Query 045086
Match_columns 522
No_of_seqs 119 out of 174
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 09:43:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2734 Uncharacterized conser 100.0 4E-141 8E-146 1096.3 41.7 509 3-521 13-536 (536)
2 PF08216 CTNNBL: Catenin-beta- 100.0 3.7E-42 8E-47 302.3 7.3 105 20-124 3-108 (108)
3 PLN03200 cellulose synthase-in 97.8 0.0019 4.2E-08 80.6 22.7 251 82-350 119-457 (2102)
4 PLN03200 cellulose synthase-in 97.7 0.0077 1.7E-07 75.5 26.2 245 79-351 380-663 (2102)
5 PF05804 KAP: Kinesin-associat 97.7 0.13 2.8E-06 59.3 32.8 264 80-394 267-531 (708)
6 PF05804 KAP: Kinesin-associat 97.6 0.013 2.8E-07 67.2 23.1 301 44-392 306-616 (708)
7 PF10508 Proteasom_PSMB: Prote 97.4 0.026 5.6E-07 62.2 21.8 175 83-279 98-278 (503)
8 KOG2160 Armadillo/beta-catenin 97.3 0.043 9.4E-07 58.0 20.7 210 175-408 96-309 (342)
9 cd00020 ARM Armadillo/beta-cat 96.7 0.02 4.4E-07 48.2 10.3 117 98-233 2-118 (120)
10 PF03224 V-ATPase_H_N: V-ATPas 96.0 0.51 1.1E-05 48.6 18.2 226 105-349 57-293 (312)
11 cd00020 ARM Armadillo/beta-cat 96.0 0.13 2.7E-06 43.3 11.6 115 244-379 3-119 (120)
12 PF03224 V-ATPase_H_N: V-ATPas 95.9 0.48 1E-05 48.8 17.0 201 156-384 57-269 (312)
13 PF08045 CDC14: Cell division 95.3 0.32 7E-06 49.8 13.3 78 274-351 108-188 (257)
14 PF08045 CDC14: Cell division 95.0 0.22 4.8E-06 51.0 11.0 112 207-326 87-204 (257)
15 KOG4199 Uncharacterized conser 94.8 4.3 9.3E-05 43.7 19.8 241 80-338 165-415 (461)
16 KOG0166 Karyopherin (importin) 94.5 1.4 3.1E-05 49.2 16.3 241 61-327 200-487 (514)
17 cd00256 VATPase_H VATPase_H, r 93.5 12 0.00026 41.2 21.0 284 103-411 53-363 (429)
18 KOG1048 Neural adherens juncti 93.0 1.8 3.9E-05 50.0 14.2 290 68-396 226-607 (717)
19 PF00514 Arm: Armadillo/beta-c 92.6 0.083 1.8E-06 38.4 2.0 40 93-132 2-41 (41)
20 KOG2160 Armadillo/beta-catenin 91.5 1.8 3.8E-05 46.2 11.0 108 270-388 96-204 (342)
21 PF06371 Drf_GBD: Diaphanous G 91.3 1.5 3.1E-05 41.1 9.3 116 204-324 65-185 (187)
22 PF10508 Proteasom_PSMB: Prote 89.9 36 0.00079 37.8 23.0 188 95-311 69-256 (503)
23 TIGR03060 PS_II_psb29 photosys 89.6 2.2 4.8E-05 42.8 9.3 136 336-500 51-195 (214)
24 PF13764 E3_UbLigase_R4: E3 ub 89.5 10 0.00022 44.8 16.0 217 244-509 113-346 (802)
25 KOG0166 Karyopherin (importin) 89.1 25 0.00053 39.7 17.8 259 57-350 68-332 (514)
26 smart00185 ARM Armadillo/beta- 88.2 0.75 1.6E-05 32.2 3.7 38 94-131 3-40 (41)
27 KOG1293 Proteins containing ar 87.5 6 0.00013 45.4 11.9 77 243-328 414-492 (678)
28 PF11264 ThylakoidFormat: Thyl 87.3 9.8 0.00021 38.3 12.2 138 336-500 46-192 (216)
29 PRK13266 Thf1-like protein; Re 86.4 10 0.00022 38.4 11.8 141 336-500 51-197 (225)
30 KOG4189 Uncharacterized conser 86.1 4 8.6E-05 40.5 8.5 79 367-459 39-123 (209)
31 PF13764 E3_UbLigase_R4: E3 ub 84.1 39 0.00084 40.2 16.8 282 98-416 112-424 (802)
32 PLN03060 inositol phosphatase- 82.6 33 0.00072 34.4 13.3 132 336-500 49-187 (206)
33 KOG4199 Uncharacterized conser 80.8 30 0.00065 37.6 12.9 160 84-311 264-428 (461)
34 PF10165 Ric8: Guanine nucleot 80.3 55 0.0012 36.0 15.4 175 192-379 10-193 (446)
35 KOG4224 Armadillo repeat prote 80.2 10 0.00022 41.3 9.4 162 228-418 88-268 (550)
36 PF04821 TIMELESS: Timeless pr 76.9 49 0.0011 33.9 12.9 98 97-194 34-152 (266)
37 cd00256 VATPase_H VATPase_H, r 76.1 39 0.00085 37.3 12.6 123 177-310 69-197 (429)
38 PF05536 Neurochondrin: Neuroc 75.7 20 0.00044 40.5 10.6 73 248-328 98-170 (543)
39 PF06025 DUF913: Domain of Unk 74.6 20 0.00044 38.6 9.9 101 204-309 105-207 (379)
40 KOG4500 Rho/Rac GTPase guanine 74.1 51 0.0011 36.9 12.6 282 42-351 56-368 (604)
41 KOG4500 Rho/Rac GTPase guanine 69.6 1.7E+02 0.0036 33.1 15.3 242 50-309 159-413 (604)
42 PLN00047 photosystem II biogen 68.8 1.1E+02 0.0023 32.3 13.1 136 336-500 102-240 (283)
43 PF04826 Arm_2: Armadillo-like 66.4 61 0.0013 33.2 10.8 142 73-243 107-252 (254)
44 PF01365 RYDR_ITPR: RIH domain 64.3 31 0.00067 33.4 7.9 125 240-380 35-169 (207)
45 PF11841 DUF3361: Domain of un 60.7 1.1E+02 0.0024 29.6 10.7 127 97-241 5-137 (160)
46 PF13646 HEAT_2: HEAT repeats; 60.5 49 0.0011 26.6 7.3 29 105-133 1-30 (88)
47 KOG3665 ZYG-1-like serine/thre 59.3 3.2E+02 0.007 32.1 16.1 27 323-349 497-523 (699)
48 PF14664 RICTOR_N: Rapamycin-i 56.5 2.9E+02 0.0063 29.9 14.4 242 89-381 11-270 (371)
49 PF12726 SEN1_N: SEN1 N termin 54.7 30 0.00064 40.2 6.9 95 93-191 513-608 (727)
50 KOG4464 Signaling protein RIC- 53.6 96 0.0021 34.6 9.9 113 228-352 119-234 (532)
51 PF05536 Neurochondrin: Neuroc 52.1 4.1E+02 0.0088 30.3 20.8 296 76-383 113-496 (543)
52 PF11701 UNC45-central: Myosin 52.0 67 0.0014 30.2 7.7 116 219-349 18-138 (157)
53 KOG1789 Endocytosis protein RM 48.0 28 0.00061 42.7 5.3 108 88-218 2032-2143(2235)
54 PF04826 Arm_2: Armadillo-like 45.1 3.6E+02 0.0078 27.6 12.9 78 38-134 8-85 (254)
55 PF11864 DUF3384: Domain of un 45.0 69 0.0015 35.2 7.6 133 73-215 267-408 (464)
56 KOG0168 Putative ubiquitin fus 42.8 2.8E+02 0.0062 33.6 12.1 44 219-262 395-440 (1051)
57 PF02985 HEAT: HEAT repeat; I 42.4 30 0.00064 23.7 2.8 27 105-131 2-28 (31)
58 KOG1789 Endocytosis protein RM 41.0 1.6E+02 0.0034 36.8 9.8 122 178-351 1741-1865(2235)
59 PF06371 Drf_GBD: Diaphanous G 38.8 94 0.002 28.9 6.5 87 145-233 98-185 (187)
60 cd00197 VHS_ENTH_ANTH VHS, ENT 37.6 2.8E+02 0.006 24.2 10.5 102 126-233 4-113 (115)
61 KOG0946 ER-Golgi vesicle-tethe 36.7 2.5E+02 0.0053 33.9 10.3 150 94-257 156-324 (970)
62 PF12348 CLASP_N: CLASP N term 36.5 3.2E+02 0.007 26.2 10.0 162 94-283 42-206 (228)
63 KOG3678 SARM protein (with ste 36.1 1.2E+02 0.0025 34.6 7.4 111 142-266 168-279 (832)
64 PF00514 Arm: Armadillo/beta-c 35.6 86 0.0019 22.4 4.5 39 237-284 1-39 (41)
65 COG5064 SRP1 Karyopherin (impo 34.1 5.6E+02 0.012 28.3 11.8 250 74-348 168-476 (526)
66 PF14225 MOR2-PAG1_C: Cell mor 32.6 5.8E+02 0.012 26.4 11.8 69 205-286 111-182 (262)
67 PF13646 HEAT_2: HEAT repeats; 31.9 36 0.00078 27.4 2.2 32 103-134 31-62 (88)
68 PF08389 Xpo1: Exportin 1-like 31.0 1.6E+02 0.0035 25.8 6.4 124 91-230 19-148 (148)
69 PF09759 Atx10homo_assoc: Spin 30.6 2E+02 0.0043 25.8 6.8 64 181-248 5-72 (102)
70 PF01417 ENTH: ENTH domain; I 30.5 2.5E+02 0.0054 25.1 7.5 65 126-192 7-72 (125)
71 PF01365 RYDR_ITPR: RIH domain 29.8 1.6E+02 0.0035 28.5 6.7 101 289-412 34-153 (207)
72 PF11707 Npa1: Ribosome 60S bi 29.4 5.9E+02 0.013 26.7 11.2 127 251-383 4-146 (330)
73 KOG1788 Uncharacterized conser 28.8 1.3E+02 0.0027 37.5 6.5 81 227-307 663-783 (2799)
74 PF11841 DUF3361: Domain of un 28.3 88 0.0019 30.3 4.4 82 293-382 6-91 (160)
75 COG5064 SRP1 Karyopherin (impo 28.0 1.5E+02 0.0033 32.5 6.5 150 82-268 305-456 (526)
76 PF09450 DUF2019: Domain of un 27.9 48 0.001 30.0 2.4 34 95-128 37-73 (106)
77 PLN03060 inositol phosphatase- 26.5 1.8E+02 0.0038 29.4 6.3 38 271-308 68-113 (206)
78 COG4381 Mu-like prophage prote 26.5 37 0.0008 31.7 1.5 34 206-239 60-95 (135)
79 PF08569 Mo25: Mo25-like; Int 25.5 3.8E+02 0.0082 28.7 9.0 167 140-327 62-239 (335)
80 PF05004 IFRD: Interferon-rela 25.4 1.1E+02 0.0024 32.0 5.0 56 76-133 200-261 (309)
81 KOG2973 Uncharacterized conser 24.3 9.4E+02 0.02 26.2 12.8 162 106-298 6-173 (353)
82 cd08330 CARD_ASC_NALP1 Caspase 24.1 75 0.0016 27.0 2.8 44 304-349 35-78 (82)
83 KOG4464 Signaling protein RIC- 24.0 1E+03 0.022 26.9 11.9 116 263-380 104-228 (532)
84 KOG0946 ER-Golgi vesicle-tethe 23.6 1.4E+03 0.03 27.9 19.5 255 80-352 41-328 (970)
85 TIGR03060 PS_II_psb29 photosys 23.5 7.9E+02 0.017 25.0 12.1 48 271-318 70-125 (214)
86 PF11698 V-ATPase_H_C: V-ATPas 23.2 70 0.0015 29.5 2.6 39 92-130 75-113 (119)
87 PF04088 Peroxin-13_N: Peroxin 23.0 1.1E+02 0.0023 29.5 4.0 62 154-217 29-96 (158)
88 COG5231 VMA13 Vacuolar H+-ATPa 22.1 72 0.0016 34.5 2.8 42 90-131 386-427 (432)
89 cd01671 CARD Caspase activatio 22.1 85 0.0018 25.4 2.7 33 307-339 36-68 (80)
90 PF10952 DUF2753: Protein of u 22.0 1.1E+02 0.0023 29.0 3.5 36 88-123 83-122 (140)
91 PF11701 UNC45-central: Myosin 21.0 2.2E+02 0.0047 26.7 5.6 78 178-257 59-137 (157)
92 PF04011 LemA: LemA family; I 20.8 69 0.0015 30.8 2.2 45 62-109 80-124 (186)
93 PF04499 SAPS: SIT4 phosphatas 20.4 3.6E+02 0.0078 30.2 7.9 67 203-281 60-127 (475)
94 PF07757 AdoMet_MTase: Predict 20.1 2.3E+02 0.005 26.1 5.2 67 47-113 10-77 (112)
No 1
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.9e-141 Score=1096.27 Aligned_cols=509 Identities=47% Similarity=0.767 Sum_probs=468.3
Q ss_pred CCCCCccccccc---------cCCCCC--CchhHHHHHHhcc-cchhccCHHHHHHHHHHHHHHHHHhHHHHhcCCCCCc
Q 045086 3 SGGKRRRTDAVL---------SNGNDK--IDPSLLEALEKSQ-SSVEALDLRTVKKLVLSFERRLKENIEARLKYPDQPE 70 (522)
Q Consensus 3 ~~~~~~~~~~~~---------~~~~~~--~~~~~l~~~e~~~-~~~e~lD~~~lkklvl~fEk~i~kNqe~R~K~~ddP~ 70 (522)
.+-|||+.+++. .+|+++ .+.-..+.++++. .-.+-+|....+|||+.|||++++|||+|+||||+|+
T Consensus 13 ~~~KRp~d~~~~~~es~~~~kq~gs~~~ee~~~~~eeae~s~~~~L~~ld~~~~~klvl~~ekr~~~Nqe~RiK~~dnPe 92 (536)
T KOG2734|consen 13 RGIKRPADDADEPAESKMRQKQTGSDEWEEDMFVVEEAEKSKHNLLDILDTQEAKKLVLRFEKRIRKNQELRIKYPDNPE 92 (536)
T ss_pred cCCCCCCccccchhhhhhhhhhcCCCCCcchhhHHHhhhhhhhHHHHHHhhhhHHHHHHHHHHHhhhhHHhhccCCCCHH
Confidence 466888887642 333333 3444445555543 4455688889999999999999999999999999999
Q ss_pred cccccHhhHHHHHHhhhccccCCCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHH
Q 045086 71 KFADTEVDLHEELEKLKVLAGGPELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDAL 150 (522)
Q Consensus 71 KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL 150 (522)
|||+||+|||.+|++|+++||+|+|||.||+++||+||++||+|+||||+|+|+++|+||||+|+..|+++++..||+||
T Consensus 93 KFmeSE~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaL 172 (536)
T KOG2734|consen 93 KFMESEVDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDAL 172 (536)
T ss_pred HHHHhhccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhcccc-CCChhhhhHHHH
Q 045086 151 IENNVLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVR-EFDSNKQYASEI 229 (522)
Q Consensus 151 ~~~~~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k-~~d~Nk~YAsEi 229 (522)
++++++.+||||++||||+ +++|+.|||++|+++|||++++|++|..+|++ +++.|||+|++.+ .||.||+|||||
T Consensus 173 vdg~vlaLLvqnveRLdEs--vkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~YasEi 249 (536)
T KOG2734|consen 173 VDGQVLALLVQNVERLDES--VKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYASEI 249 (536)
T ss_pred HhccHHHHHHHHHHHhhhc--chhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHHHH
Confidence 9999999999999999999 99999999999999999999999999999977 8999999999998 499999999999
Q ss_pred HHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhc
Q 045086 230 LAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQ 309 (522)
Q Consensus 230 LaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlke 309 (522)
|+||+|+|.+||..+|.+||||.||+.||+||++||++.+|+|||||+||||||+||.|+||++|+++||+|||++|||+
T Consensus 250 Laillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~ 329 (536)
T KOG2734|consen 250 LAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE 329 (536)
T ss_pred HHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHhcCC--cchhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcch
Q 045086 310 KKSAYASAIRALDFAMTKY--PPACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSR 387 (522)
Q Consensus 310 kk~sr~~AlKvLD~Al~~~--~~~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~ 387 (522)
||.||++|+|||||||+|+ .+||+|||+++||||+||+|| |+|+ |..++..+..+++||||+||+||||+| .+.+
T Consensus 330 Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM-k~p~-k~~~~~~t~~e~eEhv~siiaSl~~~~-~~~~ 406 (536)
T KOG2734|consen 330 KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM-KTPL-KRKKRKISADEHEEHVCSILASLLRNL-DGVH 406 (536)
T ss_pred HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh-hCcc-chhcccCcHHHHHHHHHHHHHHHHHhc-cccH
Confidence 9999999999999999995 599999999999999999999 5565 445556788999999999999999999 5888
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCCh
Q 045086 388 RERLLSKFIENECEKIDRLMELYMRYSDRVRAETDRLNELELDDLEMDEEEKYNRKLESGLYTLQLIAVILGHLWCSEQP 467 (522)
Q Consensus 388 r~RlLaKFvE~d~EKvdRL~eL~~~Y~~rv~~~~~~~~~~~~~~~e~~e~e~yl~rLdaGLftLQ~id~Ila~l~~~~~~ 467 (522)
|.|+++|||||||||+|||++||.+|..+|+..+++-+. +..+.++.++.||++|||+|||+||.+++|+.|+| +.-+
T Consensus 407 r~R~l~KF~End~EKvdRl~el~lky~~~v~~~d~~~~~-d~~~~dd~~~~~~l~~l~~glF~lq~~~lIl~e~~-~~~~ 484 (536)
T KOG2734|consen 407 RQRLLRKFVENDFEKVDRLMELYLKYLIKVQGIDESQKL-DFIDEDDKEEKWYLQRLDHGLFTLQRLVLILSEVC-ANVV 484 (536)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHhhhHHHHhhh-ccCcccchhhhHHHHHhcccchHHHHHHHHHHHHH-hhhH
Confidence 999999999999999999999999999999987643322 22445567899999999999999999999999997 8889
Q ss_pred hHHHHHHHHHHhcCCChhHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHhh
Q 045086 468 QMRTRIELLLKQQKLTKKDVKDILQEYHDNIGDLDGPEEKERAQARIQKFISAF 521 (522)
Q Consensus 468 ~~~~~i~~lL~~~~~~~~~I~~~l~ey~~~lgd~~~~e~~~~~~~~i~~~~~~~ 521 (522)
.+++++.+++++++.+.+.++.++++|.+|+||+ ..+++..+..|..+++.|
T Consensus 485 ~~~~r~~~~~~~~~~s~~~~~~i~~ey~en~gd~--~~~r~~e~~~vl~l~~~f 536 (536)
T KOG2734|consen 485 TLKQRVMQILNMRGSSDKLLRNIIEEYAENLGDG--SYYREDEQPMILSLLESF 536 (536)
T ss_pred HHHHHHHHHHHccccccccchHHHHHhhhccCCc--cccChhhhhhhhhhcccC
Confidence 9999999999999999999999999999999985 889999999998887654
No 2
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=100.00 E-value=3.7e-42 Score=302.29 Aligned_cols=105 Identities=59% Similarity=0.952 Sum_probs=99.7
Q ss_pred CCchhHHHHHHhccc-chhccCHHHHHHHHHHHHHHHHHhHHHHhcCCCCCccccccHhhHHHHHHhhhccccCCCChHH
Q 045086 20 KIDPSLLEALEKSQS-SVEALDLRTVKKLVLSFERRLKENIEARLKYPDQPEKFADTEVDLHEELEKLKVLAGGPELYPD 98 (522)
Q Consensus 20 ~~~~~~l~~~e~~~~-~~e~lD~~~lkklvl~fEk~i~kNqe~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp~ 98 (522)
+.+.+|++.++.+++ ..+.+|++|+||++++|||++++||+||+||||||+||||||+|||++||+|++||++|+|||+
T Consensus 3 ~~~~~il~~~e~~~~~~~e~lD~~~lkklvl~fek~i~kN~e~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp~ 82 (108)
T PF08216_consen 3 EEREDILEIVEEAEEEEVEVLDEAWLKKLVLSFEKRINKNQEMRIKYPDDPEKFMDSEVDLDEEIKKLSVLATAPELYPE 82 (108)
T ss_pred hHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHhHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHccCChhHHHH
Confidence 346789999987765 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHhhcCCCchHHHHHH
Q 045086 99 VVNLNVIPSILGLLSHDNTDIAIDVV 124 (522)
Q Consensus 99 ~v~l~~v~sL~~LLsHeNtDIai~vi 124 (522)
||++||++||+|||+|||||||++||
T Consensus 83 lv~l~~v~sL~~LL~HeN~DIai~vi 108 (108)
T PF08216_consen 83 LVELGAVPSLLGLLSHENTDIAIDVI 108 (108)
T ss_pred HHHcCCHHHHHHHHCCCCcceehccC
Confidence 99999999999999999999999986
No 3
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.82 E-value=0.0019 Score=80.59 Aligned_cols=251 Identities=18% Similarity=0.170 Sum_probs=175.1
Q ss_pred HHHhhhccccCC--CCh--HHHHhcCChHHHHHhhcCCC-chHH--HHHHHHhhhhcccccccCCCchHHHHHHHHHhcC
Q 045086 82 ELEKLKVLAGGP--ELY--PDVVNLNVIPSILGLLSHDN-TDIA--IDVVHLLQDLTDEDVLEDNDEPARVLVDALIENN 154 (522)
Q Consensus 82 ~Ik~l~~La~~P--~LY--p~~v~l~~v~sL~~LLsHeN-tDIa--i~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~ 154 (522)
+.+.|--||.++ +.| ..++..|+|+.|+.+|...| .|-+ -.++-.|..|.... +..| ..+++++
T Consensus 119 AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~-----en~~----~~IIeaG 189 (2102)
T PLN03200 119 AAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST-----DGFW----SATLEAG 189 (2102)
T ss_pred HHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc-----cchH----HHHHHcC
Confidence 455666677776 777 45789999999999998765 2443 23345666666543 2233 3445668
Q ss_pred hHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHh
Q 045086 155 VLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILL 234 (522)
Q Consensus 155 ~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILL 234 (522)
.+..+|.-|+. . ++ .-..++..++-+++.-.++.+..+. +.+.++-|.+-++.......+.+|+=.|.-|.
T Consensus 190 aVp~LV~LLsS---~--d~---~lQ~eAa~aLa~Lass~ee~~~aVI-eaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLA 260 (2102)
T PLN03200 190 GVDILVKLLSS---G--NS---DAQANAASLLARLMMAFESSISKVL-DAGAVKQLLKLLGQGNEVSVRAEAAGALEALS 260 (2102)
T ss_pred CHHHHHHHHcC---C--CH---HHHHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHHHHHccCCChHHHHHHHHHHHHHh
Confidence 99999999852 2 22 3346677877788876777777676 56789999998875444467889999999999
Q ss_pred cCChHHHHHhhhhchHHHHHHHHh-hcc---------------------------------------cCCCC--------
Q 045086 235 QNSTANQKRLGQMNGVDVLLQAVA-MYK---------------------------------------SKDPK-------- 266 (522)
Q Consensus 235 Q~s~~nr~~~~~~dGiD~LL~~la-~Yr---------------------------------------krDP~-------- 266 (522)
.+++++|..+.+.+||..|++.+. +.+ -||+.
T Consensus 261 s~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gA 340 (2102)
T PLN03200 261 SQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGA 340 (2102)
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhh
Confidence 999999999999999999998775 211 11111
Q ss_pred ---------CCcHHHH-----------------------HHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcc-hhh
Q 045086 267 ---------TSDEEEM-----------------------LENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQK-KSA 313 (522)
Q Consensus 267 ---------~~eE~E~-----------------------mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkek-k~s 313 (522)
+..+.-. .+++-.+|.+++-.|.++..|.+.+|+..++-|++-. .-.
T Consensus 341 Layll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~ev 420 (2102)
T PLN03200 341 LAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADV 420 (2102)
T ss_pred HHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHH
Confidence 1111111 1334444555555566677777888888888888843 456
Q ss_pred hhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhhhc
Q 045086 314 YASAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMG 350 (522)
Q Consensus 314 r~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~FM~ 350 (522)
+.-|...|-|...++.+.+..+++.+|+..|..++..
T Consensus 421 Q~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s 457 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL 457 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC
Confidence 7777888888776778899999999999999888863
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.74 E-value=0.0077 Score=75.49 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=174.8
Q ss_pred HHHHHHhhhccccCCCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHH
Q 045086 79 LHEELEKLKVLAGGPELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLEL 158 (522)
Q Consensus 79 Ld~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~l 158 (522)
....+..|..|..+|.+=..|..-|++..|++||.+.++|+-.+++.-|..|++-+ .+.| .++++.+.+..
T Consensus 380 qe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-----~e~~----~aIi~~ggIp~ 450 (2102)
T PLN03200 380 QERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-----GGLW----EALGGREGVQL 450 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-----HHHH----HHHHHcCcHHH
Confidence 34456666667777877778888899999999999999999999999999999775 2234 56666789999
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCCh
Q 045086 159 LVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNST 238 (522)
Q Consensus 159 Lv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~ 238 (522)
||+.|..= ++. ....+...+-|+..-+++....++ +.+.+++|.+-+.... +.-+.-|+-.|+=|-.+++
T Consensus 451 LV~LL~s~-----s~~---iQ~~A~~~L~nLa~~ndenr~aIi-eaGaIP~LV~LL~s~~-~~iqeeAawAL~NLa~~~~ 520 (2102)
T PLN03200 451 LISLLGLS-----SEQ---QQEYAVALLAILTDEVDESKWAIT-AAGGIPPLVQLLETGS-QKAKEDSATVLWNLCCHSE 520 (2102)
T ss_pred HHHHHcCC-----CHH---HHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCcH
Confidence 99998752 222 223445556677665665555455 5779999999997543 2334456667777777788
Q ss_pred HHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhh---------------CChh--------------
Q 045086 239 ANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVL---------------MPLE-------------- 289 (522)
Q Consensus 239 ~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L---------------~~~~-------------- 289 (522)
.+|..+...++|..|+..+. ..|| +..++.-.+|++++ ..+.
T Consensus 521 qir~iV~~aGAIppLV~LL~---sgd~------~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnI 591 (2102)
T PLN03200 521 DIRACVESAGAVPALLWLLK---NGGP------KGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHV 591 (2102)
T ss_pred HHHHHHHHCCCHHHHHHHHh---CCCH------HHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 88888888888999988874 2232 33455555555443 2111
Q ss_pred -----hHHHHH----HhhhHHHHHHHHhcch-hhhhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhhhcC
Q 045086 290 -----NKERFV----KAEGVELMIIIMKQKK-SAYASAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMGK 351 (522)
Q Consensus 290 -----nk~~Fl----~~EGveLM~lmlkekk-~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~FM~k 351 (522)
+.+.+. ...||+.+.-+++.++ ..+..|..+|..-.++.+++|+.+|+++|+.++-.++...
T Consensus 592 lsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~ 663 (2102)
T PLN03200 592 LSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN 663 (2102)
T ss_pred HhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC
Confidence 111121 2469999999998764 6788888888777778889999999999999999888654
No 5
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.67 E-value=0.13 Score=59.35 Aligned_cols=264 Identities=18% Similarity=0.209 Sum_probs=174.9
Q ss_pred HHHHHhhhccccCCCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHH
Q 045086 80 HEELEKLKVLAGGPELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELL 159 (522)
Q Consensus 80 d~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lL 159 (522)
...+.-|..||++|..=-.+++-|+|+.|+.+|.++|.++.+.++.+|.-|+=-. ++. +.+.+.++++-|
T Consensus 267 rv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~------ENK----~~m~~~giV~kL 336 (708)
T PF05804_consen 267 RVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK------ENK----DEMAESGIVEKL 336 (708)
T ss_pred HHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH------HHH----HHHHHcCCHHHH
Confidence 3345557778999988888899999999999999999999999999999997543 233 444566887777
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChH
Q 045086 160 VQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTA 239 (522)
Q Consensus 160 v~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~ 239 (522)
+.-+.. . + ...+..+|.++=||- ++|++...++ +.++++-|...++. +..+.||--+|.-|-+ .++
T Consensus 337 ~kLl~s---~--~---~~l~~~aLrlL~NLS-fd~~~R~~mV-~~GlIPkLv~LL~d---~~~~~val~iLy~LS~-dd~ 402 (708)
T PF05804_consen 337 LKLLPS---E--N---EDLVNVALRLLFNLS-FDPELRSQMV-SLGLIPKLVELLKD---PNFREVALKILYNLSM-DDE 402 (708)
T ss_pred HHHhcC---C--C---HHHHHHHHHHHHHhC-cCHHHHHHHH-HCCCcHHHHHHhCC---CchHHHHHHHHHHhcc-CHh
Confidence 666532 1 2 246788999999975 6999999888 67799999988874 3456677666666655 567
Q ss_pred HHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcchhhhhhhHH
Q 045086 240 NQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQKKSAYASAIR 319 (522)
Q Consensus 240 nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkekk~sr~~AlK 319 (522)
+|..|+.-|.|..+++.+-.+ |...-+.| +--.++++-..+.|-+.+.++.|+..++...-. ..-+..+|
T Consensus 403 ~r~~f~~TdcIp~L~~~Ll~~----~~~~v~~e----liaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~--~~D~lLlK 472 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQMLLEN----SEEEVQLE----LIALLINLALNKRNAQLMCEGNGLQSLMKRALK--TRDPLLLK 472 (708)
T ss_pred hHHHHhhcchHHHHHHHHHhC----CCccccHH----HHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh--cccHHHHH
Confidence 999999899999999987544 22211222 444455555788899999999998866544322 22344456
Q ss_pred HHHHHhcCCc-chhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcchHHHHHHH
Q 045086 320 ALDFAMTKYP-PACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSRRERLLSK 394 (522)
Q Consensus 320 vLD~Al~~~~-~~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r~RlLaK 394 (522)
++--. +.++ +.=..|++..| .|-.+.+. ....+.-=+++||++.|-- | +-...+++.+
T Consensus 473 lIRNi-S~h~~~~k~~f~~~i~--~L~~~v~~-----------~~~ee~~vE~LGiLaNL~~--~-~ld~~~ll~~ 531 (708)
T PF05804_consen 473 LIRNI-SQHDGPLKELFVDFIG--DLAKIVSS-----------GDSEEFVVECLGILANLTI--P-DLDWAQLLQE 531 (708)
T ss_pred HHHHH-HhcCchHHHHHHHHHH--HHHHHhhc-----------CCcHHHHHHHHHHHHhccc--C-CcCHHHHHHh
Confidence 65443 2232 33334555322 22222211 1123455567777776632 2 3335555543
No 6
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.56 E-value=0.013 Score=67.22 Aligned_cols=301 Identities=20% Similarity=0.250 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHhHHHHhcCCC-----CCccccccHh--hHHHHHHhhhccccCCCChHHHHhcCChHHHHHhhcCCC
Q 045086 44 VKKLVLSFERRLKENIEARLKYPD-----QPEKFADTEV--DLHEELEKLKVLAGGPELYPDVVNLNVIPSILGLLSHDN 116 (522)
Q Consensus 44 lkklvl~fEk~i~kNqe~R~K~~d-----dP~KFmdSE~--dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeN 116 (522)
+.=+++.|=+++.-..|-+.+-.. -=.||++|+- =++.+++-|..||-.|++=+.+|+.|+++.|++||.-+|
T Consensus 306 llil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 306 LLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc
Confidence 333444555555533332222222 2347777653 467889999999999999999999999999999998654
Q ss_pred chHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhH
Q 045086 117 TDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSV 196 (522)
Q Consensus 117 tDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~ 196 (522)
..-.++.+|.=|+..|- .+..+ ...+.+..+++-|-.-.+.. .+ ...+++.=||.. +|..
T Consensus 386 --~~~val~iLy~LS~dd~-------~r~~f---~~TdcIp~L~~~Ll~~~~~~-v~------~eliaL~iNLa~-~~rn 445 (708)
T PF05804_consen 386 --FREVALKILYNLSMDDE-------ARSMF---AYTDCIPQLMQMLLENSEEE-VQ------LELIALLINLAL-NKRN 445 (708)
T ss_pred --hHHHHHHHHHHhccCHh-------hHHHH---hhcchHHHHHHHHHhCCCcc-cc------HHHHHHHHHHhc-CHHH
Confidence 44557888888887651 22111 12245566666554432220 11 235788888875 8888
Q ss_pred HHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHh
Q 045086 197 AELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLEN 276 (522)
Q Consensus 197 a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mEN 276 (522)
|..+|.. +-++-|++|.-+.. |+- .-=++-=+-|+++.++..|. +=|.-|..++.. ++++|++=.
T Consensus 446 aqlm~~g-~gL~~L~~ra~~~~-D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~--------~~~ee~~vE 510 (708)
T PF05804_consen 446 AQLMCEG-NGLQSLMKRALKTR-DPL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSS--------GDSEEFVVE 510 (708)
T ss_pred HHHHHhc-CcHHHHHHHHHhcc-cHH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhc--------CCcHHHHHH
Confidence 8888854 55789999875421 211 11244455677767776665 556666666532 346688888
Q ss_pred HHHHHHHhhCChhhHHHHHHh-hhHHHHHHHHhcchhhhhhhHHHHHHHhc-CCcchhhhHHhhhc-hhhHHHhhhcCCC
Q 045086 277 LFDSLCCVLMPLENKERFVKA-EGVELMIIIMKQKKSAYASAIRALDFAMT-KYPPACERFVDVLG-LKTAFAAFMGKIP 353 (522)
Q Consensus 277 lFd~Lcs~L~~~~nk~~Fl~~-EGveLM~lmlkekk~sr~~AlKvLD~Al~-~~~~~C~~fVe~~G-LktlF~~FM~k~~ 353 (522)
+..+|+.+-....+-.++++. -=++.+..+|+.+...-...|-+.=++=+ .+.+.|-.++-.-| ..++..+|..|
T Consensus 511 ~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~k-- 588 (708)
T PF05804_consen 511 CLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAK-- 588 (708)
T ss_pred HHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhh--
Confidence 999999888766667777764 55677777787664433344444422211 13557777665556 55666888644
Q ss_pred CcccccchhhhHHHHHHHHHHHHHHhccCCCcchHHHHH
Q 045086 354 VNKKNKKERYQEELEERLVSLIASLFGGILRGSRRERLL 392 (522)
Q Consensus 354 ~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r~RlL 392 (522)
.|++|.|+-|++.+.+.+.-++.|.-++
T Consensus 589 -----------qeDdE~VlQil~~f~~ll~h~~tr~~ll 616 (708)
T PF05804_consen 589 -----------QEDDEIVLQILYVFYQLLFHEETREVLL 616 (708)
T ss_pred -----------CchHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 4688899888887777765444465444
No 7
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.38 E-value=0.026 Score=62.21 Aligned_cols=175 Identities=20% Similarity=0.233 Sum_probs=124.0
Q ss_pred HHhhhccccCCC-ChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHH
Q 045086 83 LEKLKVLAGGPE-LYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQ 161 (522)
Q Consensus 83 Ik~l~~La~~P~-LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~ 161 (522)
++.+.-++++++ ..+.++..+.++.++.+|.|+|+.++..++.+|..+.... .+. +.++++.+...|.+
T Consensus 98 l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~------~~~----~~l~~~~~~~~L~~ 167 (503)
T PF10508_consen 98 LKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHP------EGL----EQLFDSNLLSKLKS 167 (503)
T ss_pred HHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc------hhH----HHHhCcchHHHHHH
Confidence 444556667775 4777889999999999999999999999999999998643 223 34555555444444
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHH
Q 045086 162 NIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQ 241 (522)
Q Consensus 162 nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr 241 (522)
.+.+= ++.-+ +.++.++=++....|+... .+.++++++-+++-++.+.+- =+.=|.|+|+-|.+ ++.+.
T Consensus 168 l~~~~-----~~~vR---~Rv~el~v~i~~~S~~~~~-~~~~sgll~~ll~eL~~dDiL-vqlnalell~~La~-~~~g~ 236 (503)
T PF10508_consen 168 LMSQS-----SDIVR---CRVYELLVEIASHSPEAAE-AVVNSGLLDLLLKELDSDDIL-VQLNALELLSELAE-TPHGL 236 (503)
T ss_pred HHhcc-----CHHHH---HHHHHHHHHHHhcCHHHHH-HHHhccHHHHHHHHhcCccHH-HHHHHHHHHHHHHc-ChhHH
Confidence 44331 22223 4566677788888888887 455688999999998873311 15568899999999 78888
Q ss_pred HHhhhhchHHHHHHHHhhcccCCC-C----CCcHHHHHHhHHH
Q 045086 242 KRLGQMNGVDVLLQAVAMYKSKDP-K----TSDEEEMLENLFD 279 (522)
Q Consensus 242 ~~~~~~dGiD~LL~~la~YrkrDP-~----~~eE~E~mENlFd 279 (522)
.-+.+.+.++.|...+..- +.|| . -.-.-.|..|++-
T Consensus 237 ~yL~~~gi~~~L~~~l~~~-~~dp~~~~~~l~g~~~f~g~la~ 278 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDS-EEDPRLSSLLLPGRMKFFGNLAR 278 (503)
T ss_pred HHHHhCCHHHHHHHHHhcc-ccCCcccchhhhhHHHHHHHHHh
Confidence 8888888899999888766 6677 1 2233455555554
No 8
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.043 Score=58.05 Aligned_cols=210 Identities=14% Similarity=0.225 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHH
Q 045086 175 EMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLL 254 (522)
Q Consensus 175 e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL 254 (522)
+.+-...+|--+|-+++ +=+.|..++.-.++.+-+. .++. .-..=|-+|+-+++-++||++..+..+-+.+|...|+
T Consensus 96 ~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~-~l~~-~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLG-YLEN-SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHH-HhcC-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 33344445555555555 4467778886665555444 4432 2233488999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCCcHHHHHHhHHHHHHHhh-CChhhHHHHHHhhhHHHHHHHHhcc---hhhhhhhHHHHHHHhcCCcc
Q 045086 255 QAVAMYKSKDPKTSDEEEMLENLFDSLCCVL-MPLENKERFVKAEGVELMIIIMKQK---KSAYASAIRALDFAMTKYPP 330 (522)
Q Consensus 255 ~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L-~~~~nk~~Fl~~EGveLM~lmlkek---k~sr~~AlKvLD~Al~~~~~ 330 (522)
++++ +-+|.. ---+++=++||++ ..+++...|++.-|.+-..-.|..+ .+.+.-|+-++.+-+...+.
T Consensus 173 ~~ls---~~~~~~-----~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 173 KILS---SDDPNT-----VRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHc---cCCCch-----HHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 9998 444432 1237777888888 5889999999999999888888874 57888999999999988777
Q ss_pred hhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcchHHHHHHHhhhhhhHHHHHHHH
Q 045086 331 ACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSRRERLLSKFIENECEKIDRLME 408 (522)
Q Consensus 331 ~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r~RlLaKFvE~d~EKvdRL~e 408 (522)
.|. ++-..|....--.+- ..-+.+.-||.+.-+-++++.++.+. -.++...+.|..+++.-.+..
T Consensus 245 ~~d-~~~~~~f~~~~~~l~-----------~~l~~~~~e~~l~~~l~~l~~~~~~~-~~~~~~~~l~e~l~~~~q~~~ 309 (342)
T KOG2160|consen 245 DED-IASSLGFQRVLENLI-----------SSLDFEVNEAALTALLSLLSELSTRK-ELFVSLLNLEELLKSLIQIIS 309 (342)
T ss_pred hhh-HHHHhhhhHHHHHHh-----------hccchhhhHHHHHHHHHHHHHHhhcc-hhhhhhhhHHHHHHHHHHHHH
Confidence 777 333333222221111 12345667788887778777775433 455556666666655555554
No 9
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.68 E-value=0.02 Score=48.19 Aligned_cols=117 Identities=19% Similarity=0.268 Sum_probs=86.8
Q ss_pred HHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhhcCCCCChhHHH
Q 045086 98 DVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRLSDADSDPDEMA 177 (522)
Q Consensus 98 ~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~~e~e~~ 177 (522)
++++.|+++.|+.+|.|.|.++...++..|..++... ++.. ..+++.++++.+++.|.. . +..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-----~~~~----~~~~~~~~i~~l~~~l~~---~-----~~~ 64 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGN-----NDNI----QAVVEAGGLPALVQLLKS---E-----DEE 64 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-----HHHH----HHHHHCCChHHHHHHHhC---C-----CHH
Confidence 5789999999999999999999999999999998863 1222 444566888888887642 2 345
Q ss_pred HHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHH
Q 045086 178 AVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAIL 233 (522)
Q Consensus 178 gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaIL 233 (522)
-+.++++.+-||+.-.|.....+. +.++++.|++.+.... ..-+.+|.-+|.-|
T Consensus 65 v~~~a~~~L~~l~~~~~~~~~~~~-~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l 118 (120)
T cd00020 65 VVKAALWALRNLAAGPEDNKLIVL-EAGGVPKLVNLLDSSN-EDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHH-HCCChHHHHHHHhcCC-HHHHHHHHHHHHHh
Confidence 667899999999986666555554 6679999999997652 22345565555544
No 10
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.05 E-value=0.51 Score=48.64 Aligned_cols=226 Identities=19% Similarity=0.185 Sum_probs=125.4
Q ss_pred hHHHHHhhcC--CCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhc---ChHHHHHHHhhhhcCCCCChhHHHHH
Q 045086 105 IPSILGLLSH--DNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIEN---NVLELLVQNIQRLSDADSDPDEMAAV 179 (522)
Q Consensus 105 v~sL~~LLsH--eNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~---~~~~lLv~nL~RldE~~~~e~e~~gV 179 (522)
+..++.||.+ .|.|+.--|+.++.|+...+. .....+.. +-+. ..+..++. +-+. .|..-.
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-----~~~~~~~~-~~~~~~~~~~~~fl~----ll~~----~D~~i~ 122 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-----SRVELFLE-LAKQDDSDPYSPFLK----LLDR----NDSFIQ 122 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SS-----SSHHHHHH-HHH-TTH--HHHHHH----H-S-----SSHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-----HHHHHHHH-hcccccchhHHHHHH----HhcC----CCHHHH
Confidence 4455566655 489999999999999998873 12222222 2221 12333333 3222 255556
Q ss_pred HHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhh---hhHHHHHHHHhcCChHHHHHhhhhchHHHHHHH
Q 045086 180 YNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNK---QYASEILAILLQNSTANQKRLGQMNGVDVLLQA 256 (522)
Q Consensus 180 ~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk---~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~ 256 (522)
+-+.-++=+++...|.-..... .++++|+++-++...-.++. ..|...|+.||. +++.|..|.+.+||..|...
T Consensus 123 ~~a~~iLt~Ll~~~~~~~~~~~--~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~i 199 (312)
T PF03224_consen 123 LKAAFILTSLLSQGPKRSEKLV--KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDI 199 (312)
T ss_dssp HHHHHHHHHHHTSTTT--HHHH--HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccccchH--HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHH
Confidence 6677777777776665443322 23445555444443212222 678888999995 89999999999999999998
Q ss_pred HhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcc-h-hhhhhhHHHHHHHhcCC-cchhh
Q 045086 257 VAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQK-K-SAYASAIRALDFAMTKY-PPACE 333 (522)
Q Consensus 257 la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkek-k-~sr~~AlKvLD~Al~~~-~~~C~ 333 (522)
+......+.. --...+-++.=|+=.+=++++.-..|.+..=|.++..++|.- | .--+.++-+|=--++.. ..+|.
T Consensus 200 L~~~~~~~~~--~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~ 277 (312)
T PF03224_consen 200 LRKQATNSNS--SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIE 277 (312)
T ss_dssp HH-----------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred HHhhcccCCC--CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHH
Confidence 8633222222 223344444444444446788888887777555556666642 1 34445555555555443 34899
Q ss_pred hHHhhhchhhHHHhhh
Q 045086 334 RFVDVLGLKTAFAAFM 349 (522)
Q Consensus 334 ~fVe~~GLktlF~~FM 349 (522)
..|+..+++++=.+--
T Consensus 278 ~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 278 LMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHH-HHHHHHHHHS
T ss_pred HHHHccHHHHHHHHhc
Confidence 9999999998854443
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.04 E-value=0.13 Score=43.33 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=90.0
Q ss_pred hhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCC-hhhHHHHHHhhhHHHHHHHHhcc-hhhhhhhHHHH
Q 045086 244 LGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMP-LENKERFVKAEGVELMIIIMKQK-KSAYASAIRAL 321 (522)
Q Consensus 244 ~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~-~~nk~~Fl~~EGveLM~lmlkek-k~sr~~AlKvL 321 (522)
+.+.++|..|++.+..+. .+..++.+.+|+.+-.. |+++..|++..|++.++.+|... ...+..|+.+|
T Consensus 3 ~~~~~~i~~l~~~l~~~~---------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L 73 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD---------ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWAL 73 (120)
T ss_pred HHHcCChHHHHHHHHcCC---------HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHH
Confidence 345678999999885432 57788999999988866 89999999999999999999975 35667777777
Q ss_pred HHHhcCCcchhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHh
Q 045086 322 DFAMTKYPPACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLF 379 (522)
Q Consensus 322 D~Al~~~~~~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLl 379 (522)
-.-..+++.+...+++.++++.+..++... ..+..++.+.++.+|+
T Consensus 74 ~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~------------~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 74 RNLAAGPEDNKLIVLEAGGVPKLVNLLDSS------------NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHccCcHHHHHHHHHCCChHHHHHHHhcC------------CHHHHHHHHHHHHHhh
Confidence 776666677888899998888888876532 2356678888888775
No 12
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.85 E-value=0.48 Score=48.80 Aligned_cols=201 Identities=20% Similarity=0.247 Sum_probs=117.0
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhh-----chHHHHHhhccccCCChhhhhHHHHH
Q 045086 156 LELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERT-----KLLRWLLGKIKVREFDSNKQYASEIL 230 (522)
Q Consensus 156 ~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t-----~ll~wLL~Ri~~k~~d~Nk~YAsEiL 230 (522)
..++++-|..+.. ..+-|.++|.+|..|++.+|+.+..+..-+ ..+..+++-+. +.=..-..-|+-+|
T Consensus 57 ~~~~l~lL~~~~~------~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~-~~D~~i~~~a~~iL 129 (312)
T PF03224_consen 57 ASLFLNLLNKLSS------NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD-RNDSFIQLKAAFIL 129 (312)
T ss_dssp -----HHHHHH---------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC------cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc-CCCHHHHHHHHHHH
Confidence 3456666666611 235678899999999999998777666522 25666777444 33223355689999
Q ss_pred HHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcc
Q 045086 231 AILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQK 310 (522)
Q Consensus 231 aILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkek 310 (522)
+.|+=.++....... .+-+..+++.++. . .+.+..++..-...||..+|..++.|..|.+..||.....+++..
T Consensus 130 t~Ll~~~~~~~~~~~-~~~l~~ll~~L~~----~-l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~ 203 (312)
T PF03224_consen 130 TSLLSQGPKRSEKLV-KEALPKLLQWLSS----Q-LSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQ 203 (312)
T ss_dssp HHHHTSTTT--HHHH-HHHHHHHHHHHH-----T-T-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH--
T ss_pred HHHHHcCCccccchH-HHHHHHHHHHHHH----h-hcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhh
Confidence 999876665553322 2334555555554 1 234667778899999999999999999999999999999999522
Q ss_pred -hhhhhhhHHHHHHH------hcCCcchhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCC
Q 045086 311 -KSAYASAIRALDFA------MTKYPPACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGIL 383 (522)
Q Consensus 311 -k~sr~~AlKvLD~A------l~~~~~~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~ 383 (522)
..+.+..+-++=++ ||-.++.++.|+... ++|.++.-.+. -.-|=|+-|.-+-|+||-
T Consensus 204 ~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~----~i~~L~~i~~~-----------~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 204 ATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY----LIPLLADILKD-----------SIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp -------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS----HHHHHHHHHHH-------------SHHHHHHHHHHHHHTT
T ss_pred cccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc----hHHHHHHHHHh-----------cccchHHHHHHHHHHHHH
Confidence 22333333333333 344677888887776 77777643211 112456666666666665
Q ss_pred C
Q 045086 384 R 384 (522)
Q Consensus 384 ~ 384 (522)
.
T Consensus 269 ~ 269 (312)
T PF03224_consen 269 S 269 (312)
T ss_dssp S
T ss_pred h
Confidence 3
No 13
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.35 E-value=0.32 Score=49.83 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=65.0
Q ss_pred HHhHHHHH-HHhhCChhhHHHHHHhhhHHHHHHHHhc--chhhhhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhhhc
Q 045086 274 LENLFDSL-CCVLMPLENKERFVKAEGVELMIIIMKQ--KKSAYASAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMG 350 (522)
Q Consensus 274 mENlFd~L-cs~L~~~~nk~~Fl~~EGveLM~lmlke--kk~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~FM~ 350 (522)
+-|..+.| .++|.+|+-|..|-...++++++.++.. ...-...+|.+|=++|-+++.|+..|-+..||.+|.++|-.
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 55544444 3448999999999999999999999942 34556678999999999999999999999999999999965
Q ss_pred C
Q 045086 351 K 351 (522)
Q Consensus 351 k 351 (522)
+
T Consensus 188 ~ 188 (257)
T PF08045_consen 188 K 188 (257)
T ss_pred c
Confidence 4
No 14
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.03 E-value=0.22 Score=51.02 Aligned_cols=112 Identities=20% Similarity=0.332 Sum_probs=83.4
Q ss_pred HHHHHhhccccC---CChhhhhHH--HHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHH
Q 045086 207 LRWLLGKIKVRE---FDSNKQYAS--EILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSL 281 (522)
Q Consensus 207 l~wLL~Ri~~k~---~d~Nk~YAs--EiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~L 281 (522)
+.|++.+..... ...+.+.+. .+|.=++.-.+..|..|+...+|..||..+ +|... .+..-++-++|
T Consensus 87 l~~l~~~~~~~~~~~~~~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL------~~~~~--~~i~~a~L~tL 158 (257)
T PF08045_consen 87 LDRLLGRGSHIDGDSPSNDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLL------SPSNP--PAIQSACLDTL 158 (257)
T ss_pred HHHHHhhcccccCcccchhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHh------ccCCC--chHHHHHHHHH
Confidence 444444554222 233445544 777778888999999999999999999999 33322 23334567776
Q ss_pred HHhh-CChhhHHHHHHhhhHHHHHHHHhcchhhhhhhHHHHHHHhc
Q 045086 282 CCVL-MPLENKERFVKAEGVELMIIIMKQKKSAYASAIRALDFAMT 326 (522)
Q Consensus 282 cs~L-~~~~nk~~Fl~~EGveLM~lmlkekk~sr~~AlKvLD~Al~ 326 (522)
.++| ..|+|...|-+..|++-...++|.+...+..=+|++-|-+.
T Consensus 159 v~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 159 VCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYF 204 (257)
T ss_pred HHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHH
Confidence 6655 79999999999999999999999998888888999888653
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=4.3 Score=43.73 Aligned_cols=241 Identities=16% Similarity=0.206 Sum_probs=154.3
Q ss_pred HHHHHhhhccccCCCC-hHHHHhcCChHHHHHhhcCCC-chHHHHHHHHhhhhcccccc-cCCCchHHHHHHHHHhcChH
Q 045086 80 HEELEKLKVLAGGPEL-YPDVVNLNVIPSILGLLSHDN-TDIAIDVVHLLQDLTDEDVL-EDNDEPARVLVDALIENNVL 156 (522)
Q Consensus 80 d~~Ik~l~~La~~P~L-Yp~~v~l~~v~sL~~LLsHeN-tDIai~vi~lL~ELtD~d~~-~e~~e~~~~Lv~aL~~~~~~ 156 (522)
+..|+-+.--+.--|. -..|++++..+.+.+-|.|+- +|.+-+..+.|+=|+-+|.. ... ..+-.-...+...+++
T Consensus 165 ~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f-g~ah~hAr~ia~e~~l 243 (461)
T KOG4199|consen 165 LLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF-GQAHGHARTIAKEGIL 243 (461)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec-chhhHHHHHHHHhhhH
Confidence 4444444444444444 567889999999998886665 55888888888887766543 111 1122222233333456
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHH--h
Q 045086 157 ELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAIL--L 234 (522)
Q Consensus 157 ~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaIL--L 234 (522)
..|+.-|.-.-..+ .=.+..+-..+|+ ++.++|..++. .+=+.-|++-|....-++||-.+-+.|+.| |
T Consensus 244 ~~L~Eal~A~~dp~-~L~~l~~tl~~lA-------Vr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 244 TALTEALQAGIDPD-SLVSLSTTLKALA-------VRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHHHHHHccCCcc-HHHHHHHHHHHHH-------HHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence 66666665443321 2234444444433 57788888874 455778888888878889998899998887 5
Q ss_pred cCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHH-hhCChhhHHHHHHhhhHHHHHHHHhcc---
Q 045086 235 QNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCC-VLMPLENKERFVKAEGVELMIIIMKQK--- 310 (522)
Q Consensus 235 Q~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs-~L~~~~nk~~Fl~~EGveLM~lmlkek--- 310 (522)
-+|+.++..+.+..|.|.+.+.+-.+- .||- ..+-..-|+|- +|..|+|-.+|.++=|-++.+--||.-
T Consensus 315 AG~DsvKs~IV~~gg~~~ii~l~~~h~-~~p~------Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~ 387 (461)
T KOG4199|consen 315 AGSDSVKSTIVEKGGLDKIITLALRHS-DDPL------VIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVA 387 (461)
T ss_pred hCCCchHHHHHHhcChHHHHHHHHHcC-CChH------HHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHH
Confidence 688999999999999999988765543 2332 22333344443 367999999999999999999888852
Q ss_pred h-hhhhhhHHHHHHHhcCCcchhhhHHhh
Q 045086 311 K-SAYASAIRALDFAMTKYPPACERFVDV 338 (522)
Q Consensus 311 k-~sr~~AlKvLD~Al~~~~~~C~~fVe~ 338 (522)
+ +.|..+--+=+-+. .+..+|+-.+.-
T Consensus 388 a~vQrnac~~IRNiv~-rs~~~~~~~l~~ 415 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVV-RSAENRTILLAN 415 (461)
T ss_pred HHHHHHHHHHHHHHHH-hhhhccchHHhc
Confidence 2 34444433333332 255677776654
No 16
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.45 E-value=1.4 Score=49.20 Aligned_cols=241 Identities=20% Similarity=0.254 Sum_probs=150.4
Q ss_pred HHhcCCCCCccccccHhhHHHHHHhhhccccCCCChHHHHhc-CChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCC
Q 045086 61 ARLKYPDQPEKFADTEVDLHEELEKLKVLAGGPELYPDVVNL-NVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDN 139 (522)
Q Consensus 61 ~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l-~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~ 139 (522)
++.-.+++|. ..+.-..=.|+.|..+++-=|.|... .+++.|+-||-|...++..+++-.|+.|||--
T Consensus 200 l~~l~~~~~~------~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~----- 268 (514)
T KOG0166|consen 200 LRLLNKSDKL------SMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS----- 268 (514)
T ss_pred HHHhccccch------HHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-----
Confidence 4556666662 23455666777788888777777755 78999999999999999999999999999864
Q ss_pred CchHHHHHHHHHhcChHHHHHHHhhhhcCC--------------CCChhHHHHHHH--HHHHHHhhhccC------hhHH
Q 045086 140 DEPARVLVDALIENNVLELLVQNIQRLSDA--------------DSDPDEMAAVYN--TLATIENLIEVK------PSVA 197 (522)
Q Consensus 140 ~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~--------------~~~e~e~~gV~~--~L~iiENl~e~~------p~~a 197 (522)
..-+..+++.+++..||..|.-..-. . +++..+.|-+ .|.++-|++.-. .+.|
T Consensus 269 ----ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG-~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAc 343 (514)
T KOG0166|consen 269 ----NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG-SDEQTQVVINSGALPVLSNLLSSSPKESIKKEAC 343 (514)
T ss_pred ----hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec-cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHH
Confidence 22456667779999999998766531 1 4566777766 788888888832 3333
Q ss_pred HHHhh-------------hhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHh-hhhchHHHHHHHHhhcccC
Q 045086 198 ELVCE-------------RTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRL-GQMNGVDVLLQAVAMYKSK 263 (522)
Q Consensus 198 ~~~~~-------------~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~-~~~dGiD~LL~~la~Yrkr 263 (522)
-.+.+ ++++++||+.-++..+|+.-|--| =.++=+.+++...+..+ .+.+-|.-|-..| .+.
T Consensus 344 W~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa-waIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~-- 419 (514)
T KOG0166|consen 344 WTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA-WAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCP-- 419 (514)
T ss_pred HHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH-HHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCC--
Confidence 22221 567999999999988887665433 33455555555444222 2222233222222 110
Q ss_pred CCCCCcHHHHHHhHHHHHHHhhCChhhHH---------HHHHhhhHHHHHHHHh-cchhhhhhhHHHHHHHhcC
Q 045086 264 DPKTSDEEEMLENLFDSLCCVLMPLENKE---------RFVKAEGVELMIIIMK-QKKSAYASAIRALDFAMTK 327 (522)
Q Consensus 264 DP~~~eE~E~mENlFd~Lcs~L~~~~nk~---------~Fl~~EGveLM~lmlk-ekk~sr~~AlKvLD~Al~~ 327 (522)
|-. .+.+++|+|-.+|...+... .--+++|++.|-.+=. +.---+..|++++|.=.++
T Consensus 420 -----D~~-ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 420 -----DVK-IILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred -----ChH-HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 111 14455555555544333222 2456777776644433 2346688888888876553
No 17
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=93.52 E-value=12 Score=41.15 Aligned_cols=284 Identities=16% Similarity=0.159 Sum_probs=158.9
Q ss_pred CChHHHHHhhc-CCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHh-cChHHHHHHHhhhhcCCCCChhHHHHHH
Q 045086 103 NVIPSILGLLS-HDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIE-NNVLELLVQNIQRLSDADSDPDEMAAVY 180 (522)
Q Consensus 103 ~~v~sL~~LLs-HeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~-~~~~~lLv~nL~RldE~~~~e~e~~gV~ 180 (522)
.++..+++||+ =.|.|+.--|+.++.||...+ +.-+..+.+.... .+.....+.-|.+ +|.-=++
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-----~~~~~~f~~~~~~~~~~~~~fl~lL~~--------~d~~i~~ 119 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-----DTRVKLFHDDALLKKKTWEPFFNLLNR--------QDQFIVH 119 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-----hHHHHHHHHHhhccccchHHHHHHHcC--------CchhHHH
Confidence 34566777884 467999999999999998875 2234444443221 2333333333221 2334455
Q ss_pred HHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhc
Q 045086 181 NTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMY 260 (522)
Q Consensus 181 ~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~Y 260 (522)
.++.++-.++...|.-..... ...+++||.+.++...-..=..-|.-.|+.||. .++.|..|.+.+|+..|...|...
T Consensus 120 ~a~~iLt~l~~~~~~~~~~~~-l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~ 197 (429)
T cd00256 120 MSFSILAKLACFGLAKMEGSD-LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNA 197 (429)
T ss_pred HHHHHHHHHHhcCccccchhH-HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhc
Confidence 677777777776554222111 223788999888765212223345677888887 678898998889999999999643
Q ss_pred ccCCCCCCcHHHHHHhHHHHH-HHhh--CChhhHHHHHHhhhHHHHHHHHhcch--hhhhhhHHHHHHHhc----CC--c
Q 045086 261 KSKDPKTSDEEEMLENLFDSL-CCVL--MPLENKERFVKAEGVELMIIIMKQKK--SAYASAIRALDFAMT----KY--P 329 (522)
Q Consensus 261 rkrDP~~~eE~E~mENlFd~L-cs~L--~~~~nk~~Fl~~EGveLM~lmlkekk--~sr~~AlKvLD~Al~----~~--~ 329 (522)
. . -++=.|.++ |--+ ++++....+.+..=|.+++-++|.-. ..-+.++-+|---++ ++ .
T Consensus 198 ~----~------~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~ 267 (429)
T cd00256 198 T----L------GFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKK 267 (429)
T ss_pred c----c------cHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhh
Confidence 2 1 122234333 3222 56666666666556666666766421 233344443333333 11 2
Q ss_pred chhhhHHhhhchhhHHHhhhcCCCC----------cc-cccchhhhHHHHHHHHHHHHHHhccCCCc-ch--HHHHHHHh
Q 045086 330 PACERFVDVLGLKTAFAAFMGKIPV----------NK-KNKKERYQEELEERLVSLIASLFGGILRG-SR--RERLLSKF 395 (522)
Q Consensus 330 ~~C~~fVe~~GLktlF~~FM~k~~~----------~k-~~kk~~~~~e~eEhvisIiaSLlr~l~~~-s~--r~RlLaKF 395 (522)
..|...|+.+.++++=.+-.+|..= .. -...-..-...+|..--+.+..|+.-|.- |+ =.-=..||
T Consensus 268 ~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf 347 (429)
T cd00256 268 TAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRL 347 (429)
T ss_pred hHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHH
Confidence 3567778776666553333332110 00 00000011123444445555555554432 22 23456789
Q ss_pred hhhhhHHHHHHHHHHH
Q 045086 396 IENECEKIDRLMELYM 411 (522)
Q Consensus 396 vE~d~EKvdRL~eL~~ 411 (522)
-||+|+=+.+|+++-.
T Consensus 348 ~~~~~~llk~L~~iL~ 363 (429)
T cd00256 348 NEKNYELLKILIHLLE 363 (429)
T ss_pred HhcchHHHHHHHHHHh
Confidence 9999999999998863
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=92.96 E-value=1.8 Score=50.05 Aligned_cols=290 Identities=21% Similarity=0.245 Sum_probs=156.8
Q ss_pred CCccccccHhhHHHHHHhhhccccCCC------ChH------------HHHhcCChHHHHHhhcCCCchHHHHHHHHhhh
Q 045086 68 QPEKFADTEVDLHEELEKLKVLAGGPE------LYP------------DVVNLNVIPSILGLLSHDNTDIAIDVVHLLQD 129 (522)
Q Consensus 68 dP~KFmdSE~dLd~~Ik~l~~La~~P~------LYp------------~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~E 129 (522)
+|- | -...+|.+.|+=|. +..|. -|= .--++|+++-|++||.|+|.++--.|.--|+-
T Consensus 226 ~p~-~-w~d~~lpe~i~mL~--~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRN 301 (717)
T KOG1048|consen 226 DPR-S-WRDPTLPEVISMLM--SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRN 301 (717)
T ss_pred CCc-c-ccccccHHHHHHHh--ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHh
Confidence 444 5 56677888877665 44443 121 22378999999999999999999999999999
Q ss_pred hcccccccCC------CchHHHHHHHHH---hcChHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccCh-hHHHH
Q 045086 130 LTDEDVLEDN------DEPARVLVDALI---ENNVLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKP-SVAEL 199 (522)
Q Consensus 130 LtD~d~~~e~------~e~~~~Lv~aL~---~~~~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p-~~a~~ 199 (522)
|.......++ ..+.-.++..|- +..+-+.+.-+|+.|.+. +.--...+++.|.++=+-+= .| +-
T Consensus 302 Lvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI-~P~Sg--- 375 (717)
T KOG1048|consen 302 LVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVI-IPHSG--- 375 (717)
T ss_pred hhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhc-ccccc---
Confidence 9888655332 123334444443 334445555555555444 33233344444433322110 11 00
Q ss_pred HhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhch-HHHHHHHHhhcc-cCCCCCCcHHHHHHhH
Q 045086 200 VCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNG-VDVLLQAVAMYK-SKDPKTSDEEEMLENL 277 (522)
Q Consensus 200 ~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dG-iD~LL~~la~Yr-krDP~~~eE~E~mENl 277 (522)
..+..+ + +++...++-.| ++-+|-=+.-.+.+.|+++.+.+| ||.|+-.+-... +.++.+ .-+||+
T Consensus 376 -w~~~~~-~---~~~~~~~vf~n---~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~----K~VENc 443 (717)
T KOG1048|consen 376 -WEEEPA-P---RKAEDSTVFRN---VTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDS----KSVENC 443 (717)
T ss_pred -cCCCCc-c---cccccceeeeh---hhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccc----hhHHHH
Confidence 000000 0 22222222233 334455555557789999999876 999998665332 222221 234454
Q ss_pred HHHHHHhhCChhh--------------------------------H-HH----------------------HHHhhhHHH
Q 045086 278 FDSLCCVLMPLEN--------------------------------K-ER----------------------FVKAEGVEL 302 (522)
Q Consensus 278 Fd~Lcs~L~~~~n--------------------------------k-~~----------------------Fl~~EGveL 302 (522)
.-.|=. |-.+-. | .+ ...-+=|.+
T Consensus 444 vCilRN-LSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~ 522 (717)
T KOG1048|consen 444 VCILRN-LSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRP 522 (717)
T ss_pred HHHHhh-cCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHH
Confidence 322211 111000 0 00 112223444
Q ss_pred HHHHHhcchh-----hhhhhHHHHHHHhcCC--cchhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHH
Q 045086 303 MIIIMKQKKS-----AYASAIRALDFAMTKY--PPACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLI 375 (522)
Q Consensus 303 M~lmlkekk~-----sr~~AlKvLD~Al~~~--~~~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIi 375 (522)
.+.+|.+.+- +.-+||--|-.+..-. --.|..|..--||..||.++= -...+|+.=.
T Consensus 523 Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~----------------~~~~~vv~s~ 586 (717)
T KOG1048|consen 523 YLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLR----------------NDDSDVVRSA 586 (717)
T ss_pred HHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHh----------------cCCchHHHHH
Confidence 4555653321 2233333333221111 236666788889999988872 2357899999
Q ss_pred HHHhccCCCcchHHHHHHHhh
Q 045086 376 ASLFGGILRGSRRERLLSKFI 396 (522)
Q Consensus 376 aSLlr~l~~~s~r~RlLaKFv 396 (522)
++++||+..+-.-..++.|.+
T Consensus 587 a~~LrNls~d~rnk~ligk~a 607 (717)
T KOG1048|consen 587 AGALRNLSRDIRNKELIGKYA 607 (717)
T ss_pred HHHHhhhccCchhhhhhhcch
Confidence 999999987666667777764
No 19
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=92.55 E-value=0.083 Score=38.38 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=34.3
Q ss_pred CCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcc
Q 045086 93 PELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTD 132 (522)
Q Consensus 93 P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD 132 (522)
|+.-..+++.|+++.|+.||.|+|.++...++-.|..|++
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3444678899999999999999999999999988887763
No 20
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.46 E-value=1.8 Score=46.20 Aligned_cols=108 Identities=16% Similarity=0.238 Sum_probs=88.1
Q ss_pred HHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcch-hhhhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhh
Q 045086 270 EEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQKK-SAYASAIRALDFAMTKYPPACERFVDVLGLKTAFAAF 348 (522)
Q Consensus 270 E~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkekk-~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~F 348 (522)
..|-.+-.||-|-..+-.-+|=..|....|..+.+..+...- .-|..|..|+--|..+.|..=+.+.+.+||++|+.+|
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 445556778888888888888899999999999999888764 6799999999999999998999999999999999999
Q ss_pred hcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcchH
Q 045086 349 MGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSRR 388 (522)
Q Consensus 349 M~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r 388 (522)
-+..+ ...---++.=|+||+||-+.|..+
T Consensus 176 s~~~~-----------~~~r~kaL~AissLIRn~~~g~~~ 204 (342)
T KOG2160|consen 176 SSDDP-----------NTVRTKALFAISSLIRNNKPGQDE 204 (342)
T ss_pred ccCCC-----------chHHHHHHHHHHHHHhcCcHHHHH
Confidence 74321 112245788899999998877763
No 21
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.26 E-value=1.5 Score=41.10 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=81.5
Q ss_pred hchHHHHHhhccccCCChhhhhHHHH--HHHHhcCCh-HHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHH
Q 045086 204 TKLLRWLLGKIKVREFDSNKQYASEI--LAILLQNST-ANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDS 280 (522)
Q Consensus 204 t~ll~wLL~Ri~~k~~d~Nk~YAsEi--LaILLQ~s~-~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~ 280 (522)
..-..|+.++++....+. ..+ |.+.|.+++ ..-..|.+.+|++.|+.+++.+-++.....+..+....+.-|
T Consensus 65 ~~~p~~~i~~L~~~~~~~-----~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~C 139 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPSTS-----KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRC 139 (187)
T ss_dssp CHHHHHHHHHHTTT--HH-----HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCccH-----HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHH
Confidence 346788888888766554 222 566666554 455678789999999999999888777777778888889999
Q ss_pred HHHhhCChhhHHHHHH-hhhHHHHHHHHhcc-hhhhhhhHHHHHHH
Q 045086 281 LCCVLMPLENKERFVK-AEGVELMIIIMKQK-KSAYASAIRALDFA 324 (522)
Q Consensus 281 Lcs~L~~~~nk~~Fl~-~EGveLM~lmlkek-k~sr~~AlKvLD~A 324 (522)
+=+++..+.|...++. ..+|......|-.. -..|..|+.+|.+.
T Consensus 140 lkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 140 LKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 9888999988877766 55666665555443 35677777777653
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.89 E-value=36 Score=37.80 Aligned_cols=188 Identities=14% Similarity=0.176 Sum_probs=120.2
Q ss_pred ChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhhcCCCCChh
Q 045086 95 LYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRLSDADSDPD 174 (522)
Q Consensus 95 LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~~e~ 174 (522)
.+|.-+.-+..+.|...|.|+|..|-.-++..|.-+.... ...+..+.+++++.+++..|.-=|
T Consensus 69 ~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~---------~~~~~~~~~~~l~~~i~~~L~~~d------- 132 (503)
T PF10508_consen 69 LSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS---------EGAAQLLVDNELLPLIIQCLRDPD------- 132 (503)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---------HHHHHHhcCccHHHHHHHHHcCCc-------
Confidence 4555556667788899999999999988888766654322 124566677888888887763222
Q ss_pred HHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHH
Q 045086 175 EMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLL 254 (522)
Q Consensus 175 e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL 254 (522)
..--..+..++.++....+.+. .+. ..+++.-|-+-+.. .-+..|.=+-|+++-+...|++......+.+-++.++
T Consensus 133 -~~Va~~A~~~L~~l~~~~~~~~-~l~-~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll 208 (503)
T PF10508_consen 133 -LSVAKAAIKALKKLASHPEGLE-QLF-DSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLL 208 (503)
T ss_pred -HHHHHHHHHHHHHHhCCchhHH-HHh-CcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHH
Confidence 2223346677778877544443 343 22334434333332 2344555566788888888888887777666677777
Q ss_pred HHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcch
Q 045086 255 QAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQKK 311 (522)
Q Consensus 255 ~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkekk 311 (522)
.-+. ..|+ =.=-|+.++|+.+...+.|-....+.-.++.+.-++...+
T Consensus 209 ~eL~---~dDi------Lvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~ 256 (503)
T PF10508_consen 209 KELD---SDDI------LVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE 256 (503)
T ss_pred HHhc---CccH------HHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc
Confidence 6552 2222 1233999999999988888655555556777777776554
No 23
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=89.55 E-value=2.2 Score=42.79 Aligned_cols=136 Identities=22% Similarity=0.212 Sum_probs=76.6
Q ss_pred HhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcchHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045086 336 VDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSRRERLLSKFIENECEKIDRLMELYMRYSD 415 (522)
Q Consensus 336 Ve~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r~RlLaKFvE~d~EKvdRL~eL~~~Y~~ 415 (522)
|=++|+-|.|.-||.--+ -+||.-+|+.+||..+..+..+.|--++=.+... |--
T Consensus 51 lfAlGlvt~fd~fm~GY~-------------Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a-~~~----------- 105 (214)
T TIGR03060 51 LFALGLVTVFDRFMEGYR-------------PEEHLDALFDALCNSNGFDPEQLREDAKQLLEQA-KGK----------- 105 (214)
T ss_pred hHHhhHHHHHHHHHcCCC-------------ChHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcC-----------
Confidence 347899999999996421 2689999999999998655557776555433211 100
Q ss_pred HHHHHHHHhhhcccCchhh-------hHHHH-HHHhhhhhhhHH-HHHHHHHHHHhhcCChhHHHHHHHHHHhcCCChhH
Q 045086 416 RVRAETDRLNELELDDLEM-------DEEEK-YNRKLESGLYTL-QLIAVILGHLWCSEQPQMRTRIELLLKQQKLTKKD 486 (522)
Q Consensus 416 rv~~~~~~~~~~~~~~~e~-------~e~e~-yl~rLdaGLftL-Q~id~Ila~l~~~~~~~~~~~i~~lL~~~~~~~~~ 486 (522)
-+.....-+......+.+. ....+ |.|=+-=|||+| +..+--+ ..+.......+..+-..-|.+..-
T Consensus 106 s~~~i~~~l~~~~~~~~~~l~l~~ia~n~~f~YSRl~AIGL~~LLe~a~~~~----~~d~~~~~~~l~~l~~~L~ls~~k 181 (214)
T TIGR03060 106 GLDEILSWLTQANLSNGGGDTLQGIAGRHKFKYSRLFAIGLYSLLEEAAPDK----DIDEEDLNEILKELSEALGLSYDR 181 (214)
T ss_pred CHHHHHHHHhccccCCcchhHHHHHhcCCCcchHHHHHHHHHHHHHhcCccc----ccCHHHHHHHHHHHHHHcCCCHHH
Confidence 0011111111111000000 11233 555555599983 4333211 012233455666666777888888
Q ss_pred HHHHHHHHHhhcCC
Q 045086 487 VKDILQEYHDNIGD 500 (522)
Q Consensus 487 I~~~l~ey~~~lgd 500 (522)
+..-|.=|+.|+.-
T Consensus 182 v~KDL~lYrsnLeK 195 (214)
T TIGR03060 182 VEKDLDLYKSNLEK 195 (214)
T ss_pred HHhhHHHHHhHHHH
Confidence 99999999988753
No 24
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.51 E-value=10 Score=44.81 Aligned_cols=217 Identities=17% Similarity=0.249 Sum_probs=120.5
Q ss_pred hhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcch------hhhhhh
Q 045086 244 LGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQKK------SAYASA 317 (522)
Q Consensus 244 ~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkekk------~sr~~A 317 (522)
+.+.+|+++||+.|+.-+ |..+ ..+.+..+...|-.|...+.||.+.++.-||..|+..++.-- ..-..|
T Consensus 113 ~~~~gGL~~ll~~l~~~~--~~~~--~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIR--DFSR--GRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred hhcCCCHHHHHHHHHhhc--cccC--cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 456799999999999887 4444 578889999999999999999999999999999988776211 112233
Q ss_pred ---HHHHHHHhcC----CcchhhhHHhhhc----hhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcc
Q 045086 318 ---IRALDFAMTK----YPPACERFVDVLG----LKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGS 386 (522)
Q Consensus 318 ---lKvLD~Al~~----~~~~C~~fVe~~G----LktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s 386 (522)
|.++...++. ....-..|....| -+.-+.+|+.++..+-. ........++..||..
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~----r~~~~i~~~l~RiLP~--------- 255 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFV----RSNPQILQALARILPF--------- 255 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccc----cCCHHHHHHHHHHhhH---------
Confidence 5555555542 1122223333433 34445555554321100 0111223333333333
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCchhhhHHHHHHHhhhhhhhHHHHHHHHHHHHhhcCC
Q 045086 387 RRERLLSKFIENECEKIDRLMELYMRYSDRVRAETDRLNELELDDLEMDEEEKYNRKLESGLYTLQLIAVILGHLWCSEQ 466 (522)
Q Consensus 387 ~r~RlLaKFvE~d~EKvdRL~eL~~~Y~~rv~~~~~~~~~~~~~~~e~~e~e~yl~rLdaGLftLQ~id~Ila~l~~~~~ 466 (522)
++=.+-+|.+-|++-+..|-+ ....+.. . -.++ -|.|...+-|..-+ ..
T Consensus 256 --------Lt~G~~e~m~~Lv~~F~p~l~-f~~~D~~-------~--~~~~----------~~~Le~F~~i~~~I---~~ 304 (802)
T PF13764_consen 256 --------LTYGNEEKMDALVEHFKPYLD-FDKFDEE-------H--SPDE----------QFKLECFCEIAEGI---PN 304 (802)
T ss_pred --------HhcCCHHHHHHHHHHHHHhcC-hhhcccc-------c--CchH----------HHHHHHHHHHHhcC---CC
Confidence 333455566666666666652 2221110 0 0111 22233333333322 23
Q ss_pred hhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcCCCCChHHHHH
Q 045086 467 PQMRTRIELLLKQQKLTKKDVKDILQEYHDNIGDLDGPEEKER 509 (522)
Q Consensus 467 ~~~~~~i~~lL~~~~~~~~~I~~~l~ey~~~lgd~~~~e~~~~ 509 (522)
+..-.++...+-.+|+. +...+-|.+++-+.++.+++||++-
T Consensus 305 ~~~G~~LK~~Il~~GIv-~~a~~YL~~~~P~~~~~~s~eWk~~ 346 (802)
T PF13764_consen 305 NSNGNRLKDKILESGIV-QDAIDYLLKHFPSLKNTDSPEWKEF 346 (802)
T ss_pred CCchHHHHHHHHHhhHH-HHHHHHHHHhCcccccCCCHHHHHH
Confidence 34456666666677764 4444455555556666678888876
No 25
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.06 E-value=25 Score=39.73 Aligned_cols=259 Identities=15% Similarity=0.183 Sum_probs=157.5
Q ss_pred HhHHHHhcCCCCCccccccHhhHHHHHHhhhccccCCCChHHHHhcCChHHHHHhhc-CCCchHHHHHHHHhhhhccccc
Q 045086 57 ENIEARLKYPDQPEKFADTEVDLHEELEKLKVLAGGPELYPDVVNLNVIPSILGLLS-HDNTDIAIDVVHLLQDLTDEDV 135 (522)
Q Consensus 57 kNqe~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLs-HeNtDIai~vi~lL~ELtD~d~ 135 (522)
-+...+.-|.|+|+. ...-...++++..--.+|..=...+. |+|+.||..|. ++|..+-..+.-.|. ..-.
T Consensus 68 ~~~~~~~~~S~~~~~----q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLT---nIAs 139 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQ----QLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALT---NIAS 139 (514)
T ss_pred hHHHHHHHhCCCHHH----HHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHH---HHhc
Confidence 566677788888876 55555566666666666777666666 99999999997 556777443333322 2211
Q ss_pred ccCCCchHHHHHHHHHhcChHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhcc
Q 045086 136 LEDNDEPARVLVDALIENNVLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIK 215 (522)
Q Consensus 136 ~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~ 215 (522)
. ...-..+.++++.+.++++-|.-=++. ..+ ++ .-.+-|++- +...+...+-+.+.++=||.-+.
T Consensus 140 g------tse~T~~vv~agavp~fi~Ll~s~~~~--v~e--Qa----vWALgNIag-ds~~~Rd~vl~~g~l~pLl~~l~ 204 (514)
T KOG0166|consen 140 G------TSEQTKVVVDAGAVPIFIQLLSSPSAD--VRE--QA----VWALGNIAG-DSPDCRDYVLSCGALDPLLRLLN 204 (514)
T ss_pred C------chhhccccccCCchHHHHHHhcCCcHH--HHH--HH----HHHHhcccc-CChHHHHHHHhhcchHHHHHHhc
Confidence 1 112335556667777777665433222 111 22 234556665 55555666667778888887777
Q ss_pred ccC---CChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhH-
Q 045086 216 VRE---FDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENK- 291 (522)
Q Consensus 216 ~k~---~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk- 291 (522)
... +-.|-.|+ |+-|.-+.. --...+-|..+|.+|+.--+ + ..+|-+.+.-=+++++.+.+.-+
T Consensus 205 ~~~~~~~lRn~tW~---LsNlcrgk~----P~P~~~~v~~iLp~L~~ll~----~-~D~~Vl~Da~WAlsyLsdg~ne~i 272 (514)
T KOG0166|consen 205 KSDKLSMLRNATWT---LSNLCRGKN----PSPPFDVVAPILPALLRLLH----S-TDEEVLTDACWALSYLTDGSNEKI 272 (514)
T ss_pred cccchHHHHHHHHH---HHHHHcCCC----CCCcHHHHHHHHHHHHHHHh----c-CCHHHHHHHHHHHHHHhcCChHHH
Confidence 653 33344444 333322221 00112334444444433322 1 12345567778888888766555
Q ss_pred HHHHHhhhHHHHHHHHhcch-hhhhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhhhc
Q 045086 292 ERFVKAEGVELMIIIMKQKK-SAYASAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMG 350 (522)
Q Consensus 292 ~~Fl~~EGveLM~lmlkekk-~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~FM~ 350 (522)
+..+++.++-..+-+|.... ....+|||.+=.-.+|...-=+-.++.++|..+-++++.
T Consensus 273 q~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~ 332 (514)
T KOG0166|consen 273 QMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS 332 (514)
T ss_pred HHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc
Confidence 56888888888888887655 577899999888667766666778888888887777764
No 26
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=88.23 E-value=0.75 Score=32.22 Aligned_cols=38 Identities=21% Similarity=0.430 Sum_probs=32.8
Q ss_pred CChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhc
Q 045086 94 ELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLT 131 (522)
Q Consensus 94 ~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELt 131 (522)
+....+++.|+++.|+.||.+++.+|...++..|.-|+
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 34556789999999999999999999999998887664
No 27
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=87.48 E-value=6 Score=45.39 Aligned_cols=77 Identities=17% Similarity=0.375 Sum_probs=65.3
Q ss_pred HhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCC-hhhHHHHHHhhhHHHHHHHHhcch-hhhhhhHHH
Q 045086 243 RLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMP-LENKERFVKAEGVELMIIIMKQKK-SAYASAIRA 320 (522)
Q Consensus 243 ~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~-~~nk~~Fl~~EGveLM~lmlkekk-~sr~~AlKv 320 (522)
.+...||++-|+|.+ .||++- .|--+-.++|.++|+ .+-|.+|+..-||+-..-|+...- .+|..++.|
T Consensus 414 g~~~~dv~~plvqll-----~dp~~~----i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~ 484 (678)
T KOG1293|consen 414 GLKRNDVAQPLVQLL-----MDPEIM----IMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWV 484 (678)
T ss_pred CCccchhHHHHHHHh-----hCcchh----HHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence 345678999999999 889764 455778899999984 668999999999999999999885 679999999
Q ss_pred HHHHhcCC
Q 045086 321 LDFAMTKY 328 (522)
Q Consensus 321 LD~Al~~~ 328 (522)
|=|.+-++
T Consensus 485 Lr~l~f~~ 492 (678)
T KOG1293|consen 485 LRHLMFNC 492 (678)
T ss_pred HHHHHhcc
Confidence 99999854
No 28
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=87.30 E-value=9.8 Score=38.30 Aligned_cols=138 Identities=24% Similarity=0.290 Sum_probs=80.0
Q ss_pred HhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcchHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045086 336 VDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSRRERLLSKFIENECEKIDRLMELYMRYSD 415 (522)
Q Consensus 336 Ve~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r~RlLaKFvE~d~EKvdRL~eL~~~Y~~ 415 (522)
|=++|+-|+|--||.--+ -++|.-+|+.+||..+..+..+.|=-++=++.- .|---..++..-...
T Consensus 46 lfalG~vt~fd~fm~GY~-------------p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~-a~~~s~~~l~~~l~~ 111 (216)
T PF11264_consen 46 LFALGLVTVFDRFMQGYP-------------PEEDKDSIFNALCQALGFDPEQYRQDAEKLEEW-AKGKSIEDLLSWLSQ 111 (216)
T ss_pred hHHhhHHHHHHHHhcCCC-------------ChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHhc
Confidence 347899999999996522 268999999999999965555666544433311 111111111111110
Q ss_pred -------HHHHHHHHhhhcccCchhhhHHHH-HHHhhhhhhhH-HHHHHHHHHHHhhcCChhHHHHHHHHHHhcCCChhH
Q 045086 416 -------RVRAETDRLNELELDDLEMDEEEK-YNRKLESGLYT-LQLIAVILGHLWCSEQPQMRTRIELLLKQQKLTKKD 486 (522)
Q Consensus 416 -------rv~~~~~~~~~~~~~~~e~~e~e~-yl~rLdaGLft-LQ~id~Ila~l~~~~~~~~~~~i~~lL~~~~~~~~~ 486 (522)
.+.+.-..+.. ...+ |.|=+-=|||+ |+.++.-+ ..+.+.....+..+-..-|.+..-
T Consensus 112 ~~~~~~~~l~~~~~~ia~---------~~~f~YSRl~AIGL~~LLe~a~~~~----~~~~~~~~~~l~~l~~~l~ls~~k 178 (216)
T PF11264_consen 112 KGGEGDNPLAAILQAIAS---------NPKFKYSRLFAIGLFRLLELAGADL----VKDEEKRPEALEKLSEALGLSKEK 178 (216)
T ss_pred cccccchHHHHHHHHHhc---------CCCCchHHHHHHHHHHHHHhcCccc----ccChhhHHHHHHHHHHHcCCCHHH
Confidence 01111111100 1233 55445559999 45555411 134456667777777788888899
Q ss_pred HHHHHHHHHhhcCC
Q 045086 487 VKDILQEYHDNIGD 500 (522)
Q Consensus 487 I~~~l~ey~~~lgd 500 (522)
+..-|.-|.+|++-
T Consensus 179 v~kDL~lYrsnLeK 192 (216)
T PF11264_consen 179 VEKDLDLYRSNLEK 192 (216)
T ss_pred HHhhHHHHHhHHHH
Confidence 99999999988854
No 29
>PRK13266 Thf1-like protein; Reviewed
Probab=86.40 E-value=10 Score=38.42 Aligned_cols=141 Identities=21% Similarity=0.253 Sum_probs=74.7
Q ss_pred HhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcchHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045086 336 VDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSRRERLLSKFIENECEKIDRLMELYMRYSD 415 (522)
Q Consensus 336 Ve~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r~RlLaKFvE~d~EKvdRL~eL~~~Y~~ 415 (522)
|=++||-|.|.-||.--+ -+||.-+|+.+||..+..+....|--++=.+.-. |---.-++..--..
T Consensus 51 lfAlGlvt~fd~fm~GY~-------------Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a-~~~s~~~i~~~l~~ 116 (225)
T PRK13266 51 LFALGLVTVFDRFMQGYR-------------PEEHKDSIFNALCQAVGFDPEQLRQDAERLLELA-KGKSLKEILSWLTQ 116 (225)
T ss_pred hHHhhHHHHHHHHHcCCC-------------ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcCCHHHHHHHHhc
Confidence 347899999999996421 2689999999999998655557776555433211 11111111111000
Q ss_pred HH----HHHHHHhhhcccCchhhhHHHH-HHHhhhhhhhH-HHHHHHHHHHHhhcCChhHHHHHHHHHHhcCCChhHHHH
Q 045086 416 RV----RAETDRLNELELDDLEMDEEEK-YNRKLESGLYT-LQLIAVILGHLWCSEQPQMRTRIELLLKQQKLTKKDVKD 489 (522)
Q Consensus 416 rv----~~~~~~~~~~~~~~~e~~e~e~-yl~rLdaGLft-LQ~id~Ila~l~~~~~~~~~~~i~~lL~~~~~~~~~I~~ 489 (522)
.- ....+.+.... ....+ |.|=+-=|||+ |+.++--+ ..+.......+..+-..-|.+..-+..
T Consensus 117 ~~~~~~~~l~~~l~~ia------~~~~f~YSRl~AIGL~~LLe~a~~~~----~~d~~~~~~~l~~l~~~L~ls~~kv~K 186 (225)
T PRK13266 117 KALGEPGGLLATLLAIA------NNSKFKYSRLFAIGLYTLLEEAQPDL----VKDEEKLNEALKDISEGLGLSKEKVEK 186 (225)
T ss_pred cccccchhHHHHHHHHh------cCCCCchHHHHHHHHHHHHHhcCccc----ccCHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 00 00000000000 01233 55545559999 45444311 122234455555666666777777777
Q ss_pred HHHHHHhhcCC
Q 045086 490 ILQEYHDNIGD 500 (522)
Q Consensus 490 ~l~ey~~~lgd 500 (522)
-|.=|+.|+.-
T Consensus 187 DL~lYrsnLeK 197 (225)
T PRK13266 187 DLDLYRSNLEK 197 (225)
T ss_pred hHHHHHhHHHH
Confidence 78888877753
No 30
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.12 E-value=4 Score=40.54 Aligned_cols=79 Identities=20% Similarity=0.346 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhccCCCcchHHHHHHHhhhhhh-HHHHHHHHHHHH----HHHHHHHHHHHhhhcccCchhhhHHHHHH
Q 045086 367 LEERLVSLIASLFGGILRGSRRERLLSKFIENEC-EKIDRLMELYMR----YSDRVRAETDRLNELELDDLEMDEEEKYN 441 (522)
Q Consensus 367 ~eEhvisIiaSLlr~l~~~s~r~RlLaKFvE~d~-EKvdRL~eL~~~----Y~~rv~~~~~~~~~~~~~~~e~~e~e~yl 441 (522)
.=||||..|.+| =..-||||+|| +|+|-|+++|.. |..-+.-..+.- .....+. .....=+
T Consensus 39 a~e~v~~~f~~l-----------G~iF~Fve~Dv~aKid~L~~l~ssd~et~rtild~~~e~~-~~~~~G~--~Sgtr~L 104 (209)
T KOG4189|consen 39 AYEEVCKFFGCL-----------GTIFSFVEKDVRAKIDDLVELRSSDPETYRTILDLDTEES-EVGTIGN--QSGTRNL 104 (209)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHh-HhcccCc--cccchHH
Confidence 346777777666 35789999998 899999999988 666665322111 1111110 0223357
Q ss_pred Hhhhhhh-hHHHHHHHHHH
Q 045086 442 RKLESGL-YTLQLIAVILG 459 (522)
Q Consensus 442 ~rLdaGL-ftLQ~id~Ila 459 (522)
.||..|| |.....+-|+|
T Consensus 105 lrl~R~LefV~efl~~i~a 123 (209)
T KOG4189|consen 105 LRLNRALEFVIEFLDQIFA 123 (209)
T ss_pred HHHHhhHHHHHHHHHHHHc
Confidence 7777776 56777777665
No 31
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=84.15 E-value=39 Score=40.16 Aligned_cols=282 Identities=21% Similarity=0.248 Sum_probs=155.9
Q ss_pred HHHhcCChHHHHHhhcCCCch------HHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhhcCCCC
Q 045086 98 DVVNLNVIPSILGLLSHDNTD------IAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRLSDADS 171 (522)
Q Consensus 98 ~~v~l~~v~sL~~LLsHeNtD------Iai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~ 171 (522)
.+.+.|++..++.+|.+-. | -+..++.||.=-.-.- ..- .+|++-+.+..|...|.+.=..+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~-~~~~~~~ll~~llkLL~~c~Kv~------~NR----~~Ll~~~al~~LL~~L~~~l~~~~ 180 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIR-DFSRGRELLQVLLKLLRYCCKVK------VNR----RALLELNALNRLLSVLNRALQANQ 180 (802)
T ss_pred HhhcCCCHHHHHHHHHhhc-cccCcHHHHHHHHHHHHHHHhhH------HHH----HHHHHcCCHHHHHHHHHHHHhCcc
Confidence 3456799999999997754 3 2233334433222221 122 455556888888888866533311
Q ss_pred ChhHHHHHHHHHHHHHhhhccChh--HHH-----HHh----hhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHH
Q 045086 172 DPDEMAAVYNTLATIENLIEVKPS--VAE-----LVC----ERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTAN 240 (522)
Q Consensus 172 ~e~e~~gV~~~L~iiENl~e~~p~--~a~-----~~~----~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~n 240 (522)
++.-..=+...|.|+|-+++--.+ ... ... +...-+.|||+|+.......|.+-..=+..|| -
T Consensus 181 ~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiL------P 254 (802)
T PF13764_consen 181 NSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARIL------P 254 (802)
T ss_pred ccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHh------h
Confidence 223344555677888887762111 100 011 13446999999999665555544433333333 2
Q ss_pred HHHhhhhchHHHHHHHHhhc---ccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcchhhhhhh
Q 045086 241 QKRLGQMNGVDVLLQAVAMY---KSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQKKSAYASA 317 (522)
Q Consensus 241 r~~~~~~dGiD~LL~~la~Y---rkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkekk~sr~~A 317 (522)
.-.+|..+-|+.|.....+| -+-|....++..++-|+|=.++..+-... -|-.|=-.++ .++..
T Consensus 255 ~Lt~G~~e~m~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~--------~G~~LK~~Il-----~~GIv 321 (802)
T PF13764_consen 255 FLTYGNEEKMDALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNS--------NGNRLKDKIL-----ESGIV 321 (802)
T ss_pred HHhcCCHHHHHHHHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCC--------chHHHHHHHH-----HhhHH
Confidence 33567777888888876666 44555555666677666666665553322 2333333333 33333
Q ss_pred HHHHHHHhcCCc-------chhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCC----cc
Q 045086 318 IRALDFAMTKYP-------PACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILR----GS 386 (522)
Q Consensus 318 lKvLD~Al~~~~-------~~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~----~s 386 (522)
=..++|-+...| +-=..|+..=+|++++.++.|=.. +...+|....+.++.++..|=. .++ |+
T Consensus 322 ~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~-----gh~~tQ~~~~~~~l~~lH~LEq-vss~~~IGs 395 (802)
T PF13764_consen 322 QDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLAR-----GHEPTQLLIAEQLLPLLHRLEQ-VSSEEHIGS 395 (802)
T ss_pred HHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHh-----cCHHHHHHHHhhHHHHHHHhhc-CCCccchHH
Confidence 345556554322 335679999999999999987521 2233555566777777766644 332 11
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 045086 387 RRERLLSKFIENECEKIDRLMELYMRYSDR 416 (522)
Q Consensus 387 ~r~RlLaKFvE~d~EKvdRL~eL~~~Y~~r 416 (522)
--.-+|.-+.|++- =-+++-++|++....
T Consensus 396 lAEnlLeal~~~~~-v~~~I~~lR~~Tr~e 424 (802)
T PF13764_consen 396 LAENLLEALAENED-VAKKIQNLRKETRQE 424 (802)
T ss_pred HHHHHHHHHhcChh-HHHHHHHHHHHHHHH
Confidence 13445555555432 123444556665443
No 32
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=82.62 E-value=33 Score=34.39 Aligned_cols=132 Identities=18% Similarity=0.235 Sum_probs=75.1
Q ss_pred HhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcchHHHHHHHhhhhhhHHHHHHHHHHHHHH-
Q 045086 336 VDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSRRERLLSKFIENECEKIDRLMELYMRYS- 414 (522)
Q Consensus 336 Ve~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r~RlLaKFvE~d~EKvdRL~eL~~~Y~- 414 (522)
|=++|+-|.|--||.--+ -+||.-+|+.+||..+..+..+.|--++=.+. +.|---.-++..--.
T Consensus 49 lfAlGlvt~fd~fm~GY~-------------Pee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~-~a~~~s~~~l~~~l~~ 114 (206)
T PLN03060 49 IFALGFVTVYDQLMDGYP-------------NATDRDAIFKAYIEALGEDPDQYRKDAKKLEE-WASSQSASGIADFNSG 114 (206)
T ss_pred hHHhhHHHHHHHHHcCCC-------------ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHhcCCHHHHHHHHhc
Confidence 447899999999996421 26899999999999986555577766554442 112111111111111
Q ss_pred -----HHHHHHHHHhhhcccCchhhhHHHH-HHHhhhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHhcCCChhHHH
Q 045086 415 -----DRVRAETDRLNELELDDLEMDEEEK-YNRKLESGLYTLQLIAVILGHLWCSEQPQMRTRIELLLKQQKLTKKDVK 488 (522)
Q Consensus 415 -----~rv~~~~~~~~~~~~~~~e~~e~e~-yl~rLdaGLftLQ~id~Ila~l~~~~~~~~~~~i~~lL~~~~~~~~~I~ 488 (522)
..+.+.-+++. ....+ |.|=+-=|||+| | .....+++. .+..+-..-|.+..-+.
T Consensus 115 ~~~~~~~l~~~~~~~~---------~~~~f~YSRl~AIGL~~L------L-e~a~~~d~~---~l~~l~~~L~ls~~kv~ 175 (206)
T PLN03060 115 DGEVEAVLKDIAERAA---------GKTKFHYSRFFAIGLFRL------L-ECAKASDPA---VLEKLSKALNVSKRSVD 175 (206)
T ss_pred ccccchHHHHHHHHhh---------cCCCcchHHHHHHHHHHH------H-HHcCCCCHH---HHHHHHHHcCCCHHHHH
Confidence 01111111110 01233 444444499984 2 222233443 55556667788888899
Q ss_pred HHHHHHHhhcCC
Q 045086 489 DILQEYHDNIGD 500 (522)
Q Consensus 489 ~~l~ey~~~lgd 500 (522)
.-|.-|+.|+.-
T Consensus 176 kDL~lYrsnLeK 187 (206)
T PLN03060 176 RDLDVYRNLLSK 187 (206)
T ss_pred hhHHHHHhHHHH
Confidence 999999988753
No 33
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.77 E-value=30 Score=37.57 Aligned_cols=160 Identities=23% Similarity=0.340 Sum_probs=110.7
Q ss_pred HhhhccccCCCChHHHHhcCChHHHHHhhc----CCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHH
Q 045086 84 EKLKVLAGGPELYPDVVNLNVIPSILGLLS----HDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELL 159 (522)
Q Consensus 84 k~l~~La~~P~LYp~~v~l~~v~sL~~LLs----HeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lL 159 (522)
-.|+.||-.-|+-...+++|++.+|+.+++ |.|--.+-.++.+|+-|--.|.. =++.|+.+..+.+
T Consensus 264 ~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv----------Ks~IV~~gg~~~i 333 (461)
T KOG4199|consen 264 TTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV----------KSTIVEKGGLDKI 333 (461)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch----------HHHHHHhcChHHH
Confidence 344556777788899999999999999996 45555778889999888776633 2567788888888
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChH
Q 045086 160 VQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTA 239 (522)
Q Consensus 160 v~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~ 239 (522)
++-+.|... +|.++...+ =+++||.--++.
T Consensus 334 i~l~~~h~~------------------------~p~Vi~~~~--------------------------a~i~~l~LR~pd 363 (461)
T KOG4199|consen 334 ITLALRHSD------------------------DPLVIQEVM--------------------------AIISILCLRSPD 363 (461)
T ss_pred HHHHHHcCC------------------------ChHHHHHHH--------------------------HHHHHHHhcCcc
Confidence 888888854 466655544 467888888888
Q ss_pred HHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhC-ChhhHHHHHHhhhHHHHHHHHhcch
Q 045086 240 NQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLM-PLENKERFVKAEGVELMIIIMKQKK 311 (522)
Q Consensus 240 nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~-~~~nk~~Fl~~EGveLM~lmlkekk 311 (522)
+-.++-+-+|-|..+|++- +-|.-..-+ -|.-..+=.++- ..+|+ .-+=+-|+|=.+++-|...
T Consensus 364 hsa~~ie~G~a~~avqAmk----ahP~~a~vQ---rnac~~IRNiv~rs~~~~-~~~l~~GiE~Li~~A~~~h 428 (461)
T KOG4199|consen 364 HSAKAIEAGAADLAVQAMK----AHPVAAQVQ---RNACNMIRNIVVRSAENR-TILLANGIEKLIRTAKANH 428 (461)
T ss_pred hHHHHHhcchHHHHHHHHH----hCcHHHHHH---HHHHHHHHHHHHhhhhcc-chHHhccHHHHHHHHHhcC
Confidence 8888888888999999884 445433222 233333333343 34444 3444678887777766543
No 34
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=80.31 E-value=55 Score=35.98 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=95.1
Q ss_pred cChhHHHHHhhhhchHHHHHhhcc--c-------cCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhccc
Q 045086 192 VKPSVAELVCERTKLLRWLLGKIK--V-------REFDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKS 262 (522)
Q Consensus 192 ~~p~~a~~~~~~t~ll~wLL~Ri~--~-------k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~Yrk 262 (522)
-+|..++.+..+. .+.-|++... . ..-..-..=|-=+||=++=+++..|..+.+.++.+.+...|..|+.
T Consensus 10 Rd~~~~~~l~~~~-~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~ 88 (446)
T PF10165_consen 10 RDPTGLDPLFTEE-GLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSD 88 (446)
T ss_pred cCcccchhhccHH-HHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccc
Confidence 3555555555433 3344555441 1 1122234445566787788899999999999999999999998876
Q ss_pred CCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcchhhhhhhHHHHHHHhcCCcchhhhHHhhhchh
Q 045086 263 KDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQKKSAYASAIRALDFAMTKYPPACERFVDVLGLK 342 (522)
Q Consensus 263 rDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkekk~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLk 342 (522)
+. ...+.+|+--=.--|++++....-+..+-+..|+++++--|...-......-+- -...++..=+.+-|+ ||
T Consensus 89 ~~--~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~---~~~~~~~~~~~l~Ei--LK 161 (446)
T PF10165_consen 89 SS--QPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQE---PTAPSPMDEEALSEI--LK 161 (446)
T ss_pred cC--CChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccc---cCCCCcchHHHHHHH--HH
Confidence 53 445666654433345555544444455555589998766554321000000000 000012233344444 78
Q ss_pred hHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHh
Q 045086 343 TAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLF 379 (522)
Q Consensus 343 tlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLl 379 (522)
.+|.+++....... ......-.|++.|+..++
T Consensus 162 llFNit~~~~~~~~-----~~~~~~~~~l~~il~~~l 193 (446)
T PF10165_consen 162 LLFNITLHYPKSVP-----EEFSPSIPHLVSILRRLL 193 (446)
T ss_pred HHHHhhhccCcccc-----hhhhHHHHHHHHHHHHHh
Confidence 88888776421100 133445566666666553
No 35
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.17 E-value=10 Score=41.34 Aligned_cols=162 Identities=22% Similarity=0.207 Sum_probs=107.1
Q ss_pred HHHHHHhcCChHHHHH------------------hhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChh
Q 045086 228 EILAILLQNSTANQKR------------------LGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLE 289 (522)
Q Consensus 228 EiLaILLQ~s~~nr~~------------------~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~ 289 (522)
|-.-+++|++.++.+. +.++.|.|.|+.+.. ++-.|+--|...|++++....+
T Consensus 88 epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmm---------td~vevqcnaVgCitnLaT~d~ 158 (550)
T KOG4224|consen 88 EPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMM---------TDGVEVQCNAVGCITNLATFDS 158 (550)
T ss_pred hHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhc---------CCCcEEEeeehhhhhhhhcccc
Confidence 4456778887766642 236789999988764 2334455589999999999999
Q ss_pred hHHHHHHhhhHHHHHHHHhcch-hhhhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHH
Q 045086 290 NKERFVKAEGVELMIIIMKQKK-SAYASAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELE 368 (522)
Q Consensus 290 nk~~Fl~~EGveLM~lmlkekk-~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~e 368 (522)
||.+.-..-|++-..++-|.|- .+++-|+-.|- +|+-..+|=..+|.++|++.|-++.--. .......-
T Consensus 159 nk~kiA~sGaL~pltrLakskdirvqrnatgaLl-nmThs~EnRr~LV~aG~lpvLVsll~s~---------d~dvqyyc 228 (550)
T KOG4224|consen 159 NKVKIARSGALEPLTRLAKSKDIRVQRNATGALL-NMTHSRENRRVLVHAGGLPVLVSLLKSG---------DLDVQYYC 228 (550)
T ss_pred chhhhhhccchhhhHhhcccchhhHHHHHHHHHH-HhhhhhhhhhhhhccCCchhhhhhhccC---------ChhHHHHH
Confidence 9999999999999999777764 45555555553 3344567888999999999999987321 11222334
Q ss_pred HHHHHHHHHHhccCCCcchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045086 369 ERLVSLIASLFGGILRGSRRERLLSKFIENECEKIDRLMELYMRYSDRVR 418 (522)
Q Consensus 369 EhvisIiaSLlr~l~~~s~r~RlLaKFvE~d~EKvdRL~eL~~~Y~~rv~ 418 (522)
-|.+|-|+- .+|.| .+.++-+--=+-.|+.|.+.-..||+
T Consensus 229 ttaisnIaV--------d~~~R--k~Laqaep~lv~~Lv~Lmd~~s~kvk 268 (550)
T KOG4224|consen 229 TTAISNIAV--------DRRAR--KILAQAEPKLVPALVDLMDDGSDKVK 268 (550)
T ss_pred HHHhhhhhh--------hHHHH--HHHHhcccchHHHHHHHHhCCChHHH
Confidence 454544431 11111 22344444456677888877777776
No 36
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=76.86 E-value=49 Score=33.88 Aligned_cols=98 Identities=18% Similarity=0.309 Sum_probs=60.4
Q ss_pred HHHHhcCChH-HHHHhhcCC--CchHHHHHHHHhhhhccc-ccc-cC---CCchH---HHH-------HHHHHhcChHHH
Q 045086 97 PDVVNLNVIP-SILGLLSHD--NTDIAIDVVHLLQDLTDE-DVL-ED---NDEPA---RVL-------VDALIENNVLEL 158 (522)
Q Consensus 97 p~~v~l~~v~-sL~~LLsHe--NtDIai~vi~lL~ELtD~-d~~-~e---~~e~~---~~L-------v~aL~~~~~~~l 158 (522)
-.+-+.+.|+ -|+-+|.|- +.+|+.+++.+|.-||=| +.. ++ ...+. ..+ =.|+.+.+++..
T Consensus 34 r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~ 113 (266)
T PF04821_consen 34 RQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKA 113 (266)
T ss_pred HHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 3334444444 455566433 699999999999999987 331 11 11111 112 245555677776
Q ss_pred HHHHhhhhcCC---CCChhHHHHHHHHHHHHHhhhccCh
Q 045086 159 LVQNIQRLSDA---DSDPDEMAAVYNTLATIENLIEVKP 194 (522)
Q Consensus 159 Lv~nL~RldE~---~~~e~e~~gV~~~L~iiENl~e~~p 194 (522)
++..+...=+. +-.++|..-|-.+|.+|=|++.+.+
T Consensus 114 ~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~ 152 (266)
T PF04821_consen 114 LIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPD 152 (266)
T ss_pred HHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 76666432111 1156788889999999999999844
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=76.13 E-value=39 Score=37.31 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhhhccChhHHHHHhhh----h-chHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHH
Q 045086 177 AAVYNTLATIENLIEVKPSVAELVCER----T-KLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGVD 251 (522)
Q Consensus 177 ~gV~~~L~iiENl~e~~p~~a~~~~~~----t-~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD 251 (522)
+-|-.+|.+|--|+.-+|+.+.-+... . ..-+|+ +-+. ++-+....-|+-+|+.|++.+..+.. + .-.+
T Consensus 69 d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~lL~-~~d~~i~~~a~~iLt~l~~~~~~~~~--~--~~l~ 142 (429)
T cd00256 69 DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NLLN-RQDQFIVHMSFSILAKLACFGLAKME--G--SDLD 142 (429)
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HHHc-CCchhHHHHHHHHHHHHHhcCccccc--h--hHHH
Confidence 457788999999999899888777653 1 223333 2333 23233455688999999986654321 1 1122
Q ss_pred HHHHHHh-hcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcc
Q 045086 252 VLLQAVA-MYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQK 310 (522)
Q Consensus 252 ~LL~~la-~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkek 310 (522)
.++..+. .++.-+ ......=.-.||..+|-.++.|..|.+..|+...+-+|+..
T Consensus 143 ~~~~~l~~~l~~~~-----~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~ 197 (429)
T cd00256 143 YYFNWLKEQLNNIT-----NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNA 197 (429)
T ss_pred HHHHHHHHHhhccC-----CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhc
Confidence 2333322 223222 23445556689999999999999999999999999999753
No 38
>PF05536 Neurochondrin: Neurochondrin
Probab=75.68 E-value=20 Score=40.46 Aligned_cols=73 Identities=14% Similarity=0.240 Sum_probs=63.2
Q ss_pred chHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcchhhhhhhHHHHHHHhcC
Q 045086 248 NGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQKKSAYASAIRALDFAMTK 327 (522)
Q Consensus 248 dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkekk~sr~~AlKvLD~Al~~ 327 (522)
+-|-.|+.+++. ++ ..+.+.-++.||+.+...|+|++.|++..||--+.-++..+-+..-.|+++|-+.++.
T Consensus 98 ~~IP~Lle~l~~-------~s-~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 98 SRIPLLLEILSS-------SS-DLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHHHc-------CC-chhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 557778887752 11 1899999999999999999999999999999999999988888899999999999985
Q ss_pred C
Q 045086 328 Y 328 (522)
Q Consensus 328 ~ 328 (522)
.
T Consensus 170 ~ 170 (543)
T PF05536_consen 170 L 170 (543)
T ss_pred c
Confidence 3
No 39
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=74.58 E-value=20 Score=38.63 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=67.8
Q ss_pred hchHHHHHhhccccC-CCh-hhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHH
Q 045086 204 TKLLRWLLGKIKVRE-FDS-NKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSL 281 (522)
Q Consensus 204 t~ll~wLL~Ri~~k~-~d~-Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~L 281 (522)
+.|+.=|-.-++... |.. .-.+|..+++-++.+.+.+-..+.+.+-++.+|..+. .+.=|.+.|=.=.+=|+|.++
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~--~~~i~~s~e~l~~lP~~l~Ai 182 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT--AKGILPSSEVLTSLPNVLSAI 182 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh--ccCCCCcHHHHHHHHHHHhHH
Confidence 334444445555544 655 4668899999999999999999998888999999886 233344554445566777777
Q ss_pred HHhhCChhhHHHHHHhhhHHHHHHHHhc
Q 045086 282 CCVLMPLENKERFVKAEGVELMIIIMKQ 309 (522)
Q Consensus 282 cs~L~~~~nk~~Fl~~EGveLM~lmlke 309 (522)
| +...+.++|.+..=++-...++-.
T Consensus 183 c---LN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 183 C---LNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred h---cCHHHHHHHHhcChHHHHHHHhCC
Confidence 7 556666666666555544444443
No 40
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=74.13 E-value=51 Score=36.93 Aligned_cols=282 Identities=17% Similarity=0.142 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCCCCCccccccHhhHHHHHHhhhccccCCCC---hHHHHhcCChHHHHHhhcCCCch
Q 045086 42 RTVKKLVLSFERRLKENIEARLKYPDQPEKFADTEVDLHEELEKLKVLAGGPEL---YPDVVNLNVIPSILGLLSHDNTD 118 (522)
Q Consensus 42 ~~lkklvl~fEk~i~kNqe~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~L---Yp~~v~l~~v~sL~~LLsHeNtD 118 (522)
+.+++-..+---.++||...|.+|-+= -+++| .|.-|..+-+.|+. -.-|-.+|-+ + -++|||-|
T Consensus 56 ~tv~~~qssC~A~~sk~ev~r~~F~~~---~I~a~-----~le~Lrq~psS~d~ev~~Q~~RaLgNi---C-ydn~E~R~ 123 (604)
T KOG4500|consen 56 DTVYLFQSSCLADRSKNEVERSLFRNY---CIDAE-----ALELLRQTPSSPDTEVHEQCFRALGNI---C-YDNNENRA 123 (604)
T ss_pred chhhhhhHHHHHHHhhhHHHHHHHHHH---hhHHH-----HHHHHHhCCCCCcccHHHHHHHHHhhh---h-ccCchhHH
Confidence 344444443344566888888765321 14433 34444455566642 1222233322 2 35899888
Q ss_pred HH------HHHHHHhhhhcccccccCCCchHHHH---------------HHHHHhcChHHHHHHHhhhhcCCCCChhHHH
Q 045086 119 IA------IDVVHLLQDLTDEDVLEDNDEPARVL---------------VDALIENNVLELLVQNIQRLSDADSDPDEMA 177 (522)
Q Consensus 119 Ia------i~vi~lL~ELtD~d~~~e~~e~~~~L---------------v~aL~~~~~~~lLv~nL~RldE~~~~e~e~~ 177 (522)
-. ..||++|.=.+-.|+.+. ++...+ -..+++.+++..|+-.++ + .-.-+.
T Consensus 124 a~~~lgGaqivid~L~~~cs~d~~an--e~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~-I-----~~qNaa 195 (604)
T KOG4500|consen 124 AFFNLGGAQIVIDVLKPYCSKDNPAN--EEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYW-I-----DWQNAA 195 (604)
T ss_pred HHHhcCCceehHhhhccccccCCccH--HHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhh-c-----ccccHH
Confidence 74 556788888887776543 222323 333333444443433221 1 212233
Q ss_pred HHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHH
Q 045086 178 AVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAV 257 (522)
Q Consensus 178 gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~l 257 (522)
--+.++.-+=||+++-.+....+|.++.+.--+++-+..-.=..-.-.+=|||+-..-|+ .-+-.+.+.+-++.++..+
T Consensus 196 ~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend-~Vkl~la~~gl~e~~~~lv 274 (604)
T KOG4500|consen 196 LTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEND-LVKLSLAQNGLLEDSIDLV 274 (604)
T ss_pred HHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCc-ceeeehhhcchHHHHHHHH
Confidence 345577778888888888777788888776666665554322223345567777665543 3344566545578888888
Q ss_pred hhcccCCCCCCcHHHHHHhHHHHHHHhh----C-ChhhHHHHHHhhhHHHHHHHHhcc--hhhhhhhHHHHHHHhcCCcc
Q 045086 258 AMYKSKDPKTSDEEEMLENLFDSLCCVL----M-PLENKERFVKAEGVELMIIIMKQK--KSAYASAIRALDFAMTKYPP 330 (522)
Q Consensus 258 a~YrkrDP~~~eE~E~mENlFd~Lcs~L----~-~~~nk~~Fl~~EGveLM~lmlkek--k~sr~~AlKvLD~Al~~~~~ 330 (522)
-.|+. .+ -.+-|-|+|-..|-+. . ....+..|-...=++-|.-.++.- ..--.++|-+=+|| ...+
T Consensus 275 ~~~k~----~t-~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfa--R~D~ 347 (604)
T KOG4500|consen 275 RNMKD----FT-KKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFA--RRDD 347 (604)
T ss_pred Hhccc----cc-chHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhh--ccch
Confidence 77753 11 1233557776666322 1 122333444444455555556554 23345566666666 3456
Q ss_pred hhhhHHhhhchhhHHHhhhcC
Q 045086 331 ACERFVDVLGLKTAFAAFMGK 351 (522)
Q Consensus 331 ~C~~fVe~~GLktlF~~FM~k 351 (522)
+|-.||+.+-+--|.+.+|+.
T Consensus 348 ~ci~~v~~~~~nkL~~~l~~~ 368 (604)
T KOG4500|consen 348 ICIQLVQKDFLNKLISCLMQE 368 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999983
No 41
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=69.63 E-value=1.7e+02 Score=33.08 Aligned_cols=242 Identities=19% Similarity=0.248 Sum_probs=137.6
Q ss_pred HHHHHHHHhHHHHhcCCCC---C----ccccc-cHhhHHHHHHh-hhcccc-CC-CChHHHHhcCChHHHHHhh-cCCCc
Q 045086 50 SFERRLKENIEARLKYPDQ---P----EKFAD-TEVDLHEELEK-LKVLAG-GP-ELYPDVVNLNVIPSILGLL-SHDNT 117 (522)
Q Consensus 50 ~fEk~i~kNqe~R~K~~dd---P----~KFmd-SE~dLd~~Ik~-l~~La~-~P-~LYp~~v~l~~v~sL~~LL-sHeNt 117 (522)
-+-..++.|.+.|.+-.|- | .=||+ +-++|++-+.. +-.|+. .. -+||.+...+.+--++.|| +--|.
T Consensus 159 ~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~ 238 (604)
T KOG4500|consen 159 VLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVRE 238 (604)
T ss_pred HHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhcc
Confidence 3445666777777765543 1 12333 33455544321 111111 11 2699999999999999999 77899
Q ss_pred hHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHH
Q 045086 118 DIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVA 197 (522)
Q Consensus 118 DIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a 197 (522)
||+--+.++|+-.-+-|..- =.|.++++++.++.-+....... ..+|.-..+.+.+=.-=++..-.+--
T Consensus 239 d~~eM~feila~~aend~Vk----------l~la~~gl~e~~~~lv~~~k~~t-~k~d~~~l~k~~~el~vllltGDeSM 307 (604)
T KOG4500|consen 239 DIDEMIFEILAKAAENDLVK----------LSLAQNGLLEDSIDLVRNMKDFT-KKTDMLNLFKRIAELDVLLLTGDESM 307 (604)
T ss_pred chhhHHHHHHHHHhcCccee----------eehhhcchHHHHHHHHHhccccc-chHHHHHHHHhhhhHhhhhhcCchHH
Confidence 99999999998887766431 13445566665444444332211 55666666665443333333222222
Q ss_pred HHHhhhhchHHHHHhhccccCCChhhhhHHHH-HHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHh
Q 045086 198 ELVCERTKLLRWLLGKIKVREFDSNKQYASEI-LAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLEN 276 (522)
Q Consensus 198 ~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEi-LaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mEN 276 (522)
..+-...+++++++.-+.. -|.|-+-+.-+ ++=+.- .+.+...+.+.+-++.|+..+++- +|-.+.- |...-
T Consensus 308 q~L~~~p~~l~~~~sw~~S--~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~--~~vdgnV--~~qhA 380 (604)
T KOG4500|consen 308 QKLHADPQFLDFLESWFRS--DDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQE--KDVDGNV--ERQHA 380 (604)
T ss_pred HHHhcCcHHHHHHHHHhcC--CchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHh--cCCCccc--hhHHH
Confidence 2244344477776666643 34444433222 333333 334445667778899999988753 3333332 23333
Q ss_pred HHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhc
Q 045086 277 LFDSLCCVLMPLENKERFVKAEGVELMIIIMKQ 309 (522)
Q Consensus 277 lFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlke 309 (522)
+..+|-.++....||..|..+-=+|-.+.|+|-
T Consensus 381 ~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~ 413 (604)
T KOG4500|consen 381 CLSALRNLMIPVSNKAHFAPAGVTEAILLQLKL 413 (604)
T ss_pred HHHHHHhccccCCchhhccccchHHHHHHHHHh
Confidence 444444445567899999999777777777764
No 42
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=68.78 E-value=1.1e+02 Score=32.31 Aligned_cols=136 Identities=19% Similarity=0.222 Sum_probs=71.9
Q ss_pred HhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcchHHHHHHHhhhhhhHHHHHHHHHHHHHH-
Q 045086 336 VDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSRRERLLSKFIENECEKIDRLMELYMRYS- 414 (522)
Q Consensus 336 Ve~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r~RlLaKFvE~d~EKvdRL~eL~~~Y~- 414 (522)
|=++||-|.|--||.--+ -+||.-+|+.+||..+..+....|--++=.+. +.|---.-++..--.
T Consensus 102 lFALGlVtvfd~fm~GY~-------------Pee~~~~IF~Alc~a~g~Dp~qyr~dA~~l~~-~A~~~s~~~l~~~l~~ 167 (283)
T PLN00047 102 VFALGFVTVYDQLMEGYP-------------SDEDRDAIFKAYIKALGEDPEQYRKDAAKLEE-WARSQTGSSLVDFSSK 167 (283)
T ss_pred hhhhhhHHHHHHHHccCC-------------ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHhcCCHHHHHHHHhc
Confidence 447899999999996422 26899999999999996555577765554442 112111111111100
Q ss_pred -HHHHHHHHHhhhcccCchhhhHHHH-HHHhhhhhhhHHHHHHHHHHHHhhcCChhHHHHHHHHHHhcCCChhHHHHHHH
Q 045086 415 -DRVRAETDRLNELELDDLEMDEEEK-YNRKLESGLYTLQLIAVILGHLWCSEQPQMRTRIELLLKQQKLTKKDVKDILQ 492 (522)
Q Consensus 415 -~rv~~~~~~~~~~~~~~~e~~e~e~-yl~rLdaGLftLQ~id~Ila~l~~~~~~~~~~~i~~lL~~~~~~~~~I~~~l~ 492 (522)
..+...-..|..... ..+.| |.|=+-=|||+| ......+++ ..+..+-..-|.+..-+..-|.
T Consensus 168 ~~~l~~~l~~IA~~a~-----~~~~f~YSRlfAIGLf~L-------Le~a~~~d~---~~l~~l~e~Lgls~~kv~KDLd 232 (283)
T PLN00047 168 EGEIEGILKDIAERAG-----SKGKFSYSRFFAIGLFRL-------LELANATEP---TALEKLCAALNINKRSVDRDLD 232 (283)
T ss_pred chHHHHHHHHHHHhhc-----cCCCcchHHHHHHHHHHH-------HHhcCCCCH---HHHHHHHHHcCCCHHHHHhhHH
Confidence 111111111100000 01223 444444499984 222222333 2445555566777777777777
Q ss_pred HHHhhcCC
Q 045086 493 EYHDNIGD 500 (522)
Q Consensus 493 ey~~~lgd 500 (522)
-|..||+.
T Consensus 233 lYrsnLeK 240 (283)
T PLN00047 233 VYRGLLSK 240 (283)
T ss_pred HHHhHHHH
Confidence 77777653
No 43
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=66.39 E-value=61 Score=33.15 Aligned_cols=142 Identities=23% Similarity=0.360 Sum_probs=90.0
Q ss_pred cccHhhHHHHHHhhhccccCCCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHh
Q 045086 73 ADTEVDLHEELEKLKVLAGGPELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIE 152 (522)
Q Consensus 73 mdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~ 152 (522)
.+|++-+ +.++.|.-|+..++ |..++ .++++-++.||++.|.-+-.-|+.+|.-|..-- +++..|+.
T Consensus 107 lns~~Q~-agLrlL~nLtv~~~-~~~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np----------~~~~~Ll~ 173 (254)
T PF04826_consen 107 LNSEVQL-AGLRLLTNLTVTND-YHHML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP----------DMTRELLS 173 (254)
T ss_pred CCCHHHH-HHHHHHHccCCCcc-hhhhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH----------HHHHHHHh
Confidence 4677774 57888888865544 55555 348999999999999999999999998886432 24566777
Q ss_pred cChHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhc-cChhHHHHH---hhhhchHHHHHhhccccCCChhhhhHHH
Q 045086 153 NNVLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIE-VKPSVAELV---CERTKLLRWLLGKIKVREFDSNKQYASE 228 (522)
Q Consensus 153 ~~~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e-~~p~~a~~~---~~~t~ll~wLL~Ri~~k~~d~Nk~YAsE 228 (522)
++++.-+++-+.+ ++..+-+.++|.+|||+-+ ++++..... .....|+ .+ |..-+.+|..
T Consensus 174 ~q~~~~~~~Lf~~-------~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~-~~--------~~e~~~~~~~ 237 (254)
T PF04826_consen 174 AQVLSSFLSLFNS-------SESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLF-SL--------FGESSQLAKK 237 (254)
T ss_pred ccchhHHHHHHcc-------CCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHH-HH--------HccHHHHHHH
Confidence 7877666544322 2334568889999999966 233211100 0011111 11 5556677777
Q ss_pred HHHHHhcCChHHHHH
Q 045086 229 ILAILLQNSTANQKR 243 (522)
Q Consensus 229 iLaILLQ~s~~nr~~ 243 (522)
+++..-+.+++-|.+
T Consensus 238 l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 238 LQALANHPDPEVKEQ 252 (254)
T ss_pred HHHHHcCCCHHHhhh
Confidence 777666666665543
No 44
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=64.33 E-value=31 Score=33.44 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=56.0
Q ss_pred HHHHhhhhchHHHHHHHHhh-cccC--------CCCCCcHHHHHHhHHHHHHHhh-CChhhHHHHHHhhhHHHHHHHHhc
Q 045086 240 NQKRLGQMNGVDVLLQAVAM-YKSK--------DPKTSDEEEMLENLFDSLCCVL-MPLENKERFVKAEGVELMIIIMKQ 309 (522)
Q Consensus 240 nr~~~~~~dGiD~LL~~la~-Yrkr--------DP~~~eE~E~mENlFd~Lcs~L-~~~~nk~~Fl~~EGveLM~lmlke 309 (522)
.+..+.+++.++.++..|.. |... +|.+..=.+.+..+|..|+... ..++|+..|.+.-+.. +..++..
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l-~~~~~~~ 113 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLDFL-ISIFMQL 113 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------HHCC
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH-HHHHHHh
Confidence 44567778888888887654 3333 2223333577888888888777 4788999888876644 3334444
Q ss_pred chhhhhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhc
Q 045086 310 KKSAYASAIRALDFAMTKYPPACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFG 380 (522)
Q Consensus 310 kk~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr 380 (522)
.-....++..+|...+.+++..|+++.+.. ++.++.+..+.++ ....+.++++++.
T Consensus 114 ~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll~~~gr--------------~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 114 QIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELLRKHGR--------------QPRYLDFLSSLCV 169 (207)
T ss_dssp CH-TTHHHHHHHHHHHTT-----------------------------------------------------
T ss_pred hccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHHHHcCC--------------ChHHHHHHhhhcc
Confidence 444556799999999999999999999887 8877776654221 1235667777766
No 45
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=60.72 E-value=1.1e+02 Score=29.61 Aligned_cols=127 Identities=13% Similarity=0.273 Sum_probs=75.9
Q ss_pred HHHHhcCChHHHHHhhcCCC------chHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhhcCCC
Q 045086 97 PDVVNLNVIPSILGLLSHDN------TDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRLSDAD 170 (522)
Q Consensus 97 p~~v~l~~v~sL~~LLsHeN------tDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~ 170 (522)
-+|++.|++..|+.++--.. -.+-.-++.-+.||-|-... .|+.+-++++.. +++.+. .
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~v-----sWd~l~~~FI~K-----ia~~Vn----~- 69 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIV-----SWDTLSDSFIKK-----IASYVN----S- 69 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcC-----chhhccHHHHHH-----HHHHHc----c-
Confidence 47999999999998883322 25555567777777765432 466665555543 333322 2
Q ss_pred CChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHH
Q 045086 171 SDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQ 241 (522)
Q Consensus 171 ~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr 241 (522)
..-|..=.--+|+|+||++.-.|.....+.+ .--++=|+.-++. .-.+-.+||-=++--|++..++.+
T Consensus 70 -~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~-evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA~~~~ 137 (160)
T PF11841_consen 70 -SAMDASILQRSLAILESIVLNSPKLYQLVEQ-EVTLESLIRHLQV-SNQEIQTNAIALINALFLKADDSK 137 (160)
T ss_pred -ccccchHHHHHHHHHHHHHhCCHHHHHHHhc-cCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcCChHH
Confidence 2235666678999999999866666555543 2234444555544 222234566666666666655544
No 46
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=60.48 E-value=49 Score=26.60 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=23.5
Q ss_pred hHHHHHhh-cCCCchHHHHHHHHhhhhccc
Q 045086 105 IPSILGLL-SHDNTDIAIDVVHLLQDLTDE 133 (522)
Q Consensus 105 v~sL~~LL-sHeNtDIai~vi~lL~ELtD~ 133 (522)
++.|+..| .|+|..+-..++..|.++-++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~ 30 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP 30 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Confidence 45678888 999999999999999966444
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=59.34 E-value=3.2e+02 Score=32.15 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=22.5
Q ss_pred HHhcCCcchhhhHHhhhchhhHHHhhh
Q 045086 323 FAMTKYPPACERFVDVLGLKTAFAAFM 349 (522)
Q Consensus 323 ~Al~~~~~~C~~fVe~~GLktlF~~FM 349 (522)
..+...+++|..|++.+|.+.+|..+-
T Consensus 497 ~~t~~~~~~C~~~l~~~g~~~~~~~l~ 523 (699)
T KOG3665|consen 497 NITDENPETCKEFLDNGGMKLLFKCLE 523 (699)
T ss_pred hhhcCCHHHHHHHHhcccHHHHHHHHh
Confidence 344457899999999999999998873
No 48
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=56.47 E-value=2.9e+02 Score=29.87 Aligned_cols=242 Identities=18% Similarity=0.216 Sum_probs=150.7
Q ss_pred cccCCCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhhcC
Q 045086 89 LAGGPELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRLSD 168 (522)
Q Consensus 89 La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE 168 (522)
+-.+|.+=.+++-......+..+|-|++.-|.+++.-+++=++... ..+..+..-++..+++-.|+|=+.
T Consensus 11 ~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~----------~~l~~~~~l~id~~ii~SL~~~~~ 80 (371)
T PF14664_consen 11 LKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE----------ESLQILLKLHIDIFIIRSLDRDNK 80 (371)
T ss_pred HHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH----------HHHHHHHHcCCchhhHhhhcccCC
Confidence 4567877445554455666666777888999999999997765432 134566677888899999988654
Q ss_pred CCCChhHHH-HHHHHHHHHHh---hhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHh
Q 045086 169 ADSDPDEMA-AVYNTLATIEN---LIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRL 244 (522)
Q Consensus 169 ~~~~e~e~~-gV~~~L~iiEN---l~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~ 244 (522)
.+.|+. +..-+=.++|= .-++.+.++..++. -.. ..=|.=+..|=|.|+-|+-.+++ .+
T Consensus 81 ---~~~ER~QALkliR~~l~~~~~~~~~~~~vvralva----------iae-~~~D~lr~~cletL~El~l~~P~---lv 143 (371)
T PF14664_consen 81 ---NDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVA----------IAE-HEDDRLRRICLETLCELALLNPE---LV 143 (371)
T ss_pred ---ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHH----------HHh-CCchHHHHHHHHHHHHHHhhCHH---HH
Confidence 455554 33333333331 11223344444432 111 12344477788998887765554 45
Q ss_pred hhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcc--------h--hhh
Q 045086 245 GQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQK--------K--SAY 314 (522)
Q Consensus 245 ~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkek--------k--~sr 314 (522)
...+|+-+|++++.- +.-+ ..+.+-.+++.+|..|..|..+.-+-.++-.+--.-+- . ..-
T Consensus 144 ~~~gG~~~L~~~l~d-------~~~~--~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l 214 (371)
T PF14664_consen 144 AECGGIRVLLRALID-------GSFS--ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERL 214 (371)
T ss_pred HHcCCHHHHHHHHHh-------ccHh--HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHH
Confidence 567899999999862 1112 78899999999999999998888777777654433322 1 123
Q ss_pred hhhHHHHHHHhcCCc---chh-hhHHhhhchhhHHHhhhcCCCCcccccchhhhHHHHHHHHHHHHHHhcc
Q 045086 315 ASAIRALDFAMTKYP---PAC-ERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEELEERLVSLIASLFGG 381 (522)
Q Consensus 315 ~~AlKvLD~Al~~~~---~~C-~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~ 381 (522)
..+-+++-.+|..-+ .-| +.| .|||.|-..+=.. ..+.-+.|+.|+..+|+-
T Consensus 215 ~~s~~ai~~~LrsW~GLl~l~~~~~---~~lksLv~~L~~p------------~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 215 QASAKAISTLLRSWPGLLYLSMNDF---RGLKSLVDSLRLP------------NPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHHHHHhcCCceeeeecCCc---hHHHHHHHHHcCC------------CHHHHHHHHHHHHHHHCC
Confidence 344555555554311 111 222 5777777766321 135678899999999984
No 49
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=54.67 E-value=30 Score=40.19 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=64.9
Q ss_pred CC-ChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhhcCCCC
Q 045086 93 PE-LYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRLSDADS 171 (522)
Q Consensus 93 P~-LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~ 171 (522)
|+ |=..|-+-++...++++|-|++.||.-+++++|.+.+|++.=. |+...+.....+. .+.-++.+|.|+-.-..
T Consensus 513 ~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~---e~i~~ll~~~~~~-tL~ai~~~l~~~~~~~~ 588 (727)
T PF12726_consen 513 PSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRL---EAIQALLQSNFSP-TLSAINWSLRQLTKLKF 588 (727)
T ss_pred HHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHH---HHHHHHHHHhHHH-HHHHHHHHHHHHHhhhh
Confidence 44 4444556799999999999999999999999999999976432 3555555554442 44567788888866411
Q ss_pred ChhHHHHHHHHHHHHHhhhc
Q 045086 172 DPDEMAAVYNTLATIENLIE 191 (522)
Q Consensus 172 ~e~e~~gV~~~L~iiENl~e 191 (522)
=+.=...|....-||+-|++
T Consensus 589 ~~p~pr~vr~~~DIi~~Lcd 608 (727)
T PF12726_consen 589 FEPCPRMVRCLMDIIEVLCD 608 (727)
T ss_pred hcchHHHHHHHHHHHHHHcC
Confidence 11123366666667776665
No 50
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=53.58 E-value=96 Score=34.60 Aligned_cols=113 Identities=21% Similarity=0.207 Sum_probs=70.3
Q ss_pred HHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCC-CCCCcHHHHHHhHHHHHHHhhCChhhHHH-HHHhhhHHHHHH
Q 045086 228 EILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKD-PKTSDEEEMLENLFDSLCCVLMPLENKER-FVKAEGVELMII 305 (522)
Q Consensus 228 EiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrD-P~~~eE~E~mENlFd~Lcs~L~~~~nk~~-Fl~~EGveLM~l 305 (522)
-.|+=|+=+|.-.|..+-+..-.+.+|+.+..|+.|. |.+. +.=.|-=+| |-+ ..++..|.+ |.+..|+++|--
T Consensus 119 KCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~-~~~dlrLLf--llt-ale~~~Rsql~~~l~Gl~~lt~ 194 (532)
T KOG4464|consen 119 KCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDS-SIFDLRLLF--LLT-ALETDHRSQLIAELLGLELLTN 194 (532)
T ss_pred HHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccc-hhhHHHHHH--HHH-HhhHHHHHHHHHHhcccHHHHH
Confidence 4577777788999989988999999999887776654 5544 222222222 111 245677755 678899999977
Q ss_pred HHhcchhhhhhhHHHHHHHhcC-CcchhhhHHhhhchhhHHHhhhcCC
Q 045086 306 IMKQKKSAYASAIRALDFAMTK-YPPACERFVDVLGLKTAFAAFMGKI 352 (522)
Q Consensus 306 mlkekk~sr~~AlKvLD~Al~~-~~~~C~~fVe~~GLktlF~~FM~k~ 352 (522)
.+-.++.-.+ ++.... .|+--++-.|+ ||++|-+|-.+.
T Consensus 195 ~led~lgids------e~n~~~l~pqe~n~a~Ea--LK~~FNvt~~~~ 234 (532)
T KOG4464|consen 195 WLEDKLGIDS------EINVPPLNPQETNRACEA--LKVFFNVTCDSD 234 (532)
T ss_pred HhhccccCCC------CcCCCCCCHHHHHHHHHH--HHHHhheeeccc
Confidence 7666543222 221111 12333444454 899999998763
No 51
>PF05536 Neurochondrin: Neurochondrin
Probab=52.08 E-value=4.1e+02 Score=30.25 Aligned_cols=296 Identities=14% Similarity=0.183 Sum_probs=154.1
Q ss_pred HhhHHHHHHhhhccccCCCChHHHHhcCChHHHHHhhcC--CCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhc
Q 045086 76 EVDLHEELEKLKVLAGGPELYPDVVNLNVIPSILGLLSH--DNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIEN 153 (522)
Q Consensus 76 E~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsH--eNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~ 153 (522)
..=.++.++-|..++++|+=-..|++.|+++.|++.+.| -+.|++..++.-+---.+.+...+.......++..|-..
T Consensus 113 ~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~ 192 (543)
T PF05536_consen 113 LETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARD 192 (543)
T ss_pred hhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHH
Confidence 345889999999999999999999999999999999977 347898888777655555554443222333333332221
Q ss_pred ----------ChHHHHHHHhhhhcCC-CCChhH-------HHHHHH-------------HHHHHHhhhccC-hhHHHHHh
Q 045086 154 ----------NVLELLVQNIQRLSDA-DSDPDE-------MAAVYN-------------TLATIENLIEVK-PSVAELVC 201 (522)
Q Consensus 154 ----------~~~~lLv~nL~RldE~-~~~e~e-------~~gV~~-------------~L~iiENl~e~~-p~~a~~~~ 201 (522)
.++++|...|.+.+-. ...... +.|+.+ ++-+..+|++.- |+. +.
T Consensus 193 fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w---l~ 269 (543)
T PF05536_consen 193 FSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW---LF 269 (543)
T ss_pred HHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh---hc
Confidence 4456677777776310 001111 223322 334444444431 110 11
Q ss_pred hhh-----chHHHHHhhccc--cC-CC-----hh-hhhH--HH-------HHHH----HhcCCh--------HHHHHh-h
Q 045086 202 ERT-----KLLRWLLGKIKV--RE-FD-----SN-KQYA--SE-------ILAI----LLQNST--------ANQKRL-G 245 (522)
Q Consensus 202 ~~t-----~ll~wLL~Ri~~--k~-~d-----~N-k~YA--sE-------iLaI----LLQ~s~--------~nr~~~-~ 245 (522)
..+ +|+--++++... +. .+ .| ..|. +. |+.. |..+.+ +...++ +
T Consensus 270 ~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~ 349 (543)
T PF05536_consen 270 ADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRT 349 (543)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHH
Confidence 111 355555544432 11 11 11 1110 01 1111 122111 111111 1
Q ss_pred hhc-hHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHh---cchhh-------h
Q 045086 246 QMN-GVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMK---QKKSA-------Y 314 (522)
Q Consensus 246 ~~d-GiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlk---ekk~s-------r 314 (522)
.+. -+-..+..| |.+-+++..+.-++-..+-+||+-|.+.++- ++.|-.+|+=.|+. +.... +
T Consensus 350 ~l~e~~~~vle~L---~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~---lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~ 423 (543)
T PF05536_consen 350 SLSETFSAVLEYL---RDVWDESQKDPDFVLASVRVLGAWLAEETSA---LRKEVYGLLPFLLSLYRESFQEAEPAREGP 423 (543)
T ss_pred HHHHHHHHHHHHH---HHhhhccccchHHHHHHHHHHHHHHHhChHH---HHHHHHHHHHHHHHHHhhhhhhcccccccc
Confidence 111 122222222 3333333333338888888999999877764 44445566644444 33333 3
Q ss_pred hhhHHHHHHHhcC---CcchhhhHHhhhchhhHHHhhhcCCCCcccccchhhhHH----HHHHHHHHHHHHhccCC
Q 045086 315 ASAIRALDFAMTK---YPPACERFVDVLGLKTAFAAFMGKIPVNKKNKKERYQEE----LEERLVSLIASLFGGIL 383 (522)
Q Consensus 315 ~~AlKvLD~Al~~---~~~~C~~fVe~~GLktlF~~FM~k~~~~k~~kk~~~~~e----~eEhvisIiaSLlr~l~ 383 (522)
.-+++.|=-|+.+ .+..|.-|+..+|.+.++.-|-+.....+. .....+ .-.-+|+||-++.-.=|
T Consensus 424 ~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~~l~~~~~~~~~---~~~~~~~~~~~l~~~c~illNl~~~e~ 496 (543)
T PF05536_consen 424 LDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCDDLLKILQSPSG---DDDAEDSAEMALVTACGILLNLVVTEP 496 (543)
T ss_pred hhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHHHHHHHHHhccc---CcchhhhhHHHHHHHHHHHHHHHhccc
Confidence 3456666667664 467999999999999999888654321111 111111 22345777776655433
No 52
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=51.97 E-value=67 Score=30.20 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=75.7
Q ss_pred CChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChh--hHHHHHH
Q 045086 219 FDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLE--NKERFVK 296 (522)
Q Consensus 219 ~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~--nk~~Fl~ 296 (522)
.+.-+..|+=+|+-++ +..+. +|-+.+...+...-.+ .+.+-.-+.|.+++.++--|+ +-..|+.
T Consensus 18 ~~~~r~~a~v~l~k~l---~~~~~-----~~~~~~~~~i~~~~~~-----~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~ 84 (157)
T PF11701_consen 18 PEEVRSHALVILSKLL---DAARE-----EFKEKISDFIESLLDE-----GEMDSLIIAFSALTALFPGPPDVGSELFLS 84 (157)
T ss_dssp SCCHHHHHHHHHHHHH---HHHHH-----HHHHHHHHHHHHHHCC-----HHCCHHHHHHHHHHHHCTTTHHHHHHHCCT
T ss_pred CHhHHHHHHHHHHHHH---HHhHH-----HHHHHHHHHHHHHHcc-----ccchhHHHHHHHHHHHhCCCHHHHHHHHhh
Confidence 4555777877777775 33333 3444444444433321 112267799999999996554 3445555
Q ss_pred hhhHHHHHHHHh---cchhhhhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhhh
Q 045086 297 AEGVELMIIIMK---QKKSAYASAIRALDFAMTKYPPACERFVDVLGLKTAFAAFM 349 (522)
Q Consensus 297 ~EGveLM~lmlk---ekk~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~FM 349 (522)
..=++.|+-|+. +....-..++++|.+|.+ ..+|-.|+-.-|..+|=.++.
T Consensus 85 eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 85 EGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp TTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTT
T ss_pred hhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHc
Confidence 555677777887 235677889999999965 558999998888888866663
No 53
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=48.03 E-value=28 Score=42.67 Aligned_cols=108 Identities=14% Similarity=0.262 Sum_probs=78.2
Q ss_pred ccccCCCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccC---CCchHHHHHHHHHhc-ChHHHHHHHh
Q 045086 88 VLAGGPELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLED---NDEPARVLVDALIEN-NVLELLVQNI 163 (522)
Q Consensus 88 ~La~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e---~~e~~~~Lv~aL~~~-~~~~lLv~nL 163 (522)
.+..||.|-..+=.+|-++-+++-..|+|+-|-..+|-+|++|..-..=.+ .-+....++..|... +.+.|....|
T Consensus 2032 L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~~~GLA~Eal 2111 (2235)
T KOG1789|consen 2032 LVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPSLMGLAAEAL 2111 (2235)
T ss_pred HHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcchHHHHHHHHH
Confidence 366789888888899999999999999999999999999999987654222 123344567777665 5557777777
Q ss_pred hhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccC
Q 045086 164 QRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVRE 218 (522)
Q Consensus 164 ~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~ 218 (522)
.|+=-. -+.++..+.. +.+|+++||+-+...+
T Consensus 2112 kR~~~r----------------------~~~eLVAQ~L-K~gLvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2112 KRLMKR----------------------NTGELVAQML-KCGLVPYLLQLLDSST 2143 (2235)
T ss_pred HHHHHH----------------------hHHHHHHHHh-ccCcHHHHHHHhcccc
Confidence 777332 1233333332 5679999999988765
No 54
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=45.14 E-value=3.6e+02 Score=27.64 Aligned_cols=78 Identities=23% Similarity=0.225 Sum_probs=59.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHhcCCCCCccccccHhhHHHHHHhhhccccCCCChHHHHhcCChHHHHHhhcCCCc
Q 045086 38 ALDLRTVKKLVLSFERRLKENIEARLKYPDQPEKFADTEVDLHEELEKLKVLAGGPELYPDVVNLNVIPSILGLLSHDNT 117 (522)
Q Consensus 38 ~lD~~~lkklvl~fEk~i~kNqe~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLsHeNt 117 (522)
.+++..+++++..|+.. +||. --..+.-.+...|.+|.-.....++|+++.+..+|..+|.
T Consensus 8 ~l~~~~l~~Ll~lL~~t------------~dp~-------i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~ 68 (254)
T PF04826_consen 8 ILEAQELQKLLCLLEST------------EDPF-------IQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNP 68 (254)
T ss_pred CcCHHHHHHHHHHHhcC------------CChH-------HHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCCh
Confidence 47888888888877631 2331 1123456677788889888888899999999999999999
Q ss_pred hHHHHHHHHhhhhcccc
Q 045086 118 DIAIDVVHLLQDLTDED 134 (522)
Q Consensus 118 DIai~vi~lL~ELtD~d 134 (522)
.+-..++..|.-+....
T Consensus 69 ~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 69 SVREKALNALNNLSVND 85 (254)
T ss_pred HHHHHHHHHHHhcCCCh
Confidence 99998888888776553
No 55
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=45.00 E-value=69 Score=35.24 Aligned_cols=133 Identities=20% Similarity=0.282 Sum_probs=88.6
Q ss_pred cccHhhHHHHHHhhhccccCC--CChHHHHhcC--ChHHHHHhhcCCCchHHHHHHHHhhhhcccccccC-CCchHHHHH
Q 045086 73 ADTEVDLHEELEKLKVLAGGP--ELYPDVVNLN--VIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLED-NDEPARVLV 147 (522)
Q Consensus 73 mdSE~dLd~~Ik~l~~La~~P--~LYp~~v~l~--~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e-~~e~~~~Lv 147 (522)
.+.-..+-=++.-++-+...+ +-||.+--.- .+++|..-|.+.++=|..+|+.++..+.+.+...+ .++.|..++
T Consensus 267 ~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~ 346 (464)
T PF11864_consen 267 KRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIIL 346 (464)
T ss_pred cccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHH
Confidence 555555666666666655554 5677743333 78899999999999889999999999997544433 345788887
Q ss_pred HHHHhcChHHHHHHHhhhhcCCCC-C---hhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhcc
Q 045086 148 DALIENNVLELLVQNIQRLSDADS-D---PDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIK 215 (522)
Q Consensus 148 ~aL~~~~~~~lLv~nL~RldE~~~-~---e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~ 215 (522)
+.+.. +++++.-.+.... . +.....++..+..||++.+ +++. .|.+.+++.++.+-..
T Consensus 347 ~i~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~-~~~~---~g~~~~~~~f~~~~~~ 408 (464)
T PF11864_consen 347 DIIEE------IFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYE-QHDF---NGPKDKLFNFFERVHS 408 (464)
T ss_pred HHHHH------HHhhccccccccccccchHHHHHHHHHHHHHHHHHHh-CCCc---CccHHHHHHHHHHHhc
Confidence 77655 5555555544310 1 5677888999999999988 3443 2334456666655433
No 56
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.81 E-value=2.8e+02 Score=33.63 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=35.4
Q ss_pred CChhhhhHHHH--HHHHhcCChHHHHHhhhhchHHHHHHHHhhccc
Q 045086 219 FDSNKQYASEI--LAILLQNSTANQKRLGQMNGVDVLLQAVAMYKS 262 (522)
Q Consensus 219 ~d~Nk~YAsEi--LaILLQ~s~~nr~~~~~~dGiD~LL~~la~Yrk 262 (522)
.-.|+.|..=| |+.+--+|+-.+..+-+.|-.+.|..++..|-+
T Consensus 395 ~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 395 ILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSK 440 (1051)
T ss_pred cccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCc
Confidence 55688899887 556666667777788888999999999999976
No 57
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=42.41 E-value=30 Score=23.69 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=22.7
Q ss_pred hHHHHHhhcCCCchHHHHHHHHhhhhc
Q 045086 105 IPSILGLLSHDNTDIAIDVVHLLQDLT 131 (522)
Q Consensus 105 v~sL~~LLsHeNtDIai~vi~lL~ELt 131 (522)
++.++++|+|+|.++-.+++.-|..+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999998887764
No 58
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=41.05 E-value=1.6e+02 Score=36.80 Aligned_cols=122 Identities=16% Similarity=0.246 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhhhccChhHHHHHhhhhc---hHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHH
Q 045086 178 AVYNTLATIENLIEVKPSVAELVCERTK---LLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLL 254 (522)
Q Consensus 178 gV~~~L~iiENl~e~~p~~a~~~~~~t~---ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL 254 (522)
-|.-+|.-+-|++.-+|++|.-++.+.. .++-+..-|..+.-.+-.+.|-+++.++.-+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan------------------ 1802 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN------------------ 1802 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc------------------
Confidence 4556888899999999999888877653 3566666666666666666666666655331
Q ss_pred HHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcchhhhhhhHHHHHHHhcCCcchhhh
Q 045086 255 QAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQKKSAYASAIRALDFAMTKYPPACER 334 (522)
Q Consensus 255 ~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkekk~sr~~AlKvLD~Al~~~~~~C~~ 334 (522)
.++++|+-.|.. +-+.+-||...-.+|.++|.|| |||+..+.--.-
T Consensus 1803 ----------------~~Cv~~~a~~~v-----------------L~~LL~lLHS~PS~R~~vL~vL-YAL~S~~~i~ke 1848 (2235)
T KOG1789|consen 1803 ----------------KECVTDLATCNV-----------------LTTLLTLLHSQPSMRARVLDVL-YALSSNGQIGKE 1848 (2235)
T ss_pred ----------------cHHHHHHHhhhH-----------------HHHHHHHHhcChHHHHHHHHHH-HHHhcCcHHHHH
Confidence 233444443331 1123557778788899999998 888877666667
Q ss_pred HHhhhchhhHHHhhhcC
Q 045086 335 FVDVLGLKTAFAAFMGK 351 (522)
Q Consensus 335 fVe~~GLktlF~~FM~k 351 (522)
-.+.+||-+|-++|--.
T Consensus 1849 A~~hg~l~yil~~~c~~ 1865 (2235)
T KOG1789|consen 1849 ALEHGGLMYILSILCLT 1865 (2235)
T ss_pred HHhcCchhhhhHHHhcc
Confidence 78889999999999754
No 59
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=38.77 E-value=94 Score=28.92 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=58.8
Q ss_pred HHHHHHHhcChHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhh
Q 045086 145 VLVDALIENNVLELLVQNIQRLSDADS-DPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNK 223 (522)
Q Consensus 145 ~Lv~aL~~~~~~~lLv~nL~RldE~~~-~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk 223 (522)
..+..+++++.++.|++.|.++..... .+.+..-.|.++..+=.++..... ...+......+.+|..-+-.+.. .-+
T Consensus 98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G-~~~v~~~~~~v~~i~~~L~s~~~-~~r 175 (187)
T PF06371_consen 98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYG-LEAVLSHPDSVNLIALSLDSPNI-KTR 175 (187)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHH-HHHHHCSSSHHHHHHHT--TTSH-HHH
T ss_pred hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHH-HHHHHcCcHHHHHHHHHHCCCCH-HHH
Confidence 457778888999999999999876421 345566677777777777763433 44456677788888877764433 356
Q ss_pred hhHHHHHHHH
Q 045086 224 QYASEILAIL 233 (522)
Q Consensus 224 ~YAsEiLaIL 233 (522)
..|.|||+.+
T Consensus 176 ~~~leiL~~l 185 (187)
T PF06371_consen 176 KLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7788998876
No 60
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=37.56 E-value=2.8e+02 Score=24.19 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=62.5
Q ss_pred HhhhhcccccccCCCchHHHHHHHHHhc-ChHHHHHHHh-hhhcCCCCChhHHHHHHHHHHHHHhhhcc-ChhHHHHHhh
Q 045086 126 LLQDLTDEDVLEDNDEPARVLVDALIEN-NVLELLVQNI-QRLSDADSDPDEMAAVYNTLATIENLIEV-KPSVAELVCE 202 (522)
Q Consensus 126 lL~ELtD~d~~~e~~e~~~~Lv~aL~~~-~~~~lLv~nL-~RldE~~~~e~e~~gV~~~L~iiENl~e~-~p~~a~~~~~ 202 (522)
++.+.|+++....+......+.+..-+. ....-+++.| .||+.. .-.-++.+|.++|.++.- .+.+...++.
T Consensus 4 ~v~~AT~~~~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~-----~~~~~lkaL~lLe~lvkN~g~~f~~~i~~ 78 (115)
T cd00197 4 TVEKATSNENMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNK-----NPHVVLKALTLLEYCVKNCGERFHQEVAS 78 (115)
T ss_pred HHHHHcCCCCCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 4567888875544333455666666544 3445667776 688653 567889999999999873 3456666665
Q ss_pred hhchHHHHHhhcccc----CCChh-hhhHHHHHHHH
Q 045086 203 RTKLLRWLLGKIKVR----EFDSN-KQYASEILAIL 233 (522)
Q Consensus 203 ~t~ll~wLL~Ri~~k----~~d~N-k~YAsEiLaIL 233 (522)
+ .++.-+++-...+ ..+.| |.++.+++...
T Consensus 79 ~-~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 79 N-DFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred h-HHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 4 3666666531121 23333 77777776543
No 61
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.67 E-value=2.5e+02 Score=33.87 Aligned_cols=150 Identities=25% Similarity=0.285 Sum_probs=76.7
Q ss_pred CChHHHHhc-CChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhhcCCCCC
Q 045086 94 ELYPDVVNL-NVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRLSDADSD 172 (522)
Q Consensus 94 ~LYp~~v~l-~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~~ 172 (522)
++-..+..+ -+|++|+.||.----=|..++|=+|.|||-... ....||.- + ++++-|.+-++ |.+ .
T Consensus 156 e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~------~IQKlVAF--E-NaFerLfsIIe---eEG-g 222 (970)
T KOG0946|consen 156 ELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS------SIQKLVAF--E-NAFERLFSIIE---EEG-G 222 (970)
T ss_pred HHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc------hHHHHHHH--H-HHHHHHHHHHH---hcC-C
Confidence 444434333 356666666633333455666666666665431 22222211 1 12222222211 110 1
Q ss_pred hhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCC-C-----------hhhhhHHHHHHHHhc-----
Q 045086 173 PDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREF-D-----------SNKQYASEILAILLQ----- 235 (522)
Q Consensus 173 e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~-d-----------~Nk~YAsEiLaILLQ----- 235 (522)
-+=---|..||.++=||+- +...-..+...++.++-|.+-+..-.| | +|--.|-.|+..|+-
T Consensus 223 ~dGgIVveDCL~ll~NLLK-~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~ 301 (970)
T KOG0946|consen 223 LDGGIVVEDCLILLNNLLK-NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTS 301 (970)
T ss_pred CCCcchHHHHHHHHHHHHh-hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcH
Confidence 1112347789999999997 333334466677788887777765442 2 133344445555542
Q ss_pred -CChHHHHHhhhhchHHHHHHHH
Q 045086 236 -NSTANQKRLGQMNGVDVLLQAV 257 (522)
Q Consensus 236 -~s~~nr~~~~~~dGiD~LL~~l 257 (522)
....|++.+....++++|..++
T Consensus 302 ~~~~q~qk~l~ss~ll~~Lc~il 324 (970)
T KOG0946|consen 302 SITHQNQKALVSSHLLDVLCTIL 324 (970)
T ss_pred HHHHHHHHHHHHcchHHHHHHHH
Confidence 2235556666677788777654
No 62
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=36.54 E-value=3.2e+02 Score=26.19 Aligned_cols=162 Identities=22% Similarity=0.262 Sum_probs=72.8
Q ss_pred CChHHHHhc--CChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHH-hhhhcCCC
Q 045086 94 ELYPDVVNL--NVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQN-IQRLSDAD 170 (522)
Q Consensus 94 ~LYp~~v~l--~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~n-L~RldE~~ 170 (522)
+.++.|+.. ..+..+...++=.|+=++..++.++.++...-- ......++. ++.. |.++.++
T Consensus 42 ~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~-----~~~~~~~~~---------~l~~Ll~~~~~~- 106 (228)
T PF12348_consen 42 DFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG-----SHFEPYADI---------LLPPLLKKLGDS- 106 (228)
T ss_dssp ---HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG-----GGGHHHHHH---------HHHHHHHGGG---
T ss_pred ccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-----HhHHHHHHH---------HHHHHHHHHccc-
Confidence 345555432 556677777777788888999998888875531 122222222 3333 3666666
Q ss_pred CChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchH
Q 045086 171 SDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGV 250 (522)
Q Consensus 171 ~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGi 250 (522)
..-=++.+.+||..+=.-+...|.+ ++..+..-.+.| -.+-|.+|++.|..+++..+.+...+..-.++
T Consensus 107 -~~~i~~~a~~~L~~i~~~~~~~~~~---------~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 107 -KKFIREAANNALDAIIESCSYSPKI---------LLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp --HHHHHHHHHHHHHHHTTS-H--HH---------HHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred -cHHHHHHHHHHHHHHHHHCCcHHHH---------HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 6666666666655443322211222 122222222222 35567899999999999877444445433445
Q ss_pred HHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHH
Q 045086 251 DVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCC 283 (522)
Q Consensus 251 D~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs 283 (522)
+.+...+...-. ||. .+=.+..-++|..+.+
T Consensus 176 ~~l~~~l~~~l~-D~~-~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 176 KQLVKALVKLLS-DAD-PEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHT-SS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCC-HHHHHHHHHHHHHHHH
Confidence 666666554432 221 1223444455555433
No 63
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=36.10 E-value=1.2e+02 Score=34.55 Aligned_cols=111 Identities=27% Similarity=0.290 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhcChHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccC-CC
Q 045086 142 PARVLVDALIENNVLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVRE-FD 220 (522)
Q Consensus 142 ~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~-~d 220 (522)
-+..|-|++-..+.+++|+.-+.-=+-...+.-++.-+.--.-+-||. + .++... +.-++.-.+.++ ++
T Consensus 168 vAq~LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~-----d---~va~~~--~~~Il~lAK~~e~~e 237 (832)
T KOG3678|consen 168 VAQGLCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENR-----D---RVARIG--LGVILNLAKEREPVE 237 (832)
T ss_pred HHHhhhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhh-----h---HHhhcc--chhhhhhhhhcCcHH
Confidence 455677888778888887765543221100222222222222222331 1 222211 344444444443 77
Q ss_pred hhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCC
Q 045086 221 SNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPK 266 (522)
Q Consensus 221 ~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~ 266 (522)
+-+.-| -||--+...|++...++...+|+|..| =-+||.||.
T Consensus 238 ~aR~~~-~il~~mFKHSeet~~~Lvaa~~lD~vl---~~~rRt~P~ 279 (832)
T KOG3678|consen 238 LARSVA-GILEHMFKHSEETCQRLVAAGGLDAVL---YWCRRTDPA 279 (832)
T ss_pred HHHHHH-HHHHHHhhhhHHHHHHHHhhcccchhe---eecccCCHH
Confidence 777666 578888999999999999999999876 567888885
No 64
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=35.63 E-value=86 Score=22.41 Aligned_cols=39 Identities=23% Similarity=0.271 Sum_probs=29.4
Q ss_pred ChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHh
Q 045086 237 STANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCV 284 (522)
Q Consensus 237 s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~ 284 (522)
|++|+..+.+.+||..|++.+. ....+..++.--+|+.+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~---------~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLK---------SPDPEVQEEAAWALGNL 39 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTT---------SSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHc---------CCCHHHHHHHHHHHHHH
Confidence 5789999999999999999996 23445666666666554
No 65
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=34.05 E-value=5.6e+02 Score=28.34 Aligned_cols=250 Identities=18% Similarity=0.215 Sum_probs=130.6
Q ss_pred ccHhhH-HHHHHhhhccccCCCChHHHH-hcCChHHHHHhhcCCCchHH-------------------------HHHHHH
Q 045086 74 DTEVDL-HEELEKLKVLAGGPELYPDVV-NLNVIPSILGLLSHDNTDIA-------------------------IDVVHL 126 (522)
Q Consensus 74 dSE~dL-d~~Ik~l~~La~~P~LYp~~v-~l~~v~sL~~LLsHeNtDIa-------------------------i~vi~l 126 (522)
++|.|. +.++=+|..+|...+-|...| ..|+...+++||...-.||+ -.++.+
T Consensus 168 s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpi 247 (526)
T COG5064 168 STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPI 247 (526)
T ss_pred CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHH
Confidence 456664 566888999999877766665 89999999999986666664 345566
Q ss_pred hhhhc---ccccccCC-------CchHHHHHHHHHhcChHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChhH
Q 045086 127 LQDLT---DEDVLEDN-------DEPARVLVDALIENNVLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPSV 196 (522)
Q Consensus 127 L~ELt---D~d~~~e~-------~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~ 196 (522)
|..|+ |+|++.+. .++...-+++.++.++..-||.-|+. |+ ++-..-+|--+=|++. -.+.
T Consensus 248 L~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~--~s------a~iqtPalR~vGNIVT-G~D~ 318 (526)
T COG5064 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSH--ES------AKIQTPALRSVGNIVT-GSDD 318 (526)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcC--cc------ccccCHHHHhhcCeee-cCcc
Confidence 66554 44544321 11333445555666666555555543 21 1112223444445443 2233
Q ss_pred HHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhc--cc------------
Q 045086 197 AELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMY--KS------------ 262 (522)
Q Consensus 197 a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~Y--rk------------ 262 (522)
.+++.-+.++|+.+..-+..+.- .-|--|+=-++=+.-++.+.-+.+-+.|-|--|...++.| +-
T Consensus 319 QTqviI~~G~L~a~~~lLs~~ke-~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 319 QTQVIINCGALKAFRSLLSSPKE-NIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred ceehheecccHHHHHHHhcChhh-hhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344455667776665543211 1111222223334444444444555556665555554443 11
Q ss_pred ----CCCCCCcHHHH-HHh-HHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcchhhhhhhHHHHHHHhcC-CcchhhhH
Q 045086 263 ----KDPKTSDEEEM-LEN-LFDSLCCVLMPLENKERFVKAEGVELMIIIMKQKKSAYASAIRALDFAMTK-YPPACERF 335 (522)
Q Consensus 263 ----rDP~~~eE~E~-mEN-lFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkekk~sr~~AlKvLD~Al~~-~~~~C~~f 335 (522)
+-| |-.-| |+| +.+.||++|...+||--=+...|+|=.+ |-+++ |-+..| .+.--..|
T Consensus 398 sgg~~~P---D~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniL---k~Ge~---------d~~~~~~nin~ya~~ 462 (526)
T COG5064 398 SGGLNRP---DIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENIL---KVGEQ---------DRLRYGKNINIYAVY 462 (526)
T ss_pred ccccCCc---hHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHH---hhhhH---------HHHhccCCccHHHHH
Confidence 111 22222 333 4477888888888875444444444222 22221 111122 12245678
Q ss_pred Hh-hhchhhHHHhh
Q 045086 336 VD-VLGLKTAFAAF 348 (522)
Q Consensus 336 Ve-~~GLktlF~~F 348 (522)
|| ++|.-.||.+=
T Consensus 463 vE~Aggmd~I~~~Q 476 (526)
T COG5064 463 VEKAGGMDAIHGLQ 476 (526)
T ss_pred HHhcccHHHHHHhh
Confidence 88 88888887654
No 66
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=32.58 E-value=5.8e+02 Score=26.35 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=45.0
Q ss_pred chHHHHHhhccccC-C--ChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHH
Q 045086 205 KLLRWLLGKIKVRE-F--DSNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSL 281 (522)
Q Consensus 205 ~ll~wLL~Ri~~k~-~--d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~L 281 (522)
..+||++..+.... + ++.-.-+++.|+-+.+ ..|...|=+++..|-|+-- -+..+|+--++.++
T Consensus 111 a~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~-----------~~~~~~La~il~~ya~~~f--r~~~dfl~~v~~~l 177 (262)
T PF14225_consen 111 ALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE-----------AQGLPNLARILSSYAKGRF--RDKDDFLSQVVSYL 177 (262)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHHHHHH-----------hCCCccHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 37999999998877 4 4666667777777652 2233334444455544443 35778888888888
Q ss_pred HHhhC
Q 045086 282 CCVLM 286 (522)
Q Consensus 282 cs~L~ 286 (522)
|..-.
T Consensus 178 ~~~f~ 182 (262)
T PF14225_consen 178 REAFF 182 (262)
T ss_pred HHHhC
Confidence 86543
No 67
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=31.87 E-value=36 Score=27.39 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=27.9
Q ss_pred CChHHHHHhhcCCCchHHHHHHHHhhhhcccc
Q 045086 103 NVIPSILGLLSHDNTDIAIDVVHLLQDLTDED 134 (522)
Q Consensus 103 ~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d 134 (522)
.+++.|+.+|.|+|+.+...++.-|..+-+++
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~ 62 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRIGDPE 62 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 35888999999999999999999999986544
No 68
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=30.97 E-value=1.6e+02 Score=25.78 Aligned_cols=124 Identities=25% Similarity=0.345 Sum_probs=65.0
Q ss_pred cCCCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccc--cC--CCchHHHHHHHHHhc--ChHHHHHHHhh
Q 045086 91 GGPELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVL--ED--NDEPARVLVDALIEN--NVLELLVQNIQ 164 (522)
Q Consensus 91 ~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~--~e--~~e~~~~Lv~aL~~~--~~~~lLv~nL~ 164 (522)
..|+-+|.| +..+++++.. |..-..-++.+|..+.++=.. .. ..+.-..+.++|-++ .+++.+.+-++
T Consensus 19 ~~P~~Wp~~-----l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~ 92 (148)
T PF08389_consen 19 DWPQQWPDF-----LEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILS 92 (148)
T ss_dssp HTTTTSTTH-----HHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HChhhCchH-----HHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777765 4567777766 333334445444444333111 11 112334455555444 34445555555
Q ss_pred hhcCCCCChhHHHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHH
Q 045086 165 RLSDADSDPDEMAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEIL 230 (522)
Q Consensus 165 RldE~~~~e~e~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiL 230 (522)
.-... . ...-+..+|.++...+.. -.... +. ++++++++++-+....+ +..|+|.|
T Consensus 93 ~~~~~--~--~~~~~~~~L~~l~s~i~~-~~~~~-i~-~~~~l~~~~~~l~~~~~---~~~A~~cl 148 (148)
T PF08389_consen 93 QSSSE--A--NEELVKAALKCLKSWISW-IPIEL-II-NSNLLNLIFQLLQSPEL---REAAAECL 148 (148)
T ss_dssp HHCHC--C--HHHHHHHHHHHHHHHTTT-S-HHH-HH-SSSHHHHHHHHTTSCCC---HHHHHHHH
T ss_pred hhccc--c--HHHHHHHHHHHHHHHHHh-CCHHH-hc-cHHHHHHHHHHcCCHHH---HHHHHHhC
Confidence 44332 2 244566677777777662 22211 33 46699999998854444 66677765
No 69
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=30.62 E-value=2e+02 Score=25.82 Aligned_cols=64 Identities=22% Similarity=0.299 Sum_probs=48.7
Q ss_pred HHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHH----HHHHHhcCChHHHHHhhhhc
Q 045086 181 NTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASE----ILAILLQNSTANQKRLGQMN 248 (522)
Q Consensus 181 ~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsE----iLaILLQ~s~~nr~~~~~~d 248 (522)
.++.+|=||+--+|.+.+.+....+ ++++|+... +|.+--|..| .+--|+.++++|+..+.++.
T Consensus 5 ~lvrlianl~~~~~~~Qd~vr~~~G-i~liL~~c~---iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 5 DLVRLIANLCYKNKEVQDLVRELGG-IPLILSCCN---IDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCC-hHHHHHhcC---CCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 4677888999888899998887665 999998875 5555444444 46669999999998887543
No 70
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=30.49 E-value=2.5e+02 Score=25.11 Aligned_cols=65 Identities=17% Similarity=0.248 Sum_probs=41.0
Q ss_pred HhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHh-hhhcCCCCChhHHHHHHHHHHHHHhhhcc
Q 045086 126 LLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNI-QRLSDADSDPDEMAAVYNTLATIENLIEV 192 (522)
Q Consensus 126 lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL-~RldE~~~~e~e~~gV~~~L~iiENl~e~ 192 (522)
.+.|-|..|.-.-.......+..+-.+..-+..+++-| .||-.. ....-.-||.+|.++|.|+.-
T Consensus 7 ~v~eAT~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~--~~k~wr~~~KaL~ll~yLl~n 72 (125)
T PF01417_consen 7 KVREATSNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKS--DGKNWRHVYKALTLLEYLLKN 72 (125)
T ss_dssp HHHHHTSSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSS--TSSGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--CCcchhHHHHHHHHHHHHHHH
Confidence 35677777643222234455555544444445566666 577344 677888999999999999973
No 71
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=29.82 E-value=1.6e+02 Score=28.48 Aligned_cols=101 Identities=15% Similarity=0.156 Sum_probs=47.5
Q ss_pred hhHHHHHHhhhHHHHHHHHhcc---h----------------hhhhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhhh
Q 045086 289 ENKERFVKAEGVELMIIIMKQK---K----------------SAYASAIRALDFAMTKYPPACERFVDVLGLKTAFAAFM 349 (522)
Q Consensus 289 ~nk~~Fl~~EGveLM~lmlkek---k----------------~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~FM 349 (522)
.++..|...-.+++++-+|+.. . .--..+.++|-+-..+++.||..+.+..+ ++++.||
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~--~l~~~~~ 111 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLD--FLISIFM 111 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-------HH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHh--HHHHHHH
Confidence 4555577777778888888742 1 12345678888877888999999999866 4477777
Q ss_pred cCCCCcccccchhhhHHHHHHHHHHHHHHhccCCCcchHHHHHHHhhhhhhHHHHHHHHHHHH
Q 045086 350 GKIPVNKKNKKERYQEELEERLVSLIASLFGGILRGSRRERLLSKFIENECEKIDRLMELYMR 412 (522)
Q Consensus 350 ~k~~~~k~~kk~~~~~e~eEhvisIiaSLlr~l~~~s~r~RlLaKFvE~d~EKvdRL~eL~~~ 412 (522)
...- ...=+....+.+++++-+ -++.++.|.. ++.++++-.+
T Consensus 112 ~~~~------------~~~~~~~d~l~~i~~dN~------~L~~~i~e~~---I~~~i~ll~~ 153 (207)
T PF01365_consen 112 QLQI------------GYGLGALDVLTEIFRDNP------ELCESISEEH---IEKFIELLRK 153 (207)
T ss_dssp CCCH-------------TTHHHHHHHHHHHTT-------------------------------
T ss_pred Hhhc------------cCCchHHHHHHHHHHCcH------HHHHHhhHHH---HHHHHHHHHH
Confidence 5411 111244556777888765 5677776654 4444444333
No 72
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.36 E-value=5.9e+02 Score=26.69 Aligned_cols=127 Identities=15% Similarity=0.183 Sum_probs=75.8
Q ss_pred HHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhhhHHHHHHHHhcc-----------h-hhhhhhH
Q 045086 251 DVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAEGVELMIIIMKQK-----------K-SAYASAI 318 (522)
Q Consensus 251 D~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~EGveLM~lmlkek-----------k-~sr~~Al 318 (522)
..++++++.|...+- ...+..++.+|+.++..-... .+...-|.+++-.+|.++ + ....+||
T Consensus 4 ~~l~~~W~~~~~~n~-----~~~~~~~~~~L~~~l~~ls~~-~~~~~~g~~l~~~iL~~~~k~lyr~L~~~~~~~~~~~L 77 (330)
T PF11707_consen 4 SELLQIWSYAAQVNN-----HSLLSLVSSVLALLLKKLSSD-LSFQSYGLELIRSILQNHLKLLYRSLSSSKPSLTNPAL 77 (330)
T ss_pred HHHHHHHHHhcCCCC-----hhhHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 457788887765332 145677788887777533222 225566666666655543 2 2235789
Q ss_pred HHHHHHhc-CCcchhhhHHhhhchhh-HHHhhhcCCCCcccccchhhh--HHHHHHHHHHHHHHhccCC
Q 045086 319 RALDFAMT-KYPPACERFVDVLGLKT-AFAAFMGKIPVNKKNKKERYQ--EELEERLVSLIASLFGGIL 383 (522)
Q Consensus 319 KvLD~Al~-~~~~~C~~fVe~~GLkt-lF~~FM~k~~~~k~~kk~~~~--~e~eEhvisIiaSLlr~l~ 383 (522)
++|.-..+ +++..|..|.....+.. .|+-++...+........... ...-...+..+-|++++.+
T Consensus 78 rLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~ 146 (330)
T PF11707_consen 78 RLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGD 146 (330)
T ss_pred HHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCC
Confidence 99998888 77788999999887763 565555431110101000000 2445667888888888763
No 73
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.80 E-value=1.3e+02 Score=37.52 Aligned_cols=81 Identities=31% Similarity=0.460 Sum_probs=59.1
Q ss_pred HHHHHHHhcCChHHHHHhhhhchHH-------------HHHHHHhhcccCCCCCCcHHHHH-------------------
Q 045086 227 SEILAILLQNSTANQKRLGQMNGVD-------------VLLQAVAMYKSKDPKTSDEEEML------------------- 274 (522)
Q Consensus 227 sEiLaILLQ~s~~nr~~~~~~dGiD-------------~LL~~la~YrkrDP~~~eE~E~m------------------- 274 (522)
-.+|-+|+.++.+|++.|.+.+|+- .|||+++..--.||+..+-.|.|
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflindehRSslLrivscLitvdpkqvhhqelmalVdtLksgmvt~Isgeqy 742 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLINDEHRSSLLRIVSCLITVDPKQVHHQELMALVDTLKSGMVTRISGEQY 742 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeechHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHhcceeccchhHH
Confidence 4578899999999999999999864 57899999999999966544443
Q ss_pred HhHHHHHHHhhCC--------hhhHHHHHHhhhHHHHHHHH
Q 045086 275 ENLFDSLCCVLMP--------LENKERFVKAEGVELMIIIM 307 (522)
Q Consensus 275 ENlFd~Lcs~L~~--------~~nk~~Fl~~EGveLM~lml 307 (522)
+=.|+.+|.++-. -..+..|.++-|.-|.+-.|
T Consensus 743 klhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 743 KLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTL 783 (2799)
T ss_pred HHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHH
Confidence 3346777766521 12345588888887765554
No 74
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=28.30 E-value=88 Score=30.28 Aligned_cols=82 Identities=20% Similarity=0.377 Sum_probs=56.5
Q ss_pred HHHHhhhHHHHHHHHhcchhhhhhhHHHHHHHhcCCcchhhhHHh--hhchhhHHHhhhcCCC--CcccccchhhhHHHH
Q 045086 293 RFVKAEGVELMIIIMKQKKSAYASAIRALDFAMTKYPPACERFVD--VLGLKTAFAAFMGKIP--VNKKNKKERYQEELE 368 (522)
Q Consensus 293 ~Fl~~EGveLM~lmlkekk~sr~~AlKvLD~Al~~~~~~C~~fVe--~~GLktlF~~FM~k~~--~~k~~kk~~~~~e~e 368 (522)
-|.+..|+.+.+.|+-++....+..=..|-|+|+ ++..+.| .-++.++.+.|.+|+- +.+. ..+...-
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~----af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~----~~d~~i~ 77 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALT----AFVELMEHGIVSWDTLSDSFIKKIASYVNSS----AMDASIL 77 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHH----HHHHHHhcCcCchhhccHHHHHHHHHHHccc----cccchHH
Confidence 5999999999999999988633323377888887 5555666 3478888999998742 1111 1234555
Q ss_pred HHHHHHHHHHhccC
Q 045086 369 ERLVSLIASLFGGI 382 (522)
Q Consensus 369 EhvisIiaSLlr~l 382 (522)
...++|+-|+.-+-
T Consensus 78 q~sLaILEs~Vl~S 91 (160)
T PF11841_consen 78 QRSLAILESIVLNS 91 (160)
T ss_pred HHHHHHHHHHHhCC
Confidence 67778888887653
No 75
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=28.04 E-value=1.5e+02 Score=32.48 Aligned_cols=150 Identities=15% Similarity=0.201 Sum_probs=90.1
Q ss_pred HHHhhhccccCCCC-hHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHH
Q 045086 82 ELEKLKVLAGGPEL-YPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLV 160 (522)
Q Consensus 82 ~Ik~l~~La~~P~L-Yp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv 160 (522)
+|+....+-|-.+. -..++..|+.+.+..||+|+---|--.++=.+.-+|--.+ +++ .+.++.+++..||
T Consensus 305 alR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnt-----eqi----qavid~nliPpLi 375 (526)
T COG5064 305 ALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNT-----EQI----QAVIDANLIPPLI 375 (526)
T ss_pred HHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCH-----HHH----HHHHhcccchHHH
Confidence 34555444444443 4566799999999999999999998888877776665432 344 5556669999999
Q ss_pred HHhhhhcCCCCChhH-HHHHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChH
Q 045086 161 QNIQRLSDADSDPDE-MAAVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTA 239 (522)
Q Consensus 161 ~nL~RldE~~~~e~e-~~gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~ 239 (522)
.-|+--+=. -.-| -=+|.|..+=== -+|+...-++. +++++= |+-+|- ...
T Consensus 376 ~lls~ae~k--~kKEACWAisNatsgg~----~~PD~iryLv~-qG~Ikp--------------------Lc~~L~-~~d 427 (526)
T COG5064 376 HLLSSAEYK--IKKEACWAISNATSGGL----NRPDIIRYLVS-QGFIKP--------------------LCDLLD-VVD 427 (526)
T ss_pred HHHHHHHHH--HHHHHHHHHHhhhcccc----CCchHHHHHHH-ccchhH--------------------HHHHHh-ccC
Confidence 988765543 2222 224444322111 14555444442 223222 222222 223
Q ss_pred HHHHhhhhchHHHHHHHHhhcccCCCCCC
Q 045086 240 NQKRLGQMNGVDVLLQAVAMYKSKDPKTS 268 (522)
Q Consensus 240 nr~~~~~~dGiD~LL~~la~YrkrDP~~~ 268 (522)
|+..-..+|+|+-+|+.=-+.|-++|...
T Consensus 428 Nkiiev~LD~~eniLk~Ge~d~~~~~~ni 456 (526)
T COG5064 428 NKIIEVALDAIENILKVGEQDRLRYGKNI 456 (526)
T ss_pred ccchhhhHHHHHHHHhhhhHHHHhccCCc
Confidence 43333348999999988888888888765
No 76
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=27.93 E-value=48 Score=30.03 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=22.2
Q ss_pred ChHHHHhcC--ChHHHHHhhcCCCchHHH-HHHHHhh
Q 045086 95 LYPDVVNLN--VIPSILGLLSHDNTDIAI-DVVHLLQ 128 (522)
Q Consensus 95 LYp~~v~l~--~v~sL~~LLsHeNtDIai-~vi~lL~ 128 (522)
.|.+|-..| .-.-|+.||+|||+++.. ++.-+|.
T Consensus 37 ~~~eLk~r~gd~r~aLl~LL~hpn~~VRl~AA~~~L~ 73 (106)
T PF09450_consen 37 IYDELKSRGGDQRDALLPLLKHPNMQVRLWAAAHTLR 73 (106)
T ss_dssp HHHHHHHSTT-GGGGGGGGGGSS-HHHHHHHHHTTTT
T ss_pred HHHHHHhcCcchHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 455665555 457899999999999963 3444443
No 77
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=26.54 E-value=1.8e+02 Score=29.36 Aligned_cols=38 Identities=8% Similarity=0.050 Sum_probs=24.2
Q ss_pred HHHHHhHHHHHHHhhCChhhHHH--------HHHhhhHHHHHHHHh
Q 045086 271 EEMLENLFDSLCCVLMPLENKER--------FVKAEGVELMIIIMK 308 (522)
Q Consensus 271 ~E~mENlFd~Lcs~L~~~~nk~~--------Fl~~EGveLM~lmlk 308 (522)
+|-...+|+|||.++-..+.+-+ +.++.+.+=+.-.+.
T Consensus 68 ee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~ 113 (206)
T PLN03060 68 ATDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNS 113 (206)
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 45567999999999976665533 445555544444443
No 78
>COG4381 Mu-like prophage protein gp46 [Function unknown]
Probab=26.51 E-value=37 Score=31.73 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=27.6
Q ss_pred hHHHHHhhccccC--CChhhhhHHHHHHHHhcCChH
Q 045086 206 LLRWLLGKIKVRE--FDSNKQYASEILAILLQNSTA 239 (522)
Q Consensus 206 ll~wLL~Ri~~k~--~d~Nk~YAsEiLaILLQ~s~~ 239 (522)
=--|+|+|-|.-. .+.-++||+|-|+.|.+++..
T Consensus 60 SrLwlL~ReK~l~~V~~~Ae~YA~eALqwlv~sg~a 95 (135)
T COG4381 60 SRLWLLRREKDLQRVSLLAEQYADEALQWLVKSGRA 95 (135)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4569999988643 667799999999999997654
No 79
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=25.49 E-value=3.8e+02 Score=28.70 Aligned_cols=167 Identities=13% Similarity=0.192 Sum_probs=86.5
Q ss_pred CchHHHHHHHHHhcChHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccCh-----hHHHHHhhh-hchHHHHHhh
Q 045086 140 DEPARVLVDALIENNVLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKP-----SVAELVCER-TKLLRWLLGK 213 (522)
Q Consensus 140 ~e~~~~Lv~aL~~~~~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p-----~~a~~~~~~-t~ll~wLL~R 213 (522)
++.+..|+..+...+++..|+.+|..|+=. ..-|...|++ |++--++ ..+.-++.+ ..++.+|++-
T Consensus 62 ~e~v~qLa~Ei~~~dll~~Li~~L~~L~fE--srKdv~~if~------~llr~~~~~~~~p~v~yl~~~~peil~~L~~g 133 (335)
T PF08569_consen 62 PEQVAQLAQEIYRSDLLYLLIRNLPKLDFE--SRKDVAQIFS------NLLRRQIGSRSPPTVDYLERHRPEILDILLRG 133 (335)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHTGGGS-HH--HHHHHHHHHH------HHHT--BTTB--HHHHHHHT--THHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHhhhCCCc--ccccHHHHHH------HHHhhccCCCCCchHHHHHhCCHHHHHHHHHH
Confidence 346789999999999999999999999643 3334444444 4443221 234556666 7788888876
Q ss_pred ccccCCChhhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhhC-ChhhHH
Q 045086 214 IKVREFDSNKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVLM-PLENKE 292 (522)
Q Consensus 214 i~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L~-~~~nk~ 292 (522)
-...+ --+.|..||-.++....-.+..+- -+-+..+-+.+. .| ==|.....|.++-.+|. ++.--.
T Consensus 134 y~~~d---ial~~g~mlRec~k~e~l~~~iL~-~~~f~~ff~~~~-----~~----~Fdiasdaf~t~~~llt~hk~~~a 200 (335)
T PF08569_consen 134 YENPD---IALNCGDMLRECIKHESLAKIILY-SECFWKFFKYVQ-----LP----NFDIASDAFSTFKELLTRHKKLVA 200 (335)
T ss_dssp GGSTT---THHHHHHHHHHHTTSHHHHHHHHT-SGGGGGHHHHTT-----SS----SHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred hcCcc---ccchHHHHHHHHHhhHHHHHHHhC-cHHHHHHHHHhc-----CC----ccHhHHHHHHHHHHHHhccHHHHH
Confidence 66332 345677777776665444443333 122222222221 01 11222333444444442 222223
Q ss_pred HHHHhhh---HHHHHHHHhcch-hhhhhhHHHHHHHhcC
Q 045086 293 RFVKAEG---VELMIIIMKQKK-SAYASAIRALDFAMTK 327 (522)
Q Consensus 293 ~Fl~~EG---veLM~lmlkekk-~sr~~AlKvLD~Al~~ 327 (522)
.|+..-= ++-...+|...- -.|+-|||+|.--+.+
T Consensus 201 ~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 201 EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 3332211 123344555443 4677778877766654
No 80
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=25.36 E-value=1.1e+02 Score=32.03 Aligned_cols=56 Identities=25% Similarity=0.477 Sum_probs=40.3
Q ss_pred HhhHHHHHHhhhccccC-CC--ChHHHHhcCChHHHHHhhcCCCchHHHH---HHHHhhhhccc
Q 045086 76 EVDLHEELEKLKVLAGG-PE--LYPDVVNLNVIPSILGLLSHDNTDIAID---VVHLLQDLTDE 133 (522)
Q Consensus 76 E~dLd~~Ik~l~~La~~-P~--LYp~~v~l~~v~sL~~LLsHeNtDIai~---vi~lL~ELtD~ 133 (522)
..=.-++|..|..|.|. |. +. .+++ ..++.|..||.|+++|+-++ +|-+|.|+...
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~-~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLE-DLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHH-HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 34567889999998865 54 33 2221 35889999999999999655 56677787763
No 81
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.33 E-value=9.4e+02 Score=26.16 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=86.7
Q ss_pred HHHHHhhcCCCchHHHHHHHHhhhhcccccccCCCchHHHHHHHHHhcChHHHHHHHhhhh-cCCCCChhHHHHHHHHHH
Q 045086 106 PSILGLLSHDNTDIAIDVVHLLQDLTDEDVLEDNDEPARVLVDALIENNVLELLVQNIQRL-SDADSDPDEMAAVYNTLA 184 (522)
Q Consensus 106 ~sL~~LLsHeNtDIai~vi~lL~ELtD~d~~~e~~e~~~~Lv~aL~~~~~~~lLv~nL~Rl-dE~~~~e~e~~gV~~~L~ 184 (522)
..++++|.-+|.++..++|+.+--||-. ... .|..--. -+++-+..| .+. .+ -.+|+.....
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~----~~~~~~~---------~~lk~l~qL~~~~--~~-~~~a~~alVn 68 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQ----SLSKYSE---------ALLKDLTQLLKDL--DP-AEPAATALVN 68 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chh----hhccchh---------hhHHHHHHHccCc--cc-ccHHHHHHHH
Confidence 5789999999999999999999999987 110 1110001 122222222 222 22 2345544433
Q ss_pred HHHhhhccChhHHHHHhhhhchHHHHHhhccccCCChhhhhHHHHHHHHhcCChHHHHHhhhh-----chHHHHHHHHhh
Q 045086 185 TIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDSNKQYASEILAILLQNSTANQKRLGQM-----NGVDVLLQAVAM 259 (522)
Q Consensus 185 iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~Nk~YAsEiLaILLQ~s~~nr~~~~~~-----dGiD~LL~~la~ 259 (522)
+.. ++.+...+.+. |++.+..++-+..+.--+.+| -+|+=|-+........+... +|+-.|-+.
T Consensus 69 lsq-----~~~l~~~ll~~--~~k~l~~~~~~p~~~lad~~c-mlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~--- 137 (353)
T KOG2973|consen 69 LSQ-----KEELRKKLLQD--LLKVLMDMLTDPQSPLADLIC-MLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARA--- 137 (353)
T ss_pred HHh-----hHHHHHHHHHH--HHHHHHHHhcCcccchHHHHH-HHHHHhccCchHHHHHHHhcccccccchHHHHHH---
Confidence 332 56676666654 777777777655444333333 33444444444444333221 233333332
Q ss_pred cccCCCCCCcHHHHHHhHHHHHHHhhCChhhHHHHHHhh
Q 045086 260 YKSKDPKTSDEEEMLENLFDSLCCVLMPLENKERFVKAE 298 (522)
Q Consensus 260 YrkrDP~~~eE~E~mENlFd~Lcs~L~~~~nk~~Fl~~E 298 (522)
+-.++-.--.+-.|+.++|..|+. .+.+|..|++-.
T Consensus 138 ~~d~~~n~~a~f~ylA~vf~nls~---~~~gR~l~~~~k 173 (353)
T KOG2973|consen 138 FCDKSYNAYAEFHYLAPVFANLSQ---FEAGRKLLLEPK 173 (353)
T ss_pred HhCcccccccchhHHHHHHHHHhh---hhhhhhHhcchh
Confidence 222222233577888888887774 466777776665
No 82
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=24.14 E-value=75 Score=26.98 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=35.2
Q ss_pred HHHHhcchhhhhhhHHHHHHHhcCCcchhhhHHhhhchhhHHHhhh
Q 045086 304 IIIMKQKKSAYASAIRALDFAMTKYPPACERFVDVLGLKTAFAAFM 349 (522)
Q Consensus 304 ~lmlkekk~sr~~AlKvLD~Al~~~~~~C~~fVe~~GLktlF~~FM 349 (522)
.--++.++.....|-++||...+.|+.+|..|++++ +-..|-++
T Consensus 35 ~~~I~a~~T~~~kar~Lld~l~~kG~~A~~~F~~~L--~e~~p~L~ 78 (82)
T cd08330 35 YSEVRAEKTNQEKMRKLFSFVRSWGASCKDIFYQIL--REEEPYLV 78 (82)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHccCHHHHHHHHHHH--HHhChHHH
Confidence 345666778888999999999998999999999996 55555554
No 83
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=24.03 E-value=1e+03 Score=26.92 Aligned_cols=116 Identities=13% Similarity=0.226 Sum_probs=70.9
Q ss_pred CCCCCCcHHHHHHhHHHHHHHhhC-ChhhHHHHHHhhh-HHHHHHHHhcchhhhhhhHHHHHHHhcC-----C-cchhhh
Q 045086 263 KDPKTSDEEEMLENLFDSLCCVLM-PLENKERFVKAEG-VELMIIIMKQKKSAYASAIRALDFAMTK-----Y-PPACER 334 (522)
Q Consensus 263 rDP~~~eE~E~mENlFd~Lcs~L~-~~~nk~~Fl~~EG-veLM~lmlkekk~sr~~AlKvLD~Al~~-----~-~~~C~~ 334 (522)
.=|+.+|-.=.|| .--|||.+++ .+..|.+|++.-= ..++.+..+++..+++-++++.|--|-. . ..--.-
T Consensus 104 sl~~v~d~~vi~E-slKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql 182 (532)
T KOG4464|consen 104 SLPTVADMHVIME-SLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQL 182 (532)
T ss_pred CCCcccchHHHHH-HHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHH
Confidence 3355555334444 4579999997 5668999998764 4677777777777777777776654432 1 224456
Q ss_pred HHhhhchhhHHHhhhcCCCCcc-cccchhhhHHHHHHHHHHHHHHhc
Q 045086 335 FVDVLGLKTAFAAFMGKIPVNK-KNKKERYQEELEERLVSLIASLFG 380 (522)
Q Consensus 335 fVe~~GLktlF~~FM~k~~~~k-~~kk~~~~~e~eEhvisIiaSLlr 380 (522)
+++.+|+..+=.++--+.+... .+..... .++.+.++-++--+|-
T Consensus 183 ~~~l~Gl~~lt~~led~lgidse~n~~~l~-pqe~n~a~EaLK~~FN 228 (532)
T KOG4464|consen 183 IAELLGLELLTNWLEDKLGIDSEINVPPLN-PQETNRACEALKVFFN 228 (532)
T ss_pred HHHhcccHHHHHHhhccccCCCCcCCCCCC-HHHHHHHHHHHHHHhh
Confidence 8999999877666554422111 0111111 2566777777777764
No 84
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.57 E-value=1.4e+03 Score=27.91 Aligned_cols=255 Identities=16% Similarity=0.196 Sum_probs=157.3
Q ss_pred HHHHHhhhccccCCCChHHHHhcCChHHHHHhhc--CCCchHHHHHHHHhhhhcccccc----cC---CCchHHHHHHHH
Q 045086 80 HEELEKLKVLAGGPELYPDVVNLNVIPSILGLLS--HDNTDIAIDVVHLLQDLTDEDVL----ED---NDEPARVLVDAL 150 (522)
Q Consensus 80 d~~Ik~l~~La~~P~LYp~~v~l~~v~sL~~LLs--HeNtDIai~vi~lL~ELtD~d~~----~e---~~e~~~~Lv~aL 150 (522)
-.+.+.|+.+|. =|.+.|-..+..-|+.-|- -.+++|.-.+++.+-=+|--|.. ++ .++-..-+++.+
T Consensus 41 R~A~rgLKa~sr---kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~f 117 (970)
T KOG0946|consen 41 RDAVRGLKAFSR---KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQF 117 (970)
T ss_pred HHHHHHHHHHHH---HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHH
Confidence 345556665554 4899998888888999994 56888988888888777655431 11 122344678888
Q ss_pred HhcC-hHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHHhhhccChh-HHHHHhhhhchHHHHHhhccc-cCCChhhhhHH
Q 045086 151 IENN-VLELLVQNIQRLSDADSDPDEMAAVYNTLATIENLIEVKPS-VAELVCERTKLLRWLLGKIKV-REFDSNKQYAS 227 (522)
Q Consensus 151 ~~~~-~~~lLv~nL~RldE~~~~e~e~~gV~~~L~iiENl~e~~p~-~a~~~~~~t~ll~wLL~Ri~~-k~~d~Nk~YAs 227 (522)
+.++ .+.+|++-++-+|=- + =..+..+|+++++-+|. +-..+.....=+.-|..-+.. +++-.|- |-
T Consensus 118 ik~qd~I~lll~~~e~~DF~--V------R~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe--~i 187 (970)
T KOG0946|consen 118 IKNQDNITLLLQSLEEFDFH--V------RLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNE--AI 187 (970)
T ss_pred HcCchhHHHHHHHHHhhchh--h------hhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchh--HH
Confidence 8874 457888887766543 1 12367899999998884 444443333234445555543 3344442 33
Q ss_pred HHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHHHHhh-CChhhHHHHHHhhhHHHHHHH
Q 045086 228 EILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSLCCVL-MPLENKERFVKAEGVELMIII 306 (522)
Q Consensus 228 EiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~Lcs~L-~~~~nk~~Fl~~EGveLM~lm 306 (522)
=+|+-|.-+++.-++.++=-|..+.|+-+|.- .|. .+=-=-+|-+.--|-.+| ....|+.-|.++--|+=|..+
T Consensus 188 LlL~eL~k~n~~IQKlVAFENaFerLfsIIee----EGg-~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~kl 262 (970)
T KOG0946|consen 188 LLLSELVKDNSSIQKLVAFENAFERLFSIIEE----EGG-LDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKL 262 (970)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHHHHHh----cCC-CCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhh
Confidence 46888888888888777767899999998842 121 010011333333333344 467899999999999988877
Q ss_pred Hhcch--------hhhh------hhHHHHHHHhc-C----CcchhhhH-HhhhchhhHHHhhhcCC
Q 045086 307 MKQKK--------SAYA------SAIRALDFAMT-K----YPPACERF-VDVLGLKTAFAAFMGKI 352 (522)
Q Consensus 307 lkekk--------~sr~------~AlKvLD~Al~-~----~~~~C~~f-Ve~~GLktlF~~FM~k~ 352 (522)
|..-- ++.. -||-++---.+ | ....|++. +.-.+|-.|-.+||..+
T Consensus 263 L~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 263 LSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred cCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 75321 2111 12222222111 1 14578664 55567778889999874
No 85
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=23.47 E-value=7.9e+02 Score=24.97 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=30.5
Q ss_pred HHHHHhHHHHHHHhhCChhhHHH--------HHHhhhHHHHHHHHhcchhhhhhhH
Q 045086 271 EEMLENLFDSLCCVLMPLENKER--------FVKAEGVELMIIIMKQKKSAYASAI 318 (522)
Q Consensus 271 ~E~mENlFd~Lcs~L~~~~nk~~--------Fl~~EGveLM~lmlkekk~sr~~Al 318 (522)
+|-...+|+|||.++-..+.+-+ +.++.+++=+.-.+..+..+....+
T Consensus 70 ee~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l 125 (214)
T TIGR03060 70 EEHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQANLSNGGGD 125 (214)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccCCcchh
Confidence 44567999999999976655432 5566666656666655544444334
No 86
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.20 E-value=70 Score=29.47 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=28.2
Q ss_pred CCCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhh
Q 045086 92 GPELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDL 130 (522)
Q Consensus 92 ~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~EL 130 (522)
+|.-=..+-++|+=..++.|++|+|.+|.-.++--+|-|
T Consensus 75 ~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 75 YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp -GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 344333344789999999999999999987777666654
No 87
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=23.04 E-value=1.1e+02 Score=29.53 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=40.8
Q ss_pred ChHHHHHHHhhhhcCCCCChhHHHHHHH----HHHHHHhhhccChhHHHHHhhhh--chHHHHHhhcccc
Q 045086 154 NVLELLVQNIQRLSDADSDPDEMAAVYN----TLATIENLIEVKPSVAELVCERT--KLLRWLLGKIKVR 217 (522)
Q Consensus 154 ~~~~lLv~nL~RldE~~~~e~e~~gV~~----~L~iiENl~e~~p~~a~~~~~~t--~ll~wLL~Ri~~k 217 (522)
+++|-+|+....+--= -|.-+.++|+ .++|.||.--++..+..-++.-+ .+++|++.|+...
T Consensus 29 q~IESIV~Afg~fAqM--LESTy~AthsSF~a~v~VAeqF~~Lk~~lgs~l~ifal~R~lk~l~~kl~~~ 96 (158)
T PF04088_consen 29 QSIESIVGAFGGFAQM--LESTYMATHSSFFAMVSVAEQFGRLKNTLGSILGIFALFRWLKWLYRKLLGR 96 (158)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677766665332 4667888998 56778887777777766555433 3577777777654
No 88
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=22.15 E-value=72 Score=34.55 Aligned_cols=42 Identities=24% Similarity=0.451 Sum_probs=33.4
Q ss_pred ccCCCChHHHHhcCChHHHHHhhcCCCchHHHHHHHHhhhhc
Q 045086 90 AGGPELYPDVVNLNVIPSILGLLSHDNTDIAIDVVHLLQDLT 131 (522)
Q Consensus 90 a~~P~LYp~~v~l~~v~sL~~LLsHeNtDIai~vi~lL~ELt 131 (522)
-..||--..+.+-|+=..++.|++|+|.||--.++.-++-+.
T Consensus 386 r~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 386 RASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 345666666788999999999999999999877777665443
No 89
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=22.12 E-value=85 Score=25.44 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.8
Q ss_pred HhcchhhhhhhHHHHHHHhcCCcchhhhHHhhh
Q 045086 307 MKQKKSAYASAIRALDFAMTKYPPACERFVDVL 339 (522)
Q Consensus 307 lkekk~sr~~AlKvLD~Al~~~~~~C~~fVe~~ 339 (522)
++.....+..|-++||...+.++.+|..|++++
T Consensus 36 i~~~~~~~~k~~~Lld~l~~kg~~af~~F~~~L 68 (80)
T cd01671 36 IRSESTRQDKARKLLDILPRKGPKAFQSFLQAL 68 (80)
T ss_pred HHcCCChHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 333445777888999999988999999999986
No 90
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=22.04 E-value=1.1e+02 Score=29.02 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=25.2
Q ss_pred ccccCCCC-hHHHH-hcC-ChHHHHHhh-cCCCchHHHHH
Q 045086 88 VLAGGPEL-YPDVV-NLN-VIPSILGLL-SHDNTDIAIDV 123 (522)
Q Consensus 88 ~La~~P~L-Yp~~v-~l~-~v~sL~~LL-sHeNtDIai~v 123 (522)
.+.+.|.- -..|+ .+| |-+-|+.-+ -|||+.||--|
T Consensus 83 LiPQCp~~~C~afi~sLGCCk~ALl~F~KRHPNP~iA~~v 122 (140)
T PF10952_consen 83 LIPQCPNTECEAFIDSLGCCKKALLDFMKRHPNPEIARLV 122 (140)
T ss_pred hccCCCCcchHHHHHhhhccHHHHHHHHHhCCCHHHHHHH
Confidence 34455543 66777 668 566788888 79999999654
No 91
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=21.03 E-value=2.2e+02 Score=26.73 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhhccChhHHHHHhhhhchHHHHHhhccccCCCh-hhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHH
Q 045086 178 AVYNTLATIENLIEVKPSVAELVCERTKLLRWLLGKIKVREFDS-NKQYASEILAILLQNSTANQKRLGQMNGVDVLLQA 256 (522)
Q Consensus 178 gV~~~L~iiENl~e~~p~~a~~~~~~t~ll~wLL~Ri~~k~~d~-Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~ 256 (522)
..-+.++++..+.-+-|+++..+....++++-++.++..+.-+. -...+.|+|+.= -+.++++.+...+|++.|=+.
T Consensus 59 ~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aA--c~d~~~r~~I~~~~~~~L~~~ 136 (157)
T PF11701_consen 59 SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAA--CIDKSCRTFISKNYVSWLKEL 136 (157)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHH--TTSHHHHHCCHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHHH
Confidence 66677888889999999999999999999999999998433222 233455555443 234666666668888887755
Q ss_pred H
Q 045086 257 V 257 (522)
Q Consensus 257 l 257 (522)
.
T Consensus 137 ~ 137 (157)
T PF11701_consen 137 Y 137 (157)
T ss_dssp T
T ss_pred H
Confidence 4
No 92
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=20.81 E-value=69 Score=30.75 Aligned_cols=45 Identities=18% Similarity=0.392 Sum_probs=30.9
Q ss_pred HhcCCCCCccccccHhhHHHHHHhhhccccCCCChHHHHhcCChHHHH
Q 045086 62 RLKYPDQPEKFADTEVDLHEELEKLKVLAGGPELYPDVVNLNVIPSIL 109 (522)
Q Consensus 62 R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL~ 109 (522)
....+.+|.+|.+.|.+|..++..|.++++. ||++-....+..|.
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~al~~l~~~~e~---yP~Lka~~~~~~l~ 124 (186)
T PF04011_consen 80 NLSDSADIQEFQQAEAELSQALSRLLAVVEN---YPELKADENFQQLM 124 (186)
T ss_dssp ---H--SHHHHHHHHHHHHHHHHHHHHHHTT----HHHHH-HHHHHHH
T ss_pred hcccccchHHHHHHHHHHHHHHHHHHHHHHc---CCccchhHHHHHHH
Confidence 3446789999999999999999999988775 88876655544444
No 93
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=20.40 E-value=3.6e+02 Score=30.24 Aligned_cols=67 Identities=19% Similarity=0.318 Sum_probs=37.2
Q ss_pred hhchHHHHHhhccccCCCh-hhhhHHHHHHHHhcCChHHHHHhhhhchHHHHHHHHhhcccCCCCCCcHHHHHHhHHHHH
Q 045086 203 RTKLLRWLLGKIKVREFDS-NKQYASEILAILLQNSTANQKRLGQMNGVDVLLQAVAMYKSKDPKTSDEEEMLENLFDSL 281 (522)
Q Consensus 203 ~t~ll~wLL~Ri~~k~~d~-Nk~YAsEiLaILLQ~s~~nr~~~~~~dGiD~LL~~la~YrkrDP~~~eE~E~mENlFd~L 281 (522)
+++|++-|+..+. ..++. -..-|+++|+-|..-|...-......-|=+.|++.|. .+++++-+++.+
T Consensus 60 ~q~LI~~Li~~L~-p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~-----------S~~~v~~Ll~~m 127 (475)
T PF04499_consen 60 EQNLIPRLIDLLS-PSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLV-----------SEETVEKLLDIM 127 (475)
T ss_pred HhCHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHh-----------ChHHHHHHHHHH
Confidence 4667777788887 33433 3446778877766544432222222234467777664 455555555443
No 94
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=20.06 E-value=2.3e+02 Score=26.08 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhHHHHhcCCCCCccccccHhhHHHHHHhhhccccCCCChHHHHhcCChHHH-HHhhc
Q 045086 47 LVLSFERRLKENIEARLKYPDQPEKFADTEVDLHEELEKLKVLAGGPELYPDVVNLNVIPSI-LGLLS 113 (522)
Q Consensus 47 lvl~fEk~i~kNqe~R~K~~ddP~KFmdSE~dLd~~Ik~l~~La~~P~LYp~~v~l~~v~sL-~~LLs 113 (522)
+-..+..++.+..-..=.-..||.||+=-.+..-+=+-.|=----.|.-.|.||.+||-+-| +-+|.
T Consensus 10 ~Y~~LK~kYa~~lv~~W~E~TdP~K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 10 TYQRLKEKYARWLVDNWPESTDPQKHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred HHHHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHH
Confidence 33344444444433333336899999977665555544443333334567889999987644 44443
Done!