Query 045080
Match_columns 203
No_of_seqs 139 out of 314
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045080.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045080hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 82.3 1.8 6E-05 27.0 3.8 28 120-147 2-29 (33)
2 2er8_A Regulatory protein Leu3 77.5 3.6 0.00012 27.6 4.5 21 120-140 49-69 (72)
3 1nkp_B MAX protein, MYC proto- 68.5 6.7 0.00023 27.7 4.3 34 118-151 45-78 (83)
4 2xdj_A Uncharacterized protein 61.3 12 0.00041 27.4 4.6 33 121-153 21-53 (83)
5 3dzy_D Peroxisome proliferator 60.2 5.7 0.00019 35.7 3.2 24 37-60 63-96 (419)
6 2wt7_A Proto-oncogene protein 60.0 17 0.00056 24.8 4.9 37 121-157 24-60 (63)
7 3ra3_B P2F; coiled coil domain 59.9 9.8 0.00033 22.9 3.2 25 122-146 2-26 (28)
8 1am9_A Srebp-1A, protein (ster 59.7 13 0.00046 26.4 4.5 28 119-146 49-76 (82)
9 1zme_C Proline utilization tra 57.4 11 0.00036 24.9 3.5 26 119-144 43-68 (70)
10 1uuj_A Platelet-activating fac 54.0 5.4 0.00018 29.8 1.6 24 122-145 60-83 (88)
11 3nmd_A CGMP dependent protein 53.0 21 0.00072 25.8 4.6 26 121-146 41-66 (72)
12 4e61_A Protein BIM1; EB1-like 51.2 22 0.00075 27.4 4.7 36 117-152 1-36 (106)
13 1t2k_D Cyclic-AMP-dependent tr 50.7 35 0.0012 22.8 5.2 35 121-155 23-57 (61)
14 3uul_A Utrophin; spectrin repe 47.4 49 0.0017 22.9 5.8 51 104-154 18-70 (118)
15 3uun_A Dystrophin; triple heli 46.7 41 0.0014 23.2 5.3 45 111-155 27-71 (119)
16 2dgc_A Protein (GCN4); basic d 46.0 33 0.0011 23.6 4.6 30 120-149 30-59 (63)
17 2yy0_A C-MYC-binding protein; 45.7 23 0.00078 23.8 3.6 25 122-146 21-45 (53)
18 1gk6_A Vimentin; intermediate 44.9 33 0.0011 23.2 4.4 32 123-154 3-34 (59)
19 1hlo_A Protein (transcription 43.8 22 0.00075 24.9 3.5 24 119-142 56-79 (80)
20 2zvf_A Alanyl-tRNA synthetase; 43.8 62 0.0021 24.7 6.4 46 102-147 14-59 (171)
21 1jnm_A Proto-oncogene C-JUN; B 43.6 33 0.0011 23.1 4.2 35 120-154 22-56 (62)
22 2w6a_A ARF GTPase-activating p 42.1 42 0.0014 23.8 4.6 33 121-153 28-60 (63)
23 2l5g_B Putative uncharacterize 41.9 44 0.0015 22.0 4.4 31 124-154 6-36 (42)
24 1dh3_A Transcription factor CR 41.7 42 0.0014 22.4 4.4 28 121-148 23-50 (55)
25 1rtm_1 Mannose-binding protein 41.6 25 0.00085 25.9 3.7 21 122-142 6-26 (149)
26 1gk4_A Vimentin; intermediate 40.8 43 0.0015 23.8 4.7 34 121-154 27-60 (84)
27 3r4h_A Coiled coil helix CC-TE 40.6 39 0.0013 21.1 3.8 28 120-147 2-29 (34)
28 1x8y_A Lamin A/C; structural p 40.5 44 0.0015 24.0 4.7 47 101-154 16-62 (86)
29 2z5i_A TM, general control pro 40.2 41 0.0014 22.5 4.2 28 120-147 12-39 (52)
30 2xv5_A Lamin-A/C; structural p 40.0 57 0.0019 23.2 5.2 35 121-155 6-40 (74)
31 1nlw_A MAD protein, MAX dimeri 39.2 41 0.0014 23.9 4.4 31 119-149 46-76 (80)
32 2xdj_A Uncharacterized protein 39.2 47 0.0016 24.1 4.7 36 119-154 26-61 (83)
33 3twe_A Alpha4H; unknown functi 37.0 42 0.0014 19.9 3.4 22 123-144 4-25 (27)
34 1gd2_E Transcription factor PA 35.9 67 0.0023 22.7 5.0 34 120-153 29-62 (70)
35 2yy0_A C-MYC-binding protein; 35.3 53 0.0018 22.0 4.1 24 122-145 28-51 (53)
36 1zxa_A CGMP-dependent protein 34.0 56 0.0019 23.2 4.3 25 122-146 27-51 (67)
37 3myf_A Sensor protein; HPT, hi 33.8 81 0.0028 23.3 5.4 59 72-138 53-111 (119)
38 3mud_A DNA repair protein XRCC 33.6 50 0.0017 27.4 4.5 47 92-149 118-164 (175)
39 1ci6_A Transcription factor AT 33.5 78 0.0027 21.5 4.9 36 122-157 25-60 (63)
40 3pbf_A Pulmonary surfactant-as 33.4 31 0.0011 25.1 3.0 24 121-144 3-26 (148)
41 3mov_A Lamin-B1; LMNB1, B-type 33.0 65 0.0022 23.8 4.7 50 98-154 22-71 (95)
42 3tnu_B Keratin, type II cytosk 32.9 62 0.0021 24.5 4.7 34 121-154 76-109 (129)
43 3tnu_A Keratin, type I cytoske 32.6 62 0.0021 24.6 4.7 35 121-155 78-112 (131)
44 2wg5_A General control protein 32.3 46 0.0016 24.8 3.8 29 122-150 9-37 (109)
45 1r73_A TM1492, 50S ribosomal p 31.9 35 0.0012 23.6 2.9 21 131-151 13-33 (66)
46 1ic2_A Tropomyosin alpha chain 31.4 61 0.0021 22.8 4.2 27 120-146 41-67 (81)
47 3j21_W 50S ribosomal protein L 30.7 37 0.0013 24.0 2.9 22 130-151 12-33 (72)
48 3ol1_A Vimentin; structural ge 30.0 71 0.0024 24.1 4.6 30 120-149 20-49 (119)
49 3v2d_2 50S ribosomal protein L 29.8 39 0.0013 23.8 2.9 23 129-151 18-40 (72)
50 3l4f_A RHO guanine nucleotide 29.7 1.3E+02 0.0045 21.1 5.5 40 119-158 6-45 (61)
51 3azd_A Short alpha-tropomyosin 29.5 23 0.00078 22.2 1.4 27 121-147 5-31 (37)
52 1vq8_V 50S ribosomal protein L 29.3 40 0.0014 23.7 2.9 22 130-151 15-36 (71)
53 2k48_A Nucleoprotein; viral pr 29.2 72 0.0025 24.7 4.5 27 119-145 34-60 (107)
54 1buu_A Protein (mannose-bindin 29.2 40 0.0014 25.6 3.1 23 119-141 22-44 (168)
55 3w03_C DNA repair protein XRCC 29.0 64 0.0022 26.8 4.5 29 117-145 149-177 (184)
56 3r8s_Y 50S ribosomal protein L 28.6 34 0.0012 23.5 2.4 22 130-151 12-33 (63)
57 3bbp_D GRIP and coiled-coil do 28.5 96 0.0033 22.4 4.7 56 74-140 7-63 (71)
58 1ybx_A Conserved hypothetical 28.4 42 0.0014 26.8 3.1 38 120-157 41-78 (143)
59 2qdq_A Talin-1; dimerisation d 28.0 1E+02 0.0036 20.8 4.6 25 125-149 13-37 (50)
60 1t2k_D Cyclic-AMP-dependent tr 27.7 96 0.0033 20.6 4.5 28 120-147 29-56 (61)
61 4emc_A Monopolin complex subun 27.5 69 0.0024 27.0 4.4 21 125-145 39-59 (190)
62 3f31_A Spectrin alpha chain, b 27.0 71 0.0024 24.0 4.1 55 100-154 58-112 (149)
63 3e98_A GAF domain of unknown f 27.0 46 0.0016 28.1 3.4 53 83-144 35-89 (252)
64 1a93_B MAX protein, coiled coi 26.5 1E+02 0.0035 19.4 4.0 23 122-144 9-31 (34)
65 2ic6_A Nucleocapsid protein; h 26.3 76 0.0026 23.2 4.0 22 120-141 52-73 (78)
66 1nkp_B MAX protein, MYC proto- 26.0 84 0.0029 21.9 4.1 27 127-153 47-73 (83)
67 2k48_A Nucleoprotein; viral pr 26.0 72 0.0025 24.7 4.0 22 120-141 82-103 (107)
68 2zjr_V 50S ribosomal protein L 25.6 42 0.0014 23.3 2.4 21 124-144 13-33 (67)
69 3m91_A Proteasome-associated A 25.5 1E+02 0.0036 20.6 4.3 30 122-151 18-47 (51)
70 3kqg_A Langerin, C-type lectin 25.4 97 0.0033 23.2 4.7 25 120-144 16-40 (182)
71 3t97_C Nuclear pore glycoprote 25.4 1.3E+02 0.0043 21.0 4.8 38 121-158 13-50 (64)
72 1jnm_A Proto-oncogene C-JUN; B 24.7 1E+02 0.0036 20.5 4.2 29 119-147 28-56 (62)
73 1x4w_A Hypothetical protein FL 24.6 26 0.00089 24.9 1.1 15 34-48 8-22 (67)
74 1nkp_A C-MYC, MYC proto-oncoge 24.6 1.1E+02 0.0038 21.9 4.6 30 119-148 51-80 (88)
75 3edu_A Beta-I spectrin, spectr 24.5 43 0.0015 26.2 2.6 50 104-153 124-173 (218)
76 2lw1_A ABC transporter ATP-bin 24.4 82 0.0028 22.4 3.9 21 124-144 26-46 (89)
77 3i00_A HIP-I, huntingtin-inter 24.2 96 0.0033 23.9 4.4 33 121-153 41-73 (120)
78 3u1c_A Tropomyosin alpha-1 cha 24.2 92 0.0031 22.9 4.2 26 120-145 44-69 (101)
79 3swk_A Vimentin; cytoskeleton, 23.9 70 0.0024 23.1 3.4 26 122-147 2-27 (86)
80 3tnu_B Keratin, type II cytosk 23.9 1.3E+02 0.0046 22.6 5.2 26 118-143 34-59 (129)
81 3viq_B Mating-type switching p 23.7 90 0.0031 23.1 4.0 21 122-142 10-30 (85)
82 2w6a_A ARF GTPase-activating p 23.3 1E+02 0.0035 21.8 4.0 27 122-148 36-62 (63)
83 4ani_A Protein GRPE; chaperone 22.8 85 0.0029 26.4 4.2 29 120-148 66-94 (213)
84 3edv_A Spectrin beta chain, br 22.8 2E+02 0.0069 23.3 6.4 49 106-154 131-179 (323)
85 3v86_A De novo design helix; c 22.6 1.3E+02 0.0044 17.8 4.1 24 122-145 2-25 (27)
86 3cve_A Homer protein homolog 1 22.5 1.7E+02 0.0058 20.9 5.2 37 125-161 19-55 (72)
87 2ic9_A Nucleocapsid protein; h 22.4 96 0.0033 23.5 4.0 22 120-141 52-73 (96)
88 3ol1_A Vimentin; structural ge 22.0 91 0.0031 23.5 3.9 27 123-149 86-116 (119)
89 3lbx_A Spectrin alpha chain, e 21.8 92 0.0032 23.8 4.0 54 100-153 68-121 (161)
90 2ic6_A Nucleocapsid protein; h 21.8 94 0.0032 22.7 3.7 27 119-145 4-30 (78)
91 3viq_B Mating-type switching p 21.6 56 0.0019 24.2 2.5 30 123-152 4-33 (85)
92 3s4r_A Vimentin; alpha-helix, 21.2 1.3E+02 0.0046 21.8 4.5 26 121-146 57-82 (93)
93 2wt7_B Transcription factor MA 21.0 1.3E+02 0.0045 22.3 4.5 44 96-144 29-72 (90)
94 3rrk_A V-type ATPase 116 kDa s 21.0 1.8E+02 0.0063 24.6 6.0 31 119-149 225-255 (357)
95 1yhn_B RILP, RAB interacting l 21.0 1.3E+02 0.0045 21.4 4.2 21 127-147 10-30 (65)
96 1kd8_B GABH BLL, GCN4 acid bas 20.8 1.6E+02 0.0055 18.7 4.2 26 122-147 3-28 (36)
97 2ic9_A Nucleocapsid protein; h 20.8 1.2E+02 0.0039 23.1 4.1 25 120-144 5-29 (96)
98 3cvf_A Homer-3, homer protein 20.7 1.9E+02 0.0064 21.0 5.2 36 125-160 25-60 (79)
99 1jcd_A Major outer membrane li 20.5 1.4E+02 0.0049 20.0 4.2 21 123-143 14-34 (52)
100 3he5_B Synzip2; heterodimeric 20.4 98 0.0034 20.8 3.3 20 125-144 29-48 (52)
101 1j8b_A YBAB; hypothetical prot 20.1 71 0.0024 24.1 2.9 37 121-157 9-45 (112)
102 1u5p_A Spectrin alpha chain, b 20.0 2.1E+02 0.0071 21.8 5.6 43 112-154 134-176 (216)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=82.26 E-value=1.8 Score=27.02 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
|.|..|+++|..|+.|++.++-|++.++
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999998887653
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=77.46 E-value=3.6 Score=27.58 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQ 140 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq 140 (203)
+.|..|+.+|+.|+..|..++
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677778888888877776543
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=68.51 E-value=6.7 Score=27.69 Aligned_cols=34 Identities=9% Similarity=0.134 Sum_probs=26.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 045080 118 CAGAISQLQKQVIKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 118 CvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
.+-.|..|+.++..++.++..++.+...++.+-.
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999998888888777665543
No 4
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=61.25 E-value=12 Score=27.36 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
.+..|++||+.++.|++.++.++...+.+-..+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456777777777777777776666544444433
No 5
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=60.23 E-value=5.7 Score=35.67 Aligned_cols=24 Identities=38% Similarity=0.870 Sum_probs=15.9
Q ss_pred CCccCCCChhhHHh-hh---------cCCCCCCC
Q 045080 37 PPIVLSPCAACKSL-RR---------RCDEKCVL 60 (203)
Q Consensus 37 ~~~~~~~CAACK~l-RR---------rC~~~Cil 60 (203)
-+--+..|.|||.. || +|..+|.+
T Consensus 63 ~hygv~~C~~C~~FFrR~~~~~~~~~~c~~~C~~ 96 (419)
T 3dzy_D 63 FHYGVHACEGCKGFFRRTIRLKLIYDRCDLNCRI 96 (419)
T ss_dssp BCSSSBCCHHHHHHHHHHHTTTCCCCCCCSCCCC
T ss_pred CccCcccchhhhHHHccchhcccccccccCCCCc
Confidence 34456789999932 22 58778865
No 6
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=60.02 E-value=17 Score=24.78 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALI 157 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~ 157 (203)
.|..|+.++..|+.+-..++.++..++.+-..|-.++
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888888888888888888877777766554
No 7
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=59.92 E-value=9.8 Score=22.90 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
|..|+++..+|+.|++.+.-|++.+
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888889999998888888764
No 8
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=59.67 E-value=13 Score=26.39 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
+-.|..|+.++..|+.|+..++.++...
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5778999999999999998888877653
No 9
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=57.39 E-value=11 Score=24.92 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
-+.|..|+.+|..|+.+|+.++..|+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999988887664
No 10
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=53.99 E-value=5.4 Score=29.84 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
|-.||++|.+|+++++.+++||..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999988864
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.96 E-value=21 Score=25.82 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
.|..|+.+|++..+++..+|.+|-.+
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555444
No 12
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=51.18 E-value=22 Score=27.40 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 117 GCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 117 GCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
|..|.+..|+.++...+++++.++.++..++.+-..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888777765544433
No 13
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=50.67 E-value=35 Score=22.83 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
.|..|+.++..|..+...++.++..++.+...|-.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777776666555543
No 14
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=47.38 E-value=49 Score=22.94 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=39.9
Q ss_pred HHHhhcc--ccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 104 VYEANAR--IRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 104 vYEA~aR--~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
+-|+..+ ..+||++-...|..+..+...++.+|..-+..+..+......|+
T Consensus 18 L~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~ 70 (118)
T 3uul_A 18 LLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLM 70 (118)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433 45899999999999999999999999998888887766666654
No 15
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=46.74 E-value=41 Score=23.24 Aligned_cols=45 Identities=7% Similarity=0.041 Sum_probs=37.8
Q ss_pred ccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 111 IRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 111 ~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
..+||++-+..|..+..+...++.+|..-+..+..+......|+.
T Consensus 27 ~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~ 71 (119)
T 3uun_A 27 AQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIG 71 (119)
T ss_dssp HHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999988888877766666653
No 16
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=46.01 E-value=33 Score=23.56 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
..|..|+.++..|+.+...++.++..++.+
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888887776543
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.65 E-value=23 Score=23.81 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
+-.|+.++.+|++++..++.++..+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444433
No 18
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=44.92 E-value=33 Score=23.17 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 123 SQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
..++.+|..++++|..++++++........|+
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~Ll 34 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLL 34 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888887776543333343
No 19
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.79 E-value=22 Score=24.92 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~e 142 (203)
+..|..|+.++..|+.++..++.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 556788888888887777766543
No 20
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=43.76 E-value=62 Score=24.74 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=31.4
Q ss_pred HHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 102 SMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 102 SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
.++.+......-+..--...|..|+.++.+++.|+..++.+++..+
T Consensus 14 ~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 14 RLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444456677788888888888888888888877653
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.57 E-value=33 Score=23.08 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
..|..|+.++..|+.+-..++.++..++.+...|-
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777776666555543
No 22
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=42.12 E-value=42 Score=23.77 Aligned_cols=33 Identities=33% Similarity=0.317 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
.|.+|.+-.+.+..||...|.+|..+|.-+.+|
T Consensus 28 kiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 28 KVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 477788878888888888888888877666554
No 23
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=41.90 E-value=44 Score=22.02 Aligned_cols=31 Identities=10% Similarity=0.262 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 124 QLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 124 ~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
.|-++|+.+-.|+++++.+|..+|-..-.|-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888888776555443
No 24
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=41.69 E-value=42 Score=22.42 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
.|..|+.++..|+.|...++.++..++.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888887776653
No 25
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=41.64 E-value=25 Score=25.88 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~e 142 (203)
|..|+.+++.|+.+|..++..
T Consensus 6 l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 445555555555555555443
No 26
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=40.80 E-value=43 Score=23.83 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
.+..++..|..++++|..++.++...-.....|+
T Consensus 27 ~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 27 EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888776544444444
No 27
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=40.63 E-value=39 Score=21.06 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
|.+..+++++...+.||+..+-||+.++
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777766543
No 28
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=40.47 E-value=44 Score=24.02 Aligned_cols=47 Identities=11% Similarity=0.138 Sum_probs=30.1
Q ss_pred HHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 101 SSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 101 ~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
..-+-|+..|. ...+..++.+|..++++|+.++.++...-.....|+
T Consensus 16 e~~l~e~E~~~-------~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll 62 (86)
T 1x8y_A 16 EAKLRDLEDSL-------ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL 62 (86)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555542 235777888888888888888888776543334443
No 29
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=40.18 E-value=41 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
..|.+||..|++|+.+|...+.+...++
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~ 39 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAIS 39 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3578899999999998888777666554
No 30
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=40.00 E-value=57 Score=23.22 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
....++.+|..++++|..++++++........|+-
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Lln 40 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLD 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888888888888887765444444443
No 31
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=39.24 E-value=41 Score=23.95 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
+..|..|+.+...++.++..++.+...++.+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888887777776655433
No 32
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.24 E-value=47 Score=24.13 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
.+-|..|+.+|..|+.++.....+|..++.++..+-
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y 61 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIL 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999998887777654
No 33
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=37.02 E-value=42 Score=19.95 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045080 123 SQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
-.|..++++||+.|.+++.+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888889988888887663
No 34
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.91 E-value=67 Score=22.70 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
..|..|+.+|..|+.....+.+|...++.|...|
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888777777777766666655544
No 35
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=35.30 E-value=53 Score=21.98 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
+..|+.+++.|++++..++++|..
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666653
No 36
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=33.96 E-value=56 Score=23.18 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
|..|+..++.-.+++..++.+|..+
T Consensus 27 I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 27 IKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 37
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=33.80 E-value=81 Score=23.32 Aligned_cols=59 Identities=19% Similarity=0.303 Sum_probs=35.7
Q ss_pred hhhhhhhhchhhHHHHhhCCCCCCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHH
Q 045080 72 FIIVHRVFGASNIIKCLQGLPECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAK 138 (203)
Q Consensus 72 F~~vhkvFG~sNI~kmLq~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~ 138 (203)
+..+||+-|++..+.. |. -...+...|..+|..+++-..-..+..|..+|..+..++..
T Consensus 53 ~~~aHkLkGaa~~~Ga----~~----L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~ 111 (119)
T 3myf_A 53 LSTIHKLHGASCYCGV----PT----TQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQ 111 (119)
T ss_dssp HHHHHHHHHHHTTTTC----HH----HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCH----HH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4668999888865532 11 11223345667777777766666666666666666555543
No 38
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=33.61 E-value=50 Score=27.41 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=36.8
Q ss_pred CCCCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 92 PECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 92 p~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
+.+.|.++++-|+=.| ...|..||.+|+.|+.+|...+.+-..++..
T Consensus 118 ~a~~paE~ireli~~A-----------ertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 118 KVENPAEVIRELICYC-----------LDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp ECSCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888887654 5678999999999999999888887776543
No 39
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.48 E-value=78 Score=21.47 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALI 157 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~ 157 (203)
+..|+.++..|+.+-..++.++..++.....|-.++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666655555554443
No 40
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=33.44 E-value=31 Score=25.07 Aligned_cols=24 Identities=8% Similarity=0.167 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
++..|++++..|+.+|..++..|.
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888887764
No 41
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=33.03 E-value=65 Score=23.78 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 98 DAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 98 dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
+....-+-|.+.|.. -.+..++..|..++++|..++.+++..-.....|+
T Consensus 22 ~~LE~~l~e~E~~~~-------~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 71 (95)
T 3mov_A 22 RACLERIQELEDLLA-------KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLL 71 (95)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666532 24566777777777777777777766433333444
No 42
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.86 E-value=62 Score=24.48 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
.+..++.+|..++++|..++.+++..-.....|+
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Ll 109 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELM 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666665433333343
No 43
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.58 E-value=62 Score=24.57 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVA 155 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~ 155 (203)
.+..++..|..++++|..++.+++..-.....|+-
T Consensus 78 ~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~ 112 (131)
T 3tnu_A 78 QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777776654433344443
No 44
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=32.34 E-value=46 Score=24.82 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQR 150 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~ 150 (203)
..+|+.+++.++.|+..++.||..++...
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46799999999999999999999887543
No 45
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=31.95 E-value=35 Score=23.63 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhcch
Q 045080 131 KLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 131 ~lq~eLa~aq~eL~~~q~q~~ 151 (203)
+|+.+|..++.||.+++.|.+
T Consensus 13 EL~~~l~elk~ELf~LR~q~a 33 (66)
T 1r73_A 13 ELKNLLEEKKRQLMELRFQLA 33 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544443
No 46
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=31.40 E-value=61 Score=22.78 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
.-|..|+++|..++.+|..+..+|...
T Consensus 41 ~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 41 DELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888877777654
No 47
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.69 E-value=37 Score=23.97 Aligned_cols=22 Identities=5% Similarity=0.042 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcch
Q 045080 130 IKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 130 ~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
++|+.+|..++.||.+++.|.+
T Consensus 12 ~EL~~~L~elk~ELf~LR~q~a 33 (72)
T 3j21_W 12 EEIDAKIRELRLQLAKERGLLT 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655554
No 48
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=30.03 E-value=71 Score=24.11 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
+.|..|++||..+..+-+.+..++.+++..
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~ 49 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAED 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888888777777777766665443
No 49
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=29.79 E-value=39 Score=23.84 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcch
Q 045080 129 VIKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 129 i~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
.++|+.+|..++.||.+++.|++
T Consensus 18 ~eEL~~~L~elk~ELf~LR~q~a 40 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRFQAS 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666554
No 50
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=29.74 E-value=1.3e+02 Score=21.10 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALIC 158 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~~ 158 (203)
+-.+..|..++++|+.+....+.-+...|.+..-|=.+++
T Consensus 6 VDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vr 45 (61)
T 3l4f_A 6 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999999888888888888877777
No 51
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=29.54 E-value=23 Score=22.24 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
.|..|+.+|..++.++..++.++...+
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888877776654
No 52
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=29.30 E-value=40 Score=23.66 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcch
Q 045080 130 IKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 130 ~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
++|+.+|..++.||.+++.|.+
T Consensus 15 ~EL~~~l~elk~ELf~LR~q~a 36 (71)
T 1vq8_V 15 AEREAELDDLKTELLNARAVQA 36 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666555544
No 53
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=29.17 E-value=72 Score=24.69 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
.+-|..||.+|...+.||..|+.+|..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkd 60 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKD 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999998874
No 54
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=29.17 E-value=40 Score=25.56 Aligned_cols=23 Identities=9% Similarity=0.258 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQA 141 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~ 141 (203)
-..|..|+.+|..|+.+|..++.
T Consensus 22 ~~~l~~L~~~~~~L~~~l~~l~~ 44 (168)
T 1buu_A 22 EVKLANMEAEINTLKSKLELTNK 44 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34466666666666666666554
No 55
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=28.97 E-value=64 Score=26.79 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=14.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 117 GCAGAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 117 GCvG~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
.|++.|..|+.++..|+.|..+++.|...
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544443
No 56
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=28.64 E-value=34 Score=23.45 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcch
Q 045080 130 IKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 130 ~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
++|+.+|..++.||.+++.|.+
T Consensus 12 ~EL~~~l~elk~Elf~LR~q~a 33 (63)
T 3r8s_Y 12 EELNTELLNLLREQFNLRMQAA 33 (63)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555543
No 57
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=28.50 E-value=96 Score=22.42 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=27.6
Q ss_pred hhhhhhchhhHHHHhhCCC-CCCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Q 045080 74 IVHRVFGASNIIKCLQGLP-ECQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQ 140 (203)
Q Consensus 74 ~vhkvFG~sNI~kmLq~lp-~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq 140 (203)
++|.+|-..+.-.+.+.|. ..++.+-+++|+.|+.+- ...|..|+..|+.||.+..
T Consensus 7 ~~~~w~~~~s~eel~~~L~~~~k~~~Hl~~LL~EsEat-----------narL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 7 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEAT-----------NAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp ----------------------CTTSHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccCCHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHH
Confidence 4566666666677777775 447889999999998763 3448888888888887653
No 58
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=28.37 E-value=42 Score=26.83 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALI 157 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~ 157 (203)
|-+..+.+|.++.|+++.++|+||++...-...--+++
T Consensus 41 gnm~~mmkQAQkmQ~km~k~QeeL~~~eveg~sGgGlV 78 (143)
T 1ybx_A 41 GNINNLVKQAQKMQRDMERVQEELKEKTVEASAGGGAV 78 (143)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHCEEEEEETTTTE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCEEEEEECCCEE
Confidence 35889999999999999999999998776554433333
No 59
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=28.03 E-value=1e+02 Score=20.83 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 125 LQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 125 Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
-|..|-..+.||..|+..|+.++.+
T Consensus 13 Aqe~iLr~ErELEeAr~~La~iR~~ 37 (50)
T 2qdq_A 13 AQEEMLRKERELEEARKKLAQIRQQ 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556777888888888876543
No 60
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.66 E-value=96 Score=20.57 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
+-+..|..+...|+.++..++.|+..+.
T Consensus 29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 29 KKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777666554
No 61
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=27.55 E-value=69 Score=26.97 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 125 LQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 125 Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
.+.+|..|+.+|+.++++...
T Consensus 39 k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 39 KATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 334444455555555554443
No 62
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=26.97 E-value=71 Score=23.95 Aligned_cols=55 Identities=7% Similarity=0.045 Sum_probs=40.4
Q ss_pred HHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 100 VSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 100 ~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
+..-+.|...-+.|+.||-+..|..+.++.+.+++||..-+..+..+......|+
T Consensus 58 l~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li 112 (149)
T 3f31_A 58 LEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMI 112 (149)
T ss_dssp HHHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677888998888999999999999999887776666555444444
No 63
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=26.95 E-value=46 Score=28.06 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=17.5
Q ss_pred hHHHHhhCCCC--CCchhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 83 NIIKCLQGLPE--CQRSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 83 NI~kmLq~lp~--~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
.|...|++=|. .++.+.+..| ++-.|.. |+|+-.++|++.+++++..++.+|.
T Consensus 35 ~V~~yL~~~PdFf~~~~~Ll~~L------~lph~~~---~aVSL~erQ~~~LR~r~~~Le~~L~ 89 (252)
T 3e98_A 35 QVAAYLSQHPEFFVEHDELIPEL------RIPHQPG---DAVSLVERQVRLLRERNIEMRHRLS 89 (252)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHhhCHHHHHhC------CCCCCCC---CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555553 3455666544 5666763 6777778888888877777777664
No 64
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=26.50 E-value=1e+02 Score=19.40 Aligned_cols=23 Identities=13% Similarity=0.069 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
+...|+.|++|+.+-+.++.++-
T Consensus 9 n~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 9 NDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHhhHHHHHHHHHHHHHHHH
Confidence 45667777777777776666653
No 65
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=26.29 E-value=76 Score=23.22 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQA 141 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~ 141 (203)
+.|..|+.+|.+|+.+|+.+.+
T Consensus 52 ~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 52 AAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5677778887777777776554
No 66
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.05 E-value=84 Score=21.86 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 127 KQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 127 ~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
.-|..|+.++...+.++..++.+...|
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555554444444333
No 67
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.02 E-value=72 Score=24.68 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQA 141 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~ 141 (203)
++|..||.+|.+|+.+|+.+.+
T Consensus 82 ~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 82 AAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777765544
No 68
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=25.56 E-value=42 Score=23.29 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 124 QLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 124 ~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
.|+.++.+++.||-.++-+.+
T Consensus 13 EL~~~l~elk~ELf~LR~q~a 33 (67)
T 2zjr_V 13 DFAKEIDARKKELMELRFQAA 33 (67)
T ss_dssp HHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444
No 69
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.48 E-value=1e+02 Score=20.58 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQCQRD 151 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~ 151 (203)
+..|..+...|-+-|..++.||..++.|-.
T Consensus 18 l~~L~~rN~rL~~~L~~AR~el~~Lkeele 47 (51)
T 3m91_A 18 IDSLAARNSKLMETLKEARQQLLALREEVD 47 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667777888888887765543
No 70
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=25.44 E-value=97 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
..+..|+.+|+.|+.+|...+..|.
T Consensus 16 ~~~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 16 EKASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777766655543
No 71
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=25.38 E-value=1.3e+02 Score=20.95 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALIC 158 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~~ 158 (203)
.|..|...+..++.+=.++..+|..+..|+.-|-.++.
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~ 50 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLS 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888899999999998877764
No 72
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=24.69 E-value=1e+02 Score=20.50 Aligned_cols=29 Identities=10% Similarity=0.180 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
-+-+..|..+...|+.++..++.|+..+.
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888887777654
No 73
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.60 E-value=26 Score=24.94 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=10.0
Q ss_pred CCCCCccCCCChhhH
Q 045080 34 AAPPPIVLSPCAACK 48 (203)
Q Consensus 34 ~~~~~~~~~~CAACK 48 (203)
..++......|..||
T Consensus 8 ~~~~~~~~~rC~~C~ 22 (67)
T 1x4w_A 8 SRSKQKSRRRCFQCQ 22 (67)
T ss_dssp CCCSCSCTTBCSSSC
T ss_pred CccCCccCCcchhhC
Confidence 334455567899987
No 74
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.57 E-value=1.1e+02 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
+-.|..|+.+...++.++...+.+...++.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~ 80 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRREQLKH 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888887777776665555544433
No 75
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=24.54 E-value=43 Score=26.15 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=26.2
Q ss_pred HHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 104 VYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 104 vYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
+-|...-..+|+.+-...|..|+++.+.++.+|...+.++..++.....|
T Consensus 124 l~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L 173 (218)
T 3edu_A 124 IDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRL 173 (218)
T ss_dssp HHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555688888888999999999999999998888887765544444
No 76
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.43 E-value=82 Score=22.37 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 124 QLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 124 ~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
.|..+|..|+++++.++++|+
T Consensus 26 ~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444
No 77
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=24.21 E-value=96 Score=23.90 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
+|..|+.+|..|++||+..+.+.....-....|
T Consensus 41 ~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~L 73 (120)
T 3i00_A 41 VVLQLKGHVSELEADLAEQQHLRQQAADDCEFL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 78
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.16 E-value=92 Score=22.87 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
.-|..|+++|..++.+|..++..|..
T Consensus 44 ~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 44 DDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888777777777776654
No 79
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.93 E-value=70 Score=23.06 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
|..|++||..+..+-+.+..|+-+++
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~ 27 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLA 27 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45677777777777766666666554
No 80
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.89 E-value=1.3e+02 Score=22.57 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=14.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 118 CAGAISQLQKQVIKLQAELAKAQAET 143 (203)
Q Consensus 118 CvG~I~~Lq~qi~~lq~eLa~aq~eL 143 (203)
+=--|..|.++|+.|+.||..++...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~ 59 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQC 59 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33446666666666666665544433
No 81
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=23.75 E-value=90 Score=23.09 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAE 142 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~e 142 (203)
|..|+.++..|+.++..++++
T Consensus 10 i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443
No 82
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=23.32 E-value=1e+02 Score=21.77 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
=..|..++..+|.+|..+|.|-.+++.
T Consensus 36 N~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 36 NSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 356667777777777777777666554
No 83
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=22.77 E-value=85 Score=26.43 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETVSMQC 148 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~~~q~ 148 (203)
..|..|+.++..++.++.++++++.|++.
T Consensus 66 ~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 66 AQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777778888888877553
No 84
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=22.77 E-value=2e+02 Score=23.31 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=37.4
Q ss_pred HhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 106 EANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 106 EA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
|......+++.+-+..|..++++...++.+|...+..+..+......|+
T Consensus 131 ~k~~~l~~~~~~d~~~v~~l~~~h~~~~~~l~~~~~~v~~l~~~a~~L~ 179 (323)
T 3edv_A 131 DKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQ 179 (323)
T ss_dssp HHHHTCCCCCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445788888999999999999999999988887776665555544
No 85
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=22.61 E-value=1.3e+02 Score=17.83 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
+.+|+.++-+|+.|...++.|...
T Consensus 2 vyqlkdevgelkgevralkdevkd 25 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhc
Confidence 457888888888888888877654
No 86
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.54 E-value=1.7e+02 Score=20.90 Aligned_cols=37 Identities=19% Similarity=0.367 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhhh
Q 045080 125 LQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKEM 161 (203)
Q Consensus 125 Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~~~~~ 161 (203)
|+.+|..++.+|...|.+=...+..-.+++.++-.++
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI 55 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKI 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4555555555555554444444444444444444333
No 87
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=22.37 E-value=96 Score=23.54 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQA 141 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~ 141 (203)
++|..||.+|.+|+.+|+.+.+
T Consensus 52 ~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 52 AAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666555443
No 88
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.97 E-value=91 Score=23.51 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhhhc
Q 045080 123 SQLQKQVIKLQAELAKAQ----AETVSMQCQ 149 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq----~eL~~~q~q 149 (203)
..|+.+|+.|+.||...+ .|+..+|.|
T Consensus 86 ~dLE~~iesL~eEl~FLKk~heeEl~eLq~q 116 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKKLHEEEIQELQAQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777666554 255555544
No 89
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens} PDB: 1owa_A
Probab=21.83 E-value=92 Score=23.79 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=41.1
Q ss_pred HHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 045080 100 VSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNL 153 (203)
Q Consensus 100 ~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~ 153 (203)
+..=+.|...-+.|+.||-...|..+.++-+.+++||...+..+..+......|
T Consensus 68 l~~Wi~ek~~~a~~~~~~d~~~v~~ll~kH~afe~El~a~~~~~~~l~~~g~~L 121 (161)
T 3lbx_A 68 LGKWIMEKVNILTDKSYEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREER 121 (161)
T ss_dssp HHHHHHHHHHHHHTTSCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667788889999999999999999999998887777665544444
No 90
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.79 E-value=94 Score=22.74 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVS 145 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~ 145 (203)
.|-|..||.+|...+.+|..++.+|..
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLkd 30 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKD 30 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999988874
No 91
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.61 E-value=56 Score=24.20 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 045080 123 SQLQKQVIKLQAELAKAQAETVSMQCQRDN 152 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n 152 (203)
..|+..|..|+++++.+..++..+..+-++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 468889999999999999998887665443
No 92
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.19 E-value=1.3e+02 Score=21.83 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSM 146 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~ 146 (203)
.|..|+++|..+..+-+.+..++.++
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555443
No 93
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=21.05 E-value=1.3e+02 Score=22.27 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=23.0
Q ss_pred chhHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 96 RSDAVSSMVYEANARIRNPVHGCAGAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 96 R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
|.-..+-=.|-+++|.+= +-.+..|+.++..|+.|+..++.|+.
T Consensus 29 ~RRtlKNRgyAq~CR~Kr-----~~q~~~LE~e~~~L~~e~~~L~~e~~ 72 (90)
T 2wt7_B 29 KRRTLKNRGYAQSCRYKR-----VQQKHHLENEKTQLIQQVEQLKQEVS 72 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667888888652 33344444444444444444444443
No 94
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=21.04 E-value=1.8e+02 Score=24.58 Aligned_cols=31 Identities=13% Similarity=0.197 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045080 119 AGAISQLQKQVIKLQAELAKAQAETVSMQCQ 149 (203)
Q Consensus 119 vG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q 149 (203)
.-.|..|+.+|++++.+|..++.+|..+..+
T Consensus 225 ~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 225 GKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999998888888776555
No 95
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=20.98 E-value=1.3e+02 Score=21.35 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 045080 127 KQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 127 ~qi~~lq~eLa~aq~eL~~~q 147 (203)
++-++|++++-.++.||+.||
T Consensus 10 qERNELKa~vf~lqeEL~yY~ 30 (65)
T 1yhn_B 10 QERNELKAKVFLLKEELAYFQ 30 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344577777777777777766
No 96
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.84 E-value=1.6e+02 Score=18.72 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045080 122 ISQLQKQVIKLQAELAKAQAETVSMQ 147 (203)
Q Consensus 122 I~~Lq~qi~~lq~eLa~aq~eL~~~q 147 (203)
+.+|+-++++|..+...+++|.++++
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677777777776666666666554
No 97
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=20.79 E-value=1.2e+02 Score=23.09 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045080 120 GAISQLQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 120 G~I~~Lq~qi~~lq~eLa~aq~eL~ 144 (203)
+-|..||.+|...+.||..|+.+|.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLk 29 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLK 29 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888888877776
No 98
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.72 E-value=1.9e+02 Score=20.97 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHhh
Q 045080 125 LQKQVIKLQAELAKAQAETVSMQCQRDNLVALICKE 160 (203)
Q Consensus 125 Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~~~~ 160 (203)
|+.+|..++.+|...|.+=...+..-.+++.++-.+
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455555555555544444333333333444444433
No 99
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=20.50 E-value=1.4e+02 Score=20.00 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045080 123 SQLQKQVIKLQAELAKAQAET 143 (203)
Q Consensus 123 ~~Lq~qi~~lq~eLa~aq~eL 143 (203)
..|-.+|..|+.++..++.++
T Consensus 14 ~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 100
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.35 E-value=98 Score=20.76 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045080 125 LQKQVIKLQAELAKAQAETV 144 (203)
Q Consensus 125 Lq~qi~~lq~eLa~aq~eL~ 144 (203)
|+.-|..|+.|++.+.+|.+
T Consensus 29 lekiianlrdeiarleneva 48 (52)
T 3he5_B 29 LEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555554444
No 101
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=20.09 E-value=71 Score=24.06 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHH
Q 045080 121 AISQLQKQVIKLQAELAKAQAETVSMQCQRDNLVALI 157 (203)
Q Consensus 121 ~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~~~~ 157 (203)
-+..|.+|.++.|+++..+|+||+....-...--+++
T Consensus 9 nm~~mmkqaq~mQ~~m~~~QeeL~~~~v~g~sggG~V 45 (112)
T 1j8b_A 9 GLGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLV 45 (112)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccEEEEEECCCEE
Confidence 3556788999999999999999998765554433333
No 102
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=20.02 E-value=2.1e+02 Score=21.80 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=34.0
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhH
Q 045080 112 RNPVHGCAGAISQLQKQVIKLQAELAKAQAETVSMQCQRDNLV 154 (203)
Q Consensus 112 rDPVyGCvG~I~~Lq~qi~~lq~eLa~aq~eL~~~q~q~~n~~ 154 (203)
..++.+-+..|..|..+.+.++++|...+..+..+......|+
T Consensus 134 ~~~~g~dl~~v~~ll~kh~~~~~el~~~~~~i~~l~~~g~~L~ 176 (216)
T 1u5p_A 134 SEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLS 176 (216)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3567778999999999999999999988887777665555554
Done!