccHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEE
Q 045072 39 IYTWSQTHRRCLQLA---SSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLV 115 (556)
Q Consensus 39 ~~Ty~~l~~~~~~la---~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~v 115 (556)
.+++.+......... ..|...++++|++|+|+...+.-..++++|....|+.++.++.+ .++ ..++++.++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~--~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDIN--QDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESC--HHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECc--HHH-hhhhhhcCCeEE
Confidence 466666543332222 23555689999999999887777777777777777777766543 343 456778888887
Q ss_pred EEec
Q 045072 116 LVDY 119 (556)
Q Consensus 116 i~~~ 119 (556)
+-..
T Consensus 213 i~~~ 216 (348)
T 4eez_A 213 INSG 216 (348)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 7543
No 75
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=43.40 E-value=80 Score=31.94 Aligned_cols=100 Identities=10% Similarity=0.053 Sum_probs=69.7
Q ss_pred CCCCcEEEEeccCCCCCCceEEEchHHHHHHHhhhh---hhc-CCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEec
Q 045072 186 NEWDPMILNYTSGTTSSPKGVVHCHRGIFVMTVDSL---IDW-SIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLR 261 (556)
Q Consensus 186 ~~~~~a~i~~TsGTTG~pK~v~~t~~~~~~~~~~~~---~~~-~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~ 261 (556)
.++.+|++.... .| ....+|.+.+...+.... ... +++++|++...++-... .....++++..|+..+.+.
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e-~~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPE-WWLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHH-HHHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHH-HHHHHHHHHHcCeEEEecC
Confidence 345666665321 11 235688888865444333 334 88999999988887543 2445678888899888876
Q ss_pred C-CCHHHHHHHHHHhCCcEEechhHHHHHH
Q 045072 262 K-FDAAVIYKMIRQHGVTHMCGAPVVLNMI 290 (556)
Q Consensus 262 ~-~~~~~~~~~i~~~~~t~~~~~p~~~~~l 290 (556)
+ ..++++...++..++..+++.+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 4 6789999999999999999877665544
No 76
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=41.11 E-value=1.4e+02 Score=30.05 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=60.0
Q ss_pred EEchHHHHHHHhhh---hhhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecC-CCHHHHHHHHHHhCCcEEec
Q 045072 207 VHCHRGIFVMTVDS---LIDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRK-FDAAVIYKMIRQHGVTHMCG 282 (556)
Q Consensus 207 ~~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~~~~ 282 (556)
.+|.+.+...+... ....+++++|++...++-...+ ....++++..|+..+.+.+ ...+++...+++.++..+++
T Consensus 100 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~ 178 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVT 178 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEe
Confidence 58888886544443 3345889999999888875442 4456788888998888874 67899999999999999988
Q ss_pred hhHH
Q 045072 283 APVV 286 (556)
Q Consensus 283 ~p~~ 286 (556)
....
T Consensus 179 ~~~~ 182 (570)
T 4gr5_A 179 SRPL 182 (570)
T ss_dssp CTTT
T ss_pred cchh
Confidence 7643
No 77
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=39.96 E-value=1e+02 Score=28.44 Aligned_cols=64 Identities=19% Similarity=0.095 Sum_probs=43.9
Q ss_pred HHcC-CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 57 SSIG-ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 57 ~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
.+.| +++|+...+....+-.-..+.++|.+.|..++.+-|......-...++..++.+++++.+
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 3455 466753334455666667777788899988777655544455567888999999998754
No 78
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=39.82 E-value=96 Score=30.04 Aligned_cols=63 Identities=24% Similarity=0.124 Sum_probs=46.3
Q ss_pred HHcC-CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEec
Q 045072 57 SSIG-ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 57 ~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (556)
.+.| +++|....+....+-.-....++|.+.|..++.+-|......-...++..++.+++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 47775555555667777788888999998877665655555666788999999999974
No 79
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=39.79 E-value=1.7e+02 Score=26.47 Aligned_cols=64 Identities=16% Similarity=0.061 Sum_probs=42.8
Q ss_pred HHHcC-CCCCC--EEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 56 LSSIG-ITRGH--VVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 56 L~~~g-~~~gd--~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
+.+.| +++|+ .|.. ...+-.-..+.++|.+.|..++.+-|......-...++..++.+++++.+
T Consensus 51 a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 51 AEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 33445 46666 4433 45555666667778899987776655444455566788899999998765
No 80
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=39.15 E-value=1.2e+02 Score=30.06 Aligned_cols=87 Identities=5% Similarity=-0.039 Sum_probs=61.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH-HHHHHHhhhccceEeccCCC--CCHHHHHHHHhccCCeE
Q 045072 38 LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM-YEAHFAIPFTGAILNNINTR--LDARTISVLLQHSESKL 114 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~~~--~~~~~l~~~l~~~~~~~ 114 (556)
-.+|.+.+...+..+.... ..++.+++++....|-+... +..+++++..|+..+.++.. .+...+...+.+.++.+
T Consensus 163 V~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~ 241 (521)
T 3l8c_A 163 VQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGI 241 (521)
T ss_dssp EEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSE
T ss_pred EEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcE
Confidence 4589988876554333221 24778888888877765443 45567888899888877654 36788899999999999
Q ss_pred EEEeccchhhH
Q 045072 115 VLVDYQSRNLV 125 (556)
Q Consensus 115 vi~~~~~~~~~ 125 (556)
+...+.....+
T Consensus 242 ~~~~P~~~~~l 252 (521)
T 3l8c_A 242 WTSTPSFADMA 252 (521)
T ss_dssp EEECHHHHHHH
T ss_pred EEeCCCHHHHH
Confidence 98877665443
No 81
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=38.99 E-value=57 Score=22.78 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=33.4
Q ss_pred hHHHHHHHhcCCCccccEEEeecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCC
Q 045072 456 SVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLP 514 (556)
Q Consensus 456 ~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~ 514 (556)
..++++.|.+.|.|.+|..+..+.+ ..+.|.. .+.+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~-------~d~~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVET-------DTLKDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEE-------SSHHHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEE-------CCHHHHHHHHHHHhc
Confidence 4789999999999999998866543 4455544 456677777765554
No 82
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=38.97 E-value=1.2e+02 Score=27.73 Aligned_cols=64 Identities=9% Similarity=-0.004 Sum_probs=43.3
Q ss_pred HHHcCC-CCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 56 LSSIGI-TRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 56 L~~~g~-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++.+++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344453 66776655 55556666666777899988777655544444556778999999998763
No 83
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=38.87 E-value=1.3e+02 Score=27.49 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=43.7
Q ss_pred HHHcCC-CCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 56 LSSIGI-TRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 56 L~~~g~-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
+.+.|. ++|+.|.. ...+-.-..+.++|.+.|..++.+-|......-...++..++.+++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334453 66765554 55566666777888889988777655444444556778999999998764
No 84
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=34.15 E-value=1.4e+02 Score=27.72 Aligned_cols=63 Identities=11% Similarity=0.003 Sum_probs=42.4
Q ss_pred HHcC-CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 57 SSIG-ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 57 ~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
.+.| +++|+.|..... +-.-..+.++|...|..++.+-|......-...++..++.+++++..
T Consensus 70 ~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 70 IKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445 467776655543 55555666777789987776655544455566788899999998763
No 85
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=33.32 E-value=78 Score=32.48 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=69.1
Q ss_pred CCCCEEEEC--C-------ccccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHH-HHHHHHhhhccceEeccC-C
Q 045072 28 GDCPSIIYN--N-------LIYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAM-YEAHFAIPFTGAILNNIN-T 96 (556)
Q Consensus 28 p~~~a~~~~--~-------~~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~v~l~-~ 96 (556)
|+.+|++.. | -.+|.+.+...+. .....++.++|++...+|-+.+. +..+++.+..|+..+..+ .
T Consensus 163 ~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~~ 238 (620)
T 4dg8_A 163 ADQIAYINFSSGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDLG 238 (620)
T ss_dssp TTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCSS
T ss_pred CCCeEEEEECCCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCccc
Confidence 566776652 1 3488877754332 22345889999999988866543 445788899999887763 3
Q ss_pred CCCHHHHHHHHhccCCeEEEEeccchhhHHH
Q 045072 97 RLDARTISVLLQHSESKLVLVDYQSRNLVVE 127 (556)
Q Consensus 97 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 127 (556)
..+++.+...+++.+++.+.........+..
T Consensus 239 ~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~ 269 (620)
T 4dg8_A 239 PLDPGVLRQLIGERGADSAWLTASLFNTLVD 269 (620)
T ss_dssp SCCHHHHHHHHHTTCCCEEEEEHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCcEEEccHHHHHHHHh
Confidence 5678999999999999999988877666544
No 86
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=33.08 E-value=70 Score=29.94 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=38.6
Q ss_pred cCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchh
Q 045072 71 APNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRN 123 (556)
Q Consensus 71 ~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (556)
...+-.-..+.++|.+.|..++.+-|...+..-...++..++.+++++....+
T Consensus 82 ~SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~~ 134 (346)
T 3l6b_A 82 HSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDES 134 (346)
T ss_dssp ECSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHHH
T ss_pred eCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 34466666777888899988776656555556677889999999999876433
No 87
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=32.24 E-value=92 Score=29.46 Aligned_cols=61 Identities=11% Similarity=0.126 Sum_probs=34.0
Q ss_pred cCCCCCCEEEEEcCChHH------HHHHHHHhh-hccceEeccCCCC------------CHHHHHHHHhccCCeEEEEec
Q 045072 59 IGITRGHVVSVVAPNIPA------MYEAHFAIP-FTGAILNNINTRL------------DARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 59 ~g~~~gd~V~i~~~~~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 119 (556)
.-+++||+|+|++|.+.- -+-.....+ ..|..++.-+... .+++|...+.+-++++|++..
T Consensus 38 ~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 38 APLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 468999999999998632 222223333 3676665432111 114444555556666666643
No 88
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=32.06 E-value=1.4e+02 Score=27.91 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=43.2
Q ss_pred HHHH--cCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEec
Q 045072 55 SLSS--IGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 55 ~L~~--~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (556)
.|.+ .++++|++|+|+.....-..++.+|-...|+.++.+.. +.+.+ ..+++.++..++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHHhCCCEEEecc
Confidence 4555 68999999999988667777777776543887666543 34443 455678898877543
No 89
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=31.36 E-value=82 Score=29.76 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=36.5
Q ss_pred HHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCC-----CCHHHHHHHHhccC--CeEEEE
Q 045072 55 SLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTR-----LDARTISVLLQHSE--SKLVLV 117 (556)
Q Consensus 55 ~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~--~~~vi~ 117 (556)
.|...++++||.|.+-.+...... -++...|+.++.++.+ .+.+.+...+..-+ .++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 344456788998887776655533 3445678776655432 36677777663333 566654
No 90
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=31.20 E-value=2.1e+02 Score=26.24 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=44.9
Q ss_pred HHHcC-CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 56 LSSIG-ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 56 L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
+.+.| +++|+.|... ..+-.-..+.++|.+.|..++.+-|...+..-...++..++.+++++..
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34445 4677776554 4466667777788888988776656555555567889999999999753
No 91
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=30.96 E-value=2.3e+02 Score=25.79 Aligned_cols=64 Identities=16% Similarity=0.039 Sum_probs=43.0
Q ss_pred HHHcCC-CCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 56 LSSIGI-TRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 56 L~~~g~-~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
+.+.|. ++|+.|.- ...+-.-..+.++|.+.|..++.+-|......-...++..++.+++++..
T Consensus 53 a~~~g~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVD-ATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEE-SCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344454 66665544 44566666677778899987776655444445566788899999998764
No 92
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.85 E-value=1.5e+02 Score=23.94 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhcCCCCCCEEEEecCh-hhhhhchhhhHhHhcCcEeEEec--CCCHHHHHHHHHHhCCcEEechh----
Q 045072 212 GIFVMTVDSLIDWSIPKQPVYLWTLPM-FHANGWSYPWGMAAVGGTNVCLR--KFDAAVIYKMIRQHGVTHMCGAP---- 284 (556)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~g~~~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~~~~~p---- 284 (556)
+.+..+........-....+++.+.+. .|..|...+-..+...|.-+..- ..+++++.+.+++++++++..+-
T Consensus 2 ~~l~~l~~~~~~~~~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~ 81 (161)
T 2yxb_A 2 SSLQSTRERVLGTPRRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGA 81 (161)
T ss_dssp --------------CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred ccHHHHHHHHHhhcCCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechh
Q ss_pred --HHHHHHHcCCCCCCCCCCeEEEEeCCCCcHHHHHHhHhcCC
Q 045072 285 --VVLNMISNLPRSEPLRNPVHILTAGAPPPAAVLFRTESLGF 325 (556)
Q Consensus 285 --~~~~~l~~~~~~~~l~~l~~v~~~g~~~~~~~~~~~~~~~~ 325 (556)
..+..+.+..+...... -.+++|| +........+++.|+
T Consensus 82 ~~~~~~~~i~~L~~~g~~~-i~v~vGG-~~~~~~~~~l~~~G~ 122 (161)
T 2yxb_A 82 HLHLMKRLMAKLRELGADD-IPVVLGG-TIPIPDLEPLRSLGI 122 (161)
T ss_dssp HHHHHHHHHHHHHHTTCTT-SCEEEEE-CCCHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhcCCCC-CEEEEeC-CCchhcHHHHHHCCC
No 93
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=30.31 E-value=1.8e+02 Score=29.16 Aligned_cols=84 Identities=7% Similarity=-0.075 Sum_probs=61.7
Q ss_pred EEEchHHHHHHHhhhh---hhcCCCCCCEEEEecChhhhhhchhhhHhHhcCcEeEEecC-CC-------HHHHHHHHHH
Q 045072 206 VVHCHRGIFVMTVDSL---IDWSIPKQPVYLWTLPMFHANGWSYPWGMAAVGGTNVCLRK-FD-------AAVIYKMIRQ 274 (556)
Q Consensus 206 v~~t~~~~~~~~~~~~---~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~i~~ 274 (556)
-.+|.+.+...+.... ...+++++|++...++-... .....++++..|+..+.+.+ .. ..++...++.
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSE-FVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHH-HHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 5688888865544433 34588999999998887543 34556788888988888864 33 6788999999
Q ss_pred hCCcEEechhHHHHHH
Q 045072 275 HGVTHMCGAPVVLNMI 290 (556)
Q Consensus 275 ~~~t~~~~~p~~~~~l 290 (556)
.++..++........+
T Consensus 127 ~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLV 142 (576)
T ss_dssp HCCSEEEECGGGHHHH
T ss_pred cCCCEEEecHHHHHHH
Confidence 9999999877655443
No 94
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=30.30 E-value=2.1e+02 Score=25.88 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=42.6
Q ss_pred HHcC-CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEec
Q 045072 57 SSIG-ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 57 ~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (556)
.+.| +++|+.|.... .+-.-..+.++|.+.|..++.+-|...+..-...++..++.+++++.
T Consensus 53 ~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 115 (303)
T 2v03_A 53 EKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTK 115 (303)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECC
Confidence 3445 36777666554 45555566677789998877765654445556688899999999976
No 95
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=30.01 E-value=1.3e+02 Score=27.79 Aligned_cols=78 Identities=9% Similarity=0.041 Sum_probs=50.1
Q ss_pred ccccHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeE
Q 045072 38 LIYTWSQTHRRCLQ---LASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKL 114 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~---la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (556)
..+++.+....... .-+.|...++++|++|+|......-..++.+|- ..|+.++.+.. +.+.+ ..+++.++..
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~-~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKL-NLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHH-HHHHHcCCCE
Confidence 34677665422221 123455568999999999987666777777775 46887766644 34444 4567888888
Q ss_pred EEEec
Q 045072 115 VLVDY 119 (556)
Q Consensus 115 vi~~~ 119 (556)
++...
T Consensus 214 ~i~~~ 218 (340)
T 3s2e_A 214 AVNAR 218 (340)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 77543
No 96
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=29.83 E-value=83 Score=21.69 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=32.2
Q ss_pred hHHHHHHHhcCCCccccEEEeecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCC
Q 045072 456 SVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLP 514 (556)
Q Consensus 456 ~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~ 514 (556)
..++.+.|.+.|.|.+|..+..+.+ ..+.+.. .+.+++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~d-----~l~~v~~-------~d~~~l~~~~~~~l~ 61 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVYD-----IVVKVEA-------DSMDKLKDFVTNTIR 61 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSCS-----EEEEEEC-------SSHHHHHHHHHHTGG
T ss_pred HHHHHHHHhCCCCeEEEEEEeccCC-----EEEEEEE-------CCHHHHHHHHHHHhc
Confidence 3788899999999999988765443 4454444 355666666655543
No 97
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=29.66 E-value=1.6e+02 Score=27.34 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=13.7
Q ss_pred CCCCEEEEEcCChHHHHHHHHHhhhccceEecc
Q 045072 62 TRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNI 94 (556)
Q Consensus 62 ~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l 94 (556)
++||.|.+..+..+.+.....++...|+.++.+
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v 119 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYV 119 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEE
Confidence 345555554444433333332333344444433
No 98
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=29.60 E-value=1.7e+02 Score=28.15 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=28.3
Q ss_pred EEEcCChHHHHHH-HHHhhhccceEeccCCCCCH--HHHHHHHhccCCeEEEEeccchhhHH
Q 045072 68 SVVAPNIPAMYEA-HFAIPFTGAILNNINTRLDA--RTISVLLQHSESKLVLVDYQSRNLVV 126 (556)
Q Consensus 68 ~i~~~~~~~~~~~-~lA~~~~G~~~v~l~~~~~~--~~l~~~l~~~~~~~vi~~~~~~~~~~ 126 (556)
+++.+++.+.+.+ +.+++..|-.++.-++.+.. ..+...++..+++++.++....+.+.
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~ 161 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVE 161 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHH
Confidence 4455555555433 33445555444444444432 11222555666776666654333333
No 99
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=29.44 E-value=2.7e+02 Score=25.35 Aligned_cols=72 Identities=7% Similarity=-0.072 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcC-CCCCCEEEEEcCChHHHHHHHHHhhhc----c---ceEeccCCCCC---H---HHHHHHHhccCCe
Q 045072 48 RCLQLASSLSSIG-ITRGHVVSVVAPNIPAMYEAHFAIPFT----G---AILNNINTRLD---A---RTISVLLQHSESK 113 (556)
Q Consensus 48 ~~~~la~~L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~----G---~~~v~l~~~~~---~---~~l~~~l~~~~~~ 113 (556)
...++...+.+.+ +.++++|++.++-+.|+.++...+... | ..++.++.... . +....+.+..+..
T Consensus 7 ~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~ 86 (317)
T 1wy5_A 7 VIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMK 86 (317)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCc
Confidence 3456777777754 588999999999999998888777654 3 45667776653 1 3345566677777
Q ss_pred EEEEec
Q 045072 114 LVLVDY 119 (556)
Q Consensus 114 ~vi~~~ 119 (556)
+.+.+-
T Consensus 87 ~~v~~~ 92 (317)
T 1wy5_A 87 IFVGKE 92 (317)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 766654
No 100
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=29.09 E-value=1.4e+02 Score=27.79 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=33.5
Q ss_pred CCCCCCEEEEEcCChHH------HHHHHHHhh-hccceEeccCCCC-------------CHHHHHHHHhccCCeEEEEec
Q 045072 60 GITRGHVVSVVAPNIPA------MYEAHFAIP-FTGAILNNINTRL-------------DARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 60 g~~~gd~V~i~~~~~~~------~~~~~lA~~-~~G~~~v~l~~~~-------------~~~~l~~~l~~~~~~~vi~~~ 119 (556)
-+++||+|+|++|.+.- -+-.....+ ..|..++.- +.. .+++|...+.+-++++|++..
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~-~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 87 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEG-SLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTI 87 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEEC-TTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEc-ccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 57899999999998732 222223333 357666542 211 114445555566666666643
No 101
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=29.02 E-value=1.7e+02 Score=29.26 Aligned_cols=61 Identities=10% Similarity=-0.004 Sum_probs=44.5
Q ss_pred HcC-CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEec
Q 045072 58 SIG-ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 58 ~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (556)
+.| +++|+.|.- ...+-.-..+.++|...|..++.+-|......-...++..++.++++..
T Consensus 106 ~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 445 577887755 4556666777778888898887665655555666788999999999865
No 102
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=28.68 E-value=2.6e+02 Score=25.25 Aligned_cols=51 Identities=10% Similarity=-0.115 Sum_probs=35.0
Q ss_pred EcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 70 VAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 70 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
....+-.-..+.++|.++|..++.+-|...+..-...++..++.+++++..
T Consensus 70 ~aSsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 70 EPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp EECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred EECchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 344455555666777789987776555444455566788899999998764
No 103
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=28.59 E-value=1e+02 Score=29.01 Aligned_cols=58 Identities=12% Similarity=-0.028 Sum_probs=41.7
Q ss_pred EEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhh
Q 045072 67 VSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNL 124 (556)
Q Consensus 67 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (556)
..+....+-.-..+.++|.+.|..++.+-|..........++..++.+++++....+.
T Consensus 95 ~vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a 152 (364)
T 4h27_A 95 HFVCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDEA 152 (364)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTHH
T ss_pred EEEEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 3344444666677778888999888776666556667788899999999998655443
No 104
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=28.48 E-value=1.2e+02 Score=28.10 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=32.8
Q ss_pred CCCCCCEEEEEcCChHH------HHHHHHHhh-hccceEeccCCCC------------CHHHHHHHHhccCCeEEEEec
Q 045072 60 GITRGHVVSVVAPNIPA------MYEAHFAIP-FTGAILNNINTRL------------DARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 60 g~~~gd~V~i~~~~~~~------~~~~~lA~~-~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 119 (556)
-+++||+|+|++|.+.- -+-...+.+ ..|..++.-+.-. .+++|...+.+-.+++|++..
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~r 86 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTL 86 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 47899999999987642 222223333 3566655332110 114445555556666666643
No 105
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=27.56 E-value=1.7e+02 Score=27.35 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=35.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCC-------CCHHHHHHHHhccCCeEEEEe
Q 045072 61 ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTR-------LDARTISVLLQHSESKLVLVD 118 (556)
Q Consensus 61 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-------~~~~~l~~~l~~~~~~~vi~~ 118 (556)
+++||.|.+..+....+.. ++...|+.++.++.. .+.+.+...+++.++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFYS---VIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHHHH---HHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHHHH---HHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 4678888776666555332 344567766666542 677888888876677776654
No 106
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=27.13 E-value=1.3e+02 Score=27.59 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=49.1
Q ss_pred ccccHHHHHHHHHHH--H-HHHHHcCCCCCCEEEEEc-CChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCe
Q 045072 38 LIYTWSQTHRRCLQL--A-SSLSSIGITRGHVVSVVA-PNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESK 113 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~l--a-~~L~~~g~~~gd~V~i~~-~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~ 113 (556)
..+++.+........ | +.|...++++|++|+|+. ....-..++.+|- ..|+..+.+. +.++ ...+++.++.
T Consensus 124 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 124 EKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 346776654432221 2 334557899999999996 5666666666664 5688766553 3455 5667788888
Q ss_pred EEEEe
Q 045072 114 LVLVD 118 (556)
Q Consensus 114 ~vi~~ 118 (556)
.++..
T Consensus 199 ~~i~~ 203 (321)
T 3tqh_A 199 QCINY 203 (321)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 77643
No 107
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=26.50 E-value=1.7e+02 Score=26.97 Aligned_cols=78 Identities=8% Similarity=-0.037 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHHH---HHHHHHc--CCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeE
Q 045072 40 YTWSQTHRRCLQL---ASSLSSI--GITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKL 114 (556)
Q Consensus 40 ~Ty~~l~~~~~~l---a~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (556)
+++.+........ -+.|.+. ++++|++|+|......-..++.+|-..-|+.++.++. +.++ ..++++.++..
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~-~~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDR-LALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHH-HHHHHHcCCCE
Confidence 6776654332221 2334443 7899999999988667777777776654666666643 3444 44667889988
Q ss_pred EEEecc
Q 045072 115 VLVDYQ 120 (556)
Q Consensus 115 vi~~~~ 120 (556)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876543
No 108
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=26.50 E-value=1.8e+02 Score=27.36 Aligned_cols=59 Identities=14% Similarity=0.192 Sum_probs=35.8
Q ss_pred HcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCC----CCHHHHHHHHhcc--CCeEEEEec
Q 045072 58 SIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTR----LDARTISVLLQHS--ESKLVLVDY 119 (556)
Q Consensus 58 ~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~----~~~~~l~~~l~~~--~~~~vi~~~ 119 (556)
..++++||.|.+..+........ +...|+.++.++.+ .+.+.+...+++. ++++|+...
T Consensus 66 ~l~~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 66 VAGVKQDDIVLASSFTFIASVAP---ICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HTTCCTTCEEEEESSSCGGGTHH---HHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HcCCCCCCEEEECCCccHHHHHH---HHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 33567888888877766655433 23367666655432 3567777777653 456666543
No 109
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=26.14 E-value=1.7e+02 Score=27.03 Aligned_cols=75 Identities=13% Similarity=-0.032 Sum_probs=47.3
Q ss_pred ccccHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeE
Q 045072 38 LIYTWSQTHRRCLQL---ASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKL 114 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~l---a~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (556)
..+++.+........ -..|.+.++++|++|+|+.....-..++.+|- ..|+.++.+..+- +++ ..+++.++..
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~-~~~~~lGa~~ 223 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKK-QDALSMGVKH 223 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTH-HHHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHH-HHHHhcCCCe
Confidence 346666654221111 23455668999999999987666667766765 4688776665442 232 3456788888
Q ss_pred EE
Q 045072 115 VL 116 (556)
Q Consensus 115 vi 116 (556)
++
T Consensus 224 v~ 225 (348)
T 3two_A 224 FY 225 (348)
T ss_dssp EE
T ss_pred ec
Confidence 77
No 110
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=25.63 E-value=1.4e+02 Score=27.51 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEcCChH------HHHHHHHHh-hhccceEeccCCCC------------CHHHHHHHHhccCCeEEEEec
Q 045072 60 GITRGHVVSVVAPNIP------AMYEAHFAI-PFTGAILNNINTRL------------DARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 60 g~~~gd~V~i~~~~~~------~~~~~~lA~-~~~G~~~v~l~~~~------------~~~~l~~~l~~~~~~~vi~~~ 119 (556)
-+++||+|+|++|.+. +-+-..... -..|..++.-+.-. .++++...+.+-.+++|++..
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~r 86 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVI 86 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcC
Confidence 5789999999999752 222222222 23466655332111 114455556666666666643
No 111
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=25.53 E-value=2.3e+02 Score=27.63 Aligned_cols=70 Identities=7% Similarity=0.016 Sum_probs=50.9
Q ss_pred HHHHHHHHcC-CCCCCEEEEEcCChHHHHHHHHHhhh----cc--ceEeccCCCCC-H------HHHHHHHhccCCeEEE
Q 045072 51 QLASSLSSIG-ITRGHVVSVVAPNIPAMYEAHFAIPF----TG--AILNNINTRLD-A------RTISVLLQHSESKLVL 116 (556)
Q Consensus 51 ~la~~L~~~g-~~~gd~V~i~~~~~~~~~~~~lA~~~----~G--~~~v~l~~~~~-~------~~l~~~l~~~~~~~vi 116 (556)
++...+.+.+ +.++++|+|.++-+.|+.+++..+.. .| ..++.++..+. . +....+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 4566777765 58899999999999999888877665 33 56677777775 2 3445667778888777
Q ss_pred Eecc
Q 045072 117 VDYQ 120 (556)
Q Consensus 117 ~~~~ 120 (556)
.+-+
T Consensus 84 ~~~~ 87 (464)
T 3a2k_A 84 AQID 87 (464)
T ss_dssp EECC
T ss_pred EEec
Confidence 6543
No 112
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=25.23 E-value=1.6e+02 Score=27.52 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHcCCC-CCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEec
Q 045072 55 SLSSIGIT-RGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 55 ~L~~~g~~-~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~ 119 (556)
.|.+.+++ +|++|+|+.....-..++.+|-. .|+.++.+..+ .+.+....++.++..++...
T Consensus 171 ~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~~--~~~~~~~~~~lGa~~vi~~~ 233 (357)
T 2cf5_A 171 PLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISSS--NKKREEALQDLGADDYVIGS 233 (357)
T ss_dssp HHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEESS--TTHHHHHHTTSCCSCEEETT
T ss_pred HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC--hHHHHHHHHHcCCceeeccc
Confidence 35556888 99999999876666777777654 68876655543 34444445578888776543
No 113
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=25.13 E-value=51 Score=29.51 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcC
Q 045072 50 LQLASSLSSIGITRGHVVSVVAP 72 (556)
Q Consensus 50 ~~la~~L~~~g~~~gd~V~i~~~ 72 (556)
..+...|++.|+++||.|.|++.
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsS 40 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSS 40 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEec
Confidence 56788899999999999999987
No 114
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=24.93 E-value=1.4e+02 Score=27.73 Aligned_cols=76 Identities=11% Similarity=-0.001 Sum_probs=47.9
Q ss_pred cccHHHHHHHHHHH--H-HHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccc-eEeccCCCCCHHHHHHHHhccCCeE
Q 045072 39 IYTWSQTHRRCLQL--A-SSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGA-ILNNINTRLDARTISVLLQHSESKL 114 (556)
Q Consensus 39 ~~Ty~~l~~~~~~l--a-~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~ 114 (556)
.+++.+.......+ | +.|...++++|++|+|+..-..-..++.+|- ..|+ .++.++.+ .++ ..++++.++..
T Consensus 139 ~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~~--~~~-~~~~~~lGa~~ 214 (352)
T 3fpc_A 139 EIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGSR--KHC-CDIALEYGATD 214 (352)
T ss_dssp TSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECCC--HHH-HHHHHHHTCCE
T ss_pred CCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECCC--HHH-HHHHHHhCCce
Confidence 46666653221111 1 2355678999999999987666666666664 5787 56655433 333 45667788887
Q ss_pred EEEe
Q 045072 115 VLVD 118 (556)
Q Consensus 115 vi~~ 118 (556)
++..
T Consensus 215 vi~~ 218 (352)
T 3fpc_A 215 IINY 218 (352)
T ss_dssp EECG
T ss_pred EEcC
Confidence 7753
No 115
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=24.62 E-value=1.8e+02 Score=27.34 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=40.7
Q ss_pred HHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccc-eEeccCCCCCHHHHHHHHhccCCeEEEE
Q 045072 55 SLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGA-ILNNINTRLDARTISVLLQHSESKLVLV 117 (556)
Q Consensus 55 ~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~~vi~ 117 (556)
.|...++++|++|+|......-.+++.+|- ..|+ .++.++.+ .+. ..++++.++..++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~~--~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTRQ--ATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSC--HHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECCC--HHH-HHHHHHcCCCEEEC
Confidence 355568999999999987556666666665 5788 56655433 343 44667788887764
No 116
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=24.60 E-value=3e+02 Score=23.18 Aligned_cols=83 Identities=4% Similarity=-0.034 Sum_probs=43.2
Q ss_pred ccccHHHHHHHHHHHHHHHHH-------cCCCCCCEEEEEcCCh----HHHHHHHHHhhhccceEeccCCCCCHHHHHHH
Q 045072 38 LIYTWSQTHRRCLQLASSLSS-------IGITRGHVVSVVAPNI----PAMYEAHFAIPFTGAILNNINTRLDARTISVL 106 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la~~L~~-------~g~~~gd~V~i~~~~~----~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~ 106 (556)
..++..|.+..++.+-..+.. ..-..+.+|.+.++.+ .-..+....+-..|..++.+..+.+.+++...
T Consensus 55 g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~ 134 (210)
T 1y80_A 55 NEMFVPEVLMSANAMNAGVEVVKQSQQAFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEA 134 (210)
T ss_dssp ------------------------------CCCCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 446666665554444443332 1112334666665442 33344444555789999999999999999999
Q ss_pred HhccCCeEEEEecc
Q 045072 107 LQHSESKLVLVDYQ 120 (556)
Q Consensus 107 l~~~~~~~vi~~~~ 120 (556)
+++.++++|..+..
T Consensus 135 ~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 135 VKKYQPDIVGMSAL 148 (210)
T ss_dssp HHHHCCSEEEEECC
T ss_pred HHHcCCCEEEEecc
Confidence 99999999988763
No 117
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=24.51 E-value=1.6e+02 Score=27.57 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=27.8
Q ss_pred cCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccC--CC---CCHHHHHHHHhccCCeEEEE
Q 045072 59 IGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNIN--TR---LDARTISVLLQHSESKLVLV 117 (556)
Q Consensus 59 ~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~---~~~~~l~~~l~~~~~~~vi~ 117 (556)
.++++||.|.+..+...... -++...|+.++.++ +. .+.+.+...++. ++++|+.
T Consensus 74 ~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 133 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIP 133 (393)
T ss_dssp TTCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECC
T ss_pred cCCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEE
Confidence 34566777666655554433 22334555444433 21 345666665543 4555554
No 118
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=24.45 E-value=2.3e+02 Score=23.32 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHH---HHHHhccCCeEEEEec
Q 045072 48 RCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTI---SVLLQHSESKLVLVDY 119 (556)
Q Consensus 48 ~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l---~~~l~~~~~~~vi~~~ 119 (556)
+...+...|.+.+ ++..+.|+++.....-...-.+-..|..+..++..++.++- ...++..+..++++++
T Consensus 32 K~~~L~~ll~~~~--~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~ 104 (185)
T 2jgn_A 32 KRSFLLDLLNATG--KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA 104 (185)
T ss_dssp HHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC
T ss_pred HHHHHHHHHHhcC--CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 4455566666643 56778888887766555544555567778888877765433 3344556677777664
No 119
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=24.44 E-value=1.9e+02 Score=26.84 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=49.0
Q ss_pred cccHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEcC-ChHHHHHHHHHhhhccceEe-ccCCCCCHHHHHHHHhccCC
Q 045072 39 IYTWSQTHRRC--LQLA-SSLSS-IGITRGHVVSVVAP-NIPAMYEAHFAIPFTGAILN-NINTRLDARTISVLLQHSES 112 (556)
Q Consensus 39 ~~Ty~~l~~~~--~~la-~~L~~-~g~~~gd~V~i~~~-~~~~~~~~~lA~~~~G~~~v-~l~~~~~~~~l~~~l~~~~~ 112 (556)
.+++.+..... --.| ..|.+ .++++|++|+|+.. ...-.+++.+|- ..|+..+ ..+..-..++....+++.++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 46776643321 1122 23444 48999999999987 566677777765 4687544 44444344445566788899
Q ss_pred eEEEEe
Q 045072 113 KLVLVD 118 (556)
Q Consensus 113 ~~vi~~ 118 (556)
..++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 887753
No 120
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=23.69 E-value=1.4e+02 Score=27.41 Aligned_cols=60 Identities=12% Similarity=-0.029 Sum_probs=40.5
Q ss_pred CCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhh
Q 045072 64 GHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNL 124 (556)
Q Consensus 64 gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (556)
++.|.. ...+-.-..+.++|.+.|..++.+-|..........++..++.+++++....+.
T Consensus 54 ~~~vv~-~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~ 113 (318)
T 2rkb_A 54 CRHLVC-SSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEA 113 (318)
T ss_dssp CCEEEE-CCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHHHH
T ss_pred CCEEEE-ECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHHHH
Confidence 344443 344666666677888999887766555444556678889999999987654433
No 121
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=23.66 E-value=1.6e+02 Score=20.24 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=31.4
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccce
Q 045072 39 IYTWSQTHRRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAI 90 (556)
Q Consensus 39 ~~Ty~~l~~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~ 90 (556)
.+.+.+|.+ .+.+.+..+++.|.++|..+.....+...+...|..
T Consensus 23 ~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 23 NIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp ECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 455666543 344556778888999998888777777777777753
No 122
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=23.52 E-value=85 Score=22.35 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=32.6
Q ss_pred hHHHHHHHhcCCCccccEEEeecCCCCCeeeEEEEEecccccCCCCHHHHHHHHHhcCCC
Q 045072 456 SVEVESVLYTNPAVNEAAVVARPDEFWGETPCAFLSLKAELEKKPTEKEIIEYCRARLPR 515 (556)
Q Consensus 456 ~~~ie~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~i~~~l~~~l~~ 515 (556)
..++.+.+.++|.|.+|..+..+.+ ..+.|... +.+++.+.+.+++..
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~D-----~ll~v~~~-------d~~~l~~~l~~~l~~ 62 (92)
T 2djw_A 15 VQALGEAIAELPQVAEVYSVTGPYD-----LVALVRLK-------DVEELDDVVTQGILS 62 (92)
T ss_dssp HHHHHHHHTTSTTEEEEEEESSSSS-----EEEEEEES-------SGGGHHHHCCCCCTT
T ss_pred HHHHHHHHhcCCCeEEEEEeecCCC-----EEEEEEEC-------CHHHHHHHHHHhccc
Confidence 5788899999999999999866543 45555543 444565666555543
No 123
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=23.41 E-value=57 Score=29.33 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcC
Q 045072 50 LQLASSLSSIGITRGHVVSVVAP 72 (556)
Q Consensus 50 ~~la~~L~~~g~~~gd~V~i~~~ 72 (556)
..+...|++.|+++||.|.|++.
T Consensus 16 ~~L~~~L~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 16 QSITEDLKALGLKKGMTVLVHSS 38 (273)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEec
Confidence 34678899999999999999987
No 124
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=23.18 E-value=4e+02 Score=25.24 Aligned_cols=57 Identities=9% Similarity=-0.049 Sum_probs=41.2
Q ss_pred EcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHH
Q 045072 70 VAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVV 126 (556)
Q Consensus 70 ~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 126 (556)
....+-.-..+.++|.++|..++.+-|......-...++..++.+++++....+...
T Consensus 117 ~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~~ 173 (398)
T 4d9i_A 117 TTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVR 173 (398)
T ss_dssp EECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHHHHH
T ss_pred EECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHHHHH
Confidence 355566667777788888988776666555556677889999999999876544433
No 125
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=23.15 E-value=58 Score=29.38 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcC
Q 045072 50 LQLASSLSSIGITRGHVVSVVAP 72 (556)
Q Consensus 50 ~~la~~L~~~g~~~gd~V~i~~~ 72 (556)
..+...|++.|+++||.|.|++.
T Consensus 25 ~~L~~~L~~LGI~~Gd~llVHsS 47 (286)
T 3sma_A 25 DRLASDLAALGVRPGGVLLVHAS 47 (286)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEec
Confidence 34567788999999999999987
No 126
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=23.00 E-value=3e+02 Score=25.29 Aligned_cols=55 Identities=13% Similarity=0.125 Sum_probs=32.6
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccC--C----CCCHHHHHHHHhc----cCCeEEEEe
Q 045072 61 ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNIN--T----RLDARTISVLLQH----SESKLVLVD 118 (556)
Q Consensus 61 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~----~~~~~~l~~~l~~----~~~~~vi~~ 118 (556)
+++||.|.+..+........ +...|+.++.++ . ..+.+.+...+++ -++++++..
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 154 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALIT 154 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEE
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEE
Confidence 46788887777666555444 455666665554 2 2356777777764 345555554
No 127
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A
Probab=22.97 E-value=2.1e+02 Score=26.61 Aligned_cols=76 Identities=21% Similarity=0.086 Sum_probs=47.3
Q ss_pred ccccHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccc-eEeccCCCCCHHHHHHHHhccCCe
Q 045072 38 LIYTWSQTHRRCLQLA---SSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGA-ILNNINTRLDARTISVLLQHSESK 113 (556)
Q Consensus 38 ~~~Ty~~l~~~~~~la---~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~-~~v~l~~~~~~~~l~~~l~~~~~~ 113 (556)
..+++.+..- ..-++ ..|...++++|++|+|+.....-..++.+|- ..|+ .++.+.. +.+. ..++++.++.
T Consensus 144 ~~l~~~~aa~-~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~ 218 (356)
T 1pl8_A 144 DNVTFEEGAL-IEPLSVGIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAK-AMGAAQVVVTDL--SATR-LSKAKEIGAD 218 (356)
T ss_dssp TTSCHHHHHH-HHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCS
T ss_pred CCCCHHHHHh-hchHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHhCCC
Confidence 3467766432 22222 2344568999999999987666677777765 4687 5555543 3443 3456678888
Q ss_pred EEEEe
Q 045072 114 LVLVD 118 (556)
Q Consensus 114 ~vi~~ 118 (556)
.++..
T Consensus 219 ~vi~~ 223 (356)
T 1pl8_A 219 LVLQI 223 (356)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 77653
No 128
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=22.83 E-value=2.6e+02 Score=26.07 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCC-----CCHHHHHHHHhccCCeEEEEe
Q 045072 60 GITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTR-----LDARTISVLLQHSESKLVLVD 118 (556)
Q Consensus 60 g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~-----~~~~~l~~~l~~~~~~~vi~~ 118 (556)
++++||.|.+..+....... ++...|+.++.++.+ .+.+.+...++. +.++|+..
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 57889988887776655544 344567666554432 356777777754 55666653
No 129
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=22.78 E-value=2.6e+02 Score=26.20 Aligned_cols=14 Identities=0% Similarity=-0.019 Sum_probs=7.6
Q ss_pred ceEEEchHHHHHHH
Q 045072 204 KGVVHCHRGIFVMT 217 (556)
Q Consensus 204 K~v~~t~~~~~~~~ 217 (556)
-|+.+....+...+
T Consensus 206 ~g~~~~~~~~~~~~ 219 (416)
T 3isl_A 206 MAPITYNERVADVI 219 (416)
T ss_dssp EEEEEECHHHHHHH
T ss_pred eEEEEECHHHHHHh
Confidence 35566666655443
No 130
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=22.55 E-value=1.9e+02 Score=26.47 Aligned_cols=86 Identities=6% Similarity=0.031 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCC--CCCHH---HHHHHHhccCCe
Q 045072 41 TWSQTHRRCLQLASSLSSI--GITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINT--RLDAR---TISVLLQHSESK 113 (556)
Q Consensus 41 Ty~~l~~~~~~la~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~--~~~~~---~l~~~l~~~~~~ 113 (556)
.+.++.++.+.+-..+++. .+....+..+...+...++.-.|++-..+.. .+.+ .-++. ++...+++.+++
T Consensus 164 Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~~~~--~i~~~~ePs~~~l~~l~~~ik~~~v~ 241 (307)
T 3ujp_A 164 NAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEIYMW--PINAEQQFTPKQVQTVIEEVKTNNVP 241 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEEEEE--SSCCSSCCCHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEEEee--ccCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 3455555666666666552 4444556777777788888888887765432 3333 23454 555677889999
Q ss_pred EEEEeccchhhHHHH
Q 045072 114 LVLVDYQSRNLVVEA 128 (556)
Q Consensus 114 ~vi~~~~~~~~~~~~ 128 (556)
+||+......+..+.
T Consensus 242 ~If~e~~~~~k~~~~ 256 (307)
T 3ujp_A 242 TIFCESTVSDKGQKQ 256 (307)
T ss_dssp EEEEETTSCSHHHHH
T ss_pred EEEEeCCCChHHHHH
Confidence 999988766654444
No 131
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=22.07 E-value=3.9e+02 Score=24.90 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=34.5
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhcc---CCeEEEEec
Q 045072 61 ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHS---ESKLVLVDY 119 (556)
Q Consensus 61 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~---~~~~vi~~~ 119 (556)
+++||.|.+..|....+.. ++...|+.++.++. .+.+.+...++.. +++++++..
T Consensus 124 ~~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~ 181 (398)
T 3a2b_A 124 MGRNDYILLDERDHASIID---GSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDG 181 (398)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEES
T ss_pred hCCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeC
Confidence 4677877777766554433 34456777776654 4667777777664 566666544
No 132
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=22.02 E-value=1.7e+02 Score=28.45 Aligned_cols=62 Identities=10% Similarity=-0.122 Sum_probs=43.3
Q ss_pred EEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchhhHHHH
Q 045072 67 VSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRNLVVEA 128 (556)
Q Consensus 67 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 128 (556)
..+....+-.-....++|.++|..++.+-|...+..-...++..++.+++++....+....+
T Consensus 162 ~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~~a 223 (442)
T 3ss7_X 162 SIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEG 223 (442)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHH
Confidence 44555556666677777888898777665555555566778999999999987655544443
No 133
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=21.85 E-value=1.7e+02 Score=27.39 Aligned_cols=75 Identities=15% Similarity=-0.012 Sum_probs=45.7
Q ss_pred ccHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEE
Q 045072 40 YTWSQTHRRCLQL---ASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVL 116 (556)
Q Consensus 40 ~Ty~~l~~~~~~l---a~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi 116 (556)
+++.+........ -..|.+.++++|++|+|+.....-..++.+|-. .|+.++.+..+ .+++. .+++.++..++
T Consensus 168 ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~Vi~~~~~--~~~~~-~a~~lGa~~vi 243 (369)
T 1uuf_A 168 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTTS--EAKRE-AAKALGADEVV 243 (369)
T ss_dssp GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESS--GGGHH-HHHHHTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCC--HHHHH-HHHHcCCcEEe
Confidence 7776643221111 234555689999999999876666777777654 58875555433 33333 34567888776
Q ss_pred Ee
Q 045072 117 VD 118 (556)
Q Consensus 117 ~~ 118 (556)
..
T Consensus 244 ~~ 245 (369)
T 1uuf_A 244 NS 245 (369)
T ss_dssp ET
T ss_pred cc
Confidence 43
No 134
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=21.34 E-value=1.6e+02 Score=27.40 Aligned_cols=58 Identities=10% Similarity=-0.109 Sum_probs=38.6
Q ss_pred EEEEcCChHHHHHHHHHhhhccceEeccCCCC-CHHHHHHHHhccCCeEEEEeccchhh
Q 045072 67 VSVVAPNIPAMYEAHFAIPFTGAILNNINTRL-DARTISVLLQHSESKLVLVDYQSRNL 124 (556)
Q Consensus 67 V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~-~~~~l~~~l~~~~~~~vi~~~~~~~~ 124 (556)
..+....+-.-..+.++|.+.|..++.+-|.. ....-...++..++++++++....+.
T Consensus 79 ~vv~~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~~~~~ 137 (351)
T 3aey_A 79 AVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDA 137 (351)
T ss_dssp EEEESCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 33444555555666688889998877665543 33444567888999999998764433
No 135
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=21.20 E-value=2.9e+02 Score=25.70 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCChHHHHHHHHHhhhccceEeccC--CC--CCHHHHHHHHhc-cCCeEEEEe
Q 045072 61 ITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNIN--TR--LDARTISVLLQH-SESKLVLVD 118 (556)
Q Consensus 61 ~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~--~~--~~~~~l~~~l~~-~~~~~vi~~ 118 (556)
+++||.|.+..+..+... ..-.+...|+.++.++ ++ .+.+.+...+++ -++++|+..
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~ 141 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVC 141 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEe
Confidence 467787777766554432 1111233465544443 32 466777777753 356666654
No 136
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=21.18 E-value=1.6e+02 Score=27.81 Aligned_cols=56 Identities=13% Similarity=-0.037 Sum_probs=39.0
Q ss_pred EEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEeccchh
Q 045072 68 SVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVDYQSRN 123 (556)
Q Consensus 68 ~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 123 (556)
.+....+-.-..+.++|.+.|..++.+-|......-...++..++.+++++....+
T Consensus 96 vv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~ 151 (372)
T 1p5j_A 96 FVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDE 151 (372)
T ss_dssp EEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSCHHH
T ss_pred EEEeCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCCHHH
Confidence 33344466666667788899988777656555555667888999999998765433
No 137
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}
Probab=21.01 E-value=2e+02 Score=25.28 Aligned_cols=70 Identities=1% Similarity=-0.118 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhcc----ceEeccCCCCC--HHHHHHHHhccCCeEEEEec
Q 045072 47 RRCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTG----AILNNINTRLD--ARTISVLLQHSESKLVLVDY 119 (556)
Q Consensus 47 ~~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G----~~~v~l~~~~~--~~~l~~~l~~~~~~~vi~~~ 119 (556)
+..+++..+|++. .++.|++.++-+.|+.++..-|.+++ ...+.++...+ .+....+.+..++.+.+.+-
T Consensus 8 ~~~~~l~~~i~~~---~~~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~~~~~~a~~~a~~lgi~~~~i~i 83 (257)
T 2e18_A 8 KVIERILEFIREK---GNNGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVINI 83 (257)
T ss_dssp HHHHHHHHHHHHH---CTTCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCSTHHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHHHHh---CCCcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCchHHHHHHHHHHHhCCCEEEEEC
Confidence 3445667777776 35679999999999877665555553 34555554433 34455666778887776654
No 138
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=20.73 E-value=2.2e+02 Score=26.45 Aligned_cols=10 Identities=20% Similarity=0.139 Sum_probs=5.5
Q ss_pred ceEEEchHHH
Q 045072 204 KGVVHCHRGI 213 (556)
Q Consensus 204 K~v~~t~~~~ 213 (556)
-|+.+....+
T Consensus 228 ~G~~~~~~~~ 237 (390)
T 1elu_A 228 VGGLYIHGDC 237 (390)
T ss_dssp CEEEEECTTT
T ss_pred eEEEEECHHh
Confidence 3666665543
No 139
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=20.72 E-value=1.6e+02 Score=27.31 Aligned_cols=50 Identities=8% Similarity=-0.058 Sum_probs=21.7
Q ss_pred EEcCChHHHHHHHHHhh-----hccceEeccCCCCCH-HHHHHHHhccCCeEEEEe
Q 045072 69 VVAPNIPAMYEAHFAIP-----FTGAILNNINTRLDA-RTISVLLQHSESKLVLVD 118 (556)
Q Consensus 69 i~~~~~~~~~~~~lA~~-----~~G~~~v~l~~~~~~-~~l~~~l~~~~~~~vi~~ 118 (556)
++.+++.+.+.+.+.++ .-|-.++..++.++. ......++..+.+++.+.
T Consensus 64 ~~~~g~t~a~~~~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 119 (382)
T 4eb5_A 64 VFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIP 119 (382)
T ss_dssp EEESSHHHHHHHHHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEEC
T ss_pred EEcCchHHHHHHHHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEec
Confidence 33444555443333332 345444444444432 122233444566666654
No 140
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=20.68 E-value=3.6e+02 Score=25.61 Aligned_cols=14 Identities=14% Similarity=0.079 Sum_probs=8.6
Q ss_pred CCceEEEchHHHHH
Q 045072 202 SPKGVVHCHRGIFV 215 (556)
Q Consensus 202 ~pK~v~~t~~~~~~ 215 (556)
.+-|+.+.....+.
T Consensus 235 ~~~G~vv~~~~~~~ 248 (414)
T 3ndn_A 235 VLGGAILGDREYID 248 (414)
T ss_dssp CCCEEEEECHHHHT
T ss_pred ceEEEEEECHHHHH
Confidence 34577777766543
No 141
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=20.44 E-value=2.6e+02 Score=26.02 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=41.7
Q ss_pred HHHHcCCC-CCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHHhccCCeEEEEe
Q 045072 55 SLSSIGIT-RGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLLQHSESKLVLVD 118 (556)
Q Consensus 55 ~L~~~g~~-~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l~~~~~~~vi~~ 118 (556)
.|.+.+++ +|++|+|+.....-..++.+|- ..|+.++.+.. +.+.+....++.++..++..
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~ 239 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVS 239 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEET
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEec
Confidence 35556888 9999999987666677777665 46886655543 34555555557888877643
No 142
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=20.42 E-value=2.5e+02 Score=25.69 Aligned_cols=89 Identities=10% Similarity=0.160 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHH---HHHHhccCCeEEE
Q 045072 42 WSQTHRRCLQLASSLSSI--GITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTI---SVLLQHSESKLVL 116 (556)
Q Consensus 42 y~~l~~~~~~la~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l---~~~l~~~~~~~vi 116 (556)
+.++.++.+.+-..+++. .++...+..+...+...++.-.|++-..|..-+.=...-++.++ ...+++.++++||
T Consensus 172 ~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If 251 (313)
T 1toa_A 172 YQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIF 251 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 444555555555555542 34444566677777888888888887666432211223355544 5566789999999
Q ss_pred EeccchhhHHHHHh
Q 045072 117 VDYQSRNLVVEAIS 130 (556)
Q Consensus 117 ~~~~~~~~~~~~~~ 130 (556)
++........+.+.
T Consensus 252 ~e~~~~~~~~~~la 265 (313)
T 1toa_A 252 IESSIPHKNVEALR 265 (313)
T ss_dssp EETTSCTHHHHHHH
T ss_pred EeCCCChHHHHHHH
Confidence 98877665554443
No 143
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=20.37 E-value=1.7e+02 Score=26.27 Aligned_cols=86 Identities=8% Similarity=0.069 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCC--CCCHHHH---HHHHhccCCe
Q 045072 41 TWSQTHRRCLQLASSLSSI--GITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINT--RLDARTI---SVLLQHSESK 113 (556)
Q Consensus 41 Ty~~l~~~~~~la~~L~~~--g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~--~~~~~~l---~~~l~~~~~~ 113 (556)
.+.++.++...+-..+++. .+..+.+..+...+...++.-.|++-..|..- +++ .-++.++ ...+++.+++
T Consensus 137 N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~~~~~--~~~~~eps~~~l~~l~~~ik~~~v~ 214 (282)
T 3mfq_A 137 NTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLYAPQG--VSTDSEVANSDMIETVNLIIDHNIK 214 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEECSSC--SSSCSCCCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEecccc--cCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 4455566666666666652 44446677787877888888888877665322 223 2345544 5567788999
Q ss_pred EEEEeccchhhHHHH
Q 045072 114 LVLVDYQSRNLVVEA 128 (556)
Q Consensus 114 ~vi~~~~~~~~~~~~ 128 (556)
+||++........+.
T Consensus 215 ~if~e~~~~~~~~~~ 229 (282)
T 3mfq_A 215 AIFTESTTNPERMKK 229 (282)
T ss_dssp EEECBTTSCTHHHHH
T ss_pred EEEEeCCCChHHHHH
Confidence 999987665554443
No 144
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=20.29 E-value=2.9e+02 Score=20.98 Aligned_cols=51 Identities=14% Similarity=0.074 Sum_probs=34.4
Q ss_pred HHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEecc--CCCCCHHHH
Q 045072 53 ASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNI--NTRLDARTI 103 (556)
Q Consensus 53 a~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l--~~~~~~~~l 103 (556)
+.+|.+.|+.+...+.+-..+..+.+-++==+++.|...+.+ -+..+....
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~ 99 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAAR 99 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHH
Confidence 567777888888777777777778888887777777644433 234554433
No 145
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=20.26 E-value=3.2e+02 Score=25.04 Aligned_cols=62 Identities=10% Similarity=0.094 Sum_probs=41.0
Q ss_pred HHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccce-EeccCCCCCHHHHHHHHhccCCeEEEEecc
Q 045072 55 SLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAI-LNNINTRLDARTISVLLQHSESKLVLVDYQ 120 (556)
Q Consensus 55 ~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~-~v~l~~~~~~~~l~~~l~~~~~~~vi~~~~ 120 (556)
.+...++++|++|+|...-+.-.+++.+|- ..|+. .+.++. +.+. ..++++.++..++...+
T Consensus 152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak-~~G~~~vi~~~~--~~~k-~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAV-ALGAKSVTAIDI--SSEK-LALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHTTCCTTSEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHH-HHHHHHTTCSEEEETTT
T ss_pred HHHHhccCCCCEEEEECCCCcchHHHHHHH-HcCCcEEEEEec--hHHH-HHHHHHcCCeEEEeCCC
Confidence 344568999999999987666666666664 45653 344433 2333 45678889998886543
No 146
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=20.07 E-value=3.4e+02 Score=21.75 Aligned_cols=69 Identities=9% Similarity=0.083 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCCCCEEEEEcCChHHHHHHHHHhhhccceEeccCCCCCHHHHHHHH---hccCCeEEEEec
Q 045072 48 RCLQLASSLSSIGITRGHVVSVVAPNIPAMYEAHFAIPFTGAILNNINTRLDARTISVLL---QHSESKLVLVDY 119 (556)
Q Consensus 48 ~~~~la~~L~~~g~~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~v~l~~~~~~~~l~~~l---~~~~~~~vi~~~ 119 (556)
+...+...|... ++..+.|+++.....-...-.+...|..+..++..++..+-...+ +..+..++++++
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN 92 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 444455555443 456888998877666555555556788888888888876554444 445667777664
Done!