BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045074
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GWC|A Chain A, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|B Chain B, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
pdb|1GWC|C Chain C, The Structure Of A Tau Class Glutathione S-Transferase
From Wheat, Active In Herbicide Detoxification
Length = 230
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 1 VDIAYIPFVERFQIF--LSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEF 57
VD+A + ++ LS + +D A P LAAW+E +LDA K+ D +L+EF
Sbjct: 161 VDVALGGVLSWMKVTEALSGDKIFD-AAKTPLLAAWVERFIELDAAKAALPDVGRLLEF 218
>pdb|3VWX|A Chain A, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|B Chain B, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|C Chain C, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|D Chain D, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
Length = 222
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 29 PKLAAWIEELNKLDAY-KSTKADPKQLVEFYRSR 61
PKL+AW++ L L Y ++ A KQLV +S+
Sbjct: 183 PKLSAWLKSLQSLPFYEEANGAGAKQLVAMVKSK 216
>pdb|1OYJ|A Chain A, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|B Chain B, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|C Chain C, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione.
pdb|1OYJ|D Chain D, Crystal Structure Solution Of Rice Gst1 (Osgstu1) In
Complex With Glutathione
Length = 231
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 1 VDIAYIPFVERFQIFLSEEFKYDITAG------RPKLAAWIEELNKLDAYKSTKADPKQL 54
VD+A +PF F + Y+ G P+LAAW ++D+ P+++
Sbjct: 165 VDVALVPFTAWF-------YSYERCGGFSVEEVAPRLAAWARRCGRIDSVVKHLPSPEKV 217
Query: 55 VEF 57
+F
Sbjct: 218 YDF 220
>pdb|4HI7|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
pdb|4HI7|B Chain B, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
Length = 228
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 25 TAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYRSR 61
A PKL+AWI+ L +L Y +Q V +S+
Sbjct: 179 AAKYPKLSAWIKRLEQLPYYAENSTGAQQFVAAVKSK 215
>pdb|2GWG|A Chain A, Crystal Structure Of 4-Oxalomesaconate Hydratase, Ligj,
From Rhodopseudomonas Palustris, Northeast Structural
Genomics Target Rpr66.
pdb|2GWG|B Chain B, Crystal Structure Of 4-Oxalomesaconate Hydratase, Ligj,
From Rhodopseudomonas Palustris, Northeast Structural
Genomics Target Rpr66
Length = 350
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 41 LDAYKSTKADPKQLVEFYRSRFVVQFVEPSSEPAISRLRSALNQLVAWFVKSRIIK 96
+D + PK L E +R+R + +PS P +S L+ + ++L A +++++ K
Sbjct: 3 IDIHGHYTTAPKAL-EDWRNRQIAGIKDPSVXPKVSELKISDDELQASIIENQLKK 57
>pdb|4AGS|A Chain A, Leishmania Tdr1 - A Unique Trimeric Glutathione
Transferase
pdb|4AGS|B Chain B, Leishmania Tdr1 - A Unique Trimeric Glutathione
Transferase
pdb|4AGS|C Chain C, Leishmania Tdr1 - A Unique Trimeric Glutathione
Transferase
Length = 471
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 2 DIAYIPFVERFQIFLSEEFKYDITAGRPKLAAWIEELNKLDAYKSTKADPKQLVEFYR 59
D+A +PF+ R + L YD+ P+ A + + + T Q +E YR
Sbjct: 180 DVALVPFLVRLKPALXYYAGYDVFCKAPRXKALWAAAAQRASVRETSPTAAQCIENYR 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,772,902
Number of Sequences: 62578
Number of extensions: 88591
Number of successful extensions: 300
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 8
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)