BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045076
(145 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E08|A Chain A, Crystal Structure Of Drosophila Melanogaster Dj-1beta
pdb|4E08|B Chain B, Crystal Structure Of Drosophila Melanogaster Dj-1beta
Length = 190
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 11 VKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA 70
V+I+ D ++ FD++ LP + + + ES ++ +++ Q S G L AA+CA+P
Sbjct: 52 VQILPDTSLAQVASDKFDVVVLPGGLGGSNAMGESSLVGDLLRSQESGGGLIAAICAAPT 111
Query: 71 VALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVE 130
V L G+ G T YPS QL + + V +DG ++T+RGPGT EFA+ + E
Sbjct: 112 V-LAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGNLITSRGPGTAYEFALKIAE 170
Query: 131 QLYRKGKADEVS 142
+L K K EV+
Sbjct: 171 ELAGKEKVQEVA 182
>pdb|3B36|A Chain A, Structure Of M26l Dj-1
Length = 192
Score = 80.5 bits (197), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 53 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 112
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 113 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 171
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 172 VEALNGKEVAAQVKAPL 188
>pdb|1PE0|A Chain A, Crystal Structure Of The K130r Mutant Of Human Dj-1
pdb|1PE0|B Chain B, Crystal Structure Of The K130r Mutant Of Human Dj-1
Length = 197
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLARDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|3CZA|A Chain A, Crystal Structure Of E18d Dj-1
Length = 197
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|3CY6|A Chain A, Crystal Structure Of E18q Dj-1
Length = 197
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|2R1U|A Chain A, Dj-1 Activation By Catechol Quinone Modification
pdb|2R1U|B Chain B, Dj-1 Activation By Catechol Quinone Modification
Length = 187
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 49 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 108
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 109 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 167
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 168 VEALNGKEVAAQVKAPL 184
>pdb|3CZ9|A Chain A, Crystal Structure Of E18l Dj-1
Length = 197
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|3SF8|B Chain B, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|1UCF|A Chain A, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1UCF|B Chain B, The Crystal Structure Of Dj-1, A Protein Related To Male
Fertility And Parkinson's Disease
pdb|1P5F|A Chain A, Crystal Structure Of Human Dj-1
pdb|1Q2U|A Chain A, Crystal Structure Of Dj-1RS AND IMPLICATION ON FAMILIAL
PARKINSON'S Disease
pdb|2OR3|A Chain A, Pre-Oxidation Complex Of Human Dj-1
pdb|2OR3|B Chain B, Pre-Oxidation Complex Of Human Dj-1
Length = 189
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|2RK4|A Chain A, Structure Of M26i Dj-1
Length = 197
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|1J42|A Chain A, Crystal Structure Of Human Dj-1
Length = 189
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 80/137 (58%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGCGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|3BWE|A Chain A, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|B Chain B, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|C Chain C, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|D Chain D, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|E Chain E, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|F Chain F, Crystal Structure Of Aggregated Form Of Dj1
pdb|3BWE|G Chain G, Crystal Structure Of Aggregated Form Of Dj1
Length = 189
Score = 79.0 bits (193), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P ++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|1PDV|A Chain A, Crystal Structure Of Human Dj-1, P 31 2 1 Space Group
pdb|1PDW|A Chain A, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|B Chain B, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|C Chain C, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|D Chain D, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|E Chain E, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|F Chain F, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|G Chain G, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
pdb|1PDW|H Chain H, Crystal Structure Of Human Dj-1, P 1 21 1 Space Group
Length = 197
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P ++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKXXNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|3B38|A Chain A, Structure Of A104v Dj-1
Length = 192
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L A +CA P
Sbjct: 53 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAVICAGP 112
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 113 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 171
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 172 VEALNGKEVAAQVKAPL 188
>pdb|2RK3|A Chain A, Structure Of A104t Dj-1
Length = 197
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L A +CA P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIATICAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|2R1T|B Chain B, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|B Chain B, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+ A P
Sbjct: 49 VVIXPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP 108
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 109 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 167
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 168 VEALNGKEVAAQVKAPL 184
>pdb|3EZG|A Chain A, Crystal Structure Of E18q Dj-1 With Oxidized C106
Length = 196
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+ A P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|3F71|A Chain A, Crystal Structure Of E18d Dj-1 With Oxidized C106
Length = 196
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+ A P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|2R1T|A Chain A, Dopamine Quinone Conjugation To Dj-1
pdb|2R1V|A Chain A, Norepinephrine Quinone Conjugation To Dj-1
Length = 187
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+ A P
Sbjct: 49 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIAAGP 108
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 109 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 167
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 168 VEALNGKEVAAQVKAPL 184
>pdb|3CYF|A Chain A, Crystal Structure Of E18n Dj-1
Length = 197
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+ A P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|1SOA|A Chain A, Human Dj-1 With Sulfinic Acid
Length = 189
Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+ A P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|3SF8|A Chain A, Structural Insights Into Thiol Stabilization Of Dj-1
Length = 191
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+ A P
Sbjct: 50 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 109
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ EFA+A+
Sbjct: 110 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFEFALAI 168
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 169 VEALNGKEVAAQVKAPL 185
>pdb|3B3A|A Chain A, Structure Of E163kR145E DJ-1
Length = 192
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+CA P
Sbjct: 53 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAICAGP 112
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+ V++DG ++T+RGPGT+ +FA+A+
Sbjct: 113 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENEVEKDGLILTSRGPGTSFKFALAI 171
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 172 VEALNGKEVAAQVKAPL 188
>pdb|2RK6|A Chain A, Structure Of E163k Dj-1
Length = 192
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 11 VKIVADALVSDCR-DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
V I DA + D + + +D++ LP A NL ES ++ I+K+Q + L AA+ A P
Sbjct: 53 VVICPDASLEDAKKEGPYDVVVLPGGNLGAQNLSESAAVKEILKEQENRKGLIAAIXAGP 112
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATV-ESRVQQDGKVVTTRGPGTTMEFAVAL 128
AL + + G K T +P +++ T E+RV++DG ++T+RGPGT+ +FA+A+
Sbjct: 113 -TALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGLILTSRGPGTSFKFALAI 171
Query: 129 VEQLYRKGKADEVSGPL 145
VE L K A +V PL
Sbjct: 172 VEALNGKEVAAQVKAPL 188
>pdb|2AB0|A Chain A, Crystal Structure Of E. Coli Protein Yajl (Thij)
pdb|2AB0|B Chain B, Crystal Structure Of E. Coli Protein Yajl (Thij)
Length = 205
Score = 72.8 bits (177), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 4/146 (2%)
Query: 2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL 61
L + GVK++ADA + + D +D+I LP + A ++S +L VK+ +GR+
Sbjct: 42 NLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRI 101
Query: 62 YAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKV--VTTRGPG 119
AA+CA+PA L + T +P+ +++ PA ++ RV D +V +T++GPG
Sbjct: 102 VAAICAAPATVLVPHDIFPIGNMTGFPTLKDKI-PA-EQWLDKRVVWDARVKLLTSQGPG 159
Query: 120 TTMEFAVALVEQLYRKGKADEVSGPL 145
T ++F + +++ L + KA EV+ L
Sbjct: 160 TAIDFGLKIIDLLVGREKAHEVASQL 185
>pdb|3OT1|A Chain A, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%)
Query: 2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL 61
+L+V GV + A+ + C FD +ALP + A +S L ++ + G+L
Sbjct: 47 KLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKL 106
Query: 62 YAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTT 121
AA+CA+PA+ G + TC+P+F + + + ++T++GPGT
Sbjct: 107 VAAICATPALVFAKQQKFVGARXTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTA 166
Query: 122 MEF 124
+EF
Sbjct: 167 LEF 169
>pdb|3NOR|A Chain A, Crystal Structure Of T102s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 34 VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
+C+P T L E +++QA+ R +VC S ++ LG+ GLL+G +AT + ++
Sbjct: 69 ICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVC-SGSLVLGAAGLLQGKRATTHWAY 127
Query: 91 MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
E LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|3OT1|B Chain B, Crystal Structure Of Vc2308 Protein
Length = 208
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%)
Query: 2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL 61
+L+V GV + A+ + C FD +ALP + A +S L ++ + G+L
Sbjct: 47 KLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFADSTALLALIDAFSQQGKL 106
Query: 62 YAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTT 121
AA+ A+PA+ G + TC+P+F + + + ++T++GPGT
Sbjct: 107 VAAIXATPALVFAKQQKFVGARXTCHPNFFDHIPSERLSRQRVCYYATQHLLTSQGPGTA 166
Query: 122 MEF 124
+EF
Sbjct: 167 LEF 169
>pdb|3NOV|A Chain A, Crystal Structure Of D17e Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 34 VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
+C+P T L E +++QA+ R +VC ++ LG+ GLL+G +AT + ++
Sbjct: 69 ICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTG-SLVLGAAGLLQGKRATTHWAY 127
Query: 91 MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
E LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|3NOO|A Chain A, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOO|B Chain B, Crystal Structure Of C101a Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 34 VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
+C+P T L E +++QA+ R Y A+ ++ LG+ GLL+G +AT + ++
Sbjct: 69 ICIPGGTGVGALMEDPQALAFIRQQAARAR-YVTSVATGSLVLGAAGLLQGKRATTHWAY 127
Query: 91 MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
E LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|3NOQ|A Chain A, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
pdb|3NOQ|B Chain B, Crystal Structure Of C101s Isocyanide Hydratase From
Pseudomonas Fluorescens
Length = 231
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
Query: 34 VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
+C+P T L E +++QA+ R Y ++ ++ LG+ GLL+G +AT + ++
Sbjct: 69 ICIPGGTGVGALMEDPQALAFIRQQAARAR-YVTSVSTGSLVLGAAGLLQGKRATTHWAY 127
Query: 91 MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
E LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|3NON|A Chain A, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
pdb|3NON|B Chain B, Crystal Structure Of Isocyanide Hydratase From Pseudomonas
Fluorescens
Length = 231
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 34 VCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSF 90
+C+P T L E +++QA+ R Y + ++ LG+ GLL+G +AT + ++
Sbjct: 69 ICIPGGTGVGALMEDPQALAFIRQQAARAR-YVTSVXTGSLVLGAAGLLQGKRATTHWAY 127
Query: 91 MEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
E LAP A V RV +DG ++T G ++FA+ L +L+ A V
Sbjct: 128 HELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRV 178
>pdb|1G2I|A Chain A, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|B Chain B, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
pdb|1G2I|C Chain C, Crystal Structure Of A Novel Intracellular Protease From
Pyrococcus Horikoshii At 2 A Resolution
Length = 166
Score = 52.8 bits (125), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 9 HGVKIVADALVSDCRDAVFDLIALPVCM-PDATNLKESKVLETIVKKQASNGRLYAAVCA 67
HG + D FD + LP P+ L E V +I +K S G+ A++C
Sbjct: 44 HGYSVKVDLTFDKVNPEEFDALVLPGGRAPERVRLNEKAV--SIARKXFSEGKPVASICH 101
Query: 68 SPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVA 127
P + + + G+L+G K T YP + A V++ V DG V++R P +
Sbjct: 102 GPQILISA-GVLRGRKGTSYPGIKDDXINAGVEWVDAEVVVDGNWVSSRVPADLYAWXRE 160
Query: 128 LVEQL 132
V+ L
Sbjct: 161 FVKLL 165
>pdb|3L18|A Chain A, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
pdb|3L18|B Chain B, Ton1285, An Intracellular Protease From Thermococcus
Onnurineus Na1
Length = 168
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 4 RVDACHGVKIVADALVSDCRDAVFDLIALPVCM-PDATNLKESKVLETIVKKQASNGRLY 62
++ HG + D + FD + LP P+ L E V+ I ++ + +
Sbjct: 41 KITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLNEKAVM--ITRRMFEDDKPV 98
Query: 63 AAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTM 122
A++C P + + + +LKG + T + + + A A +++ V DG V++R PG
Sbjct: 99 ASICHGPQILISA-KVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGNWVSSRHPGDLY 157
Query: 123 EFAVALVEQLY 133
+ V+ L+
Sbjct: 158 AWMREFVKLLH 168
>pdb|2VRN|A Chain A, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
pdb|2VRN|B Chain B, The Structure Of The Stress Response Protein Dr1199 From
Deinococcus Radiodurans: A Member Of The Dj-1
Superfamily
Length = 190
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 12 KIVADALVSDCRDAVFDLIALP--VCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69
K D +VS+ + + +D + LP PD L+E + V+ G+ AA+ P
Sbjct: 61 KYRVDHVVSEVQVSDYDGLLLPGGTVNPDKLRLEEGAM--KFVRDMYDAGKPIAAIXHGP 118
Query: 70 AVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALV 129
+L G+ +GLK T + S +L A A V+ D VVT+R P F +V
Sbjct: 119 -WSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECVTDKGVVTSRKPDDLPAFNKKIV 177
Query: 130 EQL 132
E+
Sbjct: 178 EEF 180
>pdb|3FSE|A Chain A, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
pdb|3FSE|B Chain B, Crystal Structure Of A Two-Domain Protein Containing
Dj-1THIJPFPI- Like And Ferritin-Like Domains (Ava_4496)
From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution
Length = 365
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 15 ADALVSDCRDAVFDLIALPVCM-PDATNLKESKVLETIVKKQASNGRLYAAVCASPAVAL 73
AD ++ + FD + +P PD + V V++ G+L AAV P V +
Sbjct: 62 ADGTTTEAIASEFDAVVIPGGXAPDKXRRNPNTV--RFVQEAXEQGKLVAAVXHGPQVLI 119
Query: 74 GSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLY 133
LL+G +AT + + + A A ++ + DG ++T+R PG F A++ +L
Sbjct: 120 -EGDLLRGKQATGFIAISKDXXNAGADYLDEALVVDGNLITSREPGDLAIFTTAILSRLG 178
Query: 134 RKGK 137
GK
Sbjct: 179 YGGK 182
>pdb|3EWN|A Chain A, Crystal Structure Of A ThijPFPI FAMILY PROTEIN FROM
PSEUDOMONAS Syringae
Length = 253
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 55 QASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVT 114
+ + + +VC S ++ LG+ GLLKG KAT + S + LA A E+RV +D +T
Sbjct: 113 RGARAKYITSVC-SGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRNRIT 171
Query: 115 TRGPGTTMEFAVALVEQL 132
G ++F ++ V +L
Sbjct: 172 GAGVTAGLDFGLSXVAEL 189
>pdb|4GE0|A Chain A, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|B Chain B, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|C Chain C, Schizosaccharomyces Pombe Dj-1 T114p Mutant
pdb|4GE0|D Chain D, Schizosaccharomyces Pombe Dj-1 T114p Mutant
Length = 194
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 27 FDLIALPVCMPDATNLKESKVLETIVKK-QASNGRLYAAVCASPAVALGSWGLLKGLKAT 85
+D+ +P A L + ++ +VK+ + + A P A S L + T
Sbjct: 74 YDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGPLTAKTSG--LPNKQIT 131
Query: 86 CYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
+PS QL ++ V + ++T++GPGT M F + L+EQ+ K K + V
Sbjct: 132 GHPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|4GDH|A Chain A, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|B Chain B, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|C Chain C, Schizosaccharomyces Pombe Dj-1
pdb|4GDH|D Chain D, Schizosaccharomyces Pombe Dj-1
Length = 194
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 27 FDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATC 86
+D+ +P A L + ++ +VK+ + + + + + GL + T
Sbjct: 74 YDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGTLTAKTSGL-PNKQITG 132
Query: 87 YPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
+PS QL ++ V + ++T++GPGT M F + L+EQ+ K K + V
Sbjct: 133 HPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|4GE3|A Chain A, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|B Chain B, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|C Chain C, Schizosaccharomyces Pombe Dj-1 T114v Mutant
pdb|4GE3|D Chain D, Schizosaccharomyces Pombe Dj-1 T114v Mutant
Length = 194
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 27 FDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATC 86
+D+ +P A L + ++ +VK+ + + + + + GL + T
Sbjct: 74 YDIAIIPGGGLGAKTLSTTPFVQQVVKEFYKKPNKWIGMIXAGVLTAKTSGL-PNKQITG 132
Query: 87 YPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEV 141
+PS QL ++ V + ++T++GPGT M F + L+EQ+ K K + V
Sbjct: 133 HPSVRGQLEEGGYKYLDQPVVLEENLITSQGPGTAMLFGLKLLEQVASKDKYNAV 187
>pdb|3MGK|A Chain A, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
pdb|3MGK|B Chain B, Crystal Structure Of Probable ProteaseAMIDASE FROM
Clostridium Acetobutylicum Atcc 824
Length = 211
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 64 AVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV---ESRVQQDGKVVTTRGPGT 120
+VC A+ L G+L G +AT + + + E+R +DG + T+ G
Sbjct: 102 SVCTGSAL-LSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKDGNIYTSSGVSA 160
Query: 121 TMEFAVALVEQLYRKGKADEVS 142
++ + +E L K KA E+S
Sbjct: 161 GIDMTLGFIEDLIGKEKALEIS 182
>pdb|1G6I|A Chain A, Crystal Structure Of The Yeast Alpha-1,2-Mannosidase With
Bound 1- Deoxymannojirimycin At 1.59 A Resolution
Length = 545
Score = 29.6 bits (65), Expect = 0.63, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 69 PAVALGSWGLLKGLKATCYPSFMEQ---LAPACAATVESRVQQDG 110
P + W L KG+ TCY + + LAP + ++QDG
Sbjct: 364 PFFSKSDWDLAKGITDTCYQMYKQSSSGLAPEIVVFNDGNIKQDG 408
>pdb|1DL2|A Chain A, Crystal Structure Of Class I Alpha-1,2-Mannosidase From
Saccharomyces Cerevisiae At 1.54 Angstrom Resolution
Length = 511
Score = 29.6 bits (65), Expect = 0.63, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 69 PAVALGSWGLLKGLKATCYPSFMEQ---LAPACAATVESRVQQDG 110
P + W L KG+ TCY + + LAP + ++QDG
Sbjct: 330 PFFSKSDWDLAKGITDTCYQMYKQSSSGLAPEIVVFNDGNIKQDG 374
>pdb|1U9C|A Chain A, Crystallographic Structure Of Apc35852
Length = 224
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 27 FDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA 70
FD I LP + +++ L+ ++++ A +GR+ AAV P+
Sbjct: 90 FDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVXHGPS 133
>pdb|4HCJ|A Chain A, Crystal Structure Of ThijPFPI DOMAIN PROTEIN FROM
BRACHYSPIRA Murdochii
Length = 177
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 78 LLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALV 129
+L+ + TC + + A V G +VT GP ++ +FA A+V
Sbjct: 119 ILEEINVTCLSADESHVRHGNANIXSENVVVSGNIVTANGPTSSKDFANAVV 170
>pdb|2YFS|A Chain A, Crystal Structure Of Inulosucrase From Lactobacillus
Johnsonii Ncc533 In Complex With Sucrose
Length = 571
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 80 KGLKATCYPSFMEQLAPACAATVESRVQQDG 110
KG+ AT PSF+ Q+ P TV +++ G
Sbjct: 486 KGMHATWAPSFLLQINPDNTTTVLAKMTNQG 516
>pdb|2YFR|A Chain A, Crystal Structure Of Inulosucrase From Lactobacillus
Johnsonii Ncc533
pdb|2YFT|A Chain A, Crystal Structure Of Inulosucrase From Lactobacillus
Johnsonii Ncc533 In Complex With 1-Kestose
Length = 571
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 80 KGLKATCYPSFMEQLAPACAATVESRVQQDG 110
KG+ AT PSF+ Q+ P TV +++ G
Sbjct: 486 KGMHATWAPSFLLQINPDNTTTVLAKMTNQG 516
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 26.2 bits (56), Expect = 7.7, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 12 KIVADALVSDCRDAVFDL---IALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68
KI +V D DA+ + I + + +K+++ L+ + K +G+L+
Sbjct: 19 KIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGI---- 74
Query: 69 PAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVA 127
+ + + GL+ TC +E P +TV ++ ++ V+ G EFA+
Sbjct: 75 -PMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLHKENAVLI--GKLNMDEFAMG 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,840,593
Number of Sequences: 62578
Number of extensions: 128399
Number of successful extensions: 394
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 48
length of query: 145
length of database: 14,973,337
effective HSP length: 89
effective length of query: 56
effective length of database: 9,403,895
effective search space: 526618120
effective search space used: 526618120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)