Query 045076
Match_columns 145
No_of_seqs 189 out of 1118
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:36:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045076.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045076hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01383 not_thiJ DJ-1 family 100.0 1E-33 2.2E-38 197.9 14.2 138 3-143 40-178 (179)
2 cd03139 GATase1_PfpI_2 Type 1 100.0 1.8E-33 4E-38 197.1 12.9 141 1-145 39-180 (183)
3 cd03138 GATase1_AraC_2 AraC tr 100.0 2E-33 4.4E-38 198.9 12.8 142 1-145 46-192 (195)
4 cd03136 GATase1_AraC_ArgR_like 100.0 2.6E-33 5.7E-38 196.9 13.3 140 1-145 41-182 (185)
5 cd03137 GATase1_AraC_1 AraC tr 100.0 7.8E-33 1.7E-37 194.7 13.3 141 1-145 41-184 (187)
6 KOG2764 Putative transcription 100.0 4.8E-32 1E-36 190.8 12.9 144 2-145 43-186 (247)
7 COG4977 Transcriptional regula 100.0 3.6E-32 7.8E-37 203.6 12.2 140 1-145 53-195 (328)
8 PF01965 DJ-1_PfpI: DJ-1/PfpI 100.0 1E-31 2.2E-36 182.7 12.0 130 2-132 10-146 (147)
9 TIGR01382 PfpI intracellular p 100.0 3.7E-31 8E-36 182.9 12.6 129 2-132 36-165 (166)
10 PRK11574 oxidative-stress-resi 100.0 1E-30 2.2E-35 185.4 14.7 141 3-145 43-185 (196)
11 cd03135 GATase1_DJ-1 Type 1 gl 100.0 8.1E-31 1.8E-35 180.4 13.4 128 2-132 35-163 (163)
12 PF13278 DUF4066: Putative ami 100.0 2E-30 4.2E-35 179.4 13.2 126 1-130 38-166 (166)
13 cd03134 GATase1_PfpI_like A ty 100.0 1.4E-30 3E-35 179.9 11.7 127 2-130 37-164 (165)
14 PRK09393 ftrA transcriptional 100.0 1.9E-29 4.1E-34 191.0 13.5 140 1-145 52-194 (322)
15 cd03140 GATase1_PfpI_3 Type 1 100.0 2.1E-29 4.6E-34 175.0 11.9 128 1-132 35-166 (170)
16 cd03169 GATase1_PfpI_1 Type 1 100.0 1.7E-28 3.6E-33 171.9 12.4 123 8-132 58-180 (180)
17 cd03147 GATase1_Ydr533c_like T 100.0 7.8E-29 1.7E-33 179.4 8.3 124 8-132 76-231 (231)
18 cd03141 GATase1_Hsp31_like Typ 99.9 1.6E-27 3.4E-32 172.0 7.8 123 9-132 73-221 (221)
19 PRK04155 chaperone protein Hch 99.9 3.1E-26 6.7E-31 170.1 11.2 109 24-133 145-282 (287)
20 cd03148 GATase1_EcHsp31_like T 99.9 2.5E-26 5.3E-31 166.5 9.6 123 10-133 74-232 (232)
21 COG0693 ThiJ Putative intracel 99.9 7.4E-25 1.6E-29 154.3 12.8 132 4-136 43-186 (188)
22 cd03133 GATase1_ES1 Type 1 glu 99.9 2.3E-22 5E-27 143.7 9.3 122 4-127 53-201 (213)
23 PRK11780 isoprenoid biosynthes 99.9 8.4E-22 1.8E-26 141.4 9.9 113 5-119 57-193 (217)
24 cd03132 GATase1_catalase Type 99.7 1.6E-16 3.4E-21 107.2 10.1 78 1-79 37-114 (142)
25 PRK11249 katE hydroperoxidase 99.3 8.2E-12 1.8E-16 102.7 8.3 78 2-80 634-711 (752)
26 cd01740 GATase1_FGAR_AT Type 1 99.2 7.1E-11 1.5E-15 86.2 6.8 90 24-116 41-136 (238)
27 PRK03619 phosphoribosylformylg 98.9 2.8E-09 6E-14 76.9 6.7 60 23-83 38-102 (219)
28 COG3155 ElbB Uncharacterized p 98.8 1.8E-08 3.8E-13 68.4 6.7 109 19-134 78-204 (217)
29 TIGR01737 FGAM_synth_I phospho 98.7 6.9E-08 1.5E-12 70.1 7.7 58 24-82 38-100 (227)
30 PRK01175 phosphoribosylformylg 98.6 1.2E-07 2.6E-12 70.1 6.0 57 24-81 46-110 (261)
31 PRK13526 glutamine amidotransf 98.6 5.9E-08 1.3E-12 67.7 3.4 54 25-81 38-97 (179)
32 cd03130 GATase1_CobB Type 1 gl 98.5 3E-07 6.6E-12 65.4 6.4 50 26-76 40-91 (198)
33 TIGR03800 PLP_synth_Pdx2 pyrid 98.4 5.2E-07 1.1E-11 63.5 4.6 51 25-76 35-86 (184)
34 COG0047 PurL Phosphoribosylfor 98.3 1.7E-06 3.6E-11 62.0 5.9 55 26-81 43-102 (231)
35 PRK01077 cobyrinic acid a,c-di 98.2 3.8E-06 8.2E-11 66.8 6.2 51 25-76 286-338 (451)
36 cd01750 GATase1_CobQ Type 1 gl 98.2 3.5E-06 7.6E-11 59.7 5.4 66 8-76 21-88 (194)
37 PRK13525 glutamine amidotransf 98.2 3.3E-06 7.1E-11 59.6 5.0 51 25-76 37-88 (189)
38 PRK13527 glutamine amidotransf 98.1 4.4E-06 9.6E-11 59.4 4.5 51 25-76 42-93 (200)
39 PF07685 GATase_3: CobB/CobQ-l 98.1 5.2E-06 1.1E-10 57.0 4.6 52 24-76 5-58 (158)
40 PRK13143 hisH imidazole glycer 98.1 4.4E-06 9.5E-11 59.5 4.4 51 25-76 37-87 (200)
41 cd01653 GATase1 Type 1 glutami 98.1 1.1E-05 2.4E-10 50.2 5.8 49 24-73 44-92 (115)
42 cd03128 GAT_1 Type 1 glutamine 98.0 1.8E-05 3.9E-10 47.1 5.2 46 24-69 44-89 (92)
43 cd01744 GATase1_CPSase Small c 97.9 2.4E-05 5.2E-10 54.6 5.5 55 18-76 31-85 (178)
44 PRK08250 glutamine amidotransf 97.9 3.3E-05 7.1E-10 56.4 5.7 51 25-76 44-100 (235)
45 PRK13141 hisH imidazole glycer 97.9 1.7E-05 3.6E-10 56.7 3.9 51 25-76 36-88 (205)
46 PF13507 GATase_5: CobB/CobQ-l 97.9 3.2E-05 7E-10 57.2 5.5 58 23-81 43-111 (259)
47 cd01741 GATase1_1 Subgroup of 97.8 3.7E-05 8.1E-10 54.0 5.2 52 24-76 44-97 (188)
48 cd01749 GATase1_PB Glutamine A 97.8 2.6E-05 5.6E-10 54.8 4.4 51 25-76 34-85 (183)
49 cd01748 GATase1_IGP_Synthase T 97.8 4.3E-05 9.4E-10 54.2 4.5 50 25-76 35-87 (198)
50 PLN02832 glutamine amidotransf 97.8 3.6E-05 7.7E-10 56.5 4.1 50 26-76 38-88 (248)
51 PF01174 SNO: SNO glutamine am 97.7 5.7E-05 1.2E-09 52.9 4.2 49 26-75 33-83 (188)
52 PRK07053 glutamine amidotransf 97.7 0.00012 2.5E-09 53.5 5.7 51 25-76 46-99 (234)
53 COG0311 PDX2 Predicted glutami 97.6 5E-05 1.1E-09 52.9 3.2 61 12-75 26-87 (194)
54 PRK13181 hisH imidazole glycer 97.6 9.9E-05 2.2E-09 52.4 4.2 50 25-76 36-88 (199)
55 TIGR00379 cobB cobyrinic acid 97.5 0.00024 5.1E-09 56.6 5.8 50 26-76 286-337 (449)
56 PF00117 GATase: Glutamine ami 97.4 0.00033 7.1E-09 49.2 5.0 49 24-76 40-88 (192)
57 PRK09065 glutamine amidotransf 97.4 0.00031 6.8E-09 51.3 4.8 51 25-76 53-104 (237)
58 PRK05665 amidotransferase; Pro 97.3 0.00041 8.9E-09 50.8 5.0 51 25-76 56-107 (240)
59 PLN02617 imidazole glycerol ph 97.3 0.00043 9.3E-09 56.2 5.5 50 25-76 43-95 (538)
60 PRK12564 carbamoyl phosphate s 97.3 0.00056 1.2E-08 52.9 5.2 55 18-76 210-264 (360)
61 COG0518 GuaA GMP synthase - Gl 97.3 0.0009 1.9E-08 47.7 5.8 59 16-76 35-95 (198)
62 cd01745 GATase1_2 Subgroup of 97.2 0.00074 1.6E-08 47.6 5.2 51 25-76 52-116 (189)
63 PRK13146 hisH imidazole glycer 97.2 0.0005 1.1E-08 49.3 4.3 55 18-76 35-93 (209)
64 PRK00784 cobyric acid synthase 97.2 0.0007 1.5E-08 54.5 5.6 65 9-76 275-341 (488)
65 cd01742 GATase1_GMP_Synthase T 97.2 0.00072 1.6E-08 47.1 4.9 49 23-76 38-86 (181)
66 TIGR00888 guaA_Nterm GMP synth 97.2 0.00057 1.2E-08 48.1 4.1 46 26-76 41-86 (188)
67 TIGR01855 IMP_synth_hisH imida 97.2 0.00055 1.2E-08 48.6 3.9 49 25-76 35-87 (196)
68 PRK13170 hisH imidazole glycer 97.2 0.0005 1.1E-08 48.8 3.7 46 26-76 38-86 (196)
69 PRK07765 para-aminobenzoate sy 97.2 0.0012 2.5E-08 47.6 5.6 48 25-76 45-92 (214)
70 CHL00188 hisH imidazole glycer 97.1 0.00056 1.2E-08 49.1 3.8 57 25-83 38-106 (210)
71 PRK06490 glutamine amidotransf 97.1 0.0011 2.4E-08 48.5 5.3 51 25-76 51-102 (239)
72 PRK14004 hisH imidazole glycer 97.1 0.00086 1.9E-08 48.2 4.5 49 25-76 36-88 (210)
73 PRK13152 hisH imidazole glycer 97.1 0.0012 2.5E-08 47.0 5.0 50 25-76 36-89 (201)
74 TIGR01857 FGAM-synthase phosph 97.1 0.00097 2.1E-08 58.7 5.2 57 24-81 1029-1095(1239)
75 COG1797 CobB Cobyrinic acid a, 97.0 0.0018 3.8E-08 51.0 5.2 66 10-76 271-339 (451)
76 cd03144 GATase1_ScBLP_like Typ 96.9 0.0008 1.7E-08 43.7 2.7 46 25-74 43-90 (114)
77 TIGR00313 cobQ cobyric acid sy 96.9 0.0017 3.8E-08 52.1 4.8 49 26-75 284-334 (475)
78 PRK07567 glutamine amidotransf 96.8 0.002 4.3E-08 47.3 4.5 52 24-76 49-109 (242)
79 KOG3210 Imidazoleglycerol-phos 96.8 0.0012 2.6E-08 45.5 2.9 58 15-75 47-106 (226)
80 COG0118 HisH Glutamine amidotr 96.8 0.0026 5.6E-08 45.1 4.6 69 10-82 25-106 (204)
81 PRK13896 cobyrinic acid a,c-di 96.8 0.0028 6E-08 50.3 5.2 49 26-76 274-324 (433)
82 PRK06895 putative anthranilate 96.8 0.0031 6.8E-08 44.4 4.9 47 25-76 42-88 (190)
83 PRK12838 carbamoyl phosphate s 96.6 0.0031 6.8E-08 48.7 4.4 47 25-76 207-253 (354)
84 PRK00758 GMP synthase subunit 96.6 0.0027 5.8E-08 44.5 3.7 43 26-76 40-83 (184)
85 TIGR00566 trpG_papA glutamine 96.5 0.0036 7.7E-08 44.1 3.9 53 19-76 36-88 (188)
86 cd01746 GATase1_CTP_Synthase T 96.5 0.0069 1.5E-07 44.3 5.4 43 25-71 54-96 (235)
87 TIGR01368 CPSaseIIsmall carbam 96.5 0.0037 8E-08 48.4 4.2 46 26-76 214-259 (358)
88 PLN03206 phosphoribosylformylg 96.5 0.0052 1.1E-07 54.6 5.4 58 24-82 1080-1148(1307)
89 TIGR01735 FGAM_synt phosphorib 96.5 0.0074 1.6E-07 53.8 6.2 59 23-82 1097-1167(1310)
90 PRK13142 hisH imidazole glycer 96.5 0.0029 6.2E-08 44.9 3.0 47 26-76 37-86 (192)
91 PRK08007 para-aminobenzoate sy 96.4 0.0044 9.6E-08 43.6 3.9 52 20-76 37-88 (187)
92 PRK05637 anthranilate synthase 96.3 0.0074 1.6E-07 43.3 4.3 53 19-76 37-89 (208)
93 CHL00197 carA carbamoyl-phosph 96.2 0.0092 2E-07 46.6 4.8 53 20-76 227-279 (382)
94 PRK11366 puuD gamma-glutamyl-g 96.2 0.01 2.2E-07 43.8 4.8 51 25-76 60-123 (254)
95 PRK05297 phosphoribosylformylg 96.2 0.015 3.2E-07 52.0 6.4 57 24-81 1078-1146(1290)
96 cd03146 GAT1_Peptidase_E Type 96.2 0.0056 1.2E-07 44.0 3.2 48 25-75 79-129 (212)
97 PRK06774 para-aminobenzoate sy 96.1 0.0093 2E-07 42.0 4.3 53 19-76 36-88 (191)
98 PRK05670 anthranilate synthase 96.1 0.011 2.5E-07 41.5 4.7 46 26-76 43-88 (189)
99 CHL00101 trpG anthranilate syn 96.1 0.0085 1.8E-07 42.3 3.8 47 25-76 42-88 (190)
100 PRK06186 hypothetical protein; 96.1 0.012 2.6E-07 42.8 4.5 43 24-70 51-93 (229)
101 PLN02347 GMP synthetase 96.0 0.013 2.9E-07 47.8 5.1 58 17-76 44-102 (536)
102 PF09825 BPL_N: Biotin-protein 96.0 0.017 3.7E-07 44.9 5.2 48 25-75 48-96 (367)
103 PRK07649 para-aminobenzoate/an 95.9 0.013 2.8E-07 41.6 4.2 47 25-76 42-88 (195)
104 cd01743 GATase1_Anthranilate_S 95.9 0.019 4.2E-07 40.1 5.0 47 25-76 41-87 (184)
105 PHA03366 FGAM-synthase; Provis 95.9 0.019 4.1E-07 51.3 5.7 56 24-80 1070-1137(1304)
106 PRK05282 (alpha)-aspartyl dipe 95.8 0.013 2.9E-07 42.8 4.0 48 25-75 78-128 (233)
107 PRK06278 cobyrinic acid a,c-di 95.8 0.016 3.4E-07 46.6 4.4 47 25-76 35-81 (476)
108 PRK08857 para-aminobenzoate sy 95.6 0.022 4.8E-07 40.2 4.3 46 26-76 43-88 (193)
109 PRK13566 anthranilate synthase 95.6 0.03 6.4E-07 47.3 5.5 47 25-76 568-614 (720)
110 TIGR01739 tegu_FGAM_synt herpe 95.5 0.042 9.2E-07 48.9 6.4 56 24-80 971-1038(1202)
111 PLN02771 carbamoyl-phosphate s 95.5 0.026 5.5E-07 44.6 4.6 53 19-76 274-326 (415)
112 PRK05380 pyrG CTP synthetase; 95.5 0.032 6.9E-07 45.3 5.2 43 25-71 342-384 (533)
113 TIGR01815 TrpE-clade3 anthrani 95.1 0.044 9.6E-07 46.3 5.2 47 25-76 558-604 (717)
114 cd01747 GATase1_Glutamyl_Hydro 95.1 0.051 1.1E-06 40.6 5.0 50 25-75 53-107 (273)
115 COG3442 Predicted glutamine am 94.7 0.062 1.3E-06 38.8 4.3 51 23-75 49-102 (250)
116 COG0505 CarA Carbamoylphosphat 94.7 0.042 9.1E-07 42.3 3.6 59 14-76 208-266 (368)
117 PLN02335 anthranilate synthase 94.6 0.057 1.2E-06 39.1 4.1 47 25-76 61-107 (222)
118 PRK05368 homoserine O-succinyl 94.5 0.11 2.3E-06 39.5 5.5 56 18-74 91-149 (302)
119 cd03131 GATase1_HTS Type 1 glu 94.4 0.032 7E-07 39.0 2.3 55 18-74 54-113 (175)
120 TIGR00337 PyrG CTP synthase. C 94.1 0.1 2.2E-06 42.4 4.8 43 25-71 342-384 (525)
121 PLN02327 CTP synthase 94.0 0.11 2.4E-06 42.4 4.9 44 24-71 360-403 (557)
122 PF03575 Peptidase_S51: Peptid 93.8 0.054 1.2E-06 36.8 2.4 48 26-76 35-85 (154)
123 PRK00074 guaA GMP synthase; Re 93.6 0.093 2E-06 42.7 3.9 46 26-76 46-91 (511)
124 COG2071 Predicted glutamine am 93.5 0.21 4.6E-06 36.5 5.1 48 25-74 59-121 (243)
125 PF07722 Peptidase_C26: Peptid 93.3 0.094 2E-06 37.8 3.1 48 25-72 57-119 (217)
126 PRK14607 bifunctional glutamin 93.2 0.095 2.1E-06 42.8 3.4 53 19-76 37-89 (534)
127 cd03129 GAT1_Peptidase_E_like 92.7 0.17 3.6E-06 36.2 3.7 49 25-76 79-130 (210)
128 TIGR01823 PabB-fungal aminodeo 92.3 0.24 5.3E-06 42.1 4.6 47 25-76 52-102 (742)
129 PRK09522 bifunctional glutamin 92.2 0.2 4.4E-06 41.0 4.0 46 26-76 48-93 (531)
130 KOG0370 Multifunctional pyrimi 91.9 0.56 1.2E-05 40.9 6.2 48 25-76 209-256 (1435)
131 COG0504 PyrG CTP synthase (UTP 91.4 0.48 1E-05 38.2 5.1 40 27-70 344-383 (533)
132 COG0512 PabA Anthranilate/para 91.2 0.63 1.4E-05 32.9 5.0 57 23-84 42-107 (191)
133 cd03145 GAT1_cyanophycinase Ty 91.2 0.39 8.4E-06 34.6 4.1 48 25-75 82-132 (217)
134 KOG3179 Predicted glutamine sy 90.3 0.64 1.4E-05 33.4 4.4 50 24-76 57-109 (245)
135 KOG0623 Glutamine amidotransfe 88.3 1.2 2.6E-05 34.5 4.9 62 10-74 25-89 (541)
136 PF12682 Flavodoxin_4: Flavodo 88.2 0.29 6.3E-06 33.5 1.5 42 23-67 70-111 (156)
137 COG1492 CobQ Cobyric acid synt 87.8 1.4 3E-05 35.6 5.2 49 26-75 290-340 (486)
138 TIGR02069 cyanophycinase cyano 87.6 0.85 1.8E-05 33.7 3.7 48 25-75 81-131 (250)
139 COG4090 Uncharacterized protei 87.3 2.8 6.2E-05 27.9 5.5 63 7-78 71-133 (154)
140 PF09897 DUF2124: Uncharacteri 86.4 0.29 6.2E-06 33.1 0.6 51 26-80 80-130 (147)
141 COG4635 HemG Flavodoxin [Energ 84.9 1.6 3.5E-05 30.1 3.7 47 19-68 40-88 (175)
142 PLN02889 oxo-acid-lyase/anthra 84.6 1.9 4.1E-05 37.7 4.8 48 26-76 131-178 (918)
143 COG4285 Uncharacterized conser 83.1 2.7 5.9E-05 30.5 4.3 45 26-71 49-94 (253)
144 PRK06934 flavodoxin; Provision 82.9 1.6 3.4E-05 31.8 3.1 42 24-68 127-168 (221)
145 PF01058 Oxidored_q6: NADH ubi 82.0 1.9 4.1E-05 28.5 3.1 38 25-67 44-81 (131)
146 COG3340 PepE Peptidase E [Amin 81.9 1.7 3.6E-05 31.4 2.9 45 26-74 84-131 (224)
147 PF01799 Fer2_2: [2Fe-2S] bind 81.5 0.35 7.6E-06 29.0 -0.5 41 42-83 5-45 (75)
148 KOG2387 CTP synthase (UTP-ammo 80.5 3.6 7.9E-05 33.1 4.6 41 26-70 363-403 (585)
149 cd03143 A4_beta-galactosidase_ 78.5 6.4 0.00014 26.4 4.9 40 22-67 49-88 (154)
150 PRK06242 flavodoxin; Provision 78.4 3.6 7.8E-05 27.3 3.6 43 25-70 42-85 (150)
151 PRK14817 NADH dehydrogenase su 77.2 5.5 0.00012 28.0 4.2 40 23-67 72-111 (181)
152 PF12724 Flavodoxin_5: Flavodo 76.6 4.8 0.0001 26.8 3.8 43 23-68 40-84 (143)
153 TIGR01754 flav_RNR ribonucleot 74.6 12 0.00026 24.7 5.3 43 24-68 48-90 (140)
154 PRK06411 NADH dehydrogenase su 74.0 7.3 0.00016 27.5 4.2 40 23-67 71-110 (183)
155 PF12641 Flavodoxin_3: Flavodo 72.5 7 0.00015 26.8 3.8 41 24-69 37-77 (160)
156 TIGR01957 nuoB_fam NADH-quinon 69.9 9.3 0.0002 25.9 3.9 40 23-67 54-93 (145)
157 PRK14820 NADH dehydrogenase su 69.3 11 0.00024 26.5 4.2 40 23-67 70-109 (180)
158 KOG1224 Para-aminobenzoate (PA 69.1 7.1 0.00015 32.3 3.6 52 26-85 64-117 (767)
159 PF04204 HTS: Homoserine O-suc 65.8 10 0.00023 28.8 3.8 52 18-71 90-146 (298)
160 PRK14815 NADH dehydrogenase su 65.0 15 0.00033 25.8 4.3 40 23-67 70-109 (183)
161 TIGR03294 FrhG coenzyme F420 h 64.8 16 0.00034 26.6 4.5 38 25-67 49-86 (228)
162 PF08532 Glyco_hydro_42M: Beta 64.5 13 0.00027 26.5 3.9 39 23-67 54-93 (207)
163 PRK14814 NADH dehydrogenase su 63.2 16 0.00036 25.8 4.2 40 23-67 70-109 (186)
164 PRK11104 hemG protoporphyrinog 61.1 25 0.00053 24.4 4.8 42 24-68 44-87 (177)
165 COG1941 FrhG Coenzyme F420-red 61.0 22 0.00048 26.2 4.6 35 26-67 51-85 (247)
166 PRK04761 ppnK inorganic polyph 60.2 21 0.00045 26.4 4.4 39 22-69 21-59 (246)
167 PF04309 G3P_antiterm: Glycero 59.4 59 0.0013 22.8 7.5 97 18-132 11-116 (175)
168 PRK14816 NADH dehydrogenase su 58.6 25 0.00054 24.8 4.4 39 24-67 79-117 (182)
169 TIGR01001 metA homoserine O-su 58.2 10 0.00022 28.8 2.6 51 18-70 91-146 (300)
170 PF06283 ThuA: Trehalose utili 57.5 57 0.0012 23.1 6.4 56 8-67 31-89 (217)
171 COG1058 CinA Predicted nucleot 56.6 18 0.00039 26.9 3.6 33 25-57 59-105 (255)
172 cd05014 SIS_Kpsf KpsF-like pro 56.1 40 0.00086 21.4 4.9 37 26-68 47-83 (128)
173 PRK07116 flavodoxin; Provision 55.5 16 0.00034 24.8 3.0 40 25-67 75-114 (160)
174 PF10034 Dpy19: Q-cell neurobl 52.1 7.6 0.00016 32.8 1.2 49 44-96 504-553 (642)
175 PRK06703 flavodoxin; Provision 51.2 40 0.00087 22.3 4.5 43 25-69 47-92 (151)
176 PRK14819 NADH dehydrogenase su 49.4 40 0.00088 25.1 4.4 39 24-67 69-107 (264)
177 COG2379 GckA Putative glycerat 49.0 20 0.00044 28.4 3.0 62 9-74 65-128 (422)
178 COG1182 AcpD Acyl carrier prot 47.5 51 0.0011 23.7 4.6 51 26-85 87-137 (202)
179 COG4242 CphB Cyanophycinase an 47.3 30 0.00065 25.9 3.4 49 25-75 105-155 (293)
180 PHA02097 hypothetical protein 47.0 22 0.00047 19.6 2.1 26 7-35 18-43 (59)
181 CHL00023 ndhK NADH dehydrogena 46.7 50 0.0011 24.1 4.5 39 24-67 69-107 (225)
182 PRK09461 ansA cytoplasmic aspa 46.0 66 0.0014 24.8 5.4 38 26-65 233-270 (335)
183 PRK05568 flavodoxin; Provision 42.3 55 0.0012 21.3 4.0 44 25-69 47-92 (142)
184 TIGR03193 4hydroxCoAred 4-hydr 41.8 14 0.0003 25.1 1.0 64 47-125 81-144 (148)
185 PF12847 Methyltransf_18: Meth 41.4 82 0.0018 19.2 4.6 11 24-34 68-78 (112)
186 PRK09271 flavodoxin; Provision 41.2 85 0.0018 21.2 4.9 42 25-68 50-94 (160)
187 PRK00561 ppnK inorganic polyph 40.1 58 0.0013 24.3 4.1 35 25-68 32-66 (259)
188 KOG3855 Monooxygenase involved 39.7 20 0.00044 28.8 1.7 30 7-36 17-46 (481)
189 TIGR02922 conserved hypothetic 38.7 24 0.00052 20.3 1.5 16 54-69 39-54 (67)
190 TIGR03198 pucE xanthine dehydr 38.7 19 0.00042 24.5 1.3 66 48-128 83-148 (151)
191 COG4126 Hydantoin racemase [Am 38.6 91 0.002 22.9 4.7 47 24-85 67-113 (230)
192 cd05008 SIS_GlmS_GlmD_1 SIS (S 38.1 1E+02 0.0022 19.4 4.9 37 26-68 46-82 (126)
193 PRK14818 NADH dehydrogenase su 37.6 86 0.0019 21.9 4.4 39 24-67 68-106 (173)
194 PRK03673 hypothetical protein; 37.6 50 0.0011 26.3 3.6 34 25-58 59-106 (396)
195 PRK14813 NADH dehydrogenase su 37.4 75 0.0016 22.6 4.1 39 24-67 65-103 (189)
196 TIGR03313 Se_sel_red_Mo probab 37.1 26 0.00057 31.1 2.2 74 46-134 77-150 (951)
197 TIGR02336 1,3-beta-galactosyl- 36.9 48 0.001 28.3 3.5 62 6-67 475-544 (719)
198 TIGR01755 flav_wrbA NAD(P)H:qu 36.9 28 0.0006 24.6 2.0 42 25-69 67-115 (197)
199 cd04795 SIS SIS domain. SIS (S 36.0 89 0.0019 18.0 4.5 35 26-66 47-81 (87)
200 COG3233 Predicted deacetylase 35.5 65 0.0014 23.6 3.6 35 29-64 38-72 (233)
201 KOG1907 Phosphoribosylformylgl 35.3 56 0.0012 29.1 3.7 58 22-80 1099-1167(1320)
202 PRK09800 putative hypoxanthine 35.1 26 0.00057 31.1 1.9 72 46-132 81-152 (956)
203 COG2242 CobL Precorrin-6B meth 34.9 86 0.0019 22.3 4.1 32 26-64 102-134 (187)
204 TIGR00441 gmhA phosphoheptose 34.3 1.4E+02 0.003 19.9 5.1 36 26-67 79-114 (154)
205 PF11760 CbiG_N: Cobalamin syn 34.1 35 0.00075 20.9 1.8 70 49-136 2-77 (84)
206 TIGR00685 T6PP trehalose-phosp 33.9 64 0.0014 23.4 3.5 42 26-68 9-50 (244)
207 KOG1622 GMP synthase [Nucleoti 33.9 36 0.00079 27.7 2.3 55 16-75 49-103 (552)
208 PF13580 SIS_2: SIS domain; PD 33.6 1.1E+02 0.0023 20.1 4.3 22 44-65 115-136 (138)
209 TIGR00391 hydA hydrogenase (Ni 33.2 1.1E+02 0.0024 24.2 4.8 42 26-67 113-158 (365)
210 cd00885 cinA Competence-damage 32.6 82 0.0018 21.7 3.7 34 25-58 57-104 (170)
211 PF05430 Methyltransf_30: S-ad 32.5 65 0.0014 21.1 3.0 46 25-70 49-94 (124)
212 COG1105 FruK Fructose-1-phosph 32.5 1.4E+02 0.0031 22.9 5.2 43 25-70 128-170 (310)
213 COG4999 Uncharacterized domain 32.2 1.2E+02 0.0025 20.2 4.0 63 7-75 32-97 (140)
214 PF09558 DUF2375: Protein of u 32.1 33 0.00072 20.0 1.4 20 54-73 41-60 (71)
215 PRK12359 flavodoxin FldB; Prov 32.1 1.4E+02 0.003 20.7 4.8 44 25-70 44-90 (172)
216 cd00587 HCP_like The HCP famil 32.0 1.2E+02 0.0026 22.7 4.6 50 28-81 96-145 (258)
217 cd05710 SIS_1 A subgroup of th 31.6 1.4E+02 0.003 18.9 4.6 36 26-67 47-82 (120)
218 PF13649 Methyltransf_25: Meth 31.5 63 0.0014 19.6 2.8 31 25-58 66-96 (101)
219 PF07090 DUF1355: Protein of u 31.2 1.3E+02 0.0029 21.0 4.6 42 24-67 65-109 (177)
220 PF07911 DUF1677: Protein of u 31.1 32 0.00068 21.4 1.3 23 45-68 17-39 (91)
221 PTZ00393 protein tyrosine phos 30.9 47 0.001 24.6 2.3 39 29-69 142-180 (241)
222 PRK03670 competence damage-ind 30.4 85 0.0018 23.3 3.7 33 26-58 60-106 (252)
223 TIGR01753 flav_short flavodoxi 30.0 69 0.0015 20.5 2.9 45 25-70 44-91 (140)
224 PRK10468 hydrogenase 2 small s 29.0 1.3E+02 0.0027 23.9 4.5 42 26-67 111-156 (371)
225 TIGR03127 RuMP_HxlB 6-phospho 28.6 1.9E+02 0.0042 19.6 6.3 37 25-67 71-107 (179)
226 TIGR00288 conserved hypothetic 28.4 1.6E+02 0.0035 20.3 4.5 34 25-67 104-137 (160)
227 COG2350 Uncharacterized protei 27.6 77 0.0017 19.7 2.6 31 43-78 19-49 (92)
228 PRK11921 metallo-beta-lactamas 27.4 1.4E+02 0.0031 23.4 4.7 69 26-109 300-371 (394)
229 cd05006 SIS_GmhA Phosphoheptos 27.4 1.7E+02 0.0037 19.9 4.7 36 26-67 101-136 (177)
230 PF01380 SIS: SIS domain SIS d 27.2 1.6E+02 0.0035 18.4 4.3 36 26-67 53-88 (131)
231 PRK11433 aldehyde oxidoreducta 27.2 33 0.00073 24.9 1.1 72 46-128 130-212 (217)
232 PF00473 CRF: Corticotropin-re 27.1 66 0.0014 16.6 1.9 25 118-142 2-26 (39)
233 PRK00549 competence damage-ind 27.0 98 0.0021 24.7 3.7 34 25-58 58-105 (414)
234 PF14842 FliG_N: FliG N-termin 27.0 85 0.0019 19.8 2.8 27 118-144 71-97 (108)
235 COG5298 Uncharacterized protei 27.0 3.1E+02 0.0067 22.3 6.3 60 12-78 61-120 (530)
236 PF04230 PS_pyruv_trans: Polys 27.0 1.5E+02 0.0032 20.9 4.5 20 49-68 89-108 (286)
237 PRK00414 gmhA phosphoheptose i 26.9 1.7E+02 0.0037 20.5 4.6 36 26-67 111-146 (192)
238 COG1740 HyaA Ni,Fe-hydrogenase 26.3 1.4E+02 0.0031 23.3 4.3 41 27-67 112-156 (355)
239 PRK03767 NAD(P)H:quinone oxido 26.0 93 0.002 21.8 3.2 42 25-69 68-116 (200)
240 PF13660 DUF4147: Domain of un 25.9 37 0.00081 25.0 1.1 62 9-74 69-132 (238)
241 PRK03708 ppnK inorganic polyph 25.8 1.3E+02 0.0029 22.5 4.1 34 25-68 56-89 (277)
242 PRK01911 ppnK inorganic polyph 25.7 1.3E+02 0.0028 22.8 4.0 40 26-74 64-103 (292)
243 PRK14077 pnk inorganic polypho 25.5 1E+02 0.0022 23.4 3.4 40 26-74 64-103 (287)
244 PRK02231 ppnK inorganic polyph 25.3 1.3E+02 0.0029 22.5 4.0 34 26-68 42-75 (272)
245 PRK05788 cobalamin biosynthesi 25.0 3.2E+02 0.007 21.0 6.8 38 45-82 38-75 (315)
246 cd06167 LabA_like LabA_like pr 24.9 1.6E+02 0.0034 19.2 4.0 33 26-67 99-131 (149)
247 PRK05569 flavodoxin; Provision 24.8 71 0.0015 20.7 2.3 43 25-69 47-93 (141)
248 PRK13937 phosphoheptose isomer 24.8 2E+02 0.0044 19.9 4.7 36 26-67 106-141 (188)
249 PF01513 NAD_kinase: ATP-NAD k 24.7 82 0.0018 23.6 2.8 36 24-68 74-109 (285)
250 PRK02645 ppnK inorganic polyph 24.4 1.4E+02 0.0029 22.8 3.9 34 25-67 56-89 (305)
251 PRK03378 ppnK inorganic polyph 24.2 1.6E+02 0.0034 22.3 4.3 35 26-69 63-97 (292)
252 COG0445 GidA Flavin-dependent 24.2 42 0.00092 28.1 1.2 16 26-41 4-19 (621)
253 PRK13938 phosphoheptose isomer 24.1 2.3E+02 0.005 20.0 4.8 37 25-67 112-148 (196)
254 PRK09908 xanthine dehydrogenas 23.8 42 0.00091 23.1 1.0 67 46-125 86-152 (159)
255 PRK03372 ppnK inorganic polyph 23.8 1.5E+02 0.0032 22.7 4.0 35 26-69 72-106 (306)
256 PLN02929 NADH kinase 23.3 2.5E+02 0.0054 21.5 5.1 34 25-68 63-96 (301)
257 PRK02155 ppnK NAD(+)/NADH kina 23.3 1.5E+02 0.0033 22.4 4.0 35 26-69 63-97 (291)
258 PRK02649 ppnK inorganic polyph 23.2 1.5E+02 0.0033 22.6 4.0 40 26-74 68-107 (305)
259 PLN02522 ATP citrate (pro-S)-l 22.9 1E+02 0.0022 26.1 3.2 93 26-136 222-321 (608)
260 TIGR01118 lacA galactose-6-pho 22.9 83 0.0018 21.2 2.3 67 58-136 58-125 (141)
261 PF00265 TK: Thymidine kinase; 22.6 2.7E+02 0.0059 19.3 6.9 55 4-64 47-108 (176)
262 TIGR00689 rpiB_lacA_lacB sugar 22.5 1.5E+02 0.0033 20.0 3.5 67 59-137 59-126 (144)
263 PRK10670 hypothetical protein; 22.5 98 0.0021 21.0 2.6 42 7-53 108-149 (159)
264 PRK04885 ppnK inorganic polyph 22.5 1.9E+02 0.0041 21.6 4.3 41 25-74 34-76 (265)
265 cd05017 SIS_PGI_PMI_1 The memb 22.3 2.1E+02 0.0046 18.0 4.9 37 26-68 43-79 (119)
266 cd02767 MopB_ydeP The MopB_yde 22.3 1.4E+02 0.003 25.0 3.9 44 18-67 157-200 (574)
267 TIGR00200 cinA_nterm competenc 22.1 1.3E+02 0.0029 24.0 3.6 33 25-57 58-104 (413)
268 PF09822 ABC_transp_aux: ABC-t 22.0 3.3E+02 0.0071 20.0 5.9 72 20-101 192-264 (271)
269 PF02601 Exonuc_VII_L: Exonucl 21.7 1.1E+02 0.0025 23.1 3.1 63 26-92 75-139 (319)
270 PRK08621 galactose-6-phosphate 21.7 86 0.0019 21.2 2.2 67 58-136 58-125 (142)
271 TIGR01120 rpiB ribose 5-phosph 21.5 1.6E+02 0.0035 19.9 3.4 67 59-137 60-127 (143)
272 COG1054 Predicted sulfurtransf 21.4 1.1E+02 0.0024 23.5 2.9 25 46-70 157-183 (308)
273 COG0061 nadF NAD kinase [Coenz 21.4 2E+02 0.0043 21.6 4.3 36 24-68 53-88 (281)
274 COG0279 GmhA Phosphoheptose is 21.3 95 0.0021 21.7 2.3 27 108-135 40-66 (176)
275 PRK09939 putative oxidoreducta 21.2 1.2E+02 0.0026 26.3 3.4 44 18-67 202-245 (759)
276 PRK00945 acetyl-CoA decarbonyl 21.2 1.3E+02 0.0028 21.0 3.0 36 25-67 107-142 (171)
277 PLN00093 geranylgeranyl diphos 20.9 82 0.0018 25.3 2.3 17 22-38 35-51 (450)
278 PTZ00366 Surface antigen (SAG 20.8 22 0.00047 28.2 -1.0 20 53-72 12-31 (392)
279 PF04024 PspC: PspC domain; I 20.5 58 0.0013 18.5 1.0 12 57-68 8-19 (61)
280 PRK15482 transcriptional regul 20.4 2.5E+02 0.0054 20.8 4.7 37 26-68 182-218 (285)
281 PRK05571 ribose-5-phosphate is 20.4 1.7E+02 0.0037 19.9 3.4 66 59-136 62-128 (148)
282 TIGR00315 cdhB CO dehydrogenas 20.3 1.8E+02 0.004 20.0 3.6 36 25-67 99-134 (162)
283 PRK10333 5-formyltetrahydrofol 20.1 83 0.0018 21.9 1.9 44 24-67 107-153 (182)
284 PF03698 UPF0180: Uncharacteri 20.1 1.4E+02 0.003 18.0 2.6 27 8-36 19-45 (80)
285 PRK13936 phosphoheptose isomer 20.1 2.9E+02 0.0062 19.4 4.7 36 26-67 111-146 (197)
286 COG2453 CDC14 Predicted protei 20.0 1.9E+02 0.0042 19.9 3.8 27 43-69 89-115 (180)
No 1
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=100.00 E-value=1e-33 Score=197.88 Aligned_cols=138 Identities=51% Similarity=0.741 Sum_probs=124.2
Q ss_pred CeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076 3 LRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL 82 (145)
Q Consensus 3 ~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~ 82 (145)
++|++++|+++.+|..+++.+.++||+||||||......+..++.+.+||+++++++++|+++|+| +++|+++|+|+|+
T Consensus 40 ~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G-~~~La~aGlL~g~ 118 (179)
T TIGR01383 40 LPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAA-PAVLLAAGVLLGK 118 (179)
T ss_pred cceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChh-HHHHHhcCCCCCC
Confidence 389999999999999999876678999999999533455567899999999999999999999996 5789999999999
Q ss_pred eeecCcchhhhhcccCcee-ccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhC
Q 045076 83 KATCYPSFMEQLAPACAAT-VESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSG 143 (145)
Q Consensus 83 ~~t~~~~~~~~l~~~~~~~-~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~ 143 (145)
++|+||.+.+.+.+. .+ .++.++.|||++||+|+.++++|++++|+++.|+++|+++++
T Consensus 119 ~~T~~~~~~~~~~~~--~~~~~~~~v~dg~i~T~~g~~a~~d~~l~li~~~~g~~~a~~va~ 178 (179)
T TIGR01383 119 KATCYPGFKEKLLNG--NYSVNEAVVVDGNIITSRGPGTAIEFALALVELLCGKEKAQEVAA 178 (179)
T ss_pred cEEECccHHHhccCC--ceeCCCCEEEeCCEEECCChhhHHHHHHHHHHHhcCHHHHHHhhc
Confidence 999999999888653 45 478899999999999999999999999999999999999986
No 2
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=1.8e-33 Score=197.12 Aligned_cols=141 Identities=24% Similarity=0.348 Sum_probs=127.9
Q ss_pred CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
++++|++++|+.+.+|..+++.+ +||+|+||||. ....+..++.+++||+++++++++|+++|+|+ ++|+++|+|+
T Consensus 39 ~~~~v~~~~g~~i~~d~~~~~~~--~~D~lvipgg~-~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~-~~La~agll~ 114 (183)
T cd03139 39 TGGPVSSRSGLTVLPDTSFADPP--DLDVLLVPGGG-GTRALVNDPALLDFIRRQAARAKYVTSVCTGA-LLLAAAGLLD 114 (183)
T ss_pred CCCceEeCCCCEEcCCcccccCC--CCCEEEECCCc-chhhhccCHHHHHHHHHhcccCCEEEEEchHH-HHHHhcCCcC
Confidence 36789999999999999998754 89999999994 55556789999999999999999999999975 6899999999
Q ss_pred CceeecCcchhhhhcccCcee-ccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076 81 GLKATCYPSFMEQLAPACAAT-VESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145 (145)
Q Consensus 81 g~~~t~~~~~~~~l~~~~~~~-~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~ 145 (145)
|+++|+||...+.+++.+..+ ++++++.|||++||+|+.++.+|++++|++++|+++++++++.|
T Consensus 115 g~~~t~~~~~~~~~~~~~~~~~~~~~~v~dg~i~T~~g~~a~~~~~l~ii~~~~g~~~a~~~a~~~ 180 (183)
T cd03139 115 GRRATTHWAAIDWLKEFGAIVVVDARWVVDGNIWTSGGVSAGIDMALALVARLFGEELAQAVALLI 180 (183)
T ss_pred CCeeeecHhHHHHHHHhCCCCCCCCEEEecCCEEEcCcHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 999999999999998775445 78889999999999999999999999999999999999999765
No 3
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=2e-33 Score=198.88 Aligned_cols=142 Identities=27% Similarity=0.280 Sum_probs=125.2
Q ss_pred CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChh--ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccc
Q 045076 1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDAT--NLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGL 78 (145)
Q Consensus 1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~--~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agl 78 (145)
++++|++++|+++.+|..+++.+ +||+||||||..... .+..++.+++||+++++++++|+++|+|+ ++|+++|+
T Consensus 46 ~~~~v~s~~g~~i~~d~~~~~~~--~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~-~~La~agl 122 (195)
T cd03138 46 DGGPVLLAGGILILPDATLADVP--APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGV-FLLAEAGL 122 (195)
T ss_pred CCCeeecCCCceecccccccccC--CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHH-HHHHHccC
Confidence 46789999999999999887654 899999999854333 46789999999999999999999999974 68999999
Q ss_pred cCCceeecCcchhhhhccc--Cceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076 79 LKGLKATCYPSFMEQLAPA--CAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145 (145)
Q Consensus 79 l~g~~~t~~~~~~~~l~~~--~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~ 145 (145)
|+|+++|+||...+.+++. +..+.+ +.++.|||++||+|+.+++++++++|++++|+++|+++++.|
T Consensus 123 l~g~~~t~~~~~~~~~~~~~p~~~~~~~~~~v~dg~~~T~~g~~~~~d~al~li~~~~G~~~a~~va~~l 192 (195)
T cd03138 123 LDGRRATTHWWLAPQFRRRFPKVRLDPDRVVVTDGNLITAGGAMAWADLALHLIERLAGPELAQLVARFL 192 (195)
T ss_pred cCCCeeeehHhhHHHHHHHCCCceeccCcEEEeCCCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 9999999999999988775 233443 789999999999999999999999999999999999999764
No 4
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=100.00 E-value=2.6e-33 Score=196.88 Aligned_cols=140 Identities=20% Similarity=0.267 Sum_probs=125.6
Q ss_pred CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
++++|++++|+++.+|..+.+.+ +||+||||||. ... +..++.+++||+++++++++|+++|+| +++|+++|+|+
T Consensus 41 ~~~~v~~~~g~~i~~d~~~~~~~--~~D~liipgg~-~~~-~~~~~~~~~~l~~~~~~~~~i~aic~g-~~~La~aGll~ 115 (185)
T cd03136 41 DGAPVTSSNGLRVAPDAALEDAP--PLDYLFVVGGL-GAR-RAVTPALLAWLRRAARRGVALGGIDTG-AFLLARAGLLD 115 (185)
T ss_pred CCCeeecCCCcEEeCCccccccC--CCCEEEEeCCC-Ccc-ccCCHHHHHHHHHHHhcCCEEEEEcHH-HHHHHHccccC
Confidence 46889999999999999887654 89999999995 343 678999999999999999999999996 56899999999
Q ss_pred CceeecCcchhhhhccc--CceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076 81 GLKATCYPSFMEQLAPA--CAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145 (145)
Q Consensus 81 g~~~t~~~~~~~~l~~~--~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~ 145 (145)
|+++|+||.+.+.+++. +..+.++.++.|||++|++|+.+++++++++|++++|+++|+++++.|
T Consensus 116 g~~~t~~~~~~~~~~~~~p~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~ii~~~~g~~~a~~va~~~ 182 (185)
T cd03136 116 GRRATVHWEHLEAFAEAFPRVQVTRDLFEIDGDRLTCAGGTAALDLMLELIARDHGAALAARVAEQF 182 (185)
T ss_pred CCeeEECcccHHHHHHHCCCCccccCeEEEcCCEEEeccHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999765 345667889999999999999999999999999999999999998764
No 5
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=100.00 E-value=7.8e-33 Score=194.68 Aligned_cols=141 Identities=26% Similarity=0.314 Sum_probs=124.6
Q ss_pred CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
++++|++++|+++.+|..+++.+ +||+||||||. .......++.+++||+++++++++|+++|+| .++|+++|+|+
T Consensus 41 ~~~~v~~~~g~~v~~d~~~~~~~--~~D~liipGg~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~ 116 (187)
T cd03137 41 EGGPVRSSSGLSLVADAGLDALA--AADTVIVPGGP-DVDGRPPPPALLAALRRAAARGARVASVCTG-AFVLAEAGLLD 116 (187)
T ss_pred CCCceeecCCcEEEcCcCccccC--CCCEEEECCCc-ccccccCCHHHHHHHHHHHhcCCEEEEECHH-HHHHHHccCcC
Confidence 46899999999999999887544 89999999994 4554678999999999999999999999997 56899999999
Q ss_pred CceeecCcchhhhhccc--Cceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076 81 GLKATCYPSFMEQLAPA--CAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145 (145)
Q Consensus 81 g~~~t~~~~~~~~l~~~--~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~ 145 (145)
|+++|+||...+.+++. +..+.+ ..++.|||++||+|+.+++++++++|++++|+++++++++.|
T Consensus 117 ~~~~t~~~~~~~~l~~~~~~~~~~~~~~~v~dg~i~Ta~g~~~~~d~~l~li~~~~g~~~a~~~a~~l 184 (187)
T cd03137 117 GRRATTHWAYAEDLARRFPAVRVDPDVLYVDDGNVWTSAGVTAGIDLCLHLVREDLGAAVANRVARRL 184 (187)
T ss_pred CCceeehHhhHHHHHHHCCCCEEecCCEEEecCCEEEcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 99999999999999775 234443 468899999999999999999999999999999999999764
No 6
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=100.00 E-value=4.8e-32 Score=190.76 Aligned_cols=144 Identities=44% Similarity=0.665 Sum_probs=134.6
Q ss_pred CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076 2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG 81 (145)
Q Consensus 2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g 81 (145)
..+|.++.|..+.+|..+.|.-.++||+++||||.++.+.+..++.+.+.+++|.+.+++|++||+|+.++|+..|++.|
T Consensus 43 ~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al~a~gl~~g 122 (247)
T KOG2764|consen 43 KEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTALAAHGLLGG 122 (247)
T ss_pred CcccccccceEecccccchhhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHHhhcccccc
Confidence 46889999999999998888777899999999998788999999999999999999999999999998778888899889
Q ss_pred ceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076 82 LKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145 (145)
Q Consensus 82 ~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~ 145 (145)
+++|+||...+.+.+.|+.|++.+++.|||++|++|+..+++|++.|+|.+.|++.+.++.+.|
T Consensus 123 kk~T~~ps~k~~L~~~gy~yve~~vv~dG~liTSrGpgT~~eFal~lvEqL~GKeka~~v~~~l 186 (247)
T KOG2764|consen 123 KKCTAHPSVKPKLEEGGYKYVEPRVVKDGNLITSRGPGTAFEFALKLVEQLGGKEKANEVKKPL 186 (247)
T ss_pred ceeeeccchhhhHhhcCcEEecCCeEEeCcEEeccCCCchHHHHHHHHHHhcCchhhhhhhccc
Confidence 9999999999999887899999999999999999999999999999999999999999988754
No 7
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=99.98 E-value=3.6e-32 Score=203.61 Aligned_cols=140 Identities=19% Similarity=0.283 Sum_probs=125.7
Q ss_pred CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
++++|.+++|+.|.+|..+++.. ++|+++++||. .+......+++.+||++.+++|..|+++|+| +|+||++|||+
T Consensus 53 ~g~~V~ss~G~~i~~d~~~~~~~--~~~~v~v~~g~-~~~~~~~~~~l~~~Lr~~~~~G~~l~gictG-af~LA~aGLLd 128 (328)
T COG4977 53 DGGPVRSSSGLSIAPDGGLEAAP--PIDILPVCGGL-GPERPVNAPALLAWLRRAARRGARLGGLCTG-AFVLAEAGLLD 128 (328)
T ss_pred CCCCcccCCCceEecCCcccccC--cceEEEEecCC-CcccccchHHHHHHHHHHHhcCCeEEEehHh-HHHHHHhcccC
Confidence 46799999999999999998876 59999998884 4554444489999999999999999999995 78999999999
Q ss_pred CceeecCcchhhhhcccCcee---ccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076 81 GLKATCYPSFMEQLAPACAAT---VESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145 (145)
Q Consensus 81 g~~~t~~~~~~~~l~~~~~~~---~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~ 145 (145)
||++|+||.+.+.|++. +|- .+..+++||+++||+|..+++|++++||++.+|.++|++|++.|
T Consensus 129 GrrattHW~~~~~f~e~-FP~v~~~~~lfviDg~~~T~aG~~a~iDl~L~lI~~~~G~~~a~~va~~l 195 (328)
T COG4977 129 GRRATTHWEHAEDFQER-FPDVRVTDRLFVIDGDRITCAGGTAAIDLMLALIRRDFGAALANRVARQL 195 (328)
T ss_pred CCCeeeccccHHHHHHh-CCCCCCCCceEEecCCEEEcCCchHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 99999999999999887 554 35679999999999999999999999999999999999999864
No 8
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=99.98 E-value=1e-31 Score=182.67 Aligned_cols=130 Identities=37% Similarity=0.579 Sum_probs=116.8
Q ss_pred CCeeeecCC---CEEeccccccCCCCCCccEEEEcCCccChhccccC-hHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc
Q 045076 2 QLRVDACHG---VKIVADALVSDCRDAVFDLIALPVCMPDATNLKES-KVLETIVKKQASNGRLYAAVCASPAVALGSWG 77 (145)
Q Consensus 2 ~~~v~~~~G---~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~-~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag 77 (145)
+.+|++++| +.+.+|..++++++++||+||||||++++..+..+ +.++++++++++++|+|++||+|+ .+|+++|
T Consensus 10 ~~~v~~~~g~~~~~v~~d~~l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~-~~L~~~g 88 (147)
T PF01965_consen 10 GKEVTGSHGSFGIKVTPDKTLDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGP-AVLAAAG 88 (147)
T ss_dssp SSEEEBTTSHHHHEEESSEEGGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCH-HHHHHTT
T ss_pred CCeEEcCCCcCCEEEECCCcHHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCc-chhhccC
Confidence 468999999 99999999999999999999999997557777745 999999999999999999999987 4899999
Q ss_pred ccCCceeecCcchhhhhcccCceecc--ccEEEeC-CeEecCCcchHHHHHHHHHHHh
Q 045076 78 LLKGLKATCYPSFMEQLAPACAATVE--SRVQQDG-KVVTTRGPGTTMEFAVALVEQL 132 (145)
Q Consensus 78 ll~g~~~t~~~~~~~~l~~~~~~~~~--~~~v~dg-~iiT~~g~~~~~~~~l~li~~~ 132 (145)
+|+|+++|++|...+.++..+..|.+ ..+++|+ |+||++++.++.+|++++|+.+
T Consensus 89 ll~g~~~T~~~~~~~~~~~~g~~~~~~~~~~vvD~~nlIT~~~~~~~~~fa~~ive~L 146 (147)
T PF01965_consen 89 LLKGKKVTSYPNDEEDLENAGANYVDQDDPVVVDGGNLITGRGPGSAIEFALAIVEAL 146 (147)
T ss_dssp TTTTSEEC-SGGGHHHHHHTTTEEBSCSSSEEEETTTEEEESSGGGHHHHHHHHHHHH
T ss_pred ccCCceeecCccHHHHHHHCCCEEEecCCCeEEECCeEEECCChhhHHHHHHHHHHHc
Confidence 99999999999999988777788877 7899999 9999999999999999999986
No 9
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.97 E-value=3.7e-31 Score=182.94 Aligned_cols=129 Identities=26% Similarity=0.409 Sum_probs=117.4
Q ss_pred CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076 2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG 81 (145)
Q Consensus 2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g 81 (145)
+++|+++.|+.+.++..+++.++.+||+|+||||. ++..+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+|
T Consensus 36 ~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~-~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~-~~La~aglL~g 113 (166)
T TIGR01382 36 AGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGR-APEYLRLNNKAVRLVREFVEKGKPVAAICHGP-QLLISAGVLRG 113 (166)
T ss_pred CCceeccCCceeeccCChhhCCHHHCcEEEECCCC-CHHHhccCHHHHHHHHHHHHcCCEEEEEChHH-HHHHhcCccCC
Confidence 57899999999999999988877789999999994 55556678999999999999999999999975 68999999999
Q ss_pred ceeecCcchhhhhcccCceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076 82 LKATCYPSFMEQLAPACAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQL 132 (145)
Q Consensus 82 ~~~t~~~~~~~~l~~~~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~ 132 (145)
+++|+||...+.+++.+..+++ +.++.|||+|||+|+.++.+|+.++++.+
T Consensus 114 ~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~fa~~~~~~l 165 (166)
T TIGR01382 114 KKLTSYPAIIDDVKNAGAEYVDIEVVVVDGNLVTSRVPDDLPAFNREFLKLL 165 (166)
T ss_pred CEEEcCccHHHHHHHCCCeEEcCCCEEEECCEEEeCCcccHHHHHHHHHHHh
Confidence 9999999999999887778887 69999999999999999999999999975
No 10
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=99.97 E-value=1e-30 Score=185.37 Aligned_cols=141 Identities=32% Similarity=0.554 Sum_probs=123.6
Q ss_pred CeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076 3 LRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL 82 (145)
Q Consensus 3 ~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~ 82 (145)
.+|++++|+.+.+|..+++++.++||+|+||||..+...+..++.+.+||+++++++++|++||+|+.++|+.+|+++|+
T Consensus 43 ~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~~gll~~~ 122 (196)
T PRK11574 43 LEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLVPHDLFPIG 122 (196)
T ss_pred ceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHhCCccCCC
Confidence 38999999999999999887667899999999954455567788999999999999999999999865567779999999
Q ss_pred eeecCcchhhhhcccCceeccccEEEeC--CeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076 83 KATCYPSFMEQLAPACAATVESRVQQDG--KVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145 (145)
Q Consensus 83 ~~t~~~~~~~~l~~~~~~~~~~~~v~dg--~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~ 145 (145)
++|.++.+.+.+.. ..+.++++++|+ |++||+|+.+++||++++|++++|+++|+++++.|
T Consensus 123 ~~t~~~~~~~~~p~--~~~~~~~~v~d~~~~iiT~~G~~a~~dlal~li~~~~G~~~a~~va~~~ 185 (196)
T PRK11574 123 NMTGFPTLKDKIPA--EQWQDKRVVWDARVNLLTSQGPGTAIDFALKIIDLLVGREKAHEVASQL 185 (196)
T ss_pred eEeeCcChHHhccc--CcccCCCEEEeCCccEEeCCCcchHHHHHHHHHHHhcCHHHHHHHHhhh
Confidence 99998888777633 566777888886 99999999999999999999999999999999864
No 11
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=99.97 E-value=8.1e-31 Score=180.45 Aligned_cols=128 Identities=41% Similarity=0.689 Sum_probs=113.5
Q ss_pred CCeee-ecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 2 QLRVD-ACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 2 ~~~v~-~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
++++. ++.|+.+.+|..+++.++++||+||||||...+..+.+++.+++||+++++++++|+++|+| .++|+++|+|+
T Consensus 35 ~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g-~~~La~aglL~ 113 (163)
T cd03135 35 KKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAA-PAVLAKAGLLK 113 (163)
T ss_pred CCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchh-HHHHHHcCCcC
Confidence 56665 58999999999999887679999999999524555678999999999999999999999997 56899999999
Q ss_pred CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076 81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL 132 (145)
Q Consensus 81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~ 132 (145)
||++|+||...+.+ . +..+.++.+++|||++||+|+.+++++++++|+++
T Consensus 114 g~~~T~~~~~~~~~-~-~~~~~~~~~v~dg~l~T~~g~~s~~d~al~li~~l 163 (163)
T cd03135 114 GKKATCYPGFEDKL-G-GANYVDEPVVVDGNIITSRGPGTAFEFALKIVEAL 163 (163)
T ss_pred CCeEEECchHHHhc-C-CCeEecCCEEEECCEEEcCCcccHHHHHHHHHHhC
Confidence 99999999988887 2 36777889999999999999999999999999874
No 12
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=99.97 E-value=2e-30 Score=179.43 Aligned_cols=126 Identities=27% Similarity=0.425 Sum_probs=107.7
Q ss_pred CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
+++||++++|+.+.++..+++.. ++|+||||||. .......++.+++||+++++++++|+++|+| +++|+++|+|+
T Consensus 38 ~~~~v~~s~g~~i~~~~~~~~~~--~~D~lvvpg~~-~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~ 113 (166)
T PF13278_consen 38 TGGPVTSSSGLRIQPDGSLDDAP--DFDILVVPGGP-GFDAAAKDPALLDWLRQQHAQGTYIAAICTG-ALLLAEAGLLD 113 (166)
T ss_dssp SSCEEEBTTSEEEEESEETCCCS--CCSEEEEE-ST-THHHHTT-HHHHHHHHHHHCCTSEEEEETTH-HHHHHHTTTTT
T ss_pred CCCeeeecCCeEEEeccChhhcc--cCCEEEeCCCC-CchhcccCHHHHHHhhhhhccceEEeeeehH-HHHHhhhhccC
Confidence 46789999999999999999854 89999999995 4455678899999999999999999999996 67999999999
Q ss_pred CceeecCcchhhhhcccCce--ec-cccEEEeCCeEecCCcchHHHHHHHHHH
Q 045076 81 GLKATCYPSFMEQLAPACAA--TV-ESRVQQDGKVVTTRGPGTTMEFAVALVE 130 (145)
Q Consensus 81 g~~~t~~~~~~~~l~~~~~~--~~-~~~~v~dg~iiT~~g~~~~~~~~l~li~ 130 (145)
|+++|+||...+.+++.... +. ++.++.|||++||+|+.+++|++++|||
T Consensus 114 g~~~tt~~~~~~~l~~~~p~~~~~~~~~~v~dg~i~Ta~g~~~~~dl~l~li~ 166 (166)
T PF13278_consen 114 GRRATTHWSLAEALRERFPNVNVVSDQLFVDDGNIITAGGPTAAIDLALYLIE 166 (166)
T ss_dssp TSEE---GGGHHHHHHCTTCEEE-TSSSEEEETTEEEESSCCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhCCCccccCCCEEEECCCeEEecHHHHHHHHHHHHhC
Confidence 99999999999999887322 23 7789999999999999999999999996
No 13
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.97 E-value=1.4e-30 Score=179.94 Aligned_cols=127 Identities=27% Similarity=0.424 Sum_probs=115.7
Q ss_pred CCeeeecCCC-EEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 2 QLRVDACHGV-KIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 2 ~~~v~~~~G~-~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
+++|+++.|+ .+.+|..+++.+..+||+|+||||. +...+..++.+++||+++++++++|+++|+| +++|+++|+|+
T Consensus 37 ~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~-~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G-~~~La~aglL~ 114 (165)
T cd03134 37 GGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGT-NPDKLRRDPDAVAFVRAFAEAGKPVAAICHG-PWVLISAGVVR 114 (165)
T ss_pred CcccccCcCceeecCCCChHHCCHHHCCEEEECCCC-ChhhhccCHHHHHHHHHHHHcCCeEEEEchH-HHHHHhcCccC
Confidence 5789999999 9999999988776689999999995 5655677899999999999999999999997 56899999999
Q ss_pred CceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHH
Q 045076 81 GLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVE 130 (145)
Q Consensus 81 g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~ 130 (145)
|+++|+||...+.+++.+..+.++++++|||+|||+|+.++++|++.+|+
T Consensus 115 g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~iiT~~~~~~~~~f~~~~~~ 164 (165)
T cd03134 115 GRKLTSYPSIKDDLINAGANWVDEEVVVDGNLITSRNPDDLPAFNRAILK 164 (165)
T ss_pred CCEeeCCHhHHHHHHHcCCeEecCCEEEECCEEEecCcchHHHHHHHHHh
Confidence 99999999999999877677888899999999999999999999999986
No 14
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=99.96 E-value=1.9e-29 Score=190.96 Aligned_cols=140 Identities=20% Similarity=0.301 Sum_probs=121.7
Q ss_pred CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
++++|++++|+.|.+|..+++.+ +||+||||||. +... ..++.+.+||+++++++++|++||+| .++||++|+|+
T Consensus 52 ~~~~v~ss~g~~i~~d~~~~~~~--~~D~livpGg~-~~~~-~~~~~l~~~l~~~~~~~~~i~aic~g-~~~La~aGlL~ 126 (322)
T PRK09393 52 EPGPLRAAGGITVVADGGLELLD--RADTIVIPGWR-GPDA-PVPEPLLEALRAAHARGARLCSICSG-VFVLAAAGLLD 126 (322)
T ss_pred CCCceEeCCCcEEeCCCCccccC--CCCEEEECCCC-cccc-cCCHHHHHHHHHHHHcCCEEEEEcHH-HHHHHhccCCC
Confidence 46799999999999999998754 89999999994 4433 46899999999999999999999997 46899999999
Q ss_pred CceeecCcchhhhhccc--Cceecc-ccEEEeCCeEecCCcchHHHHHHHHHHHhcChhHHHHHhCCC
Q 045076 81 GLKATCYPSFMEQLAPA--CAATVE-SRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGKADEVSGPL 145 (145)
Q Consensus 81 g~~~t~~~~~~~~l~~~--~~~~~~-~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~a~~va~~~ 145 (145)
|+++|+||.+.+.+++. ...+.+ ..++.|||++||+|+.+++++++++|++.+|.+.++++++.|
T Consensus 127 ~~~~Tth~~~~~~~~~~~p~~~~~~~~~~v~~g~iiT~~G~~a~~d~~l~li~~~~g~~~a~~va~~l 194 (322)
T PRK09393 127 GRRATTHWRYAERLQARYPAIRVDPDVLYVDEGQILTSAGSAAGIDLCLHLVRRDFGSEAANRVARRL 194 (322)
T ss_pred CCeeeecHhhHHHHHHHCCCCEEeCCceEEecCCEEecccHHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 99999999999999764 122333 368889999999999999999999999999999999988654
No 15
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=2.1e-29 Score=175.02 Aligned_cols=128 Identities=28% Similarity=0.427 Sum_probs=109.2
Q ss_pred CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
++++|++++|+.+.++..+++.+.++||+|+||||. .... ..++.+.+||+++++++++|+++|+| .++|+++|+|+
T Consensus 35 ~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~-~~~~-~~~~~l~~~l~~~~~~~~~i~aic~G-~~~La~aGlL~ 111 (170)
T cd03140 35 TGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGD-SWDN-PEAPDLAGLVRQALKQGKPVAAICGA-TLALARAGLLN 111 (170)
T ss_pred CCCeeEecCCeEEccccchhHCCHhHccEEEEcCCc-cccc-CCcHHHHHHHHHHHHcCCEEEEEChH-HHHHHHCCCcC
Confidence 467999999999999999998765689999999995 3333 47899999999999999999999997 56899999999
Q ss_pred CceeecCcc-hhhhhccc---CceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076 81 GLKATCYPS-FMEQLAPA---CAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL 132 (145)
Q Consensus 81 g~~~t~~~~-~~~~l~~~---~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~ 132 (145)
||++|+||. +.+.+++. +..++++.+++|||+|||+|. ++++|++++|+++
T Consensus 112 g~~~Tt~~~~~~~~~~~~~~~~~~~~~~~~v~dg~iiT~~g~-a~~d~al~~i~~l 166 (170)
T cd03140 112 NRKHTSNSLDFLKAHAPYYGGAEYYDEPQAVSDGNLITANGT-APVEFAAEILRAL 166 (170)
T ss_pred CCcccCChHHHHHHhccccCcccccccCcEEEcCCEEECCCc-CHHHHHHHHHHHc
Confidence 999999986 56666542 234568899999999999875 5899999999986
No 16
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.96 E-value=1.7e-28 Score=171.91 Aligned_cols=123 Identities=24% Similarity=0.349 Sum_probs=110.3
Q ss_pred cCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecC
Q 045076 8 CHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCY 87 (145)
Q Consensus 8 ~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~ 87 (145)
..|+.+.++..++++++.+||+|+||||. +...+..++.+.+||+++++++++|+++|+|+ ++|+++|+|+||++|+|
T Consensus 58 ~~g~~i~~~~~~~~~~~~~~D~liv~GG~-~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~-~~La~agll~g~~~T~h 135 (180)
T cd03169 58 KPGHRFAVTADFDEVDPDDYDALVIPGGR-APEYLRLDEKVLAIVRHFAEANKPVAAICHGP-QILAAAGVLKGRRCTAY 135 (180)
T ss_pred cCCcEEeccCCcccCCHhHCCEEEEcCCC-ChhhhccCHHHHHHHHHHHHcCCEEEEECcHH-HHHHHcCccCCCEEecc
Confidence 46999999999998877789999999995 55545578899999999999999999999975 68999999999999999
Q ss_pred cchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076 88 PSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL 132 (145)
Q Consensus 88 ~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~ 132 (145)
|...+.+++.+..+.+++++.|||+|||+|+.++.+|+.++++.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~v~D~~iiT~~~~~~~~~f~~~~~~~l 180 (180)
T cd03169 136 PACKPEVELAGGTVVDDGVVVDGNLVTAQAWPDHPAFLREFLKLL 180 (180)
T ss_pred cchHHHHHHCCCEEeeccEEEECCEEEecCCchHHHHHHHHHHhC
Confidence 999999987766677888999999999999999999999999864
No 17
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=99.96 E-value=7.8e-29 Score=179.42 Aligned_cols=124 Identities=21% Similarity=0.249 Sum_probs=107.2
Q ss_pred cCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc-------cccC
Q 045076 8 CHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW-------GLLK 80 (145)
Q Consensus 8 ~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a-------gll~ 80 (145)
+.+..+.++..+++++.++||+||||||++++.++.+++.+.++|++|++++|+|++||+|++ +|+.+ ++++
T Consensus 76 ~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~-~L~~a~~~~~g~~ll~ 154 (231)
T cd03147 76 DFWKKLKNIKKADEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPA-ILANLKDPKTGKPLIK 154 (231)
T ss_pred HHHHHHhccCChhHCCHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHH-HHHhhhcccCCCcccC
Confidence 345567788889999889999999999976677889999999999999999999999999987 67776 9999
Q ss_pred CceeecCcch-------------------hhhhcccCceecc------ccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076 81 GLKATCYPSF-------------------MEQLAPACAATVE------SRVQQDGKVVTTRGPGTTMEFAVALVEQL 132 (145)
Q Consensus 81 g~~~t~~~~~-------------------~~~l~~~~~~~~~------~~~v~dg~iiT~~g~~~~~~~~l~li~~~ 132 (145)
||++|+|+.. ++.+++.|+.|.+ ..+++|||+||++++.++.+|++.+++.+
T Consensus 155 Gk~vT~~~~~ee~~~~~~~~~~~~~~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgnLITgq~p~sa~~~a~~iv~~l 231 (231)
T cd03147 155 GKTVTGFTDKGEEIMGVMEILKKRNLESIEDIAERAGANFIRPPGPWDDFTVVDGRIVTGSNPASATSTAEAAIKAL 231 (231)
T ss_pred CCEEEeeCcHHHHhhhhhhhhcccCCccHHHHHHHcCCEEEccCCCCCCcEEEcCCEEeCCCcccHHHHHHHHHHhC
Confidence 9999999975 3445556777764 34999999999999999999999999874
No 18
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=99.94 E-value=1.6e-27 Score=171.96 Aligned_cols=123 Identities=28% Similarity=0.369 Sum_probs=105.3
Q ss_pred CCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc------ccCCc
Q 045076 9 HGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWG------LLKGL 82 (145)
Q Consensus 9 ~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag------ll~g~ 82 (145)
.|..+.++..++++++++||+|+||||......+..++.+++||+++++++++|++||+|+ ++|+++| +|+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~-~~La~ag~~~~~~ll~gr 151 (221)
T cd03141 73 FKKKLANTKKLSDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGP-AALLNVKLSDGKSLVAGK 151 (221)
T ss_pred HHHHHHccCChhHCCHhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchH-HHHHhccCcCCCeeeCCc
Confidence 4455778889999988899999999996444567789999999999999999999999976 5899999 79999
Q ss_pred eeecCcchhhh---------------hcccCceecc-----ccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076 83 KATCYPSFMEQ---------------LAPACAATVE-----SRVQQDGKVVTTRGPGTTMEFAVALVEQL 132 (145)
Q Consensus 83 ~~t~~~~~~~~---------------l~~~~~~~~~-----~~~v~dg~iiT~~g~~~~~~~~l~li~~~ 132 (145)
++|+||...+. +++.|..|.+ ..+|+|+|+||++++.++.+|++++|+.+
T Consensus 152 ~~T~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~vv~D~~lvT~~~p~s~~~~a~~~i~~l 221 (221)
T cd03141 152 TVTGFTNEEEEAAGLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDGRLITGQNPASAAAVAEALVKAL 221 (221)
T ss_pred EEeccCCHHHHhcCccCcCCcCHHHHHHHcCCEeecCCCCCCCEEEeCCEeeCCCchhHHHHHHHHHHhC
Confidence 99999976544 5555666654 45999999999999999999999999864
No 19
>PRK04155 chaperone protein HchA; Provisional
Probab=99.94 E-value=3.1e-26 Score=170.10 Aligned_cols=109 Identities=24% Similarity=0.343 Sum_probs=97.8
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc------ccCCceeecCcch-------
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWG------LLKGLKATCYPSF------- 90 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag------ll~g~~~t~~~~~------- 90 (145)
+++||+||||||++.+..+..++.+.++|+++++++|+|++||||++ +|..++ +++||++|+++..
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa-~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~ 223 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPA-ALLAAGVDHGDNPLNGYSICAFPDALDKQTPE 223 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHH-HHHHcCCcCCCcccCCCEEeeCCCHHHhhccc
Confidence 57999999999987778899999999999999999999999999987 577788 9999999999876
Q ss_pred ------------hhhhcccCceecc----ccEEEeCCeEecCCcchHHHHHHHHHHHhc
Q 045076 91 ------------MEQLAPACAATVE----SRVQQDGKVVTTRGPGTTMEFAVALVEQLY 133 (145)
Q Consensus 91 ------------~~~l~~~~~~~~~----~~~v~dg~iiT~~g~~~~~~~~l~li~~~~ 133 (145)
.+.|++.|+.+++ ..+|+|||+||++++.++.+|++.+++.+.
T Consensus 224 ~~~~~~~~~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~LITGq~P~sa~~fa~~~~~~Ll 282 (287)
T PRK04155 224 IGYMPGHLTWLFGEELKKMGVNIVNDDITGRVHKDRKLLTGDSPLASNALGKLAAQELL 282 (287)
T ss_pred cccccccccchHHHHHHHcCCEEEcCCCCCCEEEeCCEEeCCChhHHHHHHHHHHHHHH
Confidence 4556667778877 579999999999999999999999999876
No 20
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=99.94 E-value=2.5e-26 Score=166.49 Aligned_cols=123 Identities=18% Similarity=0.303 Sum_probs=103.4
Q ss_pred CCEEeccccccCC------CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccc-----
Q 045076 10 GVKIVADALVSDC------RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGL----- 78 (145)
Q Consensus 10 G~~i~~d~~~~~~------~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agl----- 78 (145)
+..+..+..++++ ++++||+||+|||++++.++..++.+.++++++++++|+|++||||++ +|..+++
T Consensus 74 ~~~l~~~~~l~~v~~~~~~~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~-~L~~a~l~~g~~ 152 (232)
T cd03148 74 KSKLRNPKKLADVVASLNADDSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPA-AFLAARHGGGKN 152 (232)
T ss_pred HHHhcCCCCHHHhhhhccCChhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHH-HHHhccCCCCCe
Confidence 3446677777777 456999999999987788899999999999999999999999999987 5777888
Q ss_pred -cCCceeecCcchhhh--------------------hcccCceeccc----cEEEeCCeEecCCcchHHHHHHHHHHHhc
Q 045076 79 -LKGLKATCYPSFMEQ--------------------LAPACAATVES----RVQQDGKVVTTRGPGTTMEFAVALVEQLY 133 (145)
Q Consensus 79 -l~g~~~t~~~~~~~~--------------------l~~~~~~~~~~----~~v~dg~iiT~~g~~~~~~~~l~li~~~~ 133 (145)
++||++|+++..++. +++.|+.|... .+|+|||+||+++|.|+..++..+|+.+.
T Consensus 153 ll~Gk~vT~f~~~eE~~~~~~~~~~~~~~pf~le~~L~~~Ga~~~~~~~~~~vv~Dg~LiTGqnP~Sa~~~a~~~~~~~~ 232 (232)
T cd03148 153 PLEGYSVCVFPDSLDEGANIEIGYMPGHLTWLVGEELKKMGMNIINDDITGRVHKDRKLLTGDSPLASNALGKLAAQEML 232 (232)
T ss_pred eeCCcEEecCCCHHHHhhhhccccccCcccccHHHHHHHcCCEEECCCCCcCEEEeCCEEeCCCcHhHHHHHHHHHHHhC
Confidence 999999999887553 23345555443 79999999999999999999999998763
No 21
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.93 E-value=7.4e-25 Score=154.33 Aligned_cols=132 Identities=32% Similarity=0.467 Sum_probs=116.9
Q ss_pred eeeecCC-CEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcc-ccCC
Q 045076 4 RVDACHG-VKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWG-LLKG 81 (145)
Q Consensus 4 ~v~~~~G-~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ag-ll~g 81 (145)
++.++.| ..+.++..++++++++||+|++|||..++..+..++.+++|++++++++++|++||+|++ +|+.+| +++|
T Consensus 43 ~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~-~L~~ag~ll~g 121 (188)
T COG0693 43 SVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPA-VLAAAGLLLKG 121 (188)
T ss_pred eeecccCcceEecccccccCCHhHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHH-HHhccccccCC
Confidence 5566665 777777899888878999999999954677777779999999999999999999999876 799999 9999
Q ss_pred ceeecCcchhhhhcc----cCceeccc-----cEEEeCC-eEecCCcchHHHHHHHHHHHhcChh
Q 045076 82 LKATCYPSFMEQLAP----ACAATVES-----RVQQDGK-VVTTRGPGTTMEFAVALVEQLYRKG 136 (145)
Q Consensus 82 ~~~t~~~~~~~~l~~----~~~~~~~~-----~~v~dg~-iiT~~g~~~~~~~~l~li~~~~g~~ 136 (145)
|++|+++...+.+.. .|..|++. .++.||+ ++|+.++.++.+++.++++.+.+..
T Consensus 122 ~~~t~~~~~~~~~~~~~~~~ga~~vd~~~~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~~ 186 (188)
T COG0693 122 RKATAFPDIEEDVKNGDGKAGANYVDAPLWTDEVVVDGNALVTGRNPASAPAFALELLKALGGAE 186 (188)
T ss_pred ceEeecCchHHHHHhHHHhcCceEeccccCcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhccc
Confidence 999999999888877 67888887 8999999 9999999999999999999988754
No 22
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.88 E-value=2.3e-22 Score=143.68 Aligned_cols=122 Identities=22% Similarity=0.239 Sum_probs=96.1
Q ss_pred eeeecCCCEEecc-------ccccCCCCCCccEEEEcCCccChhcc----------ccChHHHHHHHHHHHCCCeEEEEc
Q 045076 4 RVDACHGVKIVAD-------ALVSDCRDAVFDLIALPVCMPDATNL----------KESKVLETIVKKQASNGRLYAAVC 66 (145)
Q Consensus 4 ~v~~~~G~~i~~d-------~~~~~~~~~~~D~liipGG~~~~~~~----------~~~~~l~~~l~~~~~~~~~v~aic 66 (145)
.+..+.++.+.++ ..++++++++||+||||||++.+.++ +.++.+++++++|++++|+|++||
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIC 132 (213)
T cd03133 53 AEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAIC 132 (213)
T ss_pred ccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEEC
Confidence 3445667777665 67888888899999999996444433 248899999999999999999999
Q ss_pred chhHHHhhhccccCCceeecCc--chhhhhcccCceeccc---cEEEe--CCeEecCCcc---hHHHHHHH
Q 045076 67 ASPAVALGSWGLLKGLKATCYP--SFMEQLAPACAATVES---RVQQD--GKVVTTRGPG---TTMEFAVA 127 (145)
Q Consensus 67 ~g~~~~La~agll~g~~~t~~~--~~~~~l~~~~~~~~~~---~~v~d--g~iiT~~g~~---~~~~~~l~ 127 (145)
+|++ +|+++.. +||++|+|+ ..++.+++.|+.|+++ .+++| ||+|||+... +..+.++.
T Consensus 133 hgp~-~L~~~~~-kGr~vT~~~~~~~~~~l~~aGa~~~d~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~ 201 (213)
T cd03133 133 IAPA-LAAKILG-EGVEVTIGNDAGTAAAIEKMGAEHVNCPVEEIVVDEKNKVVTTPAYMLADSIHEIADG 201 (213)
T ss_pred HHHH-HHHHHhc-cCCeEEccCCHHHHHHHHHCCCEEEeCCCCeEEEECCCCEEeCccccCCCCHHHHHHh
Confidence 9987 6777655 999999999 8899998888888753 66776 7999998754 34444443
No 23
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.87 E-value=8.4e-22 Score=141.43 Aligned_cols=113 Identities=19% Similarity=0.216 Sum_probs=91.7
Q ss_pred eeecCCCEEecc-------ccccCCCCCCccEEEEcCCccChhc----------cccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 5 VDACHGVKIVAD-------ALVSDCRDAVFDLIALPVCMPDATN----------LKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 5 v~~~~G~~i~~d-------~~~~~~~~~~~D~liipGG~~~~~~----------~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+..+.++.+.++ ..++++++++||+||||||++.+.+ ++.++.+.+++++|++++|+|++||+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAICh 136 (217)
T PRK11780 57 MGETRNVLVESARIARGEIKDLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICI 136 (217)
T ss_pred cccccceeeehhhhhccCCCchhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECH
Confidence 444555555544 5788888889999999999754433 34589999999999999999999999
Q ss_pred hhHHHhhhccccCCceeecC--cchhhhhcccCceeccc---cEEEe--CCeEecCCcc
Q 045076 68 SPAVALGSWGLLKGLKATCY--PSFMEQLAPACAATVES---RVQQD--GKVVTTRGPG 119 (145)
Q Consensus 68 g~~~~La~agll~g~~~t~~--~~~~~~l~~~~~~~~~~---~~v~d--g~iiT~~g~~ 119 (145)
|++ +|+.+.. +||++|++ +.....+++.|+.|++. .+|+| +|+||+....
T Consensus 137 gp~-iL~~~~~-~gr~~T~~~~~~~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~ 193 (217)
T PRK11780 137 APA-MLPKILG-AGVKLTIGNDEDTAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYM 193 (217)
T ss_pred HHH-HHHHHhc-cCcEEEecCChhhHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCccc
Confidence 987 5777522 89999999 99999999999999875 67888 7899998643
No 24
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=99.70 E-value=1.6e-16 Score=107.20 Aligned_cols=78 Identities=19% Similarity=0.171 Sum_probs=68.4
Q ss_pred CCCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhcccc
Q 045076 1 KQLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLL 79 (145)
Q Consensus 1 ~~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll 79 (145)
++++|++++|+++.++..+++.+..+||+|+||||......+..++.+.+||+++++++++|+++|+| .++|+++|+|
T Consensus 37 ~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G-~~~La~aGll 114 (142)
T cd03132 37 TLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEG-SDLLEAAGIP 114 (142)
T ss_pred CcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCch-HHHHHHcCCC
Confidence 46789999999999999999887678999999999644444567899999999999999999999997 5689999996
No 25
>PRK11249 katE hydroperoxidase II; Provisional
Probab=99.30 E-value=8.2e-12 Score=102.71 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=70.3
Q ss_pred CCeeeecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 2 QLRVDACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 2 ~~~v~~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
+++|+++.|..|.+|.++++.+...||+|+||||..+...+..++.++.||+++++++|+|+++|+| ..+|+++||..
T Consensus 634 ~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG-~~LLaaAGL~~ 711 (752)
T PRK11249 634 MGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDA-RKLKAALKLPD 711 (752)
T ss_pred CCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCcc-HHHHHhcCCCC
Confidence 5789999999999999999987778999999999556677888999999999999999999999997 56899999955
No 26
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.18 E-value=7.1e-11 Score=86.20 Aligned_cols=90 Identities=22% Similarity=0.182 Sum_probs=64.7
Q ss_pred CCCccEEEEcCCccChhccc-----cChH-HHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhhhhccc
Q 045076 24 DAVFDLIALPVCMPDATNLK-----ESKV-LETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPA 97 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~-----~~~~-l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~ 97 (145)
.++||.|+||||....+.+. .... +.++|+++.+++++|.+||.|.+ +|+++|+|.|+. +.++......+..
T Consensus 41 l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~Q-lL~~~gll~g~~-~~~~~~~~~~~~~ 118 (238)
T cd01740 41 LDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQ-ILVELGLLPGAL-IRNKGLKFICRWQ 118 (238)
T ss_pred HhhCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHH-HHHHcCCCcccc-ccCCCCceecccc
Confidence 45899999999953222222 1223 88999999999999999999876 799999999966 6666544433222
Q ss_pred CceeccccEEEeCCeEecC
Q 045076 98 CAATVESRVQQDGKVVTTR 116 (145)
Q Consensus 98 ~~~~~~~~~v~dg~iiT~~ 116 (145)
..|++..++.+++++|+.
T Consensus 119 -~~~v~~~v~~~~si~t~~ 136 (238)
T cd01740 119 -NRFVTLRVENNDSPFTKG 136 (238)
T ss_pred -CceEEEEEcCCCCceecC
Confidence 245666667778888876
No 27
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.94 E-value=2.8e-09 Score=76.93 Aligned_cols=60 Identities=22% Similarity=0.234 Sum_probs=47.8
Q ss_pred CCCCccEEEEcCCccChh-----ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCce
Q 045076 23 RDAVFDLIALPVCMPDAT-----NLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLK 83 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~-----~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~ 83 (145)
+.++||+|+||||..... ....++.+.+||+++.++++++++||+|. .+|+++|||+|+-
T Consensus 38 ~l~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~-qlLa~~GLL~g~l 102 (219)
T PRK03619 38 DLDGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGF-QILTEAGLLPGAL 102 (219)
T ss_pred CCCCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHH-HHHHHcCCCCCeE
Confidence 345899999999953222 12345789999999999999999999975 5899999999853
No 28
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.81 E-value=1.8e-08 Score=68.44 Aligned_cols=109 Identities=24% Similarity=0.284 Sum_probs=73.8
Q ss_pred ccCCCCCCccEEEEcCCccChhccc----------cChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc-cccCCceee--
Q 045076 19 VSDCRDAVFDLIALPVCMPDATNLK----------ESKVLETIVKKQASNGRLYAAVCASPAVALGSW-GLLKGLKAT-- 85 (145)
Q Consensus 19 ~~~~~~~~~D~liipGG~~~~~~~~----------~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a-gll~g~~~t-- 85 (145)
+.+.++++||++++|||++...++. -++.+..+.+.+++.+|+++-+|-+++ +|.+. |. ..+.|
T Consensus 78 l~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~-m~pki~g~--~~~~TIG 154 (217)
T COG3155 78 LAQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPA-MLPKIFGF--PLRLTIG 154 (217)
T ss_pred hhhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHH-HHHHHcCC--ceeEEec
Confidence 4556678999999999987665553 268999999999999999999999987 46653 32 23444
Q ss_pred cCcchhhhhcccCceecc---ccEEE--eCCeEecCCcchHHHHHHHHHHHhcC
Q 045076 86 CYPSFMEQLAPACAATVE---SRVQQ--DGKVVTTRGPGTTMEFAVALVEQLYR 134 (145)
Q Consensus 86 ~~~~~~~~l~~~~~~~~~---~~~v~--dg~iiT~~g~~~~~~~~l~li~~~~g 134 (145)
..+...+.+++.|...++ ..+|+ +++++|.. ++-++..|-+.-.|
T Consensus 155 nD~dTa~a~~~mG~eHv~cPvd~iV~D~~~KvvtTP----AYMLA~~IaeAAsG 204 (217)
T COG3155 155 NDIDTAEALEEMGAEHVPCPVDDIVVDEDNKVVTTP----AYMLAQNIAEAASG 204 (217)
T ss_pred CCccHHHHHHHhCcccCCCCccceeecCCCceecCh----HHHHHHHHHHHHhh
Confidence 345667778777766543 23444 46788874 33344444444333
No 29
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=98.71 E-value=6.9e-08 Score=70.07 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=46.1
Q ss_pred CCCccEEEEcCCccChhc-----cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076 24 DAVFDLIALPVCMPDATN-----LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL 82 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~-----~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~ 82 (145)
.++||+|+||||....+. +..+..+.++|+++.+++++|.+||.|.. +|+++|+|.|.
T Consensus 38 l~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~Q-lLa~~GlL~G~ 100 (227)
T TIGR01737 38 LPDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQ-ILVEAGLLPGA 100 (227)
T ss_pred CCCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHH-HHHHcCCCCCc
Confidence 458999999999532211 23356788999999999999999999754 89999999984
No 30
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=98.59 E-value=1.2e-07 Score=70.08 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=43.9
Q ss_pred CCCccEEEEcCCccChhccccC--------hHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076 24 DAVFDLIALPVCMPDATNLKES--------KVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG 81 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~--------~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g 81 (145)
.++||+|+||||....+.+... +.+.+.|+++.+++++|.+||+|.+ +|+++|+|.|
T Consensus 46 l~~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~Q-lLa~~GlLpg 110 (261)
T PRK01175 46 VSDYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQ-VLVELGLLPG 110 (261)
T ss_pred hhhCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHH-HHHHCCCCCC
Confidence 4589999999995322222221 2344788999999999999999877 7999999987
No 31
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.56 E-value=5.9e-08 Score=67.67 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=42.2
Q ss_pred CCccEEEEcCCccChh--ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh----ccccCC
Q 045076 25 AVFDLIALPVCMPDAT--NLKESKVLETIVKKQASNGRLYAAVCASPAVALGS----WGLLKG 81 (145)
Q Consensus 25 ~~~D~liipGG~~~~~--~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~----agll~g 81 (145)
++||.|++||| .+.. .+.++..+.+.|+++.+ ++++++||.|+. +|++ .|++++
T Consensus 38 ~~~D~LILPGG-~~t~~~~ll~~~~l~~~Ik~~~~-~kpilGICaG~q-lL~~~s~~Lg~idg 97 (179)
T PRK13526 38 DSIDRLVIPGG-ESTTLLNLLNKHQIFDKLYNFCS-SKPVFGTCAGSI-ILSKGEGYLNLLDL 97 (179)
T ss_pred hCCCEEEECCC-hHHHHHHHhhhcCcHHHHHHHHc-CCcEEEEcHHHH-HHHccCCCCCCccE
Confidence 48999999999 4444 55666779999999875 789999999876 6887 355554
No 32
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.52 E-value=3e-07 Score=65.37 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=41.1
Q ss_pred CccEEEEcCCccC--hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPD--ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~--~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|+||||||... +..+.++..+.+.|+++.+++++|.+||.|.+ +|++.
T Consensus 40 ~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~q-lL~~~ 91 (198)
T cd03130 40 DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLM-YLGES 91 (198)
T ss_pred CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHH-HHHHH
Confidence 5999999999533 34566677899999999999999999999876 67764
No 33
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=98.38 E-value=5.2e-07 Score=63.49 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=40.5
Q ss_pred CCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||+|+||||.... ..+..+..+.++|+++.++++++.+||.|.. +|++.
T Consensus 35 ~~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~q-lL~~~ 86 (184)
T TIGR03800 35 DEIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLI-MLAKE 86 (184)
T ss_pred ccCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHH-HHHhh
Confidence 489999999995321 2334566788999999999999999999866 68877
No 34
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.31 E-value=1.7e-06 Score=62.01 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=44.8
Q ss_pred CccEEEEcCCccChhccc-----cChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076 26 VFDLIALPVCMPDATNLK-----ESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG 81 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~-----~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g 81 (145)
+||+|++|||..--+.++ .-.++++-++++.++++++.+||+|-+ +|.++|||.|
T Consensus 43 ~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQ-iL~e~gLlPG 102 (231)
T COG0047 43 DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQ-ILSEAGLLPG 102 (231)
T ss_pred CccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhH-HHHHcCcCCc
Confidence 699999999973222222 236788888999999999999999877 6889999999
No 35
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.20 E-value=3.8e-06 Score=66.76 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=42.5
Q ss_pred CCccEEEEcCCccC--hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPD--ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~--~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+||+|++|||.+. ...+..+..+.+.|+++.++|++|.++|.|.. +|++.
T Consensus 286 ~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~-~L~~~ 338 (451)
T PRK01077 286 PDCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLM-YLGES 338 (451)
T ss_pred CCCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHH-HHHhh
Confidence 38999999999743 34567788899999999999999999999765 67763
No 36
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.19 E-value=3.5e-06 Score=59.73 Aligned_cols=66 Identities=23% Similarity=0.257 Sum_probs=46.1
Q ss_pred cCCCEEeccccccCCCCCCccEEEEcCCccChhcccc--ChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 8 CHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKE--SKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 8 ~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~--~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
..|..+..-....+ ++++|+|++|||......+.. +..+.+.|+++.+++++|.+||.|.. +|++.
T Consensus 21 ~~G~~~~~~~~~~~--~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~q-lL~~~ 88 (194)
T cd01750 21 EPGVDVRYVEVPEG--LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQ-MLGKY 88 (194)
T ss_pred cCCceEEEEeCCCC--CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHH-Hhhhh
Confidence 34555554444444 348999999999522222222 45688999999999999999999866 67765
No 37
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.18 E-value=3.3e-06 Score=59.64 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=39.7
Q ss_pred CCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||.|++|||.... ..+..+..+.++++++.+++++|.+||.|.+ +|+.+
T Consensus 37 ~~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~Q-lL~~~ 88 (189)
T PRK13525 37 DEIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMI-LLAKE 88 (189)
T ss_pred ccCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence 489999999994322 1234456678999999999999999999876 67763
No 38
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=98.11 E-value=4.4e-06 Score=59.44 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=39.8
Q ss_pred CCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+||+||||||.... ..+..+..+.++|+++.++++++.+||.|.+ +|+.+
T Consensus 42 ~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Q-ll~~~ 93 (200)
T PRK13527 42 PDCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLI-LLAKE 93 (200)
T ss_pred ccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHH-HHHhh
Confidence 489999999995322 1233455689999999999999999999876 68776
No 39
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.10 E-value=5.2e-06 Score=56.97 Aligned_cols=52 Identities=25% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCCccEEEEcCCccCh--hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 24 DAVFDLIALPVCMPDA--TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 24 ~~~~D~liipGG~~~~--~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++++|+|+||||.+.. ..+.++..+.+.|+++.++|.+|.++|.| ..+|.+.
T Consensus 5 ~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG-~~~Lg~~ 58 (158)
T PF07685_consen 5 PPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGG-YQYLGES 58 (158)
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchH-HHHHHHH
Confidence 4589999999997432 23456788999999999999999999996 4567765
No 40
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.10 E-value=4.4e-06 Score=59.48 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=39.6
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||+|++|||......+...+.+.++++++.++++++.+||.|.. +|+++
T Consensus 37 ~~~d~iii~G~~~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q-~l~~~ 87 (200)
T PRK13143 37 LDADGIVLPGVGAFGAAMENLSPLRDVILEAARSGKPFLGICLGMQ-LLFES 87 (200)
T ss_pred ccCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 4899999999622222244556788999999999999999999876 68864
No 41
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.10 E-value=1.1e-05 Score=50.17 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=38.8
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHh
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVAL 73 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~L 73 (145)
..+||++++|||.........++.++++++++..++++++++|.|.. +|
T Consensus 44 ~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~-~l 92 (115)
T cd01653 44 LDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQ-LL 92 (115)
T ss_pred hhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhH-hH
Confidence 45899999999953333222478999999999999999999999754 45
No 42
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.00 E-value=1.8e-05 Score=47.09 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=36.9
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchh
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~ 69 (145)
..+||++++|||.........+..+.++++++..++++++++|.|.
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 89 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGA 89 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEeccc
Confidence 4589999999995333322247899999999999999999999964
No 43
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=97.93 E-value=2.4e-05 Score=54.65 Aligned_cols=55 Identities=15% Similarity=-0.052 Sum_probs=40.8
Q ss_pred cccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
..++.+..+||.|+++||..++. +.....++++++.+++++|.+||.|.+ +|+.+
T Consensus 31 ~~~~~~~~~~dgiil~GG~~~~~---~~~~~~~~~~~~~~~~~PvlGIC~G~Q-~l~~~ 85 (178)
T cd01744 31 DAEEILKLDPDGIFLSNGPGDPA---LLDEAIKTVRKLLGKKIPIFGICLGHQ-LLALA 85 (178)
T ss_pred CHHHHhhcCCCEEEECCCCCChh---HhHHHHHHHHHHHhCCCCEEEECHHHH-HHHHH
Confidence 33333345799999999943332 346788899999999999999999877 56654
No 44
>PRK08250 glutamine amidotransferase; Provisional
Probab=97.89 E-value=3.3e-05 Score=56.40 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=38.8
Q ss_pred CCccEEEEcCCccChhc-cccC-----hHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATN-LKES-----KVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~-~~~~-----~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||++||.||..+... .... ....+||+++.++++++.+||.|.. +|+.+
T Consensus 44 ~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 100 (235)
T PRK08250 44 DGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQ-LIGEA 100 (235)
T ss_pred cccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence 58999999999533321 1122 3668999999999999999999877 68775
No 45
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.87 E-value=1.7e-05 Score=56.66 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=37.7
Q ss_pred CCccEEEEcCCccChhcc--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNL--KESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||.|||||+......+ ...+.+.++|+++.++++++.+||.|.+ +|++.
T Consensus 36 ~~~d~iiipG~~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Q-ll~~~ 88 (205)
T PRK13141 36 LAADGVILPGVGAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQ-LLFES 88 (205)
T ss_pred ccCCEEEECCCCchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH-Hhhhc
Confidence 489999999973212221 1233578999999999999999999876 68875
No 46
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=97.87 E-value=3.2e-05 Score=57.18 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=42.1
Q ss_pred CCCCccEEEEcCCccChhcc----------ccChHHHHHHHHHHHC-CCeEEEEcchhHHHhhhccccCC
Q 045076 23 RDAVFDLIALPVCMPDATNL----------KESKVLETIVKKQASN-GRLYAAVCASPAVALGSWGLLKG 81 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~----------~~~~~l~~~l~~~~~~-~~~v~aic~g~~~~La~agll~g 81 (145)
..++||+|++|||...-+.+ ..++.+.+.|++|.++ ++++.+||+|-+ +|.++|||.+
T Consensus 43 ~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQ-iL~~~Gllp~ 111 (259)
T PF13507_consen 43 DLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQ-ILVELGLLPG 111 (259)
T ss_dssp -GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHH-HHCCCCCSTT
T ss_pred chhhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhH-HHHHhCcCCC
Confidence 45689999999996422222 2245678889999998 999999999766 8999999998
No 47
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.84 E-value=3.7e-05 Score=53.96 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=39.7
Q ss_pred CCCccEEEEcCCccCh--hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 24 DAVFDLIALPVCMPDA--TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 24 ~~~~D~liipGG~~~~--~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.++||.|+++||..+. ......+.+.++|+++.++++++.+||.|.. +|+.+
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q-~l~~~ 97 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQ-LLARA 97 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 4589999999995333 1122236789999999999999999999876 57654
No 48
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=97.84 E-value=2.6e-05 Score=54.78 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=38.9
Q ss_pred CCccEEEEcCCccCh-hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDA-TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~-~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
+++|.||+|||.... .....+..+.++|+++.++++++.++|.|.. +|+++
T Consensus 34 ~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~q-lL~~~ 85 (183)
T cd01749 34 EGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLI-LLAKE 85 (183)
T ss_pred ccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 489999999994211 1223455678999999999999999999765 68765
No 49
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.76 E-value=4.3e-05 Score=54.18 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=38.1
Q ss_pred CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||.|||||+ ...... ...+.+.++++++.+++++|.+||.|.+ +|+.+
T Consensus 35 ~~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q-~l~~~ 87 (198)
T cd01748 35 LSADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQ-LLFES 87 (198)
T ss_pred ccCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHH-Hhccc
Confidence 47999999997 233221 2334678999999999999999999866 68876
No 50
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=97.75 E-value=3.6e-05 Score=56.51 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=38.5
Q ss_pred CccEEEEcCCccC-hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPD-ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~-~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|.||+|||... +..+.....+.+.|+++.++++++.++|.|.. +|++.
T Consensus 38 ~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~Gmq-lLa~~ 88 (248)
T PLN02832 38 GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLI-FLAER 88 (248)
T ss_pred cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHH-HHHHH
Confidence 7999999999642 33344444688889998889999999999865 67664
No 51
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=97.70 E-value=5.7e-05 Score=52.89 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=36.1
Q ss_pred CccEEEEcCCcc-ChhccccChHHHHHHHHHHHCC-CeEEEEcchhHHHhhh
Q 045076 26 VFDLIALPVCMP-DATNLKESKVLETIVKKQASNG-RLYAAVCASPAVALGS 75 (145)
Q Consensus 26 ~~D~liipGG~~-~~~~~~~~~~l~~~l~~~~~~~-~~v~aic~g~~~~La~ 75 (145)
+.|.||||||.. .+..+.....+.+-|+++.++| ++|.+.|+| ..+||+
T Consensus 33 ~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAG-lIlLa~ 83 (188)
T PF01174_consen 33 GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAG-LILLAK 83 (188)
T ss_dssp T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHH-HHHHEE
T ss_pred cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHH-HHHhhh
Confidence 799999999953 2344556678899999999998 999999996 456776
No 52
>PRK07053 glutamine amidotransferase; Provisional
Probab=97.67 E-value=0.00012 Score=53.50 Aligned_cols=51 Identities=8% Similarity=0.017 Sum_probs=39.0
Q ss_pred CCccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+||.|||+||..+..+ ...-..+.++|+++.+.++++.+||-|.. +|+.+
T Consensus 46 ~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 99 (234)
T PRK07053 46 LEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQ-LIARA 99 (234)
T ss_pred cCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHH-HHHHH
Confidence 47999999998433322 12234788999999999999999999877 57765
No 53
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=97.64 E-value=5e-05 Score=52.89 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=44.5
Q ss_pred EEeccccccCCCCCCccEEEEcCCcc-ChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 12 KIVADALVSDCRDAVFDLIALPVCMP-DATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 12 ~i~~d~~~~~~~~~~~D~liipGG~~-~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
.+..-...++++ +.|+||||||.. ....+.....+.+-|+++..+|+++.+.|+| ..+||+
T Consensus 26 e~~~Vk~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAG-lIlLak 87 (194)
T COG0311 26 EVVEVKRPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAG-LILLAK 87 (194)
T ss_pred ceEEEcCHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechh-hhhhhh
Confidence 333334445554 899999999953 1344556677888899999999999999996 456775
No 54
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.58 E-value=9.9e-05 Score=52.43 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=36.7
Q ss_pred CCccEEEEcCCccChhc-c--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATN-L--KESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~-~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.++|.||+||+ +.... . .....+.++|+++.+.+++|.++|.|-+ +|+.+
T Consensus 36 ~~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Q-ll~~~ 88 (199)
T PRK13181 36 AGADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQ-LLFES 88 (199)
T ss_pred ccCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHH-Hhhhh
Confidence 37999999996 33221 1 1223467888888889999999999876 68875
No 55
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=97.50 E-value=0.00024 Score=56.60 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=40.2
Q ss_pred CccEEEEcCCccCh--hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDA--TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~--~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|+|+||||.+.. ..+..+..+.+.|+++.++|.+|.++|.|- .+|++.
T Consensus 286 ~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~-~~L~~~ 337 (449)
T TIGR00379 286 DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGL-MYLSQS 337 (449)
T ss_pred CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHH-HHHHhh
Confidence 89999999996422 335567889999999999999999999974 467763
No 56
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=97.41 E-value=0.00033 Score=49.20 Aligned_cols=49 Identities=10% Similarity=0.059 Sum_probs=39.4
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
..+||.+||+||..++.+ .+...++++++.++++++.+||-|-. +|+.+
T Consensus 40 ~~~~d~iii~Gg~~~~~d---~~~~~~~i~~~~~~~~PilGIC~G~Q-~la~~ 88 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYD---IEGLIELIREARERKIPILGICLGHQ-ILAHA 88 (192)
T ss_dssp TTTSSEEEEECESSSTTS---HHHHHHHHHHHHHTTSEEEEETHHHH-HHHHH
T ss_pred hcCCCEEEECCcCCcccc---ccccccccccccccceEEEEEeehhh-hhHHh
Confidence 458999999999543332 57888899999999999999999877 57764
No 57
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.39 E-value=0.00031 Score=51.31 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=38.4
Q ss_pred CCccEEEEcCCccChhc-cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATN-LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~-~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||.|||.||..+... ......+.+||+++.+.+++|.+||-|-. +|+.+
T Consensus 53 ~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Q-lla~a 104 (237)
T PRK09065 53 DDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQ-LLAHA 104 (237)
T ss_pred hhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHH-HHHHH
Confidence 48999999999533211 11225678999999999999999999877 57765
No 58
>PRK05665 amidotransferase; Provisional
Probab=97.35 E-value=0.00041 Score=50.82 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=39.3
Q ss_pred CCccEEEEcCCccChhc-cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATN-LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~-~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||.+||.||..+... ...-..+.+||+++.++++++.+||-|-. +||.+
T Consensus 56 ~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQ-lla~A 107 (240)
T PRK05665 56 EKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQ-LLALL 107 (240)
T ss_pred ccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHH-HHHHH
Confidence 47999999999533321 12235788999999999999999999877 68875
No 59
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.35 E-value=0.00043 Score=56.22 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=37.3
Q ss_pred CCccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.++|.||+||+ ..... ......+.+.|+++.++++++.+||.|.+ +|+.+
T Consensus 43 ~~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~Q-lLa~~ 95 (538)
T PLN02617 43 LNADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQ-LLFES 95 (538)
T ss_pred ccCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHH-HHhhh
Confidence 48999999997 33322 12233477888888889999999999877 68864
No 60
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.27 E-value=0.00056 Score=52.94 Aligned_cols=55 Identities=9% Similarity=-0.020 Sum_probs=40.0
Q ss_pred cccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.++++...++|.||++||..++.. .+..+++++++.+++++|.+||-|-+ +|+.+
T Consensus 210 ~~~~i~~~~~DGIvLSgGPgdp~~---~~~~~~~i~~~~~~~~PilGIClG~Q-lLa~a 264 (360)
T PRK12564 210 TAEEILALNPDGVFLSNGPGDPAA---LDYAIEMIRELLEKKIPIFGICLGHQ-LLALA 264 (360)
T ss_pred CHHHHHhcCCCEEEEeCCCCChHH---HHHHHHHHHHHHHcCCeEEEECHHHH-HHHHH
Confidence 334433236999999999534432 36778899999888999999999877 46654
No 61
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.0009 Score=47.66 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=43.0
Q ss_pred cccccCCCCCCccEEEEcCCccChhcccc--ChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 16 DALVSDCRDAVFDLIALPVCMPDATNLKE--SKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 16 d~~~~~~~~~~~D~liipGG~~~~~~~~~--~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
+......+..++|.+||.||. ....... .+...++|++....+++|.+||-|.. +||.+
T Consensus 35 ~~~~~~~~~~~~~giIlsGgp-~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Q-l~A~~ 95 (198)
T COG0518 35 TGDAEELPLDSPDGIIISGGP-MSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQ-LLAKA 95 (198)
T ss_pred CCCcccccccCCCEEEEcCCC-CCCccccccchhHHHHHHHhCCCCCCEEEEChhHH-HHHHH
Confidence 334445555567999999995 3322233 67888999998888899999999877 57764
No 62
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=97.24 E-value=0.00074 Score=47.63 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=36.0
Q ss_pred CCccEEEEcCCccChhc--------------cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATN--------------LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~--------------~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
..+|.||+|||...... ..++....++++++.+.+++|.+||.|.+ +|+.+
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q-~l~~~ 116 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQ-LLNVA 116 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHH-HHHHH
Confidence 47999999999421111 11123457888999889999999999876 46654
No 63
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.23 E-value=0.0005 Score=49.29 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=35.3
Q ss_pred cccCCCCCCccEEEEcCCccChhc----cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATN----LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~----~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
..+++ +++|.|||||+ ..... +........+++...++++++.+||.|.+ +|+++
T Consensus 35 ~~~~l--~~~d~lIlpG~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q-~l~~~ 93 (209)
T PRK13146 35 DPDAV--AAADRVVLPGV-GAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQ-LLFER 93 (209)
T ss_pred CHHHh--cCCCEEEECCC-CcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHH-HHhhc
Confidence 33444 48999999997 33221 11122233445555568999999999876 68887
No 64
>PRK00784 cobyric acid synthase; Provisional
Probab=97.23 E-value=0.0007 Score=54.47 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=45.2
Q ss_pred CCCEEeccccccCCCCCCccEEEEcCCccChhc--cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 9 HGVKIVADALVSDCRDAVFDLIALPVCMPDATN--LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 9 ~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~--~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.|..+..-...++++ ++|.|++|||.+.... +..+..+.+.|+++.+++++|.++|.|- .+|++.
T Consensus 275 ~g~~v~~~s~~~~l~--~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~-~~L~~~ 341 (488)
T PRK00784 275 PGVDVRYVRPGEPLP--DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGY-QMLGRR 341 (488)
T ss_pred CCCeEEEECCccccc--cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHH-HHHhhh
Confidence 455444433344444 7999999999632222 2345568899999999999999999975 467763
No 65
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.22 E-value=0.00072 Score=47.09 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=31.9
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
+..+||.||+|||...... ...+.+. +...+.++++.+||.|-+ +|+.+
T Consensus 38 ~~~~~dgvIl~Gg~~~~~~-~~~~~~~---~~~~~~~~PilGIC~G~Q-ll~~~ 86 (181)
T cd01742 38 KLKNPKGIILSGGPSSVYE-EDAPRVD---PEIFELGVPVLGICYGMQ-LIAKA 86 (181)
T ss_pred cccCCCEEEECCCcccccc-cccchhh---HHHHhcCCCEEEEcHHHH-HHHHh
Confidence 3458999999999432211 1122333 444456999999999877 57764
No 66
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=97.18 E-value=0.00057 Score=48.06 Aligned_cols=46 Identities=11% Similarity=-0.067 Sum_probs=34.1
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|.||+|||.... .+....+++++..+++++|.+||-|-. +|+.+
T Consensus 41 ~~~glii~Gg~~~~----~~~~~~~~i~~~~~~~~PilGIC~G~Q-ll~~~ 86 (188)
T TIGR00888 41 NPKGIILSGGPSSV----YAENAPRADEKIFELGVPVLGICYGMQ-LMAKQ 86 (188)
T ss_pred CCCEEEECCCCCCc----CcCCchHHHHHHHhCCCCEEEECHHHH-HHHHh
Confidence 45699999994322 122346788888889999999999877 57665
No 67
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=97.17 E-value=0.00055 Score=48.57 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=33.8
Q ss_pred CCccEEEEcCCccChhc----cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATN----LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~----~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
+++|.||+||+. ...+ +.... ...+++++.+.+++|.++|.|.+ +|+.+
T Consensus 35 ~~~d~lii~G~~-~~~~~~~~l~~~~-~~~l~~~~~~~~~pvlGiC~G~Q-ll~~~ 87 (196)
T TIGR01855 35 ELADKLILPGVG-AFGAAMARLRENG-LDLFVELVVRLGKPVLGICLGMQ-LLFER 87 (196)
T ss_pred ccCCEEEECCCC-CHHHHHHHHHHcC-cHHHHHHHHhCCCCEEEECHHHH-Hhhhc
Confidence 479999999952 2221 11112 33444778888999999999866 68887
No 68
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.16 E-value=0.0005 Score=48.78 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=29.3
Q ss_pred CccEEEEcCCccChhccc---cChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATNLK---ESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~---~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|.||+||. +.+.... +...+.+.+++ .+++|.+||.|.+ +|+.+
T Consensus 38 ~~d~iIlPG~-G~~~~~~~~l~~~~l~~~i~~---~~~PilGIClG~Q-ll~~~ 86 (196)
T PRK13170 38 AADKLFLPGV-GTAQAAMDQLRERELIDLIKA---CTQPVLGICLGMQ-LLGER 86 (196)
T ss_pred CCCEEEECCC-CchHHHHHHHHHcChHHHHHH---cCCCEEEECHHHH-HHhhh
Confidence 7899999994 2222211 11234444443 4799999999877 57765
No 69
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=97.16 E-value=0.0012 Score=47.59 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=37.4
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||.|||.||..++. +.....+|++++.+++++|.+||-|.. +|+.+
T Consensus 45 ~~~dgliisGGp~~~~---~~~~~~~~i~~~~~~~~PiLGIC~G~Q-lla~a 92 (214)
T PRK07765 45 AQFDGVLLSPGPGTPE---RAGASIDMVRACAAAGTPLLGVCLGHQ-AIGVA 92 (214)
T ss_pred cCCCEEEECCCCCChh---hcchHHHHHHHHHhCCCCEEEEccCHH-HHHHH
Confidence 3799999999953332 334567899999999999999999877 56654
No 70
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=97.15 E-value=0.00056 Score=49.14 Aligned_cols=57 Identities=26% Similarity=0.264 Sum_probs=39.6
Q ss_pred CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc---------cccCCce
Q 045076 25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW---------GLLKGLK 83 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a---------gll~g~~ 83 (145)
.++|.||+||+ +.+... .....+.+.|+++.++++++.+||.|-. +|++. |+++|+-
T Consensus 38 ~~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Q-ll~~~~~~~~~~glg~~~G~v 106 (210)
T CHL00188 38 AQVHALVLPGV-GSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLH-LLFETSEEGKEEGLGIYKGQV 106 (210)
T ss_pred hhCCEEEECCC-CchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHH-HHhhccccCCcCCccceeEEE
Confidence 37999999995 232211 1223456778888888999999999877 57763 5677753
No 71
>PRK06490 glutamine amidotransferase; Provisional
Probab=97.12 E-value=0.0011 Score=48.48 Aligned_cols=51 Identities=6% Similarity=-0.041 Sum_probs=38.5
Q ss_pred CCccEEEEcCCccChhc-cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATN-LKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~-~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||.+||.||..+..+ ......+.+||+++.++++++.+||-|.. +|+.+
T Consensus 51 ~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Q-lla~a 102 (239)
T PRK06490 51 EDHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQ-MLARH 102 (239)
T ss_pred cccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 47999999999533322 11124577999999999999999999877 68876
No 72
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.10 E-value=0.00086 Score=48.18 Aligned_cols=49 Identities=20% Similarity=0.208 Sum_probs=37.0
Q ss_pred CCccEEEEcCCccCh----hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDA----TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~----~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.++|.||+||+ ... ..+ ....+.++|+++.++++++.+||.|.. +|++.
T Consensus 36 ~~~d~iIlPG~-g~~~~~~~~l-~~~gl~~~i~~~~~~~~pilGiC~G~Q-~l~~~ 88 (210)
T PRK14004 36 ENSKALILPGD-GHFDKAMENL-NSTGLRSTIDKHVESGKPLFGICIGFQ-ILFES 88 (210)
T ss_pred ccCCEEEECCC-CchHHHHHHH-HHcCcHHHHHHHHHcCCCEEEECHhHH-HHHHh
Confidence 38999999998 332 222 233588888998899999999999877 57664
No 73
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=97.08 E-value=0.0012 Score=47.04 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=33.0
Q ss_pred CCccEEEEcCCccChhcccc---ChHHHHHHHHH-HHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKE---SKVLETIVKKQ-ASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~---~~~l~~~l~~~-~~~~~~v~aic~g~~~~La~a 76 (145)
.++|.||+||+ ++...... .-.+...|+++ .+++++|.+||.|.+ +|+.+
T Consensus 36 ~~~d~lilPG~-g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q-~l~~~ 89 (201)
T PRK13152 36 QKADKLLLPGV-GSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQ-LFLER 89 (201)
T ss_pred cCCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHH-HHhhc
Confidence 37999999998 44322111 11234445554 578999999999877 68765
No 74
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=97.07 E-value=0.00097 Score=58.70 Aligned_cols=57 Identities=16% Similarity=0.185 Sum_probs=46.5
Q ss_pred CCCccEEEEcCCccChhc----------cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076 24 DAVFDLIALPVCMPDATN----------LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG 81 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~----------~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g 81 (145)
..+||+|++|||+..-+. +..++.+.+-+++|.++++++.+||+|-+ +|.+.|||.+
T Consensus 1029 l~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ-~L~~lGLlP~ 1095 (1239)
T TIGR01857 1029 IDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQ-ALVKSGLLPY 1095 (1239)
T ss_pred cccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHH-HHHHcCCCcC
Confidence 358999999999742222 34567889999999999999999999877 7999999975
No 75
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.95 E-value=0.0018 Score=50.96 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=49.6
Q ss_pred CCEEeccccccC-CCCCCccEEEEcCCccC--hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 10 GVKIVADALVSD-CRDAVFDLIALPVCMPD--ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 10 G~~i~~d~~~~~-~~~~~~D~liipGG~~~--~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
|-.+.+=..+.| ..+++.|+|.||||++. ...|.+++.+++.|++++..|++|-+=|.| -+.|.+.
T Consensus 271 GAelv~FSPL~D~~lP~~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGG-lMYL~~~ 339 (451)
T COG1797 271 GAELVFFSPLADEELPPDVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGG-LMYLGES 339 (451)
T ss_pred CCEEEEeCCcCCCCCCCCCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEeccc-ceeehhh
Confidence 444444334444 23346999999999864 345778999999999999999999999996 5677764
No 76
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=96.92 E-value=0.0008 Score=43.68 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=33.0
Q ss_pred CCccEEEEcCCccC--hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 25 AVFDLIALPVCMPD--ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 25 ~~~D~liipGG~~~--~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
.++|.||+|||... +..+. ... .+.|+++.++++++.+||.| + .++
T Consensus 43 ~~ad~lVlPGGa~~~~~~~L~-~~g-~~~i~~~v~~g~p~LGIClG-A-y~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPYCRALN-GKG-NRRIRNFVRNGGNYLGICAG-A-YLA 90 (114)
T ss_pred hCCCEEEECCCChHHHHHHHH-hhC-cHHHHHHHHCCCcEEEEecC-c-cce
Confidence 37999999998422 22232 223 77888888999999999997 4 355
No 77
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=96.88 E-value=0.0017 Score=52.07 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=37.7
Q ss_pred CccEEEEcCCccChhc--cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 26 VFDLIALPVCMPDATN--LKESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 26 ~~D~liipGG~~~~~~--~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
++|+|++|||...... +..+..+.+.|+++.++|.+|.++|.|- .+|.+
T Consensus 284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~-q~Lg~ 334 (475)
T TIGR00313 284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGY-QMLGK 334 (475)
T ss_pred cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHH-HHhhh
Confidence 7899999999632222 2245567888999999999999999975 46877
No 78
>PRK07567 glutamine amidotransferase; Provisional
Probab=96.84 E-value=0.002 Score=47.29 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=34.3
Q ss_pred CCCccEEEEcCCccChhcc--ccCh---HH----HHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 24 DAVFDLIALPVCMPDATNL--KESK---VL----ETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~--~~~~---~l----~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
+++||.+||.||..+...- ...+ .+ .++++....++++|.+||-|.. +|+.+
T Consensus 49 ~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Q-lla~a 109 (242)
T PRK07567 49 LDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVG-TLGHH 109 (242)
T ss_pred HhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHH-HHHHH
Confidence 4589999999995333221 0122 22 3445555588999999999877 67765
No 79
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=96.82 E-value=0.0012 Score=45.50 Aligned_cols=58 Identities=17% Similarity=0.101 Sum_probs=39.2
Q ss_pred ccccccCCCCCCccEEEEcCCccC-hhccccChHHHHHHHHHHHCC-CeEEEEcchhHHHhhh
Q 045076 15 ADALVSDCRDAVFDLIALPVCMPD-ATNLKESKVLETIVKKQASNG-RLYAAVCASPAVALGS 75 (145)
Q Consensus 15 ~d~~~~~~~~~~~D~liipGG~~~-~~~~~~~~~l~~~l~~~~~~~-~~v~aic~g~~~~La~ 75 (145)
+-.+-.|+ .+.|+||||||... +..+.+-..+.+-|-++..++ +++.+.|+|.. +|.+
T Consensus 47 tVKT~~D~--aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI-~LS~ 106 (226)
T KOG3210|consen 47 TVKTKNDL--AQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMI-YLSQ 106 (226)
T ss_pred eecCHHHH--hhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhh-hhhh
Confidence 33344444 48999999999532 222334445888888888877 99999999743 4554
No 80
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0026 Score=45.12 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=46.7
Q ss_pred CCEEeccccccCCCCCCccEEEEcCCccC----hhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh---------c
Q 045076 10 GVKIVADALVSDCRDAVFDLIALPVCMPD----ATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS---------W 76 (145)
Q Consensus 10 G~~i~~d~~~~~~~~~~~D~liipGG~~~----~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~---------a 76 (145)
|..+......+++. ..|.||+||= +. +..+ +...+.+.|++....++++.+||-|.++++.. .
T Consensus 25 G~~~~vs~d~~~i~--~AD~liLPGV-Gaf~~am~~L-~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GL 100 (204)
T COG0118 25 GAEVVVSRDPEEIL--KADKLILPGV-GAFGAAMANL-RERGLIEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGL 100 (204)
T ss_pred CCeeEEecCHHHHh--hCCEEEecCC-CCHHHHHHHH-HhcchHHHHHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCc
Confidence 33444333444444 7999999994 22 2333 33478999999999999999999998864443 2
Q ss_pred cccCCc
Q 045076 77 GLLKGL 82 (145)
Q Consensus 77 gll~g~ 82 (145)
|+++|+
T Consensus 101 g~i~G~ 106 (204)
T COG0118 101 GLIPGK 106 (204)
T ss_pred ceecce
Confidence 666665
No 81
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=96.79 E-value=0.0028 Score=50.32 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=36.8
Q ss_pred CccEEEEcCCccCh--hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDA--TNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~--~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|+|++|||.+.. ..+..+... +-|+++.++|.+|.++|.|- .+|++.
T Consensus 274 ~~D~l~lpGG~~e~~~~~L~~n~~~-~~i~~~~~~G~pi~aeCGG~-q~L~~~ 324 (433)
T PRK13896 274 DCDGVYLPGGYPELHADALADSPAL-DELADRAADGLPVLGECGGL-MALAES 324 (433)
T ss_pred CCCEEEeCCCchhhHHHHHHhCCcH-HHHHHHHHCCCcEEEEehHH-HHhhcc
Confidence 78999999997432 223344445 78899999999999999964 467763
No 82
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=96.76 E-value=0.0031 Score=44.44 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=35.4
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||.|||.||...+. ..+.+.++|++ .++++++.+||-|.+ +|+.+
T Consensus 42 ~~~d~iIi~gGp~~~~---~~~~~~~~i~~-~~~~~PiLGIClG~Q-lla~~ 88 (190)
T PRK06895 42 ENFSHILISPGPDVPR---AYPQLFAMLER-YHQHKSILGVCLGHQ-TLCEF 88 (190)
T ss_pred ccCCEEEECCCCCChH---HhhHHHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 3799999998853222 24567888886 677899999999887 57765
No 83
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=96.62 E-value=0.0031 Score=48.75 Aligned_cols=47 Identities=19% Similarity=0.058 Sum_probs=35.4
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.++|.||++||..++. +.....++++++.++ +++.+||-|-+ +|+.+
T Consensus 207 ~~~DGIiLsgGPgdp~---~~~~~~~~i~~~~~~-~PvlGIClG~Q-lLa~a 253 (354)
T PRK12838 207 LNPDGIVLSNGPGDPK---ELQPYLPEIKKLISS-YPILGICLGHQ-LIALA 253 (354)
T ss_pred cCCCEEEEcCCCCChH---HhHHHHHHHHHHhcC-CCEEEECHHHH-HHHHH
Confidence 4799999999953433 344667788888776 99999999877 56654
No 84
>PRK00758 GMP synthase subunit A; Validated
Probab=96.62 E-value=0.0027 Score=44.49 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=31.1
Q ss_pred Cc-cEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VF-DLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~-D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++ |.||++||. ... ....+.+|++ +.+++|.+||-|-+ +|+.+
T Consensus 40 ~~~dgivi~Gg~-~~~---~~~~~~~~l~---~~~~PilGIC~G~Q-~L~~a 83 (184)
T PRK00758 40 AFEDGLILSGGP-DIE---RAGNCPEYLK---ELDVPILGICLGHQ-LIAKA 83 (184)
T ss_pred hcCCEEEECCCC-Chh---hccccHHHHH---hCCCCEEEEeHHHH-HHHHh
Confidence 67 999999994 332 2334566775 35799999999877 67765
No 85
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=96.53 E-value=0.0036 Score=44.13 Aligned_cols=53 Identities=11% Similarity=0.109 Sum_probs=36.9
Q ss_pred ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++++...++|.|||.||..++.+ .....++++++ .++++|.+||-|-+ +|+.+
T Consensus 36 ~~~~~~~~~d~iilsgGpg~p~~---~~~~~~~i~~~-~~~~PvLGIC~G~Q-ll~~~ 88 (188)
T TIGR00566 36 LQEIEALLPLLIVISPGPCTPNE---AGISLEAIRHF-AGKLPILGVCLGHQ-AMGQA 88 (188)
T ss_pred HHHHHhcCCCEEEEcCCCCChhh---cchhHHHHHHh-ccCCCEEEECHHHH-HHHHH
Confidence 44444346899999999544432 23347788877 67899999999877 57654
No 86
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=96.52 E-value=0.0069 Score=44.26 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=34.3
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV 71 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~ 71 (145)
.++|.|+++||. +.. ..+....+++...++++++.+||.|.+.
T Consensus 54 ~~~dgivl~GG~-~~~---~~~~~~~~i~~~~~~~~PvlGIClG~Q~ 96 (235)
T cd01746 54 KGADGILVPGGF-GIR---GVEGKILAIKYARENNIPFLGICLGMQL 96 (235)
T ss_pred ccCCEEEECCCC-CCc---chhhHHHHHHHHHHCCceEEEEEhHHHH
Confidence 579999999994 332 2346677888888999999999998764
No 87
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=96.52 E-value=0.0037 Score=48.43 Aligned_cols=46 Identities=15% Similarity=0.001 Sum_probs=35.0
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+|.|||+||...+. ..+..+++++++.+ +++|.+||-|-+ +|+.+
T Consensus 214 ~pDGIiLSgGPgdp~---~~~~~i~~i~~~~~-~~PILGIClG~Q-lLa~a 259 (358)
T TIGR01368 214 NPDGIFLSNGPGDPA---AVEPAIETIRKLLE-KIPIFGICLGHQ-LLALA 259 (358)
T ss_pred CCCEEEECCCCCCHH---HHHHHHHHHHHHHc-CCCEEEECHHHH-HHHHH
Confidence 469999999953433 34567788888876 899999999877 56654
No 88
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=96.49 E-value=0.0052 Score=54.61 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=46.7
Q ss_pred CCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcchhHHHhhhccccCCc
Q 045076 24 DAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCASPAVALGSWGLLKGL 82 (145)
Q Consensus 24 ~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~g~~~~La~agll~g~ 82 (145)
..+|+.|++|||+..- ..+..++.+.+-+++|. +.++++.+||+|-+ +|.+.|||.|.
T Consensus 1080 L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQ-iL~~lgllPg~ 1148 (1307)
T PLN03206 1080 LDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQ-LMALLGWVPGP 1148 (1307)
T ss_pred ccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHH-HHHHcCCCCCC
Confidence 4689999999996311 13456788999999998 55999999999877 79999999875
No 89
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=96.48 E-value=0.0074 Score=53.83 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=46.6
Q ss_pred CCCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcchhHHHhh-hccccCCc
Q 045076 23 RDAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCASPAVALG-SWGLLKGL 82 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~g~~~~La-~agll~g~ 82 (145)
..++|+.|++|||+..- ..+..++.+.+.+++|. ++++++.+||+|-+ +|. ..||+.|.
T Consensus 1097 ~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~~~gllp~~ 1167 (1310)
T TIGR01735 1097 HLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQ-MLSNLLEWIPGT 1167 (1310)
T ss_pred chhheeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHH-HHHHHhCcCCCC
Confidence 35689999999996311 11446788899999998 88999999999877 577 89999864
No 90
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=96.45 E-value=0.0029 Score=44.87 Aligned_cols=47 Identities=15% Similarity=0.209 Sum_probs=32.1
Q ss_pred CccEEEEcCCccChhc-c--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATN-L--KESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~-~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|.||+||+ ..... + .+...+.+.|++ ..++++.+||.|-+ +|++.
T Consensus 37 ~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~--~~g~PvlGIClGmQ-lL~~~ 86 (192)
T PRK13142 37 QAETIILPGV-GHFKDAMSEIKRLNLNAILAK--NTDKKMIGICLGMQ-LMYEH 86 (192)
T ss_pred cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH--hCCCeEEEECHHHH-HHhhh
Confidence 7999999998 33221 1 122236677776 56899999999877 56653
No 91
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=96.44 E-value=0.0044 Score=43.62 Aligned_cols=52 Identities=10% Similarity=0.070 Sum_probs=36.0
Q ss_pred cCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 20 SDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 20 ~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
+++...+||.||+.||..++.+ .....++++. ...+++|.+||-|-+ +|+.+
T Consensus 37 ~~~~~~~~d~iils~GPg~p~~---~~~~~~~~~~-~~~~~PiLGIClG~Q-~la~a 88 (187)
T PRK08007 37 ADIDALKPQKIVISPGPCTPDE---AGISLDVIRH-YAGRLPILGVCLGHQ-AMAQA 88 (187)
T ss_pred HHHHhcCCCEEEEcCCCCChHH---CCccHHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 3333346899999999545543 3445666666 457899999999876 57765
No 92
>PRK05637 anthranilate synthase component II; Provisional
Probab=96.26 E-value=0.0074 Score=43.30 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=35.2
Q ss_pred ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++++....||.|||.||..++.+ .....++++++. .+++|.+||-|.+ +|+.+
T Consensus 37 ~~~l~~~~~~~iIlsgGPg~~~d---~~~~~~li~~~~-~~~PiLGIClG~Q-lla~a 89 (208)
T PRK05637 37 VEEILAANPDLICLSPGPGHPRD---AGNMMALIDRTL-GQIPLLGICLGFQ-ALLEH 89 (208)
T ss_pred HHHHHhcCCCEEEEeCCCCCHHH---hhHHHHHHHHHh-CCCCEEEEcHHHH-HHHHH
Confidence 34443347899999888544432 223456665543 5799999999877 57765
No 93
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=96.20 E-value=0.0092 Score=46.63 Aligned_cols=53 Identities=19% Similarity=0.004 Sum_probs=37.3
Q ss_pred cCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 20 SDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 20 ~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
+++...++|.||++||.+.+. .....++.++++.+.+.+|.+||-|-. +|+.+
T Consensus 227 ~~i~~~~~dgIilSgGPg~p~---~~~~~i~~i~~~~~~~~PilGIClGhQ-lLa~a 279 (382)
T CHL00197 227 QDILSYQPDGILLSNGPGDPS---AIHYGIKTVKKLLKYNIPIFGICMGHQ-ILSLA 279 (382)
T ss_pred HHHhccCCCEEEEcCCCCChh---HHHHHHHHHHHHHhCCCCEEEEcHHHH-HHHHH
Confidence 333334789999999954443 234566777777777899999999877 56654
No 94
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=96.19 E-value=0.01 Score=43.84 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=36.6
Q ss_pred CCccEEEEcCCccChh-------------ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDAT-------------NLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~-------------~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
+.+|.|+++||..+.. .-.++...+++++.+.+++++|.+||-|-+ +|+.+
T Consensus 60 ~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Q-llnva 123 (254)
T PRK11366 60 PKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQ-ELVVA 123 (254)
T ss_pred HhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHH-HHHHH
Confidence 3599999999832221 011234567899999999999999999877 46654
No 95
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=96.17 E-value=0.015 Score=52.02 Aligned_cols=57 Identities=9% Similarity=0.041 Sum_probs=44.6
Q ss_pred CCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcchhHHHhhhcc-ccCC
Q 045076 24 DAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCASPAVALGSWG-LLKG 81 (145)
Q Consensus 24 ~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~g~~~~La~ag-ll~g 81 (145)
..+|++|++|||+..- ..+..|+.+.+-+++|. ++++++.+||+|-+ +|.+.| ++.+
T Consensus 1078 l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ-~L~~lg~l~p~ 1146 (1290)
T PRK05297 1078 LEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQ-MMSNLKEIIPG 1146 (1290)
T ss_pred hhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHH-HHHHhCCccCC
Confidence 4689999999996321 12345788899999976 78899999999877 799997 6655
No 96
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=96.16 E-value=0.0056 Score=43.96 Aligned_cols=48 Identities=21% Similarity=0.131 Sum_probs=36.0
Q ss_pred CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
.+.|+|++|||. ...+ .+.-.+.+.|++..+++++++++|.|. .++..
T Consensus 79 ~~ad~I~l~GG~--~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa-~i~~~ 129 (212)
T cd03146 79 LEADVIYVGGGN--TFNLLAQWREHGLDAILKAALERGVVYIGWSAGS-NCWFP 129 (212)
T ss_pred hcCCEEEECCch--HHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH-HhhCC
Confidence 479999999984 3222 223367788888888999999999974 46776
No 97
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=96.14 E-value=0.0093 Score=42.02 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=36.4
Q ss_pred ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++++...++|.||+.||..++.+ ......+++. .+++++|.+||-|-+ +|+.+
T Consensus 36 ~~~~~~~~~~~iilsgGP~~~~~---~~~~~~~i~~-~~~~~PiLGIC~G~Q-lla~~ 88 (191)
T PRK06774 36 LTDIEQLAPSHLVISPGPCTPNE---AGISLAVIRH-FADKLPILGVCLGHQ-ALGQA 88 (191)
T ss_pred HHHHHhcCCCeEEEcCCCCChHh---CCCchHHHHH-hcCCCCEEEECHHHH-HHHHH
Confidence 44444346899999999544433 3335566655 467899999999877 57765
No 98
>PRK05670 anthranilate synthase component II; Provisional
Probab=96.14 E-value=0.011 Score=41.50 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=33.3
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|.|||.||..++.+ .....++++++ .++++|.+||-|-+ +|+.+
T Consensus 43 ~~dglIlsgGpg~~~d---~~~~~~~l~~~-~~~~PvLGIClG~Q-lla~a 88 (189)
T PRK05670 43 NPDAIVLSPGPGTPAE---AGISLELIREF-AGKVPILGVCLGHQ-AIGEA 88 (189)
T ss_pred CCCEEEEcCCCCChHH---cchHHHHHHHh-cCCCCEEEECHHHH-HHHHH
Confidence 5899999888544432 23466777764 56799999999877 57764
No 99
>CHL00101 trpG anthranilate synthase component 2
Probab=96.09 E-value=0.0085 Score=42.25 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=32.2
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.++|.|||.||..++.+ .. +...+.+...+++++.+||-|-+ +|+.+
T Consensus 42 ~~~dgiiisgGpg~~~~---~~-~~~~i~~~~~~~~PiLGIClG~Q-lla~~ 88 (190)
T CHL00101 42 LNIRHIIISPGPGHPRD---SG-ISLDVISSYAPYIPILGVCLGHQ-SIGYL 88 (190)
T ss_pred CCCCEEEECCCCCChHH---Cc-chHHHHHHhcCCCcEEEEchhHH-HHHHH
Confidence 46999999999544432 22 23333345668899999999877 57764
No 100
>PRK06186 hypothetical protein; Validated
Probab=96.06 E-value=0.012 Score=42.84 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=35.5
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhH
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA 70 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~ 70 (145)
..++|.|+||||. +. +.-+--+..++.+.++++++.+||-|.+
T Consensus 51 l~~~dgilvpgGf-g~---rg~~Gki~ai~~Are~~iP~LGIClGmQ 93 (229)
T PRK06186 51 LAGFDGIWCVPGS-PY---RNDDGALTAIRFARENGIPFLGTCGGFQ 93 (229)
T ss_pred HhhCCeeEeCCCC-Cc---ccHhHHHHHHHHHHHcCCCeEeechhhH
Confidence 3478999999996 32 3456777889999999999999999866
No 101
>PLN02347 GMP synthetase
Probab=96.04 E-value=0.013 Score=47.76 Aligned_cols=58 Identities=7% Similarity=-0.002 Sum_probs=35.3
Q ss_pred ccccCCCCCCccEEEEcCCccChhccccChHHH-HHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 17 ALVSDCRDAVFDLIALPVCMPDATNLKESKVLE-TIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 17 ~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~-~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
...+++...++|.||++||..+.. ....+.+. .+++...+.+.+|.+||-|-+ +|+.+
T Consensus 44 ~~~~~i~~~~~dgIILsGGP~sv~-~~~~p~~~~~i~~~~~~~~iPILGIClG~Q-lLa~a 102 (536)
T PLN02347 44 ASLDRIASLNPRVVILSGGPHSVH-VEGAPTVPEGFFDYCRERGVPVLGICYGMQ-LIVQK 102 (536)
T ss_pred CCHHHHhcCCCCEEEECCCCCccc-ccCCchhhHHHHHHHHhcCCcEEEECHHHH-HHHHH
Confidence 344444333689999999943322 22223222 334444457899999999877 57765
No 102
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=95.96 E-value=0.017 Score=44.86 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=35.9
Q ss_pred CCccEEEEcCCccChhccc-cChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 25 AVFDLIALPVCMPDATNLK-ESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~-~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
.+++++|+|||. ...... -+..-.+.||+|.++|.-..+||+|+- ++.
T Consensus 48 ~~~~LlV~PGG~-d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY--~as 96 (367)
T PF09825_consen 48 SKCALLVMPGGA-DLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAY--YAS 96 (367)
T ss_pred cCCcEEEECCCc-chHHHHhhChHHHHHHHHHHHcCCcEEEECcchh--hhc
Confidence 479999999994 333222 256668889999999999999999743 554
No 103
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=95.95 E-value=0.013 Score=41.62 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=33.3
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+||.||+.||..++.+ .......++.+ ..++++.+||-|.+ +|+.+
T Consensus 42 ~~~d~iIlsgGP~~p~~---~~~~~~~i~~~-~~~~PvLGIClG~Q-lla~~ 88 (195)
T PRK07649 42 MKPDFLMISPGPCSPNE---AGISMEVIRYF-AGKIPIFGVCLGHQ-SIAQV 88 (195)
T ss_pred CCCCEEEECCCCCChHh---CCCchHHHHHh-cCCCCEEEEcHHHH-HHHHH
Confidence 46999999999545443 23355566654 47899999999877 57765
No 104
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=95.91 E-value=0.019 Score=40.07 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=31.9
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+||.+|+.||..++. ++. ....+++...+++++.+||-|-. +|+.+
T Consensus 41 ~~~dgvil~gG~~~~~---~~~-~~~~i~~~~~~~~PvlGIC~G~Q-lla~~ 87 (184)
T cd01743 41 LNPDAIVISPGPGHPE---DAG-ISLEIIRALAGKVPILGVCLGHQ-AIAEA 87 (184)
T ss_pred cCCCEEEECCCCCCcc---cch-hHHHHHHHHhcCCCEEEECHhHH-HHHHH
Confidence 5799999988743321 222 34445555667899999999876 57765
No 105
>PHA03366 FGAM-synthase; Provisional
Probab=95.85 E-value=0.019 Score=51.35 Aligned_cols=56 Identities=5% Similarity=-0.072 Sum_probs=45.9
Q ss_pred CCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcc-hhHHHhhhccccC
Q 045076 24 DAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCA-SPAVALGSWGLLK 80 (145)
Q Consensus 24 ~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~-g~~~~La~agll~ 80 (145)
.++|+.|++|||+... ..+..|+.+.+.+++|. ++++.+.+||+ |-+ +|.+.|++.
T Consensus 1070 l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q-~L~~lgll~ 1137 (1304)
T PHA03366 1070 LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQ-ILFALKAVG 1137 (1304)
T ss_pred cccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHH-HHHHcCCcc
Confidence 5689999999997421 22447889999999998 56999999999 987 799999994
No 106
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=95.85 E-value=0.013 Score=42.77 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=36.5
Q ss_pred CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
.+.|+|+|+||. ...+ .+.-.+.+.|+++.++|+++++.|+| +.+++.
T Consensus 78 ~~ad~I~v~GGn--t~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAG-Aii~~~ 128 (233)
T PRK05282 78 ENAEAIFVGGGN--TFQLLKQLYERGLLAPIREAVKNGTPYIGWSAG-ANVAGP 128 (233)
T ss_pred hcCCEEEECCcc--HHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHH-HHhhhc
Confidence 478999999994 3332 34456788889999999999999996 545555
No 107
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=95.76 E-value=0.016 Score=46.62 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=31.5
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.++|.||+|||. ....-.-...+.+.|+++ +++|.+||.|-+ +|++.
T Consensus 35 ~~~D~lILPGG~-~~~~~~l~~~l~~~i~~~---g~pvlGICgG~Q-mLg~~ 81 (476)
T PRK06278 35 KDLDGLIIPGGS-LVESGSLTDELKKEILNF---DGYIIGICSGFQ-ILSEK 81 (476)
T ss_pred ccCCEEEECCCc-hhhcchHHHHHHHHHHHc---CCeEEEEcHHHH-hcccc
Confidence 379999999983 111100024555666555 899999999877 57765
No 108
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=95.60 E-value=0.022 Score=40.20 Aligned_cols=46 Identities=7% Similarity=0.011 Sum_probs=33.2
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|.+++-||..++.+ +....++++. .+++.+|.+||-|.. +|+.+
T Consensus 43 ~~~~iilsgGp~~~~~---~~~~~~~i~~-~~~~~PiLGIClG~Q-lia~a 88 (193)
T PRK08857 43 NPTHLVISPGPCTPNE---AGISLQAIEH-FAGKLPILGVCLGHQ-AIAQV 88 (193)
T ss_pred CCCEEEEeCCCCChHH---CcchHHHHHH-hcCCCCEEEEcHHHH-HHHHH
Confidence 5899999998544432 3344667766 467899999999877 57764
No 109
>PRK13566 anthranilate synthase; Provisional
Probab=95.56 E-value=0.03 Score=47.30 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=36.4
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.++|.|||.||...+. +..+.+++++..+++++|.+||-|-. +|+.+
T Consensus 568 ~~~DgVVLsgGpgsp~----d~~~~~lI~~a~~~~iPILGIClG~Q-lLa~a 614 (720)
T PRK13566 568 VNPDLVVLSPGPGRPS----DFDCKATIDAALARNLPIFGVCLGLQ-AIVEA 614 (720)
T ss_pred cCCCEEEECCCCCChh----hCCcHHHHHHHHHCCCcEEEEehhHH-HHHHH
Confidence 4789999977743332 33478999999999999999999877 57664
No 110
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=95.50 E-value=0.042 Score=48.89 Aligned_cols=56 Identities=5% Similarity=-0.072 Sum_probs=45.3
Q ss_pred CCCccEEEEcCCccCh----------hccccChHHHHHHHHHH-HCCCeEEEEcc-hhHHHhhhccccC
Q 045076 24 DAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQA-SNGRLYAAVCA-SPAVALGSWGLLK 80 (145)
Q Consensus 24 ~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~-~~~~~v~aic~-g~~~~La~agll~ 80 (145)
.++|+.|++|||.... ..+..++.+.+.+++|. +.++.+.+||+ |-+ +|.+.|++.
T Consensus 971 l~~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q-~L~~lg~l~ 1038 (1202)
T TIGR01739 971 LDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQ-LLLALNIVG 1038 (1202)
T ss_pred hhheEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHH-HHHHcCCCc
Confidence 3589999999996422 22446889999999998 55999999999 988 799999984
No 111
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=95.49 E-value=0.026 Score=44.57 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=37.0
Q ss_pred ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+++...++|.||+.||...+. ..+...+.++++. .+.+|.+||-|-+ +|+.+
T Consensus 274 ~~ei~~~~pDGIiLSnGPGDP~---~~~~~ie~ik~l~-~~iPIlGICLGhQ-lLa~A 326 (415)
T PLN02771 274 ASEALKMKPDGVLFSNGPGDPS---AVPYAVETVKELL-GKVPVFGICMGHQ-LLGQA 326 (415)
T ss_pred HHHHhhcCCCEEEEcCCCCChh---HhhHHHHHHHHHH-hCCCEEEEcHHHH-HHHHh
Confidence 3344334799999999954443 3355667777765 4789999999877 57765
No 112
>PRK05380 pyrG CTP synthetase; Validated
Probab=95.47 E-value=0.032 Score=45.33 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=34.1
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV 71 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~ 71 (145)
..+|.|++|||+ +.. ..+..+.+++.+.++++++.+||-|-++
T Consensus 342 ~~~DGIIlpGGf-G~~---~~~g~i~~i~~a~e~~iPiLGIClGmQl 384 (533)
T PRK05380 342 KGVDGILVPGGF-GER---GIEGKILAIRYARENNIPFLGICLGMQL 384 (533)
T ss_pred hcCCEEEecCCC-Ccc---ccccHHHHHHHHHHCCCcEEEEchHHHH
Confidence 479999999996 332 2345678888888999999999998763
No 113
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=95.12 E-value=0.044 Score=46.25 Aligned_cols=47 Identities=13% Similarity=0.057 Sum_probs=36.0
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+||.|||.||..++. +....+++++..+.+++|.+||-|.+ +|+.+
T Consensus 558 ~~~DgLILsgGPGsp~----d~~~~~~I~~~~~~~iPvLGICLG~Q-lLa~a 604 (717)
T TIGR01815 558 RRPDLVVLSPGPGRPA----DFDVAGTIDAALARGLPVFGVCLGLQ-GMVEA 604 (717)
T ss_pred cCCCEEEEcCCCCCch----hcccHHHHHHHHHCCCCEEEECHHHH-HHhhh
Confidence 4699999988743333 33557788888889999999999877 57765
No 114
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=95.11 E-value=0.051 Score=40.61 Aligned_cols=50 Identities=14% Similarity=0.060 Sum_probs=29.9
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHH---HHCC--CeEEEEcchhHHHhhh
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQ---ASNG--RLYAAVCASPAVALGS 75 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~---~~~~--~~v~aic~g~~~~La~ 75 (145)
+.+|.|++|||..........+....+++.. .++| .+|.++|-|-. +|+.
T Consensus 53 ~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~Q-lL~~ 107 (273)
T cd01747 53 KSINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFE-LLTY 107 (273)
T ss_pred hhCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHH-HHHH
Confidence 4789999999942322111223334444444 3444 79999999866 4554
No 115
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=94.74 E-value=0.062 Score=38.78 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=36.3
Q ss_pred CCCCccEEEEcCCccChhc-c-ccC-hHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 23 RDAVFDLIALPVCMPDATN-L-KES-KVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~-~-~~~-~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
+.+.||++|+-||. .-++ + .++ ....+-|+.+..+++++.+||.|.. +|.+
T Consensus 49 ~~~~~Dl~~~GGgq-D~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~Q-lLG~ 102 (250)
T COG3442 49 PDDSYDLYFLGGGQ-DYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQ-LLGQ 102 (250)
T ss_pred CcccccEEEecCch-HHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchh-hccc
Confidence 33489999987774 3222 1 223 3445678888999999999999887 6886
No 116
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=94.69 E-value=0.042 Score=42.30 Aligned_cols=59 Identities=15% Similarity=-0.001 Sum_probs=44.8
Q ss_pred eccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 14 VADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 14 ~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
..+.+.+++...++|.||+.-|.+++. .-+..++.++++....+++.+||-|=+ +|+.|
T Consensus 208 P~~t~~eeIl~~~pDGiflSNGPGDP~---~~~~~i~~ik~l~~~~iPifGICLGHQ-llalA 266 (368)
T COG0505 208 PADTSAEEILALNPDGIFLSNGPGDPA---PLDYAIETIKELLGTKIPIFGICLGHQ-LLALA 266 (368)
T ss_pred cCCCCHHHHHhhCCCEEEEeCCCCChh---HHHHHHHHHHHHhccCCCeEEEcHHHH-HHHHh
Confidence 445556665445899999999965553 456788889999988889999999766 67765
No 117
>PLN02335 anthranilate synthase
Probab=94.61 E-value=0.057 Score=39.08 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=31.9
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+||.|||.||..++.+ .....+++++ ....++|.+||-|-. +|+.+
T Consensus 61 ~~~d~iVisgGPg~p~d---~~~~~~~~~~-~~~~~PiLGIClG~Q-lLa~a 107 (222)
T PLN02335 61 KNPRGVLISPGPGTPQD---SGISLQTVLE-LGPLVPLFGVCMGLQ-CIGEA 107 (222)
T ss_pred cCCCEEEEcCCCCChhh---ccchHHHHHH-hCCCCCEEEecHHHH-HHHHH
Confidence 35899999999544543 2234555554 345699999999877 56654
No 118
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=94.54 E-value=0.11 Score=39.53 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=34.6
Q ss_pred cccCCCCCCccEEEEcCCccChhccccC---hHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATNLKES---KVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~~~~~---~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
.++++....||++||.|.........+. +++.++++...++.+.+..||-|..+ ++
T Consensus 91 ~~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa-~a 149 (302)
T PRK05368 91 TFEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQA-AL 149 (302)
T ss_pred CHHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHH-HH
Confidence 3455555689999999984221111111 23555555555668999999997664 44
No 119
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=94.43 E-value=0.032 Score=38.96 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=36.9
Q ss_pred cccCCCCCCccEEEEcCCccChhccccCh-----HHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATNLKESK-----VLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~~~~~~-----~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
.++++....||.+||.|.. .+.+.-.+ ++.+.+....++...+..+|-|....|.
T Consensus 54 ~~~~i~~~~yDGlIITGAp--ve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~ 113 (175)
T cd03131 54 TFDDIRDAKFDGLIVTGAP--VEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALY 113 (175)
T ss_pred CHHHccccCCCEEEEeCCC--cccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 3445556789999999973 43333233 5666666666788999999997554333
No 120
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=94.09 E-value=0.1 Score=42.39 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=32.2
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV 71 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~ 71 (145)
.++|.|++|||. +.. ..+..+..++.+.+++.++.+||-|-++
T Consensus 342 ~~~dGIiLpGG~-G~~---~~~g~i~ai~~a~e~~iP~LGIClG~Ql 384 (525)
T TIGR00337 342 KGVDGILVPGGF-GER---GVEGKILAIKYARENNIPFLGICLGMQL 384 (525)
T ss_pred cCCCEEEeCCCC-CCh---hhcChHHHHHHHHHcCCCEEEEcHHHHH
Confidence 468999999995 332 2344556777777889999999998663
No 121
>PLN02327 CTP synthase
Probab=94.01 E-value=0.11 Score=42.43 Aligned_cols=44 Identities=16% Similarity=0.063 Sum_probs=32.6
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV 71 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~ 71 (145)
..++|.|++|||. +.. ..+..+..++.+.++++++.+||-|-++
T Consensus 360 L~~~DGIvvpGGf-G~~---~~~G~i~ai~~are~~iP~LGIClGmQl 403 (557)
T PLN02327 360 LKGADGILVPGGF-GDR---GVEGKILAAKYARENKVPYLGICLGMQI 403 (557)
T ss_pred hccCCEEEeCCCC-CCc---ccccHHHHHHHHHHcCCCEEEEcHHHHH
Confidence 3479999999995 332 2234456677777899999999998664
No 122
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=93.76 E-value=0.054 Score=36.81 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=34.4
Q ss_pred CccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
+.|+|++.||. +..+ ..+..+.+.|++..++|.++++..+| +.++...
T Consensus 35 ~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAG-A~i~~~~ 85 (154)
T PF03575_consen 35 EADAIFLGGGD--TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAG-AMILGPS 85 (154)
T ss_dssp HSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHH-HHCTSSB
T ss_pred hCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChH-HhhccCc
Confidence 68999999994 3332 34567889999999999999999985 6555443
No 123
>PRK00074 guaA GMP synthase; Reviewed
Probab=93.61 E-value=0.093 Score=42.67 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=30.1
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|.||+|||..+... ...+.+. +...+.+++|.+||-|-+ +|+.+
T Consensus 46 ~~dgIIlsGGp~sv~~-~~~p~~~---~~i~~~~~PvLGIC~G~Q-lLa~~ 91 (511)
T PRK00074 46 NPKGIILSGGPASVYE-EGAPRAD---PEIFELGVPVLGICYGMQ-LMAHQ 91 (511)
T ss_pred CCCEEEECCCCccccc-CCCcccc---HHHHhCCCCEEEECHHHH-HHHHH
Confidence 4699999999533222 1223332 344567899999999877 57664
No 124
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=93.46 E-value=0.21 Score=36.54 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=36.0
Q ss_pred CCccEEEEcCCccChhc---------------cccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 25 AVFDLIALPVCMPDATN---------------LKESKVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~---------------~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
+..|.|+++||. +... ..+|.--+.+|+.+-+++++|.+||=|..+ |-
T Consensus 59 ~~iDgliltGg~-nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~Ql-lN 121 (243)
T COG2071 59 DLIDGLILTGGS-NVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQL-LN 121 (243)
T ss_pred hhccEEEecCCC-cCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHH-HH
Confidence 468999999993 3211 124455778999999999999999998774 44
No 125
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=93.32 E-value=0.094 Score=37.80 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=27.2
Q ss_pred CCccEEEEcCCccChh--c-------------cccChHHHHHHHHHHHCCCeEEEEcchhHHH
Q 045076 25 AVFDLIALPVCMPDAT--N-------------LKESKVLETIVKKQASNGRLYAAVCASPAVA 72 (145)
Q Consensus 25 ~~~D~liipGG~~~~~--~-------------~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~ 72 (145)
+..|.|++|||..+.. . ..++.--+.+++.+.+++++|.+||-|-.++
T Consensus 57 ~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~l 119 (217)
T PF07722_consen 57 DRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLL 119 (217)
T ss_dssp HCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHH
T ss_pred hhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHH
Confidence 4789999999952221 0 0122234466677778999999999987743
No 126
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=93.25 E-value=0.095 Score=42.84 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=36.1
Q ss_pred ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++++...++|.||+.||..++.+ +....++++.+ ..+.+|.+||-|-. +|+.+
T Consensus 37 ~~~~~~~~~d~vIlsgGP~~p~~---~~~~~~li~~~-~~~~PvLGIClG~Q-lLa~a 89 (534)
T PRK14607 37 IEEIEALNPSHIVISPGPGRPEE---AGISVEVIRHF-SGKVPILGVCLGHQ-AIGYA 89 (534)
T ss_pred HHHHHhcCCCEEEECCCCCChhh---CCccHHHHHHh-hcCCCEEEEcHHHH-HHHHH
Confidence 34443346899999999644443 23345677664 57899999999877 57764
No 127
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=92.70 E-value=0.17 Score=36.15 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=33.4
Q ss_pred CCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+.|+|+++||. ...+ .....+.+.|++..++|.++++.|+| +.++...
T Consensus 79 ~~ad~I~~~GG~--~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAG-A~~~~~~ 130 (210)
T cd03129 79 LEADGIFVGGGN--QLRLLSVLRETPLLDAILKRVARGVVIGGTSAG-AAVMGET 130 (210)
T ss_pred hhCCEEEEcCCc--HHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHH-HHHhhhc
Confidence 479999999994 3222 22333555555556699999999996 5577763
No 128
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=92.30 E-value=0.24 Score=42.11 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=30.3
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHC----CCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASN----GRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~----~~~v~aic~g~~~~La~a 76 (145)
..||.|||.||.+.+. ++.-..++++..+. ..+|.+||-|-+ +|+.+
T Consensus 52 ~~~D~VVIspGPG~p~----~~~~~~i~~~i~~~~~~~~iPvLGIClG~Q-lLa~a 102 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPN----NAQDMGIISELWELANLDEVPVLGICLGFQ-SLCLA 102 (742)
T ss_pred cCCCEEEECCCCCCcc----chhhhHHHHHHHHhcccCCCcEEEEchhhH-HHHhh
Confidence 4799999999854332 22223344444433 599999999877 56654
No 129
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=92.22 E-value=0.2 Score=40.96 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=30.3
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++|.|||.||...+.+....+ +++++ ...+++|.+||-|-+ +|+.+
T Consensus 48 ~~~~IIlSpGPg~p~d~~~~~---~i~~~-~~~~iPILGIClG~Q-lLa~a 93 (531)
T PRK09522 48 SNPVLMLSPGPGVPSEAGCMP---ELLTR-LRGKLPIIGICLGHQ-AIVEA 93 (531)
T ss_pred CcCEEEEcCCCCChhhCCCCH---HHHHH-HhcCCCEEEEcHHHH-HHHHh
Confidence 578999999964554332222 33332 346899999999877 57764
No 130
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=91.91 E-value=0.56 Score=40.85 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=34.6
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
++||.||+..|.+++.. -+.+..-+++....+++|++||.| -.+||.+
T Consensus 209 ~~yDGlflSNGPGdPe~---~~~~v~~vr~lL~~~~PvfGIClG-HQllA~A 256 (1435)
T KOG0370|consen 209 EEYDGLFLSNGPGDPEL---CPLLVQNVRELLESNVPVFGICLG-HQLLALA 256 (1435)
T ss_pred cccceEEEeCCCCCchh---hHHHHHHHHHHHhCCCCeEEEehh-hHHHHHh
Confidence 38999999999644432 345555566666667999999996 4578865
No 131
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=91.43 E-value=0.48 Score=38.22 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=32.5
Q ss_pred ccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhH
Q 045076 27 FDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA 70 (145)
Q Consensus 27 ~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~ 70 (145)
+|.|+||||+ +. +.-+--+.-++.+..++.+..+||-|-+
T Consensus 344 ~dgIlVPGGF-G~---RG~eGkI~Ai~yAREn~iP~lGIClGmQ 383 (533)
T COG0504 344 VDGILVPGGF-GY---RGVEGKIAAIRYARENNIPFLGICLGMQ 383 (533)
T ss_pred CCEEEeCCCC-Cc---CchHHHHHHHHHHHhcCCCEEEEchhHH
Confidence 8999999996 43 3456667777888889999999999865
No 132
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=91.18 E-value=0.63 Score=32.94 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=39.6
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc---------cccCCcee
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW---------GLLKGLKA 84 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a---------gll~g~~~ 84 (145)
...++|.|+|.=|.+.+. +.....+.|+++ .+..+|.+||-|=+ .++.+ .+..||.-
T Consensus 42 ~~~~pd~iviSPGPG~P~---d~G~~~~~i~~~-~~~~PiLGVCLGHQ-ai~~~fGg~V~~a~~~~HGK~s 107 (191)
T COG0512 42 EALKPDAIVISPGPGTPK---DAGISLELIRRF-AGRIPILGVCLGHQ-AIAEAFGGKVVRAKEPMHGKTS 107 (191)
T ss_pred hhcCCCEEEEcCCCCChH---HcchHHHHHHHh-cCCCCEEEECccHH-HHHHHhCCEEEecCCCcCCeee
Confidence 334689999977743343 455678888888 66789999999765 56653 35666654
No 133
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=91.17 E-value=0.39 Score=34.61 Aligned_cols=48 Identities=15% Similarity=0.030 Sum_probs=36.5
Q ss_pred CCccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 25 AVFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
.+.|+|++.||. ... ......+.+.|++..++|.++++..+| +.++..
T Consensus 82 ~~ad~I~~~GG~--~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAG-A~i~~~ 132 (217)
T cd03145 82 RDADGIFFTGGD--QLRITSALGGTPLLDALRKVYRGGVVIGGTSAG-AAVMSD 132 (217)
T ss_pred HhCCEEEEeCCc--HHHHHHHHcCChHHHHHHHHHHcCCEEEEccHH-HHhhhh
Confidence 478999999994 322 234567888999999999999999996 546554
No 134
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=90.34 E-value=0.64 Score=33.35 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=36.5
Q ss_pred CCCccEEEEcCCccChhccccC---hHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 24 DAVFDLIALPVCMPDATNLKES---KVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~---~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.+.||.++|.|....+ ..+. -.|..++++.....+.|.+||-|=. ++|++
T Consensus 57 l~ky~gfvIsGS~~dA--f~d~dWI~KLcs~~kkld~mkkkvlGICFGHQ-iiara 109 (245)
T KOG3179|consen 57 LEKYDGFVISGSKHDA--FSDADWIKKLCSFVKKLDFMKKKVLGICFGHQ-IIARA 109 (245)
T ss_pred hhhhceEEEeCCcccc--cccchHHHHHHHHHHHHHhhccceEEEeccHH-HHHHh
Confidence 4589999999974322 2222 3577888888888899999999766 67765
No 135
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=88.34 E-value=1.2 Score=34.54 Aligned_cols=62 Identities=13% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCEEeccccccCCCCCCccEEEEcCCccCh---hccccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 10 GVKIVADALVSDCRDAVFDLIALPVCMPDA---TNLKESKVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 10 G~~i~~d~~~~~~~~~~~D~liipGG~~~~---~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
|+.+.--.+-.|+. .-|-||+||- ++. .+.....-+.+-|+++..+++++.+||-|-..++.
T Consensus 25 g~~i~~v~~P~DI~--~a~rLIfPGV-Gnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~ 89 (541)
T KOG0623|consen 25 GFSIKDVQTPGDIL--NADRLIFPGV-GNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFD 89 (541)
T ss_pred CceeeeccCchhhc--cCceEeecCc-ccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhc
Confidence 45554444444544 6789999994 221 22345567788889999999999999998765544
No 136
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=88.21 E-value=0.29 Score=33.46 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=30.0
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+.++||.||| |.+-+ ...-.+.+..||++..-+||.|+.+|+
T Consensus 70 d~~~YD~I~l--G~PvW-~~~~~~pv~tFL~~~~~~gK~v~~F~T 111 (156)
T PF12682_consen 70 DLSDYDTIFL--GTPVW-WGTPPPPVRTFLEQYDFSGKTVIPFCT 111 (156)
T ss_dssp -GGG-SEEEE--EEEEE-TTEE-CHHHHHHHCTTTTTSEEEEEEE
T ss_pred CcccCCEEEE--echHH-cCCCCHHHHHHHHhcCCCCCcEEEEEe
Confidence 4468999998 33433 334577999999998888999999886
No 137
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=87.84 E-value=1.4 Score=35.61 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=32.4
Q ss_pred CccEEEEcCCccChhcc--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 26 VFDLIALPVCMPDATNL--KESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
+.|++|+||-.....++ .+..-+-+-+.++.+++..|.+||.|-+ +|.+
T Consensus 290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~Q-mLG~ 340 (486)
T COG1492 290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQ-MLGR 340 (486)
T ss_pred CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHH-hhhh
Confidence 58999999984222222 1222333455566677899999999876 5775
No 138
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=87.59 E-value=0.85 Score=33.68 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=36.5
Q ss_pred CCccEEEEcCCccChhc---cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 25 AVFDLIALPVCMPDATN---LKESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~---~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
.+.|+|++.||. ..+ ....-.+.+.|++.+++|.++++..+| +.+++.
T Consensus 81 ~~ad~I~~~GGn--q~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAG-A~i~~~ 131 (250)
T TIGR02069 81 SNATGIFFTGGD--QLRITSLLGDTPLLDRLRKRVHEGIILGGTSAG-AAVMSD 131 (250)
T ss_pred hhCCEEEEeCCC--HHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHH-HHhccc
Confidence 478999999994 322 235667888899999999999999996 445653
No 139
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.27 E-value=2.8 Score=27.87 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=40.6
Q ss_pred ecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccc
Q 045076 7 ACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGL 78 (145)
Q Consensus 7 ~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agl 78 (145)
+.+|+.+- .+++. +..|++++-||.+-+..=...+...+++.+. .++.+.++|- -. +..++|.
T Consensus 71 ~d~G~ql~---e~e~~--n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~--~~kkliGvCf-m~-mF~ragW 133 (154)
T COG4090 71 TDHGYQLG---EREEL--NSADVVVLLGGLAMPKIGVTPDDAKELLEEL--GNKKLIGVCF-MN-MFERAGW 133 (154)
T ss_pred eccceecC---Ccccc--ccccEEEEEcccccCcCCCCHHHHHHHHHhc--CCCceEEeeH-HH-HHHHcCc
Confidence 44565551 22333 3589999999974333323456788888744 3567999998 45 5788875
No 140
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=86.44 E-value=0.29 Score=33.09 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=35.6
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccC
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~ 80 (145)
+.|++++-||.+-+..=...+.+.+++.+..+.. |.++|- -. ++.++|..+
T Consensus 80 ~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~--iiGiCF-ms-~F~kagW~~ 130 (147)
T PF09897_consen 80 HPDVVVLMGGLAMPKSGVTPEDVNELIKKISPKK--IIGICF-MS-MFEKAGWDD 130 (147)
T ss_dssp -EEEEEEEGGGGSTTTS--HHHHHHHHHHHEEEE--EEEEEE-TT-HHHHTTHHH
T ss_pred CCCEEEEEcccccCCCCCCHHHHHHHHHHhCcCC--EEEEeh-HH-HHHHcCCcc
Confidence 4899999999754433345567888888887554 999998 34 578887644
No 141
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=84.92 E-value=1.6 Score=30.11 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=35.9
Q ss_pred ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHH--CCCeEEEEcch
Q 045076 19 VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQAS--NGRLYAAVCAS 68 (145)
Q Consensus 19 ~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~--~~~~v~aic~g 68 (145)
..+.++++||.++|.. +......++.+.+|++++.. +.++.+.+|.+
T Consensus 40 ~~~~~l~~ydavVIgA---sI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~vn 88 (175)
T COG4635 40 VEEPALEDYDAVVIGA---SIRYGHFHEAVQSFVKKHAEALSTKPSAFFSVN 88 (175)
T ss_pred hhccChhhCceEEEec---chhhhhhHHHHHHHHHHHHHHHhcCCceEEEee
Confidence 3334567999999933 35555678899999999876 68999999984
No 142
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=84.63 E-value=1.9 Score=37.67 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=30.6
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSW 76 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~a 76 (145)
.||.|||.+|.+.+....+-....++|.++ .+.+|.+||-|-+ +|+.+
T Consensus 131 ~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ-~i~~~ 178 (918)
T PLN02889 131 AFDNIVISPGPGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQ-ALGYV 178 (918)
T ss_pred CCCEEEECCCCCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHH-HHHHh
Confidence 689999999954333211112234555543 4699999999866 46653
No 143
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=83.14 E-value=2.7 Score=30.50 Aligned_cols=45 Identities=16% Similarity=0.199 Sum_probs=32.1
Q ss_pred CccEEEEcCCccChhcc-ccChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076 26 VFDLIALPVCMPDATNL-KESKVLETIVKKQASNGRLYAAVCASPAV 71 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~-~~~~~l~~~l~~~~~~~~~v~aic~g~~~ 71 (145)
.--+|++||| ++.... .-++..-+.+..+.++|....+||+|+-|
T Consensus 49 ~T~lLV~pGG-aDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~YF 94 (253)
T COG4285 49 TTLLLVFPGG-ADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGGYF 94 (253)
T ss_pred ceEEEEecCC-CCchHHHHhcchhhhhHHHHHhcCCeEEEEeccccc
Confidence 4568899999 443322 22445557778888999999999998643
No 144
>PRK06934 flavodoxin; Provisional
Probab=82.86 E-value=1.6 Score=31.77 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=32.9
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
.++||.||| |++-+. -.-.+.+..||.+..-.+|.|+.+|+.
T Consensus 127 l~~YD~I~I--G~PIWw-g~~P~~V~tFLe~~d~~GK~I~pF~T~ 168 (221)
T PRK06934 127 LADYDQIFI--GYPIWW-YKMPMVMYSFFEQHDFSGKTLIPFTTH 168 (221)
T ss_pred HHhCCEEEE--Ecchhh-ccccHHHHHHHHhcCCCCCEEEEEEec
Confidence 358999998 434443 345788999999998899999999973
No 145
>PF01058 Oxidored_q6: NADH ubiquinone oxidoreductase, 20 Kd subunit; InterPro: IPR006137 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 20 kDa (in mammals) [], which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 4Fe-4S iron-sulphur cluster. The 20 kDa subunit has been found to be nuclear encoded, as a precursor form with a transit peptide in mammals, and in Neurospora crassa. It is and chloroplast encoded in various higher plants (gene ndhK or psbG).; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0048038 quinone binding, 0051539 4 iron, 4 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 3MYR_E 3RGW_S 2FUG_F 3IAS_6 3I9V_F 3IAM_F 2YBB_6 3M9S_F 2FRV_G 1YQ9_B ....
Probab=81.95 E-value=1.9 Score=28.49 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.+.|++||-|... .++....++++++.++.++|.|+++
T Consensus 44 ~~~diliVeG~v~-----~~~~~~~e~~~~~~~~a~~vIAvGt 81 (131)
T PF01058_consen 44 EEADILIVEGSVP-----RNMEEALEWLKELRPKAKAVIAVGT 81 (131)
T ss_dssp TTTEEEEEESBEE-----TGGEEHHHHHHHHHGCSSEEEEEHH
T ss_pred cCceEEEEEeecc-----CCchHHHHHHHHHccCCceeEcCCC
Confidence 3789999999742 1347889999999999999999987
No 146
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=81.89 E-value=1.7 Score=31.45 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=35.3
Q ss_pred CccEEEEcCCccChhccc---cChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 26 VFDLIALPVCMPDATNLK---ESKVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~---~~~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
+-|+|+|.|| +...+. +.-.+.+.|++..++|.+.++..+| + +++
T Consensus 84 ~~d~IyVgGG--NTF~LL~~lke~gld~iIr~~vk~G~~YiG~SAG-A-~ia 131 (224)
T COG3340 84 KADIIYVGGG--NTFNLLQELKETGLDDIIRERVKAGTPYIGWSAG-A-NIA 131 (224)
T ss_pred hccEEEECCc--hHHHHHHHHHHhCcHHHHHHHHHcCCceEEeccC-c-eee
Confidence 5899999887 455543 4567889999999999999999996 5 344
No 147
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=81.54 E-value=0.35 Score=28.95 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=29.9
Q ss_pred cccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCce
Q 045076 42 LKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLK 83 (145)
Q Consensus 42 ~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~ 83 (145)
+..++.+..+-+.|.+.+..-++.|+ |.++++...+|+..+
T Consensus 5 l~~~~~~~~iq~af~~~~a~QCGfCt-pG~im~~~~ll~~~~ 45 (75)
T PF01799_consen 5 LASDGELHPIQQAFVEHGAVQCGFCT-PGMIMAAYALLRRNP 45 (75)
T ss_dssp SSBTTB--HHHHHHHHTT--SSSSSH-HHHHHHHHHHHHHSS
T ss_pred CCCCCCcCHHHHHHHHhCCCcCCcch-HHHHHHHHHHhhccc
Confidence 34567777888888899999999999 668999999998544
No 148
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=80.50 E-value=3.6 Score=33.05 Aligned_cols=41 Identities=15% Similarity=0.070 Sum_probs=31.0
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhH
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA 70 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~ 70 (145)
..|.|+||||++ . +--+-.+.-.+.+.+++.+..+||-|-+
T Consensus 363 ~adGilvPGGFG-~---RGveG~i~Aak~ARen~iP~LGiCLGmQ 403 (585)
T KOG2387|consen 363 SADGILVPGGFG-D---RGVEGKILAAKWARENKIPFLGICLGMQ 403 (585)
T ss_pred cCCeEEeCCccc-c---cchhHHHHHHHHHHhcCCCeEeeehhhh
Confidence 479999999973 3 2344555666777889999999999754
No 149
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=78.47 E-value=6.4 Score=26.37 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=28.5
Q ss_pred CCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 22 CRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 22 ~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.+.++|++||+|.-. ..++...+.|+++.++|..+.+-+.
T Consensus 49 ~~l~~y~~vi~P~~~------~~~~~~~~~l~~~v~~GG~li~~~~ 88 (154)
T cd03143 49 ADLSGYKLVVLPDLY------LLSDATAAALRAYVENGGTLVAGPR 88 (154)
T ss_pred CCcccCCEEEECchh------cCCHHHHHHHHHHHHCCCEEEEecC
Confidence 344589999999873 2356888888998888875555443
No 150
>PRK06242 flavodoxin; Provisional
Probab=78.42 E-value=3.6 Score=27.32 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=29.8
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHH-CCCeEEEEcchhH
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQAS-NGRLYAAVCASPA 70 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~-~~~~v~aic~g~~ 70 (145)
.+||.|++..- ...-.-.+.+.+||.+... +++.++.+|++++
T Consensus 42 ~~~d~ii~g~p---vy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~ 85 (150)
T PRK06242 42 SEYDLIGFGSG---IYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGL 85 (150)
T ss_pred hHCCEEEEeCc---hhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCC
Confidence 48999888432 2223346788899987654 6899999988653
No 151
>PRK14817 NADH dehydrogenase subunit B; Provisional
Probab=77.24 E-value=5.5 Score=28.01 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=30.2
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
++.++|+++|-|.. . ......++.+.++.++.|+|.|+++
T Consensus 72 sPR~ADillVeG~V-T----~~m~~~l~~~~e~~p~pK~VIAvGa 111 (181)
T PRK14817 72 SPRQADLLMVVGTV-N----CKQAPILQRVYEQMADPKWVMAFGV 111 (181)
T ss_pred CCcceeEEEEEecC-C----ccchHHHHHHHHHcccCCEEEEecc
Confidence 45689999998874 2 1335567777888889999999965
No 152
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=76.59 E-value=4.8 Score=26.77 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=28.0
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHH--HCCCeEEEEcch
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQA--SNGRLYAAVCAS 68 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~--~~~~~v~aic~g 68 (145)
+.++||.||+.++. ..-.-.+.+.+|+++.. -+++.++.++.+
T Consensus 40 ~~~~yD~vi~gspi---y~g~~~~~~~~fi~~~~~~l~~k~v~~f~~~ 84 (143)
T PF12724_consen 40 DLSDYDAVIFGSPI---YAGRIPGEMREFIKKNKDNLKNKKVALFSVG 84 (143)
T ss_pred ccccCCEEEEEEEE---ECCcCCHHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 45689999986543 22234667889998754 356667666654
No 153
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=74.56 E-value=12 Score=24.72 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=28.8
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
..+||.|+|... ....=..++.+..|+++...+++.++.+++|
T Consensus 48 ~~~~d~iilgs~--t~~~g~~p~~~~~fl~~l~~~~k~~avfgtg 90 (140)
T TIGR01754 48 PENYDLVFLGTW--TWERGRTPDEMKDFIAELGYKPSNVAIFGTG 90 (140)
T ss_pred hhhCCEEEEEcC--eeCCCcCCHHHHHHHHHhcccCCEEEEEEcC
Confidence 347999988553 1111113457888888877788888888875
No 154
>PRK06411 NADH dehydrogenase subunit B; Validated
Probab=73.99 E-value=7.3 Score=27.46 Aligned_cols=40 Identities=8% Similarity=0.020 Sum_probs=28.6
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.+.+.|+++|-|.. .. .....++.+.++.++.++|.|+++
T Consensus 71 sPr~aDvllV~G~v--t~---~~~~~l~~~~e~mp~pk~VIA~Ga 110 (183)
T PRK06411 71 SPRQADLMIVAGTL--TN---KMAPALRRLYDQMPEPKWVISMGS 110 (183)
T ss_pred CCCceeEEEEEeCC--Cc---cchHHHHHHHHHcCcCCeEEEEec
Confidence 35579999999974 11 235566666677778999999865
No 155
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=72.53 E-value=7 Score=26.84 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchh
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~ 69 (145)
.++||.|++..+ ...-.-++.+++||++.. ++.|+.+++.|
T Consensus 37 ~~~yD~i~lG~w---~d~G~~d~~~~~fl~~l~--~KkV~lF~T~G 77 (160)
T PF12641_consen 37 LEDYDLIFLGFW---IDKGTPDKDMKEFLKKLK--GKKVALFGTAG 77 (160)
T ss_pred CCCCCEEEEEcC---ccCCCCCHHHHHHHHHcc--CCeEEEEEecC
Confidence 358999998444 233356899999999964 56677776643
No 156
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=69.94 E-value=9.3 Score=25.89 Aligned_cols=40 Identities=8% Similarity=-0.019 Sum_probs=25.4
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
++.+.|+++|-|.. ... ..+.++-+.++.++.|+|.|+++
T Consensus 54 sPr~aDvllVtG~v-t~~----~~~~l~~~~e~~p~pk~VIA~Gs 93 (145)
T TIGR01957 54 SPRQADVMIVAGTV-TKK----MAPALRRLYDQMPEPKWVISMGA 93 (145)
T ss_pred CCCcceEEEEecCC-cHH----HHHHHHHHHHhccCCceEEEecc
Confidence 35579999999974 211 23333334445566899999865
No 157
>PRK14820 NADH dehydrogenase subunit B; Provisional
Probab=69.25 E-value=11 Score=26.52 Aligned_cols=40 Identities=20% Similarity=0.090 Sum_probs=30.1
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
++.++|+++|-|-. .. +....++.++++.++.++|.|+++
T Consensus 70 sPR~aDillVeG~V--T~---~m~~~l~~~~e~~p~pk~VIAvGa 109 (180)
T PRK14820 70 SPRQADMLMVMGTI--AK---KMAPVLKQVYLQMAEPRWVVAVGA 109 (180)
T ss_pred CCccceEEEEEecC--Cc---ccHHHHHHHHHhcCCCCeEEEEec
Confidence 45689999999874 22 336777777778889999999865
No 158
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=69.11 E-value=7.1 Score=32.26 Aligned_cols=52 Identities=15% Similarity=0.133 Sum_probs=30.6
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHH--CCCeEEEEcchhHHHhhhccccCCceee
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQAS--NGRLYAAVCASPAVALGSWGLLKGLKAT 85 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~--~~~~v~aic~g~~~~La~agll~g~~~t 85 (145)
.||+|+|.-|.+++ ..++-+..+.+... +..+|.+||-|- .+.++..|..+.
T Consensus 64 ~FDaIVVgPGPG~P----~~a~d~gI~~rl~~~~~~iPilGICLGf----Qal~l~hGA~v~ 117 (767)
T KOG1224|consen 64 AFDAIVVGPGPGSP----MCAADIGICLRLLLECRDIPILGICLGF----QALGLVHGAHVV 117 (767)
T ss_pred ccceEEecCCCCCC----CcHHHHHHHHHHHHhcCCCceeeeehhh----HhHhhhccccee
Confidence 49999996664333 22333333333333 358999999963 344566665554
No 159
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=65.83 E-value=10 Score=28.83 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=31.1
Q ss_pred cccCCCCCCccEEEEcCCccChhccc--c---ChHHHHHHHHHHHCCCeEEEEcchhHH
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATNLK--E---SKVLETIVKKQASNGRLYAAVCASPAV 71 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~~~--~---~~~l~~~l~~~~~~~~~v~aic~g~~~ 71 (145)
.++++....||++||.|-. .+.+. + =+++.+++.....+.....-+|=|+..
T Consensus 90 ~~~~i~~~~~DglIITGAP--vE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqA 146 (298)
T PF04204_consen 90 TFDEIKDRKFDGLIITGAP--VEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQA 146 (298)
T ss_dssp -HHHCTTS-EEEEEE---T--TTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHH
T ss_pred CHHHHhhCCCCEEEEeCCC--cCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHH
Confidence 4566666789999999863 33322 1 146667666666677789999986543
No 160
>PRK14815 NADH dehydrogenase subunit B; Provisional
Probab=65.04 E-value=15 Score=25.84 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=27.8
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
++.++|+++|-|-. . .+..+.++-+.++.++.|+|.|+++
T Consensus 70 SPR~ADillVtG~V--T---~~m~~~l~r~ye~~p~pK~VIAvGs 109 (183)
T PRK14815 70 SPRQADVMIVAGTV--T---YKMALAVRRIYDQMPEPKWVIAMGA 109 (183)
T ss_pred CCccccEEEEeCcC--c---hhhHHHHHHHHHhCCCCCEEEEecc
Confidence 35689999998863 1 1234555556667788999999865
No 161
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=64.82 E-value=16 Score=26.64 Aligned_cols=38 Identities=11% Similarity=0.069 Sum_probs=29.3
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.+.|+++|-|... .+++...+.+++..++.++|.|+++
T Consensus 49 ~~~dil~VeG~i~-----~~~~~~~~~~~~~~~~ak~vVA~Gt 86 (228)
T TIGR03294 49 PEMDVALVEGSVC-----LQDEHSLEEIKELREKAKVVVALGA 86 (228)
T ss_pred CCccEEEEeCCCC-----CCccHHHHHHHHHhccCCEEEEeec
Confidence 3689999988752 1344577888999999999999865
No 162
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=64.53 E-value=13 Score=26.47 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=19.1
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCe-EEEEcc
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRL-YAAVCA 67 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~-v~aic~ 67 (145)
+.+.|.+||+|.-. .-+++..+.|+++.++|.. |+.-.+
T Consensus 54 dL~~Ykllv~P~~~------~l~~~~~~~L~~yV~~GG~li~~~~t 93 (207)
T PF08532_consen 54 DLSGYKLLVLPSLY------ILSPEFAERLRAYVENGGTLILTPRT 93 (207)
T ss_dssp --TT-SEEEES--S------C--HHH---HHHHHT-SS-EEE-TTT
T ss_pred CcccCcEEEEeeEE------EEChHHHHHHHHHHHCCCEEEEEccc
Confidence 45689999999852 3577888888998887654 444444
No 163
>PRK14814 NADH dehydrogenase subunit B; Provisional
Probab=63.18 E-value=16 Score=25.78 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=27.2
Q ss_pred CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 23 RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 23 ~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
++.++|+++|.|-. .. +..+.++-+.++.++.++|.|+++
T Consensus 70 sPR~ADvllVtG~V--T~---~m~~~l~~~yeqmp~pk~VIAvGs 109 (186)
T PRK14814 70 SPRQADMILVLGTI--TY---KMAPVLRQIYDQMAEPKFVISVGA 109 (186)
T ss_pred CcccceEEEEeccC--ch---hhHHHHHHHHHhcCCCCeEEEecc
Confidence 35689999998863 21 244555555566677899999865
No 164
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=61.11 E-value=25 Score=24.40 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=28.5
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHH--HCCCeEEEEcch
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQA--SNGRLYAAVCAS 68 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~--~~~~~v~aic~g 68 (145)
..+||.||+.++. ..-...+.+.+|+++.. -+++.++.+|.|
T Consensus 44 l~~yD~vIlGspi---~~G~~~~~~~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 44 LSDYDRVVIGASI---RYGHFHSALYKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHCCEEEEECcc---ccCCcCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 3579998885542 11123578888887753 368899999885
No 165
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=61.00 E-value=22 Score=26.20 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=29.9
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+.|+.+|-|+. .|++-++.+++..++.++|.|+++
T Consensus 51 EvDValVEGsV-------~~ee~lE~v~ElRekakivVA~Gs 85 (247)
T COG1941 51 EVDVALVEGSV-------CDEEELELVKELREKAKIVVALGS 85 (247)
T ss_pred cccEEEEeccc-------CcHHHHHHHHHHHHhCcEEEEEec
Confidence 48999998874 278888999999999999999876
No 166
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=60.19 E-value=21 Score=26.43 Aligned_cols=39 Identities=8% Similarity=-0.013 Sum_probs=27.8
Q ss_pred CCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchh
Q 045076 22 CRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69 (145)
Q Consensus 22 ~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~ 69 (145)
.+++++|++|+.||- + .+++..+++...+.+|.+|-.|.
T Consensus 21 ~~~~~~Dlvi~iGGD-G--------TlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 21 VPIEEADVIVALGGD-G--------FMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred CCcccCCEEEEECCC-H--------HHHHHHHHhcCCCCeEEEEeCCC
Confidence 455689999999993 2 45556666666778888887653
No 167
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=59.45 E-value=59 Score=22.79 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=62.1
Q ss_pred cccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEc---------chhHHHhhhccccCCceeecCc
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVC---------ASPAVALGSWGLLKGLKATCYP 88 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic---------~g~~~~La~agll~g~~~t~~~ 88 (145)
.++.+..++++.+|+-+|. +. .+.+.+++..+++|.+..-- ..+.-+|++.+-.+| -+||.+
T Consensus 11 ~l~~al~s~~~~vfLl~g~-----I~---~l~~~v~~~~~~gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dG-IISTk~ 81 (175)
T PF04309_consen 11 DLEKALESDVEVVFLLTGD-----IG---NLKDIVKRLKAAGKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDG-IISTKS 81 (175)
T ss_dssp CCCCCCCSSSSEEEE-SEE-----CC---CHHHHHHHHHHTT-EEEEECCGEETB-SSHHHHHHHHHTT--SE-EEESSH
T ss_pred HHHHHHcCCCCEEEEEcCc-----HH---HHHHHHHHHHHcCCEEEEEehhcCCCCCCHHHHHHHHHcCCCcE-EEeCCH
Confidence 3444444578999998873 22 45566677777787766432 223445777776777 678888
Q ss_pred chhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHh
Q 045076 89 SFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQL 132 (145)
Q Consensus 89 ~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~ 132 (145)
......++.|.....+.|..| +.+++-+++.++..
T Consensus 82 ~~i~~Ak~~gl~tIqRiFliD---------S~al~~~~~~i~~~ 116 (175)
T PF04309_consen 82 NLIKRAKKLGLLTIQRIFLID---------SSALETGIKQIEQS 116 (175)
T ss_dssp HHHHHHHHTT-EEEEEEE-SS---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEeeeec---------HHHHHHHHHHHhhc
Confidence 888887777666677778888 57888888888764
No 168
>PRK14816 NADH dehydrogenase subunit B; Provisional
Probab=58.62 E-value=25 Score=24.81 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=25.8
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+.+.|+++|.|.. .. .....+.-+.++.++.|+|.|+++
T Consensus 79 PRhADvllVtG~V--T~---~m~~~l~~~~e~~p~pK~VIAvGs 117 (182)
T PRK14816 79 PRQADMIMVCGTI--TN---KMAPVLKRLYDQMADPKYVIAVGG 117 (182)
T ss_pred CCcceEEEEecCC--cc---hhHHHHHHHHHhcCCCCEEEEecc
Confidence 4579999998863 11 233334444556778899999865
No 169
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=58.23 E-value=10 Score=28.83 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=34.5
Q ss_pred cccCCCCCCccEEEEcCCccChhcccc-----ChHHHHHHHHHHHCCCeEEEEcchhH
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATNLKE-----SKVLETIVKKQASNGRLYAAVCASPA 70 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~~~~-----~~~l~~~l~~~~~~~~~v~aic~g~~ 70 (145)
.|+++....||++||.|-. .+.+.- =+++.+.+.....+-....-+|=|+.
T Consensus 91 ~f~~ik~~~fDGlIITGAP--vE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAq 146 (300)
T TIGR01001 91 TFEAVKDRKFDGLIITGAP--VELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQ 146 (300)
T ss_pred CHHHHhcCCCCEEEEcCCC--cCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 4556656789999999973 333321 14677777666667777888998644
No 170
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=57.52 E-value=57 Score=23.11 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=33.4
Q ss_pred cCCCEEeccccccCC---CCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 8 CHGVKIVADALVSDC---RDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 8 ~~G~~i~~d~~~~~~---~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+.|+.+......+.. .+++||+||+.... + .. -++.-.+-|+++.++|+-+.++..
T Consensus 31 ~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~-~-~~--l~~~~~~al~~~v~~Ggglv~lH~ 89 (217)
T PF06283_consen 31 SEGFEVTVTEDPDDLTPENLKGYDVVVFYNTG-G-DE--LTDEQRAALRDYVENGGGLVGLHG 89 (217)
T ss_dssp TTCEEEEECCSGGCTSHHCHCT-SEEEEE-SS-C-CG--S-HHHHHHHHHHHHTT-EEEEEGG
T ss_pred CCCEEEEEEeCcccCChhHhcCCCEEEEECCC-C-Cc--CCHHHHHHHHHHHHcCCCEEEEcc
Confidence 356666543333322 23689999998763 1 11 366677777888889999999984
No 171
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=56.61 E-value=18 Score=26.93 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=23.7
Q ss_pred CCccEEEEcCCccChhc--------------cccChHHHHHHHHHHH
Q 045076 25 AVFDLIALPVCMPDATN--------------LKESKVLETIVKKQAS 57 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~--------------~~~~~~l~~~l~~~~~ 57 (145)
+++|+||+.||.+...+ +..++..+++|++++.
T Consensus 59 ~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~~al~~i~~~~~ 105 (255)
T COG1058 59 ERADVVITTGGLGPTHDDLTAEAVAKALGRPLVLDEEALAMIEEKYA 105 (255)
T ss_pred hCCCEEEECCCcCCCccHhHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 46999999999753322 3347888888888665
No 172
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=56.07 E-value=40 Score=21.41 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=29.9
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
+-|.+|+.+-. ..++.+.+.++.+.+++..+.+++..
T Consensus 47 ~~d~vi~iS~s------G~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 47 PGDVVIAISNS------GETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred CCCEEEEEeCC------CCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 56888877652 36789999999999999999998874
No 173
>PRK07116 flavodoxin; Provisional
Probab=55.52 E-value=16 Score=24.79 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=27.7
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.+||.|++.. + ...-...+.+..||++..-+++.++.+|+
T Consensus 75 ~~~D~Iiig~--P-v~~~~~p~~v~~fl~~~~l~~k~v~~f~T 114 (160)
T PRK07116 75 AEYDVIFLGF--P-IWWYVAPRIINTFLESYDFSGKTVIPFAT 114 (160)
T ss_pred HhCCEEEEEC--C-hhccccHHHHHHHHHhcCCCCCEEEEEEe
Confidence 4799988733 2 22223456788999887667888888876
No 174
>PF10034 Dpy19: Q-cell neuroblast polarisation; InterPro: IPR018732 This entry represents the Dpy-19 protein from Caenorhabditis elegans and its homologues in other Metazoa, including mammals. In C. elegans, Dpy-19 is required to orient neuroblasts QL and QR correctly on the anterior/posterior (A/P) axis. These neuroblasts are born in the same A/P position, but polarise and migrate left/right asymmetrically, where QL migrates toward the posterior and QR migrates toward the anterior. After their migrations, QL (but not QR) switches on the Hox gene mab-5. Dpy-19 is required along with Unc-40 to express Mab-5 correctly in the Q cell descendants []. A mammalian dpy-19 homologue was found to be expressed in GABAergic neurons []. The mammalian homologue of Mab-5 is the Gsh2 homeobox transcription factor, which plays a crucial role in the development of GABAergic neurons. ; GO: 0016021 integral to membrane
Probab=52.12 E-value=7.6 Score=32.78 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=36.1
Q ss_pred cChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhh-hhcc
Q 045076 44 ESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFME-QLAP 96 (145)
Q Consensus 44 ~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~-~l~~ 96 (145)
+.+++++||++.-+.+.+.++- .. ++|.-.+-.|++++-||.+++ ++++
T Consensus 504 d~~eL~~WIk~nt~~~AvFAGs---M~-lma~vkL~T~r~ivnHPhYEd~~LR~ 553 (642)
T PF10034_consen 504 DTEELMEWIKSNTPPDAVFAGS---MP-LMASVKLCTGRPIVNHPHYEDADLRE 553 (642)
T ss_pred CHHHHHHHHHhcCCCCCeeccC---cc-hHHHHHHhcCCccccCcccCCHHHHH
Confidence 3478999999877766544432 33 688888999999999999876 4443
No 175
>PRK06703 flavodoxin; Provisional
Probab=51.21 E-value=40 Score=22.35 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=22.7
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHH---HHCCCeEEEEcchh
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQ---ASNGRLYAAVCASP 69 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~---~~~~~~v~aic~g~ 69 (145)
.+||.|++..-..+... ..+.+..|+... ..+++.++.++.|+
T Consensus 47 ~~~d~viigspt~~~g~--~p~~~~~f~~~l~~~~l~~k~~~vfg~g~ 92 (151)
T PRK06703 47 LAYDGIILGSYTWGDGD--LPYEAEDFHEDLENIDLSGKKVAVFGSGD 92 (151)
T ss_pred hcCCcEEEEECCCCCCc--CcHHHHHHHHHHhcCCCCCCEEEEEccCC
Confidence 47898888442111111 122355555443 34578888887753
No 176
>PRK14819 NADH dehydrogenase subunit B; Provisional
Probab=49.40 E-value=40 Score=25.13 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=25.2
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+.++|++||-|.. .. ...+.+.+.. ++.++.|+|.|+++
T Consensus 69 PRhADIlLVtG~V-T~---km~~~L~rly-eqmP~PK~VIAvGa 107 (264)
T PRK14819 69 PRQADLMIVAGTV-TK---KMAPQVVRLY-NQMPEPRYVISMGA 107 (264)
T ss_pred CCcceEEEEecCC-ch---hhHHHHHHHH-HhccCCCeEEEEcc
Confidence 4579999999974 11 1233444444 44667889998854
No 177
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=49.01 E-value=20 Score=28.38 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=42.1
Q ss_pred CCCEEeccccccCCCCCCccEEEEcCCccChhc--cccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 9 HGVKIVADALVSDCRDAVFDLIALPVCMPDATN--LKESKVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 9 ~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~--~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
.|+.|.+...-..++ .+=||.++++-+.. +....+++++++...++..+++-||.|++.+|.
T Consensus 65 ~GvVVt~~g~~~~~~----~ieViea~HPvPDe~s~~asrrlL~~v~~l~e~D~Vi~LISGGGSaL~e 128 (422)
T COG2379 65 AGVVVTPYGYGGPCP----RIEVIEAGHPVPDEASLKASRRLLELVSGLTEDDLVIVLISGGGSALLE 128 (422)
T ss_pred CceEeccCccCCCCC----ceeEEeCCCCCCCchhHHHHHHHHHHhcCCCCCcEEEEEEeCCchhhcc
Confidence 466666665444332 44467888754332 445678888888887888999999999886554
No 178
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=47.54 E-value=51 Score=23.70 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=34.4
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceee
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKAT 85 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t 85 (145)
.-|.+++.- .+.++.-++.|..||-.....|+..--.-+|+ .||+.||++-
T Consensus 87 aAD~vVi~~---PM~Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp------~GLl~gKKv~ 137 (202)
T COG1182 87 AADKVVIAA---PMYNFNIPAQLKAYIDHIAVAGKTFKYTENGP------VGLLTGKKVL 137 (202)
T ss_pred hcCeEEEEe---cccccCCCHHHHHHHHHHhcCCceEEeccCCc------ccccCCceEE
Confidence 346666632 35556667788888888888888777666654 4777777764
No 179
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=47.31 E-value=30 Score=25.86 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=38.1
Q ss_pred CCccEEEEcCCccChh--ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 25 AVFDLIALPVCMPDAT--NLKESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 25 ~~~D~liipGG~~~~~--~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
++.+.||+.||- ... ....|-++.+.|++.+++|..|++..+| +.++..
T Consensus 105 ~~a~gIfftGGD-Q~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAG-AavM~~ 155 (293)
T COG4242 105 ENATGIFFTGGD-QLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAG-AAVMSD 155 (293)
T ss_pred HhCceEEEecCc-ceeeeeeccCCHHHHHHHHHHhcCceecccccc-hhhcCC
Confidence 478999999994 222 2356889999999999999999999996 446664
No 180
>PHA02097 hypothetical protein
Probab=47.01 E-value=22 Score=19.57 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=20.6
Q ss_pred ecCCCEEeccccccCCCCCCccEEEEcCC
Q 045076 7 ACHGVKIVADALVSDCRDAVFDLIALPVC 35 (145)
Q Consensus 7 ~~~G~~i~~d~~~~~~~~~~~D~liipGG 35 (145)
+-.|+.|....+|+ + +.||+-||||-
T Consensus 18 tp~gv~iri~~tf~-~--~~f~~~fi~~i 43 (59)
T PHA02097 18 TPGGVIIRIAHTFD-V--SNFKIQFIAGV 43 (59)
T ss_pred CCCcEEEEEEeEEe-e--ccceEEEeCCc
Confidence 45788888888885 3 48999999985
No 181
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=46.70 E-value=50 Score=24.10 Aligned_cols=39 Identities=15% Similarity=0.007 Sum_probs=27.0
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+.+.|+++|.|-. . ....+.+..+.++.++.|+|.|+++
T Consensus 69 PRhADvliVtG~V--T---~km~~~L~rlyeqmPePK~VIA~Ga 107 (225)
T CHL00023 69 PRQADLILTAGTV--T---MKMAPSLVRLYEQMPEPKYVIAMGA 107 (225)
T ss_pred cccceEEEEecCC--c---cccHHHHHHHHHhcCCCCeEEEEcc
Confidence 4578999998863 2 2344555556677788899999854
No 182
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=45.97 E-value=66 Score=24.84 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=23.0
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEE
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAV 65 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~ai 65 (145)
.++.|||-|- +.-++..++.+.+.|+++.++|.+|...
T Consensus 233 ~~~GiVl~~~--G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~ 270 (335)
T PRK09461 233 PVKALILRSY--GVGNAPQNPALLQELKEASERGIVVVNL 270 (335)
T ss_pred CCCEEEEccC--CCCCCCCCHHHHHHHHHHHHCCCEEEEe
Confidence 3566666552 1222233467888888888887766554
No 183
>PRK05568 flavodoxin; Provisional
Probab=42.31 E-value=55 Score=21.30 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHH--CCCeEEEEcchh
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQAS--NGRLYAAVCASP 69 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~--~~~~v~aic~g~ 69 (145)
.+||.|++....- ......+..+..|+.+... +++.++.+|+.+
T Consensus 47 ~~~d~iilgsp~y-~~~~~~~~~~~~f~~~~~~~~~~k~~~~f~t~G 92 (142)
T PRK05568 47 KGADVVALGSPAM-GDEVLEEGEMEPFVESISSLVKGKKLVLFGSYG 92 (142)
T ss_pred HhCCEEEEECCcc-CcccccchhHHHHHHHhhhhhCCCEEEEEEccC
Confidence 4799998844311 1111112457777776532 688888888743
No 184
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=41.84 E-value=14 Score=25.13 Aligned_cols=64 Identities=16% Similarity=0.236 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHH
Q 045076 47 VLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFA 125 (145)
Q Consensus 47 ~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~ 125 (145)
.+...=+.|.+.+..=++.|+ |-|+++...+|+..+- | ..+++++. .+||+--|.|....++.+
T Consensus 81 ~l~pvq~af~~~~a~QCGfCt-PG~vms~~~ll~~~p~---p-s~~ei~~a----------l~GnLCRCTGY~~I~~Av 144 (148)
T TIGR03193 81 RLSRLQQAFHERLGTQCGFCT-PGMIMAAEALLRRNPS---P-SRDEIRAA----------LAGNLCRCTGYVKIIESV 144 (148)
T ss_pred CCCHHHHHHHHcCCCcCCCCC-ccHHHHHHHHHHcCCC---C-CHHHHHHH----------HcCCccCCCCCHHHHHHH
Confidence 344444557778888999999 5679999999875332 2 23333332 357777777776555544
No 185
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=41.43 E-value=82 Score=19.16 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=9.1
Q ss_pred CCCccEEEEcC
Q 045076 24 DAVFDLIALPV 34 (145)
Q Consensus 24 ~~~~D~liipG 34 (145)
.++||+++..+
T Consensus 68 ~~~~D~v~~~~ 78 (112)
T PF12847_consen 68 LEPFDLVICSG 78 (112)
T ss_dssp SSCEEEEEECS
T ss_pred CCCCCEEEECC
Confidence 35799999988
No 186
>PRK09271 flavodoxin; Provisional
Probab=41.20 E-value=85 Score=21.16 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=23.2
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHH---CCCeEEEEcch
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQAS---NGRLYAAVCAS 68 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~---~~~~v~aic~g 68 (145)
.++|+|+|..-.-+.. ..++.+..|+..... +++.++.+++|
T Consensus 50 ~~~d~vilgt~T~~~G--~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 50 EDYDLYLLGTWTDNAG--RTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred ccCCEEEEECcccCCC--cCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 4689998855211111 112345555554433 67778888775
No 187
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.11 E-value=58 Score=24.29 Aligned_cols=35 Identities=6% Similarity=-0.053 Sum_probs=24.5
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
+++|++++-||- + .+++.++.+...+.+|.+|-.|
T Consensus 32 ~~~D~vi~iGGD-G--------T~L~a~~~~~~~~iPilGIN~G 66 (259)
T PRK00561 32 DGADYLFVLGGD-G--------FFVSTAANYNCAGCKVVGINTG 66 (259)
T ss_pred CCCCEEEEECCc-H--------HHHHHHHHhcCCCCcEEEEecC
Confidence 468999999993 3 3445556666667788887765
No 188
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=39.68 E-value=20 Score=28.80 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=18.3
Q ss_pred ecCCCEEeccccccCCCCCCccEEEEcCCc
Q 045076 7 ACHGVKIVADALVSDCRDAVFDLIALPVCM 36 (145)
Q Consensus 7 ~~~G~~i~~d~~~~~~~~~~~D~liipGG~ 36 (145)
...++......+....+...||+||+-||.
T Consensus 17 ~t~~~~~~~~~s~~~~~~~~~dVvIvGgGp 46 (481)
T KOG3855|consen 17 YTQRLDTRRTASAKSTDTAKYDVVIVGGGP 46 (481)
T ss_pred cccccccccccccccCCcccCCEEEECCch
Confidence 334444444444444455589999998885
No 189
>TIGR02922 conserved hypothetical protein TIGR02922. Two members of this family are found in Colwellia psychrerythraea 34H and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by TIGR02595.
Probab=38.69 E-value=24 Score=20.25 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=12.7
Q ss_pred HHHHCCCeEEEEcchh
Q 045076 54 KQASNGRLYAAVCASP 69 (145)
Q Consensus 54 ~~~~~~~~v~aic~g~ 69 (145)
+-+++||.|.|+|.|-
T Consensus 39 qeFkrGKsIiAV~EGe 54 (67)
T TIGR02922 39 QEFKRGKSIIAVCEGE 54 (67)
T ss_pred hHHcCCCeEEEEEecc
Confidence 3456899999999964
No 190
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=38.66 E-value=19 Score=24.55 Aligned_cols=66 Identities=17% Similarity=0.311 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHH
Q 045076 48 LETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVA 127 (145)
Q Consensus 48 l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~ 127 (145)
+...=+.|.+.+..=++.|+ |-++++...||+..+- | ..+++++. .+||+--|.|....++.+..
T Consensus 83 l~pvQ~af~~~~a~QCGfCt-pG~im~~~~ll~~~p~---p-~~~ei~~a----------l~gnlCRCtgY~~I~~Av~~ 147 (151)
T TIGR03198 83 LDPCQTAFLEEGGFQCGYCT-PGMVVALKALFRETPQ---P-SDEDMEEG----------LSGNLCRCTGYGGIIRSACR 147 (151)
T ss_pred CCHHHHHHHHcCCCcCCCCC-ccHHHHHHHHHHcCCC---C-CHHHHHHH----------HcCCCcCCCCCHHHHHHHHH
Confidence 44444557778888999999 5679999999975331 2 23334332 46788878887766665554
Q ss_pred H
Q 045076 128 L 128 (145)
Q Consensus 128 l 128 (145)
+
T Consensus 148 ~ 148 (151)
T TIGR03198 148 I 148 (151)
T ss_pred H
Confidence 4
No 191
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=38.61 E-value=91 Score=22.85 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceee
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKAT 85 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t 85 (145)
.+.+|+++|... .| +....+|+.. +++|.++|.+ +. +... ..|++++
T Consensus 67 ~~GvdaiiIaCf--------~D-Pgl~~~Re~~--~~PviGi~eA-sv-~~A~--~vgrrfs 113 (230)
T COG4126 67 EQGVDAIIIACF--------SD-PGLAAARERA--AIPVIGICEA-SV-LAAL--FVGRRFS 113 (230)
T ss_pred ccCCcEEEEEec--------CC-hHHHHHHHHh--CCCceehhHH-HH-HHHH--HhcceEE
Confidence 345888888553 23 6677778776 6789999995 43 3332 3466654
No 192
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=38.07 E-value=1e+02 Score=19.36 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=28.5
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
+-|++|+..-. ...+++.+.++.+.++|..+.+++..
T Consensus 46 ~~d~~I~iS~s------G~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 46 EDTLVIAISQS------GETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCcEEEEEeCC------cCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 56777776542 25678999999999999999998863
No 193
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=37.59 E-value=86 Score=21.95 Aligned_cols=39 Identities=5% Similarity=0.049 Sum_probs=24.8
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+.+.|+++|.|-. .. +..+.+.-+-++.++-|+|.|+++
T Consensus 68 PRhADvLlVtG~v--T~---km~~~l~~~yeqmPePK~VIA~G~ 106 (173)
T PRK14818 68 PRQADFMIVAGTL--TY---KMAERARLLYDQMPEPKYVISMGS 106 (173)
T ss_pred cccccEEEEeCcC--cc---ccHHHHHHHHHhCCCCCEEEEecc
Confidence 4578899998853 21 233333334455678899999876
No 194
>PRK03673 hypothetical protein; Provisional
Probab=37.56 E-value=50 Score=26.27 Aligned_cols=34 Identities=6% Similarity=-0.012 Sum_probs=24.3
Q ss_pred CCccEEEEcCCccCh-hc-------------cccChHHHHHHHHHHHC
Q 045076 25 AVFDLIALPVCMPDA-TN-------------LKESKVLETIVKKQASN 58 (145)
Q Consensus 25 ~~~D~liipGG~~~~-~~-------------~~~~~~l~~~l~~~~~~ 58 (145)
.++|++|+.||.+.. ++ +..++...+.|++++++
T Consensus 59 ~~~DlVI~tGGlGpt~dD~t~~avA~a~g~~L~~d~e~~~~i~~~f~~ 106 (396)
T PRK03673 59 QHADVLIVNGGLGPTSDDLSALAAATAAGEGLVLHEEWLAEMERFFAE 106 (396)
T ss_pred ccCCEEEEcCCCCCCCcccHHHHHHHHcCCCceeCHHHHHHHHHHHHh
Confidence 479999999996422 11 34578899999887753
No 195
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=37.38 E-value=75 Score=22.58 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=25.0
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+.+.|+++|.|.. .. ...+.+.+..+ +.++.|+|.|+++
T Consensus 65 PR~ADvllVtG~V--t~--km~~~l~~~y~-qmPePK~VIA~Ga 103 (189)
T PRK14813 65 PRQSDLMIVAGTV--TM--KMAERVVRLYE-QMPEPRYVLSMGS 103 (189)
T ss_pred cccceEEEEeccC--ch--hhHHHHHHHHH-hCCCCCEEEEecc
Confidence 4468999998874 11 23445555444 3457889999875
No 196
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=37.13 E-value=26 Score=31.08 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHH
Q 045076 46 KVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFA 125 (145)
Q Consensus 46 ~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~ 125 (145)
..+..+-+.|.+.+..=|+.|+ +-++++...||+...- |. .+++++. .+||+.-|.|....++..
T Consensus 77 ~~~~~~q~af~~~~a~QCG~Ct-pG~~~~~~~ll~~~~~---p~-~~~i~~~----------l~gnlcrctgy~~i~~av 141 (951)
T TIGR03313 77 NQLSLVQQAMVDVGVVQSGYND-PAAALILTDLLDRNTQ---PN-RAEIDDA----------LSGLFSRDAGYQQFYQVI 141 (951)
T ss_pred CCCCHHHHHHHHcCCCcCCCCh-HHHHHHHHHHHhcCCC---CC-HHHHHHH----------HhcceeccCCcHHHHHHH
Confidence 3455555567788999999999 5678999999986432 22 3333332 358888888888777766
Q ss_pred HHHHHHhcC
Q 045076 126 VALVEQLYR 134 (145)
Q Consensus 126 l~li~~~~g 134 (145)
....+...+
T Consensus 142 ~~~~~~~~~ 150 (951)
T TIGR03313 142 ELAVKRLKD 150 (951)
T ss_pred HHHHHhccc
Confidence 655554433
No 197
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=36.94 E-value=48 Score=28.32 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=43.5
Q ss_pred eecCCCEEeccc-cccCCC----CCCccEEEEcCCccCh---hccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 6 DACHGVKIVADA-LVSDCR----DAVFDLIALPVCMPDA---TNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 6 ~~~~G~~i~~d~-~~~~~~----~~~~D~liipGG~~~~---~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.+-+|+.+.... +|+|+. +++.|+||=.|--..+ -....||.+...|+++..+|.-+.+++.
T Consensus 475 E~LSG~p~dV~FisFdDi~~~gi~~didViIN~G~a~ta~SGG~~W~d~~~~~aLr~fV~~GGglIGVgD 544 (719)
T TIGR02336 475 ECLSGMPVEVEFISFDDILEHGIDSDIDVIINGGDADTAWSGGDVWTNPKLVETVRAWVRGGGGFVGVGE 544 (719)
T ss_pred HHhcCCCeeEEEecHHHHhhcCCCcCCcEEEecCcccccccCccccCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 345677776653 555552 4689998877752111 1235689999999999999988889887
No 198
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=36.91 E-value=28 Score=24.55 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=26.6
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHH-------HCCCeEEEEcchh
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQA-------SNGRLYAAVCASP 69 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~-------~~~~~v~aic~g~ 69 (145)
.++|.|++... ...-.-.+.+..|+.+.. -.+|+++.+++++
T Consensus 67 ~~aD~ii~GSP---ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g 115 (197)
T TIGR01755 67 ADYDAIIFGTP---TRFGNMASQMRNFLDQTGGLWASGALVGKVGSVFTSTG 115 (197)
T ss_pred HHCCEEEEEec---ccccCccHHHHHHHHhccccccccccCCCEEEEEEECC
Confidence 37999988443 111224566777777763 2378888888754
No 199
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=35.98 E-value=89 Score=18.01 Aligned_cols=35 Identities=11% Similarity=-0.006 Sum_probs=26.1
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVC 66 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic 66 (145)
+=|++++..-. ...+.+.+.+++..++|..+.+++
T Consensus 47 ~~d~~i~iS~s------g~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 47 KGDVVIALSYS------GRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCEEEEEECC------CCCHHHHHHHHHHHHcCCeEEEEe
Confidence 45767665542 236788899999999999999887
No 200
>COG3233 Predicted deacetylase [General function prediction only]
Probab=35.47 E-value=65 Score=23.59 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=28.0
Q ss_pred EEEEcCCccChhccccChHHHHHHHHHHHCCCeEEE
Q 045076 29 LIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64 (145)
Q Consensus 29 ~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~a 64 (145)
.++||-- .+-..+..+++..+||.+..++|--+.-
T Consensus 38 lLViPn~-~~~~~l~~d~rf~~~l~~r~e~Gdel~l 72 (233)
T COG3233 38 LLVIPNH-ANDYPLSKDPRFVDLLTEREEEGDELVL 72 (233)
T ss_pred EEEeecc-CCCCCcccChHHHHHHHHHHhcCCEEEE
Confidence 4788875 4666788999999999999998865554
No 201
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=35.27 E-value=56 Score=29.11 Aligned_cols=58 Identities=9% Similarity=0.077 Sum_probs=41.7
Q ss_pred CCCCCccEEEEcCCccCh----------hccccChHHHHHHHHHHH-CCCeEEEEcchhHHHhhhccccC
Q 045076 22 CRDAVFDLIALPVCMPDA----------TNLKESKVLETIVKKQAS-NGRLYAAVCASPAVALGSWGLLK 80 (145)
Q Consensus 22 ~~~~~~D~liipGG~~~~----------~~~~~~~~l~~~l~~~~~-~~~~v~aic~g~~~~La~agll~ 80 (145)
...++|-.|+.+||+.-. ..+..++.++.-..+|++ +...-.+||+|-. ++++.|.+-
T Consensus 1099 ~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQ-lms~Lg~i~ 1167 (1320)
T KOG1907|consen 1099 HHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQ-LMSRLGWIG 1167 (1320)
T ss_pred eeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhH-HHHHhcccC
Confidence 445689999999996311 224457888877777765 4567788999877 699887764
No 202
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=35.05 E-value=26 Score=31.13 Aligned_cols=72 Identities=21% Similarity=0.173 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHH
Q 045076 46 KVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFA 125 (145)
Q Consensus 46 ~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~ 125 (145)
+.+..+-+.|.+.+..=|+.|+ +-|+++...||+...- | ..+++++. .+||+.-|.|....++..
T Consensus 81 ~~~~~~q~af~~~~~~QCG~Ct-pG~~m~~~~ll~~~~~---p-~~~~i~~~----------l~gnlCRCtgy~~i~~av 145 (956)
T PRK09800 81 NELSLVQQAMVDVGVVQSGYND-PAAALIITDLLDRIAA---P-TREEIDDA----------LSGLFSRDAGWQQYYQVI 145 (956)
T ss_pred CCCCHHHHHHHHcCCCcCCCCh-HHHHHHHHHHHhcCCC---C-CHHHHHHH----------HhhchhccCCcHHHHHHH
Confidence 3455555567888999999999 5679999999976432 2 23333332 357888888887777766
Q ss_pred HHHHHHh
Q 045076 126 VALVEQL 132 (145)
Q Consensus 126 l~li~~~ 132 (145)
....++.
T Consensus 146 ~~~~~~~ 152 (956)
T PRK09800 146 ELAVARK 152 (956)
T ss_pred HHHHHhh
Confidence 5554443
No 203
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=34.94 E-value=86 Score=22.26 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=19.7
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCC-CeEEE
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNG-RLYAA 64 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~-~~v~a 64 (145)
.+|++||-|| . .-+.++++..++.+.+ +.|+-
T Consensus 102 ~~daiFIGGg-~------~i~~ile~~~~~l~~ggrlV~n 134 (187)
T COG2242 102 SPDAIFIGGG-G------NIEEILEAAWERLKPGGRLVAN 134 (187)
T ss_pred CCCEEEECCC-C------CHHHHHHHHHHHcCcCCeEEEE
Confidence 7999999777 3 2345666666554444 44443
No 204
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=34.30 E-value=1.4e+02 Score=19.94 Aligned_cols=36 Identities=11% Similarity=0.009 Sum_probs=28.8
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+-|++|+.... ..++.+++.++.+.++|..+.+|+.
T Consensus 79 ~~D~~i~iS~s------G~t~~~~~~~~~a~~~g~~ii~iT~ 114 (154)
T TIGR00441 79 KGDVLLGISTS------GNSKNVLKAIEAAKDKGMKTITLAG 114 (154)
T ss_pred CCCEEEEEcCC------CCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 55888877753 2577899999999999999999986
No 205
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=34.13 E-value=35 Score=20.88 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=35.8
Q ss_pred HHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhhhhcccCceecccc-EEEe--CCe---EecCCcchHH
Q 045076 49 ETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESR-VQQD--GKV---VTTRGPGTTM 122 (145)
Q Consensus 49 ~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~~-~v~d--g~i---iT~~g~~~~~ 122 (145)
.+++++.+++...+..+|+.|..+=.-+.+|.+|. .+.. ++.| |+. +.++-...+.
T Consensus 2 ~~~~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~------------------~DPaVvvvde~g~~vIplL~GH~GGan 63 (84)
T PF11760_consen 2 KDLLRELFRRYDAIIFIMAAGIVVRAIAPLLKDKD------------------TDPAVVVVDEDGRFVIPLLGGHRGGAN 63 (84)
T ss_dssp ---HHHHCCC-SEEEEES-HHHHHHHHHHH---TT------------------T--EEEEE-TT--EEEEEE-TTTT-HH
T ss_pred hhHHHHHHcCCCeEEEEeCcHHHHHHhChhhcccC------------------CCCCEEEEeCCCCEEEEeccCCcchHH
Confidence 46788888889999999987765555567776543 1211 2233 332 3444455588
Q ss_pred HHHHHHHHHhcChh
Q 045076 123 EFAVALVEQLYRKG 136 (145)
Q Consensus 123 ~~~l~li~~~~g~~ 136 (145)
+++.++-+.+.+..
T Consensus 64 ~lA~~iA~~lga~~ 77 (84)
T PF11760_consen 64 ELARQIAELLGAQP 77 (84)
T ss_dssp HHHHHHHHHTT-EE
T ss_pred HHHHHHHHHhCCEE
Confidence 88888877765543
No 206
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=33.88 E-value=64 Score=23.38 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=28.8
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
+||.-++|-. ..+....-++.+.+.|++..+..+...+|.+|
T Consensus 9 D~DGTL~~~~-~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSG 50 (244)
T TIGR00685 9 DYDGTLSEIV-PDPDAAVVSDRLLTILQKLAARPHNAIWIISG 50 (244)
T ss_pred ecCccccCCc-CCCcccCCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence 5787777754 23443455788999999988877666666664
No 207
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=33.87 E-value=36 Score=27.66 Aligned_cols=55 Identities=5% Similarity=-0.004 Sum_probs=31.5
Q ss_pred cccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhh
Q 045076 16 DALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGS 75 (145)
Q Consensus 16 d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~ 75 (145)
+.....+....|-.+||.||. +.-...+-|.+-. .+..-+.+|.+||-|-. ++++
T Consensus 49 ~t~~~~i~~~~~rgiIiSGGP-~SVya~dAP~~dp---~if~~~vpvLGICYGmQ-~i~~ 103 (552)
T KOG1622|consen 49 TTPAKTITEYGPRGIIISGGP-NSVYAEDAPSFDP---AIFELGVPVLGICYGMQ-LINK 103 (552)
T ss_pred CChhhhhhcCCceEEEEeCCC-CccccCcCCCCCh---hHhccCCcceeehhHHH-HHHH
Confidence 334444444578899999994 3322222222211 23444799999999866 4554
No 208
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=33.56 E-value=1.1e+02 Score=20.10 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=12.1
Q ss_pred cChHHHHHHHHHHHCCCeEEEE
Q 045076 44 ESKVLETIVKKQASNGRLYAAV 65 (145)
Q Consensus 44 ~~~~l~~~l~~~~~~~~~v~ai 65 (145)
+++.+++.++...++|-.+.++
T Consensus 115 ~s~~vi~a~~~Ak~~G~~vIal 136 (138)
T PF13580_consen 115 NSPNVIEAAEEAKERGMKVIAL 136 (138)
T ss_dssp -SHHHHHHHHHHHHTT-EEEEE
T ss_pred CCHHHHHHHHHHHHCCCEEEEE
Confidence 3456666666666666555554
No 209
>TIGR00391 hydA hydrogenase (NiFe) small subunit (hydA). Called (hupA/hydA/hupS/hoxK/vhtG) Involved in hydrogenase reactions performing different specific functions in different species eg (EC 1.12.2.1) in Desulfovibrio gigas,(EC 1.12.99.3) in Wolinella succinogenes and (EC 1.18.99.1) in E.coli and a number of other species and (EC 1.12.99.-) in the archea.
Probab=33.24 E-value=1.1e+02 Score=24.17 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=30.3
Q ss_pred CccEEEEcCCccChhc----cccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATN----LKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~----~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
..|+++|=|+.+.... ........++|++..++.+.|.|+++
T Consensus 113 g~~ILvVEGaIp~~~~G~y~~~~g~~~~e~l~~~a~~A~aVIAvGt 158 (365)
T TIGR00391 113 GQYILVVEGSIPLGDNGIYCMVAGEPIVEHIRKAAEGAAAIIAIGT 158 (365)
T ss_pred CCeEEEEeCCCCCCCCceeeeeCCcHHHHHHHHHhhcCCEEEEEec
Confidence 3688999888632111 11236799999999999999999854
No 210
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=32.63 E-value=82 Score=21.71 Aligned_cols=34 Identities=9% Similarity=0.010 Sum_probs=21.6
Q ss_pred CCccEEEEcCCccCh-hc-------------cccChHHHHHHHHHHHC
Q 045076 25 AVFDLIALPVCMPDA-TN-------------LKESKVLETIVKKQASN 58 (145)
Q Consensus 25 ~~~D~liipGG~~~~-~~-------------~~~~~~l~~~l~~~~~~ 58 (145)
+++|+||+.||.+.. .+ +..++...+.|++++.+
T Consensus 57 ~~~dlVIttGG~G~t~~D~t~ea~~~~~~~~l~~~~e~~~~i~~~~~~ 104 (170)
T cd00885 57 ERADLVITTGGLGPTHDDLTREAVAKAFGRPLVLDEEALERIEARFAR 104 (170)
T ss_pred hCCCEEEECCCCCCCCCChHHHHHHHHhCCCcccCHHHHHHHHHHHHh
Confidence 368999999996321 11 22356777777776643
No 211
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=32.53 E-value=65 Score=21.08 Aligned_cols=46 Identities=22% Similarity=0.102 Sum_probs=30.0
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhH
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA 70 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~ 70 (145)
..+|++++=|..+....-..++++..-|.+..+.+..+++.|.++.
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~a~~ 94 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSSAGA 94 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES--BHH
T ss_pred ccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeechHH
Confidence 4799999977533222234677888888888888888888887654
No 212
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=32.48 E-value=1.4e+02 Score=22.94 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=32.8
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhH
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPA 70 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~ 70 (145)
.+.|++++.|..+ .. ...+.+.+|++...++++.++-=|+|..
T Consensus 128 ~~~d~VvlsGSlP--~g-~~~d~y~~li~~~~~~g~~vilD~Sg~~ 170 (310)
T COG1105 128 ESDDIVVLSGSLP--PG-VPPDAYAELIRILRQQGAKVILDTSGEA 170 (310)
T ss_pred ccCCEEEEeCCCC--CC-CCHHHHHHHHHHHHhcCCeEEEECChHH
Confidence 4788999888742 22 3567888999999999988888888654
No 213
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=32.19 E-value=1.2e+02 Score=20.16 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=38.6
Q ss_pred ecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHH-HHHHHHHHHC-CCeE-EEEcchhHHHhhh
Q 045076 7 ACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVL-ETIVKKQASN-GRLY-AAVCASPAVALGS 75 (145)
Q Consensus 7 ~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l-~~~l~~~~~~-~~~v-~aic~g~~~~La~ 75 (145)
+..++.|.-..+|+..+...||++++ |.+- .++.+..+ .+|+.+...- .-+| +--|++ . +.|+
T Consensus 32 ~~tpleVtyr~t~~~lp~~hYD~~Ll--~vav--tfr~n~tm~~~~l~~Al~mtd~vilalPs~~-q-v~Ae 97 (140)
T COG4999 32 SETPLEVTYRPTFSALPPAHYDMMLL--GVAV--TFRENLTMQHERLAKALSMTDFVILALPSHA-Q-VNAE 97 (140)
T ss_pred hcCCceEEecccccccChhhhceeee--cccc--cccCCchHHHHHHHHHHhhhcceEEecCcHH-H-HhHH
Confidence 45677787778888887788999988 4322 23455443 4677766542 2344 445662 3 5554
No 214
>PF09558 DUF2375: Protein of unknown function (DUF2375); InterPro: IPR014271 Two members of this family are found in Colwellia psychrerythraea (strain 34H / ATCC BAA-681) and one each in various other species of Colwellia and Shewanella. One member from C. psychrerythraea is of special interest because it is preceded by the same cis-regulatory site as a number of genes that have the PEP-CTERM domain described by IPR013424 from INTERPRO.
Probab=32.15 E-value=33 Score=20.00 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=14.7
Q ss_pred HHHHCCCeEEEEcchhHHHh
Q 045076 54 KQASNGRLYAAVCASPAVAL 73 (145)
Q Consensus 54 ~~~~~~~~v~aic~g~~~~L 73 (145)
+.+++||.|.|+|.|-.-+|
T Consensus 41 ~~Fr~GKsIiAVleGe~~iL 60 (71)
T PF09558_consen 41 QSFRRGKSIIAVLEGECKIL 60 (71)
T ss_pred HHHcCCceEEEEEcCceehh
Confidence 45678999999999744333
No 215
>PRK12359 flavodoxin FldB; Provisional
Probab=32.14 E-value=1.4e+02 Score=20.73 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=22.9
Q ss_pred CCccEEEEcCCccChhccccChHHHHHH---HHHHHCCCeEEEEcchhH
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIV---KKQASNGRLYAAVCASPA 70 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l---~~~~~~~~~v~aic~g~~ 70 (145)
.+||.||+.- +....=.-.+...+++ .+..-++|.++..+.|..
T Consensus 44 ~~yD~iIlG~--pTw~~Gel~~d~~~~~~~l~~~dl~gK~vAlFG~Gd~ 90 (172)
T PRK12359 44 EQYDVLILGI--PTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGMGDQ 90 (172)
T ss_pred ccCCEEEEEe--cccCCCcCcHHHHHHHHHHhhCCCCCCEEEEEeCCCC
Confidence 4799888732 2211101123444444 433346888888776543
No 216
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=32.00 E-value=1.2e+02 Score=22.74 Aligned_cols=50 Identities=26% Similarity=0.331 Sum_probs=35.7
Q ss_pred cEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCC
Q 045076 28 DLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKG 81 (145)
Q Consensus 28 D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g 81 (145)
-++.|.|. .+.. ..+....++.+++.+++.+|.+.+-+ .+-+.++|+.++
T Consensus 96 Gv~~ivGC-~n~~--~~~~~~~~iakeL~k~d~LVlt~GC~-a~~l~k~gl~~~ 145 (258)
T cd00587 96 GVALIVGC-NNDK--KQDKAYADIAKELMKRGVMVLATGCA-AEALLKLGLEDG 145 (258)
T ss_pred eEEEEEeC-CCCC--ccchHHHHHHHHHHhCCEEEEecchH-HHHHHhcCCccc
Confidence 34444444 3443 46678889999999988888887553 567899998877
No 217
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=31.60 E-value=1.4e+02 Score=18.93 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=27.8
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+-|++|+.... ..++.+.+.++.+.++|.++.+++.
T Consensus 47 ~~dl~I~iS~S------G~t~~~~~~~~~a~~~g~~vi~iT~ 82 (120)
T cd05710 47 EKSVVILASHS------GNTKETVAAAKFAKEKGATVIGLTD 82 (120)
T ss_pred CCcEEEEEeCC------CCChHHHHHHHHHHHcCCeEEEEEC
Confidence 45777776652 2577889999999999999888886
No 218
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=31.53 E-value=63 Score=19.55 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=21.7
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHC
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASN 58 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~ 58 (145)
..||+++..|+. .. ...++.+..+++++.+.
T Consensus 66 ~~~D~v~~~~~~--~~-~~~~~~~~~ll~~~~~~ 96 (101)
T PF13649_consen 66 GKFDLVVCSGLS--LH-HLSPEELEALLRRIARL 96 (101)
T ss_dssp SSEEEEEE-TTG--GG-GSSHHHHHHHHHHHHHT
T ss_pred CCeeEEEEcCCc--cC-CCCHHHHHHHHHHHHHH
Confidence 479999987762 33 35677888888887764
No 219
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=31.21 E-value=1.3e+02 Score=20.98 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=25.6
Q ss_pred CCCccEEEEcCCccChhcc---ccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 24 DAVFDLIALPVCMPDATNL---KESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~---~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
..+||+||+..- +...+ ...+..++.|+++.++|.-+..++.
T Consensus 65 L~~yD~vIl~dv--~~~~ll~~~~~~~~~~~l~~yV~~GGgLlmigG 109 (177)
T PF07090_consen 65 LNRYDVVILSDV--PANSLLKSRRSPNQLELLADYVRDGGGLLMIGG 109 (177)
T ss_dssp HCT-SEEEEES----HHHHHT----HHHHHHHHHHHHTT-EEEEE-S
T ss_pred HhcCCEEEEeCC--CchhcccccCCHHHHHHHHHHHHhCCEEEEEeC
Confidence 358999999653 33333 2366778888998888887777765
No 220
>PF07911 DUF1677: Protein of unknown function (DUF1677); InterPro: IPR012876 The sequences found in this family are all derived from hypothetical plant proteins of unknown function. The region features a number of highly conserved cysteine residues.
Probab=31.08 E-value=32 Score=21.41 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=18.6
Q ss_pred ChHHHHHHHHHHHCCCeEEEEcch
Q 045076 45 SKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 45 ~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
.+..+..+|..+ .|++|+++|.-
T Consensus 17 T~~YI~~VR~ry-~GrWvCGLC~E 39 (91)
T PF07911_consen 17 TPEYIARVRERY-GGRWVCGLCSE 39 (91)
T ss_pred cHHHHHHHHHHh-CCeehhhcCHH
Confidence 467788888766 59999999984
No 221
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=30.93 E-value=47 Score=24.57 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=24.9
Q ss_pred EEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchh
Q 045076 29 LIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69 (145)
Q Consensus 29 ~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~ 69 (145)
-+-+|.|. .+. ...-+.+.+++.++.++++.|+.-|.+|
T Consensus 142 ~lpipDg~-aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AG 180 (241)
T PTZ00393 142 ELIFPDGD-APT-VDIVSNWLTIVNNVIKNNRAVAVHCVAG 180 (241)
T ss_pred EeecCCCC-CCC-HHHHHHHHHHHHHHHhcCCeEEEECCCC
Confidence 35566653 221 1223566677777777899999999865
No 222
>PRK03670 competence damage-inducible protein A; Provisional
Probab=30.41 E-value=85 Score=23.26 Aligned_cols=33 Identities=6% Similarity=-0.018 Sum_probs=22.8
Q ss_pred CccEEEEcCCccCh-hc-------------cccChHHHHHHHHHHHC
Q 045076 26 VFDLIALPVCMPDA-TN-------------LKESKVLETIVKKQASN 58 (145)
Q Consensus 26 ~~D~liipGG~~~~-~~-------------~~~~~~l~~~l~~~~~~ 58 (145)
.+|+||+.||.+.. ++ +..++...+.|++++.+
T Consensus 60 ~~DlVIttGGlGpt~dD~T~eava~a~g~~l~~~~e~~~~i~~~~~~ 106 (252)
T PRK03670 60 KPEVLVISGGLGPTHDDVTMLAVAEALGRELVLCEDCLERIKEFYEE 106 (252)
T ss_pred CCCEEEECCCccCCCCCchHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 58999999996322 11 34578888888877653
No 223
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=29.97 E-value=69 Score=20.54 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=25.5
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHH---HCCCeEEEEcchhH
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQA---SNGRLYAAVCASPA 70 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~---~~~~~v~aic~g~~ 70 (145)
.++|.|++.....+.... ..+.+.+|+++.. -+++.++.++++++
T Consensus 44 ~~~d~iilgspty~~g~~-p~~~~~~f~~~l~~~~~~gk~~~vfgt~g~ 91 (140)
T TIGR01753 44 LSYDAVLLGCSTWGDEDL-EQDDFEPFFEELEDIDLGGKKVALFGSGDW 91 (140)
T ss_pred hcCCEEEEEcCCCCCCCC-CcchHHHHHHHhhhCCCCCCEEEEEecCCC
Confidence 368998885432111111 1146666666544 36788888887643
No 224
>PRK10468 hydrogenase 2 small subunit; Provisional
Probab=28.99 E-value=1.3e+02 Score=23.87 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=30.7
Q ss_pred CccEEEEcCCccCh----hccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDA----TNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~----~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
..|+|+|=|..+.. ..........+|+++..++.+.|.|+++
T Consensus 111 ~~~ILvVEGaIp~~~~G~y~~~gg~~~~e~l~~~a~~A~aVVAvGt 156 (371)
T PRK10468 111 GQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGS 156 (371)
T ss_pred CCeEEEEeCCCCCCCCcceeeECCchHHHHHHHHhccCCEEEEEec
Confidence 57889998875321 1112346789999999999999999875
No 225
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=28.63 E-value=1.9e+02 Score=19.60 Aligned_cols=37 Identities=27% Similarity=0.200 Sum_probs=29.6
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.+-|++|+.... ...+.+.+.++.+.++|..+.+|+.
T Consensus 71 ~~~Dv~I~iS~s------G~t~~~i~~~~~ak~~g~~ii~IT~ 107 (179)
T TIGR03127 71 KKGDLLIAISGS------GETESLVTVAKKAKEIGATVAAITT 107 (179)
T ss_pred CCCCEEEEEeCC------CCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 356888877652 2577899999999999999999986
No 226
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=28.37 E-value=1.6e+02 Score=20.28 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=24.1
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.++|.+++..|- .....++++..++|+.|..++.
T Consensus 104 ~~iD~~vLvSgD---------~DF~~Lv~~lre~G~~V~v~g~ 137 (160)
T TIGR00288 104 PNIDAVALVTRD---------ADFLPVINKAKENGKETIVIGA 137 (160)
T ss_pred CCCCEEEEEecc---------HhHHHHHHHHHHCCCEEEEEeC
Confidence 478888887772 2445556666677999988874
No 227
>COG2350 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.56 E-value=77 Score=19.68 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=21.1
Q ss_pred ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccc
Q 045076 43 KESKVLETIVKKQASNGRLYAAVCASPAVALGSWGL 78 (145)
Q Consensus 43 ~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agl 78 (145)
..-+..++||++++.+|+. +|.|+ + +...|-
T Consensus 19 ~~r~~H~~~L~~~~a~G~l---l~sGP-~-~~~dg~ 49 (92)
T COG2350 19 AVRPAHLARLKQLYAEGRL---LTSGP-F-PDRDGG 49 (92)
T ss_pred hhhHHHHHHHHHhhhcCeE---EEeCC-C-CCCCCC
Confidence 3457889999999999965 44555 3 454443
No 228
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=27.41 E-value=1.4e+02 Score=23.41 Aligned_cols=69 Identities=13% Similarity=-0.001 Sum_probs=35.6
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHH---HHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhhhhcccCceec
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKK---QASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATV 102 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~---~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~ 102 (145)
++|+|++..- ... ...-+.+..++.. ..-++|+++++++-+++ |. .-....+.++..|+..+
T Consensus 300 ~~d~ii~Gsp--T~~-~~~~~~~~~~l~~l~~~~~~~K~~a~FGsygw~---------g~---a~~~~~~~l~~~g~~~v 364 (394)
T PRK11921 300 KSKAILVGSS--TIN-RGILSSTAAILEEIKGLGFKNKKAAAFGSYGWS---------GE---SVKIITERLKKAGFEIV 364 (394)
T ss_pred hCCEEEEECC--CcC-ccccHHHHHHHHHhhccCcCCCEEEEEecCCCc---------cH---HHHHHHHHHHHCCCEEc
Confidence 5899988432 211 1112444555443 44468888888874331 11 11224455656666666
Q ss_pred cccEEEe
Q 045076 103 ESRVQQD 109 (145)
Q Consensus 103 ~~~~v~d 109 (145)
.+.+...
T Consensus 365 ~~~~~~~ 371 (394)
T PRK11921 365 NDGIREL 371 (394)
T ss_pred cCcEEEE
Confidence 5554443
No 229
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=27.36 E-value=1.7e+02 Score=19.88 Aligned_cols=36 Identities=11% Similarity=-0.035 Sum_probs=28.1
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+-|++|+.... ..++.+.+.++.+.++|.++.+|+.
T Consensus 101 ~~Dv~I~iS~S------G~t~~~i~~~~~ak~~Ga~vI~IT~ 136 (177)
T cd05006 101 PGDVLIGISTS------GNSPNVLKALEAAKERGMKTIALTG 136 (177)
T ss_pred CCCEEEEEeCC------CCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 45777766542 2577999999999999999999985
No 230
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=27.24 E-value=1.6e+02 Score=18.38 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=26.9
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+-|.+|+..-. ....++.+.++...+++..+.+|++
T Consensus 53 ~~d~vi~is~s------g~~~~~~~~~~~ak~~g~~vi~iT~ 88 (131)
T PF01380_consen 53 PDDLVIIISYS------GETRELIELLRFAKERGAPVILITS 88 (131)
T ss_dssp TTEEEEEEESS------STTHHHHHHHHHHHHTTSEEEEEES
T ss_pred ccceeEeeecc------ccchhhhhhhHHHHhcCCeEEEEeC
Confidence 45777776532 2467889999988889988888885
No 231
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=27.20 E-value=33 Score=24.89 Aligned_cols=72 Identities=14% Similarity=0.228 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeec----------Ccc-hhhhhcccCceeccccEEEeCCeEe
Q 045076 46 KVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATC----------YPS-FMEQLAPACAATVESRVQQDGKVVT 114 (145)
Q Consensus 46 ~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~----------~~~-~~~~l~~~~~~~~~~~~v~dg~iiT 114 (145)
+.+...=+.|.+++..=++.|+ +-++++...+|+..+.-. +|. ..+++++ -.+||+.-
T Consensus 130 ~~lhpvQ~Af~~~~a~QCGyCT-PG~imsa~alL~~~~~~~~~~~~~~~~~~p~pt~~eIre----------alsGNlCR 198 (217)
T PRK11433 130 DNLHPMQAAFVKHDGFQCGYCT-PGQICSSVAVLKEIKDGIPSHVTVDLTAAPELTADEIRE----------RMSGNICR 198 (217)
T ss_pred CCCCHHHHHHHHcCCCcCCCCC-ccHHHHHHHHHHhccccCccccccccccCCCCCHHHHHH----------HHcCCccC
Confidence 3455555567788999999999 567899999987532211 111 1222222 24688888
Q ss_pred cCCcchHHHHHHHH
Q 045076 115 TRGPGTTMEFAVAL 128 (145)
Q Consensus 115 ~~g~~~~~~~~l~l 128 (145)
|.|....++....+
T Consensus 199 CtgY~~Iv~Av~~~ 212 (217)
T PRK11433 199 CGAYSNILEAIEDV 212 (217)
T ss_pred CCCcHHHHHHHHHH
Confidence 98887766665544
No 232
>PF00473 CRF: Corticotropin-releasing factor family; InterPro: IPR000187 Corticotropin-releasing factor (CRF), urotensin-I, urocortin and sauvagine form a family of related neuropeptides in vertebrates. The family can be grouped into 2 separate paralogous lineages, with urotensin-I, urocortin and sauvagine in one group and CRF forming the other group. Urocortin and sauvagine appear to represent orthologues of fish urotensin-I in mammals and amphibians, respectively. The peptides have a variety of physiological effects on stress and anxiety, vasoregulation, thermoregulation, growth and metabolism, metamorphosis and reproduction in various species, and are all released as preprohormones []. CRF [] is a hormone found mainly in the paraventricular nucleus of the mammalian hypothalamus that regulates the release of corticotropin (ACTH) from the pituitary gland. From here, CRF is transported to the anterior pituitary, stimulating adrenocorticotropic hormone (ACTH) release via CRF type 1 receptors, thereby activating the hypothalamo-pituitary-adrenocortical axis (HPA) and thus glucocorticoid release. CRF is evolutionary related to a number of other active peptides. Urocortin acts in vitro to stimulate the secretion of adrenocorticotropic hormone. Urotensin is found in the teleost caudal neurosecretory system and may play a role in osmoregulation and as a corticotropin-releasing factor. Urotensin-I is released from the urophysis of fish, and produces ACTH and subsequent cortisol release in vivo. The nonhormonal portion of the prohormone is thought to be the urotensin binding protein (urophysin). Sauvagine (P01144 from SWISSPROT), isolated from frog skin, has a potent hypotensive and diuretic effect.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3EHU_C 3EHT_B 2RMF_A 3N96_G.
Probab=27.08 E-value=66 Score=16.63 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=18.7
Q ss_pred cchHHHHHHHHHHHhcChhHHHHHh
Q 045076 118 PGTTMEFAVALVEQLYRKGKADEVS 142 (145)
Q Consensus 118 ~~~~~~~~l~li~~~~g~~~a~~va 142 (145)
|+=++++.+++++...-.+.|++..
T Consensus 2 PslSIdl~~~vLR~~l~~~~a~~~~ 26 (39)
T PF00473_consen 2 PSLSIDLTFHVLRQRLELERAERQM 26 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHHHHH
Confidence 4568899999999988888877643
No 233
>PRK00549 competence damage-inducible protein A; Provisional
Probab=27.03 E-value=98 Score=24.69 Aligned_cols=34 Identities=12% Similarity=0.006 Sum_probs=23.6
Q ss_pred CCccEEEEcCCccCh-hc-------------cccChHHHHHHHHHHHC
Q 045076 25 AVFDLIALPVCMPDA-TN-------------LKESKVLETIVKKQASN 58 (145)
Q Consensus 25 ~~~D~liipGG~~~~-~~-------------~~~~~~l~~~l~~~~~~ 58 (145)
.++|+||+.||.+.. .+ +..++...++|++++.+
T Consensus 58 ~~~DlVItTGGlGpt~dD~t~ea~a~~~g~~l~~~~~~~~~i~~~~~~ 105 (414)
T PRK00549 58 ERSDLIITTGGLGPTKDDLTKETVAKFLGRELVLDEEALAKIEDYFAK 105 (414)
T ss_pred cCCCEEEECCCCCCCCCccHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 479999999996321 11 23577888888887653
No 234
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=27.03 E-value=85 Score=19.81 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=16.4
Q ss_pred cchHHHHHHHHHHHhcChhHHHHHhCC
Q 045076 118 PGTTMEFAVALVEQLYRKGKADEVSGP 144 (145)
Q Consensus 118 ~~~~~~~~l~li~~~~g~~~a~~va~~ 144 (145)
.....+++..++++.+|++.|+++-+.
T Consensus 71 ~~gg~~~~~~lL~~alg~~~a~~il~~ 97 (108)
T PF14842_consen 71 VSGGRDFARRLLEKALGEEKAKEILDR 97 (108)
T ss_dssp -S-HHHHHHH-HHHHS---HHHHH---
T ss_pred ccChHHHHHHHHHHHCCHHHHHHHHHH
Confidence 456889999999999999999887543
No 235
>COG5298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.01 E-value=3.1e+02 Score=22.32 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=43.7
Q ss_pred EEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccc
Q 045076 12 KIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALGSWGL 78 (145)
Q Consensus 12 ~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agl 78 (145)
++.++..++.-+.+.+|.+|.-|- ..++--.+||.......+.|..|+.-+.-+++..++
T Consensus 61 t~~~~~~~ea~d~~~~~~~iylg~-------~k~~l~~k~ls~~s~~kk~Iv~igyN~~~~~~nt~l 120 (530)
T COG5298 61 TRVTIYAWEANDLSQASEIIYLGN-------KKDQLTDKWLSKLSESKKKIVYIGYNPPTFLANTKL 120 (530)
T ss_pred EEEEeeccccccccccceEEEeec-------cCCcchHHHHHHhhcccceEEEEecChHHhhhhccC
Confidence 455666666556678999998773 246667788888888889999998545556777665
No 236
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=26.96 E-value=1.5e+02 Score=20.87 Aligned_cols=20 Identities=5% Similarity=-0.124 Sum_probs=13.6
Q ss_pred HHHHHHHHHCCCeEEEEcch
Q 045076 49 ETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 49 ~~~l~~~~~~~~~v~aic~g 68 (145)
..+.......++++..++.|
T Consensus 89 ~~~~~~~~~~~~pv~~~g~g 108 (286)
T PF04230_consen 89 LRWLFLAKKLGKPVIILGQG 108 (286)
T ss_pred HHHHHHHHhcCCCeEEECce
Confidence 55566666778877777764
No 237
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=26.94 E-value=1.7e+02 Score=20.47 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=28.0
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+-|++|+.... ..++.+.+.++.+.++|.++.+++.
T Consensus 111 ~~Dv~I~iS~S------G~t~~~i~~~~~ak~~g~~iI~iT~ 146 (192)
T PRK00414 111 EGDVLLGISTS------GNSGNIIKAIEAARAKGMKVITLTG 146 (192)
T ss_pred CCCEEEEEeCC------CCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 45777776652 2577889999999999999999886
No 238
>COG1740 HyaA Ni,Fe-hydrogenase I small subunit [Energy production and conversion]
Probab=26.27 E-value=1.4e+02 Score=23.25 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=30.1
Q ss_pred ccEEEEcCCccChh----ccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 27 FDLIALPVCMPDAT----NLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 27 ~D~liipGG~~~~~----~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
-++|+|=|+.+..+ -....+...+++++..+..+.|.|+++
T Consensus 112 ~yILvVEG~v~~~~~G~y~~vgg~~~~e~l~~aA~~A~aIiAvGt 156 (355)
T COG1740 112 KYILVVEGAVPLGENGMYCIVGGEPFKEILRKAAEGASAIIAVGT 156 (355)
T ss_pred ceEEEEeCCccCCCCceEEEEcChhHHHHHHHHhhcCceEEEEec
Confidence 46677777753221 123478999999999999999999875
No 239
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=26.05 E-value=93 Score=21.81 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=26.5
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHH-------HCCCeEEEEcchh
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQA-------SNGRLYAAVCASP 69 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~-------~~~~~v~aic~g~ 69 (145)
.++|.|++... ...-.-.+.+..|+.+.. -.+|+++.+++++
T Consensus 68 ~~aD~ii~gsP---ty~g~~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g 116 (200)
T PRK03767 68 ADYDAIIFGTP---TRFGNMAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTG 116 (200)
T ss_pred HhCCEEEEEec---ccCCCchHHHHHHHHHhccccccCCccCCEEEEEEeCC
Confidence 37999888332 222234567888888763 2378888887753
No 240
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=25.92 E-value=37 Score=24.98 Aligned_cols=62 Identities=10% Similarity=0.120 Sum_probs=32.9
Q ss_pred CCCEEeccccccCCCCCCccEEEEcCCccChh--ccccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 9 HGVKIVADALVSDCRDAVFDLIALPVCMPDAT--NLKESKVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 9 ~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~--~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
.|+.+.+.....+.+ .+ =++.||++-+. .+...+++++++++..++.-+++-|+.|++.+|.
T Consensus 69 ~G~vv~~~g~~~~~~--~i--~v~~~~HP~Pd~~s~~aa~~il~~~~~~~~~dlvl~LiSGGgSALl~ 132 (238)
T PF13660_consen 69 GGLVVVPYGHESPLP--RI--EVLEGGHPLPDENSVRAARRILELARELTEDDLVLVLISGGGSALLE 132 (238)
T ss_dssp EEEEEEETT-----T--TS--EEEEE-SSS--HHHHHHHHHHHHHHCC--TTSEEEEEE-TTHHHHS-
T ss_pred CceEEeCCcccCCCC--CE--EEEECCCCCCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCChHHhhc
Confidence 467777765443322 33 35567765332 2344577888888887777788888888775444
No 241
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.77 E-value=1.3e+02 Score=22.53 Aligned_cols=34 Identities=9% Similarity=-0.047 Sum_probs=22.3
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
.++|++|+.||- + .+++.++ ....+.+|.+|-.|
T Consensus 56 ~~~d~vi~iGGD-G--------TlL~a~~-~~~~~~pi~gIn~G 89 (277)
T PRK03708 56 MDVDFIIAIGGD-G--------TILRIEH-KTKKDIPILGINMG 89 (277)
T ss_pred cCCCEEEEEeCc-H--------HHHHHHH-hcCCCCeEEEEeCC
Confidence 368999999993 3 2333444 44557788877765
No 242
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.72 E-value=1.3e+02 Score=22.81 Aligned_cols=40 Identities=5% Similarity=-0.128 Sum_probs=26.6
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
++|++|+-||- + .++.-.+.+...+.+|.+|-.|-.-+|+
T Consensus 64 ~~dlvi~lGGD-G--------T~L~aa~~~~~~~~PilGIN~G~lGFLt 103 (292)
T PRK01911 64 SADMVISIGGD-G--------TFLRTATYVGNSNIPILGINTGRLGFLA 103 (292)
T ss_pred CCCEEEEECCc-H--------HHHHHHHHhcCCCCCEEEEecCCCCccc
Confidence 58999999993 3 3445556666667888888775332344
No 243
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.46 E-value=1e+02 Score=23.36 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=26.9
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
++|++|+-||- + .+++..+.+...+.+|.+|-.|-.-+|+
T Consensus 64 ~~Dlvi~iGGD-G--------T~L~aa~~~~~~~~PilGIN~G~lGFLt 103 (287)
T PRK14077 64 ISDFLISLGGD-G--------TLISLCRKAAEYDKFVLGIHAGHLGFLT 103 (287)
T ss_pred CCCEEEEECCC-H--------HHHHHHHHhcCCCCcEEEEeCCCcccCC
Confidence 68999999993 2 4455566666667888888765332343
No 244
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.32 E-value=1.3e+02 Score=22.51 Aligned_cols=34 Identities=6% Similarity=-0.182 Sum_probs=23.6
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
++|++|+.||- + .+++..+.+...+.+|.+|-.|
T Consensus 42 ~~d~vi~iGGD-G--------T~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 42 RAQLAIVIGGD-G--------NMLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred CCCEEEEECCc-H--------HHHHHHHHhccCCCcEEEEeCC
Confidence 58999999993 2 3445555565667788887665
No 245
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=24.98 E-value=3.2e+02 Score=20.98 Aligned_cols=38 Identities=11% Similarity=-0.104 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCc
Q 045076 45 SKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGL 82 (145)
Q Consensus 45 ~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~ 82 (145)
+..+.+++++.+.+...+..|++.|..+=.-+.+|++|
T Consensus 38 ~~~~~~~~~~~f~~~d~iIfI~A~GIaVR~IAP~l~dK 75 (315)
T PRK05788 38 YEGFADAFEEAFGCYDALIFIMATGIAVRVIAPLLKDK 75 (315)
T ss_pred cCCHHHHHHHHHhcCCeEEEEEChHHHHHHhchhhhcc
Confidence 35688999999998888888887665444445666654
No 246
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.95 E-value=1.6e+02 Score=19.21 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=19.5
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.+|.+++..|- ..+...+++..++|+.|..++.
T Consensus 99 ~~d~ivLvSgD---------~Df~~~i~~lr~~G~~V~v~~~ 131 (149)
T cd06167 99 RIDTIVLVSGD---------SDFVPLVERLRELGKRVIVVGF 131 (149)
T ss_pred CCCEEEEEECC---------ccHHHHHHHHHHcCCEEEEEcc
Confidence 46777776662 1444445555555777777665
No 247
>PRK05569 flavodoxin; Provisional
Probab=24.85 E-value=71 Score=20.74 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=26.1
Q ss_pred CCccEEEEcCCccChhc-cccChHHHHHHHHHH---HCCCeEEEEcchh
Q 045076 25 AVFDLIALPVCMPDATN-LKESKVLETIVKKQA---SNGRLYAAVCASP 69 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~-~~~~~~l~~~l~~~~---~~~~~v~aic~g~ 69 (145)
.+||.|++..- .... ....+.+..|+.++. .+++.++.+++.+
T Consensus 47 ~~~d~iilgsP--ty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g 93 (141)
T PRK05569 47 LEADAVAFGSP--SMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYG 93 (141)
T ss_pred hhCCEEEEECC--CcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCC
Confidence 47999988432 1111 111245667777654 3688999888754
No 248
>PRK13937 phosphoheptose isomerase; Provisional
Probab=24.76 E-value=2e+02 Score=19.92 Aligned_cols=36 Identities=11% Similarity=-0.047 Sum_probs=27.1
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+-|++|+.... ..++.+.+.++...++|..+.+++.
T Consensus 106 ~~Dl~i~iS~s------G~t~~~~~~~~~ak~~g~~~I~iT~ 141 (188)
T PRK13937 106 PGDVLIGISTS------GNSPNVLAALEKARELGMKTIGLTG 141 (188)
T ss_pred CCCEEEEEeCC------CCcHHHHHHHHHHHHCCCeEEEEeC
Confidence 44777776652 2567888999999999988888875
No 249
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=24.69 E-value=82 Score=23.56 Aligned_cols=36 Identities=8% Similarity=-0.044 Sum_probs=24.8
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
.+++|++|+.||- + -+++..+.+.....+|.+|-.|
T Consensus 74 ~~~~D~ii~lGGD-G--------T~L~~~~~~~~~~~Pilgin~G 109 (285)
T PF01513_consen 74 EEGVDLIIVLGGD-G--------TFLRAARLFGDYDIPILGINTG 109 (285)
T ss_dssp CCCSSEEEEEESH-H--------HHHHHHHHCTTST-EEEEEESS
T ss_pred ccCCCEEEEECCC-H--------HHHHHHHHhccCCCcEEeecCC
Confidence 3589999999993 3 3444455555568899988875
No 250
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.41 E-value=1.4e+02 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=24.7
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
..+|++++.||- + .+++.++.+...+.++.+|-.
T Consensus 56 ~~~d~vi~~GGD-G--------T~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDLAIVLGGD-G--------TVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCEEEEECCc-H--------HHHHHHHHhccCCCCEEEEec
Confidence 368999999993 2 444556666667888888876
No 251
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.22 E-value=1.6e+02 Score=22.35 Aligned_cols=35 Identities=9% Similarity=-0.133 Sum_probs=24.1
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchh
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~ 69 (145)
++|++|+.||- + .+++..+.+...+.+|.+|-.|-
T Consensus 63 ~~d~vi~lGGD-G--------T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 63 QADLAIVVGGD-G--------NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred CCCEEEEECCc-H--------HHHHHHHHhcCCCCeEEEEECCC
Confidence 58999999993 3 34444555555567888887754
No 252
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=24.17 E-value=42 Score=28.07 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=13.2
Q ss_pred CccEEEEcCCccChhc
Q 045076 26 VFDLIALPVCMPDATN 41 (145)
Q Consensus 26 ~~D~liipGG~~~~~~ 41 (145)
.||+|+|-||+++.+.
T Consensus 4 ~~DVIVIGgGHAG~EA 19 (621)
T COG0445 4 EYDVIVIGGGHAGVEA 19 (621)
T ss_pred CCceEEECCCccchHH
Confidence 5999999999877654
No 253
>PRK13938 phosphoheptose isomerase; Provisional
Probab=24.05 E-value=2.3e+02 Score=20.04 Aligned_cols=37 Identities=14% Similarity=-0.058 Sum_probs=28.4
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.+-|++|+.... ...+.+++.++...++|..+.+++.
T Consensus 112 ~~~DllI~iS~S------G~t~~vi~a~~~Ak~~G~~vI~iT~ 148 (196)
T PRK13938 112 RPGDTLFAISTS------GNSMSVLRAAKTARELGVTVVAMTG 148 (196)
T ss_pred CCCCEEEEEcCC------CCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 356777776652 2577889999999999999988885
No 254
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=23.81 E-value=42 Score=23.13 Aligned_cols=67 Identities=13% Similarity=0.283 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHH
Q 045076 46 KVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFA 125 (145)
Q Consensus 46 ~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~ 125 (145)
+.+...-+.|.+.+..=++.|+ |-++++...||+..+- .+...+++++. .+||+--|.|....++..
T Consensus 86 ~~l~pvQ~Af~~~~a~QCGyCt-PG~ims~~aLl~~~~~--~~~s~~eI~~a----------l~GNlCRCTGY~~I~~Av 152 (159)
T PRK09908 86 GKLSHVQQAYAKSGAVQCGFCT-PGLIMATTAMLAKPRE--KPLTITEIRRG----------LAGNLCRCTGYQMIVNTV 152 (159)
T ss_pred CCCCHHHHHHHHcCCCcCCCCC-ccHHHHHHHHHHcCCC--CCCCHHHHHHH----------HcCCccCCCCCHHHHHHH
Confidence 3444444567788889999999 5679999999975320 12133444332 357777787776555543
No 255
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.77 E-value=1.5e+02 Score=22.74 Aligned_cols=35 Identities=6% Similarity=-0.114 Sum_probs=24.3
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchh
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~ 69 (145)
+.|++|+.||- + .++...+.+...+.+|.+|-.|-
T Consensus 72 ~~D~vi~lGGD-G--------T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 72 GCELVLVLGGD-G--------TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred CCCEEEEEcCC-H--------HHHHHHHHhccCCCcEEEEecCC
Confidence 57999999993 3 34455566666677888877653
No 256
>PLN02929 NADH kinase
Probab=23.27 E-value=2.5e+02 Score=21.53 Aligned_cols=34 Identities=12% Similarity=-0.074 Sum_probs=23.9
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
.+.|++|+.||- + .++...+.+ ..+.+|.+|-.|
T Consensus 63 ~~~Dlvi~lGGD-G--------T~L~aa~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 63 RDVDLVVAVGGD-G--------TLLQASHFL-DDSIPVLGVNSD 96 (301)
T ss_pred CCCCEEEEECCc-H--------HHHHHHHHc-CCCCcEEEEECC
Confidence 478999999993 3 333444445 667899998876
No 257
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=23.26 E-value=1.5e+02 Score=22.37 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=23.1
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchh
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASP 69 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~ 69 (145)
.+|++|+.||- + .+++.++.+...+.++.+|-.|-
T Consensus 63 ~~d~vi~~GGD-G--------t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 63 RADLAVVLGGD-G--------TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred CCCEEEEECCc-H--------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 58999999993 2 34445555555567777776653
No 258
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.16 E-value=1.5e+02 Score=22.63 Aligned_cols=40 Identities=8% Similarity=-0.041 Sum_probs=27.0
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHHHhh
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAVALG 74 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La 74 (145)
+.|++|+.||- + .+++..+.+...+.+|.+|-.|..-+|+
T Consensus 68 ~~Dlvi~iGGD-G--------TlL~aar~~~~~~iPilGIN~G~lGFLt 107 (305)
T PRK02649 68 SMKFAIVLGGD-G--------TVLSAARQLAPCGIPLLTINTGHLGFLT 107 (305)
T ss_pred CcCEEEEEeCc-H--------HHHHHHHHhcCCCCcEEEEeCCCCcccc
Confidence 57999999993 3 4445566666677888888775433343
No 259
>PLN02522 ATP citrate (pro-S)-lyase
Probab=22.94 E-value=1e+02 Score=26.09 Aligned_cols=93 Identities=14% Similarity=0.085 Sum_probs=49.3
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcchhHH-------HhhhccccCCceeecCcchhhhhcccC
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCASPAV-------ALGSWGLLKGLKATCYPSFMEQLAPAC 98 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g~~~-------~La~agll~g~~~t~~~~~~~~l~~~~ 98 (145)
+-.+|++-|=. + ..+.+++.+++++.. .+|+|.+++.|-.- ....+|-+-|....+.......|++.|
T Consensus 222 ~Tk~IvlygEi-G---g~~e~~f~ea~~~a~-~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aG 296 (608)
T PLN02522 222 QIKMIVVLGEL-G---GRDEYSLVEALKQGK-VSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAG 296 (608)
T ss_pred CCCEEEEEEec-C---chhHHHHHHHHHHhc-CCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCC
Confidence 44566554321 1 124567888888866 78999999986321 011123332222111122344455544
Q ss_pred ceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChh
Q 045076 99 AATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKG 136 (145)
Q Consensus 99 ~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~ 136 (145)
. +-........+++..+++++..+.
T Consensus 297 v-------------~vv~s~~El~~~~~~~~~~~~~~~ 321 (608)
T PLN02522 297 A-------------IVPTSFEALEAAIKETFEKLVEEG 321 (608)
T ss_pred C-------------eEeCCHHHHHHHHHHHHHHHHhCC
Confidence 3 334456677777777777776543
No 260
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=22.87 E-value=83 Score=21.22 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=39.7
Q ss_pred CCCeEEEEcchhHHHhhhccccCCceeec-CcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChh
Q 045076 58 NGRLYAAVCASPAVALGSWGLLKGLKATC-YPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKG 136 (145)
Q Consensus 58 ~~~~v~aic~g~~~~La~agll~g~~~t~-~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~ 136 (145)
.|..+++.+.|.+ + .+.-.+|.++.. |..+...+... ..|-|+++=++..-+.+++.++++.++..+
T Consensus 58 ~GIliCGtGiG~s--i-aANK~~GIRAA~~~d~~~A~~ar~---------hNnaNVL~lG~r~~g~~~a~~iv~~fL~t~ 125 (141)
T TIGR01118 58 LGIVIDAYGAGSF--M-VATKIKGMIAAEVSDERSAYMTRG---------HNNARMITVGAEIVGDELAKNIVKAFVEGK 125 (141)
T ss_pred eEEEEcCCCHhHh--h-hhhcCCCeEEEEECCHHHHHHHHH---------HcCCcEEEECccccCHHHHHHHHHHHHcCC
Confidence 4455666666432 2 334456777654 44444444222 245677777777778888888888876554
No 261
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=22.57 E-value=2.7e+02 Score=19.25 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=34.4
Q ss_pred eeeecCCCEEecc--c--c---ccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEE
Q 045076 4 RVDACHGVKIVAD--A--L---VSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAA 64 (145)
Q Consensus 4 ~v~~~~G~~i~~d--~--~---~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~a 64 (145)
.|.|..|....+. . . +.+....++|+|+| ... ++.. +.+.++++....+++.|..
T Consensus 47 ~I~s~~g~~~~~~~~~~~~~~~~~~~~~~~~dvI~I----DEa-QFf~-~~i~~l~~~~~~~g~~Vi~ 108 (176)
T PF00265_consen 47 KIVSHDGISLEAIVDPIDNLFEIIDILENDYDVIGI----DEA-QFFD-EQIVQLVEILANKGIPVIC 108 (176)
T ss_dssp EEEHTTSCEEEEESSEESSGGGGGGGCCTTCSEEEE----SSG-GGST-TTHHHHHHHHHHTT-EEEE
T ss_pred eEEecCCCcccccccchhhHHHHHHHhccCCCEEEE----ech-HhhH-HHHHHHHHHHHhCCCeEEE
Confidence 5778888888765 1 1 11111234899888 222 3444 7888999998888887743
No 262
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=22.50 E-value=1.5e+02 Score=20.00 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=39.0
Q ss_pred CCeEEEEcchhHHHhhhccccCCceeec-CcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhH
Q 045076 59 GRLYAAVCASPAVALGSWGLLKGLKATC-YPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGK 137 (145)
Q Consensus 59 ~~~v~aic~g~~~~La~agll~g~~~t~-~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~ 137 (145)
|..+++.+.| +--.+.-..|.++.. |..+...+... ..|.|+++=++..-+.++++.+++.++..+.
T Consensus 59 GIliCGtGiG---~siaANK~~GIraa~~~d~~~A~~ar~---------hNnaNVl~lGar~ig~~~a~~iv~~fL~t~f 126 (144)
T TIGR00689 59 GILICGTGIG---MSIAANKFKGIRAALCVDEYTAALARQ---------HNDANVLCLGSRVVGVELALSIVDAFLTTQF 126 (144)
T ss_pred EEEEcCCcHH---HHHHHhcCCCeEEEEECCHHHHHHHHH---------hcCCcEEEECccccCHHHHHHHHHHHHcCCC
Confidence 3445555553 233344466777664 33343333222 3466777777766788889999988876543
No 263
>PRK10670 hypothetical protein; Provisional
Probab=22.49 E-value=98 Score=21.05 Aligned_cols=42 Identities=14% Similarity=0.021 Sum_probs=24.8
Q ss_pred ecCCCEEeccccccCCCCCCccEEEEcCCccChhccccChHHHHHHH
Q 045076 7 ACHGVKIVADALVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVK 53 (145)
Q Consensus 7 ~~~G~~i~~d~~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~ 53 (145)
-..++++..|.++. ++|.+++.||..+..-....+.+.++++
T Consensus 108 l~~~v~v~vD~~l~-----~~~~i~~~aG~~~~~~~i~~~dl~~l~~ 149 (159)
T PRK10670 108 QKKRLPTVIDAPAQ-----EFATIYVSGGKRGLDIELAAGDLAKLLD 149 (159)
T ss_pred CCCCCeEEEehHHh-----cCCEEEEcCCCCCcEEEECHHHHHHHhC
Confidence 34456666666553 5788999888543322234556666543
No 264
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.47 E-value=1.9e+02 Score=21.57 Aligned_cols=41 Identities=7% Similarity=-0.058 Sum_probs=25.9
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHH--CCCeEEEEcchhHHHhh
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQAS--NGRLYAAVCASPAVALG 74 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~--~~~~v~aic~g~~~~La 74 (145)
.++|++|+-||- + .+++-++.+.. .+.++.+|-.|-.-+|+
T Consensus 34 ~~~Dlvi~iGGD-G--------T~L~a~~~~~~~~~~iPilGIN~G~lGFL~ 76 (265)
T PRK04885 34 KNPDIVISVGGD-G--------TLLSAFHRYENQLDKVRFVGVHTGHLGFYT 76 (265)
T ss_pred cCCCEEEEECCc-H--------HHHHHHHHhcccCCCCeEEEEeCCCceecc
Confidence 368999999993 3 34445555554 57788887765333344
No 265
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=22.32 E-value=2.1e+02 Score=17.96 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=28.4
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
+-|++|+..-. ...+++++.++.+.+++..+.+++..
T Consensus 43 ~~dl~I~iS~S------G~t~e~i~~~~~a~~~g~~iI~IT~~ 79 (119)
T cd05017 43 RKTLVIAVSYS------GNTEETLSAVEQAKERGAKIVAITSG 79 (119)
T ss_pred CCCEEEEEECC------CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56777776642 25778899999999999999988853
No 266
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=22.29 E-value=1.4e+02 Score=25.04 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=31.4
Q ss_pred cccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+++|+. +.|.||+-|.. +. ...+.+...|++..++|..|..|.-
T Consensus 157 ~~~Di~--~ad~Il~~G~N--p~--~~~p~~~~~l~~A~~rGakIIvIdP 200 (574)
T cd02767 157 SLEDFE--HTDLIFFIGQN--PG--TNHPRMLHYLREAKKRGGKIIVINP 200 (574)
T ss_pred CHHHHh--cCCEEEEEcCC--hh--hhcHHHHHHHHHHHHCCCEEEEECC
Confidence 344443 68999998863 32 3567888888888888877777753
No 267
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=22.12 E-value=1.3e+02 Score=24.02 Aligned_cols=33 Identities=6% Similarity=0.020 Sum_probs=22.4
Q ss_pred CCccEEEEcCCccCh-hc-------------cccChHHHHHHHHHHH
Q 045076 25 AVFDLIALPVCMPDA-TN-------------LKESKVLETIVKKQAS 57 (145)
Q Consensus 25 ~~~D~liipGG~~~~-~~-------------~~~~~~l~~~l~~~~~ 57 (145)
+++|+||+.||.+.. ++ +..|+...++|++++.
T Consensus 58 ~~~DlVIttGGlgpt~dD~t~eava~~~g~~l~~~~~~~~~i~~~~~ 104 (413)
T TIGR00200 58 ERADVLIFNGGLGPTSDDLTAETIATAKGEPLVLNEAWLKEIERYFH 104 (413)
T ss_pred cCCCEEEEcCCCCCCCcccHHHHHHHHhCCCcEECHHHHHHHHHHHH
Confidence 479999999996321 11 2347778888887654
No 268
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=22.02 E-value=3.3e+02 Score=19.97 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=36.5
Q ss_pred cCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCC-CeEEEEcchhHHHhhhccccCCceeecCcchhhhhcccC
Q 045076 20 SDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNG-RLYAAVCASPAVALGSWGLLKGLKATCYPSFMEQLAPAC 98 (145)
Q Consensus 20 ~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~-~~v~aic~g~~~~La~agll~g~~~t~~~~~~~~l~~~~ 98 (145)
+++ ++++|+|||+|-. . . -.+.-...|.++..+| +.+..+... . ....+....... ..+.+.+.|+..|
T Consensus 192 ~~I-P~~~d~Lvi~~P~-~--~--ls~~e~~~l~~yl~~GG~ll~~~d~~-~--~~~~~~~~~~~~-~~~~L~~lL~~~G 261 (271)
T PF09822_consen 192 EEI-PDDADVLVIAGPK-T--D--LSEEELYALDQYLMNGGKLLILLDPF-S--VELQGLWAGGAQ-RDSNLNDLLEEYG 261 (271)
T ss_pred ccc-CCCCCEEEEECCC-C--C--CCHHHHHHHHHHHHcCCeEEEEECCc-c--cccccccccccc-cccCHHHHHHHcC
Confidence 344 4689999998752 1 1 2444455556665554 555555542 1 121222111111 1556667776665
Q ss_pred cee
Q 045076 99 AAT 101 (145)
Q Consensus 99 ~~~ 101 (145)
..+
T Consensus 262 i~~ 264 (271)
T PF09822_consen 262 IRI 264 (271)
T ss_pred CEe
Confidence 544
No 269
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.73 E-value=1.1e+02 Score=23.09 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=36.7
Q ss_pred CccEEEEcCCccChhcc--ccChHHHHHHHHHHHCCCeEEEEcchhHHHhhhccccCCceeecCcchhh
Q 045076 26 VFDLIALPVCMPDATNL--KESKVLETIVKKQASNGRLYAAVCASPAVALGSWGLLKGLKATCYPSFME 92 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~--~~~~~l~~~l~~~~~~~~~v~aic~g~~~~La~agll~g~~~t~~~~~~~ 92 (145)
+||+|||.=|-++.++| ++++.+.+-|-++. -=+|.+|+|-.= ..-+.+..++++.|+....+
T Consensus 75 ~~Dviii~RGGGs~eDL~~FN~e~varai~~~~--~PvisaIGHe~D--~ti~D~vAd~ra~TPtaaAe 139 (319)
T PF02601_consen 75 DFDVIIIIRGGGSIEDLWAFNDEEVARAIAASP--IPVISAIGHETD--FTIADFVADLRAPTPTAAAE 139 (319)
T ss_pred cccEEEEecCCCChHHhcccChHHHHHHHHhCC--CCEEEecCCCCC--chHHHHHHHhhCCCHHHHHH
Confidence 69999887432455655 35677766654432 235667888432 22334455667777665444
No 270
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=21.72 E-value=86 Score=21.17 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=39.7
Q ss_pred CCCeEEEEcchhHHHhhhccccCCceeec-CcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChh
Q 045076 58 NGRLYAAVCASPAVALGSWGLLKGLKATC-YPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKG 136 (145)
Q Consensus 58 ~~~~v~aic~g~~~~La~agll~g~~~t~-~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~ 136 (145)
.|..|++.+.|.+ + .+.-.+|.++.. |..+...+... ..|-|+++=++-.-..+.+.++++.++..+
T Consensus 58 ~GIliCGTGiG~s--i-aANK~~GIRAA~~~d~~~A~~ar~---------hNnaNVL~lG~r~ig~~~a~~iv~~fL~t~ 125 (142)
T PRK08621 58 LGIVIDAYGAGSF--M-VATKIKGMVAAEVSDERSAYMTRG---------HNNARMITMGSEIVGDGLAKNIIKGFVEGK 125 (142)
T ss_pred eEEEEcCCChhhh--h-hhhcCCCeEEEEECCHHHHHHHHH---------HcCCcEEEECccccCHHHHHHHHHHHHcCC
Confidence 3455666666432 2 344456777654 44444444222 345677777777778888888888876544
No 271
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=21.54 E-value=1.6e+02 Score=19.88 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=38.1
Q ss_pred CCeEEEEcchhHHHhhhccccCCceeec-CcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChhH
Q 045076 59 GRLYAAVCASPAVALGSWGLLKGLKATC-YPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKGK 137 (145)
Q Consensus 59 ~~~v~aic~g~~~~La~agll~g~~~t~-~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~~ 137 (145)
|..+++.+.| +--.+.-..|.++.. |..+...+... ..|.|+++=++..-+.+++..+++.++..+.
T Consensus 60 GIliCGtGiG---~siaANK~~GIraa~~~d~~~A~~ar~---------hNnaNvl~lG~r~~g~~~a~~iv~~fl~t~f 127 (143)
T TIGR01120 60 GILICGTGIG---MSIAANKFAGIRAALCSEPYMAQMSRL---------HNDANVLCLGERVVGLELAKSIVDAWLGTQF 127 (143)
T ss_pred EEEEcCCcHH---HHHHHhcCCCeEEEEECCHHHHHHHHH---------hcCCcEEEECcceeCHHHHHHHHHHHHcCCC
Confidence 3444444443 233344467777664 33333333221 2466777766666778888888888775543
No 272
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=21.45 E-value=1.1e+02 Score=23.49 Aligned_cols=25 Identities=8% Similarity=0.211 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHH--CCCeEEEEcchhH
Q 045076 46 KVLETIVKKQAS--NGRLYAAVCASPA 70 (145)
Q Consensus 46 ~~l~~~l~~~~~--~~~~v~aic~g~~ 70 (145)
..+.+|+++..+ ++|.|+..|+||.
T Consensus 157 refP~~v~~~~~~~~~KkVvmyCTGGI 183 (308)
T COG1054 157 REFPAWVEENLDLLKDKKVVMYCTGGI 183 (308)
T ss_pred hhhHHHHHHHHHhccCCcEEEEcCCce
Confidence 356666665443 5789999999874
No 273
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=21.39 E-value=2e+02 Score=21.58 Aligned_cols=36 Identities=14% Similarity=-0.051 Sum_probs=25.6
Q ss_pred CCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 24 DAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 24 ~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
.+.+|++++-||- --++...+.+.+.+.+|.+|-.|
T Consensus 53 ~~~~d~ivvlGGD---------GtlL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 53 EEKADLIVVLGGD---------GTLLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred ccCceEEEEeCCc---------HHHHHHHHHhccCCCCEEEEeCC
Confidence 3578888888872 24556667777777788888775
No 274
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=21.31 E-value=95 Score=21.75 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=18.5
Q ss_pred EeCCeEecCCcchHHHHHHHHHHHhcCh
Q 045076 108 QDGKVVTTRGPGTTMEFAVALVEQLYRK 135 (145)
Q Consensus 108 ~dg~iiT~~g~~~~~~~~l~li~~~~g~ 135 (145)
..++++.|++..|+.| +.++++++.|+
T Consensus 40 ~G~Kvl~cGNGgSaad-AqHfaael~gR 66 (176)
T COG0279 40 NGNKVLACGNGGSAAD-AQHFAAELTGR 66 (176)
T ss_pred cCCEEEEECCCcchhh-HHHHHHHHhhH
Confidence 3467778888777776 56666666664
No 275
>PRK09939 putative oxidoreductase; Provisional
Probab=21.22 E-value=1.2e+02 Score=26.34 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=31.5
Q ss_pred cccCCCCCCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 18 LVSDCRDAVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 18 ~~~~~~~~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.++|+. +.|+||+-|.. +. ..++.+...|++..++|..|..|.-
T Consensus 202 ~l~Di~--~ad~Ili~G~N--p~--~~hP~~~~~l~~a~~rGakiIvIDP 245 (759)
T PRK09939 202 LLEDFE--KCDLVICIGHN--PG--TNHPRMLTSLRALVKRGAKMIAINP 245 (759)
T ss_pred CHHHHh--hCCEEEEeCCC--hH--HHHHHHHHHHHHHHHCCCEEEEECC
Confidence 444543 78999999973 32 2467788888888888877777763
No 276
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=21.17 E-value=1.3e+02 Score=21.00 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=26.7
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.++|.+++.|-. ...-...+.-|++|.+ ....++|-
T Consensus 107 ~~~DlvlfvG~~-----~~~~~~~l~~lk~f~~--~~~~~~~~ 142 (171)
T PRK00945 107 GNYDLVIFIGVT-----YYYASQGLSALKHFSP--LKTITIDR 142 (171)
T ss_pred CCcCEEEEecCC-----chhHHHHHHHHhhcCC--ceEEEecC
Confidence 379999998862 2245578888888876 67888885
No 277
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=20.90 E-value=82 Score=25.32 Aligned_cols=17 Identities=0% Similarity=-0.138 Sum_probs=12.3
Q ss_pred CCCCCccEEEEcCCccC
Q 045076 22 CRDAVFDLIALPVCMPD 38 (145)
Q Consensus 22 ~~~~~~D~liipGG~~~ 38 (145)
.+...||++||-||.++
T Consensus 35 ~~~~~~DViIVGaGPAG 51 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAG 51 (450)
T ss_pred cCCCCCeEEEECCCHHH
Confidence 33457999999888544
No 278
>PTZ00366 Surface antigen (SAG) superfamily; Provisional
Probab=20.78 E-value=22 Score=28.24 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHHCCCeEEEEcchhHHH
Q 045076 53 KKQASNGRLYAAVCASPAVA 72 (145)
Q Consensus 53 ~~~~~~~~~v~aic~g~~~~ 72 (145)
+.|..+.+-+.++|-||++|
T Consensus 12 ~g~~s~a~kl~avc~~gvll 31 (392)
T PTZ00366 12 GGFRSKARKLMAVCMGGVLL 31 (392)
T ss_pred cccccchhhhheeeeeeEEE
Confidence 34555667799999988753
No 279
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=20.45 E-value=58 Score=18.48 Aligned_cols=12 Identities=42% Similarity=0.792 Sum_probs=10.1
Q ss_pred HCCCeEEEEcch
Q 045076 57 SNGRLYAAVCAS 68 (145)
Q Consensus 57 ~~~~~v~aic~g 68 (145)
++++.++++|+|
T Consensus 8 ~~~~~i~GVcaG 19 (61)
T PF04024_consen 8 RDDRVIAGVCAG 19 (61)
T ss_pred CCCCEEeeeHHH
Confidence 357999999996
No 280
>PRK15482 transcriptional regulator MurR; Provisional
Probab=20.44 E-value=2.5e+02 Score=20.76 Aligned_cols=37 Identities=11% Similarity=-0.025 Sum_probs=29.5
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcch
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCAS 68 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~g 68 (145)
+-|++|+.... ...+.+.+.++.+.++|..+.+|+..
T Consensus 182 ~~Dv~i~iS~s------g~t~~~~~~~~~a~~~g~~iI~IT~~ 218 (285)
T PRK15482 182 KGDVQIAISYS------GSKKEIVLCAEAARKQGATVIAITSL 218 (285)
T ss_pred CCCEEEEEeCC------CCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45888876652 25778999999999999999999873
No 281
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=20.40 E-value=1.7e+02 Score=19.87 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=38.6
Q ss_pred CCeEEEEcchhHHHhhhccccCCceeec-CcchhhhhcccCceeccccEEEeCCeEecCCcchHHHHHHHHHHHhcChh
Q 045076 59 GRLYAAVCASPAVALGSWGLLKGLKATC-YPSFMEQLAPACAATVESRVQQDGKVVTTRGPGTTMEFAVALVEQLYRKG 136 (145)
Q Consensus 59 ~~~v~aic~g~~~~La~agll~g~~~t~-~~~~~~~l~~~~~~~~~~~~v~dg~iiT~~g~~~~~~~~l~li~~~~g~~ 136 (145)
|..+++.+.|. --.+.-..|.+++. |..+...+... ..|.|+++=++..-..+++.++++.++..+
T Consensus 62 GIliCGtGiG~---siaANK~~GIRAA~~~d~~~A~~ar~---------hNnaNVL~lG~r~ig~~~a~~iv~~fl~t~ 128 (148)
T PRK05571 62 GILICGTGIGM---SIAANKVKGIRAALCHDTYSAHLARE---------HNNANVLALGARVIGPELAKDIVDAFLATE 128 (148)
T ss_pred EEEEcCCcHHH---HHHHhcCCCeEEEEECCHHHHHHHHH---------hcCCcEEEECccccCHHHHHHHHHHHHcCC
Confidence 44455555532 23344567777764 44343333221 346677777777778888888888776543
No 282
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=20.30 E-value=1.8e+02 Score=20.00 Aligned_cols=36 Identities=11% Similarity=0.024 Sum_probs=26.3
Q ss_pred CCccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 25 AVFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 25 ~~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.++|.+++.|-. . ..-...+.-|++|. .....++|.
T Consensus 99 g~~DlvlfvG~~--~---y~~~~~ls~lk~f~--~~~~i~l~~ 134 (162)
T TIGR00315 99 GNYDLVLFLGII--Y---YYLSQMLSSLKHFS--HIVTIAIDK 134 (162)
T ss_pred CCcCEEEEeCCc--c---hHHHHHHHHHHhhc--CcEEEEecC
Confidence 479999998863 1 23457788888887 567888994
No 283
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=20.14 E-value=83 Score=21.86 Aligned_cols=44 Identities=9% Similarity=0.072 Sum_probs=21.5
Q ss_pred CCCccEEEEcCCccCh--hccccC-hHHHHHHHHHHHCCCeEEEEcc
Q 045076 24 DAVFDLIALPVCMPDA--TNLKES-KVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 24 ~~~~D~liipGG~~~~--~~~~~~-~~l~~~l~~~~~~~~~v~aic~ 67 (145)
.++.|++||||---+. .++... --.-++|.+....+....++|.
T Consensus 107 ~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~~~~~~igla~ 153 (182)
T PRK10333 107 LSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAH 153 (182)
T ss_pred cccCCEEEeCceEECCCCCcccCCcchHHHHHHHhcccCCcEEEEee
Confidence 4568999999851111 122221 1233455544322234566665
No 284
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.12 E-value=1.4e+02 Score=18.05 Aligned_cols=27 Identities=19% Similarity=0.015 Sum_probs=16.8
Q ss_pred cCCCEEeccccccCCCCCCccEEEEcCCc
Q 045076 8 CHGVKIVADALVSDCRDAVFDLIALPVCM 36 (145)
Q Consensus 8 ~~G~~i~~d~~~~~~~~~~~D~liipGG~ 36 (145)
+.|..+.+=..-.+ ...+|+++|.|-.
T Consensus 19 ~~GyeVv~l~~~~~--~~~~daiVvtG~~ 45 (80)
T PF03698_consen 19 EKGYEVVDLENEQD--LQNVDAIVVTGQD 45 (80)
T ss_pred HCCCEEEecCCccc--cCCcCEEEEECCC
Confidence 45666654332222 3489999999863
No 285
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.07 E-value=2.9e+02 Score=19.36 Aligned_cols=36 Identities=8% Similarity=-0.047 Sum_probs=27.1
Q ss_pred CccEEEEcCCccChhccccChHHHHHHHHHHHCCCeEEEEcc
Q 045076 26 VFDLIALPVCMPDATNLKESKVLETIVKKQASNGRLYAAVCA 67 (145)
Q Consensus 26 ~~D~liipGG~~~~~~~~~~~~l~~~l~~~~~~~~~v~aic~ 67 (145)
+=|++|+.... ..++.+.+.++.+.++|.++.+|+.
T Consensus 111 ~~Dv~i~iS~s------G~t~~~~~~~~~ak~~g~~iI~IT~ 146 (197)
T PRK13936 111 PGDVLLAISTS------GNSANVIQAIQAAHEREMHVVALTG 146 (197)
T ss_pred CCCEEEEEeCC------CCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 45777776652 2477888888888889988888886
No 286
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=20.03 E-value=1.9e+02 Score=19.90 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=22.8
Q ss_pred ccChHHHHHHHHHHHCCCeEEEEcchh
Q 045076 43 KESKVLETIVKKQASNGRLYAAVCASP 69 (145)
Q Consensus 43 ~~~~~l~~~l~~~~~~~~~v~aic~g~ 69 (145)
..-.++.+||+...++++.|..-|-||
T Consensus 89 ~~l~~~v~~i~~~~~~g~kVvVHC~~G 115 (180)
T COG2453 89 EDLDKIVDFIEEALSKGKKVVVHCQGG 115 (180)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 445678899999999999999999875
Done!