BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045079
(596 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KEC|B Chain B, Penicillin Acylase Mutant With Phenyl Proprionic Acid
Length = 557
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 160 PESNLLVPNLHGEIESLLKREGVNFA----PKVSLPKHGE---GVLLSSADDGRHHSSYG 212
P+ +++ L E+L KR G N + P ++L GV ++A++ RH + Y
Sbjct: 418 PQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAEYQ 477
Query: 213 SRGRKND 219
+RG +ND
Sbjct: 478 NRGTEND 484
>pdb|1H2G|B Chain B, Altered Substrate Specificity Mutant Of Penicillin Acylase
Length = 557
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 160 PESNLLVPNLHGEIESLLKREGVNFA----PKVSLPKHGE---GVLLSSADDGRHHSSYG 212
P+ +++ L E+L KR G N + P ++L GV ++A++ RH + Y
Sbjct: 418 PQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAEYQ 477
Query: 213 SRGRKND 219
+RG +ND
Sbjct: 478 NRGTEND 484
>pdb|1PNK|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNL|B Chain B, Penicillin Acylase Has A Single-amino-acid Catalytic
Centre
pdb|1PNM|B Chain B, Penicillin Acylase Has A Single-Amino-Acid Catalytic
Centre
pdb|1GM9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GK9|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1K7D|B Chain B, Penicillin Acylase With Phenyl Proprionic Acid
Length = 557
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 160 PESNLLVPNLHGEIESLLKREGVNFA----PKVSLPKHGE---GVLLSSADDGRHHSSYG 212
P+ +++ L E+L KR G N + P ++L GV ++A++ RH + Y
Sbjct: 418 PQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAEYQ 477
Query: 213 SRGRKND 219
+RG +ND
Sbjct: 478 NRGTEND 484
>pdb|1FXH|B Chain B, Mutant Of Penicillin Acylase Impaired In Catalysis With
Phenylacetic Acid In The Active Site
pdb|1FXV|B Chain B, Penicillin Acylase Mutant Impaired In Catalysis With
Penicillin G In The Active Site
Length = 557
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 160 PESNLLVPNLHGEIESLLKREGVNFA----PKVSLPKHGE---GVLLSSADDGRHHSSYG 212
P+ +++ L E+L KR G N + P ++L GV ++A++ RH + Y
Sbjct: 418 PQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAEYQ 477
Query: 213 SRGRKND 219
+RG +ND
Sbjct: 478 NRGTEND 484
>pdb|1GM8|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GM7|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
pdb|1GKF|B Chain B, Crystal Structures Of Penicillin Acylase Enzyme-Substrate
Complexes: Structural Insights Into The Catalytic
Mechanism
Length = 557
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 160 PESNLLVPNLHGEIESLLKREGVNFA----PKVSLPKHGE---GVLLSSADDGRHHSSYG 212
P+ +++ L E+L KR G N + P ++L GV ++A++ RH + Y
Sbjct: 418 PQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAEYQ 477
Query: 213 SRGRKND 219
+RG +ND
Sbjct: 478 NRGTEND 484
>pdb|1JX9|B Chain B, Penicillin Acylase, Mutant
pdb|1K5Q|B Chain B, Penicillin Acylase, Mutant Complexed With Paa
pdb|1K5S|B Chain B, Penicillin Acylase, Mutant Complexed With Ppa
Length = 557
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 160 PESNLLVPNLHGEIESLLKREGVNFA----PKVSLPKHGE---GVLLSSADDGRHHSSYG 212
P+ +++ L E+L KR G N + P ++L GV ++A++ RH + Y
Sbjct: 418 PQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAEYQ 477
Query: 213 SRGRKND 219
+RG +ND
Sbjct: 478 NRGTEND 484
>pdb|1AI4|B Chain B, Penicillin Acylase Complexed With
3,4-Dihydroxyphenylacetic Acid
pdb|1AI5|B Chain B, Penicillin Acylase Complexed With M-Nitrophenylacetic Acid
pdb|1AI6|B Chain B, Penicillin Acylase With P-Hydroxyphenylacetic Acid
pdb|1AI7|B Chain B, Penicillin Acylase Complexed With Phenol
pdb|1AJN|B Chain B, Penicillin Acylase Complexed With P-Nitrophenylacetic Acid
pdb|1AJP|B Chain B, Penicillin Acylase Complexed With
2,5-Dihydroxyphenylacetic Acid
pdb|1AJQ|B Chain B, Penicillin Acylase Complexed With Thiopheneacetic Acid
Length = 557
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 160 PESNLLVPNLHGEIESLLKREGVNFA----PKVSLPKHGE---GVLLSSADDGRHHSSYG 212
P+ +++ L E+L KR G N + P ++L GV ++A++ RH + Y
Sbjct: 418 PQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAEYQ 477
Query: 213 SRGRKND 219
+RG +ND
Sbjct: 478 NRGTEND 484
>pdb|1E3A|B Chain B, A Slow Processing Precursor Penicillin Acylase From
Escherichia Coli
Length = 560
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 160 PESNLLVPNLHGEIESLLKREGVNFA----PKVSLPKHGE---GVLLSSADDGRHHSSYG 212
P+ +++ L E+L KR G N + P ++L GV ++A++ RH + Y
Sbjct: 421 PQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAEYQ 480
Query: 213 SRGRKND 219
+RG +ND
Sbjct: 481 NRGTEND 487
>pdb|3TML|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
pdb|3TML|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Cenocepacia
Length = 288
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 12/97 (12%)
Query: 444 GPPMLRITGIE--LPQPGFRPA--------ERVEETGNRLKSYCERFNVPFEYNVIAQKW 493
GP +++ E L QP F A + +T RLK CE+ NVPF Y K
Sbjct: 1 GPGSMKLCDFEVGLDQPFFLIAGTCVVESEQMTIDTAGRLKEICEKLNVPFIYKSSYDKA 60
Query: 494 ETIRLEDFK-IDRDE-VTVVNCVHRMKNLPDDTVVDS 528
+ F+ + DE + +++ V R LP T V S
Sbjct: 61 NRSSGKSFRGLGMDEGLRILSEVKRQLGLPVLTDVHS 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,182,947
Number of Sequences: 62578
Number of extensions: 617393
Number of successful extensions: 1194
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1189
Number of HSP's gapped (non-prelim): 15
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)