Query 045080
Match_columns 203
No_of_seqs 139 out of 314
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 09:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045080.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045080hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1.7E-50 3.6E-55 312.5 7.6 101 43-143 1-101 (101)
2 COG3416 Uncharacterized protei 87.2 1.9 4.2E-05 38.6 6.3 67 83-149 11-77 (233)
3 PF07106 TBPIP: Tat binding pr 83.8 1.3 2.7E-05 36.3 3.4 82 70-151 21-110 (169)
4 PF09849 DUF2076: Uncharacteri 76.9 8 0.00017 34.7 6.3 63 84-146 12-74 (247)
5 PF13334 DUF4094: Domain of un 75.1 2.8 6E-05 32.5 2.6 25 118-142 71-95 (95)
6 PF06698 DUF1192: Protein of u 74.4 8.1 0.00017 27.9 4.7 31 122-152 23-53 (59)
7 PF09006 Surfac_D-trimer: Lung 70.1 10 0.00022 26.4 4.2 26 122-147 1-26 (46)
8 PF10883 DUF2681: Protein of u 68.0 9.3 0.0002 29.5 4.1 33 122-154 32-64 (87)
9 PRK10265 chaperone-modulator p 67.8 11 0.00025 28.8 4.5 33 116-148 67-99 (101)
10 PRK00888 ftsB cell division pr 66.7 9.9 0.00022 29.6 4.1 37 116-152 21-59 (105)
11 PF12325 TMF_TATA_bd: TATA ele 66.7 14 0.00031 29.8 5.0 40 116-155 12-51 (120)
12 PF04977 DivIC: Septum formati 63.5 18 0.00039 25.2 4.6 32 122-153 19-50 (80)
13 PRK10803 tol-pal system protei 63.3 13 0.00028 33.0 4.6 36 120-155 54-89 (263)
14 PF06305 DUF1049: Protein of u 62.5 17 0.00037 25.0 4.3 24 123-146 44-67 (68)
15 PRK10884 SH3 domain-containing 55.9 28 0.00061 30.3 5.3 39 122-160 134-172 (206)
16 COG5509 Uncharacterized small 54.6 34 0.00073 25.4 4.7 26 122-147 27-52 (65)
17 KOG2391 Vacuolar sorting prote 53.6 94 0.002 29.8 8.7 25 120-144 228-252 (365)
18 PF05308 Mito_fiss_reg: Mitoch 53.3 14 0.00031 33.1 3.2 27 127-153 122-151 (253)
19 PF14282 FlxA: FlxA-like prote 52.8 25 0.00053 27.3 4.1 23 119-141 18-40 (106)
20 smart00150 SPEC Spectrin repea 51.9 53 0.0011 22.5 5.3 44 112-155 23-66 (101)
21 cd04766 HTH_HspR Helix-Turn-He 51.0 29 0.00063 25.5 4.1 24 121-144 66-89 (91)
22 PLN02523 galacturonosyltransfe 49.7 32 0.00069 34.6 5.2 54 86-144 145-200 (559)
23 TIGR02209 ftsL_broad cell divi 49.6 27 0.00058 25.0 3.6 31 123-153 27-57 (85)
24 smart00338 BRLZ basic region l 48.9 55 0.0012 22.7 5.0 34 121-154 27-60 (65)
25 PF13591 MerR_2: MerR HTH fami 48.9 22 0.00047 26.3 3.1 23 118-140 61-83 (84)
26 PF12097 DUF3573: Protein of u 48.8 20 0.00044 34.3 3.5 22 121-142 43-64 (383)
27 PF05529 Bap31: B-cell recepto 47.9 24 0.00051 29.3 3.5 35 120-154 154-188 (192)
28 cd01111 HTH_MerD Helix-Turn-He 47.0 55 0.0012 25.2 5.2 29 118-146 78-106 (107)
29 PF05120 GvpG: Gas vesicle pro 45.6 22 0.00047 27.0 2.7 35 113-147 7-41 (79)
30 COG3074 Uncharacterized protei 44.6 44 0.00096 25.5 4.2 37 117-153 15-51 (79)
31 KOG1655 Protein involved in va 44.4 50 0.0011 29.6 5.1 53 75-147 1-53 (218)
32 KOG4552 Vitamin-D-receptor int 44.3 38 0.00082 30.8 4.4 56 74-137 47-105 (272)
33 PF04977 DivIC: Septum formati 43.7 46 0.001 23.1 4.0 28 121-148 25-52 (80)
34 PF11333 DUF3135: Protein of u 43.4 29 0.00062 26.4 3.0 66 67-136 15-82 (83)
35 PRK09039 hypothetical protein; 42.6 46 0.00099 30.8 4.8 26 120-145 137-162 (343)
36 PF14282 FlxA: FlxA-like prote 42.5 33 0.00072 26.6 3.4 24 127-150 51-74 (106)
37 PF12709 Kinetocho_Slk19: Cent 42.1 57 0.0012 25.4 4.5 38 120-157 49-86 (87)
38 PHA02047 phage lambda Rz1-like 40.3 68 0.0015 25.7 4.8 39 117-155 18-62 (101)
39 PF13600 DUF4140: N-terminal d 39.8 52 0.0011 24.5 4.0 32 118-149 68-99 (104)
40 PF00170 bZIP_1: bZIP transcri 39.4 96 0.0021 21.5 5.0 34 121-154 27-60 (64)
41 PF06295 DUF1043: Protein of u 38.8 69 0.0015 25.6 4.8 34 122-155 27-60 (128)
42 PF00435 Spectrin: Spectrin re 38.6 1.3E+02 0.0027 20.5 6.2 56 99-154 12-68 (105)
43 PF07334 IFP_35_N: Interferon- 37.8 50 0.0011 25.1 3.6 26 121-146 1-26 (76)
44 PF14197 Cep57_CLD_2: Centroso 37.6 69 0.0015 23.4 4.2 33 117-149 37-69 (69)
45 smart00338 BRLZ basic region l 37.5 80 0.0017 21.9 4.4 32 118-149 31-62 (65)
46 PRK14127 cell division protein 37.3 71 0.0015 25.5 4.5 30 122-151 39-68 (109)
47 PF06818 Fez1: Fez1; InterPro 37.3 53 0.0011 29.0 4.1 31 119-149 9-39 (202)
48 PF08657 DASH_Spc34: DASH comp 37.2 57 0.0012 29.4 4.5 38 112-149 172-209 (259)
49 PF05308 Mito_fiss_reg: Mitoch 36.9 37 0.0008 30.6 3.2 20 119-138 121-140 (253)
50 TIGR02894 DNA_bind_RsfA transc 36.5 72 0.0016 27.3 4.7 37 122-158 113-149 (161)
51 PF04728 LPP: Lipoprotein leuc 36.3 78 0.0017 22.8 4.2 23 122-144 12-34 (56)
52 PRK10803 tol-pal system protei 36.0 51 0.0011 29.2 3.9 36 119-154 60-95 (263)
53 TIGR03021 pilP_fam type IV pil 35.7 61 0.0013 26.0 4.0 24 119-142 4-27 (119)
54 PF11853 DUF3373: Protein of u 34.2 40 0.00087 33.3 3.2 35 113-148 18-52 (489)
55 TIGR02209 ftsL_broad cell divi 33.5 68 0.0015 22.9 3.6 33 123-155 20-52 (85)
56 PRK13922 rod shape-determining 33.2 97 0.0021 27.0 5.2 49 109-157 55-109 (276)
57 PF06005 DUF904: Protein of un 33.1 66 0.0014 23.8 3.5 22 116-137 14-35 (72)
58 PF00831 Ribosomal_L29: Riboso 33.1 55 0.0012 22.8 2.9 22 130-151 10-31 (58)
59 PF05565 Sipho_Gp157: Siphovir 32.6 76 0.0016 26.2 4.2 74 84-161 13-88 (162)
60 COG5509 Uncharacterized small 32.3 52 0.0011 24.4 2.8 20 121-140 33-52 (65)
61 PF02185 HR1: Hr1 repeat; Int 32.0 1.2E+02 0.0026 21.4 4.7 28 121-148 34-61 (70)
62 PF08286 Spc24: Spc24 subunit 31.7 15 0.00033 28.6 -0.0 33 120-152 13-45 (118)
63 PF04706 Dickkopf_N: Dickkopf 31.4 21 0.00045 25.1 0.6 16 42-57 21-36 (52)
64 PHA02562 46 endonuclease subun 31.3 48 0.001 31.2 3.1 10 94-103 150-159 (562)
65 PRK06798 fliD flagellar cappin 31.0 1.4E+02 0.003 28.6 6.2 20 70-89 344-364 (440)
66 PF04420 CHD5: CHD5-like prote 30.3 97 0.0021 25.6 4.4 51 102-156 51-102 (161)
67 PF04340 DUF484: Protein of un 30.3 88 0.0019 26.6 4.3 54 83-145 10-65 (225)
68 PF12808 Mto2_bdg: Micro-tubul 30.2 1.8E+02 0.0038 20.6 5.1 43 97-140 7-49 (52)
69 TIGR00012 L29 ribosomal protei 30.1 64 0.0014 22.3 2.9 21 130-150 8-28 (55)
70 PRK14626 hypothetical protein; 29.8 85 0.0018 24.9 3.9 32 120-151 5-36 (110)
71 PRK14623 hypothetical protein; 29.7 73 0.0016 25.2 3.5 31 122-152 3-33 (106)
72 PF02996 Prefoldin: Prefoldin 29.5 1.4E+02 0.003 22.4 4.9 38 120-157 77-114 (120)
73 PF07716 bZIP_2: Basic region 29.5 1.3E+02 0.0029 20.2 4.3 26 122-147 27-52 (54)
74 PF15483 DUF4641: Domain of un 29.2 58 0.0013 31.9 3.4 30 115-145 414-443 (445)
75 PF04999 FtsL: Cell division p 29.0 1E+02 0.0022 22.7 4.0 37 122-158 37-73 (97)
76 PRK14625 hypothetical protein; 28.9 80 0.0017 25.1 3.6 32 121-152 3-34 (109)
77 CHL00154 rpl29 ribosomal prote 28.9 66 0.0014 23.5 2.9 23 129-151 14-36 (67)
78 PRK14149 heat shock protein Gr 28.2 1E+02 0.0022 26.8 4.4 29 120-148 43-71 (191)
79 cd00089 HR1 Protein kinase C-r 28.1 1.6E+02 0.0035 20.8 4.8 28 120-147 42-69 (72)
80 TIGR02231 conserved hypothetic 28.0 93 0.002 29.8 4.5 36 121-156 72-107 (525)
81 PF06295 DUF1043: Protein of u 27.6 70 0.0015 25.5 3.1 25 128-152 26-50 (128)
82 PRK11677 hypothetical protein; 27.5 1.5E+02 0.0031 24.5 5.0 34 121-154 30-63 (134)
83 PRK14622 hypothetical protein; 27.4 90 0.002 24.4 3.6 31 122-152 3-33 (103)
84 PF11471 Sugarporin_N: Maltopo 27.4 1.2E+02 0.0026 21.7 4.0 25 124-148 29-53 (60)
85 PF11336 DUF3138: Protein of u 27.3 75 0.0016 31.6 3.7 26 120-145 25-50 (514)
86 PRK11239 hypothetical protein; 27.2 89 0.0019 28.0 3.9 31 119-149 182-212 (215)
87 PF06696 Strep_SA_rep: Strepto 27.0 1.6E+02 0.0034 18.1 3.8 21 125-145 3-23 (25)
88 PF03242 LEA_3: Late embryogen 26.7 25 0.00053 27.4 0.3 20 104-123 58-77 (93)
89 PF04849 HAP1_N: HAP1 N-termin 26.7 46 0.001 31.0 2.1 85 72-158 153-244 (306)
90 PRK00888 ftsB cell division pr 26.7 1.1E+02 0.0025 23.7 4.0 27 122-148 36-62 (105)
91 PF12325 TMF_TATA_bd: TATA ele 26.7 1.2E+02 0.0027 24.3 4.4 27 120-146 30-56 (120)
92 PF11853 DUF3373: Protein of u 26.5 40 0.00088 33.3 1.8 24 122-145 33-56 (489)
93 PRK04406 hypothetical protein; 26.5 1.3E+02 0.0028 22.3 4.1 7 127-133 11-17 (75)
94 PF04508 Pox_A_type_inc: Viral 26.4 1.1E+02 0.0024 18.5 3.0 18 122-139 3-20 (23)
95 PRK00846 hypothetical protein; 26.2 1.4E+02 0.0029 22.7 4.2 25 122-146 36-60 (77)
96 PF10883 DUF2681: Protein of u 25.9 1.3E+02 0.0027 23.4 4.1 22 124-145 20-41 (87)
97 PF13600 DUF4140: N-terminal d 25.8 1.2E+02 0.0026 22.5 3.9 25 122-146 79-103 (104)
98 KOG4196 bZIP transcription fac 25.6 1.1E+02 0.0023 25.7 3.9 53 95-147 54-108 (135)
99 PF11471 Sugarporin_N: Maltopo 25.6 1.1E+02 0.0024 21.9 3.5 28 120-147 32-59 (60)
100 PRK14624 hypothetical protein; 25.5 99 0.0022 24.9 3.6 33 120-152 6-38 (115)
101 PF15397 DUF4618: Domain of un 25.3 1E+02 0.0022 28.1 4.0 54 83-144 52-105 (258)
102 PRK00587 hypothetical protein; 25.0 1.1E+02 0.0024 23.9 3.7 31 122-152 3-33 (99)
103 PF15294 Leu_zip: Leucine zipp 25.0 1.1E+02 0.0025 28.2 4.3 41 112-153 118-158 (278)
104 COG2919 Septum formation initi 24.9 1.5E+02 0.0032 23.3 4.5 28 119-146 49-76 (117)
105 PF14623 Vint: Hint-domain 24.6 28 0.0006 29.7 0.3 40 73-118 120-159 (162)
106 PF08227 DASH_Hsk3: DASH compl 24.5 1.5E+02 0.0033 20.4 3.9 29 121-149 3-31 (45)
107 PRK14161 heat shock protein Gr 24.2 1.2E+02 0.0026 25.9 4.0 28 121-148 27-54 (178)
108 PRK14549 50S ribosomal protein 24.0 92 0.002 22.7 2.9 22 130-151 15-36 (69)
109 PRK11677 hypothetical protein; 23.8 89 0.0019 25.8 3.1 25 127-151 29-53 (134)
110 PRK15396 murein lipoprotein; P 23.8 1E+02 0.0023 23.3 3.2 27 121-147 26-52 (78)
111 PRK00306 50S ribosomal protein 23.8 95 0.0021 22.1 2.9 20 131-150 13-32 (66)
112 cd00632 Prefoldin_beta Prefold 23.7 1.6E+02 0.0036 22.2 4.4 27 119-145 76-102 (105)
113 PF07820 TraC: TraC-like prote 23.6 1.4E+02 0.003 23.6 4.0 21 122-142 4-24 (92)
114 COG3105 Uncharacterized protei 23.4 1.6E+02 0.0035 24.8 4.5 34 123-156 37-70 (138)
115 PRK14141 heat shock protein Gr 23.4 1.2E+02 0.0027 26.6 4.1 28 121-148 39-66 (209)
116 TIGR01010 BexC_CtrB_KpsE polys 23.3 1.2E+02 0.0025 27.5 4.0 58 95-152 144-202 (362)
117 PF09849 DUF2076: Uncharacteri 23.1 56 0.0012 29.4 2.0 17 122-138 57-73 (247)
118 PF14257 DUF4349: Domain of un 22.8 1.5E+02 0.0033 25.6 4.5 27 119-145 161-187 (262)
119 PF01025 GrpE: GrpE; InterPro 22.8 1.5E+02 0.0032 23.7 4.2 25 122-146 20-44 (165)
120 PRK10963 hypothetical protein; 22.6 1.3E+02 0.0028 25.9 4.0 54 82-144 6-61 (223)
121 PRK00461 rpmC 50S ribosomal pr 22.5 94 0.002 23.9 2.8 19 124-142 12-30 (87)
122 PF04012 PspA_IM30: PspA/IM30 22.4 1.8E+02 0.0038 24.4 4.7 40 98-144 8-47 (221)
123 COG1729 Uncharacterized protei 22.4 98 0.0021 28.2 3.3 29 121-150 57-85 (262)
124 COG0255 RpmC Ribosomal protein 22.3 2.8E+02 0.006 20.5 5.1 27 123-149 14-40 (69)
125 PRK14147 heat shock protein Gr 22.3 1.4E+02 0.003 25.3 4.1 28 121-148 26-53 (172)
126 TIGR00103 DNA_YbaB_EbfC DNA-bi 22.2 1.4E+02 0.003 23.1 3.7 32 121-152 6-37 (102)
127 PRK03762 hypothetical protein; 22.1 1.3E+02 0.0029 23.6 3.7 31 122-152 7-37 (103)
128 PRK14629 hypothetical protein; 22.0 1.3E+02 0.0028 23.6 3.5 29 124-152 7-35 (99)
129 PRK09039 hypothetical protein; 21.9 1.8E+02 0.0039 26.9 5.0 25 120-144 144-168 (343)
130 PF10458 Val_tRNA-synt_C: Valy 21.8 1.3E+02 0.0027 21.3 3.2 23 122-144 6-28 (66)
131 PF15300 INT_SG_DDX_CT_C: INTS 21.8 53 0.0011 24.1 1.3 26 83-108 24-51 (65)
132 PF05064 Nsp1_C: Nsp1-like C-t 21.6 2.1E+02 0.0046 22.4 4.7 39 120-158 57-95 (116)
133 PRK15422 septal ring assembly 21.3 2.4E+02 0.0052 21.7 4.7 24 119-142 17-40 (79)
134 PRK14155 heat shock protein Gr 21.3 1.4E+02 0.0031 26.1 4.1 30 119-148 19-48 (208)
135 TIGR00219 mreC rod shape-deter 21.0 1.9E+02 0.004 26.1 4.8 36 123-158 69-108 (283)
136 PF11559 ADIP: Afadin- and alp 20.7 1.7E+02 0.0037 23.3 4.1 27 122-148 68-94 (151)
137 PRK14164 heat shock protein Gr 20.7 1.9E+02 0.0042 25.6 4.7 33 118-150 75-107 (218)
138 PF04859 DUF641: Plant protein 20.6 1.8E+02 0.004 23.9 4.3 27 123-149 97-123 (131)
139 PRK10884 SH3 domain-containing 20.5 1.5E+02 0.0032 25.8 4.0 25 118-142 91-115 (206)
140 PF13793 Pribosyltran_N: N-ter 20.4 59 0.0013 25.5 1.4 44 46-90 70-114 (116)
141 PRK00153 hypothetical protein; 20.3 1.4E+02 0.0031 22.8 3.4 32 121-152 4-35 (104)
142 PRK14621 hypothetical protein; 20.3 1.5E+02 0.0033 23.6 3.6 29 121-149 5-33 (111)
143 cd00890 Prefoldin Prefoldin is 20.3 98 0.0021 23.3 2.5 56 101-156 57-123 (129)
144 PRK14156 heat shock protein Gr 20.3 1.8E+02 0.0039 24.9 4.4 29 121-149 35-63 (177)
145 PF00172 Zn_clus: Fungal Zn(2) 20.2 63 0.0014 20.6 1.2 14 43-56 2-15 (40)
146 COG0576 GrpE Molecular chapero 20.0 1.8E+02 0.004 24.9 4.4 29 120-148 43-71 (193)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1.7e-50 Score=312.45 Aligned_cols=101 Identities=65% Similarity=1.056 Sum_probs=99.5
Q ss_pred CChhhHHhhhcCCCCCCCCcCCCCCCccchhhhhhhhchhhHHHHhhCCCCCCchhHHHHHHHHhhccccCCCCccHHHH
Q 045080 43 PCAACKSLRRRCDEKCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAI 122 (203)
Q Consensus 43 ~CAACK~lRRrC~~~CilAPYFP~d~~~~F~~vhkvFG~sNI~kmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I 122 (203)
+|||||||||||+++|+||||||++++++|.+||||||++||+|||+++++++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 123 SQLQKQVIKLQAELAKAQAET 143 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL 143 (203)
+.|++||+.+++||+.+++||
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999875
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.24 E-value=1.9 Score=38.57 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=58.7
Q ss_pred hHHHHhhCCCCCCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 83 NIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 83 NI~kmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
|+..-|+......|+..+..||-||-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+.+|.-
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445566777789999999999999999999999999999999999999999999999999887753
No 3
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.79 E-value=1.3 Score=36.26 Aligned_cols=82 Identities=21% Similarity=0.253 Sum_probs=55.9
Q ss_pred cchhhhhhhhchhhHHHHhhCCCCCCc---hhHHHHHHHHhhccccCCCCcc-----HHHHHHHHHHHHHHHHHHHHHHH
Q 045080 70 QNFIIVHRVFGASNIIKCLQGLPECQR---SDAVSSMVYEANARIRNPVHGC-----AGAISQLQKQVIKLQAELAKAQA 141 (203)
Q Consensus 70 ~~F~~vhkvFG~sNI~kmLq~lp~~~R---~dA~~SLvYEA~aR~rDPVyGC-----vG~I~~Lq~qi~~lq~eLa~aq~ 141 (203)
.-|.|+|.-||-..|.|.|..|-...+ ...=...||=++--.-+-+..- =.-|..|+.++..++.++..+++
T Consensus 21 di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~ 100 (169)
T PF07106_consen 21 DIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEA 100 (169)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999866543 2344556776665544322221 23467777777777777777777
Q ss_pred HHHHhhhcch
Q 045080 142 ETVSMQCQRD 151 (203)
Q Consensus 142 eL~~~q~q~~ 151 (203)
||..+..+..
T Consensus 101 eL~~L~~~~t 110 (169)
T PF07106_consen 101 ELASLSSEPT 110 (169)
T ss_pred HHHHHhcCCC
Confidence 7777665553
No 4
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=76.90 E-value=8 Score=34.69 Aligned_cols=63 Identities=14% Similarity=0.126 Sum_probs=56.2
Q ss_pred HHHHhhCCCCCCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 84 IIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 84 I~kmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
+..-|+.+....|+.-++.+|-|+-.|.=|-+|=-+-.|..++.=|++++++|+.++.+|...
T Consensus 12 lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 12 LFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444567777779999999999999999999999999999999999999999999999998653
No 5
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=75.09 E-value=2.8 Score=32.46 Aligned_cols=25 Identities=44% Similarity=0.517 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 118 CAGAISQLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 118 CvG~I~~Lq~qi~~lq~eLa~aq~e 142 (203)
-.-.|..|.+.|..||.||+.||++
T Consensus 71 Th~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 71 THEAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3446788899999999999988864
No 6
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=74.43 E-value=8.1 Score=27.93 Aligned_cols=31 Identities=23% Similarity=0.424 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
|-.|+..|..|++|++.+++++..-+.+.+-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r~A 53 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASRAA 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999877655543
No 7
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=70.11 E-value=10 Score=26.44 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
|..|.+|+..|+.+|..+|+.+..++
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999998887664
No 8
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=68.04 E-value=9.3 Score=29.52 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
|.+|+.+.+.++.|.+.+++|+.+++-++-|.-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee 64 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 566777777777788888888888887776653
No 9
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=67.85 E-value=11 Score=28.82 Aligned_cols=33 Identities=9% Similarity=0.021 Sum_probs=28.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 116 HGCAGAISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 116 yGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
+-.+++|..|-.||+.|++|+..++++|..+..
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346889999999999999999999999877654
No 10
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=66.74 E-value=9.9 Score=29.62 Aligned_cols=37 Identities=24% Similarity=0.239 Sum_probs=23.7
Q ss_pred CccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 116 HGCAG--AISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 116 yGCvG--~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
+|--| .+.+++++++.++.+++.++++...++.+-..
T Consensus 21 ~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 21 FGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 46778888888888777777666655444433
No 11
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.67 E-value=14 Score=29.75 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=32.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 116 HGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 116 yGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
...+++|..|+.+|..++.|++.+|.++..++.+...+-+
T Consensus 12 ~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~ 51 (120)
T PF12325_consen 12 GPSVQLVERLQSQLRRLEGELASLQEELARLEAERDELRE 51 (120)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999888777666543
No 12
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=63.51 E-value=18 Score=25.15 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
+..+++++..++.+++.++.+...++.+-..+
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777666666655444443
No 13
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.32 E-value=13 Score=32.99 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
..+..|++||+.+|.|++.+|-++...+.|-..+..
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 356788999999999999888888766655555443
No 14
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=62.53 E-value=17 Score=25.00 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 123 SQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
..+++++.+++.+++.++.|+...
T Consensus 44 ~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 44 LRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777777777777777777654
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.94 E-value=28 Score=30.27 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKE 160 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~~~~ 160 (203)
|..|+.+.++|+.||..+++|+...+.+...+-.-+.|+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556888888888888888887766555544443333333
No 16
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=54.59 E-value=34 Score=25.38 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
|-.|.+.|..||+|++.+++|++.-.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677888888888888888887543
No 17
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.60 E-value=94 Score=29.81 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
+..+.+|..|++.++||+.-++||.
T Consensus 228 e~~~aeq~slkRt~EeL~~G~~kL~ 252 (365)
T KOG2391|consen 228 ERLQAEQESLKRTEEELNIGKQKLV 252 (365)
T ss_pred HHHHHHHHHHHhhHHHHHhhHHHHH
Confidence 4455666666666666665555544
No 18
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=53.27 E-value=14 Score=33.14 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH---hhhcchhh
Q 045080 127 KQVIKLQAELAKAQAETVS---MQCQRDNL 153 (203)
Q Consensus 127 ~qi~~lq~eLa~aq~eL~~---~q~q~~n~ 153 (203)
++|..||.||+.+|+||+. .|.|.+.+
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe~~~~~ 151 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQEQSNST 151 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4555666666666666553 45444443
No 19
>PF14282 FlxA: FlxA-like protein
Probab=52.80 E-value=25 Score=27.31 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQA 141 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~ 141 (203)
...|..|++||..|+.+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777777777777777765444
No 20
>smart00150 SPEC Spectrin repeats.
Probab=51.91 E-value=53 Score=22.48 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=35.8
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 112 RNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 112 rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
.+++.+.+..|..+.++.+.++.++...+..+..+......|++
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~ 66 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIE 66 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999888888887766666654
No 21
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=51.01 E-value=29 Score=25.48 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
.|..|..|++.|++||+.++++|-
T Consensus 66 ~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 66 RILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344588899999999988887763
No 22
>PLN02523 galacturonosyltransferase
Probab=49.72 E-value=32 Score=34.58 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=43.6
Q ss_pred HHhhCCCCC--CchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 86 KCLQGLPEC--QRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 86 kmLq~lp~~--~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
..+++|+.+ +|..+|+.++++|.. +|-|..+|.+|+..|..+++++..++.+-+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~ 200 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGA 200 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677755 678999999999983 555778999999999999999998876544
No 23
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=49.60 E-value=27 Score=25.01 Aligned_cols=31 Identities=35% Similarity=0.384 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 123 SQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
..++.++..++.++..+++|...++.+.+.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555554444443
No 24
>smart00338 BRLZ basic region leucin zipper.
Probab=48.89 E-value=55 Score=22.69 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
.|..|+.+++.|+.+...++.++..++.+...+-
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777666666666665555443
No 25
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=48.86 E-value=22 Score=26.29 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 045080 118 CAGAISQLQKQVIKLQAELAKAQ 140 (203)
Q Consensus 118 CvG~I~~Lq~qi~~lq~eLa~aq 140 (203)
.+++|.+|-.+|+.|+.||..++
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999998765
No 26
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=48.75 E-value=20 Score=34.31 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~e 142 (203)
.|.+||+||..||+||..++.+
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777777777777665554
No 27
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=47.92 E-value=24 Score=29.31 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
+....++.+|++++.||+.++.++..++.|-.++.
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999999999999999999888874
No 28
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=47.01 E-value=55 Score=25.17 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 118 CAGAISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 118 CvG~I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
|...+..+..+|++.+++|+.++.+|..+
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888888888888888888888754
No 29
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=45.64 E-value=22 Score=26.96 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=20.0
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 113 NPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 113 DPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
-||.|.+-+.-+++.+.+.--..-+.+|.+|...+
T Consensus 7 aPvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~ 41 (79)
T PF05120_consen 7 APVRGVVWVAEQIQEQAERELYDPAAIRRELAELQ 41 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 36666666666666665543334446666666544
No 30
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.57 E-value=44 Score=25.53 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 117 GCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 117 GCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
-++-.|..||-+|++|+.+-..+..|....|.+..+|
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL 51 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREAL 51 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 3567888899999999888887777777666665554
No 31
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.40 E-value=50 Score=29.56 Aligned_cols=53 Identities=28% Similarity=0.410 Sum_probs=28.9
Q ss_pred hhhhhchhhHHHHhhCCCCCCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 75 VHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 75 vhkvFG~sNI~kmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
.||+||..+- ..|+..-.++..++=- |. -.+..+|..|.+||.+.+.+|.+++
T Consensus 1 MnRiFG~~k~-----k~p~psL~dai~~v~~----r~-----------dSve~KIskLDaeL~k~~~Qi~k~R 53 (218)
T KOG1655|consen 1 MNRIFGRGKP-----KEPPPSLQDAIDSVNK----RS-----------DSVEKKISKLDAELCKYKDQIKKTR 53 (218)
T ss_pred CcccccCCCC-----CCCChhHHHHHHHHHH----hh-----------hhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3799998863 2444444455555422 21 2345556666666666666555443
No 32
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=44.30 E-value=38 Score=30.82 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=38.2
Q ss_pred hhhhhhchh--hHHHHhhCCCCC-CchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHH
Q 045080 74 IVHRVFGAS--NIIKCLQGLPEC-QRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELA 137 (203)
Q Consensus 74 ~vhkvFG~s--NI~kmLq~lp~~-~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa 137 (203)
++-++|-.. -+.+||+-+++. +|+.+|+.|--+-+.|. ..|.+||.++...+.-|+
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD--------~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRD--------EVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHH
Confidence 444555443 456677766654 68999998855555554 369999999988766665
No 33
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.68 E-value=46 Score=23.06 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
.|..|+.+++.++.+...++.++..++.
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666666666666666666666633
No 34
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=43.38 E-value=29 Score=26.39 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=48.0
Q ss_pred CCccchhhhhhhhchhhHHHHhhCCCCCC--chhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHH
Q 045080 67 TEPQNFIIVHRVFGASNIIKCLQGLPECQ--RSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAEL 136 (203)
Q Consensus 67 d~~~~F~~vhkvFG~sNI~kmLq~lp~~~--R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eL 136 (203)
++|+.|....+ .-|-.++...|++. |-.++.+-|=---.|.++|+..|+-+...+..++..++..|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666655443 45667888888875 34455555555567889999999999999999998887655
No 35
>PRK09039 hypothetical protein; Validated
Probab=42.57 E-value=46 Score=30.76 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
..|..|++||+.|+.+|+.++++|..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666653
No 36
>PF14282 FlxA: FlxA-like protein
Probab=42.54 E-value=33 Score=26.57 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Q 045080 127 KQVIKLQAELAKAQAETVSMQCQR 150 (203)
Q Consensus 127 ~qi~~lq~eLa~aq~eL~~~q~q~ 150 (203)
.++..|+++|..++++|+.++.|.
T Consensus 51 ~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 51 QQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 37
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=42.15 E-value=57 Score=25.37 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALI 157 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~ 157 (203)
.-|..|+.++..+..|...++.+|...+..-..|+.++
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677888888888888888888877776666676653
No 38
>PHA02047 phage lambda Rz1-like protein
Probab=40.32 E-value=68 Score=25.71 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=28.6
Q ss_pred ccHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 117 GCAGAIS------QLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 117 GCvG~I~------~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
|.+|.+. ..++.++++.++|..++.++..+|.|-.++-+
T Consensus 18 ~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~ 62 (101)
T PHA02047 18 ASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRHVQAVEA 62 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 34668888899999999999888877666654
No 39
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=39.81 E-value=52 Score=24.53 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 118 CAGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 118 CvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
--..+..|+.+|+.++.+++.++.++...+.|
T Consensus 68 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 68 DSPELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478888999999998888888888766544
No 40
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.42 E-value=96 Score=21.46 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
.|..|+.++..|+.+...++.++..++.....|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777666555554
No 41
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.85 E-value=69 Score=25.57 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
...|++++++.+.||+.-|.++..+=.+-+.|+.
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~ 60 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLD 60 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777665555555543
No 42
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=38.64 E-value=1.3e+02 Score=20.54 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=42.1
Q ss_pred HHHHHHHHhhccc-cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 99 AVSSMVYEANARI-RNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 99 A~~SLvYEA~aR~-rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
.+..-+-++...+ ..++.+-...+..+..++..++.++...+.++..+......|.
T Consensus 12 ~l~~Wl~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~ 68 (105)
T PF00435_consen 12 ELLDWLQETEAKLSSSEPGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLI 68 (105)
T ss_dssp HHHHHHHHHHHHHCSCTHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555554 4445889999999999999999999999988888776666653
No 43
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=37.84 E-value=50 Score=25.08 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
+|..|+.+..+|+.+|.++.+||...
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888889999999888888764
No 44
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=37.62 E-value=69 Score=23.43 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 117 GCAGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 117 GCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
|.+.-+...-..+.+|++|+..++.||...+.|
T Consensus 37 ~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 37 SAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 455555666677778888888888887766543
No 45
>smart00338 BRLZ basic region leucin zipper.
Probab=37.47 E-value=80 Score=21.85 Aligned_cols=32 Identities=16% Similarity=0.297 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 118 CAGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 118 CvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
--+-|..|+.+...|+.++..++.++..+..+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888777766543
No 46
>PRK14127 cell division protein GpsB; Provisional
Probab=37.29 E-value=71 Score=25.53 Aligned_cols=30 Identities=27% Similarity=0.286 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
+-.|..++..|+.++..++.+|..++.|.+
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556666666666666666666655444
No 47
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=37.27 E-value=53 Score=28.99 Aligned_cols=31 Identities=39% Similarity=0.541 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
.|-|+-|++|+.+.|+|++.=-.||+.++.|
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~q 39 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQ 39 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5889999999999999988655666655444
No 48
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=37.17 E-value=57 Score=29.41 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.3
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 112 RNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 112 rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
.-|+.|.-..|..|.++.+.+.++++..+++++..+.|
T Consensus 172 vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~q 209 (259)
T PF08657_consen 172 VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQ 209 (259)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44999999999999999999999999999999875443
No 49
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=36.93 E-value=37 Score=30.56 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAK 138 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~ 138 (203)
..-|..||.+|..|++|||+
T Consensus 121 lqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665
No 50
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=36.49 E-value=72 Score=27.35 Aligned_cols=37 Identities=22% Similarity=0.287 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALIC 158 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~~ 158 (203)
+..|+.++..|+.|+..++.++..++.....|+.|+.
T Consensus 113 ~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 113 NESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888888877653
No 51
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=36.29 E-value=78 Score=22.79 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
|..|..+|..|..++..++.++.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444443
No 52
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.95 E-value=51 Score=29.20 Aligned_cols=36 Identities=11% Similarity=0.166 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
..-|..||++|.+|+.++...+.+|..++.++..+-
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998877666653
No 53
>TIGR03021 pilP_fam type IV pilus biogenesis protein PilP. Members of this protein family are found in type IV pilus biogenesis loci and include proteins designated PilP.
Probab=35.66 E-value=61 Score=25.96 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~e 142 (203)
+|-+..||.|...++++++.++.+
T Consensus 4 ~~eLe~iQ~et~LleAq~~~akaq 27 (119)
T TIGR03021 4 VGQLEALQSETALLEAQLARAKAQ 27 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888877765543
No 54
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=34.24 E-value=40 Score=33.29 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=23.2
Q ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 113 NPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 113 DPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
.|.....--|..+| ||++|+.||+.+++|+..++.
T Consensus 18 ~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 18 LPAAAMADDIDLLQ-KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred cchhhhhhhhHHHH-HHHHHHHHHHHHHHhhccccc
Confidence 34444444455556 888888888888888774433
No 55
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=33.55 E-value=68 Score=22.88 Aligned_cols=33 Identities=30% Similarity=0.250 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 123 SQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
...+.++..++.++..++.++...+.+...|-.
T Consensus 20 v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ 52 (85)
T TIGR02209 20 VSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQL 52 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777777777777777766666653
No 56
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=33.18 E-value=97 Score=26.99 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=29.6
Q ss_pred ccccCCCCccHH---HHHHHHHHHHHHHHHHHHHHHHHHH---hhhcchhhHHHH
Q 045080 109 ARIRNPVHGCAG---AISQLQKQVIKLQAELAKAQAETVS---MQCQRDNLVALI 157 (203)
Q Consensus 109 aR~rDPVyGCvG---~I~~Lq~qi~~lq~eLa~aq~eL~~---~q~q~~n~~~~~ 157 (203)
.+..+.+.+.+. -+..|+.+.++|++|++.++.++.. ++.+...|-.++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 55 NAPREFVSGVFESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444443 3466777888888888888877774 345555555544
No 57
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.11 E-value=66 Score=23.75 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=15.6
Q ss_pred CccHHHHHHHHHHHHHHHHHHH
Q 045080 116 HGCAGAISQLQKQVIKLQAELA 137 (203)
Q Consensus 116 yGCvG~I~~Lq~qi~~lq~eLa 137 (203)
-..+-.|..|+.++..|+.+-.
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888877633
No 58
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=33.08 E-value=55 Score=22.82 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcch
Q 045080 130 IKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 130 ~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
++|+.+|..++.+|.+++.|.+
T Consensus 10 ~eL~~~l~elk~eL~~Lr~q~~ 31 (58)
T PF00831_consen 10 EELQEKLEELKKELFNLRFQKA 31 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544
No 59
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=32.62 E-value=76 Score=26.18 Aligned_cols=74 Identities=22% Similarity=0.341 Sum_probs=52.4
Q ss_pred HHHHhhC--CCCCCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhh
Q 045080 84 IIKCLQG--LPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEM 161 (203)
Q Consensus 84 I~kmLq~--lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~~~~~ 161 (203)
+..++.+ ++++.-.|++.+| .....|-+-|++.+|..++..+..+++|..+.++.-...+-+..+|-..+--.|
T Consensus 13 l~~~~e~~~~d~e~~~dtLe~i----~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m 88 (162)
T PF05565_consen 13 LLELLEEGDLDEEAIADTLESI----EDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAM 88 (162)
T ss_pred HHHHHhcCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443 3343444555552 555677899999999999999999999999988877777777777766665333
No 60
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=32.25 E-value=52 Score=24.41 Aligned_cols=20 Identities=45% Similarity=0.604 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045080 121 AISQLQKQVIKLQAELAKAQ 140 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq 140 (203)
.|-.||.+|++|++||++-.
T Consensus 33 RIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 33 RIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 36788888888888887643
No 61
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=32.03 E-value=1.2e+02 Score=21.37 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
+....+.++......|..++.+|..++.
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666655543
No 62
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=31.70 E-value=15 Score=28.61 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
--+..|+.+|..++.+|+..+.++..++.|..+
T Consensus 13 K~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 13 KELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ------------------------------HT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 346678888888888888888888877766655
No 63
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=31.39 E-value=21 Score=25.06 Aligned_cols=16 Identities=38% Similarity=1.016 Sum_probs=14.7
Q ss_pred CCChhhHHhhhcCCCC
Q 045080 42 SPCAACKSLRRRCDEK 57 (203)
Q Consensus 42 ~~CAACK~lRRrC~~~ 57 (203)
..|..||-+|++|..|
T Consensus 21 ~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 21 SKCLPCRKRRKRCTRD 36 (52)
T ss_pred ccChhhccCCCCCCCC
Confidence 7899999999999876
No 64
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.32 E-value=48 Score=31.18 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=4.1
Q ss_pred CCchhHHHHH
Q 045080 94 CQRSDAVSSM 103 (203)
Q Consensus 94 ~~R~dA~~SL 103 (203)
..|..++..|
T Consensus 150 ~er~~il~~l 159 (562)
T PHA02562 150 PARRKLVEDL 159 (562)
T ss_pred HhHHHHHHHH
Confidence 3444444433
No 65
>PRK06798 fliD flagellar capping protein; Validated
Probab=31.02 E-value=1.4e+02 Score=28.60 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=12.5
Q ss_pred cchhhhhhhh-chhhHHHHhh
Q 045080 70 QNFIIVHRVF-GASNIIKCLQ 89 (203)
Q Consensus 70 ~~F~~vhkvF-G~sNI~kmLq 89 (203)
+++..|.++| |..+|.+-|.
T Consensus 344 ~np~~V~~lF~g~~Gia~~l~ 364 (440)
T PRK06798 344 ENPDAAKQFFFGINGLGKEME 364 (440)
T ss_pred HCHHHHHHHhcCCCcHHHHHH
Confidence 4567788888 4455555544
No 66
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=30.26 E-value=97 Score=25.58 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=34.9
Q ss_pred HHHHHhhc-cccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH
Q 045080 102 SMVYEANA-RIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVAL 156 (203)
Q Consensus 102 SLvYEA~a-R~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~ 156 (203)
.+.-|.++ -.+| =+.--.+|+++++.+++||+..++++...+..-...+..
T Consensus 51 ~l~~E~~~iS~qD----eFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~ 102 (161)
T PF04420_consen 51 QLKRELNAISAQD----EFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSK 102 (161)
T ss_dssp HHHHHHTTS-TTT----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 3444 566677899999999999999999888766655554443
No 67
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=30.25 E-value=88 Score=26.60 Aligned_cols=54 Identities=15% Similarity=0.359 Sum_probs=21.6
Q ss_pred hHHHHhhCCCC--CCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 83 NIIKCLQGLPE--CQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 83 NI~kmLq~lp~--~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
.|...|++=|. .+..+++..|. +..|. -|+|+-.++|++.|+++...++.+|..
T Consensus 10 ~V~~yL~~~PdFf~~~~~ll~~l~------~ph~~---~~avSL~erQ~~~LR~~~~~L~~~l~~ 65 (225)
T PF04340_consen 10 DVAAYLRQHPDFFERHPELLAELR------LPHPS---GGAVSLVERQLERLRERNRQLEEQLEE 65 (225)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHhCHHHHHHcC------CCCCC---CCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555553 35566666553 44453 368999999999999998888887764
No 68
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=30.23 E-value=1.8e+02 Score=20.60 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=29.5
Q ss_pred hhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 045080 97 SDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQ 140 (203)
Q Consensus 97 ~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq 140 (203)
.+...-+.-|=++|..|+ .|+---|..|..+...|+++|...|
T Consensus 7 ~ELe~klkaerE~R~~d~-~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 7 EELERKLKAEREARSLDR-SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHhHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777778888887 4566667777777777777776554
No 69
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=30.07 E-value=64 Score=22.27 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 045080 130 IKLQAELAKAQAETVSMQCQR 150 (203)
Q Consensus 130 ~~lq~eLa~aq~eL~~~q~q~ 150 (203)
++|+++|..++.||.+++.|+
T Consensus 8 ~EL~~~l~~lr~eLf~Lr~~~ 28 (55)
T TIGR00012 8 EELAKKLDELKKELFELRFQK 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666555544
No 70
>PRK14626 hypothetical protein; Provisional
Probab=29.81 E-value=85 Score=24.86 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
|-+..+.+|.+++|.++..+|+||++......
T Consensus 5 gn~~~mmkqaq~mQ~km~~~qeeL~~~~v~g~ 36 (110)
T PRK14626 5 GNLAELMKQMQSIKENVEKAKEELKKEEIVVE 36 (110)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccEEEEE
Confidence 45778889999999999999999998765444
No 71
>PRK14623 hypothetical protein; Provisional
Probab=29.72 E-value=73 Score=25.22 Aligned_cols=31 Identities=3% Similarity=0.094 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
+..|.+|.+.+|.++..+|+||++.......
T Consensus 3 ~~~~mkqaqkmQ~km~~~Qeel~~~~v~g~s 33 (106)
T PRK14623 3 MMGMMGKLKEAQQKVEATKKRLDTVLIDEQS 33 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEE
Confidence 6788899999999999999999987765543
No 72
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=29.55 E-value=1.4e+02 Score=22.43 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALI 157 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~ 157 (203)
-.+..|++++..++.++...+.++..++.+-..+...+
T Consensus 77 eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 77 EAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888887777666665443
No 73
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.52 E-value=1.3e+02 Score=20.24 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
+..|+.++..|+.+...++.++..++
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666666666666655543
No 74
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=29.21 E-value=58 Score=31.93 Aligned_cols=30 Identities=30% Similarity=0.493 Sum_probs=22.6
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 115 VHGCAGAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 115 VyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
+-||-.-| .||++|++|++||+.+|.=...
T Consensus 414 ~qGCpRC~-~LQkEIedLreQLaamqsl~~k 443 (445)
T PF15483_consen 414 AQGCPRCL-VLQKEIEDLREQLAAMQSLADK 443 (445)
T ss_pred CCCCcccH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 34666555 5999999999999998865443
No 75
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=28.98 E-value=1e+02 Score=22.74 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALIC 158 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~~ 158 (203)
+..+..++++++.|...++.|-.+++...+++-..-.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~r 73 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSR 73 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 3445555666666666666666555555555544433
No 76
>PRK14625 hypothetical protein; Provisional
Probab=28.89 E-value=80 Score=25.14 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
-+..+.+|.+.+|.++..+|+||++.......
T Consensus 3 nm~~mmkqaq~mQ~km~~~Q~el~~~~v~g~s 34 (109)
T PRK14625 3 DLGGLMKQAQAMQQKLADAQARLAETTVEGTS 34 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccEEEEEE
Confidence 36788899999999999999999987766544
No 77
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=28.86 E-value=66 Score=23.45 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcch
Q 045080 129 VIKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 129 i~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
+++|+++|..++.||-+++.|++
T Consensus 14 ~~eL~~~l~elk~elf~LRfq~a 36 (67)
T CHL00154 14 DSEISEEIIKTKKELFDLRLKKA 36 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665544
No 78
>PRK14149 heat shock protein GrpE; Provisional
Probab=28.24 E-value=1e+02 Score=26.81 Aligned_cols=29 Identities=3% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
..|..|+.++.+++..+.++++++.|++.
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rK 71 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKK 71 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999999999887653
No 79
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=28.15 E-value=1.6e+02 Score=20.83 Aligned_cols=28 Identities=4% Similarity=0.118 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
|.+...+.++.+....|..++.+|..++
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777776654
No 80
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=27.99 E-value=93 Score=29.76 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVAL 156 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~ 156 (203)
.|..|+.+|+.++.+++.+++++...+.+.+=|-++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 107 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDI 107 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999998888777666544433
No 81
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.64 E-value=70 Score=25.54 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 128 QVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 128 qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
+...|+.||..+|.||..+|.+-..
T Consensus 26 ~q~~l~~eL~~~k~el~~yk~~V~~ 50 (128)
T PF06295_consen 26 KQAKLEQELEQAKQELEQYKQEVND 50 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888877755443
No 82
>PRK11677 hypothetical protein; Provisional
Probab=27.50 E-value=1.5e+02 Score=24.51 Aligned_cols=34 Identities=29% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
....|++++++.+.||..-|.|+..+=.+-+.|+
T Consensus 30 ~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll 63 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQELVSHFARSAELL 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777766666665444444444
No 83
>PRK14622 hypothetical protein; Provisional
Probab=27.41 E-value=90 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
+..|.+|.+++|.++..+|++|.+.......
T Consensus 3 ~~~lmkqaq~mQ~~m~~~q~el~~~~v~g~s 33 (103)
T PRK14622 3 IQYLMRQAKKLEKAMADAKEKLAEIAVEAES 33 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEE
Confidence 5678899999999999999999987655443
No 84
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=27.39 E-value=1.2e+02 Score=21.70 Aligned_cols=25 Identities=12% Similarity=0.314 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 124 QLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 124 ~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
.++++++.|+.+|..++.++...+.
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~ 53 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEA 53 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777666665443
No 85
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=27.27 E-value=75 Score=31.59 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
-.|..|+.||+.||.|...+|++|+.
T Consensus 25 ~~i~~L~~ql~aLq~~v~eL~~~laa 50 (514)
T PF11336_consen 25 DQIKALQAQLQALQDQVNELRAKLAA 50 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45778888888888888888887763
No 86
>PRK11239 hypothetical protein; Provisional
Probab=27.18 E-value=89 Score=27.96 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
.+.+..|+.+|..|++|++.+++++..+..|
T Consensus 182 ~~~~~~Le~rv~~Le~eva~L~~~l~~l~~~ 212 (215)
T PRK11239 182 NAVDGDLQARVEALEIEVAELKQRLDSLLAH 212 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556779999999999999999888876543
No 87
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=26.99 E-value=1.6e+02 Score=18.09 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 125 LQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 125 Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
.|..+..-|+||+.+|.+++.
T Consensus 3 Yqakla~YqaeLa~vqk~na~ 23 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANAD 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 355666777777777776654
No 88
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=26.75 E-value=25 Score=27.39 Aligned_cols=20 Identities=20% Similarity=0.275 Sum_probs=16.6
Q ss_pred HHHhhccccCCCCccHHHHH
Q 045080 104 VYEANARIRNPVHGCAGAIS 123 (203)
Q Consensus 104 vYEA~aR~rDPVyGCvG~I~ 123 (203)
-.|-..|.+|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 66778999999999987654
No 89
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=26.70 E-value=46 Score=31.05 Aligned_cols=85 Identities=24% Similarity=0.294 Sum_probs=65.9
Q ss_pred hhhhhhhhchhhHHHHhhCCCCC---CchhHHHH----HHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 72 FIIVHRVFGASNIIKCLQGLPEC---QRSDAVSS----MVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 72 F~~vhkvFG~sNI~kmLq~lp~~---~R~dA~~S----LvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
+...|+.|-..++.+-|+.|.++ .|.+|-.- .-||-..+.- |.+||.-+.....||..|..+|+.=..+..
T Consensus 153 ~~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqL--v~dcv~QL~~An~qia~LseELa~k~Ee~~ 230 (306)
T PF04849_consen 153 SLSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQL--VLDCVKQLSEANQQIASLSEELARKTEENR 230 (306)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHH--HHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence 34466677777777777777654 45555433 3688777766 889999999999999999999999889999
Q ss_pred HhhhcchhhHHHHH
Q 045080 145 SMQCQRDNLVALIC 158 (203)
Q Consensus 145 ~~q~q~~n~~~~~~ 158 (203)
.+|.+..+|++-+.
T Consensus 231 rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 231 RQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHH
Confidence 98888888887664
No 90
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.67 E-value=1.1e+02 Score=23.70 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
|..++++++.++++.+.++.|+..++.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445566666666666666666665554
No 91
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.66 E-value=1.2e+02 Score=24.34 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
|-|..|++++..++++-..+.+||..+
T Consensus 30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l 56 (120)
T PF12325_consen 30 GELASLQEELARLEAERDELREEIVKL 56 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777653
No 92
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.47 E-value=40 Score=33.27 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
|-.|++||++||+|+...+.++..
T Consensus 33 ie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 33 IEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHhhcccccccch
Confidence 556666666666666555544443
No 93
>PRK04406 hypothetical protein; Provisional
Probab=26.47 E-value=1.3e+02 Score=22.29 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 045080 127 KQVIKLQ 133 (203)
Q Consensus 127 ~qi~~lq 133 (203)
.+|.+|+
T Consensus 11 ~Ri~~LE 17 (75)
T PRK04406 11 ERINDLE 17 (75)
T ss_pred HHHHHHH
Confidence 3333333
No 94
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=26.40 E-value=1.1e+02 Score=18.53 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKA 139 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~a 139 (203)
|..|+.+|.+|+.+|..-
T Consensus 3 ~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567888888888888754
No 95
>PRK00846 hypothetical protein; Provisional
Probab=26.22 E-value=1.4e+02 Score=22.65 Aligned_cols=25 Identities=0% Similarity=-0.058 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
|...+++|..++.+|..+..+|..+
T Consensus 36 v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 36 LADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 96
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=25.89 E-value=1.3e+02 Score=23.36 Aligned_cols=22 Identities=32% Similarity=0.151 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045080 124 QLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 124 ~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
.+-+++..++.|.+++++|...
T Consensus 20 y~~~k~~ka~~~~~kL~~en~q 41 (87)
T PF10883_consen 20 YLWWKVKKAKKQNAKLQKENEQ 41 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544444443
No 97
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.79 E-value=1.2e+02 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
|..|+.++..++.++..++.+++-+
T Consensus 79 l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 79 LEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666666666666666555443
No 98
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=25.62 E-value=1.1e+02 Score=25.71 Aligned_cols=53 Identities=25% Similarity=0.323 Sum_probs=27.6
Q ss_pred CchhHHHHHHHHhhccccCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 95 QRSDAVSSMVYEANARIRNP--VHGCAGAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 95 ~R~dA~~SLvYEA~aR~rDP--VyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
||..+.+-==|-+++|++-= -.+-=.-=..|++||+.|+.|++.++.|+-.++
T Consensus 54 QrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 54 QRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667778888886510 000000013355555555555666665555443
No 99
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=25.57 E-value=1.1e+02 Score=21.88 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
-.+-.|+++++..+.++..++.++..++
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3477899999999999999998887653
No 100
>PRK14624 hypothetical protein; Provisional
Probab=25.51 E-value=99 Score=24.85 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
+-+..+.+|.+..|+++..+|++|++.......
T Consensus 6 ~nm~~~mkqAq~mQ~km~~~QeeL~~~~v~g~s 38 (115)
T PRK14624 6 KNMSEALSNMGNIREKMEEVKKRIASIRVVGDA 38 (115)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccEEEEEE
Confidence 346788899999999999999999987655544
No 101
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.25 E-value=1e+02 Score=28.09 Aligned_cols=54 Identities=24% Similarity=0.230 Sum_probs=35.3
Q ss_pred hHHHHhhCCCCCCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 83 NIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 83 NI~kmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
+++.+|+.-...+. +.+++=+-|..-+.. --+..|++|+..|.++|..++.||.
T Consensus 52 ~~i~~le~~~~~~l-~~ak~eLqe~eek~e-------~~l~~Lq~ql~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 52 TAIDILEYSNHKQL-QQAKAELQEWEEKEE-------SKLSKLQQQLEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHccChHHH-HHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444 334444445554443 4578899999999999999888876
No 102
>PRK00587 hypothetical protein; Provisional
Probab=24.98 E-value=1.1e+02 Score=23.92 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
+..|.+|.+.+|.++..+|++|++.......
T Consensus 3 ~~~lmkqaqkmQ~km~~~QeeL~~~~v~g~~ 33 (99)
T PRK00587 3 FQKLAQQLKKMQNTMEKKQKEFEEKEFDFDY 33 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEc
Confidence 4678889999999999999999987765543
No 103
>PF15294 Leu_zip: Leucine zipper
Probab=24.96 E-value=1.1e+02 Score=28.15 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=32.3
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 112 RNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 112 rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
--|+.+. |.+-.|+.+|.+|++|..++++.|..++.|-...
T Consensus 118 L~pl~e~-g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~ 158 (278)
T PF15294_consen 118 LEPLNES-GGSELLNKEIDRLQEENEKLKERLKSLEKQATSA 158 (278)
T ss_pred ccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466655 8889999999999999999999998776654443
No 104
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=24.93 E-value=1.5e+02 Score=23.30 Aligned_cols=28 Identities=39% Similarity=0.487 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
+..+..++.++..+++|++.+.++-..+
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l 76 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTAL 76 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777655554443
No 105
>PF14623 Vint: Hint-domain
Probab=24.56 E-value=28 Score=29.74 Aligned_cols=40 Identities=28% Similarity=0.510 Sum_probs=29.5
Q ss_pred hhhhhhhchhhHHHHhhCCCCCCchhHHHHHHHHhhccccCCCCcc
Q 045080 73 IIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGC 118 (203)
Q Consensus 73 ~~vhkvFG~sNI~kmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGC 118 (203)
..+|.+||...|.+-|..|+.-.-. +.+.....|||..|-
T Consensus 120 vraH~fFG~~~V~~~L~~L~~~~~G------~v~~~g~~Rd~~Tgl 159 (162)
T PF14623_consen 120 VRAHAFFGDNAVVRDLASLPGFANG------VVECRGVKRDPETGL 159 (162)
T ss_pred EEeecccCcHHHHHHHHhCCCCCCC------EEEecceEECccccc
Confidence 3489999999999999999874222 344555588887764
No 106
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=24.53 E-value=1.5e+02 Score=20.35 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
-+.+|..|++.|++-|+.+.+.|..+-.|
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~s~Q 31 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMTSIQ 31 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 36788888888888888888777654333
No 107
>PRK14161 heat shock protein GrpE; Provisional
Probab=24.17 E-value=1.2e+02 Score=25.90 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
.|..|+.++.+++..+.++++++.|++.
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rk 54 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRK 54 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888887653
No 108
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=23.95 E-value=92 Score=22.66 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcch
Q 045080 130 IKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 130 ~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
++|+++|..++.||.+++.|++
T Consensus 15 ~eL~~~l~elk~eLf~LR~q~~ 36 (69)
T PRK14549 15 EEREEKLEELKLELLKERAQAA 36 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554443
No 109
>PRK11677 hypothetical protein; Provisional
Probab=23.83 E-value=89 Score=25.76 Aligned_cols=25 Identities=32% Similarity=0.223 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcch
Q 045080 127 KQVIKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 127 ~qi~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
++...|+.||..++.||..|+.+-+
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~ 53 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELV 53 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888887775443
No 110
>PRK15396 murein lipoprotein; Provisional
Probab=23.78 E-value=1e+02 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
-|-+|+.+++.|..+...++.+...++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777777777777776666665443
No 111
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=23.75 E-value=95 Score=22.11 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 045080 131 KLQAELAKAQAETVSMQCQR 150 (203)
Q Consensus 131 ~lq~eLa~aq~eL~~~q~q~ 150 (203)
+|+.+|..++.||.+++.|.
T Consensus 13 eL~~~l~~lkkeL~~lR~~~ 32 (66)
T PRK00306 13 ELNEKLLELKKELFNLRFQK 32 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555544443
No 112
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.75 E-value=1.6e+02 Score=22.21 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
-..|..|..++..++.++...+.+|..
T Consensus 76 e~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 76 ELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 113
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=23.63 E-value=1.4e+02 Score=23.56 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~e 142 (203)
+++|..||+.||++|..+..+
T Consensus 4 ~s~I~~eIekLqe~lk~~e~k 24 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETK 24 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888887765544
No 114
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.39 E-value=1.6e+02 Score=24.81 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH
Q 045080 123 SQLQKQVIKLQAELAKAQAETVSMQCQRDNLVAL 156 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~ 156 (203)
.++|.+++.++.+|..-|.||..+=.+-|.|+--
T Consensus 37 ~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlkt 70 (138)
T COG3105 37 QKLQYELEKVKAQLDEYRQELVKHFARSAELLKT 70 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888776666666643
No 115
>PRK14141 heat shock protein GrpE; Provisional
Probab=23.35 E-value=1.2e+02 Score=26.61 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
.|..|+.++.+++..+.++++++.|++.
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RK 66 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRK 66 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888998888888889998887654
No 116
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.27 E-value=1.2e+02 Score=27.47 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=37.4
Q ss_pred CchhHHHHHHHHhhccccCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 95 QRSDAVSSMVYEANARIRNP-VHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 95 ~R~dA~~SLvYEA~aR~rDP-VyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
.=..++++++-+++..+.+= .--.-..+..|++|+.+++.+|..++.+|..+|.++..
T Consensus 144 ~A~~ian~l~~~~~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 144 EAQKINQRLLKEGERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33556666644333332220 00024567789999999999999999999988776543
No 117
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=23.13 E-value=56 Score=29.37 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAK 138 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~ 138 (203)
|..++.||++||.+|..
T Consensus 57 L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 57 LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44445555555554433
No 118
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=22.85 E-value=1.5e+02 Score=25.60 Aligned_cols=27 Identities=4% Similarity=0.287 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
+.-|..++++|.+++.||..++.++..
T Consensus 161 ~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 161 VEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 119
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=22.83 E-value=1.5e+02 Score=23.66 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
|..|+.++.+++.++..+++++.++
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~ 44 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENY 44 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666666666666666655543
No 120
>PRK10963 hypothetical protein; Provisional
Probab=22.60 E-value=1.3e+02 Score=25.94 Aligned_cols=54 Identities=19% Similarity=0.365 Sum_probs=36.4
Q ss_pred hhHHHHhhCCCC--CCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 82 SNIIKCLQGLPE--CQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 82 sNI~kmLq~lp~--~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
..|...|++=|. .++.+.+. ..++-.|..| .|+-.++|++.|++++...+.+|.
T Consensus 6 ~~V~~yL~~~PdFf~~h~~Ll~------~L~lph~~~g---aVSL~ErQ~~~LR~r~~~Le~~l~ 61 (223)
T PRK10963 6 RAVVDYLLQNPDFFIRNARLVE------QMRVPHPVRG---TVSLVEWQMARQRNHIHVLEEEMT 61 (223)
T ss_pred HHHHHHHHHCchHHhhCHHHHH------hccCCCCCCC---eecHHHHHHHHHHHHHHHHHHHHH
Confidence 356666776664 46677776 3466777555 677777788777777777776665
No 121
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=22.51 E-value=94 Score=23.89 Aligned_cols=19 Identities=42% Similarity=0.529 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045080 124 QLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 124 ~Lq~qi~~lq~eLa~aq~e 142 (203)
.|+.+|.+++.||-.++.+
T Consensus 12 EL~e~L~elkkELf~LR~q 30 (87)
T PRK00461 12 ELEKLVIELKAELFTLRFK 30 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555533
No 122
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.38 E-value=1.8e+02 Score=24.44 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=19.6
Q ss_pred hHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 98 DAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 98 dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
.++++-+-++--++.||. ..|.+.|.+++.+|..++..++
T Consensus 8 ~~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a 47 (221)
T PF04012_consen 8 TLVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALA 47 (221)
T ss_pred HHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666665 3344444444444444443333
No 123
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.37 E-value=98 Score=28.23 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQR 150 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~ 150 (203)
.|-.|++||..++.+++.++- +..+|.|.
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~ 85 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEELRG-IQELQYQN 85 (262)
T ss_pred ccHHHHHHHHHHHhhHHHHHh-HHHHHHHH
Confidence 467889999999998888885 44444444
No 124
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=22.32 E-value=2.8e+02 Score=20.54 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 123 SQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
-.|..++.+|+.||-..+.+++.-|..
T Consensus 14 eeL~~~l~eLK~ELf~LR~q~a~g~l~ 40 (69)
T COG0255 14 EELEEELRELKKELFNLRFQLATGQLE 40 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456677777777777777766654444
No 125
>PRK14147 heat shock protein GrpE; Provisional
Probab=22.30 E-value=1.4e+02 Score=25.28 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
-|-.|+.++.+++..+.++++++.|++-
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rk 53 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRK 53 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888877654
No 126
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=22.20 E-value=1.4e+02 Score=23.06 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
-+..+.+|.+++|.++..+|.||.........
T Consensus 6 n~~~m~kqaq~mQ~k~~~~q~eL~~~~v~g~s 37 (102)
T TIGR00103 6 NLGELMKQAQQMQEKMKKLQEEIAQFEVTGKS 37 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccEEEEEE
Confidence 47788889999999999999999987765544
No 127
>PRK03762 hypothetical protein; Provisional
Probab=22.07 E-value=1.3e+02 Score=23.57 Aligned_cols=31 Identities=13% Similarity=0.223 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
+..+.++.+..|.++..+|++|.+.......
T Consensus 7 ~~~m~kqaqkmQ~km~~~Q~el~~~~v~g~s 37 (103)
T PRK03762 7 FSKLGEMLEQMQKKAKQLEEENANKEFTAKS 37 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccEEEEEE
Confidence 4567777888999999999999876544433
No 128
>PRK14629 hypothetical protein; Provisional
Probab=21.97 E-value=1.3e+02 Score=23.62 Aligned_cols=29 Identities=7% Similarity=0.140 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 124 QLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 124 ~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
++.+|.+++|.++..+|++|+........
T Consensus 7 ~~mkqaq~mQ~km~~~Q~eL~~~~veg~a 35 (99)
T PRK14629 7 DFLKNMSSFKDNIDNIKKEISQIVVCGRA 35 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccEEEEEe
Confidence 57888899999999999999986655443
No 129
>PRK09039 hypothetical protein; Validated
Probab=21.86 E-value=1.8e+02 Score=26.93 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
.-|..|+.|+..++++|+.++.+..
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~ 168 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDR 168 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444333
No 130
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.84 E-value=1.3e+02 Score=21.26 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
|..|+.++..++.++..++..|.
T Consensus 6 ~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 6 IERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555555555555555555554
No 131
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=21.79 E-value=53 Score=24.12 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=23.1
Q ss_pred hHHHHhhCC--CCCCchhHHHHHHHHhh
Q 045080 83 NIIKCLQGL--PECQRSDAVSSMVYEAN 108 (203)
Q Consensus 83 NI~kmLq~l--p~~~R~dA~~SLvYEA~ 108 (203)
.|.++|+.+ |.+.|...+..++.||.
T Consensus 24 ~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 24 KIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 788899987 78899999999999995
No 132
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=21.59 E-value=2.1e+02 Score=22.42 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALIC 158 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~~ 158 (203)
..|..|+.++..++..=..+..+|..+..|+..|-.++-
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~ 95 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLD 95 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777778888889999988877653
No 133
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.35 E-value=2.4e+02 Score=21.72 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~e 142 (203)
+-.|.-||-+|++|+.+-..+..+
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666554444433
No 134
>PRK14155 heat shock protein GrpE; Provisional
Probab=21.27 E-value=1.4e+02 Score=26.09 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
...|..|+.++.+++..+.++++++.|++-
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RK 48 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKR 48 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888887653
No 135
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=20.96 E-value=1.9e+02 Score=26.06 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhhcchhhHHHHH
Q 045080 123 SQLQKQVIKLQAELAKAQAETVS----MQCQRDNLVALIC 158 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~~----~q~q~~n~~~~~~ 158 (203)
..|+++.++|+.|++.+++++.. ++...+.|-.++.
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667788888888776555543 4455555555543
No 136
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=20.72 E-value=1.7e+02 Score=23.26 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
+..|+..+..|+.+++.++.++...+.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~ 94 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEE 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555544333
No 137
>PRK14164 heat shock protein GrpE; Provisional
Probab=20.69 E-value=1.9e+02 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045080 118 CAGAISQLQKQVIKLQAELAKAQAETVSMQCQR 150 (203)
Q Consensus 118 CvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~ 150 (203)
--+.|..|+.++.+++..+.+++++..|++..-
T Consensus 75 ~~~~~~~le~el~el~d~llR~~AE~eN~RkR~ 107 (218)
T PRK14164 75 DDGEASTVEAQLAERTEDLQRVTAEYANYRRRT 107 (218)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448899999999999999999999998876543
No 138
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=20.64 E-value=1.8e+02 Score=23.92 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 123 SQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
.+|+.++..-..|+..++.+|......
T Consensus 97 ~kLe~e~~~Kdsei~~Lr~~L~~~~~~ 123 (131)
T PF04859_consen 97 KKLEAELRAKDSEIDRLREKLDELNRA 123 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555444333
No 139
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.48 E-value=1.5e+02 Score=25.80 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 118 CAGAISQLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 118 CvG~I~~Lq~qi~~lq~eLa~aq~e 142 (203)
..=.+-.|++|+..++++|+.++++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3334455666666666655555443
No 140
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=20.42 E-value=59 Score=25.52 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=28.3
Q ss_pred hhHHhhhcCCC-CCCCCcCCCCCCccchhhhhhhhchhhHHHHhhC
Q 045080 46 ACKSLRRRCDE-KCVLAPYFPPTEPQNFIIVHRVFGASNIIKCLQG 90 (203)
Q Consensus 46 ACK~lRRrC~~-~CilAPYFP~d~~~~F~~vhkvFG~sNI~kmLq~ 90 (203)
.+.-+|+.++. -..+.||||..++.|= .-...+.+.-+.+||+.
T Consensus 70 ~i~a~r~~~a~~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~~ 114 (116)
T PF13793_consen 70 LIDALRRAGAKRITLVIPYLPYARQDRR-KPGEPISAKVVAKLLSA 114 (116)
T ss_dssp HHHHHHHTTBSEEEEEESS-TTTTSSSS-STTC--HHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEeccchhhhhhccC-CCCCcchHHHHHHHHHh
Confidence 34445665553 4778999999887664 55677777788888764
No 141
>PRK00153 hypothetical protein; Validated
Probab=20.34 E-value=1.4e+02 Score=22.81 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
=+..+.+|.+++|.++..+|.+|........+
T Consensus 4 ~~~~m~~qaq~~q~~~~~~q~~l~~~~~~~~s 35 (104)
T PRK00153 4 NMQNLMKQAQQMQEKMQKMQEELAQMEVEGEA 35 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccEEEEEE
Confidence 36788899999999999999999987655544
No 142
>PRK14621 hypothetical protein; Provisional
Probab=20.32 E-value=1.5e+02 Score=23.57 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
-+..+.+|.++.|.++..+|.+|+.....
T Consensus 5 nm~~mmkqaq~mQ~km~~~Q~eL~~~~v~ 33 (111)
T PRK14621 5 NLGDMMKQIQQAGEKMQDVQKQLEKLVAH 33 (111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccEEE
Confidence 37788899999999999999999876544
No 143
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.29 E-value=98 Score=23.34 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=44.1
Q ss_pred HHHHHHhhccccCCCCccHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHH
Q 045080 101 SSMVYEANARIRNPVHGCAG-----------AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVAL 156 (203)
Q Consensus 101 ~SLvYEA~aR~rDPVyGCvG-----------~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~ 156 (203)
.+++..|.....|.|+=-+| .+..|+++++.++.++...+.++...+.+...+...
T Consensus 57 ~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 57 AGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred CceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666676667777887777 788999999999999999998888887777766543
No 144
>PRK14156 heat shock protein GrpE; Provisional
Probab=20.27 E-value=1.8e+02 Score=24.92 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
-|-.|+.++.+++..+.++++++.|++.-
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~rKR 63 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQRR 63 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999998899888876543
No 145
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=20.23 E-value=63 Score=20.59 Aligned_cols=14 Identities=29% Similarity=0.987 Sum_probs=10.2
Q ss_pred CChhhHHhhhcCCC
Q 045080 43 PCAACKSLRRRCDE 56 (203)
Q Consensus 43 ~CAACK~lRRrC~~ 56 (203)
+|..|+..+.||..
T Consensus 2 aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 2 ACDRCRRRKVKCDG 15 (40)
T ss_dssp SBHHHHHHTS--ST
T ss_pred cChHHHhhCcCcCC
Confidence 78899999888876
No 146
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=20.01 E-value=1.8e+02 Score=24.87 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
+.|..|+.|+.+++..+.++++++.+++-
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rk 71 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRK 71 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999998888899998887653
Done!