BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045083
(556 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 145/281 (51%), Gaps = 49/281 (17%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
+N K ++PLH+AA+ GHT + ++L+ N+ ++ + ++ TPLH
Sbjct: 43 SNVKVETPLHMAARAGHTEVAKYLL--QNKAKVNAKA--------------KDDQTPLHC 86
Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
A R+ ++VK+L++ A+P+++ +A T L++A G E V +L+ + A++
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETVLALLE---KEASQA 140
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVA 255
+ K + TPLH A + +V V ++L++ D H P +A +N TPL++AV + + +IV
Sbjct: 141 CMTK---KGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVK 196
Query: 256 EIL--QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE- 312
+L P S A TPLH A + V+VA+ L++ Y + N+E
Sbjct: 197 LLLPRGGSPHSPAWNGY--------TPLHIAAKQNQVEVARSLLQ------YGGSANAES 242
Query: 313 ----TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALH 349
TPL++AA G ++VA +L K + G T LH
Sbjct: 243 VQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLH 283
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 131/251 (52%), Gaps = 23/251 (9%)
Query: 133 TPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
TPLH A + + +VK L++ A P+VS N ET L+MA G E+ +LQN +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVAN 248
A+ ++ TPLH A R+ ++VK+L++ A+P++ +A TPL++A
Sbjct: 73 VNAKA------KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAARE 123
Query: 249 GSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSAN 308
G E V +L+ E++ M +K TPLH A + V VA++L+E D H P +A
Sbjct: 124 GHVETVLALLEK--EASQACMTKKGF----TPLHVAAKYGKVRVAELLLERDAH-PNAAG 176
Query: 309 RNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRG 368
+N TPL++A + ++ IV +L + SP +G T LH A ++ +L G
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 369 TFKPQEIQELS 379
+ + +Q ++
Sbjct: 237 SANAESVQGVT 247
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 96/347 (27%), Positives = 149/347 (42%), Gaps = 83/347 (23%)
Query: 78 ANAKGD-SPLHLAAKKGHTAIVEFLI---------VFANRQPIDLERGVESAARQILKMT 127
A AK D +PLH AA+ GHT +V+ L+ A P+ + E +L +
Sbjct: 75 AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA-AREGHVETVLALL 133
Query: 128 NEEQN---------TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSA 178
+E + TPLH A + V V ++L++ D H + +A +N T L++AV + +
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNL 192
Query: 179 EIVAEIL--QNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANR 236
+IV +L P S A TPLH A + +V+V + L++ Y +
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGY--------TPLHIAAKQNQVEVARSLLQ------YGGSA 238
Query: 237 NSE-----TPLYMAVANGSAEIVAEILQN------------CPESAARQ----------- 268
N+E TPL++A G AE+VA +L P Q
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 269 ----MLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET-----PLYMAA 319
M++ T TPLH A ++ + K L++ + A+ N++T PL+ AA
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ------HQADVNAKTKLGYSPLHQAA 352
Query: 320 ANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV---YTYPTDILERV 363
G IV +L+ SP DG T L A Y TD+L+ V
Sbjct: 353 QQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVV 399
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 106/245 (43%), Gaps = 38/245 (15%)
Query: 84 SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRS 143
SPLH AA+ GH I L V++ A + +E+Q TPL EA
Sbjct: 13 SPLHAAAEAGHVDICHML--------------VQAGAN--IDTCSEDQRTPLMEAAENNH 56
Query: 144 VDVVKILIKA----DPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEK 199
++ VK LIKA DP + T L++A G E+V +L N + +
Sbjct: 57 LEAVKYLIKAGALVDP-----KDAEGSTCLHLAAKKGHYEVVQYLLSN-----GQMDVNC 106
Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
++ TP+ A + VD+VK+L+ + N + L+ A +G +I AEIL
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEEN-ICLHWAAFSGCVDI-AEILL 164
Query: 260 NCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAA 319
AA+ L N ++PLH A R D + + D V N+ ETPL A+
Sbjct: 165 -----AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCAS 218
Query: 320 ANGSV 324
N V
Sbjct: 219 LNSQV 223
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 23/170 (13%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
+A+G + LHLAAKKGH +V++L+ S + + ++ TP+ A
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLL---------------SNGQMDVNCQDDGGWTPMIWA 118
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLE 198
+ VD+VK+L+ ++ N + L+ A +G +I AEIL AA+ L
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEEN-ICLHWAAFSGCVDI-AEILL-----AAKCDLH 171
Query: 199 KTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVAN 248
N ++PLH A R R D V + + D V N+ ETPL A N
Sbjct: 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLK-NKEGETPLQCASLN 220
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 14/228 (6%)
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAE 183
KM ++ + +PLH A VD+ +L++A ++ + + + T L A N E V
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKY 62
Query: 184 ILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLY 243
+++ A +++ + E +T LH A + +VV+ L+ + TP+
Sbjct: 63 LIK------AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 244 MAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHV 303
A ++V +L + R + E+N LH A VD+A+IL+ A +
Sbjct: 117 WATEYKHVDLVKLLLSKGSDINIR------DNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 304 PYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
++ N + ++PL++AA V L + + +G+T L A
Sbjct: 171 -HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 275 EEQN--TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQ 332
E QN +PLH A VD+ +L++A ++ + + + TPL AA N ++ V +++
Sbjct: 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIK 65
Query: 333 KCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
+ +G T LH A ++++ +L
Sbjct: 66 AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
TPLH A R ++VVK+L++A V + ++N TPL++A NG E+V +L+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK 325
A+ ++ TPLH A R ++V K+L+EA V + ++N TPL++AA NG ++
Sbjct: 63 AK------DKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLE 115
Query: 326 IVAKILQ 332
+V +L+
Sbjct: 116 VVKLLLE 122
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 23/145 (15%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLHLAA+ GH +V+ L LE G + A+ ++ TPLH A R
Sbjct: 2 GRTPLHLAARNGHLEVVKLL----------LEAGADVNAK------DKNGRTPLHLAARN 45
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN 201
++VVK+L++A V+ + ++N T L++A NG E+V +L+ A+ +
Sbjct: 46 GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK------D 98
Query: 202 EEQNTPLHEAVRLRRVDVVKILIKA 226
+ TPLH A R ++VVK+L++A
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 13/136 (9%)
Query: 164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL 223
N T L++A NG E+V +L+ A+ ++ TPLH A R ++VVK+L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLL 54
Query: 224 IKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHE 283
++A V + ++N TPL++A NG E+V +L+ + A+ ++ TPLH
Sbjct: 55 LEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHL 107
Query: 284 AVRLRSVDVAKILIEA 299
A R ++V K+L+EA
Sbjct: 108 AARNGHLEVVKLLLEA 123
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Query: 237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
N TPL++A NG E+V +L+ + A+ ++ TPLH A R ++V K+L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLL 54
Query: 297 IEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
+EA V + ++N TPL++AA NG +++V +L+ + +G+T LH A
Sbjct: 55 LEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 72/148 (48%), Gaps = 16/148 (10%)
Query: 208 LHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
L EA D VK L++ ADP+ +++ + TPL+ A NG EIV +L +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 64
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGS 323
A+ + + TPLH A ++ K+L+ ADP+ S R TPL+ AA NG
Sbjct: 65 AK------DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHYAAENGH 115
Query: 324 VKIVAKILQKCPSPAHEGPDGKTALHAA 351
+IV +L K P DG+T L A
Sbjct: 116 KEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 11/125 (8%)
Query: 242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--A 299
L A NG+ + V ++L+N + A ++ + TPLH A ++ K+L+ A
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNA------SDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDI 359
DP+ S R TPL+ AA NG +IV +L K P + DG+T LH A +I
Sbjct: 62 DPNAKDSDGR---TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI 118
Query: 360 LERVL 364
++ +L
Sbjct: 119 VKLLL 123
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 22/147 (14%)
Query: 112 LERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLL 169
LE G + A ++ + TPLH A ++VK+L+ ADP+ S R T L
Sbjct: 24 LENGADPNA------SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR---TPL 74
Query: 170 YMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--AD 227
+ A NG EIV +L A+ + + TPLH A ++VK+L+ AD
Sbjct: 75 HYAAENGHKEIVKLLLSKGADPNAK------DSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 228 PHVPYSANRNSETPLYMAVANGSAEIV 254
P+ +++ + TPL +A +G+ EIV
Sbjct: 129 PN---TSDSDGRTPLDLAREHGNEEIV 152
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 27/150 (18%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
+++ G +PLH AA+ GH IV+ L L +G + A+ + + TPLH
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLL----------LSKGADPNAK------DSDGRTPLHY 76
Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
A ++VK+L+ ADP+ S R T L+ A NG EIV +L
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGR---TPLHYAAENGHKEIVKLLLSKGADP---- 129
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK 225
++ + TPL A ++VK+L K
Sbjct: 130 --NTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 42/186 (22%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ ++L EAA G+ + +++ + + +D T LH H
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGH-------------- 49
Query: 61 XXFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE 117
++I+ L S NAK G +PLH AA+ GH IV+ L L +G +
Sbjct: 50 ----KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL----------LSKGAD 95
Query: 118 SAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVAN 175
A+ + + TPLH A ++VK+L+ ADP+ S S R T L +A +
Sbjct: 96 PNAK------DSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGR---TPLDLAREH 146
Query: 176 GSAEIV 181
G+ EIV
Sbjct: 147 GNEEIV 152
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 42/220 (19%)
Query: 84 SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRS 143
SP+H AA GH + LI + + + + +PLHEA
Sbjct: 61 SPMHEAAIHGHQLSLRNLI----------------SQGWAVNIITADHVSPLHEACLGGH 104
Query: 144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE 203
+ VKIL+K V+ + T L+ A +GS + V +LQ+ A+ Q +
Sbjct: 105 LSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQH---GASVQ----PESD 156
Query: 204 QNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE-----TPLYMAVANGSAEIVAEIL 258
+P+HEA R V+ V LI Y N + + TPLY+A N V ++L
Sbjct: 157 LASPIHEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYLACENQQRACVKKLL 210
Query: 259 QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
ES A + Q++PLH VR S ++A +L++
Sbjct: 211 ----ESGADV---NQGKGQDSPLHAVVRTASEELACLLMD 243
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 20/154 (12%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
+PLHEA + VKIL+K V + TPL+ A +GS + V +LQ+ A
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQH---GA 149
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAA 320
+ Q + +P+HEA R V+ LI Y N + + TPLY+A
Sbjct: 150 SVQ----PESDLASPIHEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYLACE 199
Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT 354
N V K+L+ + ++G + LHA V T
Sbjct: 200 NQQRACVKKLLES-GADVNQGKGQDSPLHAVVRT 232
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 26/105 (24%)
Query: 71 CPSLLFQANA----KGD--SPLHLAAKKGHTAIVEFLIVFANRQPID---------LERG 115
C +LL Q A + D SP+H AA++GH V LI + ID L
Sbjct: 140 CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN--IDHKISHLGTPLYLA 197
Query: 116 VESAARQILKMTNEE---------QNTPLHEAVRLRSVDVVKILI 151
E+ R +K E Q++PLH VR S ++ +L+
Sbjct: 198 CENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLM 242
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 12/146 (8%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA D VK L++ V +++ + +TPL++A NG E+V +L + A+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVK 325
+ + TPLH A +V K+L+ ADP+ + + + +TPL++AA NG +
Sbjct: 67 ------DSDGKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENGHKE 117
Query: 326 IVAKILQKCPSPAHEGPDGKTALHAA 351
+V +L + P DG+T L A
Sbjct: 118 VVKLLLSQGADPNTSDSDGRTPLDLA 143
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
+++ G +PLHLAA+ GH +V+ L L +G + A+ + + TPLH
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLL----------LSQGADPNAK------DSDGKTPLHL 76
Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
A +VVK+L+ ADP+ + + + +T L++A NG E+V +L
Sbjct: 77 AAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---- 129
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK 225
++ + TPL A +VVK+L K
Sbjct: 130 --NTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 20/160 (12%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA + D VK L++ V+ +++ + +T L++A NG E+V +L A+
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAE 252
+ + TPLH A +VVK+L+ ADP+ + + + +TPL++A NG E
Sbjct: 67 ------DSDGKTPLHLAAENGHKEVVKLLLSQGADPN---AKDSDGKTPLHLAAENGHKE 117
Query: 253 IVAEILQ-----NCPESAARQMLEKTNEEQNTPLHEAVRL 287
+V +L N +S R L+ E N E V+L
Sbjct: 118 VVKLLLSQGADPNTSDSDGRTPLDLAREHGN---EEVVKL 154
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 42/186 (22%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ ++L EAA G+ + +++ + + +D T LH+ H
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGH-------------- 49
Query: 61 XXFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE 117
++++ L S NAK G +PLHLAA+ GH +V+ L L +G +
Sbjct: 50 ----KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL----------LSQGAD 95
Query: 118 SAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVAN 175
A+ + + TPLH A +VVK+L+ ADP+ S S R T L +A +
Sbjct: 96 PNAK------DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGR---TPLDLAREH 146
Query: 176 GSAEIV 181
G+ E+V
Sbjct: 147 GNEEVV 152
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 26/151 (17%)
Query: 79 NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
NAK G +PLHLAA++GH IVE L L+ G + A+ +++ TPL
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAK------DKDGYTPL 72
Query: 136 HEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
H A R +++V++L+KA V+ + +++ T L++A G EIV +L+ A+
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIKA 226
K TP A+R D+ ++L KA
Sbjct: 132 KFGK------TPFDLAIREGHEDIAEVLQKA 156
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + +++ TPL++A G EIV +L+ + A+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+++ TPLH A R +++ ++L++A V + +++ TPL++AA G ++IV
Sbjct: 65 ------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV 117
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKT A+ DI E
Sbjct: 118 EVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAE 151
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
TPLH A R +++V++L+KA V + +++ TPL++A G EIV +L+ +
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK 325
A+ +++ TPLH A R +++ ++L++A V + ++ +TP +A G
Sbjct: 96 AK------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIREGHED 148
Query: 326 IVAKILQK 333
I A++LQK
Sbjct: 149 I-AEVLQK 155
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 54/189 (28%), Positives = 88/189 (46%), Gaps = 39/189 (20%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D T LH+ HL +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI----------- 50
Query: 61 XXFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE 117
VE +L + NAK G +PLHLAA++GH IVE L L+ G +
Sbjct: 51 ---VEVLLKAGADV----NAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGAD 93
Query: 118 SAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGS 177
A+ +++ TPLH A R +++V++L+KA V+ + ++ +T +A+ G
Sbjct: 94 VNAK------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIREGH 146
Query: 178 AEIVAEILQ 186
+I AE+LQ
Sbjct: 147 EDI-AEVLQ 154
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A R +++ ++L++A V + +++ TPL++AA G ++IV +L+
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
+ DG T LH A +I+E +L
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ V + +++ TPL++AA G ++IV +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 341 GPDGKTALHAAVYTYPTDILERVL 364
DG T LH A +I+E +L
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLL 88
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 74/128 (57%), Gaps = 9/128 (7%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
TPLH A R +++V++L+KA V + +++ TPL++A G EIV +L+ +
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK 325
A+ +++ TPLH A R +++ ++L++A V + ++ +TP +A NG+
Sbjct: 96 AK------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIDNGNED 148
Query: 326 IVAKILQK 333
I A++LQK
Sbjct: 149 I-AEVLQK 155
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 79/154 (51%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + +++ TPL++A G EIV +L+ + A+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+++ TPLH A R +++ ++L++A V + +++ TPL++AA G ++IV
Sbjct: 65 ------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV 117
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKT A+ DI E
Sbjct: 118 EVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAE 151
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 26/151 (17%)
Query: 79 NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
NAK G +PLHLAA++GH IVE L L+ G + A+ +++ TPL
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAK------DKDGYTPL 72
Query: 136 HEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
H A R +++V++L+KA V+ + +++ T L++A G EIV +L+ A+
Sbjct: 73 HLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 131
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIKA 226
K TP A+ D+ ++L KA
Sbjct: 132 KFGK------TPFDLAIDNGNEDIAEVLQKA 156
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 39/189 (20%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D T LH+ HL +
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI----------- 50
Query: 61 XXFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE 117
VE +L + NAK G +PLHLAA++GH IVE L L+ G +
Sbjct: 51 ---VEVLLKAGADV----NAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGAD 93
Query: 118 SAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGS 177
A+ +++ TPLH A R +++V++L+KA V+ + ++ +T +A+ NG+
Sbjct: 94 VNAK------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIDNGN 146
Query: 178 AEIVAEILQ 186
+I AE+LQ
Sbjct: 147 EDI-AEVLQ 154
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A R +++ ++L++A V + +++ TPL++AA G ++IV +L+
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 95
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
+ DG T LH A +I+E +L
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLL 121
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ V + +++ TPL++AA G ++IV +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 341 GPDGKTALHAAVYTYPTDILERVL 364
DG T LH A +I+E +L
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLL 88
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 176 GSAEIVAEILQNCPQS---AARQMLEKTNEEQN-------TPLHEAVRLRRVDVVKILIK 225
GS E + +I C + A R L+ T + N +PLH A R R VV++LI
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 226 ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV 285
+ NR +TPL++A ++G +IV ++LQ + + NE N PLH A
Sbjct: 61 RGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYAC 113
Query: 286 RLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
VA+ L+ A+ + N+ E P+ A A
Sbjct: 114 FWGQDQVAEDLV-ANGALVSICNKYGEMPVDKAKA 147
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 12/132 (9%)
Query: 249 GSAEIVAEILQNCPES---AARQMLEKTNEEQN-------TPLHEAVRLRSVDVAKILIE 298
GS E + +I C E A R L+ T + N +PLH A R V ++LI
Sbjct: 1 GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60
Query: 299 ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTD 358
+ NR +TPL++AA++G IV K+LQ G LH A + + D
Sbjct: 61 RGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF-WGQD 118
Query: 359 ILERVLIVRGTF 370
+ L+ G
Sbjct: 119 QVAEDLVANGAL 130
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 18/153 (11%)
Query: 64 VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQI 123
V LD + L Q + G SPLH A ++G +A+VE LI+ R
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---------------- 64
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAE 183
+ + N +TPLH A D+V+ L++ ++ + N + L+ A G ++ +
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAED 123
Query: 184 ILQNCPQ-SAARQMLEKTNEEQNTPLHEAVRLR 215
++ N S + E ++ PL E +R R
Sbjct: 124 LVANGALVSICNKYGEMPVDKAKAPLRELLRER 156
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 39/216 (18%)
Query: 144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ-NCPQSAARQMLEKTNE 202
+D +K I AD ++ +++S T L+ A + G EIV +LQ P + ++
Sbjct: 19 LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKDD 71
Query: 203 EQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCP 262
+PLH A R ++VK L+ HV + N+N TPL+ A + EI +L+
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 263 ESAARQMLEKT---------------------------NEEQNTPLHEAVRLRSVDVAKI 295
A+ + T + E NTPLH A V+ AK
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 296 LIEADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
L+ + Y N+ +TPL + A G + ++ K L
Sbjct: 191 LVTQGASI-YIENKEEKTPLQV--AKGGLGLILKRL 223
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 45/200 (22%)
Query: 73 SLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQN 132
SL + + + LH A GHT IVEFL L+ GV + ++
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVP------VNDKDDAGW 74
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
+PLH A ++VK L+ HV+ + N+N T L+ A + EI +L+
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 193 ARQMLEKT---------------------------NEEQNTPLHEAVRLRRVDVVKILIK 225
A+ + T + E NTPLH A RV+ K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 226 ADPHVPYSANRNSETPLYMA 245
+ Y N+ +TPL +A
Sbjct: 194 QGASI-YIENKEEKTPLQVA 212
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-ETPLYMAVANGS 250
A + + +T+++ T LH A ++V+ L++ VP + ++ +PL++A + G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGR 85
Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
EIV +L A N+ TPLH A ++A +L+E + P + +
Sbjct: 86 DEIVKALLVKGAHVNA------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 138
Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
T ++ AAA G++K+V +L S + +G T LH A
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 216 RVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ-NCPESAARQMLEKTN 274
++D +K I AD + +++S T L+ A + G EIV +LQ P + +
Sbjct: 18 KLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKD 70
Query: 275 EEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC 334
+ +PLH A ++ K L+ HV + N+N TPL+ AA+ +I +L+
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 335 PSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQ 376
+P + TA+H A ++ +L + + Q+ +
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 32/215 (14%)
Query: 84 SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRS 143
SP+H AA GH + LI + + + + +PLHEA
Sbjct: 5 SPMHEAAIHGHQLSLRNLI----------------SQGWAVNIITADHVSPLHEACLGGH 48
Query: 144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEE 203
+ VKIL+K V+ + T L+ A +GS + V +LQ+ A+ Q +
Sbjct: 49 LSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQH---GASVQ----PESD 100
Query: 204 QNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPE 263
+P+HEA R V+ V LI ++ + + TPLY+A N V ++L E
Sbjct: 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL----E 155
Query: 264 SAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
S A + Q++PLH R S ++A +L++
Sbjct: 156 SGAD---VNQGKGQDSPLHAVARTASEELACLLMD 187
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 10/149 (6%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
+PLHEA + VKIL+K V + TPL+ A +GS + V +LQ+ A
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQH---GA 93
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK 325
+ Q + +P+HEA R V+ LI ++ + + TPLY+A N
Sbjct: 94 SVQ----PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRA 148
Query: 326 IVAKILQKCPSPAHEGPDGKTALHAAVYT 354
V K+L+ + ++G + LHA T
Sbjct: 149 CVKKLLES-GADVNQGKGQDSPLHAVART 176
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 26/105 (24%)
Query: 71 CPSLLFQANA----KGD--SPLHLAAKKGHTAIVEFLIVFANRQPID---------LERG 115
C +LL Q A + D SP+H AA++GH V LI + ID L
Sbjct: 84 CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN--IDHKISHLGTPLYLA 141
Query: 116 VESAARQILKMTNEE---------QNTPLHEAVRLRSVDVVKILI 151
E+ R +K E Q++PLH R S ++ +L+
Sbjct: 142 CENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELACLLM 186
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 55.5 bits (132), Expect = 8e-08, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 237 NSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
N TPL++A NG E+V +L+ + A+ ++ TPLH A R ++V K+L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLL 54
Query: 297 IEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQ 332
+EA V + ++N TPL++AA NG +++V +L+
Sbjct: 55 LEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
TPLH A R ++VVK+L++A V + ++N TPL++A NG E+V +L+ +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
A+ ++ TPLH A R ++V K+L+EA
Sbjct: 63 AK------DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 17/105 (16%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLHLAA+ GH +V+ L LE G + A+ ++ TPLH A R
Sbjct: 2 GRTPLHLAARNGHLEVVKLL----------LEAGADVNAK------DKNGRTPLHLAARN 45
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
++VVK+L++A V+ + ++N T L++A NG E+V +L+
Sbjct: 46 GHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 164 NSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL 223
N T L++A NG E+V +L+ A+ ++ TPLH A R ++VVK+L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAK------DKNGRTPLHLAARNGHLEVVKLL 54
Query: 224 IKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
++A V + ++N TPL++A NG E+V +L+
Sbjct: 55 LEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A R ++V K+L+EA V + ++N TPL++AA NG +++V +L+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 339 HEGPDGKTALHAA 351
+ +G+T LH A
Sbjct: 63 AKDKNGRTPLHLA 75
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 19/78 (24%)
Query: 79 NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
NAK G +PLHLAA+ GH +V+ L LE G + A+ ++ TPL
Sbjct: 29 NAKDKNGRTPLHLAARNGHLEVVKLL----------LEAGADVNAK------DKNGRTPL 72
Query: 136 HEAVRLRSVDVVKILIKA 153
H A R ++VVK+L++A
Sbjct: 73 HLAARNGHLEVVKLLLEA 90
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 310 NSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
N TPL++AA NG +++V +L+ + +G+T LH A
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 42
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + +++ TPL++A G EIV +L+ + A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+++ TPLH A R +++ ++L++A V + +++ TPL++AA G ++IV
Sbjct: 77 ------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 20/125 (16%)
Query: 79 NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
NAK G +PLHLAA++GH IVE L L+ G + A+ +++ TPL
Sbjct: 41 NAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGADVNAK------DKDGYTPL 84
Query: 136 HEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
H A R +++V++L+KA V+ + +++ T L++A G EIV +L+ A+
Sbjct: 85 HLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 143
Query: 196 MLEKT 200
KT
Sbjct: 144 KFGKT 148
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 39/189 (20%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D T LH+ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE 117
VE +L + NAK G +PLHLAA++GH IVE L L+ G +
Sbjct: 63 ---VEVLLKAGADV----NAKDKDGYTPLHLAAREGHLEIVEVL----------LKAGAD 105
Query: 118 SAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGS 177
A+ +++ TPLH A R +++V++L+KA V+ + ++ +T +++ NG+
Sbjct: 106 VNAK------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGN 158
Query: 178 AEIVAEILQ 186
E +AEILQ
Sbjct: 159 -EDLAEILQ 166
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
TPLH A R +++V++L+KA V + +++ TPL++A G EIV +L+ +
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVK 325
A+ +++ TPLH A R +++ ++L++A V + ++ +T ++ NG+ +
Sbjct: 108 AK------DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGN-E 159
Query: 326 IVAKILQ 332
+A+ILQ
Sbjct: 160 DLAEILQ 166
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A R +++ ++L++A V + +++ TPL++AA G ++IV +L+
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 107
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
+ DG T LH A +I+E +L
Sbjct: 108 AKDKDGYTPLHLAAREGHLEIVEVLL 133
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ V + +++ TPL++AA G ++IV +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 341 GPDGKTALHAAVYTYPTDILERVL 364
DG T LH A +I+E +L
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLL 100
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 9/193 (4%)
Query: 161 ANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVV 220
A+ + +T L++AV G+ V ++ N Q R+ L+ N + TPLH AV VV
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLV-NLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVV 62
Query: 221 KILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQML--EKTNEEQN 278
++L+ A P + +R+ +T ++A + S + +L +SAA L E N +
Sbjct: 63 RLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALL----DSAAPGTLDLEARNYDGL 117
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
T LH AV + ++L+E + ++ +PL A N S+ +V +LQ +
Sbjct: 118 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177
Query: 339 HEGPDGKTALHAA 351
+ G +ALH+A
Sbjct: 178 AQMYSGSSALHSA 190
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
+A+ GD+PLH+A +G+ V L+ + R+ L + N + TPLH
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNL-----------FQQGGRE-LDIYNNLRQTPLH 51
Query: 137 EAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQM 196
AV VV++L+ A + +R+ +T ++A + S + +L +
Sbjct: 52 LAVITTLPSVVRLLVTAGA-SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLD-- 108
Query: 197 LEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAE 256
LE N + T LH AV + V++L++ + ++ +PL AV N S +V
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 257 ILQN 260
+LQ+
Sbjct: 169 LLQH 172
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 234 ANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVA 293
A+ + +TPL++AV G+ V ++ N + R+ L+ N + TPLH AV V
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLV-NLFQQGGRE-LDIYNNLRQTPLHLAVITTLPSVV 62
Query: 294 KILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAH-----EGPDGKTAL 348
++L+ A P + +R+ +T ++A + S + +L +P DG TAL
Sbjct: 63 RLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSA-APGTLDLEARNYDGLTAL 120
Query: 349 HAAVYTYPTDILERVLIVRG 368
H AV T + ++ +L+ RG
Sbjct: 121 HVAVNTECQETVQ-LLLERG 139
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 39/216 (18%)
Query: 144 VDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ-NCPQSAARQMLEKTNE 202
+D +K I AD ++ +++S T L+ A + G EIV +LQ P + ++
Sbjct: 19 LDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKDD 71
Query: 203 EQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCP 262
+PLH A ++VK L+ HV + N+N TPL+ A + EI +L+
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 263 ESAARQMLEKT---------------------------NEEQNTPLHEAVRLRSVDVAKI 295
A+ + T + E NTPLH A V+ AK
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190
Query: 296 LIEADPHVPYSANRNSETPLYMAAANGSVKIVAKIL 331
L+ + Y N+ +TPL + A G + ++ K L
Sbjct: 191 LVTQGASI-YIENKEEKTPLQV--AKGGLGLILKRL 223
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 45/200 (22%)
Query: 73 SLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQN 132
SL + + + LH A GHT IVEFL L+ GV + ++
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVP------VNDKDDAGW 74
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
+PLH A ++VK L+ HV+ + N+N T L+ A + EI +L+
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 193 ARQMLEKT---------------------------NEEQNTPLHEAVRLRRVDVVKILIK 225
A+ + T + E NTPLH A RV+ K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 226 ADPHVPYSANRNSETPLYMA 245
+ Y N+ +TPL +A
Sbjct: 194 QGASI-YIENKEEKTPLQVA 212
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-ETPLYMAVANGS 250
A + + +T+++ T LH A ++V+ L++ VP + ++ +PL++A + G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGX 85
Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
EIV +L A N+ TPLH A ++A +L+E + P + +
Sbjct: 86 DEIVKALLVKGAHVNA------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 138
Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
T ++ AAA G++K+V +L S + +G T LH A
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 216 RVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ-NCPESAARQMLEKTN 274
++D +K I AD + +++S T L+ A + G EIV +LQ P + +
Sbjct: 18 KLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKD 70
Query: 275 EEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC 334
+ +PLH A ++ K L+ HV + N+N TPL+ AA+ +I +L+
Sbjct: 71 DAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 335 PSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEIQ 376
+P + TA+H A ++ +L + + Q+ +
Sbjct: 130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTE 171
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ A+ + + TPL+MA A G EIV +L+N + A
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA- 63
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAANG 322
+ TPLH A L +++ ++L++ Y A+ N++ TPLY+AA G
Sbjct: 64 -----VDTNGTTPLHLAASLGHLEIVEVLLK------YGADVNAKDATGITPLYLAAYWG 112
Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
++IV +L+ + GKTA ++ D+ E
Sbjct: 113 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAE 151
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL+ A+ + + + T L+MA A G EIV +L+N A
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA- 63
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE-----TPLYMAVANG 249
+ TPLH A L +++V++L+K Y A+ N++ TPLY+A G
Sbjct: 64 -----VDTNGTTPLHLAASLGHLEIVEVLLK------YGADVNAKDATGITPLYLAAYWG 112
Query: 250 SAEIVAEILQNCPESAARQMLEKT 273
EIV +L++ + A+ KT
Sbjct: 113 HLEIVEVLLKHGADVNAQDKFGKT 136
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + ++ D T LH+ HL
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLE------------ 49
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
+ ++L + + + G +PLHLAA GH IVE L L+ G + A
Sbjct: 50 ---IVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVL----------LKYGADVNA 96
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ + TPL+ A +++V++L+K V+ + ++ +T +++ G+ E
Sbjct: 97 KDATGI------TPLYLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDIGN-ED 148
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 149 LAEILQ 154
Score = 37.7 bits (86), Expect = 0.018, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A + +++ ++L+ V + + N TPL++AA+ G ++IV +L+
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLAASLGHLEIVEVLLKYGADVN 95
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
+ G T L+ A Y +I+E +L
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLL 121
Score = 32.0 bits (71), Expect = 0.88, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ A+ + + TPL+MAAA G ++IV +L+
Sbjct: 6 LLEAARAGQDDEVRILM-ANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 341 GPDGKTALHAAVYTYPTDILERVL 364
+G T LH A +I+E +L
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLL 88
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 89/211 (42%), Gaps = 39/211 (18%)
Query: 147 VKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ-NCPQSAARQMLEKTNEEQN 205
+K I AD ++ +++S T L+ A + G EIV +LQ P + ++
Sbjct: 23 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKDDAGW 75
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
+PLH A R ++VK L+ V + N+N TPL+ A + EI +L+
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 266 ARQMLEKT---------------------------NEEQNTPLHEAVRLRSVDVAKILIE 298
A+ E T + E NTPLH A V+ AK+L+
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 299 ADPHVPYSANRNSETPLYMAAANGSVKIVAK 329
+ Y N+ +TPL + A G + ++ K
Sbjct: 195 QGASI-YIENKEEKTPLQV--AKGGLGLILK 222
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE-TPLYMAVANGS 250
A + + +T+++ T LH A ++V+ L++ VP + ++ +PL++A + G
Sbjct: 29 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGR 86
Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
EIV +L + A N+ TPLH A ++A +L+E + P + +
Sbjct: 87 DEIVKALLGKGAQVNA------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 139
Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
T ++ AAA G++K++ +L S + +G T LH A
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 181
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 45/200 (22%)
Query: 73 SLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQN 132
SL + + + LH A GHT IVEFL L+ GV + ++
Sbjct: 32 SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVP------VNDKDDAGW 75
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
+PLH A ++VK L+ V+ + N+N T L+ A + EI +L+
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 193 ARQMLEKT---------------------------NEEQNTPLHEAVRLRRVDVVKILIK 225
A+ E T + E NTPLH A RV+ K+L+
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 194
Query: 226 ADPHVPYSANRNSETPLYMA 245
+ Y N+ +TPL +A
Sbjct: 195 QGASI-YIENKEEKTPLQVA 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 87/207 (42%), Gaps = 39/207 (18%)
Query: 151 IKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ-NCPQSAARQMLEKTNEEQNTPLH 209
I AD ++ +++S T L+ A + G EIV +LQ P + ++ +PLH
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP-------VNDKDDAGWSPLH 78
Query: 210 EAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQM 269
A R ++VK L+ V + N+N TPL+ A + EI +L+ A+
Sbjct: 79 IAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 270 LEKT---------------------------NEEQNTPLHEAVRLRSVDVAKILIEADPH 302
E T + E NTPLH A V+ AK+L+
Sbjct: 138 YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS 197
Query: 303 VPYSANRNSETPLYMAAANGSVKIVAK 329
+ Y N+ +TPL + A G + ++ K
Sbjct: 198 I-YIENKEEKTPLQV--AKGGLGLILK 221
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-ETPLYMAVANGS 250
A + + +T+++ T LH A ++V+ L++ VP + ++ +PL++A + G
Sbjct: 28 ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGR 85
Query: 251 AEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRN 310
EIV +L + A N+ TPLH A ++A +L+E + P + +
Sbjct: 86 DEIVKALLGKGAQVNA------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHY 138
Query: 311 SETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
T ++ AAA G++K++ +L S + +G T LH A
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 180
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 79/200 (39%), Gaps = 45/200 (22%)
Query: 73 SLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQN 132
SL + + + LH A GHT IVEFL L+ GV + ++
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFL----------LQLGVP------VNDKDDAGW 74
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
+PLH A ++VK L+ V+ + N+N T L+ A + EI +L+
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 193 ARQMLEKT---------------------------NEEQNTPLHEAVRLRRVDVVKILIK 225
A+ E T + E NTPLH A RV+ K+L+
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 193
Query: 226 ADPHVPYSANRNSETPLYMA 245
+ Y N+ +TPL +A
Sbjct: 194 QGASI-YIENKEEKTPLQVA 212
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + N + TPL++A +NG EIV +L+N + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ TPLH A +++ ++L++ V N + TPL++AA G ++IV
Sbjct: 77 DL------TGITPLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL+ V+ + N + T L++A +NG EIV +L+N A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
+ TPLH A +++V++L+K V N + TPL++A G EIV
Sbjct: 77 DL------TGITPLHLAAATGHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIV 129
Query: 255 AEILQNCPESAARQMLEKT 273
+L++ + A+ KT
Sbjct: 130 EVLLKHGADVNAQDKFGKT 148
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 74/133 (55%), Gaps = 9/133 (6%)
Query: 127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
T+ + TPLH A +++V++L+K V+ +++ T L++A A G EIV +L+
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVN-ASDLTGITPLHLAAATGHLEIVEVLLK 101
Query: 187 NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAV 246
+ A + + +TPLH A + +++V++L+K V + ++ +T +++
Sbjct: 102 HGADVNA------YDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN-AQDKFGKTAFDISI 154
Query: 247 ANGSAEIVAEILQ 259
NG+ E +AEILQ
Sbjct: 155 DNGN-EDLAEILQ 166
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + TD T LH+ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + ++ G +PLHLAA GH IVE L L+ G + A
Sbjct: 63 ---VEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVL----------LKHGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ + +TPLH A + +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 ------YDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 17/119 (14%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLHLAA GH IVE L L+ G + A + + TPLH A
Sbjct: 47 GYTPLHLAASNGHLEIVEVL----------LKNGADVNASDLTGI------TPLHLAAAT 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKT 200
+++V++L+K V+ N + T L++A G EIV +L++ A+ KT
Sbjct: 91 GHLEIVEVLLKHGADVNAYDN-DGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKT 148
Score = 36.2 bits (82), Expect = 0.052, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ V + N + TPL++AA+NG ++IV +L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDN-DGYTPLHLAASNGHLEIVEVLLKNGADVNAS 76
Query: 341 GPDGKTALHAAVYTYPTDILERVL 364
G T LH A T +I+E +L
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLL 100
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R R D V+IL+ V +A+ TPL++A G EIV +L+N + A
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
L +TPLH A +++ ++L++ V + + N TPL++AA G ++IV
Sbjct: 77 DTL------GSTPLHLAAHFGHLEIVEVLLKNGADVN-AKDDNGITPLHLAANRGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISINNGNEDLAE 163
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + DV+ T LH+ HL +
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV 73
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
+ + G +PLHLAA GH IVE L L+ G + A
Sbjct: 74 NAY---------------DTLGSTPLHLAAHFGHLEIVEVL----------LKNGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ ++ TPLH A +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 K------DDNGITPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGKTAFDISINNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 8/139 (5%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL+ V+ +A+ T L++A G EIV +L+N A
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
L +TPLH A +++V++L+K V + + N TPL++A G EIV
Sbjct: 77 DTL------GSTPLHLAAHFGHLEIVEVLLKNGADVN-AKDDNGITPLHLAANRGHLEIV 129
Query: 255 AEILQNCPESAARQMLEKT 273
+L+ + A+ KT
Sbjct: 130 EVLLKYGADVNAQDKFGKT 148
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
A+ G +PLHLAA GH IVE L L+ G + A L +TPLH
Sbjct: 43 ADVVGWTPLHLAAYWGHLEIVEVL----------LKNGADVNAYDTLG------STPLHL 86
Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
A +++V++L+K V+ + + N T L++A G EIV +L+ A+
Sbjct: 87 AAHFGHLEIVEVLLKNGADVN-AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Query: 198 EKT 200
KT
Sbjct: 146 GKT 148
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A +++ ++L++ V S TPL++AA G ++IV +L+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS-TPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
+ +G T LH A +I+E +L
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLL 133
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 112/301 (37%), Gaps = 61/301 (20%)
Query: 81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
GD+ LHLA H ++FL+ F SA + L + N+ T LH A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGF-------------SAGHEYLDLQNDLGQTALHLAAI 54
Query: 141 LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKT 200
L V+ L A G+ +VAE
Sbjct: 55 LGEASTVEKLYAA----------------------GAGVLVAE----------------- 75
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
+T LH A R+R +L++ P P A+ T + S A Q
Sbjct: 76 -RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134
Query: 261 CPESAA-------RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET 313
PE+ R LE N + +TPLH AV + ++ ++L +A + T
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194
Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQ 373
PL++A + ++ +L+ P G+T L +A+ P IL R+L G +P+
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR-PNPILARLLRAHGAPEPE 253
Query: 374 E 374
+
Sbjct: 254 D 254
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 23/202 (11%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
N G + LHLAA G + VE L A + ERG +A LH A
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTA---------------LHLA 85
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA----- 193
R+R+ +L++ P A+ T + S A Q P++
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145
Query: 194 --RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
R LE N + +TPLH AV + ++V++L A + TPL++AV +A
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205
Query: 252 EIVAEILQNCPESAARQMLEKT 273
++ +L+ + AR +T
Sbjct: 206 SVLELLLKAGADPTARMYGGRT 227
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 112/301 (37%), Gaps = 61/301 (20%)
Query: 81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
GD+ LHLA H ++FL+ F SA + L + N+ T LH A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGF-------------SAGHEYLDLQNDLGQTALHLAAI 54
Query: 141 LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKT 200
L V+ L A G+ +VAE
Sbjct: 55 LGEASTVEKLYAA----------------------GAGVLVAE----------------- 75
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
+T LH A R+R +L++ P P A+ T + S A Q
Sbjct: 76 -RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134
Query: 261 CPESAA-------RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET 313
PE+ R LE N + +TPLH AV + ++ ++L +A + T
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194
Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQ 373
PL++A + ++ +L+ P G+T L +A+ P IL R+L G +P+
Sbjct: 195 PLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR-PNPILARLLRAHGAPEPE 253
Query: 374 E 374
+
Sbjct: 254 D 254
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 23/202 (11%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
N G + LHLAA G + VE L A + ERG +A LH A
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYA-AGAGVLVAERGGHTA---------------LHLA 85
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAA----- 193
R+R+ +L++ P A+ T + S A Q P++
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145
Query: 194 --RQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
R LE N + +TPLH AV + ++V++L A + TPL++AV +A
Sbjct: 146 DWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205
Query: 252 EIVAEILQNCPESAARQMLEKT 273
++ +L+ + AR +T
Sbjct: 206 SVLELLLKAGADPTARMYGGRT 227
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 235 NRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAK 294
+++ +PL++A +G A+++ +L++ + AR N +Q PLH A + V K
Sbjct: 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGAR------NADQAVPLHLACQQGHFQVVK 136
Query: 295 ILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYT 354
L++++ P + + TPL A + G ++VA +LQ S G TALH AV
Sbjct: 137 CLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIE 195
Query: 355 YPTDILERVLI 365
++E +L+
Sbjct: 196 KHVFVVELLLL 206
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G SPLH+AA G ++ P+ L+ G + AR N +Q PLH A +
Sbjct: 86 GSSPLHVAALHGRADLI----------PLLLKHGANAGAR------NADQAVPLHLACQQ 129
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTN 201
VVK L+ ++ + + L+Y A + G E+VA +LQ+ + +N
Sbjct: 130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIY-ACSGGHHELVALLLQH------GASINASN 182
Query: 202 EEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNC 261
+ NT LHEAV + V VV++L+ V N+ T + A N + E+LQ
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQV-LNKRQRTAVDCAEQNSK---IMELLQVV 238
Query: 262 PESAA 266
P A
Sbjct: 239 PSCVA 243
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 48/211 (22%)
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAE 183
+ +T+++ ++PLH +A +G A+++
Sbjct: 79 VNVTSQDGSSPLH----------------------------------VAALHGRADLIPL 104
Query: 184 ILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLY 243
+L++ + AR N +Q PLH A + VVK L+ ++ P + + TPL
Sbjct: 105 LLKHGANAGAR------NADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLI 157
Query: 244 MAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHV 303
A + G E+VA +LQ+ + +N + NT LHEAV + V V ++L+ V
Sbjct: 158 YACSGGHHELVALLLQH------GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASV 211
Query: 304 PYSANRNSETPLYMAAANGSVKIVAKILQKC 334
N+ T + A N + + +++ C
Sbjct: 212 QV-LNKRQRTAVDCAEQNSKIMELLQVVPSC 241
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 29/149 (19%)
Query: 69 DLCPSLLFQA------NAKGDSPLHLAAKKGHTAIVEFLIVFANRQP--IDLE------R 114
DL P LL NA PLHLA ++GH +V+ L+ +N +P DL
Sbjct: 100 DLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL-DSNAKPNKKDLSGNTPLIY 158
Query: 115 GVESAARQILKM----------TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRN 164
+++ + +N + NT LHEAV + V VV++L+ V N+
Sbjct: 159 ACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV-LNKR 217
Query: 165 SETLLYMAVANGSAEIVAEILQNCPQSAA 193
T + A N + E+LQ P A
Sbjct: 218 QRTAVDCAEQNSK---IMELLQVVPSCVA 243
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + TD + +T LH+ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + N G +PLHLAA GH IVE L L+ G + A
Sbjct: 63 ---VEVLLKYGADVNAWDNY-GATPLHLAADNGHLEIVEVL----------LKHGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ + E TPLH A +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 K------DYEGFTPLHLAAYDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 74/139 (53%), Gaps = 29/139 (20%)
Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-----ETPLYMAVANGSAEIVAEILQ 259
+TPLH A + +++V++L+K Y A+ N+ TPL++A NG EIV +L+
Sbjct: 48 HTPLHLAAKTGHLEIVEVLLK------YGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 260 NCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TP 314
+ + A+ + E TPLH A +++ ++L++ Y A+ N++ T
Sbjct: 102 HGADVNAK------DYEGFTPLHLAAYDGHLEIVEVLLK------YGADVNAQDKFGKTA 149
Query: 315 LYMAAANGSVKIVAKILQK 333
++ NG+ + +A+ILQK
Sbjct: 150 FDISIDNGN-EDLAEILQK 167
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 278 NTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS-----ETPLYMAAANGSVKIVAKILQ 332
+TPLH A + +++ ++L++ Y A+ N+ TPL++AA NG ++IV +L+
Sbjct: 48 HTPLHLAAKTGHLEIVEVLLK------YGADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 333 KCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
+ +G T LH A Y +I+E +L
Sbjct: 102 HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + + TPL++A G EIV +L+ + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNA- 75
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ TPLH A +++ ++L++ V + + TPL++AA +G ++IV
Sbjct: 76 -----WDNYGATPLHLAADNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D T LH+ ++ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + A+ GD+PLHLAA GH IVE L L+ G + A
Sbjct: 63 ---VEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVL----------LKNGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
T+ TPLH A +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 ------TDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query: 128 NEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN 187
++ TPLH A +++V++L+K V+ +A++ +T L++A G EIV +L+N
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 188 CPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVA 247
A T+ TPLH A +++V++L+K V + ++ +T +++
Sbjct: 103 GADVNA------TDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Query: 248 NGSAEIVAEILQ 259
NG+ E +AEILQ
Sbjct: 156 NGN-EDLAEILQ 166
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 78/155 (50%), Gaps = 10/155 (6%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPE-SAA 266
L EA R + D V+IL+ V + + + +TPL++A G EIV +L++ + +AA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 267 RQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKI 326
+M +TPLH A +++ ++L++ V + + TPL++AA G ++I
Sbjct: 77 DKM-------GDTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEI 128
Query: 327 VAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
V +L+ + GKTA ++ D+ E
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
++ TPLH A +++V++L+K V +A++ +TPL++A G EIV +L+N
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLLKN 102
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
+ A T+ TPLH A +++ ++L++ V + ++ +T ++
Sbjct: 103 GADVNA------TDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Query: 321 NGSVKIVAKILQK 333
NG+ + +A+ILQK
Sbjct: 156 NGN-EDLAEILQK 167
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 38/184 (20%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ ++L EAA G+ + +++ + + +D T LH H
Sbjct: 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGH-------------- 49
Query: 61 XXFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVE 117
++I+ L S NAK G +PLH AAK+GH IV+ LI +G +
Sbjct: 50 ----KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI----------SKGAD 95
Query: 118 SAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGS 177
A+ + + TPLH A + ++VK+LI V+ +++ + T L +A +G+
Sbjct: 96 VNAK------DSDGRTPLHYAAKEGHKEIVKLLISKGADVN-TSDSDGRTPLDLAREHGN 148
Query: 178 AEIV 181
EIV
Sbjct: 149 EEIV 152
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 23/148 (15%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
+++ G +PLH AAK+GH IV+ LI +G + A+ + + TPLH
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLI----------SKGADVNAK------DSDGRTPLHY 76
Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
A + ++VK+LI V+ + + + T L+ A G EIV ++ +
Sbjct: 77 AAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIVKLLISKGAD------V 129
Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIK 225
++ + TPL A ++VK+L K
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA D VK LI+ V +++ + TPL+ A G EIV ++ + A+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ + TPLH A + ++ K+LI V + + + TPL+ AA G +IV
Sbjct: 67 ------DSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAKEGHKEIV 119
Query: 328 AKILQKCPSPAHEGPDGKTALHAA 351
++ K DG+T L A
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLA 143
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP 301
L A NG+ + V ++++N + A ++ + TPLH A + ++ K+LI
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNA------SDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 302 HVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
V + + + TPL+ AA G +IV ++ K + DG+T LH A +I+
Sbjct: 62 DVN-AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV- 119
Query: 362 RVLIVRG 368
++LI +G
Sbjct: 120 KLLISKG 126
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + + TPL++A G EIV +L+N + A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
L T PLH A R +++ ++L++ V +++ + TPL++AA G ++IV
Sbjct: 77 DSLGVT------PLHLAARRGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 17/119 (14%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLHLAA GH IVE L L+ G + A+ L + TPLH A R
Sbjct: 47 GWTPLHLAAHFGHLEIVEVL----------LKNGADVNAKDSLGV------TPLHLAARR 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKT 200
+++V++L+K V+ +++ + T L++A G EIV +L+N A+ KT
Sbjct: 91 GHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKT 148
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL+ V+ + + T L++A G EIV +L+N A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
L T PLH A R +++V++L+K V +++ + TPL++A G EIV
Sbjct: 77 DSLGVT------PLHLAARRGHLEIVEVLLKNGADVN-ASDSHGFTPLHLAAKRGHLEIV 129
Query: 255 AEILQNCPESAARQMLEKT 273
+L+N + A+ KT
Sbjct: 130 EVLLKNGADVNAQDKFGKT 148
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 5 LYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXXXXFV 64
L+ AA G +E + ++ + D + T LH+ R HL + V
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEI--------------V 96
Query: 65 EQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI 102
E +L + +++ G +PLHLAAK+GH IVE L+
Sbjct: 97 EVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLL 133
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A +++ ++L++ V + + TPL++AA G ++IV +L+
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVN-AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
G T LH A +I+E +L
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLL 133
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 183 EILQNCPQS---AARQMLEKTNEEQN-------TPLHEAVRLRRVDVVKILIKADPHVPY 232
+I C + A R L+ T + N +PLH A R R VV++LI +
Sbjct: 3 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 62
Query: 233 SANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDV 292
NR +TPL++A ++G +IV ++LQ + + NE N PLH A V
Sbjct: 63 -MNRGDDTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNVPLHYACFWGQDQV 115
Query: 293 AKILIEADPHVPYSANRNSETPLYMAAA 320
A+ L+ A+ + N+ E P+ A A
Sbjct: 116 AEDLV-ANGALVSICNKYGEMPVDKAKA 142
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 68 LDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMT 127
LD + L Q + G SPLH A ++G +A+VE LI+ R + +
Sbjct: 20 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR----------------INVM 63
Query: 128 NEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN 187
N +TPLH A D+V+ L++ ++ + N + L+ A G ++ +++ N
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVAN 122
Query: 188 CPQ-SAARQMLEKTNEEQNTPLHEAVRLR 215
S + E ++ PL E +R R
Sbjct: 123 GALVSICNKYGEMPVDKAKAPLRELLRER 151
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 256 EILQNCPES---AARQMLEKTNEEQN-------TPLHEAVRLRSVDVAKILIEADPHVPY 305
+I C E A R L+ T + N +PLH A R V ++LI +
Sbjct: 3 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 62
Query: 306 SANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVY 353
NR +TPL++AA++G IV K+LQ G LH A +
Sbjct: 63 -MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 109
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA D VK LI+ V +++ + TPL+ A NG E+V ++ + A+
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ + TPLH A +V K+LI V + + + TPL+ AA NG ++V
Sbjct: 67 ------DSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVV 119
Query: 328 AKILQKCPSPAHEGPDGKTALHAA 351
++ K DG+T L A
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLA 143
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
+++ G +PLH AA+ GH +V+ LI +G + A+ + + TPLH
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLI----------SKGADVNAK------DSDGRTPLHH 76
Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
A +VVK+LI V+ + + + T L+ A NG E+V ++ +
Sbjct: 77 AAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGAD------V 129
Query: 198 EKTNEEQNTPLHEAVRLRRVDVVKILIK 225
++ + TPL A +VVK+L K
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 242 LYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADP 301
L A NG+ + V ++++N + A ++ + TPLH A +V K+LI
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNA------SDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 302 HVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
V + + + TPL+ AA NG ++V ++ K + DG+T LH A +++
Sbjct: 62 DVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV- 119
Query: 362 RVLIVRG 368
++LI +G
Sbjct: 120 KLLISKG 126
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA + D V+IL+ V + + N TPL++A ANG EIV +L+N + A
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA- 67
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
++ TPLH A +++ ++L++ V + +R TPL++AA +G ++IV
Sbjct: 68 -----SDSAGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQLEIV 121
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + G TA ++ D+ E
Sbjct: 122 EVLLKHGADVNAQDALGLTAFDISINQGQEDLAE 155
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA D V+IL+ V+ + + N T L++A ANG EIV +L+N A
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNA- 67
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
++ TPLH A +++V++L+K V + +R TPL++A +G EIV
Sbjct: 68 -----SDSAGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQLEIV 121
Query: 255 AEILQNCPESAARQML 270
+L++ + A+ L
Sbjct: 122 EVLLKHGADVNAQDAL 137
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 51/190 (26%), Positives = 80/190 (42%), Gaps = 41/190 (21%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAAA G + R + + + TD T LH+ L +
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEI----------- 54
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + +++ G +PLHLAA GH IVE L L+ G + A
Sbjct: 55 ---VEVLLKNGADV-NASDSAGITPLHLAAYDGHLEIVEVL----------LKHGADVNA 100
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAV----ANG 176
+ TPLH A +++V++L+K + A+ N++ L + N
Sbjct: 101 ------YDRAGWTPLHLAALSGQLEIVEVLLK------HGADVNAQDALGLTAFDISINQ 148
Query: 177 SAEIVAEILQ 186
E +AEILQ
Sbjct: 149 GQEDLAEILQ 158
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA D +IL+ V + + N TPL++AAANG ++IV +L+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 341 GPDGKTALHAAVYTYPTDILERVL 364
G T LH A Y +I+E +L
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLL 92
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 104/262 (39%), Gaps = 33/262 (12%)
Query: 86 LHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVD 145
+H+AA+KG T V LI E GV + N T LH A + VD
Sbjct: 24 IHVAARKGQTDEVRRLI----------ETGVSPT------IQNRFGCTALHLACKFGCVD 67
Query: 146 VVKILIKADP-----------HVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
K L H++ AN+ + + A + +L C +
Sbjct: 68 TAKYLASVGEVHSLWHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVN 127
Query: 195 QMLEKTNE-EQNTPLHEAVRL--RRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
++ + T LH V L ++ +KIL++ P + ++ ETPL A +
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGAS-PTAKDKADETPLXRAXEFRNR 186
Query: 252 EIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS 311
E + P S + L+ N++ N+ LH A+ + DVA +E V N ++
Sbjct: 187 EALDLXXDTVP-SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHT 245
Query: 312 ETPLYMAAANGSVKIVAKILQK 333
PLY++ V + ++LQK
Sbjct: 246 -VPLYLSVRAAXVLLTKELLQK 266
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 18/105 (17%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLHLAAK+GH IVE L L+ G + AR I TPLH A +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVL----------LKHGADVNARDIWG------RTPLHLAATV 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
+++V++L++ V+ + ++ +T +++ NG+ E +AEILQ
Sbjct: 91 GHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 67/131 (51%), Gaps = 19/131 (14%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + + TPL++A G EIV +L++ + AR
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAANG 322
+ + TPLH A + +++ ++L+E Y A+ N++ T ++ NG
Sbjct: 77 DIWGR------TPLHLAATVGHLEIVEVLLE------YGADVNAQDKFGKTAFDISIDNG 124
Query: 323 SVKIVAKILQK 333
+ + +A+ILQK
Sbjct: 125 N-EDLAEILQK 134
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 11/73 (15%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-----ETPLYMAVANGSAEIVAEILQN 260
TPLH A + +++V++L+K + A+ N+ TPL++A G EIV +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLK------HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 261 CPESAARQMLEKT 273
+ A+ KT
Sbjct: 103 GADVNAQDKFGKT 115
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 21/108 (19%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EA G + R + + + D T LH+ R HL +
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAK---GDSPLHLAAKKGHTAIVEFLIVFA 105
VE +L + NA+ G +PLHLAA GH IVE L+ +
Sbjct: 63 ---VEVLLKHGADV----NARDIWGRTPLHLAATVGHLEIVEVLLEYG 103
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 11/88 (12%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAANGSVKIVAKILQK 333
TPLH A + +++ ++L++ + A+ N+ TPL++AA G ++IV +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLK------HGADVNARDIWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 334 CPSPAHEGPDGKTALHAAVYTYPTDILE 361
+ GKTA ++ D+ E
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAE 130
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 64 VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQI 123
V+++L PSLL Q + G PLH + I FL+ + + ++L+ + +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKA--DPHVSYSANRNSETLLYMAVANGSAEIV 181
TP H A + +++VVK L P ++ N+ T L++AV E+
Sbjct: 74 ---------TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVS 123
Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP 241
+++N A+ ++ +K N+ PLH A + + ++++L ++ TP
Sbjct: 124 QFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 242 LYMAVANGSAE 252
L+ A+A G +
Sbjct: 178 LFHALAEGHGD 188
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
N PLH+A V+ L+ + P + +++ L+ +V+ + EI + +L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA--DPHVPYSANRNSETPLYMAVANG 249
+ + ++ TP H A + ++VVK L P + N+ T L++AV
Sbjct: 63 ---NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKK 118
Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANR 309
E+ +++N A+ ++ +K N+ PLH A + S+ + ++L ++
Sbjct: 119 WFEVSQFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 310 NSETPLYMAAANG 322
TPL+ A A G
Sbjct: 173 QGWTPLFHALAEG 185
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 18/159 (11%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + + +TPL++A G EIV +L+N + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAANG 322
+TPLH A + +++ ++L++ Y A+ N++ TPL++AA G
Sbjct: 77 DF------SGSTPLHLAAKRGHLEIVEVLLK------YGADVNADDTIGSTPLHLAADTG 124
Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
++IV +L+ + GKTA ++ D+ E
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D +T LH+ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + + G +PLHLAAK+GH IVE L L+ G + A
Sbjct: 63 ---VEVLLKNGADV-NALDFSGSTPLHLAAKRGHLEIVEVL----------LKYGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ +TPLH A +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 DDTIG------STPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 69/128 (53%), Gaps = 9/128 (7%)
Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES 264
+TPLH A R+ +++V++L+K V + + + TPL++A G EIV +L+ +
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSV 324
A + +TPLH A +++ ++L++ V + ++ +T ++ NG+
Sbjct: 107 NADDTI------GSTPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN- 158
Query: 325 KIVAKILQ 332
+ +A+ILQ
Sbjct: 159 EDLAEILQ 166
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 278 NTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSP 337
+TPLH A R+ +++ ++L++ V + + + TPL++AA G ++IV +L+
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 338 AHEGPDGKTALHAAVYTYPTDILERVL 364
+ G T LH A T +I+E +L
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLL 133
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 64 VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQI 123
V+++L PSLL Q + G PLH + I FL+ + + ++L+ + +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKA--DPHVSYSANRNSETLLYMAVANGSAEIV 181
TP H A + +++VVK L P ++ N+ T L++AV E+
Sbjct: 74 ---------TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVS 123
Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP 241
+++N A+ ++ +K N+ PLH A + + ++++L ++ TP
Sbjct: 124 QFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 242 LYMAVANGSAE 252
L+ A+A G +
Sbjct: 178 LFHALAEGHGD 188
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
N PLH+A V+ L+ + P + +++ L+ +V+ + EI + +L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA--DPHVPYSANRNSETPLYMAVANG 249
+ + ++ TP H A + ++VVK L P + N+ T L++AV
Sbjct: 63 ---NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKK 118
Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANR 309
E+ +++N A+ ++ +K N+ PLH A + S+ + ++L ++
Sbjct: 119 WFEVSQFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 310 NSETPLYMAAANG 322
TPL+ A A G
Sbjct: 173 QGWTPLFHALAEG 185
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ RKL EAA G + R + + + D T LH+ HL +
Sbjct: 14 LGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEI----------V 63
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
++ D+ S +F G +PLHLAA GH IVE L L+ G + A
Sbjct: 64 EVLLKHGADVDASDVF-----GYTPLHLAAYWGHLEIVEVL----------LKNGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ + TPLH A + +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 ------MDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V +A+ TPL++A +G EIV +L++ + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ TPLH A +++ ++L++ V + + + TPL++AA G ++IV
Sbjct: 77 DVF------GYTPLHLAAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
A+ G +PLHLAA GH IVE L L+ G + A + TPLH
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVL----------LKHGADVDASDVFGY------TPLHL 86
Query: 138 AVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQML 197
A +++V++L+K V+ + + + T L++A G EIV +L++ A+
Sbjct: 87 AAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKF 145
Query: 198 EKT 200
KT
Sbjct: 146 GKT 148
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
TPLH A +++V++L+K V +++ T L++A G EIV +L+N
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAE 252
A + + TPLH A + +++V++L+K V + ++ +T +++ NG+ E
Sbjct: 108 A------MDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-E 159
Query: 253 IVAEILQ 259
+AEILQ
Sbjct: 160 DLAEILQ 166
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A +++ ++L++ V +++ TPL++AA G ++IV +L+
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVN 107
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
DG T LH A +I+E +L
Sbjct: 108 AMDSDGMTPLHLAAKWGYLEIVEVLL 133
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 18/159 (11%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V ++ S TPL++A G EIV +L++ + AR
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGS-TPLHLAAWIGHPEIVEVLLKHGADVNAR 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAANG 322
+ + TPLH A +++ ++L++ Y A+ N++ TPL++AA G
Sbjct: 77 ------DTDGWTPLHLAADNGHLEIVEVLLK------YGADVNAQDAYGLTPLHLAADRG 124
Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
++IV +L+ + GKTA ++ D+ E
Sbjct: 125 HLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 18/108 (16%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
+ G +PLHLAA GH IVE L L+ G + A+ + TPLH A
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVL----------LKYGADVNAQDAYGL------TPLHLA 120
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
+++V++L+K V+ + ++ +T +++ NG+ E +AEILQ
Sbjct: 121 ADRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 166
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 72/133 (54%), Gaps = 9/133 (6%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
+++ +TPLH A + ++V++L+K V + + + TPL++A NG EIV +L+
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
+ A+ + TPLH A +++ ++L++ V + ++ +T ++
Sbjct: 103 GADVNAQ------DAYGLTPLHLAADRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155
Query: 321 NGSVKIVAKILQK 333
NG+ + +A+ILQK
Sbjct: 156 NGN-EDLAEILQK 167
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 274 NEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQK 333
+++ +TPLH A + ++ ++L++ V + + + TPL++AA NG ++IV +L+
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 334 CPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
+ G T LH A +I+E +L
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 22/191 (11%)
Query: 64 VEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQI 123
V+++L PSLL Q + G PLH + I FL+ + + ++L+ + +
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 124 LKMTNEEQNTPLHEAVRLRSVDVVKILIKA--DPHVSYSANRNSETLLYMAVANGSAEIV 181
TP H A + +++VVK L P ++ N+ T L++AV E+
Sbjct: 74 ---------TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKKWFEVS 123
Query: 182 AEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETP 241
+++N A+ ++ +K N+ PLH A + + ++++L ++ TP
Sbjct: 124 QFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 177
Query: 242 LYMAVANGSAE 252
L+ A+A G +
Sbjct: 178 LFHALAEGHGD 188
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 12/193 (6%)
Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQS 191
N PLH+A V+ L+ + P + +++ L+ +V+ + EI + +L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKA--DPHVPYSANRNSETPLYMAVANG 249
+ + ++ TP H A + ++VVK L P + N+ T L++AV
Sbjct: 63 ---NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV-TCLHLAVGKK 118
Query: 250 SAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANR 309
E+ +++N A+ ++ +K N+ PLH A + S+ + ++L ++
Sbjct: 119 WFEVSQFLIEN---GASVRIKDKFNQ---IPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172
Query: 310 NSETPLYMAAANG 322
TPL+ A A G
Sbjct: 173 QGWTPLFHALAEG 185
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R R D V+IL+ V + + + TPL++A NG EIV +L+N + A
Sbjct: 18 LLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA- 75
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ TPL A +++ ++L++ V + + TPL++AA G ++IV
Sbjct: 76 -----VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
TPLH A +++V++L+K V+ + + T L +A G EIV +L+N
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAE 252
A M E +TPLH A +++V++L+K V + ++ +T +++ NG+ E
Sbjct: 108 ANDM------EGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGN-E 159
Query: 253 IVAEILQ 259
+AEILQ
Sbjct: 160 DLAEILQ 166
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
+A G +PLHLAA GH IVE L L+ G + A M TPL A
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVL----------LKNGADVNAVDHAGM------TPLRLA 87
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLE 198
+++V++L+K V+ + + T L++A G EIV +L+N A+
Sbjct: 88 ALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG 146
Query: 199 KT 200
KT
Sbjct: 147 KT 148
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D T LH+ HL +
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + +A G +PL LAA GH IVE L L+ G + A
Sbjct: 63 ---VEVLLKNGADVNAVDHA-GMTPLRLAALFGHLEIVEVL----------LKNGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ E +TPLH A +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 NDM------EGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A +++ ++L++ V + + TPL +AA G ++IV +L+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
+G T LH A +I+E +L
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLL 133
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
+A G +PLHLAA GH IVE L L+ G + A I+ +TPLH A
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVL----------LKHGADVNAIDIMG------STPLHLA 87
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLE 198
+ +++V++L+K V+ + + +T L++A G EIV +L++ A+
Sbjct: 88 ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 199 KT 200
KT
Sbjct: 147 KT 148
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 77/154 (50%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + + + TPL++A G EIV +L++ + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
++ +TPLH A + +++ ++L++ V + + +TPL++AA G ++IV
Sbjct: 77 DIM------GSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + TD T LH+ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + + G +PLHLAA GH IVE L L+ G + A
Sbjct: 63 ---VEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVL----------LKHGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ +TPLH A + +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 ------VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL+ V+ + + + T L++A G EIV +L++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
++ +TPLH A + +++V++L+K V + + +TPL++A G EIV
Sbjct: 77 DIM------GSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIV 129
Query: 255 AEILQNCPESAARQMLEKT 273
+L++ + A+ KT
Sbjct: 130 EVLLKHGADVNAQDKFGKT 148
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKI 222
+ ++ L++A+ + + E+++ A L N Q TPLH AV + ++ +
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 223 LIKA--DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTP 280
L+ A DP + + TPL++A G V + Q+C +L+ TN +T
Sbjct: 61 LLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 117
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC 334
LH A + + ++L+ V N T L++A + +V+ +L KC
Sbjct: 118 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KC 170
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 224 IKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHE 283
+K D N +TPL++AV EI +L + R NTPLH
Sbjct: 28 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF------RGNTPLHL 81
Query: 284 AVRLRSVDVAKILIEA--DPH---VPYSANRNSETPLYMAAANGSVKIVAKILQ-KCPSP 337
A + +L ++ PH + + N N T L++A+ +G + IV ++
Sbjct: 82 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 141
Query: 338 AHEGPDGKTALHAAVYTYPTDILERVL 364
A E +G+TALH AV D++ +L
Sbjct: 142 AQEPCNGRTALHLAVDLQNPDLVSLLL 168
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 236 RNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI 295
+ ++ L++A+ + + E+++ A L N Q TPLH AV ++A+
Sbjct: 3 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 296 LIEA--DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSP------AHEGPDGKTA 347
L+ A DP + + TPL++A G + V + Q C +P +G T
Sbjct: 61 LLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 117
Query: 348 LH-AAVYTY 355
LH A+++ Y
Sbjct: 118 LHLASIHGY 126
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 76 FQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
FQ N + +PLHLA I E L L G + R NTPL
Sbjct: 37 FQNNLQ-QTPLHLAVITNQPEIAEAL----------LGAGCDPELRDF------RGNTPL 79
Query: 136 HEAVRLRSVDVVKILIKA--DPHVSY---SANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
H A + V +L ++ PH+ + N N T L++A +G IV E+L +
Sbjct: 80 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV-ELLVSLGA 138
Query: 191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHV 230
Q E N T LH AV L+ D+V +L+K V
Sbjct: 139 DVNAQ--EPCNGR--TALHLAVDLQNPDLVSLLLKCGADV 174
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 73 SLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQN 132
S+L N G + LHLA+ G+ IVE L+ G + A++
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSL----------GADVNAQEPCN-----GR 149
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVS 158
T LH AV L++ D+V +L+K V+
Sbjct: 150 TALHLAVDLQNPDLVSLLLKCGADVN 175
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V +++ TPL++A G EIV +L+N + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
L T PLH A ++V ++L++ V + + N TPL++AA G ++IV
Sbjct: 77 DSLGVT------PLHLAADRGHLEVVEVLLKNGADVN-ANDHNGFTPLHLAANIGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + +D + T LH+ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + ++ G +PLHLAA +GH +VE L L+ G + A
Sbjct: 63 ---VEVLLKNGADV-NADDSLGVTPLHLAADRGHLEVVEVL----------LKNGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ TPLH A + +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 ------NDHNGFTPLHLAANIGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
TPLH A +++V++L+K V+ + + T L++A G E+V +L+N
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAE 252
A + TPLH A + +++V++L+K V + ++ +T +++ NG+ E
Sbjct: 108 A------NDHNGFTPLHLAANIGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-E 159
Query: 253 IVAEILQ 259
+AEILQ
Sbjct: 160 DLAEILQ 166
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A +++ ++L++ V + + TPL++AA G +++V +L+
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 339 HEGPDGKTALHAAVYTYPTDILERVL 364
+G T LH A +I+E +L
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLL 133
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D T LH+ + HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
+E +L + ++ G +PLHLAA +GH IVE L L+ G + A
Sbjct: 63 ---IEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVL----------LKYGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ + TPLH A +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 ------MDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 24/162 (14%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSE---TPLYMAVANGSAEIVAEILQNCPES 264
L EA R + D V+IL+ V N N TPL++ V NG EI+ +L+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADV----NANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAA 319
A +++ TPLH A +++ ++L++ Y A+ N+ TPL++AA
Sbjct: 74 NA------SDKSGWTPLHLAAYRGHLEIVEVLLK------YGADVNAMDYQGYTPLHLAA 121
Query: 320 ANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+G ++IV +L+ + GKTA ++ D+ E
Sbjct: 122 EDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
TPLH V ++++++L+K V +++++ TPL++A G EIV +L+ +
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAA 320
A + + TPLH A +++ ++L++ Y A+ N++ T ++
Sbjct: 108 A------MDYQGYTPLHLAAEDGHLEIVEVLLK------YGADVNAQDKFGKTAFDISID 155
Query: 321 NGSVKIVAKILQK 333
NG+ + +A+ILQK
Sbjct: 156 NGN-EDLAEILQK 167
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSE---TPLYMAAANGSVKIVAKILQKCPSP 337
L EA R D +IL+ V N N TPL++ NG ++I+ +L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV----NANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 338 AHEGPDGKTALHAAVYTYPTDILERVL 364
G T LH A Y +I+E +L
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVLL 100
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 18/105 (17%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLHLAAK+GH IVE L L+ G + A I TPLH A +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVL----------LKHGADVNASDIWG------RTPLHLAATV 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
+++V++L++ V+ + ++ +T +++ NG+ E +AEILQ
Sbjct: 91 GHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
TPLH A + +++V++L+K V +++ TPL++A G EIV +L+ +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 266 ARQMLEKT 273
A+ KT
Sbjct: 108 AQDKFGKT 115
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A + +++ ++L++ V +++ TPL++AA G ++IV +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 339 HEGPDGKTALHAAVYTYPTDILE 361
+ GKTA ++ D+ E
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAE 130
Score = 32.0 bits (71), Expect = 0.95, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EA G + R + + + D T LH+ R HL +
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEI----------V 63
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFA 105
++ D+ S ++ G +PLHLAA GH IVE L+ +
Sbjct: 64 EVLLKHGADVNASDIW-----GRTPLHLAATVGHLEIVEVLLEYG 103
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 20/116 (17%)
Query: 72 PSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQ 131
PSL+ + +G S +HLAA+ GHT+IV +LI A Q +D M ++
Sbjct: 102 PSLI---DGEGCSCIHLAAQFGHTSIVAYLI--AKGQDVD--------------MMDQNG 142
Query: 132 NTPL-HEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
TPL A R SVD ++L+ + V+ + T L+ AV G+ +++ +L+
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ- 259
++E T LH A R+D+VK I V + TPL+ A G +V ++++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 260 ------------NCPESAAR--------------QMLEKTNEEQNTPL-HEAVRLRSVDV 292
+C AA+ Q ++ ++ TPL A R SVD
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 293 AKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA 351
++L+ + V + T L+ A G+ +++ +L+ + + G++AL A
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 12/153 (7%)
Query: 110 IDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSET 167
IDL + S + ++ + +TPLH A R + +V L+K ADP + + +
Sbjct: 55 IDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCS 111
Query: 168 LLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPL-HEAVRLRRVDVVKILIKA 226
+++A G IVA ++ A Q ++ ++ TPL A R VD ++L+
Sbjct: 112 CIHLAAQFGHTSIVAYLI------AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF 165
Query: 227 DPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
+ V + T L+ AV G+ +++ +L+
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 257 ILQNCPESA-ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPL 315
I + C E A + + ++E T LH A +D+ K I V + TPL
Sbjct: 21 IYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPL 80
Query: 316 YMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIVRGTFKPQEI 375
+ A G + +V ++++ P+ +G + +H A T I+ LI +G Q++
Sbjct: 81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA-YLIAKG----QDV 135
Query: 376 QELSKN 381
+ +N
Sbjct: 136 DMMDQN 141
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
N E + L EA + V+ VK L TPL+ A +V +LQ+
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
+ A+ ++ PLH A +VA++L++ V A+ TPL+ AAA
Sbjct: 67 GADVHAK------DKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAA 119
Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTAL 348
G +I +LQ P + DG T L
Sbjct: 120 KGKYEICKLLLQHGADPTKKNRDGNTPL 147
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 32/180 (17%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
N++ D L AAK G V+ L + D+E Q+TPLH
Sbjct: 6 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE---------------GRQSTPLHF 50
Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
A V VV+ L++ AD H + ++ L+ A + G E VAE+L
Sbjct: 51 AAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYGHYE-VAELL-----VKHGA 101
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
++ + + TPLHEA + ++ K+L++ AD P NR+ TPL + V +G +I
Sbjct: 102 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDL-VKDGDTDI 157
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
N E + L EA + V+ VK L TPL+ A +V +LQ+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
+ A+ ++ PLH A +VA++L++ V A+ TPL+ AAA
Sbjct: 65 GADVHAK------DKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAA 117
Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTAL 348
G +I +LQ P + DG T L
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPL 145
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 32/180 (17%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
N++ D L AAK G V+ L + D+E Q+TPLH
Sbjct: 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE---------------GRQSTPLHF 48
Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
A V VV+ L++ AD H + ++ L+ A + G E VAE+L
Sbjct: 49 AAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYGHYE-VAELLVK-----HGA 99
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
++ + + TPLHEA + ++ K+L++ AD P NR+ TPL + V +G +I
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDL-VKDGDTDI 155
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
+A G +PLHLAA GH IVE L L+ G + A I +TPLH A
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVL----------LKHGADVNAIDIXG------STPLHLA 87
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLE 198
+ +++V++L+K V+ + + +T L++A G EIV +L++ A+
Sbjct: 88 ALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 199 KT 200
KT
Sbjct: 147 KT 148
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 51/186 (27%), Positives = 84/186 (45%), Gaps = 33/186 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + TD T LH+ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + + G +PLHLAA GH IVE L L+ G + A
Sbjct: 63 ---VEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVL----------LKHGADVNA 108
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
+ +TPLH A + +++V++L+K V+ + ++ +T +++ NG+ E
Sbjct: 109 ------VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-ED 160
Query: 181 VAEILQ 186
+AEILQ
Sbjct: 161 LAEILQ 166
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 8/154 (5%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + + + TPL++A G EIV +L++ + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ +TPLH A + +++ ++L++ V + + +TPL++AA G ++IV
Sbjct: 77 DI------XGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIV 129
Query: 328 AKILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL+ V+ + + + T L++A G EIV +L++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI 76
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
+ +TPLH A + +++V++L+K V + + +TPL++A G EIV
Sbjct: 77 DI------XGSTPLHLAALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIV 129
Query: 255 AEILQNCPESAARQMLEKT 273
+L++ + A+ KT
Sbjct: 130 EVLLKHGADVNAQDKFGKT 148
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
N E + L EA + V+ VK L TPL+ A +V +LQ+
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAA 320
+ A+ ++ PLH A +VA++L++ V A+ TPL+ AAA
Sbjct: 69 GADVHAK------DKGGLVPLHNACSYGHYEVAELLVKHGA-VVNVADLWKFTPLHEAAA 121
Query: 321 NGSVKIVAKILQKCPSPAHEGPDGKTAL 348
G +I +LQ P + DG T L
Sbjct: 122 KGKYEICKLLLQHGADPTKKNRDGNTPL 149
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 32/180 (17%)
Query: 78 ANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHE 137
N++ D L AAK G V+ L + D+E Q+TPLH
Sbjct: 8 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE---------------GRQSTPLHF 52
Query: 138 AVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQ 195
A V VV+ L++ AD H + ++ L+ A + G E VAE+L
Sbjct: 53 AAGYNRVSVVEYLLQHGADVH---AKDKGGLVPLHNACSYGHYE-VAELL-----VKHGA 103
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
++ + + TPLHEA + ++ K+L++ AD P NR+ TPL + V +G +I
Sbjct: 104 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDL-VKDGDTDI 159
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 163 RNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKI 222
+ ++ L++A+ + + E+++ A L N Q TPLH AV + ++ +
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 223 LIKA--DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTP 280
L+ A DP + + TPL++A G V + Q+C +L+ TN +T
Sbjct: 64 LLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKC 334
LH A + + ++L+ V N T L++A + +V+ +L KC
Sbjct: 121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL-KC 173
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 12/147 (8%)
Query: 224 IKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHE 283
+K D N +TPL++AV EI +L + R NTPLH
Sbjct: 31 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF------RGNTPLHL 84
Query: 284 AVRLRSVDVAKILIEA--DPH---VPYSANRNSETPLYMAAANGSVKIVAKILQ-KCPSP 337
A + +L ++ PH + + N N T L++A+ +G + IV ++
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 338 AHEGPDGKTALHAAVYTYPTDILERVL 364
A E +G+TALH AV D++ +L
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLL 171
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 14/129 (10%)
Query: 236 RNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI 295
+ ++ L++A+ + + E+++ A L N Q TPLH AV ++A+
Sbjct: 6 EDGDSFLHLAIIHEEKALTMEVIRQVKGDLA--FLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 296 LIEA--DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSP------AHEGPDGKTA 347
L+ A DP + + TPL++A G + V + Q C +P +G T
Sbjct: 64 LLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120
Query: 348 LH-AAVYTY 355
LH A+++ Y
Sbjct: 121 LHLASIHGY 129
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 76 FQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
FQ N + +PLHLA I E L L G + R NTPL
Sbjct: 40 FQNNLQ-QTPLHLAVITNQPEIAEAL----------LGAGCDPELRDF------RGNTPL 82
Query: 136 HEAVRLRSVDVVKILIKA--DPHVSY---SANRNSETLLYMAVANGSAEIVAEILQNCPQ 190
H A + V +L ++ PH+ + N N T L++A +G IV E+L +
Sbjct: 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIV-ELLVSLGA 141
Query: 191 SAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHV 230
Q E N T LH AV L+ D+V +L+K V
Sbjct: 142 DVNAQ--EPCN--GRTALHLAVDLQNPDLVSLLLKCGADV 177
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 73 SLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQN 132
S+L N G + LHLA+ G+ IVE L+ G + A++
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSL----------GADVNAQEPCN-----GR 152
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVS 158
T LH AV L++ D+V +L+K V+
Sbjct: 153 TALHLAVDLQNPDLVSLLLKCGADVN 178
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 18/150 (12%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+ILI V + + TPL++A +G EIV +L++ + A
Sbjct: 18 LLEAARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS-----ETPLYMAAANG 322
+ TPLH A +++ ++L++ Y A+ N+ TPL++AA G
Sbjct: 77 DVY------GFTPLHLAAMTGHLEIVEVLLK------YGADVNAFDMTGSTPLHLAADEG 124
Query: 323 SVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
++IV +L+ + GKTA ++
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+ILI V+ + + T L++A +G EIV +L++ A
Sbjct: 18 LLEAARAGQDDEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS-----ETPLYMAVANG 249
+ TPLH A +++V++L+K Y A+ N+ TPL++A G
Sbjct: 77 DVY------GFTPLHLAAMTGHLEIVEVLLK------YGADVNAFDMTGSTPLHLAADEG 124
Query: 250 SAEIVAEILQNCPESAARQMLEKT 273
EIV +L+ + A+ KT
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKT 148
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLHLAA GH IVE L L+ G + A + TPLH A
Sbjct: 47 GLTPLHLAAVSGHLEIVEVL----------LKHGADVDAADVYGF------TPLHLAAMT 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKT 200
+++V++L+K V+ + + T L++A G EIV +L+ A+ KT
Sbjct: 91 GHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKT 148
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 32/180 (17%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D T LH+ + HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAA 120
VE +L + A+ G +PLHLAA GH IVE L+ + A
Sbjct: 63 ---VEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKYG-------------AD 105
Query: 121 RQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEI 180
MT +TPLH A +++V++L+K V+ + ++ +T +++ NG+ ++
Sbjct: 106 VNAFDMTG---STPLHLAADEGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 18/105 (17%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLHLAAK+GH IVE L L+ G + A ++ TPLH A +
Sbjct: 47 GVTPLHLAAKRGHLEIVEVL----------LKHGADVNA------SDSWGRTPLHLAATV 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
+++V++L++ V+ + ++ +T +++ NG+ E +AEILQ
Sbjct: 91 GHLEIVEVLLEYGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 206 TPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPE 263
TPLH A + +++V++L+K AD + S R TPL++A G EIV +L+ +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR---TPLHLAATVGHLEIVEVLLEYGAD 105
Query: 264 SAARQMLEKT 273
A+ KT
Sbjct: 106 VNAQDKFGKT 115
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 279 TPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS 336
TPLH A + +++ ++L++ AD + S R TPL++AA G ++IV +L+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGR---TPLHLAATVGHLEIVEVLLEYGAD 105
Query: 337 PAHEGPDGKTALHAAVYTYPTDILE 361
+ GKTA ++ D+ E
Sbjct: 106 VNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EA G + R + + + D T LH+ R HL +
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFA 105
VE +L + +++ G +PLHLAA GH IVE L+ +
Sbjct: 63 ---VEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLEYG 103
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 31/134 (23%)
Query: 76 FQANAKGDSPLHLAAKKGHTAIVEFLI---------VFANRQPID--------------L 112
F + G SPLHLAA+ GH + E L+ +R P+ L
Sbjct: 28 FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL 87
Query: 113 ERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMA 172
+ G + A+ +LKM T LH A +VV++LIK V ++ ++ +T ++
Sbjct: 88 KHGADVNAKDMLKM------TALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDIS 140
Query: 173 VANGSAEIVAEILQ 186
+ NG+ E +AEILQ
Sbjct: 141 IDNGN-EDLAEILQ 153
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 11/128 (8%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSA-NRNSETPLYMAVANGSAEIVAEILQNCPES 264
+PLH A + ++L++A V A + TPL+MA + G A IV +L++ +
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 265 AARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSV 324
A+ ML+ T LH A +V ++LI+ V ++ ++ +T ++ NG+
Sbjct: 94 NAKDMLKM------TALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGN- 145
Query: 325 KIVAKILQ 332
+ +A+ILQ
Sbjct: 146 EDLAEILQ 153
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 18/106 (16%)
Query: 81 KGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVR 140
KG++PLHLAA H IVE L L+ G + A + + +TPLH A
Sbjct: 46 KGNTPLHLAADYDHLEIVEVL----------LKHGADVNAH------DNDGSTPLHLAAL 89
Query: 141 LRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
+++V++L+K V+ + ++ +T +++ NG+ E +AEILQ
Sbjct: 90 FGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL+ V+ + +R T L++A EIV +L++ A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
+ + +TPLH A +++V++L+K V + ++ +T +++ NG+ E +
Sbjct: 77 ------DNDGSTPLHLAALFGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDL 128
Query: 255 AEILQ 259
AEILQ
Sbjct: 129 AEILQ 133
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
+ + NTPLH A +++V++L+K V N S TPL++A G EIV +L++
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS-TPLHLAALFGHLEIVEVLLKH 102
Query: 261 CPESAARQMLEKT 273
+ A+ KT
Sbjct: 103 GADVNAQDKFGKT 115
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + +R TPL++A EIV +L++ + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ + +TPLH A +++ ++L++ V + ++ +T ++ NG+ + +
Sbjct: 77 ------DNDGSTPLHLAALFGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDL 128
Query: 328 AKILQK 333
A+ILQK
Sbjct: 129 AEILQK 134
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 274 NEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQK 333
+ + NTPLH A +++ ++L++ V N S TPL++AA G ++IV +L+
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS-TPLHLAALFGHLEIVEVLLKH 102
Query: 334 CPSPAHEGPDGKTALHAAVYTYPTDILE 361
+ GKTA ++ D+ E
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D NT LH+ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI 102
VE +L + N G +PLHLAA GH IVE L+
Sbjct: 63 ---VEVLLKHGADVNAHDN-DGSTPLHLAALFGHLEIVEVLL 100
Score = 32.0 bits (71), Expect = 0.99, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ V + +R TPL++AA ++IV +L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH 76
Query: 341 GPDGKTALHAAVYTYPTDILERVL 364
DG T LH A +I+E +L
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLL 100
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
+++ NTPLH A + + VK L+ V + +++ TPL++A NG AEIV +L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 261 CPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKIL 296
+ AR +++ NTP H A + ++ K+L
Sbjct: 65 GADVNAR------SKDGNTPEHLAKKNGHHEIVKLL 94
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 17/100 (17%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G++PLH AAK GH V+ L L +G + AR +++ NTPLH A +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKL----------LSKGADVNAR------SKDGNTPLHLAAKN 52
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIV 181
++VK+L+ V+ + +++ T ++A NG EIV
Sbjct: 53 GHAEIVKLLLAKGADVN-ARSKDGNTPEHLAKKNGHHEIV 91
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 128 NEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQN 187
+++ NTPLH A + + VK L+ V+ + +++ T L++A NG AEIV +L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 188 CPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKIL 223
AR +++ NTP H A + ++VK+L
Sbjct: 65 GADVNAR------SKDGNTPEHLAKKNGHHEIVKLL 94
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 274 NEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQK 333
+++ NTPLH A + + K L+ V + +++ TPL++AA NG +IV +L K
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 334 CPSPAHEGPDGKTALHAA 351
DG T H A
Sbjct: 65 GADVNARSKDGNTPEHLA 82
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 16/69 (23%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G++PLHLAAK GH IV+ L L +G + AR +++ NTP H A +
Sbjct: 42 GNTPLHLAAKNGHAEIVKLL----------LAKGADVNAR------SKDGNTPEHLAKKN 85
Query: 142 RSVDVVKIL 150
++VK+L
Sbjct: 86 GHHEIVKLL 94
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 307 ANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVLIV 366
+++ TPL+ AA NG + V K+L K DG T LH A +I+ ++L+
Sbjct: 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV-KLLLA 63
Query: 367 RG 368
+G
Sbjct: 64 KG 65
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLHLAA GH IVE L L+ G + A T TPLH A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVL----------LKNGADVNA------TGNTGRTPLHLAAWA 90
Query: 142 RSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
+++V++L+K V+ + ++ +T +++ NG+ E +AEILQ
Sbjct: 91 DHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL V+ + + T L++A G EIV +L+N A
Sbjct: 18 LLEAARAGQDDEVRILTANGADVN-ANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA- 75
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
T TPLH A +++V++L+K V + ++ +T +++ NG+ E +
Sbjct: 76 -----TGNTGRTPLHLAAWADHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDL 128
Query: 255 AEILQ 259
AEILQ
Sbjct: 129 AEILQ 133
Score = 35.8 bits (81), Expect = 0.061, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES 264
+TPLH A L +++V++L+K V + N TPL++A EIV +L++ +
Sbjct: 48 HTPLHLAAMLGHLEIVEVLLKNGADVNATGN-TGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 265 AARQMLEKT 273
A+ KT
Sbjct: 107 NAQDKFGKT 115
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 15/102 (14%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D +T LH+ M HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI 102
VE +L + N G +PLHLAA H IVE L+
Sbjct: 63 ---VEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLL 100
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 278 NTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSP 337
+TPLH A L +++ ++L++ V + N TPL++AA ++IV +L+
Sbjct: 48 HTPLHLAAMLGHLEIVEVLLKNGADVNATGN-TGRTPLHLAAWADHLEIVEVLLKHGADV 106
Query: 338 AHEGPDGKTALHAAVYTYPTDILE 361
+ GKTA ++ D+ E
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAE 130
Score = 33.1 bits (74), Expect = 0.39, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRN-SETPLYMAAANGSVKIVAKILQKCPSPAH 339
L EA R D +IL V +AN TPL++AA G ++IV +L+
Sbjct: 18 LLEAARAGQDDEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 340 EGPDGKTALHAAVYTYPTDILERVL 364
G G+T LH A + +I+E +L
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLL 100
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + + TPLY+A A+G EIV +L+N + A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ TPLH A + +++A++L++ V + ++ +T ++ NG+ + +
Sbjct: 77 DAI------GFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGN-EDL 128
Query: 328 AKILQK 333
A+ILQK
Sbjct: 129 AEILQK 134
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL+ V+ + + T LY+A A+G EIV +L+N A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 195 QMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIV 254
+ TPLH A + +++ ++L+K V + ++ +T +++ NG+ E +
Sbjct: 77 DAI------GFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGN-EDL 128
Query: 255 AEILQ 259
AEILQ
Sbjct: 129 AEILQ 133
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 21/111 (18%)
Query: 79 NAK---GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPL 135
NAK G +PL+LA GH IVE L L+ G + A + TPL
Sbjct: 41 NAKDEYGLTPLYLATAHGHLEIVEVL----------LKNGADVNAVDAIGF------TPL 84
Query: 136 HEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
H A + +++ ++L+K V+ + ++ +T +++ NG+ E +AEILQ
Sbjct: 85 HLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGN-EDLAEILQ 133
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 22/84 (26%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G +PLH A GH +VE L+ + ++ T + ++PLH+A +
Sbjct: 43 GWTPLHEACNHGHLKVVELLL----------------QHKALVNTTGYQNDSPLHDAAKN 86
Query: 142 RSVDVVKILIKADPHVSYSANRNS 165
VD+VK+L+ SY A+RN+
Sbjct: 87 GHVDIVKLLL------SYGASRNA 104
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 200 TNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEI 257
TN T LH A + V+ L++ +DP+V A TPL+ A +G ++V +
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---TPLHEACNHGHLKVVELL 62
Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNS 311
LQ+ + ++ T + ++PLH+A + VD+ K+L+ Y A+RN+
Sbjct: 63 LQH------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS------YGASRNA 104
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 127 TNEEQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEI 184
TN T LH A + V+ L++ +DP+V A T L+ A +G ++V +
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---TPLHEACNHGHLKVVELL 62
Query: 185 LQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS 238
LQ+ + ++ T + ++PLH+A + VD+VK+L+ Y A+RN+
Sbjct: 63 LQH------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS------YGASRNA 104
Score = 36.2 bits (82), Expect = 0.049, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 17/107 (15%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
N +G++ LH+A+ KG VE+L L+ G + + + TPLHEA
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYL----------LQNGSDPNVK------DHAGWTPLHEA 50
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEIL 185
+ VV++L++ V+ + +N ++ L+ A NG +IV +L
Sbjct: 51 CNHGHLKVVELLLQHKALVNTTGYQN-DSPLHDAAKNGHVDIVKLLL 96
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 5 LYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXXXXFV 64
L+ A+ KGDI + ++ + V D T LH HL V
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLK---------------V 58
Query: 65 EQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVF-ANRQPIDL 112
++L +L+ + DSPLH AAK GH IV+ L+ + A+R +++
Sbjct: 59 VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 24/108 (22%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQN---TPLHEA 138
G +PLHLAA+ GH IVE L L+ G + N E N TPLH A
Sbjct: 47 GLTPLHLAAQLGHLEIVEVL----------LKYGAD---------VNAEDNFGITPLHLA 87
Query: 139 VRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
+++V++L+K V+ + ++ +T +++ NG+ E +AEILQ
Sbjct: 88 AIRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 133
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
Query: 201 NEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSE-----TPLYMAVANGSAEIVA 255
+E+ TPLH A +L +++V++L+K Y A+ N+E TPL++A G EIV
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLK------YGADVNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 256 EILQNCPESAARQMLEKT 273
+L++ + A+ KT
Sbjct: 98 VLLKHGADVNAQDKFGKT 115
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 274 NEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSE-----TPLYMAAANGSVKIVA 328
+E+ TPLH A +L +++ ++L++ Y A+ N+E TPL++AA G ++IV
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLK------YGADVNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 329 KILQKCPSPAHEGPDGKTALHAAVYTYPTDILE 361
+L+ + GKTA ++ D+ E
Sbjct: 98 VLLKHGADVNAQDKFGKTAFDISIDNGNEDLAE 130
Score = 35.4 bits (80), Expect = 0.081, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 128 NEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSE-----TLLYMAVANGSAEIVA 182
+E+ TPLH A +L +++V++L+K Y A+ N+E T L++A G EIV
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLK------YGADVNAEDNFGITPLHLAAIRGHLEIVE 97
Query: 183 EILQNCPQSAARQMLEKT 200
+L++ A+ KT
Sbjct: 98 VLLKHGADVNAQDKFGKT 115
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+ +KL EAA G + R + + + D T LH+ HL +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEI----------- 62
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI 102
VE +L + + N G +PLHLAA +GH IVE L+
Sbjct: 63 ---VEVLLKYGADVNAEDNF-GITPLHLAAIRGHLEIVEVLL 100
Score = 28.9 bits (63), Expect = 7.6, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ V + + + TPL++AA G ++IV +L+ E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 341 GPDGKTALHAAVYTYPTDILERVL 364
G T LH A +I+E +L
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLL 100
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
TPL A A+G +V +LQN A Q+L K E + L A D+ K+L++
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQN---GADPQLLGKGRE---SALSLACSKGYTDIVKMLLDC 107
Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
V + N TPL A VK V +L+ P E G ++ AV
Sbjct: 108 GVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 159
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
++ T+EE TPL A ++ VV+ L++ ADP + + E+ L +A + G +I
Sbjct: 44 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL---LGKGRESALSLACSKGYTDI 100
Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
V ++L +C + + + TPL AV V K+L+E ADP + + NS
Sbjct: 101 V-KMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 154
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 24/118 (20%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAAR--------QILKM---- 126
+ +G +PL AA G A+VEFL+ P L +G ESA I+KM
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 107
Query: 127 ---TNE---EQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANG 176
NE TPL AV V VK+L++ ADP + + NS L AVA G
Sbjct: 108 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL---AVALG 162
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 313 TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
TPL AAA+G + +V +LQ P G ++AL A TDI++ +L
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 105
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
TPL A A+G +V +LQN A Q+L K E + L A D+ K+L++
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQN---GADPQLLGKGRE---SALSLACSKGYTDIVKMLLDC 89
Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
V + N TPL A VK V +L+ P E G ++ AV
Sbjct: 90 GVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 141
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
++ T+EE TPL A ++ VV+ L++ ADP + + E+ L +A + G +I
Sbjct: 26 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL---LGKGRESALSLACSKGYTDI 82
Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
V ++L +C + + + TPL AV V K+L+E ADP + + NS
Sbjct: 83 V-KMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 136
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 53/120 (44%), Gaps = 24/120 (20%)
Query: 77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAAR--------QILKM-- 126
+ +G +PL AA G A+VEFL+ P L +G ESA I+KM
Sbjct: 29 HTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSKGYTDIVKMLL 87
Query: 127 -----TNE---EQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETLLYMAVANG 176
NE TPL AV V VK+L++ ADP + + NS L AVA G
Sbjct: 88 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL---AVALG 144
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 313 TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
TPL AAA+G + +V +LQ P G ++AL A TDI++ +L
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 87
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 240 TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEA 299
TPL A A+G +V +LQN A Q+L K E + L A D+ K+L++
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQN---GADPQLLGKGRE---SALSLACSKGYTDIVKMLLDC 91
Query: 300 DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAV 352
V + N TPL A VK V +L+ P E G ++ AV
Sbjct: 92 GVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 196 MLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVANGSAEI 253
++ T+EE TPL A ++ VV+ L++ ADP + + E+ L +A + G +I
Sbjct: 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL---LGKGRESALSLACSKGYTDI 84
Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE--ADPHVPYSANRNS 311
V ++L +C + + + TPL AV V K+L+E ADP + + NS
Sbjct: 85 V-KMLLDCGVD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS 138
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 21/110 (19%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAAR--------QILKM---- 126
+ +G +PL AA G A+VEFL+ P L +G ESA I+KM
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Query: 127 ---TNE---EQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSANRNSETL 168
NE TPL AV V VK+L++ ADP + + NS L
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDL 141
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 313 TPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAAVYTYPTDILERVL 364
TPL AAA+G + +V +LQ P G ++AL A TDI++ +L
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 89
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 31/156 (19%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRN-------------SETPLYMAVANGSAE 252
T LH A+ R +V +L++ V +AN + E PL +A
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 253 IVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL--RSVDVAK---------ILIEADP 301
IV +LQN + A + + NT LH V + +VD K +++ A
Sbjct: 163 IVKFLLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKL 219
Query: 302 H----VPYSANRNSETPLYMAAANGSVKIVAKILQK 333
H + NR TPL +AA++G + ++A ILQ+
Sbjct: 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRN-------------SETPLYMAAANGSVK 325
T LH A+ R+ + +L+E V +AN + E PL +AA +
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 326 IVAKILQKCPSPAH---EGPDGKTALHAAV 352
IV +LQ PA G T LHA V
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALV 192
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 63/155 (40%), Gaps = 31/155 (20%)
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRN-------------SETLLYMAVANGSAE 179
T LH A+ R+ +V +L++ V +AN + E L +A
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 180 IVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRL--RRVDVVK--------ILI---KA 226
IV +LQN Q A + + NT LH V + VD K ILI K
Sbjct: 163 IVKFLLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEILILGAKL 219
Query: 227 DPHVPYS--ANRNSETPLYMAVANGSAEIVAEILQ 259
P + NR TPL +A ++G ++A ILQ
Sbjct: 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 38/210 (18%)
Query: 159 YSANRNSETLLYMAVANGSAEIVAEIL--------QNCPQSAARQMLEKTNEEQNTPLHE 210
Y+ +T L AV N + A IL PQ ++ LH
Sbjct: 42 YTEGSTGKTCLXKAVLNLKDGVNACILPLLQIDRDSGNPQPLVNAQCTDDYYRGHSALHI 101
Query: 211 AVRLRRVDVVKILIKADPHVPYSANRN------------SETPLYMAVANGSAEIVAEIL 258
A+ R + VK+L++ +V A E PL +A ++V+ +L
Sbjct: 102 AIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDVVSYLL 161
Query: 259 QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI---------LIEAD----PHVPY 305
+N + A+ L+ T+ + NT LH V + I L++A P V
Sbjct: 162 ENPHQPAS---LQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQL 218
Query: 306 SANRNSE--TPLYMAAANGSVKIVAKILQK 333
RN + TPL +AA G ++I ILQ+
Sbjct: 219 EDIRNLQDLTPLKLAAKEGKIEIFRHILQR 248
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 30/155 (19%)
Query: 132 NTPLHEAVRLRSVDVVKILIKADPHVSYSA-----NRNSETLLY-------MAVANGSAE 179
++ LH A+ RS+ VK+L++ +V A + T Y +A +
Sbjct: 96 HSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWD 155
Query: 180 IVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKI---------LIKAD--- 227
+V+ +L+N Q A+ L+ T+ + NT LH V + I L++A
Sbjct: 156 VVSYLLENPHQPAS---LQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARL 212
Query: 228 -PHVPYSANRNSE--TPLYMAVANGSAEIVAEILQ 259
P V RN + TPL +A G EI ILQ
Sbjct: 213 CPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQ 247
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 37.7 bits (86), Expect = 0.015, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 270 LEKTNEEQNTPLHEAVRLRSVDVAKILI--EADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ +T E PLH A +++ + L+ AD + P +++ TPL A G V V
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP---DKHHITPLLSAVYEGHVSCV 84
Query: 328 AKILQKCPSPAHEGPDGKTALHA 350
+L K +GPDG TAL A
Sbjct: 85 KLLLSKGADKTVKGPDGLTALEA 107
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 6/42 (14%)
Query: 67 ILDLCPSLL-FQANA-----KGDSPLHLAAKKGHTAIVEFLI 102
LD +LL FQA+ +G+ PLHLAAK+GH +VEFL+
Sbjct: 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 6/42 (14%)
Query: 67 ILDLCPSLL-FQANA-----KGDSPLHLAAKKGHTAIVEFLI 102
LD +LL FQA+ +G+ PLHLAAK+GH +VEFL+
Sbjct: 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 6/41 (14%)
Query: 68 LDLCPSLL-FQANA-----KGDSPLHLAAKKGHTAIVEFLI 102
LD +LL FQA+ +G+ PLHLAAK+GH +VEFL+
Sbjct: 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 6/42 (14%)
Query: 67 ILDLCPSLL-FQANA-----KGDSPLHLAAKKGHTAIVEFLI 102
LD +LL FQA+ +G+ PLHLAAK+GH +VEFL+
Sbjct: 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 123
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
++ ++TPLH A V +V++L++ V ++ ++ L+ A + G E+ +L+
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLK 112
Query: 187 NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADP 228
+ A + Q TPLHEA RV+V +L+ ADP
Sbjct: 113 HGACVNAMDLW------QFTPLHEAASKNRVEVCSLLLSHGADP 150
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 254 VAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSET 313
V EILQ+ +++ + E NTPL+ AV +++AK LI+ + N S++
Sbjct: 21 VKEILQDTT-----YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ-NSISDS 74
Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPD 343
P A A G +I+A +L+ H PD
Sbjct: 75 PYLYAGAQGRTEILAYMLK------HATPD 98
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 38/211 (18%)
Query: 158 SYSANRNSETLLYMAVAN---GSAEIVAEILQNCPQSAARQML---EKTNE--EQNTPLH 209
+Y+ +T L AV N G + +LQ S + L + T+E + ++ LH
Sbjct: 36 AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALH 95
Query: 210 EAVRLRRVDVVKILIK--ADPHVP-----YSANRNS-----ETPLYMAVANGSAEIVAEI 257
A+ R + VK+L++ AD H+ + ++ + E PL +A ++V +
Sbjct: 96 IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155
Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRL--RSVDVAKILIEA-----------DPHVP 304
L+N + A+ LE T+ NT LH V + S + + ++I P V
Sbjct: 156 LENPHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 212
Query: 305 YS--ANRNSETPLYMAAANGSVKIVAKILQK 333
+N TPL +AA G ++I ILQ+
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 30/157 (19%)
Query: 130 EQNTPLHEAVRLRSVDVVKILIK--ADPHVSYSA---NRNSETLLY-------MAVANGS 177
+ ++ LH A+ RS+ VK+L++ AD H+ ++ T Y +A
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 178 AEIVAEILQNCPQSAARQMLEKTNEEQNTPLH------------EAVRLRRVD-VVKILI 224
++V +L+N Q A+ LE T+ NT LH A+ + D ++++
Sbjct: 149 WDVVTYLLENPHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205
Query: 225 KADPHVPYS--ANRNSETPLYMAVANGSAEIVAEILQ 259
+ P V +N TPL +A G EI ILQ
Sbjct: 206 RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 30 TDVMKNTVLHVNIMRSHLTLQXXXXXXXXXXXXFVEQILDLCPSLLFQ--ANAKGDSPLH 87
TD + NTVLH +M + + + ++ LCP++ + +N +G +PL
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDG-LLQMGARLCPTVQLEEISNHQGLTPLK 226
Query: 88 LAAKKGHTAIVEFLI 102
LAAK+G I ++
Sbjct: 227 LAAKEGKIEIFRHIL 241
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 16/126 (12%)
Query: 231 PYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSV 290
+ A+ + + Y A+A+ + +V +L A + +LE NE PLH+A L
Sbjct: 24 TFKADVHGHSASYYAIADNNVRLVCTLLN---AGALKNLLE--NE---FPLHQAATLEDT 75
Query: 291 DVAKILIEA---DPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDG-KT 346
+ KIL+ + D N T LY A +G+ + V ++K G G KT
Sbjct: 76 KIVKILLFSGLDDSQFDDKGN----TALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKT 131
Query: 347 ALHAAV 352
+ + AV
Sbjct: 132 SFYHAV 137
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Query: 130 EQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCP 189
E PLH+A L +VKIL+ + S ++ T LY AV +G+ + V ++
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDK-GNTALYYAVDSGNXQTVKLFVK--- 116
Query: 190 QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADP 228
++ KT + T + AV L V +V + P
Sbjct: 117 KNWRLXFYGKTGWK--TSFYHAVXLNDVSIVSYFLSEIP 153
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 270 LEKTNEEQNTPLHEAVRLRSVDVAKILI--EADPHVPYSANRNSETPLYMAAANGSVKIV 327
+ +T E PLH A +++ + L+ AD + P +++ TPL A G V V
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP---DKHHITPLLSAVYEGHVSCV 89
Query: 328 AKILQKCPSPAHEGPDGKTALHA 350
+L K +GPDG TA A
Sbjct: 90 KLLLSKGADKTVKGPDGLTAFEA 112
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 19/137 (13%)
Query: 162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
NR +T L + + GS I E+L+ Q A+ + + + +P+H+A R +D +K
Sbjct: 33 NRFGKTALQVMMF-GSTAIALELLK---QGASPNVQDTSG---TSPVHDAARTGFLDTLK 85
Query: 222 ILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT 279
+L++ AD +VP + P+++AV G +V+ + AA L + + T
Sbjct: 86 VLVEHGADVNVP---DGTGALPIHLAVQEGHTAVVSFL-------AAESDLHRRDARGLT 135
Query: 280 PLHEAVRLRSVDVAKIL 296
PL A++ + D+ IL
Sbjct: 136 PLELALQRGAQDLVDIL 152
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
+ G P+HLA ++GHTA+V FL AA L + TPL A
Sbjct: 98 DGTGALPIHLAVQEGHTAVVSFL-----------------AAESDLHRRDARGLTPLELA 140
Query: 139 VRLRSVDVVKIL 150
++ + D+V IL
Sbjct: 141 LQRGAQDLVDIL 152
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 231 PYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSV 290
P + NR +T L + + GS I E+L+ A ++ T+ +P+H+A R +
Sbjct: 29 PDALNRFGKTALQVMMF-GSTAIALELLKQ----GASPNVQDTS--GTSPVHDAARTGFL 81
Query: 291 DVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVA 328
D K+L+E AD +VP + P+++A G +V+
Sbjct: 82 DTLKVLVEHGADVNVP---DGTGALPIHLAVQEGHTAVVS 118
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 19/137 (13%)
Query: 162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
NR +T L + + GS I E+L+ Q A+ + + + +P+H+A R +D +K
Sbjct: 39 NRFGKTALQVMMF-GSTAIALELLK---QGASPNVQDTSG---TSPVHDAARTGFLDTLK 91
Query: 222 ILIK--ADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNT 279
+L++ AD +VP + P+++AV G +V+ + AA L + + T
Sbjct: 92 VLVEHGADVNVP---DGTGALPIHLAVQEGHTAVVSFL-------AAESDLHRRDARGLT 141
Query: 280 PLHEAVRLRSVDVAKIL 296
PL A++ + D+ IL
Sbjct: 142 PLELALQRGAQDLVDIL 158
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 17/72 (23%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEA 138
+ G P+HLA ++GHTA+V FL AA L + TPL A
Sbjct: 104 DGTGALPIHLAVQEGHTAVVSFL-----------------AAESDLHRRDARGLTPLELA 146
Query: 139 VRLRSVDVVKIL 150
++ + D+V IL
Sbjct: 147 LQRGAQDLVDIL 158
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Query: 231 PYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSV 290
P + NR +T L + + GS I E+L+ A ++ T+ +P+H+A R +
Sbjct: 35 PDALNRFGKTALQVMMF-GSTAIALELLKQ----GASPNVQDTS--GTSPVHDAARTGFL 87
Query: 291 DVAKILIE--ADPHVPYSANRNSETPLYMAAANGSVKIVA 328
D K+L+E AD +VP + P+++A G +V+
Sbjct: 88 DTLKVLVEHGADVNVP---DGTGALPIHLAVQEGHTAVVS 124
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 1 MDRKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXX 60
+D L+EAA +G++ RE + + D +T L+ H +
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI----------- 121
Query: 61 XXFVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPI 110
VE + L Q N GD+ LH AA KG+ IV+ L+ R +
Sbjct: 122 ---VEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 19/82 (23%)
Query: 72 PSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQ 131
PSL N +G + LH A GHT IV+FL+ F GV A + +
Sbjct: 63 PSL---PNDEGITALHNAVCAGHTEIVKFLVQF----------GVNVNA------ADSDG 103
Query: 132 NTPLHEAVRLRSVDVVKILIKA 153
TPLH A +V V K L+++
Sbjct: 104 WTPLHCAASCNNVQVCKFLVES 125
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 218 DVVKILIKA--DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNE 275
D+V+ +I DP +P N T L+ AV G EIV ++Q A +
Sbjct: 51 DLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNVNA------ADS 101
Query: 276 EQNTPLHEAVRLRSVDVAKILIEA 299
+ TPLH A +V V K L+E+
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVES 125
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 19/82 (23%)
Query: 72 PSLLFQANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQ 131
PSL N +G + LH A GHT IV+FL+ F GV A + +
Sbjct: 63 PSL---PNDEGITALHNAVCAGHTEIVKFLVQF----------GVNVNA------ADSDG 103
Query: 132 NTPLHEAVRLRSVDVVKILIKA 153
TPLH A +V V K L+++
Sbjct: 104 WTPLHCAASCNNVQVCKFLVES 125
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 218 DVVKILIKA--DPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNE 275
D+V+ +I DP +P N T L+ AV G EIV ++Q A +
Sbjct: 51 DLVQRIIYEVDDPSLP---NDEGITALHNAVCAGHTEIVKFLVQFGVNVNA------ADS 101
Query: 276 EQNTPLHEAVRLRSVDVAKILIEA 299
+ TPLH A +V V K L+E+
Sbjct: 102 DGWTPLHCAASCNNVQVCKFLVES 125
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ V + ++N TPL++AA NG +++V +L+ +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 341 GPDGKTALHAAVYTYPTDILE 361
GKTA ++ D+ E
Sbjct: 87 DKFGKTAFDISIDNGNEDLAE 107
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + ++N TPL++A NG E+V +L+ + A+
Sbjct: 28 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 268 QMLEKT 273
KT
Sbjct: 87 DKFGKT 92
Score = 33.1 bits (74), Expect = 0.37, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 155 PHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRL 214
P S+ + + LL A A G + V ++ N AA+ ++ +TPLH A R
Sbjct: 15 PRGSHMGSDLGKKLLEAARA-GQDDEVRILMANGADVAAK------DKNGSTPLHLAARN 67
Query: 215 RRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
++VVK+L++A V + ++ +T +++ NG+ E +AEILQ
Sbjct: 68 GHLEVVKLLLEAGADVX-AQDKFGKTAFDISIDNGN-EDLAEILQ 110
Score = 33.1 bits (74), Expect = 0.43, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 8/77 (10%)
Query: 110 IDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLL 169
I + G + AA+ ++ +TPLH A R ++VVK+L++A V + ++ +T
Sbjct: 42 ILMANGADVAAK------DKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAF 94
Query: 170 YMAVANGSAEIVAEILQ 186
+++ NG+ E +AEILQ
Sbjct: 95 DISIDNGN-EDLAEILQ 110
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLI 102
+ G +PLHLAA+ GH +V+ L+
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLL 77
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 10/105 (9%)
Query: 230 VPYSANRNSE--TPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRL 287
VP ++ S+ L A G + V ++ N + AA+ ++ +TPLH A R
Sbjct: 14 VPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK------DKNGSTPLHLAARN 67
Query: 288 RSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQ 332
++V K+L+EA V + ++ +T ++ NG+ + +A+ILQ
Sbjct: 68 GHLEVVKLLLEAGADVX-AQDKFGKTAFDISIDNGN-EDLAEILQ 110
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 38/211 (18%)
Query: 158 SYSANRNSETLLYMAVAN---GSAEIVAEILQNCPQSAARQML---EKTNE--EQNTPLH 209
+Y+ +T L AV N G + +LQ S + L + T+E + ++ LH
Sbjct: 49 AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALH 108
Query: 210 EAVRLRRVDVVKILIK--ADPHVP-----YSANRNS-----ETPLYMAVANGSAEIVAEI 257
A+ R + VK+L++ AD H+ + ++ + E PL +A ++V +
Sbjct: 109 IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 168
Query: 258 LQNCPESAARQMLEKTNEEQNTPLHEAVRL--RSVDVAKILIEA-----------DPHVP 304
L+N + A+ LE T+ NT LH V + S + + ++I P V
Sbjct: 169 LENPHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 225
Query: 305 YS--ANRNSETPLYMAAANGSVKIVAKILQK 333
+N TPL +AA G ++I ILQ+
Sbjct: 226 LEEISNHQGLTPLKLAAKEGKIEIFRHILQR 256
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 30/155 (19%)
Query: 132 NTPLHEAVRLRSVDVVKILIK--ADPHVSYSA---NRNSETLLY-------MAVANGSAE 179
++ LH A+ RS+ VK+L++ AD H+ ++ T Y +A +
Sbjct: 104 HSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 163
Query: 180 IVAEILQNCPQSAARQMLEKTNEEQNTPLH------------EAVRLRRVD-VVKILIKA 226
+V +L+N Q A+ LE T+ NT LH A+ + D ++++ +
Sbjct: 164 VVTYLLENPHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL 220
Query: 227 DPHVPYS--ANRNSETPLYMAVANGSAEIVAEILQ 259
P V +N TPL +A G EI ILQ
Sbjct: 221 CPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 255
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 30 TDVMKNTVLHVNIMRSHLTLQXXXXXXXXXXXXFVEQILDLCPSLLFQ--ANAKGDSPLH 87
TD + NTVLH +M + + + ++ LCP++ + +N +G +PL
Sbjct: 181 TDSLGNTVLHALVMIADNSPENSALVIHMYDG-LLQMGARLCPTVQLEEISNHQGLTPLK 239
Query: 88 LAAKKGHTAIVEFLI 102
LAAK+G I ++
Sbjct: 240 LAAKEGKIEIFRHIL 254
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 81 KGDSPLHLAAKKGHTAIVEFLI 102
+G+ PLHLAAK+GH +VEFL+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLV 123
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 85/278 (30%)
Query: 130 EQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCP 189
E N L +AV+ VD+V+ L++ +V++ T
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWT---------------------- 41
Query: 190 QSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK--ADPHVPYSANRNSETPLYMAVA 247
PLH AV++ R D+V++L++ ADP + +N TP +A
Sbjct: 42 -----------------PLHNAVQMSREDIVELLLRHGADPVLR---KKNGATPFLLAAI 81
Query: 248 NGSAEIVAEILQNCPE------------------------------SAARQMLEKTNEEQ 277
GS +++ L + A + KT E+Q
Sbjct: 82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141
Query: 278 N-------TPLHEAVRLRSVDVAKILIE---ADPHVPYSANRNSETPLYMAAANGSVKIV 327
T L +A V+V KIL++ AD + + RN+ +++ + V+ +
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201
Query: 328 AKILQKCPSPAH-EGPDGKTALHAAVYTYPTDILERVL 364
+L + + G GKT L AV +++R+L
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 239
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 111/284 (39%), Gaps = 30/284 (10%)
Query: 100 FLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIK--ADPHV 157
LI + +DL + + + E TPLH AV++ D+V++L++ ADP +
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 158 SYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRV 217
+N T +A GS +++ L + + + T EA +V
Sbjct: 68 R---KKNGATPFLLAAIAGSVKLLKLFLSKGAD------VNECDFYGFTAFMEAAVYGKV 118
Query: 218 DVVKILIKADPHVPYSAN---------RNSETPLYMAVANGSAEIVAEILQNCPESAARQ 268
+K L K +V + T L A G E++ +L +
Sbjct: 119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL----DEMGAD 174
Query: 269 MLEKTNEEQNTPLHEAVRLRSVDVAKI---LIEADPHVPYSANRNSETPLYMAAANGSVK 325
+ N +N +H + DV I L++ V R +TPL +A +
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-GKTPLILAVEKKHLG 233
Query: 326 IVAKILQKCPSPAHE-GPDGKTALHAAVYTYPTDILERVLIVRG 368
+V ++L++ ++ DGKTAL AV I E +L RG
Sbjct: 234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE-LLCKRG 276
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ V + ++N TPL++AA NG +++V +L+ +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 341 GPDGKTALHAAVYTYPTDILE 361
GKTA ++ D+ E
Sbjct: 69 DKFGKTAFDISIDNGNEDLAE 89
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + ++N TPL++A NG E+V +L+ + A+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 268 QMLEKT 273
KT
Sbjct: 69 DKFGKT 74
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 110 IDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLL 169
I + G + AA+ ++ +TPLH A R ++VVK+L++A V+ + ++ +T
Sbjct: 24 ILMANGADVAAK------DKNGSTPLHLAARNGHLEVVKLLLEAGADVN-AQDKFGKTAF 76
Query: 170 YMAVANGSAEIVAEILQ 186
+++ NG+ E +AEILQ
Sbjct: 77 DISIDNGN-EDLAEILQ 92
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 205 NTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
+TPLH A R ++VVK+L++A V + ++ +T +++ NG+ E +AEILQ
Sbjct: 40 STPLHLAARNGHLEVVKLLLEAGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 92
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFLI 102
+ G +PLHLAA+ GH +V+ L+
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLL 59
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 135 LHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAAR 194
L EA R D V+IL+ V+ + ++N T L++A NG E+V +L+ A+
Sbjct: 10 LLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 195 QMLEKT 200
KT
Sbjct: 69 DKFGKT 74
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 115/294 (39%), Gaps = 33/294 (11%)
Query: 93 GHTAIVE---FLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKI 149
G A VE LI + +DL + + + E TPLH AV++ D+V++
Sbjct: 18 GRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL 77
Query: 150 LIK--ADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTP 207
L++ ADP + +N T +A GS +++ L + + + T
Sbjct: 78 LLRHGADPVLR---KKNGATPFILAAIAGSVKLLKLFLSKGAD------VNECDFYGFTA 128
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSAN---------RNSETPLYMAVANGSAEIVAEIL 258
EA +V +K L K +V + T L A G E++ +L
Sbjct: 129 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 188
Query: 259 QNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI---LIEADPHVPYSANRNSETPL 315
+ + N +N +H + DV I L++ V R +TPL
Sbjct: 189 ----DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER-GKTPL 243
Query: 316 YMAAANGSVKIVAKILQKCPSPAHE-GPDGKTALHAAVYTYPTDILERVLIVRG 368
+A + +V ++L++ ++ DGKTAL AV I E +L RG
Sbjct: 244 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE-LLCKRG 296
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 163 RNSETLLYMAVANGSAEIVAEILQNCPQS--AARQMLEKTNEEQNTPLHEAVRLRRVDVV 220
R++ T+L+ +N SAE +++ + + AA + + ++NTPL AV RR +V
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLV 182
Query: 221 KILIKA--DPHVPYSANRNSETPLYMAVAN------------------------------ 248
L KA DP + N++ + L+ A AN
Sbjct: 183 AYLXKAGADPTI---YNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTAL 239
Query: 249 ------------GSAEIVAEILQNCP-ESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKI 295
SA+++ E + AAR+ EK + T LH A ++ + + K
Sbjct: 240 XIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKY--KGRTALHYAAQVSNXPIVKY 297
Query: 296 LIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPS 336
L+ + + +TP+ +AA G +++V ++Q+ S
Sbjct: 298 LVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 192 AARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSA 251
AAR+ EK + T LH A ++ +VK L+ + + +TP+ +A G
Sbjct: 269 AARKDSEKY--KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRI 326
Query: 252 EIVAEILQ--------NCPESAARQMLEKTN 274
E+V ++Q + + ARQ+ + N
Sbjct: 327 EVVXYLIQQGASVEAVDATDHTARQLAQANN 357
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 28/222 (12%)
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
+PL A + V + L+K + + ET L++A + E +++ P+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 193 ARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHV------------PYSANRNSET 240
M + E Q T LH AV + V++V+ L+ V P++ E
Sbjct: 65 FEPMTSELYEGQ-TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 241 PLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAV----RLRSVDVAKIL 296
PL A GS EIV ++++ + A+ L NT LH + + + + +L
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSL------GNTVLHILILQPNKTFACQMYNLL 177
Query: 297 IEAD-----PHVPYSANRNSETPLYMAAANGSVKIVAKILQK 333
+ D + N TP +A G++ + ++QK
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
+PL A + V + L+K + + ET L++A + E +++ PE
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHV------------PYSANRNSET 313
M + E Q T LH AV ++V++ + L+ V P++ E
Sbjct: 65 FEPMTSELYEGQ-TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 314 PLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALH 349
PL AA GS +IV +++ + G T LH
Sbjct: 124 PLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH 159
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 6/57 (10%)
Query: 312 ETPLYMAAANGSVKIVAKILQKCPSPAHE-GPDGKTALH-AAVYTYPTDILERVLIV 366
E+PL +AA V+ ++K+L+ H+ G G+TALH AA+Y D LE +++
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY----DNLEAAMVL 56
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 12/60 (20%)
Query: 356 PTDILERVLIVRGT-FKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQSLHT 414
P D+L+RV+I+R + PQE++++ K +R QTE + EEAL + + T
Sbjct: 351 PLDLLDRVMIIRTMLYTPQEMKQIIK-----------IRAQTEGINISEEALNHLGEIGT 399
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
TPLH A R +++V++L+KA V+ + ++ +T +++ NG+ E +AEILQ
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 88
Score = 32.3 bits (72), Expect = 0.71, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQ 259
TPLH A R +++V++L+KA V + ++ +T +++ NG+ E +AEILQ
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGN-EDLAEILQ 88
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 3/27 (11%)
Query: 79 NAK---GDSPLHLAAKKGHTAIVEFLI 102
NAK G +PLHLAA++GH IVE L+
Sbjct: 29 NAKDKDGYTPLHLAAREGHLEIVEVLL 55
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 281 LHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHE 340
L EA R D +IL+ V + +++ TPL++AA G ++IV +L+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 341 GPDGKTALHAAVYTYPTDILE 361
GKTA ++ D+ E
Sbjct: 65 DKFGKTAFDISIDNGNEDLAE 85
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
L EA R + D V+IL+ V + +++ TPL++A G EIV +L+ + A+
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 268 QMLEKT 273
KT
Sbjct: 65 DKFGKT 70
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESA 265
TPLH A +++V++L+K V + + ETPL++ G EIV +L++ +
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 266 ARQMLEKT 273
A+ KT
Sbjct: 108 AQDKFGKT 115
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 3 RKLYEAAAKGDIEPFREIARDELESIVTDVMKNTVLHVNIMRSHLTLQXXXXXXXXXXXX 62
+KL EAA G + R + + + D + T LH+ M HL +
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEI------------- 62
Query: 63 FVEQILDLCPSLLFQANAKGDSPLHLAAKKGHTAIVEFLI 102
VE +L + +A G++PLHL A GH IVE L+
Sbjct: 63 -VEVLLKNGADV-NAIDAIGETPLHLVAMYGHLEIVEVLL 100
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 279 TPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPA 338
TPLH A +++ ++L++ V + + ETPL++ A G ++IV +L+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 339 HEGPDGKTALHAAVYTYPTDILE 361
+ GKTA ++ D+ E
Sbjct: 108 AQDKFGKTAFDISIDNGNEDLAE 130
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 37/143 (25%)
Query: 133 TPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSA 192
TPLH AV ++ V +IL+ RN T L + +G+ ++ + A
Sbjct: 86 TPLHAAVAADAMGVFQILL-----------RNRATNLNARMHDGTTPLIL-----AARLA 129
Query: 193 ARQMLEK----------TNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNS---- 238
M+E + T LH A + + V IL+ + ANR++
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM------HHANRDAQDDK 183
Query: 239 -ETPLYMAVANGSAEIVAEILQN 260
ETPL++A GS E +L N
Sbjct: 184 DETPLFLAAREGSYEASKALLDN 206
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 149 ILIKA-DPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKT--NEEQN 205
+L KA P + A N LL A G E+V Q A ++M + + NEE
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVV--------QQAVKEMNDPSQPNEEGI 55
Query: 206 TPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQN 260
T LH A+ +V LI A +V S + + TPL+ A + I ++Q+
Sbjct: 56 TALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAASCNDTVICMALVQH 109
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 231 PYSANRNSETPLYM---AVANGSAEIVAEILQNCPESAARQMLEKT--NEEQNTPLHEAV 285
P A R PL + A G E+V + A ++M + + NEE T LH A+
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVV--------QQAVKEMNDPSQPNEEGITALHNAI 62
Query: 286 RLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIVAKILQ 332
+ + LI A +V S + + TPL+ AA+ I ++Q
Sbjct: 63 CGANYSIVDFLITAGANVN-SPDSHGWTPLHCAASCNDTVICMALVQ 108
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 353 YTYPTDILERVLIVRGT-FKPQEIQELSKNVGRGQYPNGILRVQTEKEPVDEEALKEMQS 411
+ P D+L+RV I+R + PQE +++ K +R QTE + EEAL +
Sbjct: 259 HGIPLDLLDRVXIIRTXLYTPQEXKQIIK-----------IRAQTEGINISEEALNHLGE 307
Query: 412 LHT 414
+ T
Sbjct: 308 IGT 310
>pdb|3H38|A Chain A, The Structure Of Cca-Adding Enzyme Apo Form Ii
pdb|3H39|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Atp
pdb|3H39|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Atp
pdb|3H3A|A Chain A, The Complex Structure Of Cca-Adding Enzyme With Ctp
pdb|3H3A|B Chain B, The Complex Structure Of Cca-Adding Enzyme With Ctp
Length = 441
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 151 IKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHE 210
I+ + + +E LL AV G L+ RQ LEK EE+N PL
Sbjct: 182 IRFEQRFDFRIEETTERLLKQAVEEGY-------LERTTGPRLRQELEKILEEKN-PLKS 233
Query: 211 AVRLRRVDVVKILIKADPHVP 231
R+ + DV+K L + P
Sbjct: 234 IRRMAQFDVIKHLFPKTYYTP 254
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 82 GDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLHEAVRL 141
G + LH+AA KG+T +++ LI AR + + + + TPLH A
Sbjct: 199 GGTALHVAAAKGYTEVLKLLI----------------QARYDVNIKDYDGWTPLHAAAHW 242
Query: 142 RSVDVVKILIK 152
+ +IL++
Sbjct: 243 GKEEACRILVE 253
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 27/207 (13%)
Query: 150 LIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLH 209
L++ ++Y AN + T L+ A + + ++V +++N + + + E PLH
Sbjct: 59 LLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENGAN------INQPDNEGWIPLH 111
Query: 210 EAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEIL--QNCPESAAR 267
A +D+ + LI HV + N +TPL +A E++ + Q AAR
Sbjct: 112 AAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170
Query: 268 QMLEKTNEEQNTPLHEAVR-LRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKI 326
+ EE+ L +A + L S + + H ++ T L++AAA G ++
Sbjct: 171 K------EEERIMLRDARQWLNSGHINDV-----RHA-----KSGGTALHVAAAKGYTEV 214
Query: 327 VAKILQKCPSPAHEGPDGKTALHAAVY 353
+ ++Q + DG T LHAA +
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAH 241
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 45/213 (21%)
Query: 112 LERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYM 171
LERG + + N + T LH+A +VD+VK L++ +++ N L+
Sbjct: 60 LERGAD------INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHA 112
Query: 172 AVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPL------------HEAVRLRRVDV 219
A + G +I ++ A N E +TPL V + VD+
Sbjct: 113 AASCGYLDIAEYLISQGAHVGA------VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166
Query: 220 V-------KILIKADPHVPYSAN-------RNSETPLYMAVANGSAEIVAEILQNCPESA 265
+I+++ S + ++ T L++A A G E++ ++Q
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ------ 220
Query: 266 ARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
AR + + + TPLH A + +IL+E
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 56/179 (31%)
Query: 77 QANAKGDSPLHLAAKKGHTAIVEFLIVFA------------------------------N 106
Q + +G PLH AA G+ I E+LI N
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 107 RQPIDLERGVESAARQILKMTNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSE 166
RQ +D+E AAR+ EE+ L +A + + + + A ++
Sbjct: 161 RQGVDIE-----AARK------EEERIMLRDARQWLNSGHINDVRHA---------KSGG 200
Query: 167 TLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIK 225
T L++A A G E++ ++Q AR + + + TPLH A + + +IL++
Sbjct: 201 TALHVAAAKGYTEVLKLLIQ------ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
+H+ +D +K ++ ++ + TPL A A G E V +L+ A
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---WGADP 62
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+L K E+ + L A D+ +L+E D + + N TPL A VK V
Sbjct: 63 HILAK---ERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVRGNHVKCV 118
Query: 328 AKILQKCPSPAHEGPDGKTALHAAV 352
+L + E G T + AV
Sbjct: 119 EALLARGADLTTEADSGYTPMDLAV 143
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 208 LHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPESAAR 267
+H+ +D +K ++ ++ + TPL A A G E V +L+ A
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLE---WGADP 62
Query: 268 QMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPYSANRNSETPLYMAAANGSVKIV 327
+L K E+ + L A D+ +L+E D + + N TPL A VK V
Sbjct: 63 HILAK---ERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPLLYAVHGNHVKCV 118
Query: 328 AKILQKCPSPAHEGPDGKTALHAAV 352
+L + E G T + AV
Sbjct: 119 EALLARGADLTTEADSGYTPMDLAV 143
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
QA++ G PLH A GHT + L+RG + AR + E PL
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLF----------LKRGADLGAR------DSEGRDPLT 306
Query: 137 EAVRLRSVDVVKIL 150
A+ + D+V +L
Sbjct: 307 IAMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
QA++ G PLH A GHT + L+RG + AR + E PL
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLF----------LKRGADLGAR------DSEGRDPLT 306
Query: 137 EAVRLRSVDVVKIL 150
A+ + D+V +L
Sbjct: 307 IAMETANADIVTLL 320
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 16/74 (21%)
Query: 77 QANAKGDSPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVESAARQILKMTNEEQNTPLH 136
QA++ G PLH A GHT + L+RG + AR + E PL
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLF----------LKRGADLGAR------DSEGRDPLT 306
Query: 137 EAVRLRSVDVVKIL 150
A+ + D+V +L
Sbjct: 307 IAMETANADIVTLL 320
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 13/172 (7%)
Query: 127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
T+ T LH A R D K L++A N T L+ AV+ + + +L+
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNM-GRTPLHAAVSADAQGVFQILLR 76
Query: 187 NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAV 246
N +M + T TPL A RL +++ LI + V + + ++ L+ A
Sbjct: 77 NRATDLDARMHDGT-----TPLILAARLALEGMLEDLINSHADVN-AVDDLGKSALHWAA 130
Query: 247 ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
A + + +L+N A + M N ++ TPL A R S + AK+L++
Sbjct: 131 AVNNVDAAVVLLKN---GANKDM---QNNKEETPLFLAAREGSYETAKVLLD 176
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 69 DLCPSLLFQANAKGD--------SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVES-- 118
D C LL +A A D + LH+AA +VE L+ ++ ERG+ +
Sbjct: 89 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 148
Query: 119 AARQILKMTNEEQNTPLHEAVRLRSVDVVKIL 150
AR+ILK T + P+ R+ V+ +L
Sbjct: 149 LAREILKTT--PKGNPMQFGRRIGLEKVINVL 178
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 69 DLCPSLLFQANAKGD--------SPLHLAAKKGHTAIVEFLIVFANRQPIDLERGVES-- 118
D C LL +A A D + LH+AA +VE L+ ++ ERG+ +
Sbjct: 90 DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALE 149
Query: 119 AARQILKMTNEEQNTPLHEAVRLRSVDVVKIL 150
AR+ILK T + P+ R+ V+ +L
Sbjct: 150 LAREILKTTP--KGNPMQFGRRIGLEKVINVL 179
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 70/162 (43%), Gaps = 21/162 (12%)
Query: 239 ETPLYMAVANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
ETP + A + ++++L++ + ++ +E T L L S ++L E
Sbjct: 46 ETPWWTAARKADEQALSQLLED-------RDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98
Query: 299 ADPHVPYSANRNSETPLYMAAANGSVKIVAKILQKCPSPAHEGPDGKTALHAA---VYTY 355
A + + R T L+MAA ++V +++ E G TAL A + T
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158
Query: 356 PTD---------ILERVL-IVRG-TFKPQEIQELSKNVGRGQ 386
P LE+V+ ++ G F+ E+ E+ + G+G+
Sbjct: 159 PKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
T+ T LH A R D K L++A + N T L+ AV+ + + +++
Sbjct: 54 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIR 112
Query: 187 NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAV 246
N +M + T TPL A RL +++ LI + V + + ++ L+ A
Sbjct: 113 NRATDLDARMHDGT-----TPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAA 166
Query: 247 ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
A + + +L+N A + ++ EE TPL A R S + AK+L++
Sbjct: 167 AVNNVDAAVVLLKN----GANKDMQNNREE--TPLFLAAREGSYETAKVLLD 212
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFL 101
++ G P+HLA ++GH+++V FL
Sbjct: 104 DSTGSLPIHLAIREGHSSVVSFL 126
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
NR +T L + + GS + E+L+ Q A+ + + + +P+H+A R +D +K
Sbjct: 39 NRFGKTALQVMMF-GSPAVALELLK---QGASPNVQDASG---TSPVHDAARTGFLDTLK 91
Query: 222 ILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES 264
+L++ V + + P+++A+ G + +V+ + PES
Sbjct: 92 VLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL---APES 130
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 79 NAKGDSPLHLAAKKGHTAIVEFL 101
++ G P+HLA ++GH+++V FL
Sbjct: 106 DSTGSLPIHLAIREGHSSVVSFL 128
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 162 NRNSETLLYMAVANGSAEIVAEILQNCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVK 221
NR +T L + + GS + E+L+ Q A+ + + + +P+H+A R +D +K
Sbjct: 41 NRFGKTALQVMMF-GSPAVALELLK---QGASPNVQDASG---TSPVHDAARTGFLDTLK 93
Query: 222 ILIKADPHVPYSANRNSETPLYMAVANGSAEIVAEILQNCPES 264
+L++ V + + P+++A+ G + +V+ + PES
Sbjct: 94 VLVEHGADV-NALDSTGSLPIHLAIREGHSSVVSFL---APES 132
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 83/185 (44%), Gaps = 21/185 (11%)
Query: 127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
T+ T LH A R D K L++A + N T L+ AV+ + + +++
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIR 111
Query: 187 NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRN-SETPLYMA 245
N +M + T TPL A RL +++ LI + H +A + ++ L+ A
Sbjct: 112 NRATDLDARMHDGT-----TPLILAARLAVEGMLEDLINS--HADVNAVDDLGKSALHWA 164
Query: 246 VANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIEADPHVPY 305
A + + +L+N A + ++ EE TPL A R S + AK+L++ +
Sbjct: 165 AAVNNVDAAVVLLKN----GANKDMQNNREE--TPLFLAAREGSYETAKVLLD------H 212
Query: 306 SANRN 310
ANR+
Sbjct: 213 FANRD 217
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 127 TNEEQNTPLHEAVRLRSVDVVKILIKADPHVSYSANRNSETLLYMAVANGSAEIVAEILQ 186
T+ T LH A R D K L++A + N T L+ AV+ + + +++
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM-GRTPLHAAVSADAQGVFQILIR 79
Query: 187 NCPQSAARQMLEKTNEEQNTPLHEAVRLRRVDVVKILIKADPHVPYSANRNSETPLYMAV 246
N +M + T TPL A RL +++ LI + V + + ++ L+ A
Sbjct: 80 NRATDLDARMHDGT-----TPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAA 133
Query: 247 ANGSAEIVAEILQNCPESAARQMLEKTNEEQNTPLHEAVRLRSVDVAKILIE 298
A + + +L+N A + ++ EE TPL A R S + AK+L++
Sbjct: 134 AVNNVDAAVVLLKN----GANKDMQNNREE--TPLFLAAREGSYETAKVLLD 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,244,441
Number of Sequences: 62578
Number of extensions: 538674
Number of successful extensions: 2492
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1493
Number of HSP's gapped (non-prelim): 498
length of query: 556
length of database: 14,973,337
effective HSP length: 104
effective length of query: 452
effective length of database: 8,465,225
effective search space: 3826281700
effective search space used: 3826281700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)