Query 045073
Match_columns 402
No_of_seqs 442 out of 1440
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 16:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 4.8E-33 1.7E-37 263.9 18.7 331 2-379 144-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 99.9 1.7E-24 5.9E-29 202.7 14.0 289 3-363 138-433 (451)
3 3o7q_A L-fucose-proton symport 99.9 2.8E-20 9.7E-25 173.4 22.3 286 3-361 136-430 (438)
4 4aps_A DI-OR tripeptide H+ sym 99.8 1.2E-19 4.3E-24 171.7 15.1 312 3-367 127-476 (491)
5 2gfp_A EMRD, multidrug resista 99.8 5E-19 1.7E-23 161.5 11.1 260 3-357 107-369 (375)
6 2cfq_A Lactose permease; trans 99.8 9.1E-19 3.1E-23 162.1 7.5 143 205-371 264-408 (417)
7 1pw4_A Glycerol-3-phosphate tr 99.6 2.5E-15 8.5E-20 140.4 15.7 186 150-368 25-212 (451)
8 2xut_A Proton/peptide symporte 99.6 3.8E-16 1.3E-20 148.9 9.0 82 289-370 419-510 (524)
9 3o7q_A L-fucose-proton symport 99.6 1.3E-14 4.6E-19 134.9 17.0 184 153-368 26-236 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.6 3E-14 1E-18 134.7 14.7 174 154-363 14-196 (491)
11 2gfp_A EMRD, multidrug resista 99.5 5.7E-14 1.9E-18 127.9 11.9 175 159-369 6-181 (375)
12 2xut_A Proton/peptide symporte 99.4 1.7E-12 5.8E-17 123.6 14.9 172 156-362 15-197 (524)
13 4gc0_A D-xylose-proton symport 99.3 2E-11 6.8E-16 115.2 12.8 159 205-367 60-224 (491)
14 2cfq_A Lactose permease; trans 98.9 1.8E-10 6.1E-15 106.3 -0.2 172 158-363 12-187 (417)
15 2g9p_A Antimicrobial peptide l 50.2 7.1 0.00024 18.2 1.1 14 219-232 2-15 (26)
16 3arc_T Photosystem II reaction 28.9 67 0.0023 16.7 3.3 12 88-99 18-29 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=4.8e-33 Score=263.89 Aligned_cols=331 Identities=17% Similarity=0.181 Sum_probs=230.6
Q ss_pred CCcchhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccccCCCCCchhHHHHHHhHH
Q 045073 2 YPLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAV 81 (402)
Q Consensus 2 ~~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i 81 (402)
++++++|++|++|+++|++..++.+.+..+|.++++.++..+....... ......||+.+.+..+
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~ 208 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS---------------WLNTDGWRYMFASECI 208 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT---------------TTTTTHHHHHHHTTHH
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc---------------cccchhhHHHhhhhhh
Confidence 3567899999999999999999999999999999999988876332211 2245689999999999
Q ss_pred HHHHHHHHHhhccCCchhHHhhhCChhHHHHHHHHhccccccccccCCCCCCCCCccccccchhhhhhhhhHHHHHHHHH
Q 045073 82 PAALTYYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDLTVATSAYPVPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 82 ~~~~~~~~~~~~pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
++++.++..+++||||||+.. +++.+++.+.+++..+++..++.....+ +......+........+.++........
T Consensus 209 ~~~~~~~~~~~~peSp~~L~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (491)
T 4gc0_A 209 PALLFLMLLYTVPESPRWLMS-RGKQEQAEGILRKIMGNTLATQAVQEIK--HSLDHGRKTGGRLLMFGVGVIVIGVMLS 285 (491)
T ss_dssp HHHHHHHHGGGSCCCHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTHHHHSCCTHHHHHHHHH
T ss_pred hhhhhhhhhhcCCCChHHHHH-cCchhHHHHhHHHhcCCchhHHHHHHHH--HHHHhhhhhhhHHHHhcccHHHHHHHHH
Confidence 999999999999999999854 5555666565555443322111100000 0000000000111111122334444555
Q ss_pred HHHHHHHHHHHHhhhhhhhhhcCcchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhccchhHHHHHHHHHHH
Q 045073 162 WFLLDIAFYTINLAQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMS 241 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~ 241 (402)
.+.+..+.+....|.+.+.+..+.+...... ......+..+++.+++++++||+|||+.++.+...+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~ 353 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIALL------------QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA 353 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccchhh------------HHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHH
Confidence 5556667777888888888887777664333 5556677788888899999999999999999988888
Q ss_pred HHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCccccccccccccccchhhhhhhHHHHHHH
Q 045073 242 ICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGK 321 (402)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~ 321 (402)
++++.++...... ......+....+...++..+..++.+.+.+|++|++.|+++.|+.+..++
T Consensus 354 ~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 354 IGMFSLGTAFYTQ-----------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQW 416 (491)
T ss_dssp HHHHHHHHHHHTT-----------------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-----------------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHH
Confidence 8777666543311 22223333333344445667778889999999999999999999999999
Q ss_pred HhHHHHhHhHHhhhhccC----CcchhhHHHHHHHHHHHhhhee-eeeccCCccccccccchh
Q 045073 322 AGAIVGAFGVQYYTQKGD----KQIKQSIITLAVVNFLGFLCSF-MVPETNGLSLEELSGEDK 379 (402)
Q Consensus 322 ~g~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~i~~~-~~~et~~~~~~~~~~~~~ 379 (402)
+++++++.+++.+.+... .+...+|++++++++++.++.+ ++||||++++||+++.-+
T Consensus 417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 999999988877654210 0445678888888888888776 569999999999876633
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.91 E-value=1.7e-24 Score=202.72 Aligned_cols=289 Identities=14% Similarity=0.153 Sum_probs=194.4
Q ss_pred CcchhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccccCCCCCch-hHHHHHHhHH
Q 045073 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYL-WRIVLMFGAV 81 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Wr~~f~~~~i 81 (402)
+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +..+ ||+.|++.++
T Consensus 138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----------------------~~~g~w~~~f~~~~~ 194 (451)
T 1pw4_A 138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-----------------------AWFNDWHAALYMPAF 194 (451)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH-----------------------HHTCCSTTCTHHHHH
T ss_pred chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhccHHHHHHHHHH
Confidence 456789999999999999999999999999999999998876 4456 9999999777
Q ss_pred HHHHH-HHHHhhccCCchhHHhhhCChhHHHHHHHHhccccccccccCCCCCCCCCccccccchhhhhhhhhHHHHHHHH
Q 045073 82 PAALT-YYWRMKMPETARYTALVEGNQKKAAVDMAKVLDTDLTVATSAYPVPVSPEASTYGLFSKEFVQKHGLHLLGTTS 160 (402)
Q Consensus 82 ~~~~~-~~~~~~~pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (402)
++++. ++..+++||+|+... ..+.++.. .+.+++ .++.++++....+...+...++ +.++...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 259 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQSCG--LPPIEEYK--------NDYPDD---YNEKAEQELTAKQIFMQYVLPN--KLLWYIAI 259 (451)
T ss_dssp HHHHHHHHHHHHCCCSSTTTC--CCSCTTTC--------CC----------------CCTHHHHHHTSSC--HHHHHHHH
T ss_pred HHHHHHHHHHhhccCCHhhcC--CCChhhhc--------cccccc---chhhhhcccccccchHHHHHcC--HHHHHHHH
Confidence 76654 445567899987521 11111000 000000 0000001111111111122221 24555555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh-cCcchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhcc--chhHHHHHHH
Q 045073 161 TWFLLDIAFYTINLAQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI--GRFIIQLGGF 237 (402)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~--grr~~~~~~~ 237 (402)
..+......+....+.|.++++ .|++..+.+. ......++.+++.++.+++.||+ |||+.+..+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~ 327 (451)
T 1pw4_A 260 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSW------------AYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 6666666777888899999887 7888876555 67777888999999999999999 9998887766
Q ss_pred HHHH-HHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCccccccccccccccchhhhhhhHH
Q 045073 238 LLMS-ICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGIS 316 (402)
Q Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~ 316 (402)
.+.. ++.+++.. .. ........+.....+++..+..+....+..|.+|++.|+++.|+.
T Consensus 328 ~~~~~~~~~~~~~-----~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 328 MTLVTIATIVYWM-----NP---------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp HHHHHHHHHHTTS-----CC---------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----hc---------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 5544 33222211 10 111222222223333333344455677889999999999999999
Q ss_pred HHHHHH-hHHHHhHhHHhhhhccCCcchhhHHHHHHHHHHHhhheeee
Q 045073 317 AAAGKA-GAIVGAFGVQYYTQKGDKQIKQSIITLAVVNFLGFLCSFMV 363 (402)
Q Consensus 317 ~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 363 (402)
+....+ |..++|.+.+.+.+.. ++...|++.+++.+++.++.+++
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFF--GWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999987 78889998888888887776655
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.86 E-value=2.8e-20 Score=173.39 Aligned_cols=286 Identities=12% Similarity=0.002 Sum_probs=177.7
Q ss_pred CcchhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhccccCccccc-ccccc-c-CCCCCchhHHHHHH
Q 045073 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFS-GIFLHVYNAPAFNR-NHVLS-A-QPQGDYLWRIVLMF 78 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~~~~~~~~~l~-~~~~~~~~~~~~~~-~~~~~-~-~~~~~~~Wr~~f~~ 78 (402)
+...++++|++|+++|++++++.+.+..+|.++++.+++.+. ...+.. ++..... .+... . ......+||+.|++
T Consensus 136 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 214 (438)
T 3o7q_A 136 TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQ-SQDVLDKMSPEQLSAYKHSLVLSVQTPYMI 214 (438)
T ss_dssp HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCC-CHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cccccccCCcchhhhhhhhhhhhHHHHHHH
Confidence 456789999999999999999999999999999999998886 211000 0000000 00000 0 00001129999987
Q ss_pred hHHHHHHHHHHHh--hccCCchhHHhhhCChhHHHHHHHHhccccccccccCCCCCCCCCccccccchhhhhhhhhHHHH
Q 045073 79 GAVPAALTYYWRM--KMPETARYTALVEGNQKKAAVDMAKVLDTDLTVATSAYPVPVSPEASTYGLFSKEFVQKHGLHLL 156 (402)
Q Consensus 79 ~~i~~~~~~~~~~--~~pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (402)
.++..++..+..+ ..||+++.. +++++ +....+.++...+++ .++
T Consensus 215 ~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~---------------------------~~~~~~~~~~~~~~~---~~~ 261 (438)
T 3o7q_A 215 IVAIVLLVALLIMLTKFPALQSDN---HSDAK---------------------------QGSFSASLSRLARIR---HWR 261 (438)
T ss_dssp HHHHHHHHHHHHHHCCCCCCTTTC---CCCSS---------------------------TTSHHHHHHHHTTCS---HHH
T ss_pred HHHHHHHHHHHHHHHcCCcccccc---ccccc---------------------------ccchhhhHHHHHhCh---HHH
Confidence 5555544333332 256654320 00000 000000111111111 333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh-hhhc-CcchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhccchhHHHH
Q 045073 157 GTTSTWFLLDIAFYTINLAQKDI-YPAT-GIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQL 234 (402)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~ 234 (402)
...+..+......+....+.|.+ +++. |.+..+.+. ......++.+++.++.++++||+|||+.+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~ 329 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAAN------------YLTGTMVCFFIGRFTGTWLISRFAPHKVLA 329 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 44444445555666777788888 7664 888876555 667778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCccccccccccccccchhhhhhh
Q 045073 235 GGFLLMSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHG 314 (402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~ 314 (402)
.+.++..++.+++... ... .....+ ...+++.....+..+++..|.+|++ |+.+.+
T Consensus 330 ~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 385 (438)
T 3o7q_A 330 AYALIAMALCLISAFA---------------------GGH-VGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSS 385 (438)
T ss_dssp HHHHHHHHHHHHHHHC---------------------CHH-HHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHH
T ss_pred HHHHHHHHHHHHHHHc---------------------CCc-HHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhh
Confidence 8887776666554442 122 222222 2223334445567888889999977 888888
Q ss_pred HHHHHHHHhHHHHhHhHHhhhhccCCc-chhhHHHHHHHHHHHhhhee
Q 045073 315 ISAAAGKAGAIVGAFGVQYYTQKGDKQ-IKQSIITLAVVNFLGFLCSF 361 (402)
Q Consensus 315 ~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~ 361 (402)
+.. .+.+++.++|.+.+.+.+.. + ++..|.+.+++.++..++.+
T Consensus 386 ~~~-~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 386 FIV-MTIIGGGIVTPVMGFVSDAA--GNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHH-HTTHHHHHHHHHHHHHHHHH--TSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHH
Confidence 877 67799999999999999987 5 88888876666555544433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.82 E-value=1.2e-19 Score=171.66 Aligned_cols=312 Identities=8% Similarity=-0.038 Sum_probs=169.3
Q ss_pred CcchhhhhhccCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccccCCCCCchhHHHHHHhH
Q 045073 3 PLSAVIMSEYANKRT--RGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGA 80 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~--Rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~ 80 (402)
+...++++|++|+++ |+.+.++++.+..+|.++++.+++.+. +..+||+.|++.+
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~g~~~~f~~~~ 183 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQ-----------------------EAAGYHVAFSLAA 183 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHSCHHHHHHHHH
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHH-----------------------hhhhHHHHHHHHH
Confidence 456789999999988 777888899999999999999999887 5578999999977
Q ss_pred HHHHHHHHHHhhc-cCCchh---HHhhhCChhHHHHHHHH---------------hccccccccccCCCCCC-------C
Q 045073 81 VPAALTYYWRMKM-PETARY---TALVEGNQKKAAVDMAK---------------VLDTDLTVATSAYPVPV-------S 134 (402)
Q Consensus 81 i~~~~~~~~~~~~-pesp~~---l~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-------~ 134 (402)
+..++.++...+. |+..+. ....+.++++..+..+. ....+.+ .++..... .
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 261 (491)
T 4aps_A 184 IGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS--LPAYINLLTIVAIAIP 261 (491)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhhhHHHHHHH
Confidence 6666544443322 221100 00001111121111111 0000000 00000000 0
Q ss_pred ---CCccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-cCcchhhhhhhhHHHHHHHhHHHHHHHH
Q 045073 135 ---PEASTYGLFSKEFVQKHGLHLLGTTSTWFLLDIAFYTINLAQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVAL 210 (402)
Q Consensus 135 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (402)
......+.......++.....+......+.....+.....+.|.+.++ .+.+....+. ......
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 329 (491)
T 4aps_A 262 VFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSW------------FQSLNP 329 (491)
T ss_dssp HHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGG------------GTTHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHH------------Hhccch
Confidence 000000000000011111112223323333333444455555666654 4444333232 445556
Q ss_pred hhhhhhhhhHHHhhhccchhHHHH-----HHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHH
Q 045073 211 FATVPGYWFTVFLIDRIGRFIIQL-----GGFLLMSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTL 285 (402)
Q Consensus 211 ~~~~~g~~~~g~l~dr~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (402)
+..+++..+.+++.||+|||+... .+..+.+++++++........... ........+..+..
T Consensus 330 ~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~ 396 (491)
T 4aps_A 330 LFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG-------------KVSPLWLVGSWALV 396 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT-------------TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC-------------CccHHHHHHHHHHH
Confidence 667777788999999999986544 555555555554444322111000 11222333333333
Q ss_pred HHHhhCCccccccccccccccchhhhhhhHHHHHHHHhHHHHhHhHHhhhhccCCcchhhHHHHHHHHHHHhhheeee-e
Q 045073 286 FFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIITLAVVNFLGFLCSFMV-P 364 (402)
Q Consensus 286 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~ 364 (402)
+.+.....+..+.++.|.+|++.|+++.|+.+....+|.++++.+.+.+.+. ++...|.+.+++++++.++.+++ +
T Consensus 397 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 397 ILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK---SEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS---STTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455667888999999999999999999999999999999998888765 66677777777777776665544 5
Q ss_pred ccC
Q 045073 365 ETN 367 (402)
Q Consensus 365 et~ 367 (402)
+.+
T Consensus 474 ~~~ 476 (491)
T 4aps_A 474 RIQ 476 (491)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.78 E-value=5e-19 Score=161.51 Aligned_cols=260 Identities=14% Similarity=0.115 Sum_probs=167.3
Q ss_pred CcchhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCcccccccccccCCCCCchhHHHHHHhHHH
Q 045073 3 PLSAVIMSEYANKRTRGAFIAAVFAMQGMGILFAGVISLIFSGIFLHVYNAPAFNRNHVLSAQPQGDYLWRIVLMFGAVP 82 (402)
Q Consensus 3 ~~~~~~i~e~~~~~~Rg~~~~~~~~~~~lG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~f~~~~i~ 82 (402)
+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +..+||+.|++.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-----------------------~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 107 VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD-----------------------TMWNWRACYLFLLVL 163 (375)
T ss_dssp HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS-----------------------CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----------------------HhccHHHHHHHHHHH
Confidence 455788999999999999999999999999999999998875 557899999987777
Q ss_pred HHHHHH-HHhhccCCchhHHhhhCChhHHHHHHHHhccccccccccCCCCCCCCCccccccchhhhhhhhhHHHHHHHHH
Q 045073 83 AALTYY-WRMKMPETARYTALVEGNQKKAAVDMAKVLDTDLTVATSAYPVPVSPEASTYGLFSKEFVQKHGLHLLGTTST 161 (402)
Q Consensus 83 ~~~~~~-~~~~~pesp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (402)
.++..+ ..+++||+|+. +++++ +..+.. ++..+++ .++...+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~----~~~~~-------------------------~~~~~~----~~~~~~~---~~~~~~~~ 207 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRPV----DAPRT-------------------------RLLTSY----KTLFGNS---GFNCYLLM 207 (375)
T ss_dssp HHHHHCCCCCSSCCCSTT----TCCCC-------------------------CTTTCS----THHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHCcccCCC----Ccccc-------------------------cHHHHH----HHHhcCc---chHHHHHH
Confidence 666554 45568887643 11100 000111 1111112 33444444
Q ss_pred HHHHHHHHHHHHhhhhhhhhh-cCcchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhccchhHHHHHHHHH-
Q 045073 162 WFLLDIAFYTINLAQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLL- 239 (402)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~- 239 (402)
.+......+....+.|.++++ .|.++.+.+. ......++.+++.++.+++.||++++. ..+...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~ 273 (375)
T 2gfp_A 208 LIGGLAGIAAFEACSGVLMGAVLGLSSMTVSI------------LFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICC 273 (375)
T ss_dssp HHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHH------------HHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 455555666777788888876 7777665544 667777888889999999999998732 222222
Q ss_pred HHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCccccccccccccccchhhhhhhHHHHH
Q 045073 240 MSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAAA 319 (402)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~ 319 (402)
...+...+..... . ..............+++.....+...++..|.+| +.|+++.|+.+..
T Consensus 274 ~~~~~~~~~~~~~--~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~ 334 (375)
T 2gfp_A 274 LLAGLLMWIPDWF--G----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGL 334 (375)
T ss_dssp HHTSSSSSHHHHH--H----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh--c----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHH
Confidence 1111111111100 0 0111222222222233334455677888999999 8999999999999
Q ss_pred HHHhHHHHhHhHHhhhhccCCcchhhHHHHHHHHHHHh
Q 045073 320 GKAGAIVGAFGVQYYTQKGDKQIKQSIITLAVVNFLGF 357 (402)
Q Consensus 320 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 357 (402)
..+|..++|.+.+.+.+.. ++...+.+ .++.+++.
T Consensus 335 ~~~g~~~~~~~~g~l~~~~--~~~~~~~~-~~~~~~~~ 369 (375)
T 2gfp_A 335 QNIGSGVLASLSAMLPQTG--QGSLGLLM-TLMGLLIV 369 (375)
T ss_dssp HHHHHHCCSTTCTHHHHHH--HHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC--cccHHHHH-HHHHHHHH
Confidence 9999999999999887754 55555554 33333333
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.75 E-value=9.1e-19 Score=162.11 Aligned_cols=143 Identities=15% Similarity=0.046 Sum_probs=97.6
Q ss_pred HHHHHHhhhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHH
Q 045073 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
...+..++.+++.++.++++||+|||+.+..+..+.++..+.+... .+.+.... ....
T Consensus 264 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~-~~~l 321 (417)
T 2cfq_A 264 VTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------------------TSALEVVI-LKTL 321 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---------------------CSHHHHHH-HTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---------------------ccHHHHHH-HHHH
Confidence 4556667777888899999999999999887776665554333221 12222222 1111
Q ss_pred HHHHhhCCccccccccccccccchhhhhhhHH-HHHHHHhHHHHhHhHHhhhhccCCcchhhHHHHHHHHHHHhhheee-
Q 045073 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGIS-AAAGKAGAIVGAFGVQYYTQKGDKQIKQSIITLAVVNFLGFLCSFM- 362 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~-~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~- 362 (402)
.........+..+.+++|.+|++.|+++.++. +....+|++++|.+.+.+.+.. ++...|.+.+++.+++.++.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~--g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 322 HMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI--GFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS--HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHhh
Confidence 11111122234567889999999999999995 7788899999999999988866 7778888888888887766554
Q ss_pred eeccCCccc
Q 045073 363 VPETNGLSL 371 (402)
Q Consensus 363 ~~et~~~~~ 371 (402)
.||+++.++
T Consensus 400 ~~~~~~~~~ 408 (417)
T 2cfq_A 400 LSGPGPLSL 408 (417)
T ss_dssp SCCSCTTCS
T ss_pred hcCCCchHH
Confidence 466554443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.64 E-value=2.5e-15 Score=140.36 Aligned_cols=186 Identities=12% Similarity=-0.012 Sum_probs=139.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhccch
Q 045073 150 KHGLHLLGTTSTWFLLDIAFYTINLAQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGR 229 (402)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~gr 229 (402)
..++.+....+..+......+....+.|.+.+++ .+..+.+. ......++..++.++.|+++||+||
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~g~ 91 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGF------------ALSGISIAYGFSKFIMGSVSDRSNP 91 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHH------------HHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHH------------HHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 3344566666666666666667777888888888 88777665 7777888889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCccccccccccccccchh
Q 045073 230 FIIQLGGFLLMSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLR 309 (402)
Q Consensus 230 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 309 (402)
|+++..+.++.+++.++.++.... . .+.+.+++ ..+..+.+.....+...+++.|.+|++.|
T Consensus 92 r~~l~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~l~~-~~~l~G~~~~~~~~~~~~~i~~~~~~~~r 153 (451)
T 1pw4_A 92 RVFLPAGLILAAAVMLFMGFVPWA-T----------------SSIAVMFV-LLFLCGWFQGMGWPPCGRTMVHWWSQKER 153 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHH-H----------------SSSSHHHH-HHHHHHHHHHHTHHHHHHHHHTTCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhc-c----------------ccHHHHHH-HHHHHHHHhhhccchHHHHHHHHCCchhh
Confidence 999999999888888777662110 0 22223333 33333443444566778899999999999
Q ss_pred hhhhhHHHHHHHHhHHHHhHhHHhhhhccCCc-chhhHHHHHHHHHHHhhhee-eeeccCC
Q 045073 310 STCHGISAAAGKAGAIVGAFGVQYYTQKGDKQ-IKQSIITLAVVNFLGFLCSF-MVPETNG 368 (402)
Q Consensus 310 ~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~~-~~~et~~ 368 (402)
+++.++.+....+|.+++|.+.+.+.+.. + |+..|++.+++.++..++.+ ++||++.
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99999999999999999999998877766 7 99999998888777665544 4576543
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.63 E-value=3.8e-16 Score=148.91 Aligned_cols=82 Identities=7% Similarity=-0.042 Sum_probs=55.0
Q ss_pred hhCCccccccccccccccchhhhhhhHHHHHHHHhHHHHhHhHHhhhhccCCcc---------hhhHHHHHHHHHHHhhh
Q 045073 289 NFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQI---------KQSIITLAVVNFLGFLC 359 (402)
Q Consensus 289 ~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~i~~i~ 359 (402)
.....+..+++..|..|++.|+++.|+.+....+|+.++|.+.+.+.+..+.+| ...|++.+++.+++.++
T Consensus 419 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (524)
T 2xut_A 419 EVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIV 498 (524)
T ss_dssp HHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHH
Confidence 344456677889999999999999999999999999999999998876321011 23366777777776666
Q ss_pred eeee-eccCCcc
Q 045073 360 SFMV-PETNGLS 370 (402)
Q Consensus 360 ~~~~-~et~~~~ 370 (402)
.+++ +++++++
T Consensus 499 ~~~~~~~~~~~~ 510 (524)
T 2xut_A 499 FALYARSYQMQD 510 (524)
T ss_dssp HC----------
T ss_pred HHHHHHHhccch
Confidence 5544 6555443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.61 E-value=1.3e-14 Score=134.89 Aligned_cols=184 Identities=11% Similarity=0.033 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhccchhHH
Q 045073 153 LHLLGTTSTWFLLDIAFYTINLAQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFII 232 (402)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~ 232 (402)
+.++......+.............|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~dr~g~r~~ 93 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAG 93 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHH------------HHHHHHHHHHTTHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhcchHH
Confidence 3455555566666666677777888888999999887666 7788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCccccccccccccccchhhhh
Q 045073 233 QLGGFLLMSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTC 312 (402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 312 (402)
+..+.++.+++.++...... ......+.+..+..+.+.....+...++++|.+|++.|+.+
T Consensus 94 l~~~~~~~~~~~~~~~~~~~-------------------~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~ 154 (438)
T 3o7q_A 94 IITGLFLYALGAALFWPAAE-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFR 154 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc-------------------cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHH
Confidence 99999988888777633211 22233344444444444445556778899999999999999
Q ss_pred hhHHHHHHHHhHHHHhHhHHhhh-hccCCc------------------------chhhHHHHHHHHHHHhhheeee--ec
Q 045073 313 HGISAAAGKAGAIVGAFGVQYYT-QKGDKQ------------------------IKQSIITLAVVNFLGFLCSFMV--PE 365 (402)
Q Consensus 313 ~~~~~~~~~~g~~i~~~~~~~~~-~~~~~~------------------------~~~~~~~~~~~~~i~~i~~~~~--~e 365 (402)
.++.+....+|..+++.+.+.+. +..+ . |++.|++.+++.++..++.++. ||
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVP-HQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSC-CCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-cccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999998887 4431 2 7888877776666555444433 55
Q ss_pred cCC
Q 045073 366 TNG 368 (402)
Q Consensus 366 t~~ 368 (402)
+++
T Consensus 234 ~~~ 236 (438)
T 3o7q_A 234 LQS 236 (438)
T ss_dssp CTT
T ss_pred ccc
Confidence 443
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.57 E-value=3e-14 Score=134.66 Aligned_cols=174 Identities=14% Similarity=0.055 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhh------cCcchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhc-
Q 045073 154 HLLGTTSTWFLLDIAFYTINLAQKDIYPA------TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDR- 226 (402)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr- 226 (402)
.++......+.....++....+.+.++++ +|.+..+.+. ......++..++.++.|+++||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~ 81 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAAS------------IMAIYASMVYLSGTIGGFVADRI 81 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555566666667777777777777754 7888887665 7778888899999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCcccccccccccccc
Q 045073 227 IGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA 306 (402)
Q Consensus 227 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 306 (402)
+|||+++..+.++.+++.++.... .+.+. +.+..+..+.+.....+...++++|.+|+
T Consensus 82 ~g~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 139 (491)
T 4aps_A 82 IGARPAVFWGGVLIMLGHIVLALP---------------------FGASA-LFGSIILIIIGTGFLKPNVSTLVGTLYDE 139 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSC---------------------CSTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHh---------------------hhHHH-HHHHHHHHHHHHHhccchHHHHHHHHcCc
Confidence 899999999988887777665542 12222 23333333333444556778889999999
Q ss_pred ch--hhhhhhHHHHHHHHhHHHHhHhHHhhhhccCCcchhhHHHHHHHHHHHhhheeee
Q 045073 307 RL--RSTCHGISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIITLAVVNFLGFLCSFMV 363 (402)
Q Consensus 307 ~~--r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 363 (402)
+. |+.+.++.+....+|..++|.+.+.+.+.. +|+..|++.++..+++.++.++.
T Consensus 140 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 140 HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA--GYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHh
Confidence 88 777888888999999999999999998877 89999999887777766665543
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.52 E-value=5.7e-14 Score=127.91 Aligned_cols=175 Identities=11% Similarity=0.004 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCcchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhccchhHHHHHHHH
Q 045073 159 TSTWFLLDIAFYTINLAQKDIYPATGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFL 238 (402)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~ 238 (402)
....+.............|.+.+++|.+..+.+. ......++..++.++.|+++||+|||+.+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 73 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQS------------VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMS 73 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHH------------HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 3344444455555566678888889998887665 7777888888999999999999999999999988
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCccccccccccccccchhhhhhhHHHH
Q 045073 239 LMSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPARLRSTCHGISAA 318 (402)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~ 318 (402)
+.+++.++..... ......+.....+.+.....+...+++.|.+|++.|+++.++.+.
T Consensus 74 ~~~~~~~~~~~~~----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (375)
T 2gfp_A 74 IFMLATLVAVTTS----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNM 131 (375)
T ss_dssp HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHH
T ss_pred HHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHH
Confidence 8888877766531 223333333344443444556677888999999999999999999
Q ss_pred HHHHhHHHHhHhHHhhhhccCCcchhhHHHHHHHHHHHhhhee-eeeccCCc
Q 045073 319 AGKAGAIVGAFGVQYYTQKGDKQIKQSIITLAVVNFLGFLCSF-MVPETNGL 369 (402)
Q Consensus 319 ~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~et~~~ 369 (402)
...+|..++|.+.+.+.+.. +|+..+.+.+++.++..+..+ ++||++++
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMW--NWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHH--HHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHhhHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 99999999999999988776 899999988888877766444 45776543
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.43 E-value=1.7e-12 Score=123.62 Aligned_cols=172 Identities=10% Similarity=0.003 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh-hcC------cchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhcc-
Q 045073 156 LGTTSTWFLLDIAFYTINLAQKDIYP-ATG------IVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRI- 227 (402)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~- 227 (402)
+...+..+.....+++...+++.++. ++| ++..+.+. ......++.+++.+++|+++||+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~~ 82 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKD------------VFHSFVIGVYFFPLLGGWIADRFF 82 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHH------------HHHHHHHHHHHTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555666777777777664 578 88776655 67777888889999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCccccccccccccccc
Q 045073 228 GRFIIQLGGFLLMSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPAR 307 (402)
Q Consensus 228 grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 307 (402)
|||+.+..+.++.+++.++.... ......+.+..+..+.+.....+...+++.|.+|++
T Consensus 83 g~r~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 141 (524)
T 2xut_A 83 GKYNTILWLSLIYCVGHAFLAIF---------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS 141 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHT---------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHh---------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc
Confidence 99999999888887777666553 202233333344444445556677888999999999
Q ss_pred hhhhhhhH---HHHHHHHhHHHHhHhHHhhhhccCCcchhhHHHHHHHHHHHhhheee
Q 045073 308 LRSTCHGI---SAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIITLAVVNFLGFLCSFM 362 (402)
Q Consensus 308 ~r~~~~~~---~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~ 362 (402)
.|+++.+. .+....+|..++|.+.+.+.+.. +|+..|++.+++.+++.++.++
T Consensus 142 ~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 142 NKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF--GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS--CHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHHHHH
Confidence 99876666 88889999999999999888766 8999999888877766655443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.29 E-value=2e-11 Score=115.20 Aligned_cols=159 Identities=15% Similarity=0.035 Sum_probs=106.3
Q ss_pred HHHHHHhhhhhhhhhHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCccccCCchHHHHHHHHHH
Q 045073 205 MFLVALFATVPGYWFTVFLIDRIGRFIIQLGGFLLMSICMAILGARYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLT 284 (402)
Q Consensus 205 ~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (402)
..+...++.++|++++|+++||+|||+.++++.++..++.++.++.......... .......-......+++..+.
T Consensus 60 ~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~----~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINP----DNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSS----SSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc----hhHHHHHHhhhHHHHHHHHHH
Confidence 5666778899999999999999999999999998888887776643211000000 000000002233445555555
Q ss_pred HHHHhhCCccccccccccccccchhhhhhhHHHHHHHHhHHHHhHhHHhhhhccCC------cchhhHHHHHHHHHHHhh
Q 045073 285 LFFANFGPNSTTFIVPAELFPARLRSTCHGISAAAGKAGAIVGAFGVQYYTQKGDK------QIKQSIITLAVVNFLGFL 358 (402)
Q Consensus 285 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~i 358 (402)
.+.+..+..+...++++|..|++.|+...++.+....+|..+++............ .|+..+.+..+..++..+
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLM 215 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhh
Confidence 56555666677888999999999999999999988888888887666555433211 455566666666666666
Q ss_pred heeeeeccC
Q 045073 359 CSFMVPETN 367 (402)
Q Consensus 359 ~~~~~~et~ 367 (402)
..+++||+.
T Consensus 216 ~~~~~peSp 224 (491)
T 4gc0_A 216 LLYTVPESP 224 (491)
T ss_dssp HGGGSCCCH
T ss_pred hhhcCCCCh
Confidence 666678873
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.88 E-value=1.8e-10 Score=106.32 Aligned_cols=172 Identities=13% Similarity=-0.043 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh-cCcchhhhhhhhHHHHHHHhHHHHHHHHhhhhhhhhhHHHhhhccchhHHHHHH
Q 045073 158 TTSTWFLLDIAFYTINLAQKDIYPA-TGIVRKAAAMDAIEEVFRISKAMFLVALFATVPGYWFTVFLIDRIGRFIIQLGG 236 (402)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~grr~~~~~~ 236 (402)
.....+.....+.....+.|.++++ +|.++.+.+. ......++..++.++.|+++||+|||++++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~ 79 (417)
T 2cfq_A 12 FGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGI------------IFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI 79 (417)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHH------------HHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3333344444455556677887754 7998887665 77777888999999999999999999999887
Q ss_pred HHHHHHHHHHHHH-HhhcccCCCCCCCCCCCccccCCchHHHHHHHHHHHHHHhhCCcccccccccccccc--chhhhhh
Q 045073 237 FLLMSICMAILGA-RYDSLRGKKCDPKKDPLHEYCDGNHAWFMILYGLTLFFANFGPNSTTFIVPAELFPA--RLRSTCH 313 (402)
Q Consensus 237 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~ 313 (402)
..+.++....... ....... ........+.....+...... .....+..+. +.|+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~ 140 (417)
T 2cfq_A 80 ITGMLVMFAPFFIFIFGPLLQ---------------YNILVGSIVGGIYLGFCFNAG----APAVEAFIEKVSRRSNFEF 140 (417)
T ss_dssp HHHTTSCHHHHHHHTHHHHHH---------------TTCCHHHHGGGSSTTHHHHTT----HHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHhhhhcccch
Confidence 6655432211110 0000000 000000000000000000111 1122233332 3456667
Q ss_pred hHHHHHHHHhHHHHhHhHHhhhhccCCcchhhHHHHHHHHHHHhhheeee
Q 045073 314 GISAAAGKAGAIVGAFGVQYYTQKGDKQIKQSIITLAVVNFLGFLCSFMV 363 (402)
Q Consensus 314 ~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~ 363 (402)
|.......+|..++|.+.+.+.+. +|+..|++.++..++..+..++.
T Consensus 141 g~~~~~~~~g~~~~~~l~~~l~~~---~~~~~f~~~~~~~~~~~~~~~~~ 187 (417)
T 2cfq_A 141 GRARMFGCVGWALGASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp HHHSSSTTTHHHHHHHHHHHHHHH---CSHHHHTTTTTTTTTHHHHSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHHHc
Confidence 777777788889999988888764 77888877666554444444444
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=50.17 E-value=7.1 Score=18.23 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=11.2
Q ss_pred hHHHhhhccchhHH
Q 045073 219 FTVFLIDRIGRFII 232 (402)
Q Consensus 219 ~~g~l~dr~grr~~ 232 (402)
+.|.++.++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788999999854
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=28.90 E-value=67 Score=16.68 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=8.1
Q ss_pred HHHhhccCCchh
Q 045073 88 YWRMKMPETARY 99 (402)
Q Consensus 88 ~~~~~~pesp~~ 99 (402)
+...+.+|.|+.
T Consensus 18 FFAI~FRePPri 29 (32)
T 3arc_T 18 FFAIFFREPPRI 29 (32)
T ss_dssp HHHHHTSCCCCC
T ss_pred HHhhhhcCCCCC
Confidence 334567899875
Done!