Query 045079
Match_columns 596
No_of_seqs 235 out of 702
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:38:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 7.1E-84 1.5E-88 684.9 28.7 283 311-595 1-288 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 95.5 0.45 9.7E-06 48.3 15.1 129 392-550 34-164 (247)
3 PRK06202 hypothetical protein; 95.4 0.25 5.5E-06 49.3 12.6 145 378-550 22-166 (232)
4 TIGR02752 MenG_heptapren 2-hep 94.1 2.4 5.1E-05 41.9 15.8 122 406-557 35-157 (231)
5 PLN02233 ubiquinone biosynthes 93.5 5 0.00011 41.3 17.4 106 415-547 72-178 (261)
6 PF13847 Methyltransf_31: Meth 93.2 0.76 1.7E-05 42.7 10.0 132 415-577 2-134 (152)
7 PRK14103 trans-aconitate 2-met 92.7 0.93 2E-05 46.0 10.6 113 407-558 20-133 (255)
8 TIGR00740 methyltransferase, p 92.6 1.7 3.6E-05 43.6 12.2 107 416-550 53-160 (239)
9 TIGR02716 C20_methyl_CrtF C-20 91.8 1.6 3.5E-05 45.5 11.3 116 405-551 138-255 (306)
10 PF13649 Methyltransf_25: Meth 91.8 0.55 1.2E-05 40.6 6.6 97 420-543 1-99 (101)
11 PF01209 Ubie_methyltran: ubiE 91.0 1.5 3.3E-05 44.6 9.9 111 407-547 38-149 (233)
12 smart00138 MeTrc Methyltransfe 90.2 0.39 8.4E-06 49.6 4.8 42 415-456 98-141 (264)
13 PRK11207 tellurite resistance 88.9 3.3 7.2E-05 40.6 10.1 110 405-547 19-130 (197)
14 TIGR00477 tehB tellurite resis 88.9 3 6.6E-05 40.8 9.8 111 403-546 17-128 (195)
15 PF08241 Methyltransf_11: Meth 88.6 1.5 3.1E-05 36.1 6.3 93 421-548 1-94 (95)
16 COG2227 UbiG 2-polyprenyl-3-me 88.2 1.4 3E-05 45.6 7.0 100 415-548 58-158 (243)
17 PLN02336 phosphoethanolamine N 87.4 14 0.00029 41.1 14.7 112 406-550 256-368 (475)
18 PRK12335 tellurite resistance 87.0 4.3 9.2E-05 42.2 10.0 97 419-548 123-220 (287)
19 PRK05785 hypothetical protein; 87.0 28 0.0006 35.1 15.5 92 417-548 52-144 (226)
20 COG2226 UbiE Methylase involve 86.5 26 0.00056 36.3 15.1 135 392-558 26-163 (238)
21 TIGR01934 MenG_MenH_UbiE ubiqu 86.2 33 0.00071 33.1 16.0 112 406-549 29-141 (223)
22 PTZ00098 phosphoethanolamine N 85.3 14 0.0003 38.1 12.6 114 404-549 40-154 (263)
23 PLN02244 tocopherol O-methyltr 85.3 8.3 0.00018 41.3 11.3 100 416-548 118-220 (340)
24 TIGR03438 probable methyltrans 84.5 9.9 0.00021 40.0 11.3 109 417-548 64-175 (301)
25 PF09243 Rsm22: Mitochondrial 84.2 9.3 0.0002 39.8 10.8 138 399-568 12-156 (274)
26 PLN02585 magnesium protoporphy 83.6 9.7 0.00021 40.8 10.9 104 416-550 144-249 (315)
27 PLN02336 phosphoethanolamine N 83.3 11 0.00024 41.8 11.6 115 406-551 27-142 (475)
28 PRK11036 putative S-adenosyl-L 83.1 18 0.0004 36.7 12.2 112 407-549 36-147 (255)
29 PRK01683 trans-aconitate 2-met 82.8 14 0.00029 37.3 11.1 114 405-554 20-133 (258)
30 PRK08317 hypothetical protein; 82.7 41 0.00089 32.5 14.1 113 408-550 11-123 (241)
31 PF13489 Methyltransf_23: Meth 80.8 8.7 0.00019 34.9 8.1 97 414-553 20-118 (161)
32 PRK10258 biotin biosynthesis p 79.9 54 0.0012 32.9 14.2 43 405-456 31-73 (251)
33 PLN02396 hexaprenyldihydroxybe 78.9 7.7 0.00017 41.6 8.2 100 416-549 131-233 (322)
34 TIGR02072 BioC biotin biosynth 77.8 21 0.00044 34.7 10.2 110 406-550 21-134 (240)
35 TIGR02021 BchM-ChlM magnesium 77.5 23 0.0005 34.9 10.6 114 401-549 38-156 (219)
36 PF12847 Methyltransf_18: Meth 76.5 5.2 0.00011 34.5 5.1 106 419-550 4-110 (112)
37 PF00891 Methyltransf_2: O-met 76.4 18 0.00039 36.2 9.6 107 406-551 90-200 (241)
38 TIGR03587 Pse_Me-ase pseudamin 76.4 22 0.00047 35.4 10.0 100 419-553 46-145 (204)
39 PRK00216 ubiE ubiquinone/menaq 74.1 90 0.002 30.4 13.7 112 409-549 44-156 (239)
40 PF03291 Pox_MCEL: mRNA cappin 73.9 18 0.00038 39.1 9.3 137 398-553 40-189 (331)
41 PF02353 CMAS: Mycolic acid cy 73.7 16 0.00035 38.2 8.7 111 406-548 52-163 (273)
42 TIGR02081 metW methionine bios 72.7 37 0.0008 32.9 10.4 38 408-455 7-44 (194)
43 PRK15068 tRNA mo(5)U34 methylt 71.2 1.3E+02 0.0028 32.2 14.9 140 379-549 72-224 (322)
44 TIGR00138 gidB 16S rRNA methyl 71.1 36 0.00078 33.2 10.0 97 417-550 43-141 (181)
45 PF03848 TehB: Tellurite resis 67.3 83 0.0018 31.6 11.7 111 406-549 20-131 (192)
46 COG2230 Cfa Cyclopropane fatty 67.2 55 0.0012 34.9 10.9 107 408-546 64-171 (283)
47 PRK15001 SAM-dependent 23S rib 66.2 60 0.0013 35.8 11.4 110 419-552 231-341 (378)
48 PRK00121 trmB tRNA (guanine-N( 64.8 98 0.0021 30.5 11.7 129 416-572 40-173 (202)
49 PRK07580 Mg-protoporphyrin IX 64.6 79 0.0017 30.9 11.0 100 415-549 62-163 (230)
50 TIGR00091 tRNA (guanine-N(7)-) 63.7 41 0.00088 32.9 8.7 130 416-571 16-148 (194)
51 KOG4300 Predicted methyltransf 62.6 1.1E+02 0.0024 31.8 11.5 112 410-553 70-184 (252)
52 PF08242 Methyltransf_12: Meth 62.0 2.8 6.1E-05 35.7 0.2 30 421-457 1-30 (99)
53 TIGR03439 methyl_EasF probable 61.2 81 0.0018 34.0 11.1 148 407-577 69-234 (319)
54 TIGR00452 methyltransferase, p 59.8 82 0.0018 33.8 10.8 40 408-455 113-152 (314)
55 PRK11873 arsM arsenite S-adeno 59.6 82 0.0018 32.1 10.4 100 417-548 78-180 (272)
56 PRK00274 ksgA 16S ribosomal RN 58.5 33 0.00072 35.5 7.4 56 392-456 13-73 (272)
57 smart00828 PKS_MT Methyltransf 58.4 52 0.0011 32.3 8.5 99 419-548 2-101 (224)
58 PRK11705 cyclopropane fatty ac 56.6 91 0.002 34.2 10.7 107 407-549 158-265 (383)
59 PRK00107 gidB 16S rRNA methylt 55.9 1.7E+02 0.0038 28.8 11.6 109 417-567 46-156 (187)
60 PRK09489 rsmC 16S ribosomal RN 55.4 1.4E+02 0.0029 32.4 11.7 107 419-554 199-306 (342)
61 COG4106 Tam Trans-aconitate me 53.5 20 0.00044 37.2 4.7 109 414-559 28-137 (257)
62 PF13679 Methyltransf_32: Meth 51.4 42 0.0009 31.2 6.2 41 413-456 22-62 (141)
63 PRK06922 hypothetical protein; 50.9 86 0.0019 37.3 9.8 109 417-548 419-534 (677)
64 PRK10909 rsmD 16S rRNA m(2)G96 47.7 1.8E+02 0.004 29.0 10.4 107 418-556 55-164 (199)
65 PF13552 DUF4127: Protein of u 45.5 25 0.00055 40.0 4.4 78 516-596 78-163 (497)
66 PRK11088 rrmA 23S rRNA methylt 44.5 1E+02 0.0022 31.8 8.3 37 416-456 85-121 (272)
67 cd05197 GH4_glycoside_hydrolas 44.4 1.3E+02 0.0027 33.8 9.5 62 432-501 14-77 (425)
68 PRK13944 protein-L-isoaspartat 43.1 1.9E+02 0.0041 28.5 9.7 55 408-474 64-118 (205)
69 PF11020 DUF2610: Domain of un 42.5 27 0.00059 30.6 3.1 35 451-485 19-69 (82)
70 smart00650 rADc Ribosomal RNA 40.0 1.4E+02 0.0031 28.2 8.0 41 407-456 4-44 (169)
71 cd00635 PLPDE_III_YBL036c_like 39.8 2.1E+02 0.0046 28.5 9.6 71 416-490 117-198 (222)
72 PTZ00338 dimethyladenosine tra 39.5 76 0.0017 33.6 6.6 40 408-456 28-67 (294)
73 PRK03522 rumB 23S rRNA methylu 36.5 2.7E+02 0.0058 29.5 10.1 99 417-550 174-273 (315)
74 PLN02490 MPBQ/MSBQ methyltrans 36.1 2.3E+02 0.0049 30.9 9.7 100 416-549 113-213 (340)
75 TIGR02469 CbiT precorrin-6Y C5 35.2 1.1E+02 0.0024 26.4 6.0 32 418-456 21-52 (124)
76 KOG1270 Methyltransferases [Co 34.7 72 0.0016 34.0 5.4 98 420-548 93-194 (282)
77 PRK13255 thiopurine S-methyltr 34.2 2.5E+02 0.0054 28.4 9.0 117 416-560 37-168 (218)
78 PRK13168 rumA 23S rRNA m(5)U19 32.4 3.9E+02 0.0084 29.8 11.0 101 415-550 296-399 (443)
79 COG2242 CobL Precorrin-6B meth 32.1 67 0.0014 32.3 4.5 53 409-477 27-82 (187)
80 PRK01544 bifunctional N5-gluta 31.8 8.3E+02 0.018 27.9 13.7 150 311-473 5-182 (506)
81 PF05175 MTS: Methyltransferas 31.3 1.9E+02 0.0042 27.5 7.4 122 403-552 18-141 (170)
82 KOG2076 RNA polymerase III tra 31.1 1.2E+02 0.0026 37.1 6.9 33 307-339 135-168 (895)
83 PRK14968 putative methyltransf 31.0 4.4E+02 0.0096 24.6 10.9 43 416-473 23-65 (188)
84 TIGR03534 RF_mod_PrmC protein- 30.3 1.7E+02 0.0038 28.8 7.2 79 416-517 87-166 (251)
85 TIGR02129 hisA_euk phosphoribo 30.1 58 0.0013 34.1 3.8 27 413-443 50-76 (253)
86 TIGR01716 RGG_Cterm transcript 29.4 1.4E+02 0.003 29.2 6.3 55 311-365 127-182 (220)
87 PRK05134 bifunctional 3-demeth 29.3 4.3E+02 0.0092 26.0 9.8 103 414-549 46-149 (233)
88 cd05296 GH4_P_beta_glucosidase 29.3 2.5E+02 0.0054 31.4 8.8 59 432-497 14-74 (419)
89 smart00857 Resolvase Resolvase 29.1 4.4E+02 0.0095 23.9 9.2 102 466-576 17-127 (148)
90 TIGR00755 ksgA dimethyladenosi 28.1 3.9E+02 0.0084 27.2 9.4 41 407-456 20-60 (253)
91 TIGR00406 prmA ribosomal prote 27.7 6.1E+02 0.013 26.5 11.0 67 402-486 143-211 (288)
92 PF07522 DRMBL: DNA repair met 27.5 2.5E+02 0.0053 25.1 7.0 37 505-551 71-107 (110)
93 COG2265 TrmA SAM-dependent met 27.4 4E+02 0.0088 30.0 10.1 123 414-578 291-424 (432)
94 PRK08287 cobalt-precorrin-6Y C 27.3 5.6E+02 0.012 24.5 10.9 34 416-456 31-64 (187)
95 PRK14896 ksgA 16S ribosomal RN 27.2 2.6E+02 0.0057 28.6 8.0 44 404-456 13-60 (258)
96 PRK03646 dadX alanine racemase 27.0 1.2E+02 0.0025 33.0 5.6 36 416-455 117-157 (355)
97 PRK00771 signal recognition pa 26.9 5.4E+02 0.012 29.1 10.9 39 326-364 40-83 (437)
98 PF12169 DNA_pol3_gamma3: DNA 26.6 1.1E+02 0.0023 28.1 4.6 83 313-395 16-108 (143)
99 TIGR03180 UraD_2 OHCU decarbox 26.1 2.6E+02 0.0057 27.2 7.3 100 379-488 5-115 (158)
100 TIGR02085 meth_trns_rumB 23S r 26.1 7.5E+02 0.016 26.9 11.7 97 419-550 236-333 (374)
101 PF02056 Glyco_hydro_4: Family 26.0 2.5E+02 0.0054 28.0 7.3 120 428-570 9-156 (183)
102 TIGR00492 alr alanine racemase 25.3 2.8E+02 0.006 29.8 8.1 72 416-491 120-202 (367)
103 TIGR01983 UbiG ubiquinone bios 25.2 6.3E+02 0.014 24.5 10.3 101 416-549 45-147 (224)
104 KOG2324 Prolyl-tRNA synthetase 24.6 82 0.0018 35.0 3.8 38 469-507 375-413 (457)
105 TIGR03840 TMPT_Se_Te thiopurin 23.8 5.9E+02 0.013 25.6 9.6 32 416-456 34-65 (213)
106 PRK07004 replicative DNA helic 23.6 1.7E+02 0.0037 33.0 6.3 70 416-485 296-368 (460)
107 TIGR03164 UHCUDC OHCU decarbox 23.4 3.4E+02 0.0075 26.3 7.6 99 380-488 3-115 (157)
108 TIGR00479 rumA 23S rRNA (uraci 23.3 8.8E+02 0.019 26.7 11.7 112 418-568 294-408 (431)
109 PF07521 RMMBL: RNA-metabolisi 23.2 1.8E+02 0.0038 22.0 4.4 37 507-549 1-38 (43)
110 COG1341 Predicted GTPase or GT 22.9 6.2E+02 0.013 28.5 10.2 144 400-591 90-242 (398)
111 PRK09195 gatY tagatose-bisphos 22.5 3.8E+02 0.0083 28.5 8.3 104 380-486 6-133 (284)
112 PRK10507 bifunctional glutathi 22.5 2.8E+02 0.0061 32.8 7.9 86 423-519 353-443 (619)
113 PLN02446 (5-phosphoribosyl)-5- 22.4 90 0.002 32.9 3.6 27 413-440 55-81 (262)
114 cd02440 AdoMet_MTases S-adenos 22.3 3.9E+02 0.0084 20.9 9.0 30 419-456 1-30 (107)
115 PLN03075 nicotianamine synthas 22.3 7.5E+02 0.016 26.6 10.5 107 419-551 126-233 (296)
116 TIGR01858 tag_bisphos_ald clas 22.3 4.1E+02 0.0089 28.3 8.5 103 381-486 5-131 (282)
117 TIGR03183 DNA_S_dndC putative 21.4 2.3E+02 0.0049 32.2 6.7 81 406-490 3-91 (447)
118 PRK07402 precorrin-6B methylas 21.4 2.6E+02 0.0057 27.0 6.5 45 404-455 28-72 (196)
119 cd06811 PLPDE_III_yhfX_like Ty 21.3 8.7E+02 0.019 26.6 11.1 33 417-453 147-190 (382)
120 PRK07998 gatY putative fructos 20.9 3.7E+02 0.008 28.7 7.8 95 393-489 19-138 (283)
121 PF02310 B12-binding: B12 bind 20.5 77 0.0017 27.9 2.3 69 471-549 18-86 (121)
122 PF02527 GidB: rRNA small subu 20.4 1.4E+02 0.0031 29.5 4.4 59 419-495 51-109 (184)
123 PHA03411 putative methyltransf 20.3 1E+02 0.0022 32.9 3.5 62 387-456 34-97 (279)
124 TIGR01626 ytfJ_HI0045 conserve 20.2 1.8E+02 0.0039 29.0 5.0 87 415-513 58-155 (184)
125 TIGR00563 rsmB ribosomal RNA s 20.2 1.1E+03 0.024 26.0 11.8 67 403-486 225-291 (426)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=7.1e-84 Score=684.87 Aligned_cols=283 Identities=42% Similarity=0.698 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHcCCCCCCcccC-CCCCC---hHHHHHH
Q 045079 311 LRGLLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTPMHTHI-SCRTS---AADILKA 386 (596)
Q Consensus 311 L~~LLl~CAqAVa~~d~~~A~~lL~~I~q~sSp~GD~~QRLA~yFaeAL~aRL~gtg~~~y~~l-s~~~s---~~d~lkA 386 (596)
|++||++||+||+.||...|+.+|++|++++||+||++||||+||++||.+||.+++++.|..+ ....+ ..+.++|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999877 33333 6788999
Q ss_pred HHHHhhcccchhhhHHHHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHH
Q 045079 387 YQMSLSAWPFIRMSYLFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERV 466 (596)
Q Consensus 387 y~lf~~~~Pf~kfa~~~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~l 466 (596)
|++|++.|||.||+||||||||+||++|+++||||||||++|+|||+|||+||.|++|||+||||||+.|.++ +...+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l 158 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL 158 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887 68899
Q ss_pred HHHHHHHHHHHhhcCCcEEEEee-cccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcE
Q 045079 467 EETGNRLKSYCERFNVPFEYNVI-AQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDV 545 (596)
Q Consensus 467 eetG~rL~~~A~~~gVPFeF~~I-a~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~V 545 (596)
++||+||.+||+++||||||++| ..+||++++++|++++||+|||||+|+||||+|++....+||+.||+.||+|+|+|
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 99999999999999999999996 68999999999999999999999999999999998888889999999999999999
Q ss_pred EEeeeecCCCCcchhHHHHHHHHHHHHHHhhhhhcCCCCCCHHHHhhccc
Q 045079 546 FIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFERE 595 (596)
Q Consensus 546 fv~~e~n~~~nsp~F~~RF~EAL~~YSAlFDsLdat~pr~~~eR~~iE~e 595 (596)
||++|+|++||+|+|++||.|||+||+|+|||||+++|+++++|+.+|+.
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~ 288 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERL 288 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=95.51 E-value=0.45 Score=48.30 Aligned_cols=129 Identities=15% Similarity=0.211 Sum_probs=70.7
Q ss_pred hcccchhhhHHHHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHH
Q 045079 392 SAWPFIRMSYLFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGN 471 (596)
Q Consensus 392 ~~~Pf~kfa~~~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~ 471 (596)
...|.....+-.+...+-..+. ..-+|+|+|.+.|.-...|.+.+. .|..++||||.. ...++.+.+
T Consensus 34 ~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~~-----~~~~~v~gvD~S------~~ml~~A~~ 100 (247)
T PRK15451 34 RSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNIH-----HDNCKIIAIDNS------PAMIERCRR 100 (247)
T ss_pred hcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhcC-----CCCCeEEEEeCC------HHHHHHHHH
Confidence 3456666665555543322222 335799999999864333333221 246899999973 345666666
Q ss_pred HHHHHHhhcCCcEEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcE-EEee
Q 045079 472 RLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDV-FIHG 549 (596)
Q Consensus 472 rL~~~A~~~gVPFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~V-fv~~ 549 (596)
++.++.. ...++|. ...++++.. ....+++ |.+.|||+.++ -+..+|+.| +.|+|.- ++++
T Consensus 101 ~~~~~~~--~~~v~~~--~~d~~~~~~-----~~~D~vv--~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 101 HIDAYKA--PTPVDVI--EGDIRDIAI-----ENASMVV--LNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred HHHhcCC--CCCeEEE--eCChhhCCC-----CCCCEEe--hhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence 5544321 1134443 333333322 2223433 55778888753 245677776 6679975 4555
Q ss_pred e
Q 045079 550 I 550 (596)
Q Consensus 550 e 550 (596)
+
T Consensus 164 e 164 (247)
T PRK15451 164 E 164 (247)
T ss_pred E
Confidence 5
No 3
>PRK06202 hypothetical protein; Provisional
Probab=95.36 E-value=0.25 Score=49.26 Aligned_cols=145 Identities=16% Similarity=0.146 Sum_probs=74.0
Q ss_pred CChHHHHHHHHHHhhcccchhhhHHHHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 045079 378 TSAADILKAYQMSLSAWPFIRMSYLFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQ 457 (596)
Q Consensus 378 ~s~~d~lkAy~lf~~~~Pf~kfa~~~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq 457 (596)
..++++-+.|+.|-....+..--+-+-.+.+...+...+...|+|+|.+.|. +...|.....+ .| |..+|||||..
T Consensus 22 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~l~~~~~~~iLDlGcG~G~-~~~~L~~~~~~-~g-~~~~v~gvD~s- 97 (232)
T PRK06202 22 CDPARLDRTYAGFRRVNRIVAGWRGLYRRLLRPALSADRPLTLLDIGCGGGD-LAIDLARWARR-DG-LRLEVTAIDPD- 97 (232)
T ss_pred cCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcCCCCCcEEEEeccCCCH-HHHHHHHHHHh-CC-CCcEEEEEcCC-
Confidence 3455666666655544333321112222333333333456789999999996 43333322221 12 45799999973
Q ss_pred CCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHH
Q 045079 458 PGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDL 537 (596)
Q Consensus 458 ~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~ 537 (596)
.+.++.+.++. ..-|+.+.. +. .+++...++.+=+|-|.+.|||+.|+. ...+|+.
T Consensus 98 -----~~~l~~a~~~~----~~~~~~~~~--~~-------~~~l~~~~~~fD~V~~~~~lhh~~d~~------~~~~l~~ 153 (232)
T PRK06202 98 -----PRAVAFARANP----RRPGVTFRQ--AV-------SDELVAEGERFDVVTSNHFLHHLDDAE------VVRLLAD 153 (232)
T ss_pred -----HHHHHHHHhcc----ccCCCeEEE--Ee-------cccccccCCCccEEEECCeeecCChHH------HHHHHHH
Confidence 23344333222 122454433 21 111211233444555667799998742 3468888
Q ss_pred HHhhCCcEEEeee
Q 045079 538 IKRINPDVFIHGI 550 (596)
Q Consensus 538 Ir~L~P~Vfv~~e 550 (596)
+.++--.++++.+
T Consensus 154 ~~r~~~~~~~i~d 166 (232)
T PRK06202 154 SAALARRLVLHND 166 (232)
T ss_pred HHHhcCeeEEEec
Confidence 8766545555543
No 4
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=94.12 E-value=2.4 Score=41.94 Aligned_cols=122 Identities=10% Similarity=0.078 Sum_probs=62.4
Q ss_pred HHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045079 406 QTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 406 qaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFe 485 (596)
+.++..+.=...-+|+|+|.+.|.-. ..|+.+ .+|..++||||.. ...++.+.+++. ..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~----~~la~~--~~~~~~v~gvD~s------~~~~~~a~~~~~----~~~~~-~ 97 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWS----IALAEA--VGPEGHVIGLDFS------ENMLSVGRQKVK----DAGLH-N 97 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHH----HHHHHH--hCCCCEEEEEECC------HHHHHHHHHHHH----hcCCC-c
Confidence 44555554344468999999998732 233332 1245689999973 244555544443 23433 1
Q ss_pred EEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHH-HHhhCCcEEEeeeecCCCCc
Q 045079 486 YNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDL-IKRINPDVFIHGISNGTYNA 557 (596)
Q Consensus 486 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~-Ir~L~P~Vfv~~e~n~~~ns 557 (596)
...+....+++... ...=++|+ +.+.+|++.+ + ..+|+. .|.|+|.-.++....+..+.
T Consensus 98 v~~~~~d~~~~~~~---~~~fD~V~--~~~~l~~~~~-------~-~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 98 VELVHGNAMELPFD---DNSFDYVT--IGFGLRNVPD-------Y-MQVLREMYRVVKPGGKVVCLETSQPTI 157 (231)
T ss_pred eEEEEechhcCCCC---CCCccEEE--EecccccCCC-------H-HHHHHHHHHHcCcCeEEEEEECCCCCC
Confidence 22222223332211 11113343 4456777654 2 356665 47789987655444443333
No 5
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.54 E-value=5 Score=41.28 Aligned_cols=106 Identities=13% Similarity=0.171 Sum_probs=60.2
Q ss_pred cCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccc
Q 045079 415 ATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWE 494 (596)
Q Consensus 415 ~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E 494 (596)
...-+|+|+|.+.|. +...|+.+- +|.-+|||||.. .+.++.+.++....++...-..+|.. ...+
T Consensus 72 ~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S------~~ml~~A~~r~~~~~~~~~~~i~~~~--~d~~ 137 (261)
T PLN02233 72 KMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFS------SEQLAVAASRQELKAKSCYKNIEWIE--GDAT 137 (261)
T ss_pred CCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECC------HHHHHHHHHHhhhhhhccCCCeEEEE--cccc
Confidence 445689999999997 334455442 234589999973 34566665554322222222233322 2233
Q ss_pred ccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEE
Q 045079 495 TIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFI 547 (596)
Q Consensus 495 ~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv 547 (596)
++....+.+=+|-|.+.|||+.| | ..+|+.+ |-|+|.-.+
T Consensus 138 -----~lp~~~~sfD~V~~~~~l~~~~d-------~-~~~l~ei~rvLkpGG~l 178 (261)
T PLN02233 138 -----DLPFDDCYFDAITMGYGLRNVVD-------R-LKAMQEMYRVLKPGSRV 178 (261)
T ss_pred -----cCCCCCCCEeEEEEecccccCCC-------H-HHHHHHHHHHcCcCcEE
Confidence 33333344556667788998874 3 3455554 778998543
No 6
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=93.24 E-value=0.76 Score=42.66 Aligned_cols=132 Identities=17% Similarity=0.322 Sum_probs=69.6
Q ss_pred cCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccc
Q 045079 415 ATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQKW 493 (596)
Q Consensus 415 ~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~~ 493 (596)
.+..+|+|+|.+.|..=-.|.+.+ .|..+|||||.. .+.++ +..+.+++.+++ .+|. ...+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s------~~~i~----~a~~~~~~~~~~ni~~~--~~d~ 63 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDIS------EEMIE----YAKKRAKELGLDNIEFI--QGDI 63 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESS------HHHHH----HHHHHHHHTTSTTEEEE--ESBT
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECc------HHHHH----HhhcccccccccccceE--Eeeh
Confidence 356799999999995433333322 124569999973 23343 445567778887 5554 3445
Q ss_pred cccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeeeecCCCCcchhHHHHHHHHHHHHH
Q 045079 494 ETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSA 573 (596)
Q Consensus 494 E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e~n~~~nsp~F~~RF~EAL~~YSA 573 (596)
+++.-. +. +.+=+|.+...+||+.+ +...+-+.++.++|+..+++..-. +. ........+-..+|..
T Consensus 64 ~~l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i~~~~~-~~-~~~~~~~~~~~~~~~~ 130 (152)
T PF13847_consen 64 EDLPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILIISDPN-HN-DELPEQLEELMNLYSE 130 (152)
T ss_dssp TCGCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEEEEEEE-HS-HHHHHHHHHHHHHHHH
T ss_pred hccccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEEEEECC-hH-HHHHHHHHHHHHHHHH
Confidence 544322 22 33334444444566664 233344446777988765543222 11 1222555555555555
Q ss_pred Hhhh
Q 045079 574 MFDI 577 (596)
Q Consensus 574 lFDs 577 (596)
...+
T Consensus 131 ~~~~ 134 (152)
T PF13847_consen 131 VWSM 134 (152)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 5443
No 7
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=92.74 E-value=0.93 Score=45.95 Aligned_cols=113 Identities=18% Similarity=0.252 Sum_probs=64.5
Q ss_pred HHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEE
Q 045079 407 TIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEY 486 (596)
Q Consensus 407 aIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF 486 (596)
.+++.+.-...-+|+|+|.+.|. +...|+.+- |..++||||.. ...++ .|+..++.|.
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s------~~~~~--------~a~~~~~~~~- 77 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSS------PEMVA--------AARERGVDAR- 77 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHH--------HHHhcCCcEE-
Confidence 45666654556789999999993 455666653 34689999973 22233 3344455442
Q ss_pred EeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHH-HHhhCCcEEEeeeecCCCCcc
Q 045079 487 NVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDL-IKRINPDVFIHGISNGTYNAP 558 (596)
Q Consensus 487 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~-Ir~L~P~Vfv~~e~n~~~nsp 558 (596)
....+++. ..+.+=+|-|.+.|||+.| + ..+|+. .+.|+|.-.++....++...+
T Consensus 78 ---~~d~~~~~------~~~~fD~v~~~~~l~~~~d-------~-~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 133 (255)
T PRK14103 78 ---TGDVRDWK------PKPDTDVVVSNAALQWVPE-------H-ADLLVRWVDELAPGSWIAVQVPGNFDAP 133 (255)
T ss_pred ---EcChhhCC------CCCCceEEEEehhhhhCCC-------H-HHHHHHHHHhCCCCcEEEEEcCCCcCCh
Confidence 12222221 1223444555667788875 3 345554 577899987665544444444
No 8
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=92.63 E-value=1.7 Score=43.59 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=61.8
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWET 495 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~ 495 (596)
..-+|+|+|.+.|. ++..|+++- ..|..++||||+. .+.++.+.+++.++.. +..++|. ...+++
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~-~~p~~~v~gvD~s------~~ml~~a~~~~~~~~~--~~~v~~~--~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNI-NQPNVKIIGIDNS------QPMVERCRQHIAAYHS--EIPVEIL--CNDIRH 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhc-CCCCCeEEEEeCC------HHHHHHHHHHHHhcCC--CCCeEEE--ECChhh
Confidence 44589999999984 444444432 1256899999973 2456666666544322 2233442 333443
Q ss_pred cCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEeee
Q 045079 496 IRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHGI 550 (596)
Q Consensus 496 i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~e 550 (596)
+... ... +|-|.+.|||+.++. +..+|+.| |.|+|.-.++..
T Consensus 118 ~~~~-----~~d--~v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 118 VEIK-----NAS--MVILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CCCC-----CCC--EEeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEEe
Confidence 3322 222 345677888886531 44677766 667998866543
No 9
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=91.82 E-value=1.6 Score=45.46 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=63.6
Q ss_pred hHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcE
Q 045079 405 NQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPF 484 (596)
Q Consensus 405 NqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPF 484 (596)
.+.|++.+.-...-+|+|+|-+.|. +...++++. |.+++|+++.| ..++.+.++ ++..|+.=
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~-------~~~~~a~~~----~~~~gl~~ 199 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLP-------GAIDLVNEN----AAEKGVAD 199 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecH-------HHHHHHHHH----HHhCCccc
Confidence 5667777765566799999999983 444555543 66899999963 335544443 44445431
Q ss_pred EEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcE-EEeeee
Q 045079 485 EYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDV-FIHGIS 551 (596)
Q Consensus 485 eF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~V-fv~~e~ 551 (596)
.++.+.....+. ++ ...+++++ ...||+..++. ...+|+.+ +.|+|.- +++.+.
T Consensus 200 rv~~~~~d~~~~---~~--~~~D~v~~--~~~lh~~~~~~------~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 200 RMRGIAVDIYKE---SY--PEADAVLF--CRILYSANEQL------STIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred eEEEEecCccCC---CC--CCCCEEEe--EhhhhcCChHH------HHHHHHHHHHhcCCCCEEEEEEe
Confidence 222233222111 11 12234333 23456655431 24677766 6789965 444543
No 10
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=91.79 E-value=0.55 Score=40.58 Aligned_cols=97 Identities=21% Similarity=0.364 Sum_probs=52.8
Q ss_pred EEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCcc
Q 045079 420 IIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLE 499 (596)
Q Consensus 420 IIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~e 499 (596)
|+|+|.+.|..=..|.+.+ .. | |..++||||.. .+.++.+.++..+ .+++.+|.. ..+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~--~~-~-~~~~~~gvD~s------~~~l~~~~~~~~~----~~~~~~~~~--~D~~~---- 60 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF--DA-G-PSSRVIGVDIS------PEMLELAKKRFSE----DGPKVRFVQ--ADARD---- 60 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-------HHHHHHHHHHSHH----TTTTSEEEE--SCTTC----
T ss_pred CEEeecCCcHHHHHHHHHh--hh-c-ccceEEEEECC------HHHHHHHHHhchh----cCCceEEEE--CCHhH----
Confidence 7999999997766676666 22 2 56999999973 3445544433333 456666632 22322
Q ss_pred cccccCCCeEEEEeecc-ccCCCCCCcCCCCcHHHHHHHHHhh-CC
Q 045079 500 DFKIDRDEVTVVNCVHR-MKNLPDDTVVDSSPRDAVLDLIKRI-NP 543 (596)
Q Consensus 500 dL~i~~dE~LaVN~~f~-Lh~L~Desv~~~spRd~vL~~Ir~L-~P 543 (596)
|....+.+=+|-|.+. ++|+.++. +..+|+.+.++ +|
T Consensus 61 -l~~~~~~~D~v~~~~~~~~~~~~~~------~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 61 -LPFSDGKFDLVVCSGLSLHHLSPEE------LEALLRRIARLLRP 99 (101)
T ss_dssp -HHHHSSSEEEEEE-TTGGGGSSHHH------HHHHHHHHHHTEEE
T ss_pred -CcccCCCeeEEEEcCCccCCCCHHH------HHHHHHHHHHHhCC
Confidence 3333344545555444 88876542 45677776543 44
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=91.05 E-value=1.5 Score=44.64 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=60.9
Q ss_pred HHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEE
Q 045079 407 TIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEY 486 (596)
Q Consensus 407 aIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF 486 (596)
.+++.+...+..+|+|.+.+.|--+..| +++-+ |.-+|||+|.. ..-++.+.+++.+.... ..+|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l----~~~~~--~~~~v~~vD~s------~~ML~~a~~k~~~~~~~---~i~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTREL----ARRVG--PNGKVVGVDIS------PGMLEVARKKLKREGLQ---NIEF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHH----GGGSS-----EEEEEES-------HHHHHHHHHHHHHTT-----SEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHH----HHHCC--CccEEEEecCC------HHHHHHHHHHHHhhCCC---CeeE
Confidence 3455566667779999999999644444 43322 34599999973 34566666666654332 2333
Q ss_pred EeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHH-HHhhCCcEEE
Q 045079 487 NVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDL-IKRINPDVFI 547 (596)
Q Consensus 487 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~-Ir~L~P~Vfv 547 (596)
. .-+.++|...++.+=+|-|.|.||++.|. ..+|+. .|=|+|.-.+
T Consensus 103 v-------~~da~~lp~~d~sfD~v~~~fglrn~~d~--------~~~l~E~~RVLkPGG~l 149 (233)
T PF01209_consen 103 V-------QGDAEDLPFPDNSFDAVTCSFGLRNFPDR--------ERALREMYRVLKPGGRL 149 (233)
T ss_dssp E-------E-BTTB--S-TT-EEEEEEES-GGG-SSH--------HHHHHHHHHHEEEEEEE
T ss_pred E-------EcCHHHhcCCCCceeEEEHHhhHHhhCCH--------HHHHHHHHHHcCCCeEE
Confidence 2 22345566666788899999999999862 345554 5667997643
No 12
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=90.18 E-value=0.39 Score=49.63 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=30.9
Q ss_pred cCeeEEEEceeccccchHHHHHHHhcCCC--CCCeEEEEeecCC
Q 045079 415 ATRLHIIDFGICYGFQWPCLIQILSSRPT--GPPMLRITGIELP 456 (596)
Q Consensus 415 ~~~vHIIDfgI~~G~QWp~Liq~LA~R~g--GPP~LRITgI~~p 456 (596)
.+.++|.|.|.+.|--+-+|--.|++.-. ..+.++|+|+|..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis 141 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID 141 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC
Confidence 45699999999999877666555554321 2347999999984
No 13
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=88.95 E-value=3.3 Score=40.64 Aligned_cols=110 Identities=7% Similarity=0.081 Sum_probs=59.1
Q ss_pred hHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-
Q 045079 405 NQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP- 483 (596)
Q Consensus 405 NqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP- 483 (596)
.+.+++.+.....-+|+|+|.+.|. +...|+++ | .+|||||.. ...++.+.+ .++..+++
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S------~~~i~~a~~----~~~~~~~~~ 79 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKN------PMSIANLER----IKAAENLDN 79 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCC------HHHHHHHHH----HHHHcCCCc
Confidence 3445555554455689999999986 33446655 2 489999973 233443322 23334554
Q ss_pred EEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEE
Q 045079 484 FEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFI 547 (596)
Q Consensus 484 FeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv 547 (596)
.++ +...++++.. . ..=.+|+ |.+.+|++.++ .+..+++.| +-|+|.-.+
T Consensus 80 v~~--~~~d~~~~~~---~-~~fD~I~--~~~~~~~~~~~------~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 80 LHT--AVVDLNNLTF---D-GEYDFIL--STVVLMFLEAK------TIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred ceE--EecChhhCCc---C-CCcCEEE--EecchhhCCHH------HHHHHHHHHHHHcCCCcEE
Confidence 232 2223333321 1 1113343 33456776543 255677766 666999864
No 14
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=88.90 E-value=3 Score=40.82 Aligned_cols=111 Identities=10% Similarity=0.142 Sum_probs=62.4
Q ss_pred HHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCC
Q 045079 403 FANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNV 482 (596)
Q Consensus 403 ~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gV 482 (596)
.+...|++++.-...-+|+|+|.+.|.--. .|+.+ | .++||||.. ...++.+ .+.++..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s------~~~l~~a----~~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHN------PASIASV----LDMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECC------HHHHHHH----HHHHHHhCC
Confidence 455677777765556799999999996433 34444 3 479999973 1234333 334455577
Q ss_pred cEEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEE
Q 045079 483 PFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVF 546 (596)
Q Consensus 483 PFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vf 546 (596)
+..+... .+.... +. ..=++++ |.+.||++.++ .+..+++.+ |.|+|.-.
T Consensus 78 ~v~~~~~--d~~~~~---~~-~~fD~I~--~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAY--DINAAA---LN-EDYDFIF--STVVFMFLQAG------RVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEec--cchhcc---cc-CCCCEEE--EecccccCCHH------HHHHHHHHHHHHhCCCcE
Confidence 6444322 122111 11 1113343 33446776543 245677776 56799975
No 15
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=88.59 E-value=1.5 Score=36.12 Aligned_cols=93 Identities=20% Similarity=0.250 Sum_probs=54.5
Q ss_pred EEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCccc
Q 045079 421 IDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLED 500 (596)
Q Consensus 421 IDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~ed 500 (596)
+|+|.+.|+....|.+. +-.++||||.. .+.++.+ .+..+..+++ +...+.++
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~------~~~~~~~----~~~~~~~~~~---------~~~~d~~~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDIS------EEMLEQA----RKRLKNEGVS---------FRQGDAED 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-------HHHHHHH----HHHTTTSTEE---------EEESBTTS
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCC------HHHHHHH----HhcccccCch---------heeehHHh
Confidence 58899888777666554 34799999973 2333333 3333333444 12233455
Q ss_pred ccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEe
Q 045079 501 FKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIH 548 (596)
Q Consensus 501 L~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~ 548 (596)
+.+.++-+=+|-|...+||+. .+..+|+.| |-|+|.-+++
T Consensus 54 l~~~~~sfD~v~~~~~~~~~~--------~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 54 LPFPDNSFDVVFSNSVLHHLE--------DPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SSS-TT-EEEEEEESHGGGSS--------HHHHHHHHHHHHEEEEEEEE
T ss_pred Cccccccccccccccceeecc--------CHHHHHHHHHHHcCcCeEEe
Confidence 555667777888888899982 145566655 6668876653
No 16
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=88.16 E-value=1.4 Score=45.63 Aligned_cols=100 Identities=23% Similarity=0.386 Sum_probs=67.5
Q ss_pred cCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccc
Q 045079 415 ATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWE 494 (596)
Q Consensus 415 ~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E 494 (596)
-..+-|+|+|.+-| .|-+.||+. | ..+||||... ..|+.+ ...|.+-||-.+|.+.
T Consensus 58 l~g~~vLDvGCGgG----~Lse~mAr~-G----a~VtgiD~se------~~I~~A----k~ha~e~gv~i~y~~~----- 113 (243)
T COG2227 58 LPGLRVLDVGCGGG----ILSEPLARL-G----ASVTGIDASE------KPIEVA----KLHALESGVNIDYRQA----- 113 (243)
T ss_pred CCCCeEEEecCCcc----HhhHHHHHC-C----CeeEEecCCh------HHHHHH----HHhhhhccccccchhh-----
Confidence 46678999999988 788888854 4 8999999742 234332 2346666777666554
Q ss_pred ccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEe
Q 045079 495 TIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIH 548 (596)
Q Consensus 495 ~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~ 548 (596)
..++|.-.-+-.=||-|+=-|+|+.|. . .|++.. +.++|.-.++
T Consensus 114 --~~edl~~~~~~FDvV~cmEVlEHv~dp-------~-~~~~~c~~lvkP~G~lf 158 (243)
T COG2227 114 --TVEDLASAGGQFDVVTCMEVLEHVPDP-------E-SFLRACAKLVKPGGILF 158 (243)
T ss_pred --hHHHHHhcCCCccEEEEhhHHHccCCH-------H-HHHHHHHHHcCCCcEEE
Confidence 344443332456688999999999984 3 466665 5559986554
No 17
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=87.37 E-value=14 Score=41.07 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=62.7
Q ss_pred HHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045079 406 QTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 406 qaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFe 485 (596)
..+++.+.-.+.-+|+|+|.+.|. +...|+.+.+ .++||||.. .+.++.+.++. ...+...+
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS------~~~l~~A~~~~----~~~~~~v~ 317 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLS------VNMISFALERA----IGRKCSVE 317 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHHHHHh----hcCCCceE
Confidence 444454432345689999999984 3455666553 489999974 24454443332 22333445
Q ss_pred EEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEeee
Q 045079 486 YNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHGI 550 (596)
Q Consensus 486 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~e 550 (596)
|.. ..+.++. +..+.+=+|-|...++|+.| | ..+|+.+ |-|+|.-.++..
T Consensus 318 ~~~--~d~~~~~-----~~~~~fD~I~s~~~l~h~~d-------~-~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 318 FEV--ADCTKKT-----YPDNSFDVIYSRDTILHIQD-------K-PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEE--cCcccCC-----CCCCCEEEEEECCcccccCC-------H-HHHHHHHHHHcCCCeEEEEE
Confidence 533 2222221 22233445666677888865 3 3555554 677999876543
No 18
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=87.03 E-value=4.3 Score=42.22 Aligned_cols=97 Identities=13% Similarity=0.218 Sum_probs=54.1
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRL 498 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~ 498 (596)
+|+|+|.+.|. +...|+.+ | .++||||.. ...++ .+.+.|+..++.+++... .++...
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s------~~ai~----~~~~~~~~~~l~v~~~~~--D~~~~~- 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDIN------QQSLE----NLQEIAEKENLNIRTGLY--DINSAS- 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHH----HHHHHHHHcCCceEEEEe--chhccc-
Confidence 89999999986 33445554 2 589999973 23343 344556666776655322 222211
Q ss_pred ccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEe
Q 045079 499 EDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIH 548 (596)
Q Consensus 499 edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~ 548 (596)
+. ..=++|+. .+.||++.++ -+..+|+.+ +.++|+-.++
T Consensus 181 --~~-~~fD~I~~--~~vl~~l~~~------~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 181 --IQ-EEYDFILS--TVVLMFLNRE------RIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred --cc-CCccEEEE--cchhhhCCHH------HHHHHHHHHHHhcCCCcEEE
Confidence 10 11133433 3456776543 245677766 5669987633
No 19
>PRK05785 hypothetical protein; Provisional
Probab=87.01 E-value=28 Score=35.14 Aligned_cols=92 Identities=8% Similarity=0.029 Sum_probs=52.6
Q ss_pred eeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccccc
Q 045079 417 RLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETI 496 (596)
Q Consensus 417 ~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i 496 (596)
.-.|+|+|.+.|.-. ..|+.+.+ .+|||||.. .+-++....+ .++ +....++
T Consensus 52 ~~~VLDlGcGtG~~~----~~l~~~~~----~~v~gvD~S------~~Ml~~a~~~---------~~~----~~~d~~~- 103 (226)
T PRK05785 52 PKKVLDVAAGKGELS----YHFKKVFK----YYVVALDYA------ENMLKMNLVA---------DDK----VVGSFEA- 103 (226)
T ss_pred CCeEEEEcCCCCHHH----HHHHHhcC----CEEEEECCC------HHHHHHHHhc---------cce----EEechhh-
Confidence 458999999999433 34444432 489999973 2334332211 111 2222333
Q ss_pred CcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEe
Q 045079 497 RLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIH 548 (596)
Q Consensus 497 ~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~ 548 (596)
+...++.+=+|-|.|.|||+.| .+.+|+.+ |-++|.++++
T Consensus 104 ----lp~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~il 144 (226)
T PRK05785 104 ----LPFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQVGFI 144 (226)
T ss_pred ----CCCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCceEEE
Confidence 3333455556777788888765 24677766 5669965444
No 20
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=86.51 E-value=26 Score=36.31 Aligned_cols=135 Identities=13% Similarity=0.206 Sum_probs=82.2
Q ss_pred hcccchhhhH-HHHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHH
Q 045079 392 SAWPFIRMSY-LFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETG 470 (596)
Q Consensus 392 ~~~Pf~kfa~-~~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG 470 (596)
..+.+..|+. ..=++...+.+.-.+-.+|+|.+.+-| .|.- .|+++-| .-+|||||.. ..-|+.+.
T Consensus 26 ~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTG-d~a~---~~~k~~g---~g~v~~~D~s------~~ML~~a~ 92 (238)
T COG2226 26 LMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTG-DMAL---LLAKSVG---TGEVVGLDIS------ESMLEVAR 92 (238)
T ss_pred hhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCcc-HHHH---HHHHhcC---CceEEEEECC------HHHHHHHH
Confidence 3444555543 334445555554346899999999988 3333 3444433 7899999973 34555555
Q ss_pred HHHHHHHhhcCCc-EEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEe
Q 045079 471 NRLKSYCERFNVP-FEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIH 548 (596)
Q Consensus 471 ~rL~~~A~~~gVP-FeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~ 548 (596)
+|+.+ .|+- ++|. ... .+.|...++-.=+|.|.|.|||+.|- +.+|+-+ |=++|...++
T Consensus 93 ~k~~~----~~~~~i~fv--~~d-----Ae~LPf~D~sFD~vt~~fglrnv~d~--------~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 93 EKLKK----KGVQNVEFV--VGD-----AENLPFPDNSFDAVTISFGLRNVTDI--------DKALKEMYRVLKPGGRLL 153 (238)
T ss_pred HHhhc----cCccceEEE--Eec-----hhhCCCCCCccCEEEeeehhhcCCCH--------HHHHHHHHHhhcCCeEEE
Confidence 55443 2322 4442 233 34455555677799999999999973 6777766 5679999666
Q ss_pred eeecCCCCcc
Q 045079 549 GISNGTYNAP 558 (596)
Q Consensus 549 ~e~n~~~nsp 558 (596)
+..=.....+
T Consensus 154 vle~~~p~~~ 163 (238)
T COG2226 154 VLEFSKPDNP 163 (238)
T ss_pred EEEcCCCCch
Confidence 5544444443
No 21
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=86.25 E-value=33 Score=33.05 Aligned_cols=112 Identities=16% Similarity=0.231 Sum_probs=59.1
Q ss_pred HHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045079 406 QTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 406 qaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFe 485 (596)
+.+++.+.-.+..+|+|+|.+.|. +...++.+ +|+..++|+|+.. ...++.+.+++. .+-...
T Consensus 29 ~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~--~~~~~~~~~iD~~------~~~~~~~~~~~~-----~~~~i~ 91 (223)
T TIGR01934 29 RRAVKLIGVFKGQKVLDVACGTGD----LAIELAKS--APDRGKVTGVDFS------SEMLEVAKKKSE-----LPLNIE 91 (223)
T ss_pred HHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHh--cCCCceEEEEECC------HHHHHHHHHHhc-----cCCCce
Confidence 445555555567899999999885 23334433 2334789999963 233444443332 122233
Q ss_pred EEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHH-HHhhCCcEEEee
Q 045079 486 YNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDL-IKRINPDVFIHG 549 (596)
Q Consensus 486 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~-Ir~L~P~Vfv~~ 549 (596)
|.. ....++. ..++.+=+|-+.+.+|++.+ + +.+|+. .+.|+|.-.++.
T Consensus 92 ~~~--~d~~~~~-----~~~~~~D~i~~~~~~~~~~~-------~-~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 92 FIQ--ADAEALP-----FEDNSFDAVTIAFGLRNVTD-------I-QKALREMYRVLKPGGRLVI 141 (223)
T ss_pred EEe--cchhcCC-----CCCCcEEEEEEeeeeCCccc-------H-HHHHHHHHHHcCCCcEEEE
Confidence 332 2222221 12223444445566777653 3 345555 466799876543
No 22
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=85.32 E-value=14 Score=38.12 Aligned_cols=114 Identities=11% Similarity=0.165 Sum_probs=60.9
Q ss_pred HhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc
Q 045079 404 ANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP 483 (596)
Q Consensus 404 ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP 483 (596)
+.+.|++.+.-....+|+|+|.+.|.-. ..|+.+.+ .++|||+.. ...++.+.+++.. .-.
T Consensus 40 ~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~----~~v~giD~s------~~~~~~a~~~~~~-----~~~ 100 (263)
T PTZ00098 40 ATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG----AHVHGVDIC------EKMVNIAKLRNSD-----KNK 100 (263)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC----CEEEEEECC------HHHHHHHHHHcCc-----CCc
Confidence 4556666665566678999999999732 34444332 589999973 2344444443321 112
Q ss_pred EEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEee
Q 045079 484 FEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHG 549 (596)
Q Consensus 484 FeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~ 549 (596)
.+|.. .... ++...++.+=+|-+...++|+..+ -+..+|+.+ +-|+|.-.++.
T Consensus 101 i~~~~--~D~~-----~~~~~~~~FD~V~s~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 101 IEFEA--NDIL-----KKDFPENTFDMIYSRDAILHLSYA------DKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred eEEEE--CCcc-----cCCCCCCCeEEEEEhhhHHhCCHH------HHHHHHHHHHHHcCCCcEEEE
Confidence 33322 1111 112222223333344556676532 145677766 66799876554
No 23
>PLN02244 tocopherol O-methyltransferase
Probab=85.27 E-value=8.3 Score=41.27 Aligned_cols=100 Identities=14% Similarity=0.201 Sum_probs=57.2
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc--EEEEeecccc
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP--FEYNVIAQKW 493 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP--FeF~~Ia~~~ 493 (596)
+.-+|+|+|.+.|. +...|+.+.| .++|||+.. ...++.+ .+.++..|+. .+|.. ...
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s------~~~i~~a----~~~~~~~g~~~~v~~~~--~D~ 177 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLS------PVQAARA----NALAAAQGLSDKVSFQV--ADA 177 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECC------HHHHHHH----HHHHHhcCCCCceEEEE--cCc
Confidence 44579999999884 4556666543 489999973 2333332 2334444542 44432 222
Q ss_pred cccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHH-HHhhCCcEEEe
Q 045079 494 ETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDL-IKRINPDVFIH 548 (596)
Q Consensus 494 E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~-Ir~L~P~Vfv~ 548 (596)
+++ ....+.+=+|-|...++|+.|. ..+|+. .|-|+|.-.++
T Consensus 178 ~~~-----~~~~~~FD~V~s~~~~~h~~d~--------~~~l~e~~rvLkpGG~lv 220 (340)
T PLN02244 178 LNQ-----PFEDGQFDLVWSMESGEHMPDK--------RKFVQELARVAAPGGRII 220 (340)
T ss_pred ccC-----CCCCCCccEEEECCchhccCCH--------HHHHHHHHHHcCCCcEEE
Confidence 222 2223444456667788898762 356655 46779975443
No 24
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=84.46 E-value=9.9 Score=39.97 Aligned_cols=109 Identities=14% Similarity=0.148 Sum_probs=65.0
Q ss_pred eeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc-
Q 045079 417 RLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWET- 495 (596)
Q Consensus 417 ~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~- 495 (596)
..+|||+|.|.|.-=..|++++.. ..++||||.. .+.|+.+.++|.+- .-+++++ .|.....+
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS------~~mL~~a~~~l~~~--~p~~~v~--~i~gD~~~~ 127 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQ------PARYVPIDIS------ADALKESAAALAAD--YPQLEVH--GICADFTQP 127 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECC------HHHHHHHHHHHHhh--CCCceEE--EEEEcccch
Confidence 357999999999766677777742 3789999984 46678887777641 1234443 33332221
Q ss_pred cCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcE-EEe
Q 045079 496 IRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDV-FIH 548 (596)
Q Consensus 496 i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~V-fv~ 548 (596)
+.... .......+++.+-..++|+..+. ...+|+.| +.|+|.- |++
T Consensus 128 ~~~~~-~~~~~~~~~~~~gs~~~~~~~~e------~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 128 LALPP-EPAAGRRLGFFPGSTIGNFTPEE------AVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred hhhhc-ccccCCeEEEEecccccCCCHHH------HHHHHHHHHHhcCCCCEEEE
Confidence 11000 01112466666666778776432 34688887 4579964 444
No 25
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=84.20 E-value=9.3 Score=39.85 Aligned_cols=138 Identities=17% Similarity=0.251 Sum_probs=76.2
Q ss_pred hhHHHHhHHHHHhhhh----cCeeEEEEceecccc-chHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHH
Q 045079 399 MSYLFANQTIRKLAEK----ATRLHIIDFGICYGF-QWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRL 473 (596)
Q Consensus 399 fa~~~ANqaIleA~~g----~~~vHIIDfgI~~G~-QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL 473 (596)
-+++.+-..||+.++. -.--+|+|||-|-|. =|.. .+.+ +-..++|.||.. ....+.|++|
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s-------~~~~~l~~~l 77 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRS-------PEMLELAKRL 77 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCC-------HHHHHHHHHH
Confidence 4566677777777753 345699999999873 3322 1111 124689999853 3456777777
Q ss_pred HHHHhhcCCcEEEEeecccc-cccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEeeee
Q 045079 474 KSYCERFNVPFEYNVIAQKW-ETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHGIS 551 (596)
Q Consensus 474 ~~~A~~~gVPFeF~~Ia~~~-E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~e~ 551 (596)
.+-... ..- ..| ..+..+.+.+.+.+.|+ +.|.|..|.++ .|..+++.+ .+.++ ++|++|.
T Consensus 78 ~~~~~~--~~~------~~~~~~~~~~~~~~~~~DLvi--~s~~L~EL~~~------~r~~lv~~LW~~~~~-~LVlVEp 140 (274)
T PF09243_consen 78 LRAGPN--NRN------AEWRRVLYRDFLPFPPDDLVI--ASYVLNELPSA------ARAELVRSLWNKTAP-VLVLVEP 140 (274)
T ss_pred Hhcccc--ccc------chhhhhhhcccccCCCCcEEE--EehhhhcCCch------HHHHHHHHHHHhccC-cEEEEcC
Confidence 654321 110 011 11122223333333333 33455555542 477777777 55666 5555444
Q ss_pred cCCCCcchhHHHHHHHH
Q 045079 552 NGTYNAPFFLARFREAL 568 (596)
Q Consensus 552 n~~~nsp~F~~RF~EAL 568 (596)
|+...-..+.+.|+.|
T Consensus 141 -Gt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 141 -GTPAGFRRIAEARDQL 156 (274)
T ss_pred -CChHHHHHHHHHHHHH
Confidence 6655556777788777
No 26
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=83.65 E-value=9.7 Score=40.77 Aligned_cols=104 Identities=17% Similarity=0.263 Sum_probs=59.5
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHh-hc-CCcEEEEeecccc
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCE-RF-NVPFEYNVIAQKW 493 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~-~~-gVPFeF~~Ia~~~ 493 (596)
+...|+|+|.+.|. +...|+.+ | .+|||||.. ...++.+.++....-. .. +...+|.. ..+
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S------~~ml~~A~~~~~~~~~~~~~~~~~~f~~--~Dl 206 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDIS------AAMVAEAERRAKEALAALPPEVLPKFEA--NDL 206 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECC------HHHHHHHHHHHHhcccccccccceEEEE--cch
Confidence 45689999999885 44555544 3 489999974 3456655555432110 01 22344433 223
Q ss_pred cccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeee
Q 045079 494 ETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGI 550 (596)
Q Consensus 494 E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e 550 (596)
+++ . +..=+|-|...|+|++++ ....+++.++++.|..+++..
T Consensus 207 ~~l-----~---~~fD~Vv~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs~ 249 (315)
T PLN02585 207 ESL-----S---GKYDTVTCLDVLIHYPQD------KADGMIAHLASLAEKRLIISF 249 (315)
T ss_pred hhc-----C---CCcCEEEEcCEEEecCHH------HHHHHHHHHHhhcCCEEEEEe
Confidence 322 1 111134466667787764 235688888888888777643
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=83.27 E-value=11 Score=41.79 Aligned_cols=115 Identities=10% Similarity=0.153 Sum_probs=61.2
Q ss_pred HHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045079 406 QTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 406 qaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFe 485 (596)
..|++.+.....-+|+|+|.+.|.--.. |+.+. -++||||... ..++.. +.+. ...-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~----la~~~-----~~v~giD~s~------~~l~~a-~~~~----~~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFTGE----LAKKA-----GQVIALDFIE------SVIKKN-ESIN----GHYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHHHH----HHhhC-----CEEEEEeCCH------HHHHHH-HHHh----ccCCceE
Confidence 3455565544445899999999954433 44442 1789999632 334332 1111 1111223
Q ss_pred EEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHh-hCCcEEEeeee
Q 045079 486 YNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKR-INPDVFIHGIS 551 (596)
Q Consensus 486 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~-L~P~Vfv~~e~ 551 (596)
|.. ...++ .++....+.+=+|-|.+.|||+.++. +..+|+.+++ |+|.-+++...
T Consensus 87 ~~~--~d~~~---~~~~~~~~~fD~I~~~~~l~~l~~~~------~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 87 FMC--ADVTS---PDLNISDGSVDLIFSNWLLMYLSDKE------VENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred EEE--ecccc---cccCCCCCCEEEEehhhhHHhCCHHH------HHHHHHHHHHhcCCCeEEEEEe
Confidence 322 11211 11222233444555667889998642 3567776654 79998776543
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=83.07 E-value=18 Score=36.67 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=60.8
Q ss_pred HHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEE
Q 045079 407 TIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEY 486 (596)
Q Consensus 407 aIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF 486 (596)
.|++.+. .+..+|+|+|.+.|. +...|+.+ | .++||||.. .+.++.+.+++ +..|+.-..
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s------~~~l~~a~~~~----~~~g~~~~v 95 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLS------AEMIQRAKQAA----EAKGVSDNM 95 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECC------HHHHHHHHHHH----HhcCCccce
Confidence 4555554 345699999999993 44556655 2 489999963 34455544443 344543222
Q ss_pred EeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEee
Q 045079 487 NVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHG 549 (596)
Q Consensus 487 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~ 549 (596)
..+...++++.. ..++.+=+|-|...|||+.+ |...+-...+-|+|.-.+..
T Consensus 96 ~~~~~d~~~l~~----~~~~~fD~V~~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 96 QFIHCAAQDIAQ----HLETPVDLILFHAVLEWVAD-------PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEEEcCHHHHhh----hcCCCCCEEEehhHHHhhCC-------HHHHHHHHHHHcCCCeEEEE
Confidence 223333333321 11122323345566777754 44444444567799987653
No 29
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=82.78 E-value=14 Score=37.35 Aligned_cols=114 Identities=17% Similarity=0.235 Sum_probs=60.7
Q ss_pred hHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcE
Q 045079 405 NQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPF 484 (596)
Q Consensus 405 NqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPF 484 (596)
+..|++.+.-.+.-+|+|+|.+.| .+...|+.+. |..+++|||.. ...++.+.+++. + .
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G----~~~~~la~~~---~~~~v~gvD~s------~~~i~~a~~~~~------~--~ 78 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPG----NSTELLVERW---PAARITGIDSS------PAMLAEARSRLP------D--C 78 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCC----HHHHHHHHHC---CCCEEEEEECC------HHHHHHHHHhCC------C--C
Confidence 445666665455678999999998 2334555543 34689999973 233433332210 1 2
Q ss_pred EEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeeeecCC
Q 045079 485 EYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGT 554 (596)
Q Consensus 485 eF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e~n~~ 554 (596)
+|.. ...+++... +.+=+|-|.+.||++.|. ...+-+..+.|+|.-.++.....+
T Consensus 79 ~~~~--~d~~~~~~~------~~fD~v~~~~~l~~~~d~-------~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 79 QFVE--ADIASWQPP------QALDLIFANASLQWLPDH-------LELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred eEEE--CchhccCCC------CCccEEEEccChhhCCCH-------HHHHHHHHHhcCCCcEEEEECCCC
Confidence 3322 122222111 122234455677887652 333444447779998766654333
No 30
>PRK08317 hypothetical protein; Provisional
Probab=82.75 E-value=41 Score=32.49 Aligned_cols=113 Identities=16% Similarity=0.188 Sum_probs=57.6
Q ss_pred HHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEE
Q 045079 408 IRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYN 487 (596)
Q Consensus 408 IleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~ 487 (596)
+++.+.-...-+|+|+|.+.|. |.. .++.+. +|.-++|||+.. ...++.+.++. ...+...+|.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~~---~~a~~~--~~~~~v~~~d~~------~~~~~~a~~~~----~~~~~~~~~~ 74 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DAR---ELARRV--GPEGRVVGIDRS------EAMLALAKERA----AGLGPNVEFV 74 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HHH---HHHHhc--CCCcEEEEEeCC------HHHHHHHHHHh----hCCCCceEEE
Confidence 4555555566789999999884 333 333332 245689999973 23344443331 1112223333
Q ss_pred eecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeee
Q 045079 488 VIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGI 550 (596)
Q Consensus 488 ~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e 550 (596)
. ...+.+. ...+.+=+|-+...++|+.| |...+-+..+.|+|.-.++.+
T Consensus 75 ~--~d~~~~~-----~~~~~~D~v~~~~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 75 R--GDADGLP-----FPDGSFDAVRSDRVLQHLED-------PARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred e--cccccCC-----CCCCCceEEEEechhhccCC-------HHHHHHHHHHHhcCCcEEEEE
Confidence 2 1222221 12222334445556777764 333333444667999865543
No 31
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=80.75 E-value=8.7 Score=34.91 Aligned_cols=97 Identities=22% Similarity=0.445 Sum_probs=56.2
Q ss_pred hcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccc
Q 045079 414 KATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKW 493 (596)
Q Consensus 414 g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~ 493 (596)
..+.-.|+|+|.+.| .| .+.|+.+ |. ++||+|.. ...++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~~---~~~l~~~--~~---~~~g~D~~------~~~~~~-----------~~~~~~~~~~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-SF---LRALAKR--GF---EVTGVDIS------PQMIEK-----------RNVVFDNFDAQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-HH---HHHHHHT--TS---EEEEEESS------HHHHHH-----------TTSEEEEEECH---
T ss_pred cCCCCEEEEEcCCCC-HH---HHHHHHh--CC---EEEEEECC------HHHHhh-----------hhhhhhhhhhh---
Confidence 466779999999999 44 4444544 32 99999973 122322 22222211111
Q ss_pred cccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEE-eeeecC
Q 045079 494 ETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFI-HGISNG 553 (596)
Q Consensus 494 E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv-~~e~n~ 553 (596)
+.....+-+=+|-|...|+|+.| | ..+|+.| +.|+|.-++ +...+.
T Consensus 71 ------~~~~~~~~fD~i~~~~~l~~~~d-------~-~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 71 ------DPPFPDGSFDLIICNDVLEHLPD-------P-EEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ------THHCHSSSEEEEEEESSGGGSSH-------H-HHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ------hhhccccchhhHhhHHHHhhccc-------H-HHHHHHHHHhcCCCCEEEEEEcCC
Confidence 11223345667777789999985 3 4566666 556996654 444444
No 32
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=79.93 E-value=54 Score=32.95 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=28.8
Q ss_pred hHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 405 NQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 405 NqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
...+++.+.....-+|+|+|.+.|. +.+.|+.+ + -++||||..
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s 73 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLS 73 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECC
Confidence 3445555554445679999999994 45566653 2 489999973
No 33
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=78.93 E-value=7.7 Score=41.63 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=57.0
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCC--cEEEEeecccc
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNV--PFEYNVIAQKW 493 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gV--PFeF~~Ia~~~ 493 (596)
+...|+|+|.+.|. +...|+. .| .++||||.. .+.++.+.++ ++..++ ..+|.. ...
T Consensus 131 ~g~~ILDIGCG~G~----~s~~La~-~g----~~V~GID~s------~~~i~~Ar~~----~~~~~~~~~i~~~~--~da 189 (322)
T PLN02396 131 EGLKFIDIGCGGGL----LSEPLAR-MG----ATVTGVDAV------DKNVKIARLH----ADMDPVTSTIEYLC--TTA 189 (322)
T ss_pred CCCEEEEeeCCCCH----HHHHHHH-cC----CEEEEEeCC------HHHHHHHHHH----HHhcCcccceeEEe--cCH
Confidence 34579999999997 4556664 33 489999973 2334433322 221111 233332 223
Q ss_pred cccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHh-hCCcEEEee
Q 045079 494 ETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKR-INPDVFIHG 549 (596)
Q Consensus 494 E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~-L~P~Vfv~~ 549 (596)
+++. ...+.+=+|-|...|+|+.|. +.+|+.|++ |+|.-.++.
T Consensus 190 e~l~-----~~~~~FD~Vi~~~vLeHv~d~--------~~~L~~l~r~LkPGG~lii 233 (322)
T PLN02396 190 EKLA-----DEGRKFDAVLSLEVIEHVANP--------AEFCKSLSALTIPNGATVL 233 (322)
T ss_pred HHhh-----hccCCCCEEEEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEEE
Confidence 3332 222334466677788998863 467777754 589876553
No 34
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=77.77 E-value=21 Score=34.74 Aligned_cols=110 Identities=15% Similarity=0.260 Sum_probs=57.3
Q ss_pred HHHHHhhhh---cCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCC
Q 045079 406 QTIRKLAEK---ATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNV 482 (596)
Q Consensus 406 qaIleA~~g---~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gV 482 (596)
..+++.+.. .+..+|+|+|.+.|.-. ..|+.+ + |..++||||.. ...++.+..++. . ++
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~----~~l~~~--~-~~~~~~~~D~~------~~~~~~~~~~~~----~-~~ 82 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLT----RALLKR--F-PQAEFIALDIS------AGMLAQAKTKLS----E-NV 82 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHH----HHHHHh--C-CCCcEEEEeCh------HHHHHHHHHhcC----C-CC
Confidence 334444443 33478999999999532 333333 2 45789999973 233444333332 0 22
Q ss_pred cEEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEeee
Q 045079 483 PFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHGI 550 (596)
Q Consensus 483 PFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~e 550 (596)
+| +...++++. ..++.+=+|-|.+.|||+.| + ..+|..+ +.|+|+-+++..
T Consensus 83 --~~--~~~d~~~~~-----~~~~~fD~vi~~~~l~~~~~-------~-~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 83 --QF--ICGDAEKLP-----LEDSSFDLIVSNLALQWCDD-------L-SQALSELARVLKPGGLLAFS 134 (240)
T ss_pred --eE--EecchhhCC-----CCCCceeEEEEhhhhhhccC-------H-HHHHHHHHHHcCCCcEEEEE
Confidence 22 223333322 12222333445566777754 2 4566666 456998766544
No 35
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=77.53 E-value=23 Score=34.87 Aligned_cols=114 Identities=14% Similarity=0.211 Sum_probs=60.3
Q ss_pred HHHHhHHHHHhhh--hcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHh
Q 045079 401 YLFANQTIRKLAE--KATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCE 478 (596)
Q Consensus 401 ~~~ANqaIleA~~--g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~ 478 (596)
+-.....+++.+. ..+.-+|+|+|.+.|. +...|+.+. .+|||||.. .+.++.+.+++..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s------~~~i~~a~~~~~~--- 99 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDIS------EQMVQMARNRAQG--- 99 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECC------HHHHHHHHHHHHh---
Confidence 3344456666665 2456799999999985 555566542 389999973 2345444444432
Q ss_pred hcCC--cEEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHh-hCCcEEEee
Q 045079 479 RFNV--PFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKR-INPDVFIHG 549 (596)
Q Consensus 479 ~~gV--PFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~-L~P~Vfv~~ 549 (596)
.++ ..+|.. ..++++. ..=+++ -+...++|+..+ ....+++.|.+ ++|.+++..
T Consensus 100 -~~~~~~i~~~~--~d~~~~~------~~fD~i--i~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 100 -RDVAGNVEFEV--NDLLSLC------GEFDIV--VCMDVLIHYPAS------DMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -cCCCCceEEEE--CChhhCC------CCcCEE--EEhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEEE
Confidence 233 344432 2233322 112333 333445665432 13456776654 466655543
No 36
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=76.54 E-value=5.2 Score=34.46 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=56.4
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRL 498 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~ 498 (596)
+|+|+|.+.|. +...|+++. |..||||||.. .+.++.+.+++.+.... -..+|.. ..+ ....
T Consensus 4 ~vLDlGcG~G~----~~~~l~~~~---~~~~v~gvD~s------~~~~~~a~~~~~~~~~~--~~i~~~~--~d~-~~~~ 65 (112)
T PF12847_consen 4 RVLDLGCGTGR----LSIALARLF---PGARVVGVDIS------PEMLEIARERAAEEGLS--DRITFVQ--GDA-EFDP 65 (112)
T ss_dssp EEEEETTTTSH----HHHHHHHHH---TTSEEEEEESS------HHHHHHHHHHHHHTTTT--TTEEEEE--SCC-HGGT
T ss_pred EEEEEcCcCCH----HHHHHHhcC---CCCEEEEEeCC------HHHHHHHHHHHHhcCCC--CCeEEEE--Ccc-ccCc
Confidence 68999999983 333344321 33789999973 35577666666443333 3343332 222 1111
Q ss_pred ccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEeee
Q 045079 499 EDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHGI 550 (596)
Q Consensus 499 edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~e 550 (596)
+. ..+=++++.+. +.++++.+. .-+..+|+.+ +.|+|.-.++..
T Consensus 66 ~~--~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 66 DF--LEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp TT--SSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cc--CCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 11 01123455555 456655532 1245677766 466998876653
No 37
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=76.44 E-value=18 Score=36.19 Aligned_cols=107 Identities=16% Similarity=0.227 Sum_probs=55.7
Q ss_pred HHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045079 406 QTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 406 qaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFe 485 (596)
..++++..=...-+|||+|=+.| .+..+|+++. |.||+|..|+|. .++.+ +. +. ..+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G----~~~~~l~~~~---P~l~~~v~Dlp~-------v~~~~-~~----~~----rv~ 146 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSG----HFAIALARAY---PNLRATVFDLPE-------VIEQA-KE----AD----RVE 146 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTS----HHHHHHHHHS---TTSEEEEEE-HH-------HHCCH-HH----TT----TEE
T ss_pred hhhhccccccCccEEEeccCcch----HHHHHHHHHC---CCCcceeeccHh-------hhhcc-cc----cc----ccc
Confidence 34445544344458999999999 3334444444 679999999863 23222 22 11 123
Q ss_pred EEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCc---EEEeeee
Q 045079 486 YNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPD---VFIHGIS 551 (596)
Q Consensus 486 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~---Vfv~~e~ 551 (596)
|.+ .++ - +.+.. +=+|-.-.-||+..|+.+ ..+|++| +.|+|. .+++.|.
T Consensus 147 ~~~--gd~---f-~~~P~----~D~~~l~~vLh~~~d~~~------~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 147 FVP--GDF---F-DPLPV----ADVYLLRHVLHDWSDEDC------VKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp EEE--S-T---T-TCCSS----ESEEEEESSGGGS-HHHH------HHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ccc--ccH---H-hhhcc----ccceeeehhhhhcchHHH------HHHHHHHHHHhCCCCCCeEEEEee
Confidence 322 111 1 22222 334444566788887643 3677776 567876 4444443
No 38
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=76.44 E-value=22 Score=35.43 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=54.1
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRL 498 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~ 498 (596)
.|+|+|.+.|.....|.+.+ |..++|||+.. .+.++.+.+++. ++.+ .. ....+
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS------~~~l~~A~~~~~------~~~~--~~--~d~~~--- 99 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEIN------EYAVEKAKAYLP------NINI--IQ--GSLFD--- 99 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECC------HHHHHHHHhhCC------CCcE--EE--eeccC---
Confidence 59999999996555543322 23689999973 344554433221 2322 11 11111
Q ss_pred ccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeeeecC
Q 045079 499 EDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNG 553 (596)
Q Consensus 499 edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e~n~ 553 (596)
....+.+=+|-|...|+|+..+ -+..+++.+.+..=+.+++++...
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl~p~------~~~~~l~el~r~~~~~v~i~e~~~ 145 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHINPD------NLPTAYRELYRCSNRYILIAEYYN 145 (204)
T ss_pred ---CCCCCCEEEEEECChhhhCCHH------HHHHHHHHHHhhcCcEEEEEEeeC
Confidence 1122333344466667787532 245677777776666777777543
No 39
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=74.06 E-value=90 Score=30.37 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEe
Q 045079 409 RKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNV 488 (596)
Q Consensus 409 leA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~ 488 (596)
++.+.-....+|+|+|.+.|. +...++.+ +|+..++|+++.. ...++.+.+++... ....+..|..
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~----~~~~l~~~--~~~~~~v~~~D~s------~~~~~~a~~~~~~~--~~~~~~~~~~ 109 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGD----LAIALAKA--VGKTGEVVGLDFS------EGMLAVGREKLRDL--GLSGNVEFVQ 109 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCH----HHHHHHHH--cCCCCeEEEEeCC------HHHHHHHHHhhccc--ccccCeEEEe
Confidence 343333345789999999985 22233332 2357899999973 23344443333221 0222344432
Q ss_pred ecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEee
Q 045079 489 IAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHG 549 (596)
Q Consensus 489 Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~ 549 (596)
..++++.. ....-.+| -+.+.+|++.+ .+.+|..+ +.|+|.-.++.
T Consensus 110 --~d~~~~~~---~~~~~D~I--~~~~~l~~~~~--------~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 110 --GDAEALPF---PDNSFDAV--TIAFGLRNVPD--------IDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred --cccccCCC---CCCCccEE--EEecccccCCC--------HHHHHHHHHHhccCCcEEEE
Confidence 22222211 11111233 34556676653 24566665 55688875543
No 40
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=73.93 E-value=18 Score=39.10 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=73.5
Q ss_pred hhhHHHHhHHHHHhhhh----cCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHH
Q 045079 398 RMSYLFANQTIRKLAEK----ATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRL 473 (596)
Q Consensus 398 kfa~~~ANqaIleA~~g----~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL 473 (596)
.|-+..-..-|-+.+.. ....+|+|+|+|.|- .|..+...+. =++.|||+. .+.|+++.+|.
T Consensus 40 ~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGG---DL~Kw~~~~i-----~~~vg~Dis------~~si~ea~~Ry 105 (331)
T PF03291_consen 40 NFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGG---DLQKWQKAKI-----KHYVGIDIS------EESIEEARERY 105 (331)
T ss_dssp HHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTT---THHHHHHTT------SEEEEEES-------HHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCch---hHHHHHhcCC-----CEEEEEeCC------HHHHHHHHHHH
Confidence 44444455556665542 277999999999983 4444443322 367888873 57899999998
Q ss_pred HHHHhhc-------CCcEEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcE
Q 045079 474 KSYCERF-------NVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDV 545 (596)
Q Consensus 474 ~~~A~~~-------gVPFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~V 545 (596)
.+.-+.. ..+-+|..-..-++.|. +.+.-.....=||+|+|.||+...-- ... ..+|++| +.|+|.-
T Consensus 106 ~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~-~~~~~~~~~FDvVScQFalHY~Fese---~~a-r~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 106 KQLKKRNNSKQYRFDFIAEFIAADCFSESLR-EKLPPRSRKFDVVSCQFALHYAFESE---EKA-RQFLKNVSSLLKPGG 180 (331)
T ss_dssp HHHHTSTT-HTSEECCEEEEEESTTCCSHHH-CTSSSTTS-EEEEEEES-GGGGGSSH---HHH-HHHHHHHHHTEEEEE
T ss_pred HHhccccccccccccchhheeccccccchhh-hhccccCCCcceeehHHHHHHhcCCH---HHH-HHHHHHHHHhcCCCC
Confidence 6655332 12223322111121111 11111124677999999999987421 122 3466666 6679987
Q ss_pred EEe-eeecC
Q 045079 546 FIH-GISNG 553 (596)
Q Consensus 546 fv~-~e~n~ 553 (596)
+.+ +.+++
T Consensus 181 ~FIgT~~d~ 189 (331)
T PF03291_consen 181 YFIGTTPDS 189 (331)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEecCH
Confidence 554 44433
No 41
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=73.71 E-value=16 Score=38.18 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=61.3
Q ss_pred HHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045079 406 QTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 406 qaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFe 485 (596)
..|++.+.=+.-=||+|+|.+ |-.+...+|++.| +++|||.+. .+..+. ..+.++..|++=.
T Consensus 52 ~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS------~~Q~~~----a~~~~~~~gl~~~ 113 (273)
T PF02353_consen 52 DLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLS------EEQAEY----ARERIREAGLEDR 113 (273)
T ss_dssp HHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-------HHHHHH----HHHHHHCSTSSST
T ss_pred HHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECC------HHHHHH----HHHHHHhcCCCCc
Confidence 345565554556699999886 6688889998864 799999873 333433 4445566787633
Q ss_pred EEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEe
Q 045079 486 YNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIH 548 (596)
Q Consensus 486 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~ 548 (596)
...+...+.++.. .=|- |-++-.+.|+..+ -...+++.| +-|+|.-.++
T Consensus 114 v~v~~~D~~~~~~-----~fD~---IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~~~ 163 (273)
T PF02353_consen 114 VEVRLQDYRDLPG-----KFDR---IVSIEMFEHVGRK------NYPAFFRKISRLLKPGGRLV 163 (273)
T ss_dssp EEEEES-GGG--------S-SE---EEEESEGGGTCGG------GHHHHHHHHHHHSETTEEEE
T ss_pred eEEEEeeccccCC-----CCCE---EEEEechhhcChh------HHHHHHHHHHHhcCCCcEEE
Confidence 3333334444332 1132 3333446677543 256889888 4559987543
No 42
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=72.69 E-value=37 Score=32.93 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=24.6
Q ss_pred HHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecC
Q 045079 408 IRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIEL 455 (596)
Q Consensus 408 IleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~ 455 (596)
|.+.+.. .-+|+|+|.+.|. ++..|+.+.+ .+++||+.
T Consensus 7 i~~~i~~--~~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~ 44 (194)
T TIGR02081 7 ILNLIPP--GSRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEI 44 (194)
T ss_pred HHHhcCC--CCEEEEeCCCCCH----HHHHHHhccC----CcEEEEeC
Confidence 4444432 2379999999994 4566665432 35699986
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=71.22 E-value=1.3e+02 Score=32.21 Aligned_cols=140 Identities=10% Similarity=0.084 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHhhcccchhhhHHHH-------------hHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCC
Q 045079 379 SAADILKAYQMSLSAWPFIRMSYLFA-------------NQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGP 445 (596)
Q Consensus 379 s~~d~lkAy~lf~~~~Pf~kfa~~~A-------------NqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGP 445 (596)
+..+.-..|..+....||.|-.+-.- -+.|+..+..-+.-+|+|+|.+.|.. ...++.+ |+
T Consensus 72 ~~~~~~~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~ 145 (322)
T PRK15068 72 SEGQRKRIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GA 145 (322)
T ss_pred CHHHHHHHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CC
Confidence 44444455666666677755543331 22334444322334899999999842 2344443 33
Q ss_pred CeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCc
Q 045079 446 PMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTV 525 (596)
Q Consensus 446 P~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv 525 (596)
- +++|||+. ...+... +...+++.. ....+|.. ..++++.. ++-+=+|-|+..|||+.|
T Consensus 146 ~--~V~GiD~S------~~~l~q~-~a~~~~~~~-~~~i~~~~--~d~e~lp~------~~~FD~V~s~~vl~H~~d--- 204 (322)
T PRK15068 146 K--LVVGIDPS------QLFLCQF-EAVRKLLGN-DQRAHLLP--LGIEQLPA------LKAFDTVFSMGVLYHRRS--- 204 (322)
T ss_pred C--EEEEEcCC------HHHHHHH-HHHHHhcCC-CCCeEEEe--CCHHHCCC------cCCcCEEEECChhhccCC---
Confidence 2 59999952 1222111 112222211 22344432 23444432 121223345555777653
Q ss_pred CCCCcHHHHHHHHHhhCCcEEEee
Q 045079 526 VDSSPRDAVLDLIKRINPDVFIHG 549 (596)
Q Consensus 526 ~~~spRd~vL~~Ir~L~P~Vfv~~ 549 (596)
|.+.+-+.-+.|+|.-.++.
T Consensus 205 ----p~~~L~~l~~~LkpGG~lvl 224 (322)
T PRK15068 205 ----PLDHLKQLKDQLVPGGELVL 224 (322)
T ss_pred ----HHHHHHHHHHhcCCCcEEEE
Confidence 55555555577799865443
No 44
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=71.14 E-value=36 Score=33.21 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=51.5
Q ss_pred eeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccc
Q 045079 417 RLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQKWET 495 (596)
Q Consensus 417 ~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~~E~ 495 (596)
.-+|+|+|.+.|. +...+ +.+. |..++||||.. ...++. +.+.+++.|++ ++| +...+++
T Consensus 43 ~~~vLDiGcGtG~-~s~~l---a~~~---~~~~V~~iD~s------~~~~~~----a~~~~~~~~~~~i~~--i~~d~~~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGF-PGIPL---AIAR---PELKLTLLESN------HKKVAF----LREVKAELGLNNVEI--VNGRAED 103 (181)
T ss_pred CCeEEEecCCCCc-cHHHH---HHHC---CCCeEEEEeCc------HHHHHH----HHHHHHHhCCCCeEE--Eecchhh
Confidence 4589999999983 22222 2111 34689999963 223333 33444556664 444 3344554
Q ss_pred cCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHH-hhCCcEEEeee
Q 045079 496 IRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIK-RINPDVFIHGI 550 (596)
Q Consensus 496 i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir-~L~P~Vfv~~e 550 (596)
+.. -.+=++|+.|+ ++++ +.++..++ -|+|.-.++..
T Consensus 104 ~~~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 104 FQH----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccc----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 421 11224666554 3322 34556554 47999877755
No 45
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=67.27 E-value=83 Score=31.58 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=66.6
Q ss_pred HHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045079 406 QTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 406 qaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFe 485 (596)
..|++|+.--+.-.++|+|.+.|.- --.||++- ..+|++|... ..+ .+|.+.|+.-+++.+
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~G-----~~VtAvD~s~------~al----~~l~~~a~~~~l~i~ 80 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQG-----FDVTAVDISP------VAL----EKLQRLAEEEGLDIR 80 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHTT------EEEEEESSH------HHH----HHHHHHHHHTT-TEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHCC-----CeEEEEECCH------HHH----HHHHHHHhhcCceeE
Confidence 4467777666677899999999841 12366553 8899999742 233 357888999999966
Q ss_pred EEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHh-hCCcEEEee
Q 045079 486 YNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKR-INPDVFIHG 549 (596)
Q Consensus 486 F~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~-L~P~Vfv~~ 549 (596)
.... .+++ ..+. ++.=+|.+...|++|..+. ++.+++.|++ ++|..+.+.
T Consensus 81 ~~~~--Dl~~-----~~~~-~~yD~I~st~v~~fL~~~~------~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 81 TRVA--DLND-----FDFP-EEYDFIVSTVVFMFLQREL------RPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp EEE---BGCC-----BS-T-TTEEEEEEESSGGGS-GGG------HHHHHHHHHHTEEEEEEEEE
T ss_pred EEEe--cchh-----cccc-CCcCEEEEEEEeccCCHHH------HHHHHHHHHhhcCCcEEEEE
Confidence 5432 2322 2232 3444566767778887552 5778888754 689765443
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=67.18 E-value=55 Score=34.88 Aligned_cols=107 Identities=14% Similarity=0.225 Sum_probs=65.3
Q ss_pred HHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEE
Q 045079 408 IRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYN 487 (596)
Q Consensus 408 IleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~ 487 (596)
|++-+.=+.--||.|+|.+ |-.|+...|++-| +++|||.+. .+..+... +-++..|++=..+
T Consensus 64 ~~~kl~L~~G~~lLDiGCG----WG~l~~~aA~~y~----v~V~GvTlS------~~Q~~~~~----~r~~~~gl~~~v~ 125 (283)
T COG2230 64 ILEKLGLKPGMTLLDIGCG----WGGLAIYAAEEYG----VTVVGVTLS------EEQLAYAE----KRIAARGLEDNVE 125 (283)
T ss_pred HHHhcCCCCCCEEEEeCCC----hhHHHHHHHHHcC----CEEEEeeCC------HHHHHHHH----HHHHHcCCCcccE
Confidence 3444444567799999875 6689999998874 899999984 33444333 3345556663344
Q ss_pred eecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhh-CCcEE
Q 045079 488 VIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRI-NPDVF 546 (596)
Q Consensus 488 ~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L-~P~Vf 546 (596)
.+.+.|.++... + |-+| ++=.++|+..+. -+.+++.++++ +|+-.
T Consensus 126 v~l~d~rd~~e~-f----DrIv---SvgmfEhvg~~~------~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 126 VRLQDYRDFEEP-F----DRIV---SVGMFEHVGKEN------YDDFFKKVYALLKPGGR 171 (283)
T ss_pred EEeccccccccc-c----ceee---ehhhHHHhCccc------HHHHHHHHHhhcCCCce
Confidence 445566655533 1 3233 333456666543 36788888655 77643
No 47
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=66.21 E-value=60 Score=35.84 Aligned_cols=110 Identities=11% Similarity=0.087 Sum_probs=59.2
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRL 498 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~ 498 (596)
+|+|+|.+.|. +--.|+++. |..+||+||.. ...++-+.+++......-...++|.. ..-++.+..
T Consensus 231 ~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S------~~Av~~A~~N~~~n~~~~~~~v~~~~-~D~l~~~~~ 296 (378)
T PRK15001 231 EIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDES------PMAVASSRLNVETNMPEALDRCEFMI-NNALSGVEP 296 (378)
T ss_pred eEEEEeccccH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHHcCcccCceEEEEE-ccccccCCC
Confidence 79999999996 334455543 56899999973 34566655555433211001234432 111222211
Q ss_pred ccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHH-HHHhhCCcEEEeeeec
Q 045079 499 EDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLD-LIKRINPDVFIHGISN 552 (596)
Q Consensus 499 edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~-~Ir~L~P~Vfv~~e~n 552 (596)
..=++|+.|-.|+-.+-..+. -...++. .-+.|+|.-.+..+.|
T Consensus 297 -----~~fDlIlsNPPfh~~~~~~~~-----ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 297 -----FRFNAVLCNPPFHQQHALTDN-----VAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred -----CCEEEEEECcCcccCccCCHH-----HHHHHHHHHHHhcccCCEEEEEEe
Confidence 122577778777654422211 1234444 4467899987776654
No 48
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=64.78 E-value=98 Score=30.48 Aligned_cols=129 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCC-cEEEEeecccc-
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNV-PFEYNVIAQKW- 493 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gV-PFeF~~Ia~~~- 493 (596)
+.-.|+|+|.+.|.-...|.+ +. |..+|||||.. ...++.+-+++. ..++ .++|. ...+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~s------~~~i~~a~~~~~----~~~~~~v~~~--~~d~~ 100 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEVH------EPGVGKALKKIE----EEGLTNLRLL--CGDAV 100 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEec------hHHHHHHHHHHH----HcCCCCEEEE--ecCHH
Confidence 456799999999966555433 22 44689999973 234544433333 3343 24443 3334
Q ss_pred cccCcccccccCC--CeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEeeeecCCCCcchhHHHHHHHHHH
Q 045079 494 ETIRLEDFKIDRD--EVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHGISNGTYNAPFFLARFREALFH 570 (596)
Q Consensus 494 E~i~~edL~i~~d--E~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~e~n~~~nsp~F~~RF~EAL~~ 570 (596)
+.+.. . +.++ +++++|.....++..... .......+|+.+ +-|+|.-.++... +...++....+.+.=
T Consensus 101 ~~l~~-~--~~~~~~D~V~~~~~~p~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~l~i~~----~~~~~~~~~~~~~~~ 171 (202)
T PRK00121 101 EVLLD-M--FPDGSLDRIYLNFPDPWPKKRHHK--RRLVQPEFLALYARKLKPGGEIHFAT----DWEGYAEYMLEVLSA 171 (202)
T ss_pred HHHHH-H--cCccccceEEEECCCCCCCccccc--cccCCHHHHHHHHHHcCCCCEEEEEc----CCHHHHHHHHHHHHh
Confidence 43320 0 1122 345544322111110000 000135677776 5779977665422 333444555555544
Q ss_pred HH
Q 045079 571 FS 572 (596)
Q Consensus 571 YS 572 (596)
|.
T Consensus 172 ~g 173 (202)
T PRK00121 172 EG 173 (202)
T ss_pred Cc
Confidence 43
No 49
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=64.61 E-value=79 Score=30.94 Aligned_cols=100 Identities=20% Similarity=0.346 Sum_probs=52.3
Q ss_pred cCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCC--cEEEEeeccc
Q 045079 415 ATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNV--PFEYNVIAQK 492 (596)
Q Consensus 415 ~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gV--PFeF~~Ia~~ 492 (596)
....+|+|+|.+.|.- ...|+.+ + .++||||.. ...++.+.+++. ..++ ...|.. ..
T Consensus 62 ~~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s------~~~i~~a~~~~~----~~~~~~~i~~~~--~d 120 (230)
T PRK07580 62 LTGLRILDAGCGVGSL----SIPLARR--G---AKVVASDIS------PQMVEEARERAP----EAGLAGNITFEV--GD 120 (230)
T ss_pred CCCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECC------HHHHHHHHHHHH----hcCCccCcEEEE--cC
Confidence 3456899999999853 3344443 2 349999973 244555544433 2333 233332 12
Q ss_pred ccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEee
Q 045079 493 WETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHG 549 (596)
Q Consensus 493 ~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~ 549 (596)
++.. .+..=+|-|...|+|+.++. ...+++.+.++.+..+++.
T Consensus 121 ~~~~--------~~~fD~v~~~~~l~~~~~~~------~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 121 LESL--------LGRFDTVVCLDVLIHYPQED------AARMLAHLASLTRGSLIFT 163 (230)
T ss_pred chhc--------cCCcCEEEEcchhhcCCHHH------HHHHHHHHHhhcCCeEEEE
Confidence 2211 11122233445567766542 3577787776655544443
No 50
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=63.71 E-value=41 Score=32.86 Aligned_cols=130 Identities=11% Similarity=0.072 Sum_probs=62.4
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWET 495 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~ 495 (596)
..-.|+|+|.+.|. ++..||.+. |...++||+.. ...++.+.+++ +..|+. ..+.+...+.+
T Consensus 16 ~~~~ilDiGcG~G~----~~~~la~~~---p~~~v~gvD~~------~~~l~~a~~~~----~~~~l~-ni~~i~~d~~~ 77 (194)
T TIGR00091 16 KAPLHLEIGCGKGR----FLIDMAKQN---PDKNFLGIEIH------TPIVLAANNKA----NKLGLK-NLHVLCGDANE 77 (194)
T ss_pred CCceEEEeCCCccH----HHHHHHHhC---CCCCEEEEEee------HHHHHHHHHHH----HHhCCC-CEEEEccCHHH
Confidence 33479999999884 444555443 55789999973 23454444443 344554 22333333332
Q ss_pred cCcccccccCC--CeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEeeeecCCCCcchhHHHHHHHHHHH
Q 045079 496 IRLEDFKIDRD--EVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHGISNGTYNAPFFLARFREALFHF 571 (596)
Q Consensus 496 i~~edL~i~~d--E~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~e~n~~~nsp~F~~RF~EAL~~Y 571 (596)
+.... ...+ ..|++|+. .+..-.......--...+|+.+ |.|+|.-.+.... ........+++++..+
T Consensus 78 ~~~~~--~~~~~~d~v~~~~p--dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t----d~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 78 LLDKF--FPDGSLSKVFLNFP--DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT----DNEPLFEDMLKVLSEN 148 (194)
T ss_pred HHHhh--CCCCceeEEEEECC--CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe----CCHHHHHHHHHHHHhC
Confidence 21111 1111 24445531 1100000000000014678876 6669988776544 3333445556666554
No 51
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=62.59 E-value=1.1e+02 Score=31.85 Aligned_cols=112 Identities=20% Similarity=0.325 Sum_probs=62.5
Q ss_pred HhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEE-e
Q 045079 410 KLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYN-V 488 (596)
Q Consensus 410 eA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~-~ 488 (596)
..+....++-+...|++.|--.+- + .--|-.|||+||+ .+..++..+. .+|+. .|.+|- -
T Consensus 70 ~~~gk~~K~~vLEvgcGtG~Nfkf----y----~~~p~~svt~lDp-------n~~mee~~~k--s~~E~--k~~~~~~f 130 (252)
T KOG4300|consen 70 YFLGKSGKGDVLEVGCGTGANFKF----Y----PWKPINSVTCLDP-------NEKMEEIADK--SAAEK--KPLQVERF 130 (252)
T ss_pred HHhcccCccceEEecccCCCCccc----c----cCCCCceEEEeCC-------cHHHHHHHHH--HHhhc--cCcceEEE
Confidence 344446788899999998732211 0 0126789999985 4556665433 23333 565554 3
Q ss_pred ecccccccC-cccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhh-CCcEEEeeeecC
Q 045079 489 IAQKWETIR-LEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRI-NPDVFIHGISNG 553 (596)
Q Consensus 489 Ia~~~E~i~-~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L-~P~Vfv~~e~n~ 553 (596)
+.+..|++. +.| +-+=+|-|.|.|=.. .+|+ ..|+.+|++ +|+-.++-...+
T Consensus 131 vva~ge~l~~l~d-----~s~DtVV~TlvLCSv-------e~~~-k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 131 VVADGENLPQLAD-----GSYDTVVCTLVLCSV-------EDPV-KQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred EeechhcCccccc-----CCeeeEEEEEEEecc-------CCHH-HHHHHHHHhcCCCcEEEEEecc
Confidence 334555554 333 333344444444222 3455 578888775 999876655544
No 52
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=61.96 E-value=2.8 Score=35.73 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 045079 421 IDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQ 457 (596)
Q Consensus 421 IDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq 457 (596)
+|+|.+.|.==..|++.+ |..++||+|...
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~ 30 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISP 30 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSS
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCH
Confidence 478888876555555555 789999999854
No 53
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=61.24 E-value=81 Score=34.00 Aligned_cols=148 Identities=13% Similarity=0.165 Sum_probs=87.0
Q ss_pred HHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EE
Q 045079 407 TIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FE 485 (596)
Q Consensus 407 aIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-Fe 485 (596)
.|..++. ....|||||.+.|..=..||++|.. .+. .++-.+||.. .+.|+++.++|. .+ ..| .+
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~-~~~--~~~Y~plDIS------~~~L~~a~~~L~--~~--~~p~l~ 133 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALER-QKK--SVDYYALDVS------RSELQRTLAELP--LG--NFSHVR 133 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHh-cCC--CceEEEEECC------HHHHHHHHHhhh--hc--cCCCeE
Confidence 3444442 3347999999999999999999973 222 3788999984 467899988887 11 245 77
Q ss_pred EEeecccccc----cCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHh--hCCcE-EEeeee-------
Q 045079 486 YNVIAQKWET----IRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKR--INPDV-FIHGIS------- 551 (596)
Q Consensus 486 F~~Ia~~~E~----i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~--L~P~V-fv~~e~------- 551 (596)
+++|....++ +.... +...-.++.-.-..+.|+..+. ...||+.|++ |+|.= |+++.-
T Consensus 134 v~~l~gdy~~~l~~l~~~~--~~~~~r~~~flGSsiGNf~~~e------a~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~ 205 (319)
T TIGR03439 134 CAGLLGTYDDGLAWLKRPE--NRSRPTTILWLGSSIGNFSRPE------AAAFLAGFLATALSPSDSFLIGLDGCKDPDK 205 (319)
T ss_pred EEEEEecHHHHHhhccccc--ccCCccEEEEeCccccCCCHHH------HHHHHHHHHHhhCCCCCEEEEecCCCCCHHH
Confidence 7777643322 11111 1111223332234455554321 3479999987 88854 444331
Q ss_pred -cCCCCcch-h-HHHHHHHHHHHHHHhhh
Q 045079 552 -NGTYNAPF-F-LARFREALFHFSAMFDI 577 (596)
Q Consensus 552 -n~~~nsp~-F-~~RF~EAL~~YSAlFDs 577 (596)
.+.||.+. . ....++.|.|--..++.
T Consensus 206 l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 206 VLRAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 22466542 2 22346777777666654
No 54
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=59.81 E-value=82 Score=33.83 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=24.9
Q ss_pred HHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecC
Q 045079 408 IRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIEL 455 (596)
Q Consensus 408 IleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~ 455 (596)
|+..+...+.-+|+|+|.+.|. ++..++.+ |+ -+++|||+
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~--~~v~GiDp 152 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA--KSLVGIDP 152 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC--CEEEEEcC
Confidence 4444433334489999999996 33344433 33 27899996
No 55
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=59.62 E-value=82 Score=32.10 Aligned_cols=100 Identities=19% Similarity=0.385 Sum_probs=50.9
Q ss_pred eeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccc
Q 045079 417 RLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQKWET 495 (596)
Q Consensus 417 ~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~~E~ 495 (596)
.=+|+|+|.+.|.- ..++ +... | +.-+|||||.. .+.++.+.++. +.++++ .+| +...+++
T Consensus 78 g~~VLDiG~G~G~~-~~~~---a~~~-g-~~~~v~gvD~s------~~~l~~A~~~~----~~~g~~~v~~--~~~d~~~ 139 (272)
T PRK11873 78 GETVLDLGSGGGFD-CFLA---ARRV-G-PTGKVIGVDMT------PEMLAKARANA----RKAGYTNVEF--RLGEIEA 139 (272)
T ss_pred CCEEEEeCCCCCHH-HHHH---HHHh-C-CCCEEEEECCC------HHHHHHHHHHH----HHcCCCCEEE--EEcchhh
Confidence 34899999998742 2222 2221 2 34589999973 23455444332 344543 232 2233444
Q ss_pred cCcccccccCC--CeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEe
Q 045079 496 IRLEDFKIDRD--EVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIH 548 (596)
Q Consensus 496 i~~edL~i~~d--E~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~ 548 (596)
+.. ..+ .+|+.||. +|+..|. ...+=...|-|+|.-.++
T Consensus 140 l~~-----~~~~fD~Vi~~~v--~~~~~d~-------~~~l~~~~r~LkpGG~l~ 180 (272)
T PRK11873 140 LPV-----ADNSVDVIISNCV--INLSPDK-------ERVFKEAFRVLKPGGRFA 180 (272)
T ss_pred CCC-----CCCceeEEEEcCc--ccCCCCH-------HHHHHHHHHHcCCCcEEE
Confidence 332 222 35555655 4555542 233444557789986443
No 56
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=58.46 E-value=33 Score=35.50 Aligned_cols=56 Identities=14% Similarity=0.254 Sum_probs=37.0
Q ss_pred hcccchhhhH-HHHhHHHHHhh----hhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 392 SAWPFIRMSY-LFANQTIRKLA----EKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 392 ~~~Pf~kfa~-~~ANqaIleA~----~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
...|=.+++. |..++.|++.+ .-.+.-+|+|+|.|.| .+...|+.+ ++ ++||||..
T Consensus 13 ~~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G----~lt~~L~~~--~~---~v~avE~d 73 (272)
T PRK00274 13 GHRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLG----ALTEPLLER--AA---KVTAVEID 73 (272)
T ss_pred CCCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCcc----HHHHHHHHh--CC---cEEEEECC
Confidence 3456666666 55665555543 3345568999999988 456666666 22 89999974
No 57
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=58.44 E-value=52 Score=32.27 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=50.9
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRL 498 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~ 498 (596)
+|+|+|.+.|. +...++++. |..++|||+.. .+.++.+.+++ +..|+.-....+....+....
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s------~~~~~~a~~~~----~~~gl~~~i~~~~~d~~~~~~ 64 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTIS------PEQAEVGRERI----RALGLQGRIRIFYRDSAKDPF 64 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECC------HHHHHHHHHHH----HhcCCCcceEEEecccccCCC
Confidence 68999998874 344555543 33689999973 34455444443 333444322222222211111
Q ss_pred ccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHH-hhCCcEEEe
Q 045079 499 EDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIK-RINPDVFIH 548 (596)
Q Consensus 499 edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir-~L~P~Vfv~ 548 (596)
.. .=++ |-+...++|+.+ ...+|+.++ -|+|.-.++
T Consensus 65 ~~----~fD~--I~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 65 PD----TYDL--VFGFEVIHHIKD--------KMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred CC----CCCE--eehHHHHHhCCC--------HHHHHHHHHHHcCCCCEEE
Confidence 11 1122 234455666643 246777664 468886544
No 58
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=56.56 E-value=91 Score=34.22 Aligned_cols=107 Identities=15% Similarity=0.299 Sum_probs=55.7
Q ss_pred HHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEE
Q 045079 407 TIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEY 486 (596)
Q Consensus 407 aIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF 486 (596)
.|++.+.-...-+|+|+|.+.|. +...++++.| .++|||+.. .+.++.+.++. + ++.++|
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS------~~~l~~A~~~~----~--~l~v~~ 217 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTIS------AEQQKLAQERC----A--GLPVEI 217 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCC------HHHHHHHHHHh----c--cCeEEE
Confidence 34444433344589999997663 4455665543 489999973 34455554443 2 333443
Q ss_pred EeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEee
Q 045079 487 NVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHG 549 (596)
Q Consensus 487 ~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~ 549 (596)
.. ..+.++ . ..=++|+ +...++|+.+. ..+.+++.+ +-|+|.-.++.
T Consensus 218 ~~--~D~~~l-----~-~~fD~Iv--s~~~~ehvg~~------~~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 218 RL--QDYRDL-----N-GQFDRIV--SVGMFEHVGPK------NYRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred EE--Cchhhc-----C-CCCCEEE--EeCchhhCChH------HHHHHHHHHHHHcCCCcEEEE
Confidence 22 223222 1 0112332 33445676543 134566665 55699876544
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=55.91 E-value=1.7e+02 Score=28.84 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=58.9
Q ss_pred eeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccc
Q 045079 417 RLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQKWET 495 (596)
Q Consensus 417 ~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~~E~ 495 (596)
.-.|+|+|.+.|. .++. ++.+. |..++||||.. .+.++.+ .+.++..+++ ++|.. ...++
T Consensus 46 g~~VLDiGcGtG~--~al~--la~~~---~~~~V~giD~s------~~~l~~A----~~~~~~~~l~~i~~~~--~d~~~ 106 (187)
T PRK00107 46 GERVLDVGSGAGF--PGIP--LAIAR---PELKVTLVDSL------GKKIAFL----REVAAELGLKNVTVVH--GRAEE 106 (187)
T ss_pred CCeEEEEcCCCCH--HHHH--HHHHC---CCCeEEEEeCc------HHHHHHH----HHHHHHcCCCCEEEEe--ccHhh
Confidence 4579999999983 2222 22221 34699999963 2334433 3345555664 44432 33333
Q ss_pred cCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEeeeecCCCCcchhHHHHHHH
Q 045079 496 IRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHGISNGTYNAPFFLARFREA 567 (596)
Q Consensus 496 i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~e~n~~~nsp~F~~RF~EA 567 (596)
+.. -.+=++++.|+. ...+.+++.+ +.|+|.-.++..... .+..++.++
T Consensus 107 ~~~----~~~fDlV~~~~~--------------~~~~~~l~~~~~~LkpGG~lv~~~~~-----~~~~~l~~~ 156 (187)
T PRK00107 107 FGQ----EEKFDVVTSRAV--------------ASLSDLVELCLPLLKPGGRFLALKGR-----DPEEEIAEL 156 (187)
T ss_pred CCC----CCCccEEEEccc--------------cCHHHHHHHHHHhcCCCeEEEEEeCC-----ChHHHHHHH
Confidence 322 123356666541 1234566664 788999887766422 245555543
No 60
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=55.43 E-value=1.4e+02 Score=32.44 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=59.4
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRL 498 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~ 498 (596)
+|+|+|.+.|. +-..|+.+. |..++|+||.. ...++.+.+++.. .++..++.. ....
T Consensus 199 ~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis------~~Al~~A~~nl~~----n~l~~~~~~--~D~~---- 255 (342)
T PRK09489 199 KVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVS------AAALESSRATLAA----NGLEGEVFA--SNVF---- 255 (342)
T ss_pred eEEEeccCcCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHHHH----cCCCCEEEE--cccc----
Confidence 69999999996 334455442 45789999973 3556666555543 455555432 1111
Q ss_pred ccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHH-HHhhCCcEEEeeeecCC
Q 045079 499 EDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDL-IKRINPDVFIHGISNGT 554 (596)
Q Consensus 499 edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~-Ir~L~P~Vfv~~e~n~~ 554 (596)
+.+ -.+=++|+.|-.| |...+... .....+++. .+.|+|.-.+..+.|.-
T Consensus 256 ~~~-~~~fDlIvsNPPF--H~g~~~~~---~~~~~~i~~a~~~LkpgG~L~iVan~~ 306 (342)
T PRK09489 256 SDI-KGRFDMIISNPPF--HDGIQTSL---DAAQTLIRGAVRHLNSGGELRIVANAF 306 (342)
T ss_pred ccc-CCCccEEEECCCc--cCCccccH---HHHHHHHHHHHHhcCcCCEEEEEEeCC
Confidence 111 1223577777654 43332211 112344444 56689998777666543
No 61
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=53.50 E-value=20 Score=37.19 Aligned_cols=109 Identities=22% Similarity=0.320 Sum_probs=66.2
Q ss_pred hcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccc
Q 045079 414 KATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKW 493 (596)
Q Consensus 414 g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~ 493 (596)
-+.--.|+|+|++-|-+=-- |++|- |--.|||||.. .+-|+++.+||- ++-|+
T Consensus 28 ~~~~~~v~DLGCGpGnsTel----L~~Rw---P~A~i~GiDsS------~~Mla~Aa~rlp------~~~f~-------- 80 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTEL----LARRW---PDAVITGIDSS------PAMLAKAAQRLP------DATFE-------- 80 (257)
T ss_pred ccccceeeecCCCCCHHHHH----HHHhC---CCCeEeeccCC------HHHHHHHHHhCC------CCcee--------
Confidence 34556799999999976544 44444 55689999963 355555544442 23332
Q ss_pred cccCcccccc-cCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeeeecCCCCcch
Q 045079 494 ETIRLEDFKI-DRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPF 559 (596)
Q Consensus 494 E~i~~edL~i-~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e~n~~~nsp~ 559 (596)
.-++.+++- .+-.+|.-|..|+ -|+|- -+.+=+++-.|.|.-++-+-.-.++..|.
T Consensus 81 -~aDl~~w~p~~~~dllfaNAvlq--WlpdH-------~~ll~rL~~~L~Pgg~LAVQmPdN~deps 137 (257)
T COG4106 81 -EADLRTWKPEQPTDLLFANAVLQ--WLPDH-------PELLPRLVSQLAPGGVLAVQMPDNLDEPS 137 (257)
T ss_pred -cccHhhcCCCCccchhhhhhhhh--hcccc-------HHHHHHHHHhhCCCceEEEECCCccCchh
Confidence 222222322 1235677777654 46653 24566788899999988776666666554
No 62
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=51.42 E-value=42 Score=31.18 Aligned_cols=41 Identities=27% Similarity=0.510 Sum_probs=27.8
Q ss_pred hhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 413 EKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 413 ~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
...+..+|||+|-|.|.==-.|-..|... .|.++|+|||..
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~ 62 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCN 62 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECC
Confidence 44788999999999985222222233222 278999999974
No 63
>PRK06922 hypothetical protein; Provisional
Probab=50.87 E-value=86 Score=37.27 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=57.0
Q ss_pred eeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccccccc
Q 045079 417 RLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETI 496 (596)
Q Consensus 417 ~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i 496 (596)
.-.|+|+|.+.|. ++..|+.+. |..++||||.. ...++.+..++ ...|.++++ +.....++
T Consensus 419 g~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS------~~MLe~Ararl----~~~g~~ie~--I~gDa~dL 479 (677)
T PRK06922 419 GDTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDIS------ENVIDTLKKKK----QNEGRSWNV--IKGDAINL 479 (677)
T ss_pred CCEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECC------HHHHHHHHHHh----hhcCCCeEE--EEcchHhC
Confidence 4589999999983 445566542 46899999984 23455554443 233455444 22222221
Q ss_pred CcccccccCCCeEEEEeeccccCCCC----CCc--CCCCcHHHHHHH-HHhhCCcEEEe
Q 045079 497 RLEDFKIDRDEVTVVNCVHRMKNLPD----DTV--VDSSPRDAVLDL-IKRINPDVFIH 548 (596)
Q Consensus 497 ~~edL~i~~dE~LaVN~~f~Lh~L~D----esv--~~~spRd~vL~~-Ir~L~P~Vfv~ 548 (596)
. + .+.++.+=+|-+.+.+|++.+ +.. ....+ ..+|+. .|.|+|.-.++
T Consensus 480 p--~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl-~kiLreI~RVLKPGGrLI 534 (677)
T PRK06922 480 S--S-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVI-KKGLQSAYEVLKPGGRII 534 (677)
T ss_pred c--c-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHH-HHHHHHHHHHcCCCcEEE
Confidence 1 0 123344444545566777642 110 00112 345555 47889986543
No 64
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=47.65 E-value=1.8e+02 Score=29.02 Aligned_cols=107 Identities=12% Similarity=0.063 Sum_probs=58.6
Q ss_pred eEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccC
Q 045079 418 LHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIR 497 (596)
Q Consensus 418 vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~ 497 (596)
-.|+|+|.+.| ..-|.+|+.. . -+||+|+.. .+.++.+.+. ++..|+. ....+...+...-
T Consensus 55 ~~vLDl~~GsG---~l~l~~lsr~---a--~~V~~vE~~------~~a~~~a~~N----l~~~~~~-~v~~~~~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSG---ALGLEALSRY---A--AGATLLEMD------RAVAQQLIKN----LATLKAG-NARVVNTNALSFL 115 (199)
T ss_pred CEEEEcCCCcc---HHHHHHHHcC---C--CEEEEEECC------HHHHHHHHHH----HHHhCCC-cEEEEEchHHHHH
Confidence 47899999988 3334456542 1 489999863 2333333333 3334442 1222222222110
Q ss_pred cccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHh---hCCcEEEeeeecCCCC
Q 045079 498 LEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKR---INPDVFIHGISNGTYN 556 (596)
Q Consensus 498 ~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~---L~P~Vfv~~e~n~~~n 556 (596)
.. .. .+=++|++|=.|+- .-...++..|.. +.|+-+|.++.+...+
T Consensus 116 ~~-~~-~~fDlV~~DPPy~~-----------g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 116 AQ-PG-TPHNVVFVDPPFRK-----------GLLEETINLLEDNGWLADEALIYVESEVENG 164 (199)
T ss_pred hh-cC-CCceEEEECCCCCC-----------ChHHHHHHHHHHCCCcCCCcEEEEEecCCCC
Confidence 00 11 12357888866641 123568888887 6999999988766543
No 65
>PF13552 DUF4127: Protein of unknown function (DUF4127)
Probab=45.51 E-value=25 Score=39.98 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=55.9
Q ss_pred cccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEee---e-----ecCCCCcchhHHHHHHHHHHHHHHhhhhhcCCCCCCH
Q 045079 516 RMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHG---I-----SNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDA 587 (596)
Q Consensus 516 ~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~---e-----~n~~~nsp~F~~RF~EAL~~YSAlFDsLdat~pr~~~ 587 (596)
|.|++..+.+ --|-.+|+.||+.+|++=|.+ + .+++...|..-..+...++.|+.|.|-.+.-.+.+..
T Consensus 78 R~~~~~~~~~---~~rl~~l~~lk~~~p~~~iyaf~~ImR~~~~~~~~eep~yy~~yg~~i~~~~~l~dk~~~~~~~e~~ 154 (497)
T PF13552_consen 78 RIHHLSLEEA---LERLERLRELKARNPNLPIYAFSTIMRTPPYSSSDEEPDYYADYGRKIFRYSQLLDKEEGLSEEERK 154 (497)
T ss_pred cCCCCCHHHH---HHHHHHHHHHHHHCCCCeEEEEEEEeccCCCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhcchhhHH
Confidence 6677665543 246788999999999964331 1 2355667888899999999999999999954455666
Q ss_pred HHHhhcccC
Q 045079 588 ERMLFEREI 596 (596)
Q Consensus 588 eR~~iE~e~ 596 (596)
+...++++|
T Consensus 155 el~~l~~~I 163 (497)
T PF13552_consen 155 ELAALKAEI 163 (497)
T ss_pred HHHHHHhhC
Confidence 666666554
No 66
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=44.45 E-value=1e+02 Score=31.76 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=24.1
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
..-+|+|+|.+.|.-...|.+.+... ....++|||..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s 121 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI----TTMQLFGLDIS 121 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCC
Confidence 44679999999997544444444221 12579999973
No 67
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=44.36 E-value=1.3e+02 Score=33.78 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=45.2
Q ss_pred HHHHHHHhcCCCCCC--eEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCcccc
Q 045079 432 PCLIQILSSRPTGPP--MLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDF 501 (596)
Q Consensus 432 p~Liq~LA~R~gGPP--~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~edL 501 (596)
|.||+.|..++..-| +|.+--|+ .++++.++....++++..|.+++|..-...-|.++-.|+
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did--------~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADf 77 (425)
T cd05197 14 PELVSGLLKTPEELPISEVTLYDID--------EERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADF 77 (425)
T ss_pred HHHHHHHHcChhhCCCCEEEEEcCC--------HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence 689999999985444 45555554 477888888899999999999988776554444444443
No 68
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=43.15 E-value=1.9e+02 Score=28.50 Aligned_cols=55 Identities=15% Similarity=0.240 Sum_probs=32.6
Q ss_pred HHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHH
Q 045079 408 IRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLK 474 (596)
Q Consensus 408 IleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~ 474 (596)
+++++.-...-+|+|+|.+.|+.=..|.+.+. +.-+++||+.. .+.++.+.+++.
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~------~~g~V~~iD~~------~~~~~~a~~~l~ 118 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSGYQAAVCAEAIE------RRGKVYTVEIV------KELAIYAAQNIE 118 (205)
T ss_pred HHHhcCCCCCCEEEEECcCccHHHHHHHHhcC------CCCEEEEEeCC------HHHHHHHHHHHH
Confidence 44555434456899999999875444444331 12379999973 234555555553
No 69
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=42.46 E-value=27 Score=30.63 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=27.1
Q ss_pred EeecCCCCCCCCh----------------HHHHHHHHHHHHHHhhcCCcEE
Q 045079 451 TGIELPQPGFRPA----------------ERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 451 TgI~~pq~gfrp~----------------~~leetG~rL~~~A~~~gVPFe 485 (596)
-=|+-|+++.+|. +.+.+.-..|.+.|+.-|||||
T Consensus 19 iYIG~P~~~~HPl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~fe 69 (82)
T PF11020_consen 19 IYIGEPKPDHHPLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFE 69 (82)
T ss_pred EEeCCCCCCCCchHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHH
Confidence 3467777777764 3577778899999999999985
No 70
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=40.04 E-value=1.4e+02 Score=28.20 Aligned_cols=41 Identities=27% Similarity=0.342 Sum_probs=27.8
Q ss_pred HHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 407 TIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 407 aIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
.|++.+.-...-+|+|+|.|.|. |...|+.+ + -++|+|+..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~ 44 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEID 44 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECC
Confidence 45565543444589999999885 55555655 2 389999974
No 71
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=39.82 E-value=2.1e+02 Score=28.49 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=41.8
Q ss_pred CeeEE-EEcee---ccccch---HHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhc----CCcE
Q 045079 416 TRLHI-IDFGI---CYGFQW---PCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERF----NVPF 484 (596)
Q Consensus 416 ~~vHI-IDfgI---~~G~QW---p~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~----gVPF 484 (596)
-+||| ||-|. .+|+.| +.+++.+.. -|.|+|.||-.--+.....+...+.-+++.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36898 89884 589864 455555543 245888898541111111233555566666666654 5777
Q ss_pred EEEeec
Q 045079 485 EYNVIA 490 (596)
Q Consensus 485 eF~~Ia 490 (596)
++--+-
T Consensus 193 ~~is~G 198 (222)
T cd00635 193 KELSMG 198 (222)
T ss_pred CEEECc
Confidence 776554
No 72
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=39.48 E-value=76 Score=33.64 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=24.6
Q ss_pred HHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 408 IRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 408 IleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
|++++.-...=.|+|+|.+.|.-- ..|+.+. -++++|+..
T Consensus 28 Iv~~~~~~~~~~VLEIG~G~G~LT----~~Ll~~~-----~~V~avEiD 67 (294)
T PTZ00338 28 IVEKAAIKPTDTVLEIGPGTGNLT----EKLLQLA-----KKVIAIEID 67 (294)
T ss_pred HHHhcCCCCcCEEEEecCchHHHH----HHHHHhC-----CcEEEEECC
Confidence 334443334457999999988643 4444442 268999974
No 73
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=36.46 E-value=2.7e+02 Score=29.49 Aligned_cols=99 Identities=12% Similarity=0.167 Sum_probs=55.3
Q ss_pred eeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccc
Q 045079 417 RLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQKWET 495 (596)
Q Consensus 417 ~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~~E~ 495 (596)
.-+|+|+|.+.|. +--.||.+ + -+++|||.. ...++.+.+ -|+..|++ .+|.. .+.++
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s------~~av~~A~~----n~~~~~l~~v~~~~--~D~~~ 232 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEIS------AEAIACAKQ----SAAELGLTNVQFQA--LDSTQ 232 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCC------HHHHHHHHH----HHHHcCCCceEEEE--cCHHH
Confidence 3589999999984 33445543 2 379999973 244554433 34455664 55543 23332
Q ss_pred cCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeee
Q 045079 496 IRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGI 550 (596)
Q Consensus 496 i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e 550 (596)
+... .. ..-++|++|=.. ..--..++..|.+++|+-+|.+.
T Consensus 233 ~~~~-~~-~~~D~Vv~dPPr------------~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 233 FATA-QG-EVPDLVLVNPPR------------RGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred HHHh-cC-CCCeEEEECCCC------------CCccHHHHHHHHHcCCCeEEEEE
Confidence 2111 10 112567776210 01124688899999999887763
No 74
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=36.08 E-value=2.3e+02 Score=30.95 Aligned_cols=100 Identities=12% Similarity=0.111 Sum_probs=52.3
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWET 495 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~ 495 (596)
...+|+|+|.+.|.-... |+++.++ .++|+||.. .+.++.+.++. ..-++.| +...+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~----La~~~~~---~~VtgVD~S------~~mL~~A~~k~----~~~~i~~----i~gD~e~ 171 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLG----IVKHVDA---KNVTILDQS------PHQLAKAKQKE----PLKECKI----IEGDAED 171 (340)
T ss_pred CCCEEEEEecCCcHHHHH----HHHHCCC---CEEEEEECC------HHHHHHHHHhh----hccCCeE----EeccHHh
Confidence 457999999999974433 3333222 589999963 23344443332 1123332 3334444
Q ss_pred cCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEee
Q 045079 496 IRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHG 549 (596)
Q Consensus 496 i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~ 549 (596)
+...+ ..=++++.+ ..|||+.|. +.+|+.+ |-|+|.-.++.
T Consensus 172 lp~~~---~sFDvVIs~--~~L~~~~d~--------~~~L~e~~rvLkPGG~LvI 213 (340)
T PLN02490 172 LPFPT---DYADRYVSA--GSIEYWPDP--------QRGIKEAYRVLKIGGKACL 213 (340)
T ss_pred CCCCC---CceeEEEEc--ChhhhCCCH--------HHHHHHHHHhcCCCcEEEE
Confidence 33211 111344443 456676642 3466655 66799866543
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=35.15 E-value=1.1e+02 Score=26.37 Aligned_cols=32 Identities=22% Similarity=0.074 Sum_probs=21.7
Q ss_pred eEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 418 LHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 418 vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
-+|+|+|.+.|.. ...|+++. |..++||||..
T Consensus 21 ~~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s 52 (124)
T TIGR02469 21 DVLWDIGAGSGSI----TIEAARLV---PNGRVYAIERN 52 (124)
T ss_pred CEEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCC
Confidence 3899999998743 33334332 23789999973
No 76
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=34.72 E-value=72 Score=33.95 Aligned_cols=98 Identities=24% Similarity=0.454 Sum_probs=57.5
Q ss_pred EEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeeccc--ccccC
Q 045079 420 IIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQK--WETIR 497 (596)
Q Consensus 420 IIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~--~E~i~ 497 (596)
|+|+|.+-|. |=+-|| |.| --+||||.. .+.|+.+... +.++.+. =.+|+.+ .|+.+
T Consensus 93 ilDvGCGgGL----LSepLA-rlg----a~V~GID~s------~~~V~vA~~h-----~~~dP~~-~~~~~y~l~~~~~~ 151 (282)
T KOG1270|consen 93 ILDVGCGGGL----LSEPLA-RLG----AQVTGIDAS------DDMVEVANEH-----KKMDPVL-EGAIAYRLEYEDTD 151 (282)
T ss_pred EEEeccCccc----cchhhH-hhC----CeeEeeccc------HHHHHHHHHh-----hhcCchh-ccccceeeehhhcc
Confidence 9999999884 234454 333 578999973 3556555433 2222222 1222222 23344
Q ss_pred cccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCc--EEEe
Q 045079 498 LEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPD--VFIH 548 (596)
Q Consensus 498 ~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~--Vfv~ 548 (596)
.+++. +..=||-|+-.|+|.-| |.+-.-..++.++|. +||-
T Consensus 152 ~E~~~---~~fDaVvcsevleHV~d-------p~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 152 VEGLT---GKFDAVVCSEVLEHVKD-------PQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred hhhcc---cccceeeeHHHHHHHhC-------HHHHHHHHHHHhCCCCceEee
Confidence 44432 44668889999999876 455455567888998 4553
No 77
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=34.16 E-value=2.5e+02 Score=28.37 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=58.2
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEee------
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVI------ 489 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~I------ 489 (596)
+.-.|+|.|.+.| .-+..||.+. ..+||||.. ...++. ++++.|++.+....
T Consensus 37 ~~~rvL~~gCG~G----~da~~LA~~G-----~~V~avD~s------~~Ai~~-------~~~~~~l~~~~~~~~~~~~~ 94 (218)
T PRK13255 37 AGSRVLVPLCGKS----LDMLWLAEQG-----HEVLGVELS------ELAVEQ-------FFAENGLTPQTRQSGEFEHY 94 (218)
T ss_pred CCCeEEEeCCCCh----HhHHHHHhCC-----CeEEEEccC------HHHHHH-------HHHHcCCCcccccccccccc
Confidence 3458899999988 2334466542 689999973 223332 34455555431100
Q ss_pred -cccccccCcccccccC---CCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHh-hCCc--EEEeee--ecCCCCcchh
Q 045079 490 -AQKWETIRLEDFKIDR---DEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKR-INPD--VFIHGI--SNGTYNAPFF 560 (596)
Q Consensus 490 -a~~~E~i~~edL~i~~---dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~-L~P~--Vfv~~e--~n~~~nsp~F 560 (596)
..++.-+..+-+...+ +.+=.|...-.|+|+..+ -|..++..|.+ |+|. +++++. .+...+.|.|
T Consensus 95 ~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~------~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~ 168 (218)
T PRK13255 95 QAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEE------MRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPF 168 (218)
T ss_pred ccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHH------HHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCC
Confidence 0111101111111111 122233323345677643 47888888866 6999 555333 3334455554
No 78
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=32.44 E-value=3.9e+02 Score=29.75 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=55.4
Q ss_pred cCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccc
Q 045079 415 ATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQKW 493 (596)
Q Consensus 415 ~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~~ 493 (596)
...-+|+|+|.+.|. +--.||.+. -+++|||.. .+.++.+.+++ +..|+. .+|. ..++
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s------~~al~~A~~n~----~~~~~~~v~~~--~~d~ 354 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGV------EAMVERARENA----RRNGLDNVTFY--HANL 354 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCC------HHHHHHHHHHH----HHcCCCceEEE--EeCh
Confidence 344689999999984 333455542 389999973 34565554433 334443 3443 2333
Q ss_pred cccCcccccc--cCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeee
Q 045079 494 ETIRLEDFKI--DRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGI 550 (596)
Q Consensus 494 E~i~~edL~i--~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e 550 (596)
++.- ..+.. ..=++|++|=.+. -.+.++..|.+++|+-+|.+.
T Consensus 355 ~~~l-~~~~~~~~~fD~Vi~dPPr~-------------g~~~~~~~l~~~~~~~ivyvS 399 (443)
T PRK13168 355 EEDF-TDQPWALGGFDKVLLDPPRA-------------GAAEVMQALAKLGPKRIVYVS 399 (443)
T ss_pred HHhh-hhhhhhcCCCCEEEECcCCc-------------ChHHHHHHHHhcCCCeEEEEE
Confidence 2211 11111 1124666653221 124677999999999988763
No 79
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=32.05 E-value=67 Score=32.34 Aligned_cols=53 Identities=21% Similarity=0.277 Sum_probs=35.9
Q ss_pred HHhhhhcCeeEEEEceeccc---cchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHH
Q 045079 409 RKLAEKATRLHIIDFGICYG---FQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYC 477 (596)
Q Consensus 409 leA~~g~~~vHIIDfgI~~G---~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A 477 (596)
+-+++=.+.=|++|+|.+.| .+|. ++ .|+.|+++|+- ..++++-+.+.+.+|.
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~---------~p~~~v~AIe~------~~~a~~~~~~N~~~fg 82 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA-LA---------GPSGRVIAIER------DEEALELIERNAARFG 82 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH-Hh---------CCCceEEEEec------CHHHHHHHHHHHHHhC
Confidence 34444445559999999987 5776 22 37899999984 3466776666665554
No 80
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=31.77 E-value=8.3e+02 Score=27.95 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHH-cC--C-HHHHHHHHHHHhhcc------CCCCChhhHHHHHHHHHHHHHHcCC------CCCCccc-
Q 045079 311 LRGLLTLCAQAVA-SN--D-QRTANEQLKQIRRHS------SAFGDGTQRLAHYFADALEARLLGA------HTPMHTH- 373 (596)
Q Consensus 311 L~~LLl~CAqAVa-~~--d-~~~A~~lL~~I~q~s------Sp~GD~~QRLA~yFaeAL~aRL~gt------g~~~y~~- 373 (596)
+..+|..+.+.+. +| + ...|.-||..+-... ...-.-+......|.+.+++|..|. |...+..
T Consensus 5 ~~~~l~~~~~~l~~~g~~~~~~~a~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~ 84 (506)
T PRK01544 5 IKQILSDATDKLNKIGISSPQLEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSR 84 (506)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCc
Confidence 3455555555553 22 2 345777777664321 1111223344578999999999873 3332222
Q ss_pred --------CCCCCChHHHHH-HHHHHhhc--ccchhhhHHHHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCC
Q 045079 374 --------ISCRTSAADILK-AYQMSLSA--WPFIRMSYLFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRP 442 (596)
Q Consensus 374 --------ls~~~s~~d~lk-Ay~lf~~~--~Pf~kfa~~~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~ 442 (596)
|-+|+....+.. |.+.+... .|....-..++++--+......+...|+|+|.+.| ++.-.|+.+-
T Consensus 85 ~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG----~iai~la~~~ 160 (506)
T PRK01544 85 EFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSG----CIAISLLCEL 160 (506)
T ss_pred EEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchh----HHHHHHHHHC
Confidence 234455444432 22221100 01111100111111111111223357999999988 3333454432
Q ss_pred CCCCeEEEEeecCCCCCCCChHHHHHHHHHH
Q 045079 443 TGPPMLRITGIELPQPGFRPAERVEETGNRL 473 (596)
Q Consensus 443 gGPP~LRITgI~~pq~gfrp~~~leetG~rL 473 (596)
|..++||||.. ...++.+.+++
T Consensus 161 ---p~~~v~avDis------~~al~~A~~N~ 182 (506)
T PRK01544 161 ---PNANVIATDIS------LDAIEVAKSNA 182 (506)
T ss_pred ---CCCeEEEEECC------HHHHHHHHHHH
Confidence 34799999973 24455554443
No 81
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=31.27 E-value=1.9e+02 Score=27.51 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=63.3
Q ss_pred HHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCC
Q 045079 403 FANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNV 482 (596)
Q Consensus 403 ~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gV 482 (596)
.+...+++.+...+.-+|+|+|.+.|.- =-.|+.+ -|..++|++|.. ...++-+ .+-++..++
T Consensus 18 ~~t~lL~~~l~~~~~~~vLDlG~G~G~i----~~~la~~---~~~~~v~~vDi~------~~a~~~a----~~n~~~n~~ 80 (170)
T PF05175_consen 18 AGTRLLLDNLPKHKGGRVLDLGCGSGVI----SLALAKR---GPDAKVTAVDIN------PDALELA----KRNAERNGL 80 (170)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETSTTSHH----HHHHHHT---STCEEEEEEESB------HHHHHHH----HHHHHHTTC
T ss_pred HHHHHHHHHHhhccCCeEEEecCChHHH----HHHHHHh---CCCCEEEEEcCC------HHHHHHH----HHHHHhcCc
Confidence 3556777888776777899999999832 2233433 257889999973 2334433 233555566
Q ss_pred cEEEEeeccc-ccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHH-HHHHhhCCcEEEeeeec
Q 045079 483 PFEYNVIAQK-WETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVL-DLIKRINPDVFIHGISN 552 (596)
Q Consensus 483 PFeF~~Ia~~-~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL-~~Ir~L~P~Vfv~~e~n 552 (596)
.- .+.+... ++.+.. .+=++++.|=.+ |.-.++.. .....++ ..-+-|+|+-.+..+.+
T Consensus 81 ~~-v~~~~~d~~~~~~~-----~~fD~Iv~NPP~--~~~~~~~~---~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 81 EN-VEVVQSDLFEALPD-----GKFDLIVSNPPF--HAGGDDGL---DLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TT-EEEEESSTTTTCCT-----TCEEEEEE---S--BTTSHCHH---HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-cccccccccccccc-----cceeEEEEccch--hcccccch---hhHHHHHHHHHHhccCCCEEEEEee
Confidence 62 2333322 232221 122577777552 22222110 1223344 44567799986644443
No 82
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=31.08 E-value=1.2e+02 Score=37.06 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=27.9
Q ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHH-hh
Q 045079 307 EVVDLRGLLTLCAQAVASNDQRTANEQLKQI-RR 339 (596)
Q Consensus 307 ~~vdL~~LLl~CAqAVa~~d~~~A~~lL~~I-~q 339 (596)
-..+|.+||=.+-.+-+.||...|.+|+..| +|
T Consensus 135 l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq 168 (895)
T KOG2076|consen 135 LAPELRQLLGEANNLFARGDLEEAEEILMEVIKQ 168 (895)
T ss_pred cCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 5667999998888888999999999999865 44
No 83
>PRK14968 putative methyltransferase; Provisional
Probab=31.02 E-value=4.4e+02 Score=24.56 Aligned_cols=43 Identities=12% Similarity=0.244 Sum_probs=28.3
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHH
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRL 473 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL 473 (596)
+.-.|+|+|.+.|. +...|+.+ + .+||||+.. .+.++.+.+++
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~s------~~~~~~a~~~~ 65 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDIN------PYAVECAKCNA 65 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-c----ceEEEEECC------HHHHHHHHHHH
Confidence 44479999999997 45555655 2 589999963 34455554444
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=30.27 E-value=1.7e+02 Score=28.85 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=42.8
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeeccccc
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQKWE 494 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~~E 494 (596)
+..+|+|+|.+.| .+...++.+. |..++||||.. ...++.+. +.++..+++ .+| +...+.
T Consensus 87 ~~~~ilDig~G~G----~~~~~l~~~~---~~~~v~~iD~~------~~~~~~a~----~~~~~~~~~~~~~--~~~d~~ 147 (251)
T TIGR03534 87 GPLRVLDLGTGSG----AIALALAKER---PDARVTAVDIS------PEALAVAR----KNAARLGLDNVTF--LQSDWF 147 (251)
T ss_pred CCCeEEEEeCcHh----HHHHHHHHHC---CCCEEEEEECC------HHHHHHHH----HHHHHcCCCeEEE--EECchh
Confidence 3468999999988 3344444432 45699999963 23344333 334445665 333 333332
Q ss_pred ccCcccccccCCCeEEEEeeccc
Q 045079 495 TIRLEDFKIDRDEVTVVNCVHRM 517 (596)
Q Consensus 495 ~i~~edL~i~~dE~LaVN~~f~L 517 (596)
+. +.-.+=++|+.|-.|..
T Consensus 148 ~~----~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 148 EP----LPGGKFDLIVSNPPYIP 166 (251)
T ss_pred cc----CcCCceeEEEECCCCCc
Confidence 21 11123367787876653
No 85
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=30.09 E-value=58 Score=34.14 Aligned_cols=27 Identities=7% Similarity=-0.137 Sum_probs=19.1
Q ss_pred hhcCeeEEEEceeccccchHHHHHHHhcCCC
Q 045079 413 EKATRLHIIDFGICYGFQWPCLIQILSSRPT 443 (596)
Q Consensus 413 ~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~g 443 (596)
.|++.|||||+ +.+ ++ .+|+.+.+..+
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~~~ 76 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHAYP 76 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHhCC
Confidence 48999999999 444 66 55666665443
No 86
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=29.40 E-value=1.4e+02 Score=29.19 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=45.6
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHcC
Q 045079 311 LRGLLTLCA-QAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLG 365 (596)
Q Consensus 311 L~~LLl~CA-qAVa~~d~~~A~~lL~~I~q~sSp~GD~~QRLA~yFaeAL~aRL~g 365 (596)
+.++|+.|. ..+..++...|..+|..|.++..|..+.-.|+...|.+||-.=+.|
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g 182 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEG 182 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcC
Confidence 445666665 6678889999999999999999888888899999999999765555
No 87
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=29.31 E-value=4.3e+02 Score=26.04 Aligned_cols=103 Identities=19% Similarity=0.333 Sum_probs=53.0
Q ss_pred hcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccc
Q 045079 414 KATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKW 493 (596)
Q Consensus 414 g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~ 493 (596)
.....+|+|+|.+.|. +...|+.+ + .++|+|+.. ...++.+.+++. ..+...+|... .+
T Consensus 46 ~~~~~~vLdiG~G~G~----~~~~l~~~-~----~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~--~~ 104 (233)
T PRK05134 46 GLFGKRVLDVGCGGGI----LSESMARL-G----ADVTGIDAS------EENIEVARLHAL----ESGLKIDYRQT--TA 104 (233)
T ss_pred CCCCCeEEEeCCCCCH----HHHHHHHc-C----CeEEEEcCC------HHHHHHHHHHHH----HcCCceEEEec--CH
Confidence 3456789999998875 23344443 2 469999873 234554444432 23444455432 23
Q ss_pred cccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEee
Q 045079 494 ETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHG 549 (596)
Q Consensus 494 E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~ 549 (596)
+.+... ..+-+=+|-|.+-++|+.+ + ..+|+.+ +-|+|.-.++.
T Consensus 105 ~~~~~~----~~~~fD~Ii~~~~l~~~~~-------~-~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 105 EELAAE----HPGQFDVVTCMEMLEHVPD-------P-ASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred HHhhhh----cCCCccEEEEhhHhhccCC-------H-HHHHHHHHHHcCCCcEEEE
Confidence 322110 1122223344455666653 2 3566655 55688865443
No 88
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=29.26 E-value=2.5e+02 Score=31.41 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCCCCC--eEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccC
Q 045079 432 PCLIQILSSRPTGPP--MLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIR 497 (596)
Q Consensus 432 p~Liq~LA~R~gGPP--~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~ 497 (596)
|.||+.|+.+...-+ +|.+--|+. .++++.++....++++..|.++++..-...-+.++
T Consensus 14 p~li~~l~~~~~~l~~~ei~L~Did~-------~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~ 74 (419)
T cd05296 14 PELIEGLIRRYEELPVTELVLVDIDE-------EEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALE 74 (419)
T ss_pred HHHHHHHHhccccCCCCEEEEecCCh-------HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhC
Confidence 689999998754333 566666651 37888899999999999999998877554334443
No 89
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=29.08 E-value=4.4e+02 Score=23.89 Aligned_cols=102 Identities=16% Similarity=0.160 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhcCCcEE--EEeecccccccCcccc-----cccCCC--eEEEEeeccccCCCCCCcCCCCcHHHHHH
Q 045079 466 VEETGNRLKSYCERFNVPFE--YNVIAQKWETIRLEDF-----KIDRDE--VTVVNCVHRMKNLPDDTVVDSSPRDAVLD 536 (596)
Q Consensus 466 leetG~rL~~~A~~~gVPFe--F~~Ia~~~E~i~~edL-----~i~~dE--~LaVN~~f~Lh~L~Desv~~~spRd~vL~ 536 (596)
++.--+.|.+||+..|.++. |.-...+.....-..| .+..|+ +|+|-.+-||-+-..+ .-.++.
T Consensus 17 ~~~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~-------~~~~~~ 89 (148)
T smart00857 17 LERQLEALRAYAKANGWEVVRIYEDEGVSGKKADRPGLQRLLADLRAGDIDVLVVYKLDRLGRSLRD-------LLALLE 89 (148)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHcCCCCEEEEeccchhhCcHHH-------HHHHHH
Confidence 44445678999999998753 3222111111111222 256677 8888877776553322 235777
Q ss_pred HHHhhCCcEEEeeeecCCCCcchhHHHHHHHHHHHHHHhh
Q 045079 537 LIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFD 576 (596)
Q Consensus 537 ~Ir~L~P~Vfv~~e~n~~~nsp~F~~RF~EAL~~YSAlFD 576 (596)
.++..+=.|++.. ++-.+......++...+..+.+-++
T Consensus 90 ~l~~~gi~l~~~~--~~~~~~~~~~~~~~~~i~~~~a~~e 127 (148)
T smart00857 90 LLEKKGVRLVSVT--EGIEDTSTPAGRLMLDILAALAEFE 127 (148)
T ss_pred HHHHCCCEEEECc--CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 8888775555443 3322322334555555554444443
No 90
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=28.13 E-value=3.9e+02 Score=27.18 Aligned_cols=41 Identities=24% Similarity=0.316 Sum_probs=27.5
Q ss_pred HHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 407 TIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 407 aIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
.|++++...+.-.|+|+|.|.|. |...|+.+. + ++++|+..
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~----lt~~L~~~~--~---~v~~iE~d 60 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGA----LTEPLLKRA--K---KVTAIEID 60 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCH----HHHHHHHhC--C---cEEEEECC
Confidence 44444444455689999999986 556666553 2 39999863
No 91
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=27.72 E-value=6.1e+02 Score=26.45 Aligned_cols=67 Identities=18% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHhHHHHHhhhh--cCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhh
Q 045079 402 LFANQTIRKLAEK--ATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCER 479 (596)
Q Consensus 402 ~~ANqaIleA~~g--~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~ 479 (596)
..+.+..+++++. ...-.|+|+|.+.|. |...++.. | + -+++|||.. ...++.+.+++ +.
T Consensus 143 h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~-g-~--~~V~avDid------~~al~~a~~n~----~~ 204 (288)
T TIGR00406 143 HPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL-G-A--AKVVGIDID------PLAVESARKNA----EL 204 (288)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc-C-C--CeEEEEECC------HHHHHHHHHHH----HH
Confidence 3445555665542 234689999999984 33444443 2 2 389999973 34465554443 34
Q ss_pred cCCcEEE
Q 045079 480 FNVPFEY 486 (596)
Q Consensus 480 ~gVPFeF 486 (596)
.++...+
T Consensus 205 n~~~~~~ 211 (288)
T TIGR00406 205 NQVSDRL 211 (288)
T ss_pred cCCCcce
Confidence 4555433
No 92
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=27.52 E-value=2.5e+02 Score=25.12 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=26.7
Q ss_pred CCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeeee
Q 045079 505 RDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGIS 551 (596)
Q Consensus 505 ~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e~ 551 (596)
.+.+-+..-.|..| |...++...++.++|+-+|=.+.
T Consensus 71 ~~~~~~~~VPYSeH----------SSf~EL~~Fv~~l~P~~IiPtV~ 107 (110)
T PF07522_consen 71 RGNVRIYRVPYSEH----------SSFSELKEFVSFLKPKKIIPTVN 107 (110)
T ss_pred CCCceEEEEecccC----------CCHHHHHHHHHhcCCcEEEcccc
Confidence 34555566566555 56778999999999998875544
No 93
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=27.44 E-value=4e+02 Score=30.01 Aligned_cols=123 Identities=21% Similarity=0.271 Sum_probs=71.9
Q ss_pred hcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeeccc
Q 045079 414 KATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQK 492 (596)
Q Consensus 414 g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~ 492 (596)
....=+++|+=.+.| .+=..||. ..-+++||+.- .+.++.+ + +=|+..|+- .+|.+- +
T Consensus 291 ~~~~~~vlDlYCGvG----~f~l~lA~-----~~~~V~gvEi~------~~aV~~A-~---~NA~~n~i~N~~f~~~--~ 349 (432)
T COG2265 291 LAGGERVLDLYCGVG----TFGLPLAK-----RVKKVHGVEIS------PEAVEAA-Q---ENAAANGIDNVEFIAG--D 349 (432)
T ss_pred hcCCCEEEEeccCCC----hhhhhhcc-----cCCEEEEEecC------HHHHHHH-H---HHHHHcCCCcEEEEeC--C
Confidence 334457899877776 23344653 34799999873 2334332 2 334444544 555432 2
Q ss_pred ccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcH----HHHHHHHHhhCCcEEEeeeecCCCCcchhHHHHHHHH
Q 045079 493 WETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPR----DAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREAL 568 (596)
Q Consensus 493 ~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spR----d~vL~~Ir~L~P~Vfv~~e~n~~~nsp~F~~RF~EAL 568 (596)
.|.+......-..-++|+|+ -|| ..+|+.|.+++|+-+|-+ ++|...| .|....|
T Consensus 350 ae~~~~~~~~~~~~d~VvvD----------------PPR~G~~~~~lk~l~~~~p~~IvYV----SCNP~Tl-aRDl~~L 408 (432)
T COG2265 350 AEEFTPAWWEGYKPDVVVVD----------------PPRAGADREVLKQLAKLKPKRIVYV----SCNPATL-ARDLAIL 408 (432)
T ss_pred HHHHhhhccccCCCCEEEEC----------------CCCCCCCHHHHHHHHhcCCCcEEEE----eCCHHHH-HHHHHHH
Confidence 33333222211122466653 344 489999999999966554 6677664 6777777
Q ss_pred HHH------HHHhhhh
Q 045079 569 FHF------SAMFDIF 578 (596)
Q Consensus 569 ~~Y------SAlFDsL 578 (596)
..+ -++|||+
T Consensus 409 ~~~gy~i~~v~~~DmF 424 (432)
T COG2265 409 ASTGYEIERVQPFDMF 424 (432)
T ss_pred HhCCeEEEEEEEeccC
Confidence 664 5788876
No 94
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=27.25 E-value=5.6e+02 Score=24.49 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=22.3
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
..-.|+|+|.+.|. +-..++.+ + |..+||+||..
T Consensus 31 ~~~~vLDiG~G~G~----~~~~la~~--~-~~~~v~~vD~s 64 (187)
T PRK08287 31 RAKHLIDVGAGTGS----VSIEAALQ--F-PSLQVTAIERN 64 (187)
T ss_pred CCCEEEEECCcCCH----HHHHHHHH--C-CCCEEEEEECC
Confidence 34479999999883 22233433 2 45899999973
No 95
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=27.23 E-value=2.6e+02 Score=28.63 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=28.2
Q ss_pred HhHHHHHhhh----hcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 404 ANQTIRKLAE----KATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 404 ANqaIleA~~----g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
.++.|++.+. -.+.=+|+|+|.|.|. |...|+.+. .++|||+..
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~----lt~~L~~~~-----~~v~~vEid 60 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGA----LTDELAKRA-----KKVYAIELD 60 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCH----HHHHHHHhC-----CEEEEEECC
Confidence 4444444443 2344579999999985 555566552 279999974
No 96
>PRK03646 dadX alanine racemase; Reviewed
Probab=27.00 E-value=1.2e+02 Score=32.99 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=26.2
Q ss_pred CeeEE-EEceec-cccc---hHHHHHHHhcCCCCCCeEEEEeecC
Q 045079 416 TRLHI-IDFGIC-YGFQ---WPCLIQILSSRPTGPPMLRITGIEL 455 (596)
Q Consensus 416 ~~vHI-IDfgI~-~G~Q---Wp~Liq~LA~R~gGPP~LRITgI~~ 455 (596)
-+||| ||-|++ .|+. |+.+++.+.. -|.|+|+||-.
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~s 157 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMS 157 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 46899 999986 5885 5666666643 34699999964
No 97
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=26.91 E-value=5.4e+02 Score=29.08 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHhhccC----CCC-ChhhHHHHHHHHHHHHHHc
Q 045079 326 DQRTANEQLKQIRRHSS----AFG-DGTQRLAHYFADALEARLL 364 (596)
Q Consensus 326 d~~~A~~lL~~I~q~sS----p~G-D~~QRLA~yFaeAL~aRL~ 364 (596)
+...|.+++.+|+..+. +.+ ++.|.+.....+.|...+.
T Consensus 40 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~l~ 83 (437)
T PRK00771 40 NVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKLLG 83 (437)
T ss_pred CHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHhC
Confidence 45666666666654421 222 3345555566666655443
No 98
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=26.60 E-value=1.1e+02 Score=28.13 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHHHHcCCCCCC---c-------ccCCCCCChHH
Q 045079 313 GLLTLCAQAVASNDQRTANEQLKQIRRHSSAFGDGTQRLAHYFADALEARLLGAHTPM---H-------THISCRTSAAD 382 (596)
Q Consensus 313 ~LLl~CAqAVa~~d~~~A~~lL~~I~q~sSp~GD~~QRLA~yFaeAL~aRL~gtg~~~---y-------~~ls~~~s~~d 382 (596)
..+...++||..||...|-.++.+|.+.--....-..-|..||.+-|..+..+..... . ..+++..+...
T Consensus 16 ~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 95 (143)
T PF12169_consen 16 EQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEEEEKLKELAKKFSPER 95 (143)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTTHHHHHHHHHHS-HHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHHHHHHHHHHHcCCHHH
Confidence 4677889999999998888888888765432233467888999999999987731111 0 01123456666
Q ss_pred HHHHHHHHhhccc
Q 045079 383 ILKAYQMSLSAWP 395 (596)
Q Consensus 383 ~lkAy~lf~~~~P 395 (596)
+..+|+.+.+.-.
T Consensus 96 l~~~~~~l~~~~~ 108 (143)
T PF12169_consen 96 LQRILQILLEAEN 108 (143)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6667766655433
No 99
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=26.14 E-value=2.6e+02 Score=27.15 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHhhcccchhhhH----HHHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCC--CCCCeE--EE
Q 045079 379 SAADILKAYQMSLSAWPFIRMSY----LFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRP--TGPPML--RI 450 (596)
Q Consensus 379 s~~d~lkAy~lf~~~~Pf~kfa~----~~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~--gGPP~L--RI 450 (596)
+..++..++.-.++.+||..-+. |.+-.++++++. .+..++.|...++.|..-| |+++.. .+
T Consensus 5 ~~~~f~~~l~~~~e~~~W~~~~~~~RPf~s~~~L~~a~~----------~~~~~~~~~~~~~~l~~HP~lg~~~~~~~~~ 74 (158)
T TIGR03180 5 PADEASATLMECCAIPAWARTLVAARPFASAEALLAAAD----------QAWQNLSEQDLFEALAGHPRIGEKPAGQAAY 74 (158)
T ss_pred CHHHHHHHHHHhccChHHHHHHHHcCCCCCHHHHHHHHH----------HHHHcCCHHHHHHHHHhCCcccCccccccch
Confidence 45566666667777777774222 233445555553 2345677888888887655 333321 11
Q ss_pred Eee-cCCCCCCC--ChHHHHHHHHHHHHHHhhcCCcEEEEe
Q 045079 451 TGI-ELPQPGFR--PAERVEETGNRLKSYCERFNVPFEYNV 488 (596)
Q Consensus 451 TgI-~~pq~gfr--p~~~leetG~rL~~~A~~~gVPFeF~~ 488 (596)
|.- .-=|.|.. +.+..++..+--..|-++||.||-..+
T Consensus 75 ~~~S~~EQagl~~~~~~~~~~L~~lN~~Y~~kFGfpFii~v 115 (158)
T TIGR03180 75 AATSRREQAGVDGADEETRAALLEGNAAYEEKFGRIFLIRA 115 (158)
T ss_pred hhhhHHHHhcccCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 111 00012221 234566666677789999999996643
No 100
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=26.05 E-value=7.5e+02 Score=26.93 Aligned_cols=97 Identities=14% Similarity=0.203 Sum_probs=53.2
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeecccccccC
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQKWETIR 497 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~~E~i~ 497 (596)
+|+|++.|.| .+--.||.+ + -+++||+.. ...++.+.+. |+..|+. .+|. ..+.++..
T Consensus 236 ~vLDL~cG~G----~~~l~la~~-~----~~v~~vE~~------~~av~~a~~N----~~~~~~~~~~~~--~~d~~~~~ 294 (374)
T TIGR02085 236 QMWDLFCGVG----GFGLHCAGP-D----TQLTGIEIE------SEAIACAQQS----AQMLGLDNLSFA--ALDSAKFA 294 (374)
T ss_pred EEEEccCCcc----HHHHHHhhc-C----CeEEEEECC------HHHHHHHHHH----HHHcCCCcEEEE--ECCHHHHH
Confidence 7899999888 232334432 2 379999973 2345544433 3344553 4443 33333221
Q ss_pred cccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeee
Q 045079 498 LEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGI 550 (596)
Q Consensus 498 ~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e 550 (596)
.. +. ..-++|++|=.++ ..-..++..|.+++|+-+|.++
T Consensus 295 ~~-~~-~~~D~vi~DPPr~------------G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 295 TA-QM-SAPELVLVNPPRR------------GIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred Hh-cC-CCCCEEEECCCCC------------CCcHHHHHHHHhcCCCeEEEEE
Confidence 11 11 1235777773321 1124788999999998877763
No 101
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=26.03 E-value=2.5e+02 Score=28.04 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred ccchHHHHHHHhcCCCCCC--eEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCcccccccC
Q 045079 428 GFQWPCLIQILSSRPTGPP--MLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDR 505 (596)
Q Consensus 428 G~QWp~Liq~LA~R~gGPP--~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~edL~i~~ 505 (596)
+..||-++..+..+...-+ +|++-.|+ .++++.+++-..++++..|.++++..-...-|.|.-.|+
T Consensus 9 S~~~~~~l~~~l~~~~~l~~~ei~L~Did--------~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADf---- 76 (183)
T PF02056_consen 9 STYFPLLLLGDLLRTEELSGSEIVLMDID--------EERLEIVERLARRMVEEAGADLKVEATTDRREALEGADF---- 76 (183)
T ss_dssp SCCHHHHHHHHHHCTTTSTEEEEEEE-SC--------HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESE----
T ss_pred hHhhHHHHHHHHhcCccCCCcEEEEEcCC--------HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCE----
Confidence 3689988776666655544 45555554 489999999999999999999999876544444543333
Q ss_pred CCeEEEEee-------------ccccC--CC--CCCcCCC---------CcHHHHHHHHHhhCCcEEEeeeecCCCCcch
Q 045079 506 DEVTVVNCV-------------HRMKN--LP--DDTVVDS---------SPRDAVLDLIKRINPDVFIHGISNGTYNAPF 559 (596)
Q Consensus 506 dE~LaVN~~-------------f~Lh~--L~--Desv~~~---------spRd~vL~~Ir~L~P~Vfv~~e~n~~~nsp~ 559 (596)
|||+. .-++| +. .|++.+- ...-.+.+.|+++.|+-.++ +|..|
T Consensus 77 ----Vi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~i-----NytNP- 146 (183)
T PF02056_consen 77 ----VINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLI-----NYTNP- 146 (183)
T ss_dssp ----EEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEE-----E-SSS-
T ss_pred ----EEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEE-----eccCh-
Confidence 34432 11111 12 3443110 01356788899999999887 56666
Q ss_pred hHHHHHHHHHH
Q 045079 560 FLARFREALFH 570 (596)
Q Consensus 560 F~~RF~EAL~~ 570 (596)
+....+|+..
T Consensus 147 -~~~vt~a~~r 156 (183)
T PF02056_consen 147 -MGIVTEALSR 156 (183)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 3456666663
No 102
>TIGR00492 alr alanine racemase. This enzyme interconverts L-alanine and D-alanine. Its primary function is to generate D-alanine for cell wall formation. With D-alanine-D-alanine ligase, it makes up the D-alanine branch of the peptidoglycan biosynthetic route. It is a monomer with one pyridoxal phosphate per subunit. In E. coli, the ortholog is duplicated so that a second isozyme, DadX, is present. DadX, a paralog of the biosynthetic Alr, is induced by D- or L-alanine and is involved in catabolism.
Probab=25.29 E-value=2.8e+02 Score=29.84 Aligned_cols=72 Identities=22% Similarity=0.307 Sum_probs=38.5
Q ss_pred CeeEE-EEceec-cccc---hHHHHHHHhcCCCCCCeEE-EEeecCCCCCCC-Ch-HHHHHHHHHHHHHHhh---cCCcE
Q 045079 416 TRLHI-IDFGIC-YGFQ---WPCLIQILSSRPTGPPMLR-ITGIELPQPGFR-PA-ERVEETGNRLKSYCER---FNVPF 484 (596)
Q Consensus 416 ~~vHI-IDfgI~-~G~Q---Wp~Liq~LA~R~gGPP~LR-ITgI~~pq~gfr-p~-~~leetG~rL~~~A~~---~gVPF 484 (596)
-+||| ||-|++ +|+. |..+++.+... |.|+ |.||-.--+... +. +..++.-+++.++++. .|+++
T Consensus 120 ~~V~l~VdtGm~R~Gi~~~e~~~~~~~i~~~----~~l~~l~Gi~tH~~~~~~~~~~~~~~q~~~f~~~~~~l~~~g~~~ 195 (367)
T TIGR00492 120 LKVHLKIDTGMNRLGVKPDEAALFVQKLRQL----KKFLELEGIFSHFATADEPKTGTTQKQIERFNSFLEGLKQQNIEP 195 (367)
T ss_pred eEEEEEeeCCCCCCCCChHHHHHHHHHHHhC----CCCCCceEEEcCCCCCCCCCChHHHHHHHHHHHHHHHHhhcCCCC
Confidence 47898 898865 6885 55555555432 4599 999954221111 11 1233333444444433 36666
Q ss_pred EEEeecc
Q 045079 485 EYNVIAQ 491 (596)
Q Consensus 485 eF~~Ia~ 491 (596)
++..++.
T Consensus 196 ~~~~~~n 202 (367)
T TIGR00492 196 PFRHIAN 202 (367)
T ss_pred CcEEccC
Confidence 6555543
No 103
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=25.23 E-value=6.3e+02 Score=24.47 Aligned_cols=101 Identities=22% Similarity=0.350 Sum_probs=50.7
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCC-cEEEEeeccccc
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNV-PFEYNVIAQKWE 494 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gV-PFeF~~Ia~~~E 494 (596)
....|+|+|.+.|. +...++.. + .++|+|+.. ...++.+.+++. ..++ .+.|... .++
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~--~---~~v~~iD~s------~~~~~~a~~~~~----~~~~~~~~~~~~--d~~ 103 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL--G---ANVTGIDAS------EENIEVAKLHAK----KDPLLKIEYRCT--SVE 103 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc--C---CeEEEEeCC------HHHHHHHHHHHH----HcCCCceEEEeC--CHH
Confidence 36789999999884 33334432 2 249999863 234555444433 2344 3444322 222
Q ss_pred ccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEee
Q 045079 495 TIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHG 549 (596)
Q Consensus 495 ~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~ 549 (596)
++.... -.+-.+|+. ...++|..+ | ..+|..+ +.|+|+-+++.
T Consensus 104 ~~~~~~--~~~~D~i~~--~~~l~~~~~-------~-~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 104 DLAEKG--AKSFDVVTC--MEVLEHVPD-------P-QAFIRACAQLLKPGGILFF 147 (224)
T ss_pred HhhcCC--CCCccEEEe--hhHHHhCCC-------H-HHHHHHHHHhcCCCcEEEE
Confidence 221111 011234443 344566543 3 3566655 66789876553
No 104
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.61 E-value=82 Score=35.00 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhcCCcEEEEeec-ccccccCcccccccCCC
Q 045079 469 TGNRLKSYCERFNVPFEYNVIA-QKWETIRLEDFKIDRDE 507 (596)
Q Consensus 469 tG~rL~~~A~~~gVPFeF~~Ia-~~~E~i~~edL~i~~dE 507 (596)
+|.|| +-|+++|+||-..+=. ..|+....|-.-++.||
T Consensus 375 iG~Ri-~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge 413 (457)
T KOG2324|consen 375 IGKRI-KDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGE 413 (457)
T ss_pred hHHhh-hhHHhcCCCEEEEEcccccCCCceEEEEEeecCc
Confidence 34554 4589999999665432 45665555444444444
No 105
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=23.80 E-value=5.9e+02 Score=25.58 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=22.2
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
..-.|+|.|.+.|. =...||.+. ..+||||..
T Consensus 34 ~~~rvLd~GCG~G~----da~~LA~~G-----~~V~gvD~S 65 (213)
T TIGR03840 34 AGARVFVPLCGKSL----DLAWLAEQG-----HRVLGVELS 65 (213)
T ss_pred CCCeEEEeCCCchh----HHHHHHhCC-----CeEEEEeCC
Confidence 34589999999882 233456542 689999973
No 106
>PRK07004 replicative DNA helicase; Provisional
Probab=23.63 E-value=1.7e+02 Score=32.97 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=38.0
Q ss_pred CeeEEEEceeccccchHHHHHHHhcCCCCCCeE---EEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045079 416 TRLHIIDFGICYGFQWPCLIQILSSRPTGPPML---RITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 416 ~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~L---RITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFe 485 (596)
..++|.|.+-.-=.+...-++.|..+.|++.-| .|+-|..+.++-...+.+.++.+.|..+|++++||+=
T Consensus 296 ~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi 368 (460)
T PRK07004 296 AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVI 368 (460)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 357776665222223334444555544433221 1122221221112345688999999999999999964
No 107
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=23.37 E-value=3.4e+02 Score=26.28 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhhcccch-hhhH----HHHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCC--CCCCeE--EE
Q 045079 380 AADILKAYQMSLSAWPFI-RMSY----LFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRP--TGPPML--RI 450 (596)
Q Consensus 380 ~~d~lkAy~lf~~~~Pf~-kfa~----~~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~--gGPP~L--RI 450 (596)
..++..++-.+++.|||+ ..+. |.+-.++..++.. +..++.|...++.|..-| |+++.. .+
T Consensus 3 ~~~fv~~l~~l~E~spw~a~~~~~~rPf~s~~~L~~a~~~----------~~~~~~~~~~~~ll~~HP~Lg~~~~~~~~l 72 (157)
T TIGR03164 3 KADFVAALGDIFEHSPWIAERAWAQRPFDSIEDLHAAMVG----------AVRAASPEQQLALIRAHPDLAGKLAVAGEL 72 (157)
T ss_pred HHHHHHHHhhHhcCCHHHHHHHHhcCCCCCHHHHHHHHHH----------HHHHCCHHHHHHHHHhCCcccccccccccc
Confidence 456777777888888883 2222 3444455555532 234577777777777655 343321 22
Q ss_pred EeecC-CC--CCC--CChHHHHHHHHHHHHHHhhcCCcEEEEe
Q 045079 451 TGIEL-PQ--PGF--RPAERVEETGNRLKSYCERFNVPFEYNV 488 (596)
Q Consensus 451 TgI~~-pq--~gf--rp~~~leetG~rL~~~A~~~gVPFeF~~ 488 (596)
|.-.- -| -|. -+.+..++..+--..|-++||.||-..+
T Consensus 73 s~~S~~EQ~~agl~~~~~~~~~~L~~lN~~Y~~kFGfpFvi~v 115 (157)
T TIGR03164 73 TAESTSEQASAGLDQLSQEEFARFTRLNNAYRARFGFPFIMAV 115 (157)
T ss_pred hHhhHHHHHhccccCCCHHHHHHHHHHHHHHHHHCCCeeEEee
Confidence 22100 01 111 1224456666666789999999996543
No 108
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=23.26 E-value=8.8e+02 Score=26.69 Aligned_cols=112 Identities=23% Similarity=0.245 Sum_probs=57.7
Q ss_pred eEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCc-EEEEeeccccccc
Q 045079 418 LHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVP-FEYNVIAQKWETI 496 (596)
Q Consensus 418 vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVP-FeF~~Ia~~~E~i 496 (596)
-+|+|+|.+.|.= --.||.+. -+++||+.. ...++.+.+++ +..|+. .+| +..+++++
T Consensus 294 ~~vLDl~cG~G~~----sl~la~~~-----~~V~~vE~~------~~av~~a~~n~----~~~~~~nv~~--~~~d~~~~ 352 (431)
T TIGR00479 294 ELVVDAYCGVGTF----TLPLAKQA-----KSVVGIEVV------PESVEKAQQNA----ELNGIANVEF--LAGTLETV 352 (431)
T ss_pred CEEEEcCCCcCHH----HHHHHHhC-----CEEEEEEcC------HHHHHHHHHHH----HHhCCCceEE--EeCCHHHH
Confidence 4799999998832 22255432 278999973 34465555443 333443 333 33333322
Q ss_pred Ccccccc--cCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeeeecCCCCcchhHHHHHHHH
Q 045079 497 RLEDFKI--DRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREAL 568 (596)
Q Consensus 497 ~~edL~i--~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e~n~~~nsp~F~~RF~EAL 568 (596)
- ..+.. ..-++|+++-... .--..||+.|++++|+-+|.+ ++| |.-+.|=.+.|
T Consensus 353 l-~~~~~~~~~~D~vi~dPPr~------------G~~~~~l~~l~~l~~~~ivyv----sc~-p~tlard~~~l 408 (431)
T TIGR00479 353 L-PKQPWAGQIPDVLLLDPPRK------------GCAAEVLRTIIELKPERIVYV----SCN-PATLARDLEFL 408 (431)
T ss_pred H-HHHHhcCCCCCEEEECcCCC------------CCCHHHHHHHHhcCCCEEEEE----cCC-HHHHHHHHHHH
Confidence 1 11111 1114555542210 112578999999999877655 344 33344544444
No 109
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=23.20 E-value=1.8e+02 Score=22.05 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=23.3
Q ss_pred CeEEEEee-ccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEee
Q 045079 507 EVTVVNCV-HRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHG 549 (596)
Q Consensus 507 E~LaVN~~-f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~ 549 (596)
|.+-|||. ..++ +.. ..-++.++.+|+.++|+-++++
T Consensus 1 e~i~v~a~v~~~~-fSg-----Had~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 1 EMIPVRARVEQID-FSG-----HADREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp CEEE--SEEEESG-CSS-----S-BHHHHHHHHHHHCSSEEEEE
T ss_pred CEEEeEEEEEEEe-ecC-----CCCHHHHHHHHHhcCCCEEEEe
Confidence 45667764 3343 332 2457899999999999987754
No 110
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=22.87 E-value=6.2e+02 Score=28.52 Aligned_cols=144 Identities=22% Similarity=0.247 Sum_probs=74.6
Q ss_pred hHHHHhHHHHHhhhhcCeeEEEEceeccc-cchHHHHHHHh--------cCCCCCCeEEEEeecCCCCCCCChHHHHHHH
Q 045079 400 SYLFANQTIRKLAEKATRLHIIDFGICYG-FQWPCLIQILS--------SRPTGPPMLRITGIELPQPGFRPAERVEETG 470 (596)
Q Consensus 400 a~~~ANqaIleA~~g~~~vHIIDfgI~~G-~QWp~Liq~LA--------~R~gGPP~LRITgI~~pq~gfrp~~~leetG 470 (596)
+.+++|..+ +.-.+|-|||.++++- .-=|.+|- |+ -+...|++...-|.-.||. .|...+.- -
T Consensus 90 t~~LaN~~l----~rG~~v~iiDaDvGQ~ei~pPg~IS-L~~~~s~~~~L~~l~~~~~~FvG~isP~~--~~~~~i~~-v 161 (398)
T COG1341 90 TTYLANKLL----ARGRKVAIIDADVGQSEIGPPGFIS-LAFPESPVISLSELEPFTLYFVGSISPQG--FPGRYIAG-V 161 (398)
T ss_pred HHHHHHHHh----hcCceEEEEeCCCCCcccCCCceEE-eecccCCCCCHHHcCccceEEEeccCCCC--ChHHHHHH-H
Confidence 334566543 3345699999998742 11121111 00 1223566777777766764 23344433 3
Q ss_pred HHHHHHHhhcCCcEEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEeee
Q 045079 471 NRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGI 550 (596)
Q Consensus 471 ~rL~~~A~~~gVPFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~e 550 (596)
.||.++|++. -++++||+ |..+.-...++--...|+..+|+.+|..+
T Consensus 162 ~rL~~~a~~~-------------------------~~~ilIdT--------~GWi~G~~g~elk~~li~~ikP~~Ii~l~ 208 (398)
T COG1341 162 ARLVDLAKKE-------------------------ADFILIDT--------DGWIKGWGGLELKRALIDAIKPDLIIALE 208 (398)
T ss_pred HHHHHHhhcc-------------------------CCEEEEcC--------CCceeCchHHHHHHHHHhhcCCCEEEEec
Confidence 6777777653 23556764 22222223456666678888888888766
Q ss_pred ecCCCCcchhHHHHHHHHHHHHHHhhhhhcCCCCCCHHHHh
Q 045079 551 SNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERML 591 (596)
Q Consensus 551 ~n~~~nsp~F~~RF~EAL~~YSAlFDsLdat~pr~~~eR~~ 591 (596)
.+... .++-+=.+...| ....|+..||.-.||..
T Consensus 209 ~~~~~---~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~ 242 (398)
T COG1341 209 RANEL---SPLLEGVESIVY----LKVPDAVAPRSREERKE 242 (398)
T ss_pred ccccc---chhhhcccCceE----EeccccccccChhHHHH
Confidence 54332 222333333333 23334455666555544
No 111
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.54 E-value=3.8e+02 Score=28.54 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=64.2
Q ss_pred hHHHHH-HHHHHhhcccchhhhHHHHhHHHHHhhhhcCeeEEEEcee---cc-cc-chHHHHHHHhcCCCCCCeEEE---
Q 045079 380 AADILK-AYQMSLSAWPFIRMSYLFANQTIRKLAEKATRLHIIDFGI---CY-GF-QWPCLIQILSSRPTGPPMLRI--- 450 (596)
Q Consensus 380 ~~d~lk-Ay~lf~~~~Pf~kfa~~~ANqaIleA~~g~~~vHIIDfgI---~~-G~-QWp~Liq~LA~R~gGPP~LRI--- 450 (596)
..++|+ |++-=| +.|-+.+..+-.-++|++|++..+.-=||-+.- .| |. .|..++..+|++...|--|.+
T Consensus 6 ~k~il~~A~~~~y-aV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLDHg 84 (284)
T PRK09195 6 TKQMLNNAQRGGY-AVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLDHH 84 (284)
T ss_pred HHHHHHHHHHcCc-eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 345543 444333 346667777777888888888877777777653 33 33 477788888887765533332
Q ss_pred --------------EeecCCCCCCCChH-HHHHHHHHHHHHHhhcCCcEEE
Q 045079 451 --------------TGIELPQPGFRPAE-RVEETGNRLKSYCERFNVPFEY 486 (596)
Q Consensus 451 --------------TgI~~pq~gfrp~~-~leetG~rL~~~A~~~gVPFeF 486 (596)
|.|=...+. -|-+ .++.| +++.++|+.+||+.|=
T Consensus 85 ~~~e~i~~Ai~~GftSVM~DgS~-l~~eeNi~~T-~~vv~~Ah~~gv~VEa 133 (284)
T PRK09195 85 EKFDDIAQKVRSGVRSVMIDGSH-LPFAQNISLV-KEVVDFCHRFDVSVEA 133 (284)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCC-CCHHHHHHHH-HHHHHHHHHcCCEEEE
Confidence 222111111 2333 45544 8899999999987763
No 112
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=22.52 E-value=2.8e+02 Score=32.83 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=54.4
Q ss_pred ceeccc-cchHHHHHHHhcC---CCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045079 423 FGICYG-FQWPCLIQILSSR---PTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRL 498 (596)
Q Consensus 423 fgI~~G-~QWp~Liq~LA~R---~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~ 498 (596)
+|+..| -||-+|.++|..+ .++.|.+-|+..+.. .+.. |-+-|.++|+.-|++-+|.. .+++|..
T Consensus 353 ~g~~~~~dq~n~L~e~Lv~aw~~~~~~~~vhf~~~~d~------eED~--T~~YL~d~a~qAG~~t~~~~---~iedL~~ 421 (619)
T PRK10507 353 GYKGNGHNPAEGLINELAGAWKHSRARPFVHIMQDKDI------EENY--HAQFMQQALHQAGFETKILR---GLDELRW 421 (619)
T ss_pred cCCCCcccHHHHHHHHHHHHHHhcCCCCcEEEEECCCC------CcHH--HHHHHHHHHHHCCCceEEec---CHHHeEE
Confidence 344444 5888887777642 344478889977542 1222 66779999999999988862 1334444
Q ss_pred c-cccccCCCeEEEEeeccccC
Q 045079 499 E-DFKIDRDEVTVVNCVHRMKN 519 (596)
Q Consensus 499 e-dL~i~~dE~LaVN~~f~Lh~ 519 (596)
. +=.+-..+-..|.++|+|..
T Consensus 422 d~~G~~~D~dg~~I~~vfKlyP 443 (619)
T PRK10507 422 DAAGQLIDGDGRLVNCVWKTWA 443 (619)
T ss_pred CCCCcEECCCCCEeeeeeeccc
Confidence 3 21233445677899998764
No 113
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=22.35 E-value=90 Score=32.94 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=20.5
Q ss_pred hhcCeeEEEEceeccccchHHHHHHHhc
Q 045079 413 EKATRLHIIDFGICYGFQWPCLIQILSS 440 (596)
Q Consensus 413 ~g~~~vHIIDfgI~~G~QWp~Liq~LA~ 440 (596)
.|.+.|||||++-+.+-+ -.+|+.+++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 489999999998766666 445666765
No 114
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=22.33 E-value=3.9e+02 Score=20.94 Aligned_cols=30 Identities=33% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
+|+|+|.+.|. +...++. .+..++++++..
T Consensus 1 ~ildig~G~G~----~~~~~~~----~~~~~~~~~d~~ 30 (107)
T cd02440 1 RVLDLGCGTGA----LALALAS----GPGARVTGVDIS 30 (107)
T ss_pred CeEEEcCCccH----HHHHHhc----CCCCEEEEEeCC
Confidence 47899998883 4444544 245799999974
No 115
>PLN03075 nicotianamine synthase; Provisional
Probab=22.29 E-value=7.5e+02 Score=26.60 Aligned_cols=107 Identities=9% Similarity=0.109 Sum_probs=54.4
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccccCc
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRL 498 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~i~~ 498 (596)
.|+|.|.+.|-=|..++.+-. .|.-++||||.. .+.++ ..+++.+-...+.=-.+|+... +-++..
T Consensus 126 ~VldIGcGpgpltaiilaa~~-----~p~~~~~giD~d------~~ai~-~Ar~~~~~~~gL~~rV~F~~~D--a~~~~~ 191 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHH-----LPTTSFHNFDID------PSAND-VARRLVSSDPDLSKRMFFHTAD--VMDVTE 191 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhc-----CCCCEEEEEeCC------HHHHH-HHHHHhhhccCccCCcEEEECc--hhhccc
Confidence 489999997755665554322 244599999973 34454 3444332111121123444321 101110
Q ss_pred ccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHH-HhhCCcEEEeeee
Q 045079 499 EDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLI-KRINPDVFIHGIS 551 (596)
Q Consensus 499 edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~I-r~L~P~Vfv~~e~ 551 (596)
. ..+=++|.+. .||++-.+ .+..+|..| +.|+|.-+++.-.
T Consensus 192 -~--l~~FDlVF~~---ALi~~dk~------~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 -S--LKEYDVVFLA---ALVGMDKE------EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -c--cCCcCEEEEe---cccccccc------cHHHHHHHHHHhcCCCcEEEEec
Confidence 1 1112344444 66665433 245677666 5589998877643
No 116
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=22.26 E-value=4.1e+02 Score=28.31 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=64.6
Q ss_pred HHHHH-HHHHHhhcccchhhhHHHHhHHHHHhhhhcCeeEEEEceec---c-cc-chHHHHHHHhcCCCCCCeEEE----
Q 045079 381 ADILK-AYQMSLSAWPFIRMSYLFANQTIRKLAEKATRLHIIDFGIC---Y-GF-QWPCLIQILSSRPTGPPMLRI---- 450 (596)
Q Consensus 381 ~d~lk-Ay~lf~~~~Pf~kfa~~~ANqaIleA~~g~~~vHIIDfgI~---~-G~-QWp~Liq~LA~R~gGPP~LRI---- 450 (596)
.++|+ |++-=| +.|-+.+-.+-.-++|++|++..+.-=||.+.-+ | |+ .|..++..+|++..-|--|.+
T Consensus 5 k~ll~~A~~~~y-AV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~ 83 (282)
T TIGR01858 5 KYMLQDAQAGGY-AVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHE 83 (282)
T ss_pred HHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 34443 333323 4566677777888899999988888778877632 2 43 377788888888766544443
Q ss_pred -------------EeecCCCCCCCChH-HHHHHHHHHHHHHhhcCCcEEE
Q 045079 451 -------------TGIELPQPGFRPAE-RVEETGNRLKSYCERFNVPFEY 486 (596)
Q Consensus 451 -------------TgI~~pq~gfrp~~-~leetG~rL~~~A~~~gVPFeF 486 (596)
|.|=...+. -|-+ .++.| +++.++|+.+||+.|=
T Consensus 84 ~~e~i~~ai~~GFtSVM~DgS~-lp~eeNi~~T-~~vv~~Ah~~gv~VEa 131 (282)
T TIGR01858 84 SLDDIRQKVHAGVRSAMIDGSH-FPFAQNVKLV-KEVVDFCHRQDCSVEA 131 (282)
T ss_pred CHHHHHHHHHcCCCEEeecCCC-CCHHHHHHHH-HHHHHHHHHcCCeEEE
Confidence 222111111 2333 45544 8899999999988764
No 117
>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC. Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.
Probab=21.45 E-value=2.3e+02 Score=32.20 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=49.3
Q ss_pred HHHHHhhhhcCeeEEEEceeccccch--HHHHHHHhcC--CCCCCeEEE----EeecCCCCCCCChHHHHHHHHHHHHHH
Q 045079 406 QTIRKLAEKATRLHIIDFGICYGFQW--PCLIQILSSR--PTGPPMLRI----TGIELPQPGFRPAERVEETGNRLKSYC 477 (596)
Q Consensus 406 qaIleA~~g~~~vHIIDfgI~~G~QW--p~Liq~LA~R--~gGPP~LRI----TgI~~pq~gfrp~~~leetG~rL~~~A 477 (596)
.+|.++.....+-+||=|.-|---.= --..++|... .+..+.+.| ||++.|.. .+.++.+-.++.++|
T Consensus 3 ~~i~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~----~~~v~~~l~~i~~~a 78 (447)
T TIGR03183 3 EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIV----AAWVNASLERMQEAA 78 (447)
T ss_pred HHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHH----HHHHHHHHHHHHHHH
Confidence 34555555555666766664421100 0011233221 122356777 88887753 467888899999999
Q ss_pred hhcCCcEEEEeec
Q 045079 478 ERFNVPFEYNVIA 490 (596)
Q Consensus 478 ~~~gVPFeF~~Ia 490 (596)
++.|+|+..+.+.
T Consensus 79 ~~~~lpi~~~~v~ 91 (447)
T TIGR03183 79 QDQGLPIEPHRLT 91 (447)
T ss_pred HHcCCCeEEEecC
Confidence 9999999998764
No 118
>PRK07402 precorrin-6B methylase; Provisional
Probab=21.40 E-value=2.6e+02 Score=27.01 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=27.1
Q ss_pred HhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecC
Q 045079 404 ANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIEL 455 (596)
Q Consensus 404 ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~ 455 (596)
....|++.+.-...=.|+|+|.+.|. +...+ +.+. |..+||+||.
T Consensus 28 v~~~l~~~l~~~~~~~VLDiG~G~G~-~~~~l---a~~~---~~~~V~~vD~ 72 (196)
T PRK07402 28 VRLLLISQLRLEPDSVLWDIGAGTGT-IPVEA---GLLC---PKGRVIAIER 72 (196)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCH-HHHHH---HHHC---CCCEEEEEeC
Confidence 34445555543344579999999996 23222 3221 2258999997
No 119
>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX. This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=21.29 E-value=8.7e+02 Score=26.55 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=24.3
Q ss_pred eeEE-EEceecc-------cc---chHHHHHHHhcCCCCCCeEEEEee
Q 045079 417 RLHI-IDFGICY-------GF---QWPCLIQILSSRPTGPPMLRITGI 453 (596)
Q Consensus 417 ~vHI-IDfgI~~-------G~---QWp~Liq~LA~R~gGPP~LRITgI 453 (596)
+||| ||=|... || +|+.+++.+... |.|+|.||
T Consensus 147 ~V~LrVdtg~~ri~~g~~~G~~~~e~~~~~~~i~~l----~~l~l~Gi 190 (382)
T cd06811 147 DVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKAL----PGIRIAGL 190 (382)
T ss_pred EEEEEEECCCCccccCccceecHHHHHHHHHHHHcC----CCcEEEeE
Confidence 6888 8877654 77 577777777543 35999999
No 120
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.93 E-value=3.7e+02 Score=28.71 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=50.0
Q ss_pred cccchhhhHHHHhHHHHHhhhhcCeeEEEEceec----cccc-hHHHHHHHhcCCCCCCeEEE-----------------
Q 045079 393 AWPFIRMSYLFANQTIRKLAEKATRLHIIDFGIC----YGFQ-WPCLIQILSSRPTGPPMLRI----------------- 450 (596)
Q Consensus 393 ~~Pf~kfa~~~ANqaIleA~~g~~~vHIIDfgI~----~G~Q-Wp~Liq~LA~R~gGPP~LRI----------------- 450 (596)
+.|-+.+..+-.-++|++|++..+.-=||.+.-+ .|++ +..++..+|.+..-|--|.+
T Consensus 19 aV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~Gf 98 (283)
T PRK07998 19 LAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred EEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCC
Confidence 4444455555566666666666665555555321 2333 23355556655443322221
Q ss_pred EeecCCCCCCCCh-HHHHHHHHHHHHHHhhcCCcEE--EEee
Q 045079 451 TGIELPQPGFRPA-ERVEETGNRLKSYCERFNVPFE--YNVI 489 (596)
Q Consensus 451 TgI~~pq~gfrp~-~~leetG~rL~~~A~~~gVPFe--F~~I 489 (596)
|+|=...+ ..|- +.++.| +++.++|+.+||+.| .-.|
T Consensus 99 tSVM~DgS-~l~~eeNi~~T-~~vve~Ah~~gv~VEaElG~v 138 (283)
T PRK07998 99 TSVMIDGA-ALPFEENIAFT-KEAVDFAKSYGVPVEAELGAI 138 (283)
T ss_pred CEEEEeCC-CCCHHHHHHHH-HHHHHHHHHcCCEEEEEeccC
Confidence 22211111 1244 456554 789999999999884 4444
No 121
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.50 E-value=77 Score=27.87 Aligned_cols=69 Identities=13% Similarity=-0.009 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCcEEEEeecccccccCcccccccCCCeEEEEeeccccCCCCCCcCCCCcHHHHHHHHHhhCCcEEEee
Q 045079 471 NRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHG 549 (596)
Q Consensus 471 ~rL~~~A~~~gVPFeF~~Ia~~~E~i~~edL~i~~dE~LaVN~~f~Lh~L~Desv~~~spRd~vL~~Ir~L~P~Vfv~~ 549 (596)
..|+.+.++.|....+-......+++...-..-++ ++|++.+.+.-+. ..-..+.+.+|+.+|++.|++
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~p-d~V~iS~~~~~~~---------~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERP-DVVGISVSMTPNL---------PEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTC-SEEEEEESSSTHH---------HHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCC-cEEEEEccCcCcH---------HHHHHHHHHHHhcCCCCEEEE
Confidence 35778888888877665433222222211112233 4788887532111 112467888999999976654
No 122
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=20.40 E-value=1.4e+02 Score=29.53 Aligned_cols=59 Identities=25% Similarity=0.405 Sum_probs=40.2
Q ss_pred EEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEEEEeecccccc
Q 045079 419 HIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWET 495 (596)
Q Consensus 419 HIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFeF~~Ia~~~E~ 495 (596)
.|+|+|-|-|| |.+.=+++. |.+++|-|+.-+ -++ .-|...++.+|++ ..+.+..+.|+
T Consensus 51 ~~lDiGSGaGf--PGipLaI~~-----p~~~~~LvEs~~------KK~----~FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGF--PGIPLAIAR-----PDLQVTLVESVG------KKV----AFLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTT--THHHHHHH------TTSEEEEEESSH------HHH----HHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCCC--hhHHHHHhC-----CCCcEEEEeCCc------hHH----HHHHHHHHHhCCC-CEEEEEeeecc
Confidence 69999987665 888888875 679999998632 122 3477778888988 34455566666
No 123
>PHA03411 putative methyltransferase; Provisional
Probab=20.33 E-value=1e+02 Score=32.87 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=40.0
Q ss_pred HHHHhhcccchhhhHHHHhHHHHHhh--hhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 045079 387 YQMSLSAWPFIRMSYLFANQTIRKLA--EKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELP 456 (596)
Q Consensus 387 y~lf~~~~Pf~kfa~~~ANqaIleA~--~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~p 456 (596)
|..|..-+ +...+.||+-+.|+..+ .....-+|+|+|.+.|. +...++.+.+ ..+|||||..
T Consensus 34 ~~~~~g~~-~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGi----lsl~la~r~~---~~~V~gVDis 97 (279)
T PHA03411 34 YNNYHGDG-LGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGR----LSFCMLHRCK---PEKIVCVELN 97 (279)
T ss_pred HHhccccc-ccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCH----HHHHHHHhCC---CCEEEEEECC
Confidence 44455555 66677788888887543 22334579999999983 3334444432 2699999973
No 124
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=20.19 E-value=1.8e+02 Score=29.05 Aligned_cols=87 Identities=11% Similarity=0.097 Sum_probs=54.7
Q ss_pred cCeeEEEEceeccc---cchHHHHHHHhcCCCCCCeEEE------EeecCCCCCCCChHHHHHHHHHHHHHHhhcCCcEE
Q 045079 415 ATRLHIIDFGICYG---FQWPCLIQILSSRPTGPPMLRI------TGIELPQPGFRPAERVEETGNRLKSYCERFNVPFE 485 (596)
Q Consensus 415 ~~~vHIIDfgI~~G---~QWp~Liq~LA~R~gGPP~LRI------TgI~~pq~gfrp~~~leetG~rL~~~A~~~gVPFe 485 (596)
.-+|+||.|=-+.+ -.=-.+|.+|+.+. +.| |||... +....++.-+..|+++.++.|-
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~-----~~~~~y~~t~~IN~d-------d~~~~~~~fVk~fie~~~~~~P 125 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAK-----FPPVKYQTTTIINAD-------DAIVGTGMFVKSSAKKGKKENP 125 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcC-----CCcccccceEEEECc-------cchhhHHHHHHHHHHHhcccCC
Confidence 35899999865432 45557899996542 667 888753 3466788899999999988877
Q ss_pred EEeecccccccCcccccccCC-Ce-EEEEe
Q 045079 486 YNVIAQKWETIRLEDFKIDRD-EV-TVVNC 513 (596)
Q Consensus 486 F~~Ia~~~E~i~~edL~i~~d-E~-LaVN~ 513 (596)
|..+...-+..-...+.+..- ++ .+||-
T Consensus 126 ~~~vllD~~g~v~~~~gv~~~P~T~fVIDk 155 (184)
T TIGR01626 126 WSQVVLDDKGAVKNAWQLNSEDSAIIVLDK 155 (184)
T ss_pred cceEEECCcchHHHhcCCCCCCceEEEECC
Confidence 665542112222234444332 45 46664
No 125
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=20.16 E-value=1.1e+03 Score=25.98 Aligned_cols=67 Identities=9% Similarity=0.157 Sum_probs=43.7
Q ss_pred HHhHHHHHhhhhcCeeEEEEceeccccchHHHHHHHhcCCCCCCeEEEEeecCCCCCCCChHHHHHHHHHHHHHHhhcCC
Q 045079 403 FANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNV 482 (596)
Q Consensus 403 ~ANqaIleA~~g~~~vHIIDfgI~~G~QWp~Liq~LA~R~gGPP~LRITgI~~pq~gfrp~~~leetG~rL~~~A~~~gV 482 (596)
.+-+.+..++.-...-.|+|+|.+.|.-...+.+.+. .-+|+++|.. ..+++.+.++ ++++|+
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~------~~~l~~~~~n----~~r~g~ 287 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-------QAQVVALDIH------EHRLKRVYEN----LKRLGL 287 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCC------HHHHHHHHHH----HHHcCC
Confidence 3455666666544556899999999977776666541 2489999973 3456555444 456787
Q ss_pred cEEE
Q 045079 483 PFEY 486 (596)
Q Consensus 483 PFeF 486 (596)
..++
T Consensus 288 ~~~v 291 (426)
T TIGR00563 288 TIKA 291 (426)
T ss_pred CeEE
Confidence 7444
Done!